7835 168 56 43 chr13 16000000 16000715 -103744183 - ERVL LTR ERVL -1512 4252 3547 2078 132 0 20 chr13 16000715 16001019 -103743879 - AluSx SINE Alu -14 298 1 7835 168 56 43 chr13 16001019 16001823 -103743075 - ERVL LTR ERVL -2217 3547 2714 2005 157 0 3 chr13 16001828 16002140 -103742758 + AluJb SINE Alu 1 311 -1 198 0 0 0 chr13 16002148 16002170 -103742728 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr13 16002347 16002369 -103742529 + (A)n Simple_repeat Simple_repeat 1 22 0 6590 188 47 21 chr13 16002379 16003304 -103741594 - ERVL LTR ERVL -3042 2722 1754 2137 124 0 35 chr13 16003304 16003618 -103741280 + AluSx SINE Alu 1 303 -9 6590 188 47 21 chr13 16003618 16003966 -103740932 - ERVL LTR ERVL -4010 1754 1416 547 136 48 0 chr13 16004041 16004144 -103740754 + AluSg/x SINE Alu 203 310 0 1568 207 4 0 chr13 16004144 16004424 -103740474 - ERVL LTR ERVL -4402 1362 1082 331 130 0 0 chr13 16004424 16004470 -103740428 - Alu SINE Alu -8 292 247 397 206 152 0 chr13 16004570 16004662 -103740236 - ERVL LTR ERVL -4746 1018 913 2174 127 0 3 chr13 16004692 16005000 -103739898 + AluSq SINE Alu 1 307 -6 1274 198 48 17 chr13 16005457 16005750 -103739148 + Charlie1b DNA MER1_type 6 307 -216 264 258 21 21 chr13 16005859 16005956 -103738942 + L1MC4a LINE L1 7244 7340 -468 478 181 181 0 chr13 16005986 16006091 -103738807 - FLAM_A SINE Alu -9 124 1 1966 142 0 0 chr13 16006118 16006419 -103738479 - AluSx SINE Alu 0 301 1 2285 94 0 7 chr13 16006640 16006927 -103737971 - AluSx SINE Alu -7 305 21 901 195 40 0 chr13 16006933 16007107 -103737791 - L1MC1 LINE L1 -8 6325 6145 353 276 77 32 chr13 16007108 16007329 -103737569 - MER20B DNA MER1_type -48 735 505 810 169 0 22 chr13 16007401 16007537 -103737361 + AluJo SINE Alu 3 135 -177 1284 169 56 91 chr13 16007566 16007886 -103737012 + AluJo SINE Alu 1 309 -3 592 155 4 0 chr13 16007905 16008012 -103736886 + L1M4c LINE L1 2322 2431 -3951 327 226 0 14 chr13 16008034 16008140 -103736758 - L1MCa LINE L1 -1339 6983 2006 2137 104 10 3 chr13 16008141 16008430 -103736468 - AluSq SINE Alu -22 291 1 805 130 26 0 chr13 16008451 16008566 -103736332 - FLAM_C SINE Alu -25 118 1 2018 188 12 22 chr13 16008567 16008972 -103735926 - MER74A LTR ERVL -13 545 145 424 218 16 89 chr13 16009078 16009202 -103735696 - MER74A LTR ERVL -423 135 21 2231 118 0 3 chr13 16009205 16009511 -103735387 + AluSx SINE Alu 1 305 -7 1262 218 92 13 chr13 16009511 16009951 -103734947 + L1MB3 LINE L1 5659 6119 -2 2334 82 0 3 chr13 16009951 16010243 -103734655 - AluSq SINE Alu -22 291 1 22 0 0 0 chr13 16010629 16010651 -103734247 + AT_rich Low_complexity Low_complexity 1 22 0 1611 142 85 21 chr13 16010651 16010932 -103733966 - AluJb SINE Alu -13 299 1 296 47 0 0 chr13 16010941 16010984 -103733914 - L1MB3 LINE L1 -2 6181 6139 1123 69 0 0 chr13 16011028 16011159 -103733739 - AluSg SINE Alu -179 131 1 1653 171 13 38 chr13 16011162 16011333 -103733565 - AluJo SINE Alu -4 308 147 2204 126 3 0 chr13 16011333 16011642 -103733256 - AluSq SINE Alu -3 310 1 1653 171 13 38 chr13 16011642 16011786 -103733112 - AluJo SINE Alu -165 147 1 1521 167 9 65 chr13 16011787 16011880 -103733018 - L1MB2 LINE L1 -2 6169 6072 2453 77 3 0 chr13 16011880 16012180 -103732718 - AluSp SINE Alu -11 302 2 1521 167 9 65 chr13 16012180 16012427 -103732471 - L1MB2 LINE L1 -99 6072 5848 1376 203 16 4 chr13 16012439 16012695 -103732203 + AluJo SINE Alu 14 272 -40 2128 76 69 0 chr13 16012741 16013018 -103731880 + AluSg1 SINE Alu 1 296 -13 1341 163 34 0 chr13 16013034 16013267 -103731631 - L1MB2 LINE L1 -329 5854 5614 616 159 152 8 chr13 16013267 16013399 -103731499 + MLT1A1 LTR MaLR 1 151 -214 248 233 33 0 chr13 16013515 16013575 -103731323 - L1MB2 LINE L1 -999 5147 5086 424 160 13 0 chr13 16013577 16013652 -103731246 - AluY SINE Alu -123 188 113 409 214 10 19 chr13 16013751 16013854 -103731044 - AluSp/q SINE Alu -12 301 200 312 83 0 21 chr13 16013974 16014022 -103730876 + Alu SINE Alu 32 78 -222 379 243 38 84 chr13 16014118 16014251 -103730647 + L1M4c LINE L1 1768 1906 -4478 2126 115 0 7 chr13 16014251 16014570 -103730328 + AluSx SINE Alu 3 319 0 379 243 38 84 chr13 16014570 16014627 -103730271 + L1M4c LINE L1 1906 1964 -4420 422 192 211 19 chr13 16014627 16014731 -103730167 - FLAM_A SINE Alu -9 124 1 379 243 38 84 chr13 16014731 16014850 -103730048 + L1M4c LINE L1 1964 2158 -4226 326 146 0 0 chr13 16014845 16014893 -103730005 + L1MB2 LINE L1 5420 5467 -704 * 1945 146 0 77 chr13 16014917 16015142 -103729756 - MER47A DNA MER2_type -1957 366 178 2089 126 17 3 chr13 16015142 16015435 -103729463 - AluSq SINE Alu -16 297 1 1945 146 0 77 chr13 16015435 16015572 -103729326 - MER47A DNA MER2_type -2145 178 32 1985 119 51 0 chr13 16015602 16015896 -103729002 + AluSq SINE Alu 1 309 -4 1201 156 15 65 chr13 16015934 16016115 -103728783 + L1MB2 LINE L1 5479 5645 -538 2345 129 36 80 chr13 16016115 16016563 -103728335 - MSTC LTR MaLR 0 428 1 1201 156 15 65 chr13 16016563 16016644 -103728254 + L1MB2 LINE L1 5645 5728 -455 410 197 0 0 chr13 16016866 16016937 -103727961 + MER5A DNA MER1_type 1 71 -118 2392 77 3 19 chr13 16016940 16017253 -103727645 + AluY SINE Alu 1 308 -3 2218 88 7 0 chr13 16017270 16017553 -103727345 + AluSx SINE Alu 13 297 -15 353 241 0 0 chr13 16017553 16017632 -103727266 + L1MB2 LINE L1 5930 6008 -163 * 773 179 32 105 chr13 16017631 16017910 -103726988 + L1M4c LINE L1 2260 2521 -3861 1579 230 38 99 chr13 16018024 16018701 -103726197 + L1M4c LINE L1 2484 3099 -3283 2562 54 0 3 chr13 16018701 16018996 -103725902 - AluY SINE Alu -17 294 1 1579 230 38 99 chr13 16018996 16019107 -103725791 + L1M4c LINE L1 3099 3215 -3167 1528 191 3 28 chr13 16019107 16019390 -103725508 + AluJo SINE Alu 1 276 -36 2101 100 3 47 chr13 16019393 16019712 -103725186 - AluSg SINE Alu -3 307 3 189 0 0 0 chr13 16019729 16019750 -103725148 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1881 113 64 18 chr13 16020242 16020524 -103724374 - AluSx SINE Alu -17 295 1 369 250 180 8 chr13 16020815 16020943 -103723955 - MER5A DNA MER1_type -6 183 34 586 135 0 11 chr13 16021007 16021096 -103723802 + AluJ/FLAM SINE Alu 4 91 -221 873 145 132 7 chr13 16021097 16021249 -103723649 + AluJb SINE Alu 1 171 -141 1908 161 0 0 chr13 16021249 16021522 -103723376 - AluJo SINE Alu -39 273 1 2384 38 0 0 chr13 16021524 16021790 -103723108 - AluY SINE Alu -12 299 34 1625 167 17 17 chr13 16022531 16022824 -103722074 + AluJb SINE Alu 13 305 -7 2039 79 64 4 chr13 16023384 16023679 -103721219 + AluSq SINE Alu 1 311 0 1863 148 7 0 chr13 16024089 16024403 -103720495 + AluSq SINE Alu 1 316 0 1808 173 3 3 chr13 16024498 16024793 -103720105 + AluJb SINE Alu 1 295 -17 1849 153 10 3 chr13 16024808 16025103 -103719795 + AluJb SINE Alu 1 297 -15 383 176 47 0 chr13 16025330 16025415 -103719483 - Charlie1a DNA MER1_type -459 996 908 1966 143 7 3 chr13 16025417 16025703 -103719195 + AluSx SINE Alu 3 289 -23 951 190 0 11 chr13 16025717 16025891 -103719007 - FRAM SINE Alu -12 164 1 1583 208 139 47 chr13 16025936 16026533 -103718365 - Charlie1a DNA MER1_type -550 905 254 1211 259 110 77 chr13 16026528 16027189 -103717709 + MER21B LTR ERV1 27 709 -154 * 416 234 341 0 chr13 16027220 16027387 -103717511 - Charlie1a DNA MER1_type -1177 278 55 2128 113 3 3 chr13 16027741 16028033 -103716865 + AluSq SINE Alu 1 292 -21 1695 90 9 0 chr13 16028421 16028643 -103716255 - AluSq SINE Alu -89 224 1 895 210 46 50 chr13 16028647 16028928 -103715970 + L1MC5 LINE L1 7154 7433 -528 1866 143 0 41 chr13 16028928 16029242 -103715656 + AluSx SINE Alu 1 301 -11 602 234 54 36 chr13 16029314 16029428 -103715470 + MER45A DNA AcHobo 1 120 -1461 2463 84 7 0 chr13 16029428 16029738 -103715160 + AluSp SINE Alu 2 313 0 602 234 54 36 chr13 16029738 16029790 -103715108 + MER45A DNA AcHobo 120 170 -8 290 179 0 15 chr13 16029878 16029945 -103714953 + (TA)n Simple_repeat Simple_repeat 1 66 0 234 222 99 0 chr13 16029946 16030027 -103714871 + L1MC4 LINE L1 6614 6702 -1340 2008 114 7 29 chr13 16030027 16030333 -103714565 - AluSq SINE Alu -14 299 1 844 165 0 0 chr13 16030609 16030742 -103714156 - AluJb SINE Alu -22 290 158 2161 180 99 61 chr13 16030750 16031301 -103713597 + LTR12 LTR ERV1 1 488 -226 1377 172 20 24 chr13 16031301 16031598 -103713300 - AluY SINE Alu -15 296 1 2161 180 99 61 chr13 16031598 16031628 -103713270 + LTR12 LTR ERV1 488 515 -199 235 94 38 75 chr13 16031735 16031788 -103713110 - Charlie1a DNA MER1_type -697 758 708 1617 170 0 51 chr13 16031816 16032127 -103712771 - AluJo SINE Alu -17 295 1 1897 170 19 43 chr13 16032127 16032435 -103712463 - Charlie1a DNA MER1_type -2049 712 413 2075 103 55 0 chr13 16032435 16032727 -103712171 - AluSx SINE Alu -4 308 1 1897 170 19 43 chr13 16032727 16032789 -103712109 - Charlie1a DNA MER1_type -2348 413 351 201 195 0 0 chr13 16032789 16032830 -103712068 + (CATATA)n Simple_repeat Simple_repeat 3 43 0 2245 99 3 3 chr13 16032901 16033193 -103711705 - AluSp SINE Alu -21 292 1 2273 95 0 14 chr13 16033196 16033491 -103711407 - AluSc SINE Alu -18 291 1 688 276 50 40 chr13 16033492 16033626 -103711272 - Charlie1a DNA MER1_type -2461 300 169 2110 131 7 3 chr13 16033626 16033931 -103710967 - AluSx SINE Alu -6 306 1 688 276 50 40 chr13 16033931 16033999 -103710899 - Charlie1a DNA MER1_type -2592 169 103 2335 167 17 32 chr13 16033999 16034278 -103710620 + MER65C LTR ERV1 1 272 -189 2415 82 0 0 chr13 16034278 16034570 -103710328 - AluY SINE Alu -18 293 2 2335 167 17 32 chr13 16034570 16034758 -103710140 + MER65C LTR ERV1 272 461 0 688 276 50 40 chr13 16034758 16034851 -103710047 - Charlie1a DNA MER1_type -2658 103 1 895 225 147 55 chr13 16035070 16035462 -103709436 - MER57A LTR ERV1 -2 401 1 2012 122 0 60 chr13 16035467 16035604 -103709294 + AluSx SINE Alu 1 145 -167 2097 127 0 16 chr13 16035604 16035911 -103708987 + AluSx SINE Alu 1 302 -10 2012 122 0 60 chr13 16035911 16036092 -103708806 + AluSx SINE Alu 145 300 -12 527 315 108 7 chr13 16036098 16036393 -103708505 - L1MEc LINE L1 -5972 424 100 2232 122 0 28 chr13 16036396 16036575 -103708323 - AluSx SINE Alu -1 311 128 2614 64 0 0 chr13 16036575 16036886 -103708012 - AluY SINE Alu 0 311 1 2381 94 0 3 chr13 16036888 16037197 -103707701 - AluSg SINE Alu -2 308 1 2232 122 0 28 chr13 16037197 16037334 -103707564 - AluSx SINE Alu -185 127 1 1843 161 51 106 chr13 16037474 16037583 -103707315 - MER67A LTR ERV1 0 543 430 1472 174 51 11 chr13 16037583 16037858 -103707040 + AluJo SINE Alu 1 286 -26 1843 161 51 106 chr13 16037858 16037870 -103707028 - MER67A LTR ERV1 -113 430 419 2059 107 3 17 chr13 16037870 16038005 -103706893 + AluSx SINE Alu 3 138 -174 2311 113 3 0 chr13 16038005 16038316 -103706582 + AluSp SINE Alu 1 312 -1 2059 107 3 17 chr13 16038316 16038469 -103706429 + AluSx SINE Alu 138 287 -25 2240 95 3 29 chr13 16038470 16038785 -103706113 + AluSg SINE Alu 1 307 -3 1843 161 51 106 chr13 16038785 16039131 -103705767 - MER67A LTR ERV1 -123 420 99 2143 122 6 10 chr13 16039131 16039443 -103705455 + AluSx SINE Alu 1 311 -1 1157 151 0 0 chr13 16039443 16039609 -103705289 + AluSg/x SINE Alu 126 291 -21 1948 153 0 16 chr13 16039620 16039933 -103704965 + AluJo SINE Alu 1 308 -4 183 42 0 0 chr13 16039988 16040012 -103704886 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1966 85 0 0 chr13 16040014 16040249 -103704649 - AluSg SINE Alu -75 235 1 2278 103 7 0 chr13 16040307 16040607 -103704291 - AluSp SINE Alu -11 302 1 1321 95 0 0 chr13 16040609 16040777 -103704121 - AluSg/x SINE Alu -10 302 135 3606 81 35 2 chr13 16041004 16041488 -103703410 - LTR3b LTR ERVK 0 500 1 2356 90 3 16 chr13 16042581 16042891 -103702007 - AluSx SINE Alu -5 307 2 342 82 260 14 chr13 16042913 16042986 -103701912 - HY1 scRNA scRNA -11 101 11 2013 131 35 7 chr13 16043007 16043297 -103701601 - AluJb SINE Alu -14 298 1 1786 128 115 10 chr13 16043359 16043664 -103701234 - MER1B DNA MER1_type 0 337 1 2047 132 7 23 chr13 16043922 16044093 -103700805 - AluSx SINE Alu -7 305 140 2119 121 16 3 chr13 16044093 16044400 -103700498 - AluSq SINE Alu 0 313 3 2047 132 7 23 chr13 16044400 16044538 -103700360 - AluSx SINE Alu -172 140 1 1978 148 3 0 chr13 16045006 16045296 -103699602 - AluSc SINE Alu -18 291 1 2138 83 57 20 chr13 16045331 16045651 -103699247 + AluSq SINE Alu 1 313 0 530 248 24 0 chr13 16045710 16045835 -103699063 - FLAM_A SINE Alu -4 129 2 2058 138 3 0 chr13 16046182 16046480 -103698418 - AluSx SINE Alu -13 299 1 737 179 8 0 chr13 16046653 16046770 -103698128 + FLAM_C SINE Alu 1 118 -15 189 0 0 0 chr13 16046774 16046795 -103698103 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr13 16046956 16046978 -103697920 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr13 16047152 16047190 -103697708 + AT_rich Low_complexity Low_complexity 1 38 0 2195 122 0 0 chr13 16047508 16047804 -103697094 - AluSx SINE Alu -16 296 1 620 126 110 176 chr13 16048957 16049028 -103695870 + L1MB8 LINE L1 5360 5434 -750 2206 125 0 6 chr13 16049028 16049340 -103695558 + AluSx SINE Alu 1 310 -2 620 126 110 176 chr13 16049340 16049424 -103695474 + L1MB8 LINE L1 5434 5494 -690 1888 160 0 19 chr13 16049424 16049742 -103695156 + AluSx SINE Alu 1 312 0 620 126 110 176 chr13 16049742 16049840 -103695058 + L1MB8 LINE L1 5494 5597 -587 1220 123 22 0 chr13 16049859 16050038 -103694860 + AluSg/x SINE Alu 121 303 -9 1928 191 66 41 chr13 16050043 16050140 -103694758 + L1MB8 LINE L1 5580 5673 -505 2195 96 0 13 chr13 16050140 16050441 -103694457 + AluSg1 SINE Alu 1 297 -12 1928 191 66 41 chr13 16050441 16050826 -103694072 + L1MB8 LINE L1 5673 6074 -104 254 100 60 0 chr13 16050821 16050871 -103694027 + L1MB7 LINE L1 6132 6184 0 * 23 68 0 0 chr13 16051356 16051400 -103693498 + AT_rich Low_complexity Low_complexity 1 44 0 2491 45 41 0 chr13 16051415 16051707 -103693191 + AluY SINE Alu 1 304 -7 2259 77 0 0 chr13 16051857 16052142 -103692756 + AluSx SINE Alu 1 285 -27 738 318 82 23 chr13 16052186 16052529 -103692369 - L2 LINE L2 -581 2733 2371 484 149 11 23 chr13 16052540 16052627 -103692271 + Tigger3(Golem) DNA MER2_type 13 98 -2931 807 167 48 12 chr13 16052627 16052795 -103692103 + AluJb SINE Alu 135 308 -4 309 241 86 69 chr13 16052799 16052915 -103691983 - HAL1 LINE L1 -23 2484 2367 32 57 0 0 chr13 16052915 16052968 -103691930 + AT_rich Low_complexity Low_complexity 1 53 0 1584 153 21 28 chr13 16052968 16053255 -103691643 - AluJb SINE Alu -26 286 2 828 233 18 0 chr13 16053261 16053424 -103691474 - FAM SINE Alu -9 166 1 436 247 37 74 chr13 16053432 16053622 -103691276 - HAL1 LINE L1 -131 2376 2194 895 194 56 6 chr13 16053635 16053815 -103691083 - MER20 DNA MER1_type -30 189 1 922 191 0 0 chr13 16054045 16054207 -103690691 - AluJb SINE Alu -17 295 134 1509 122 95 8 chr13 16054214 16054476 -103690422 - AluSg SINE Alu -25 285 1 2188 78 41 0 chr13 16054499 16054792 -103690106 - AluY SINE Alu -6 305 1 1809 158 7 0 chr13 16054794 16055086 -103689812 - AluJb SINE Alu -14 298 5 2050 90 43 13 chr13 16055180 16055480 -103689418 + AluSx SINE Alu 1 309 -3 243 0 0 0 chr13 16055584 16055611 -103689287 + (A)n Simple_repeat Simple_repeat 1 27 0 2144 96 0 7 chr13 16055653 16055954 -103688944 - AluSx SINE Alu -13 299 1 2035 123 3 0 chr13 16056122 16056422 -103688476 - AluSx SINE Alu -11 301 1 1113 193 148 37 chr13 16056558 16056828 -103688070 - AluJo SINE Alu 0 302 3 616 267 107 21 chr13 16057071 16057352 -103687546 - L1M4 LINE L1 -1116 5030 4726 783 202 31 73 chr13 16057365 16057652 -103687246 + L1M4 LINE L1 4954 5228 -918 817 143 0 84 chr13 16057655 16057771 -103687127 + FLAM_C SINE Alu 2 103 -209 2112 99 7 10 chr13 16057771 16058074 -103686824 - AluSq SINE Alu -11 302 1 817 143 0 84 chr13 16058074 16058111 -103686787 + FLAM_C SINE Alu 103 142 -170 267 149 0 24 chr13 16058115 16058191 -103686707 + L1M4 LINE L1 5227 5300 -846 235 280 0 0 chr13 16058293 16058343 -103686555 - MER5A DNA MER1_type -106 83 34 593 135 0 11 chr13 16058407 16058496 -103686402 + AluJ/FLAM SINE Alu 4 91 -221 810 145 132 7 chr13 16058497 16058649 -103686249 + AluJb SINE Alu 1 171 -141 1813 158 0 0 chr13 16058649 16058922 -103685976 - AluJo SINE Alu -39 273 1 1953 127 31 0 chr13 16058924 16059215 -103685683 - AluSx SINE Alu -12 300 1 1958 136 10 0 chr13 16059245 16059555 -103685343 + MER47A DNA MER2_type 1 313 -53 258 260 0 55 chr13 16059598 16059671 -103685227 + MER47A DNA MER2_type 298 366 0 * 363 71 36 18 chr13 16059671 16059724 -103685174 + Charlie1a DNA MER1_type 757 810 -645 1949 129 7 0 chr13 16059730 16060025 -103684873 - AluSp SINE Alu -16 297 1 2211 112 0 0 chr13 16060076 16060388 -103684510 - AluSx SINE Alu 0 312 1 261 122 0 0 chr13 16060399 16060440 -103684458 + Charlie1a DNA MER1_type 832 872 -583 1029 165 67 0 chr13 16060460 16060654 -103684244 + AluJb SINE Alu 87 293 -19 739 218 47 5 chr13 16060671 16060864 -103684034 + Charlie1a DNA MER1_type 1055 1255 -200 322 191 17 26 chr13 16060907 16061022 -103683876 + T-rich Low_complexity Low_complexity 5 118 0 209 0 65 0 chr13 16061022 16061053 -103683845 + (TC)n Simple_repeat Simple_repeat 1 33 0 607 177 35 0 chr13 16061054 16061167 -103683731 - AluSg/x SINE Alu -5 305 189 2022 109 3 0 chr13 16061170 16061454 -103683444 + AluSx SINE Alu 1 285 -27 189 0 0 0 chr13 16061454 16061475 -103683423 + (CA)n Simple_repeat Simple_repeat 2 22 0 1130 153 0 0 chr13 16061475 16061645 -103683253 + AluSg/x SINE Alu 129 298 -12 757 136 0 0 chr13 16061690 16061800 -103683098 + FLAM_C SINE Alu 2 111 -32 1932 126 26 0 chr13 16061816 16062118 -103682780 - AluSx SINE Alu 0 312 3 2305 61 0 10 chr13 16062274 16062571 -103682327 + AluY SINE Alu 1 294 -17 473 200 11 0 chr13 16062578 16062673 -103682225 + MER66A LTR ERV1 287 382 -96 1087 133 0 22 chr13 16062674 16062691 -103682207 + AluSq SINE Alu 120 136 -177 2198 101 0 7 chr13 16062691 16062997 -103681901 + AluSg SINE Alu 1 304 -6 1087 133 0 22 chr13 16062997 16063159 -103681739 + AluSq SINE Alu 136 295 -18 2034 107 3 3 chr13 16063206 16063505 -103681393 + AluSc SINE Alu 2 300 -9 336 266 150 9 chr13 16063531 16063644 -103681254 + MIR SINE MIR 16 144 -64 366 258 148 19 chr13 16063650 16063805 -103681093 + L1MB4 LINE L1 5444 5618 -2190 371 191 0 0 chr13 16063882 16063945 -103680953 - L1MC4 LINE L1 -1340 6702 6640 1579 178 20 13 chr13 16063946 16064249 -103680649 - AluJb SINE Alu -7 305 1 1093 119 0 99 chr13 16064273 16064475 -103680423 + AluSx SINE Alu 1 182 -130 263 94 0 0 chr13 16064477 16064509 -103680389 + Alu SINE Alu 18 49 -251 2100 98 3 0 chr13 16064509 16064794 -103680104 + AluSq SINE Alu 18 303 -10 1158 141 0 0 chr13 16064796 16064973 -103679925 + AluSq SINE Alu 136 312 -1 2137 105 3 0 chr13 16065155 16065451 -103679447 - AluSx SINE Alu -15 297 1 708 153 0 8 chr13 16065474 16065592 -103679306 - AluSg/x SINE Alu -13 299 183 410 203 0 0 chr13 16065593 16065657 -103679241 - AluS SINE Alu -239 64 1 979 224 97 52 chr13 16065683 16066032 -103678866 - MLT1A1 LTR MaLR 0 365 1 879 214 0 37 chr13 16066121 16066308 -103678590 + AluJb SINE Alu 126 305 -7 1789 138 35 18 chr13 16066311 16066611 -103678287 + L1MB4 LINE L1 5831 6139 -41 2288 67 0 20 chr13 16066611 16066910 -103677988 + AluSc SINE Alu 1 293 -16 1789 138 35 18 chr13 16066910 16066949 -103677949 + L1MB4 LINE L1 6139 6176 -4 26 0 0 27 chr13 16066966 16066988 -103677910 + AT_rich Low_complexity Low_complexity 1 23 -13 1681 117 98 0 chr13 16066988 16067252 -103677646 - AluSx SINE Alu -22 290 1 26 0 0 27 chr13 16067252 16067266 -103677632 + AT_rich Low_complexity Low_complexity 23 36 0 815 169 0 0 chr13 16067272 16067402 -103677496 - AluJb SINE Alu -30 282 153 2242 193 23 25 chr13 16067420 16067732 -103677166 - L1M4 LINE L1 -981 5165 4853 2129 129 0 0 chr13 16067732 16068035 -103676863 + AluSx SINE Alu 1 303 -9 2242 193 23 25 chr13 16068035 16068245 -103676653 - L1M4 LINE L1 -1293 4853 4644 2001 112 0 11 chr13 16068263 16068540 -103676358 - AluSp SINE Alu -35 278 5 257 108 0 0 chr13 16068540 16068577 -103676321 - L1M4 LINE L1 -1605 4541 4505 1045 160 10 10 chr13 16068578 16068778 -103676120 - AluJb SINE Alu -5 307 108 1527 171 15 0 chr13 16068800 16069074 -103675824 + AluSx SINE Alu 30 307 -5 702 161 0 0 chr13 16069155 16069267 -103675631 - AluSg/x SINE Alu -13 297 186 2068 109 3 3 chr13 16069784 16070078 -103674820 - AluSg1 SINE Alu -14 295 2 364 184 89 16 chr13 16070092 16070233 -103674665 + L1ME LINE L1 5197 5345 -801 840 145 0 0 chr13 16070257 16070388 -103674510 - FLAM_C SINE Alu -1 132 2 324 176 44 15 chr13 16070389 16070457 -103674441 + L1ME LINE L1 5492 5561 -603 1683 164 21 0 chr13 16070496 16070783 -103674115 - AluSx SINE Alu -16 296 4 1585 194 3 13 chr13 16070787 16071096 -103673802 - AluJo SINE Alu -6 306 1 2267 91 0 0 chr13 16071628 16071925 -103672973 - AluSx SINE Alu -15 297 1 545 230 40 8 chr13 16072072 16072198 -103672700 - FLAM_A SINE Alu -3 130 1 711 219 20 13 chr13 16072249 16072400 -103672498 - FRAM SINE Alu -14 162 11 338 97 0 32 chr13 16072758 16072820 -103672078 - L1PA16 LINE L1 -9 6157 6098 2109 100 43 0 chr13 16072822 16073121 -103671777 - AluSx SINE Alu 0 312 1 475 130 0 0 chr13 16073503 16073572 -103671326 - AluS SINE Alu -242 70 2 1602 173 3 22 chr13 16073600 16073918 -103670980 - AluSx SINE Alu 0 312 1 315 118 29 59 chr13 16073918 16073935 -103670963 - L1M LINE L1 -861 5323 5307 868 146 0 8 chr13 16073935 16074065 -103670833 - FLAM_C SINE Alu -4 129 1 315 118 29 59 chr13 16074065 16074115 -103670783 - L1M LINE L1 -877 5307 5258 1951 119 3 7 chr13 16074156 16074449 -103670449 + AluSq SINE Alu 1 292 -21 390 156 12 0 chr13 16074453 16074527 -103670371 - L1 LINE L1 -887 5259 5180 375 275 72 62 chr13 16074527 16074720 -103670178 - L1MEd LINE L1 -5231 888 694 2087 183 70 47 chr13 16074742 16075169 -103669729 + MER31A LTR ERV1 1 441 -44 2195 76 10 16 chr13 16075169 16075483 -103669415 - AluSx SINE Alu 0 312 1 2087 183 70 47 chr13 16075483 16075525 -103669373 + MER31A LTR ERV1 441 481 -4 2271 83 10 6 chr13 16075572 16075884 -103669014 - AluSp SINE Alu 0 313 1 568 190 127 16 chr13 16076015 16076346 -103668552 + MER39 LTR ERV1 4 445 -262 765 210 0 0 chr13 16076367 16076505 -103668393 - FRAM SINE Alu -36 140 3 207 0 0 0 chr13 16076511 16076534 -103668364 + (A)n Simple_repeat Simple_repeat 1 23 0 1920 142 17 0 chr13 16076536 16076832 -103668066 + AluSx SINE Alu 1 301 -11 640 254 53 37 chr13 16076832 16077021 -103667877 - MER21B LTR ERV1 -351 512 321 2055 103 13 17 chr13 16077036 16077338 -103667560 - AluSx SINE Alu -11 301 1 1215 97 16 3 chr13 16077404 16077597 -103667301 - LTR56 LTR ERV1 0 445 270 2144 120 0 7 chr13 16077605 16077913 -103666985 + AluSx SINE Alu 6 311 -1 820 154 0 0 chr13 16077915 16078038 -103666860 - AluJo/FLAM SINE Alu -187 125 3 513 155 21 10 chr13 16078038 16078135 -103666763 - LTR56 LTR ERV1 -303 142 45 1258 148 6 107 chr13 16078136 16078367 -103666531 - AluJo SINE Alu 0 312 124 2258 87 0 0 chr13 16078367 16078665 -103666233 + AluY SINE Alu 1 298 -13 1258 148 6 107 chr13 16078665 16078770 -103666128 - AluJo SINE Alu -188 124 10 296 65 0 43 chr13 16078785 16078831 -103666067 - LTR56 LTR ERV1 -394 51 8 305 181 24 60 chr13 16078833 16078916 -103665982 - MER21B LTR ERV1 -655 208 129 277 203 29 58 chr13 16078979 16079048 -103665850 - MER21B LTR ERV1 -755 108 42 566 171 9 9 chr13 16079062 16079167 -103665731 + FRAM SINE Alu 20 124 -52 207 88 0 0 chr13 16079183 16079217 -103665681 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 254 254 45 37 chr13 16079275 16079409 -103665489 - L1MEd LINE L1 -5981 138 4 1269 168 10 69 chr13 16079436 16079555 -103665343 + AluJb SINE Alu 1 125 -187 1926 131 3 7 chr13 16079555 16079860 -103665038 + AluSg SINE Alu 1 304 -6 1269 168 10 69 chr13 16079860 16079894 -103665004 + AluJb SINE Alu 125 159 -153 2149 104 7 0 chr13 16079894 16080191 -103664707 + AluSp SINE Alu 1 299 -14 1269 168 10 69 chr13 16080191 16080340 -103664558 + AluJb SINE Alu 159 286 -26 23 33 0 0 chr13 16080406 16080436 -103664462 + AT_rich Low_complexity Low_complexity 1 30 0 706 279 81 38 chr13 16080440 16080632 -103664266 - L2 LINE L2 -639 2675 2493 2501 52 0 13 chr13 16080632 16080942 -103663956 + AluY SINE Alu 1 306 -5 706 279 81 38 chr13 16080942 16081118 -103663780 - L2 LINE L2 -821 2493 2291 1885 120 43 7 chr13 16081143 16081443 -103663455 - AluSp SINE Alu -2 311 1 205 151 57 19 chr13 16081508 16081561 -103663337 + T-rich Low_complexity Low_complexity 5 59 0 1864 135 26 0 chr13 16081571 16081875 -103663023 - AluSx SINE Alu 0 312 1 1991 117 6 22 chr13 16081930 16082247 -103662651 - AluSx SINE Alu 0 312 1 307 183 19 135 chr13 16082260 16082327 -103662571 + MIR SINE MIR 60 112 -150 2250 87 0 16 chr13 16082327 16082639 -103662259 - AluY SINE Alu -4 307 1 307 183 19 135 chr13 16082639 16082675 -103662223 + MIR SINE MIR 112 151 -111 745 101 10 0 chr13 16082678 16082777 -103662121 + AluSq/x SINE Alu 4 103 -210 771 90 0 0 chr13 16082899 16082999 -103661899 - AluSp/q SINE Alu -19 294 195 229 298 32 21 chr13 16083036 16083130 -103661768 - HAL1 LINE L1 -2003 504 410 422 287 138 11 chr13 16083190 16083371 -103661527 - HAL1 LINE L1 -2198 309 106 1833 130 3 7 chr13 16083434 16083719 -103661179 - AluJb SINE Alu -7 305 22 1692 161 7 3 chr13 16083819 16083996 -103660902 - AluJo SINE Alu -2 310 135 182 61 0 30 chr13 16083996 16084029 -103660869 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1601 156 18 14 chr13 16084029 16084311 -103660587 - AluJo SINE Alu -29 283 1 1692 161 7 3 chr13 16084311 16084437 -103660461 - AluJo SINE Alu -176 136 5 2495 48 0 0 chr13 16084909 16085218 -103659680 - AluY SINE Alu -2 309 1 970 165 0 12 chr13 16085218 16085374 -103659524 - AluSg/x SINE Alu -15 295 140 2115 107 3 0 chr13 16085383 16085674 -103659224 - AluSp SINE Alu -11 302 11 297 285 146 18 chr13 16085683 16085848 -103659050 - MIR SINE MIR -1 261 76 2251 75 0 22 chr13 16085995 16086313 -103658585 - AluY SINE Alu 0 311 1 1844 80 109 4 chr13 16086324 16086598 -103658300 - AluSg SINE Alu -7 303 1 2241 91 3 0 chr13 16087154 16087451 -103657447 - AluY SINE Alu -13 298 1 29 0 0 0 chr13 16087977 16088006 -103656892 + AT_rich Low_complexity Low_complexity 1 29 0 1869 124 0 24 chr13 16088014 16088331 -103656567 + AluSq SINE Alu 1 310 0 32 26 0 0 chr13 16088376 16088415 -103656483 + AT_rich Low_complexity Low_complexity 1 39 0 1908 122 0 34 chr13 16088629 16088956 -103655942 + AluSq SINE Alu 1 317 0 198 0 0 0 chr13 16089706 16089728 -103655170 + (CAT)n Simple_repeat Simple_repeat 1 22 0 261 287 136 10 chr13 16090389 16090550 -103654348 - MIR SINE MIR -32 230 44 1565 183 0 14 chr13 16090560 16090855 -103654043 - AluJo SINE Alu -21 291 1 300 226 89 8 chr13 16091160 16091284 -103653614 - AluSq/x SINE Alu -167 136 3 2099 96 38 0 chr13 16091551 16091842 -103653056 - AluSx SINE Alu -10 302 1 464 286 24 16 chr13 16091842 16091968 -103652930 + HAL1 LINE L1 1039 1165 -1342 252 0 0 0 chr13 16092040 16092068 -103652830 + (TG)n Simple_repeat Simple_repeat 2 29 0 831 206 6 6 chr13 16092089 16092249 -103652649 - FRAM SINE Alu -5 161 2 1681 157 17 27 chr13 16092263 16092556 -103652342 - AluJb SINE Alu -22 290 1 25 75 0 0 chr13 16094277 16094330 -103650568 + GC_rich Low_complexity Low_complexity 1 53 0 1532 95 26 35 chr13 16096235 16096467 -103648431 + MER30 DNA MER1_type 1 230 0 315 263 114 57 chr13 16097001 16097176 -103647722 + MIR SINE MIR 6 190 -72 1054 148 6 0 chr13 16097176 16097345 -103647553 + AluSg/x SINE Alu 130 299 -11 964 163 9 62 chr13 16097451 16097678 -103647220 + AluJo SINE Alu 91 305 -7 276 195 53 62 chr13 16097695 16097808 -103647090 + L1M4 LINE L1 4229 4340 -1806 2385 74 0 0 chr13 16097855 16098154 -103646744 + AluSp SINE Alu 1 299 -14 2198 105 0 0 chr13 16098417 16098713 -103646185 - AluSx SINE Alu -16 296 1 1582 181 37 10 chr13 16098713 16099012 -103645886 + MER65C LTR ERV1 155 461 0 842 249 39 55 chr13 16099030 16099445 -103645453 - L1MC5 LINE L1 -889 6919 6571 2016 116 0 0 chr13 16099532 16099838 -103645060 - AluSx SINE Alu 0 306 1 21 0 0 0 chr13 16099916 16099937 -103644961 + AT_rich Low_complexity Low_complexity 1 21 0 1785 141 13 19 chr13 16100293 16100606 -103644292 + AluJb SINE Alu 1 311 -1 1344 198 32 8 chr13 16100668 16100921 -103643977 - MLT1F1 LTR MaLR -11 556 298 1619 166 63 0 chr13 16100941 16101225 -103643673 - AluJo SINE Alu -10 302 1 244 123 0 53 chr13 16101241 16101298 -103643600 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 397 170 0 20 chr13 16101465 16101565 -103643333 + CT-rich Low_complexity Low_complexity 1 98 0 2066 97 0 67 chr13 16101565 16101895 -103643003 - AluSx SINE Alu -4 308 1 524 244 37 0 chr13 16101897 16102032 -103642866 - MLT1F1 LTR MaLR -427 140 1 366 305 73 13 chr13 16102206 16102357 -103642541 + L1M4 LINE L1 2271 2430 -3716 705 159 153 32 chr13 16102373 16102530 -103642368 - FRAM SINE Alu 0 40 1 318 326 91 23 chr13 16102719 16102894 -103642004 + L1M4 LINE L1 2689 2875 -3271 1190 194 8 28 chr13 16102941 16103188 -103641710 - AluJb SINE Alu -13 299 58 2059 123 3 0 chr13 16103237 16103537 -103641361 + AluSx SINE Alu 1 301 -11 1123 248 111 46 chr13 16103570 16103685 -103641213 - L1MC4 LINE L1 -15 8027 7921 1788 154 7 10 chr13 16103685 16103990 -103640908 + AluSx SINE Alu 1 304 -8 1123 248 111 46 chr13 16103990 16104334 -103640564 - L1MC4 LINE L1 -121 7921 7538 2190 89 0 0 chr13 16104349 16104675 -103640223 - AluSg SINE Alu 0 326 1 190 289 0 0 chr13 16104685 16104737 -103640161 + MER5A DNA MER1_type 136 187 -2 186 167 0 125 chr13 16104850 16104898 -103640000 + MIR SINE MIR 220 261 -1 359 199 82 110 chr13 16104900 16105046 -103639852 + MIR3 SINE MIR 45 186 -22 1658 166 43 7 chr13 16105176 16105355 -103639543 - AluJo SINE Alu 0 312 116 192 40 0 0 chr13 16105355 16105380 -103639518 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1658 166 43 7 chr13 16105380 16105501 -103639397 - AluJo SINE Alu -196 116 1 675 252 41 49 chr13 16105501 16105747 -103639151 - MLT1D LTR MaLR -261 244 1 2263 140 79 0 chr13 16105776 16106154 -103638744 + L1PA16 LINE L1 5374 5781 -385 602 175 0 0 chr13 16106155 16106252 -103638646 + U13 snRNA snRNA 1 97 -7 1246 109 18 68 chr13 16106253 16106317 -103638581 + L1PA16 LINE L1 5769 5835 -331 2261 89 0 0 chr13 16106317 16106620 -103638278 + AluSc SINE Alu 2 304 -5 1246 109 18 68 chr13 16106620 16106775 -103638123 + L1PA16 LINE L1 5835 5977 -189 1067 89 0 7 chr13 16106877 16107023 -103637875 - AluSq/x SINE Alu -168 145 1 2012 119 3 3 chr13 16107024 16107318 -103637580 - AluSx SINE Alu -18 294 1 4721 171 29 102 chr13 16107332 16107568 -103637330 - L1MB3 LINE L1 -7 6176 5924 1640 180 35 96 chr13 16107568 16107640 -103637258 - MSTB1 LTR MaLR 0 432 357 2287 45 48 0 chr13 16107640 16107931 -103636967 + AluY SINE Alu 1 305 -6 1640 180 35 96 chr13 16107931 16108318 -103636580 - MSTB1 LTR MaLR -75 357 1 4721 171 29 102 chr13 16108318 16108752 -103636146 - L1MB3 LINE L1 -259 5924 5460 2190 108 0 0 chr13 16108752 16109048 -103635850 - AluSx SINE Alu -16 296 1 4721 171 29 102 chr13 16109048 16109213 -103635685 - L1MB3 LINE L1 -723 5460 5285 2156 98 30 0 chr13 16109213 16109508 -103635390 - AluSq SINE Alu -9 304 1 4721 171 29 102 chr13 16109508 16109993 -103634905 - L1MB3 LINE L1 -898 5285 4881 712 194 0 50 chr13 16109993 16110132 -103634766 + AluJo SINE Alu 5 136 -176 4721 171 29 102 chr13 16110132 16110440 -103634458 - L1MB3 LINE L1 -1302 4881 4552 2460 204 12 39 chr13 16110440 16110951 -103633947 + MLT2B2 LTR ERVL 1 497 -18 1391 205 32 63 chr13 16110952 16111126 -103633772 - L1MB3 LINE L1 -1583 4563 4385 2036 108 7 3 chr13 16111126 16111423 -103633475 - AluSx SINE Alu -14 298 1 1391 205 32 63 chr13 16111423 16111576 -103633322 - L1MB3 LINE L1 -1761 4385 4251 2161 105 7 0 chr13 16111576 16111882 -103633016 - AluSg SINE Alu -2 308 1 1391 205 32 63 chr13 16111882 16111996 -103632902 - L1MB3 LINE L1 -1895 4251 4135 569 152 0 10 chr13 16112037 16112136 -103632762 + AluSx SINE Alu 2 99 -213 1460 113 5 0 chr13 16112259 16112462 -103632436 + AluSx SINE Alu 87 290 -22 518 106 75 32 chr13 16112472 16112566 -103632332 + MER20 DNA MER1_type 49 146 -73 268 241 152 73 chr13 16112653 16112844 -103632054 - L2 LINE L2 -1131 2183 1978 1920 124 0 0 chr13 16112860 16113164 -103631734 - AluSx SINE Alu 0 304 1 2314 86 10 0 chr13 16113194 16113498 -103631400 - AluY SINE Alu -4 307 1 462 36 0 0 chr13 16113515 16113571 -103631327 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1854 115 0 0 chr13 16113592 16113853 -103631045 - AluSq SINE Alu -52 261 1 312 296 120 42 chr13 16113862 16114004 -103630894 - MIR SINE MIR -72 190 38 * 463 306 10 31 chr13 16113943 16114136 -103630762 - L2 LINE L2 -1340 1974 1786 2092 105 0 3 chr13 16114136 16114431 -103630467 - AluSx SINE Alu -18 294 1 2261 82 13 0 chr13 16114438 16114743 -103630155 - AluY SINE Alu -2 309 1 1049 75 0 0 chr13 16114744 16114877 -103630021 - AluSq/x SINE Alu -179 133 1 909 286 58 48 chr13 16114948 16115346 -103629552 - L2 LINE L2 -2739 575 174 2165 94 10 3 chr13 16115364 16115662 -103629236 + AluSq SINE Alu 1 300 -13 1703 127 8 4 chr13 16115800 16116068 -103628830 - AluSq SINE Alu -44 269 1 2265 204 87 15 chr13 16116068 16116607 -103628291 - L1ME1 LINE L1 -32 6134 5557 488 161 58 0 chr13 16116658 16116745 -103628153 + MER58B DNA MER1_type 250 341 0 2181 67 7 7 chr13 16117007 16117333 -103627565 + AluSg SINE Alu 1 326 0 626 126 11 0 chr13 16118796 16118891 -103626007 - AluJo SINE Alu -177 135 40 1243 96 138 0 chr13 16119220 16119408 -103625490 + AluSg/x SINE Alu 82 295 -15 1732 111 62 21 chr13 16119425 16119713 -103625185 - AluJo SINE Alu -12 300 1 6193 72 7 59 chr13 16119763 16121074 -103623824 - SVA Other Other -551 1384 433 2155 75 18 0 chr13 16121184 16121464 -103623434 + AluY SINE Alu 10 294 -17 364 243 33 92 chr13 16121464 16121510 -103623388 - L1ME2 LINE L1 -21 6143 6096 1457 191 38 17 chr13 16121510 16121803 -103623095 - AluJb SINE Alu -13 299 1 364 243 33 92 chr13 16121803 16121908 -103622990 - L1ME2 LINE L1 -68 6096 6001 2196 93 0 3 chr13 16121911 16122213 -103622685 - AluY SINE Alu -10 301 1 1166 172 14 28 chr13 16122383 16122598 -103622300 + MER2 DNA MER2_type 1 212 -133 2092 93 3 50 chr13 16122602 16122925 -103621973 - AluSg SINE Alu -2 308 1 691 197 0 29 chr13 16122951 16123088 -103621810 - AluJo SINE Alu -178 134 2 239 196 0 54 chr13 16123136 16123147 -103621751 + MER2 DNA MER2_type 268 278 -67 1913 139 0 16 chr13 16123147 16123464 -103621434 - AluSx SINE Alu 0 312 1 239 196 0 54 chr13 16123464 16123508 -103621390 + MER2 DNA MER2_type 278 320 -25 1492 163 25 18 chr13 16124029 16124306 -103620592 + AluJo SINE Alu 5 283 -29 1951 120 43 3 chr13 16124444 16124743 -103620155 + AluSx SINE Alu 1 311 -1 2000 122 10 0 chr13 16124797 16125101 -103619797 - AluSx SINE Alu -5 307 1 1683 103 84 7 chr13 16126079 16126352 -103618546 + AluSx SINE Alu 5 298 -14 1050 171 11 0 chr13 16126352 16126533 -103618365 + AluSg/x SINE Alu 106 288 -22 1902 130 3 3 chr13 16126543 16126851 -103618047 + AluSx SINE Alu 1 308 -4 527 125 0 0 chr13 16126908 16126980 -103617918 + FRAM SINE Alu 22 93 -83 34 24 0 0 chr13 16126990 16127031 -103617867 + AT_rich Low_complexity Low_complexity 1 41 0 1881 96 9 92 chr13 16127060 16127266 -103617632 - AluSx SINE Alu -5 307 138 1516 115 0 0 chr13 16127266 16127475 -103617423 - AluSx SINE Alu -103 209 1 1881 96 9 92 chr13 16127475 16127603 -103617295 - AluSx SINE Alu -174 138 1 2583 196 100 70 chr13 16127604 16128216 -103616682 - L1ME2 LINE L1 -57 6107 5515 1871 97 45 39 chr13 16128216 16128419 -103616479 - AluSp SINE Alu -2 311 104 2327 49 7 0 chr13 16128419 16128707 -103616191 - AluY SINE Alu -21 290 1 1871 97 45 39 chr13 16128707 16128812 -103616086 - AluSp SINE Alu -209 104 1 1626 174 3 16 chr13 16128821 16129126 -103615772 - AluSx SINE Alu -9 303 3 2583 196 100 70 chr13 16129126 16129310 -103615588 - L1ME2 LINE L1 -656 5508 5331 2316 72 3 7 chr13 16129310 16129615 -103615283 - AluY SINE Alu -7 304 1 2583 196 100 70 chr13 16129615 16129721 -103615177 - L1ME2 LINE L1 -833 5331 5230 1637 165 0 38 chr13 16129721 16130037 -103614861 - AluJo SINE Alu 0 312 9 2583 196 100 70 chr13 16130037 16130318 -103614580 - L1ME2 LINE L1 -934 5230 4882 330 270 92 0 chr13 16130342 16130494 -103614404 - L1ME2 LINE L1 -1330 4816 4651 31 0 0 0 chr13 16130790 16130821 -103614077 + AT_rich Low_complexity Low_complexity 1 31 0 341 104 0 0 chr13 16130821 16130869 -103614029 - AluSq/x SINE Alu -170 133 86 901 177 9 64 chr13 16130869 16131089 -103613809 - AluJo SINE Alu -92 220 13 859 218 0 0 chr13 16131101 16131275 -103613623 - AluJb SINE Alu -5 307 134 1304 198 70 4 chr13 16131297 16131570 -103613328 - AluJb SINE Alu -21 291 1 255 31 0 0 chr13 16131575 16131607 -103613291 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1827 148 0 0 chr13 16131607 16131890 -103613008 - AluSx SINE Alu -29 283 1 674 218 46 25 chr13 16132269 16132355 -103612543 + Looper DNA T2_type 65 148 -1410 736 168 64 0 chr13 16132355 16132480 -103612418 + FLAM_A SINE Alu 1 133 0 674 218 46 25 chr13 16132480 16132614 -103612284 + Looper DNA T2_type 148 293 -1265 198 0 0 0 chr13 16132614 16132636 -103612262 + (TAA)n Simple_repeat Simple_repeat 1 22 0 674 218 46 25 chr13 16132636 16132653 -103612245 + Looper DNA T2_type 293 308 -1250 1201 152 5 0 chr13 16132653 16132844 -103612054 - AluSg/x SINE Alu -25 287 96 387 205 37 81 chr13 16132855 16133016 -103611882 + Looper DNA T2_type 284 437 -1121 1222 165 0 19 chr13 16133029 16133241 -103611657 + AluJb SINE Alu 87 294 -18 889 179 25 6 chr13 16133279 16133441 -103611457 - FRAM SINE Alu -1 165 1 1692 158 10 17 chr13 16133965 16134262 -103610636 - AluSx SINE Alu -17 295 1 342 237 118 77 chr13 16134274 16134443 -103610455 - MIR SINE MIR -13 249 74 883 194 0 0 chr13 16134663 16134823 -103610075 + AluJb SINE Alu 139 298 -14 1929 111 35 3 chr13 16134863 16135151 -103609747 - AluSq SINE Alu -16 297 1 2046 106 0 14 chr13 16135412 16135705 -103609193 - AluSg SINE Alu -21 289 1 1205 189 62 38 chr13 16136815 16136974 -103607924 - AluJo SINE Alu -9 303 132 2320 80 0 3 chr13 16136974 16137274 -103607624 - AluSg SINE Alu -11 299 1 1205 189 62 38 chr13 16137274 16137405 -103607493 - AluJo SINE Alu -180 132 6 2000 125 0 0 chr13 16137437 16137726 -103607172 - AluSx SINE Alu -14 298 10 1907 131 0 3 chr13 16138104 16138394 -103606504 - AluSx SINE Alu -15 297 9 1109 154 0 10 chr13 16138801 16138996 -103605902 - AluSg/x SINE Alu 0 310 118 2204 92 0 10 chr13 16139126 16139430 -103605468 - AluSx SINE Alu -11 301 1 2402 55 3 0 chr13 16139656 16139948 -103604950 - AluY SINE Alu -18 293 1 1668 105 158 0 chr13 16140196 16140462 -103604436 - MER51B LTR ERV1 -69 308 1 1599 135 0 4 chr13 16140474 16140703 -103604195 - MER51B-int LTR ERV1 -11 7805 7578 1046 98 0 46 chr13 16140704 16140825 -103604073 - MER51B-int LTR ERV1 -1565 6251 6139 2124 95 7 7 chr13 16140825 16141131 -103603767 - AluY SINE Alu -4 307 2 1046 98 0 46 chr13 16141131 16141183 -103603715 - MER51B-int LTR ERV1 -1677 6139 6086 2045 98 21 3 chr13 16141185 16141471 -103603427 + AluSg SINE Alu 1 291 -19 463 127 0 0 chr13 16141479 16141550 -103603348 - MER51B-int LTR ERV1 -4616 3200 3130 266 86 0 0 chr13 16141542 16141577 -103603321 - MER51B-int LTR ERV1 -7781 35 1 * 959 99 106 7 chr13 16141577 16141728 -103603170 - MER51B LTR ERV1 0 377 212 2024 113 7 3 chr13 16141734 16142025 -103602873 - AluSx SINE Alu -20 292 1 502 278 40 30 chr13 16142096 16142340 -103602558 - L2 LINE L2 -1011 2303 1988 2122 114 7 0 chr13 16142374 16142672 -103602226 - AluSq SINE Alu -13 300 1 1713 175 0 9 chr13 16142714 16143029 -103601869 - AluJb SINE Alu 0 312 1 2268 52 45 0 chr13 16143240 16143526 -103601372 + AluSx SINE Alu 1 299 -13 2178 106 6 3 chr13 16143594 16143906 -103600992 + AluSq SINE Alu 1 313 0 23 0 0 0 chr13 16143996 16144019 -103600879 + AT_rich Low_complexity Low_complexity 1 23 0 1236 170 48 65 chr13 16144450 16144676 -103600222 + AluJb SINE Alu 1 222 -90 2069 112 7 7 chr13 16144676 16144979 -103599919 - AluSq SINE Alu -10 303 1 1236 170 48 65 chr13 16144979 16145046 -103599852 + AluJb SINE Alu 222 289 -23 1863 140 0 7 chr13 16145094 16145416 -103599482 + AluSg SINE Alu 1 310 0 410 258 11 0 chr13 16145425 16145514 -103599384 + AluJ/FLAM SINE Alu 1 90 -212 205 252 102 88 chr13 16145616 16145763 -103599135 - L2 LINE L2 -1 3312 3164 2216 85 0 3 chr13 16145910 16146204 -103598694 - AluY SINE Alu -18 293 1 181 333 62 21 chr13 16146267 16146363 -103598535 + MIR SINE MIR 12 111 -151 2166 88 10 0 chr13 16146914 16147208 -103597690 + AluSp SINE Alu 4 300 -13 1182 126 0 11 chr13 16147519 16147710 -103597188 - AluSg/x SINE Alu -1 311 123 1084 101 42 18 chr13 16148180 16148348 -103596550 + AluSq SINE Alu 133 304 -9 1863 132 0 39 chr13 16148436 16148609 -103596289 - AluSx SINE Alu -13 299 142 1948 124 0 20 chr13 16148609 16148915 -103595983 - AluSx SINE Alu -12 300 1 1863 132 0 39 chr13 16148915 16149052 -103595846 - AluSx SINE Alu -170 142 1 210 333 20 50 chr13 16149077 16149176 -103595722 - MER5A DNA MER1_type 0 189 94 181 322 138 0 chr13 16149326 16149413 -103595485 - L2 LINE L2 0 3272 3174 1949 139 6 19 chr13 16149732 16150048 -103594850 - AluSx SINE Alu 0 312 1 1690 183 7 3 chr13 16150349 16150639 -103594259 + AluJo SINE Alu 1 291 -21 232 249 97 48 chr13 16150688 16150853 -103594045 - L1MC/D LINE L1 -1973 5835 5663 2211 91 7 0 chr13 16150854 16151152 -103593746 - AluSp SINE Alu -13 300 1 1704 127 90 0 chr13 16151270 16151537 -103593361 - AluSx SINE Alu -21 291 1 1959 120 0 13 chr13 16151545 16151844 -103593054 - AluSg SINE Alu -1 309 15 986 86 0 0 chr13 16151846 16151985 -103592913 + AluSc SINE Alu 171 309 0 1681 87 0 4 chr13 16152130 16152360 -103592538 + AluY SINE Alu 70 298 -13 1674 131 8 4 chr13 16152660 16152920 -103591978 - AluSx SINE Alu -27 285 25 2361 101 0 0 chr13 16153117 16153424 -103591474 + AluSg SINE Alu 1 307 -3 800 191 0 7 chr13 16153698 16153845 -103591053 + FRAM SINE Alu 20 165 -11 2268 81 0 0 chr13 16153858 16154142 -103590756 - AluSp SINE Alu -17 296 13 24 32 0 0 chr13 16154764 16154795 -103590103 + AT_rich Low_complexity Low_complexity 1 31 0 1909 155 7 0 chr13 16155226 16155523 -103589375 - AluSx SINE Alu -13 299 1 865 114 16 0 chr13 16155523 16155646 -103589252 - AluJb SINE Alu -175 137 13 379 120 160 27 chr13 16155703 16155801 -103589097 - AluS SINE Alu -242 57 1 2021 136 0 0 chr13 16155843 16156130 -103588768 - AluSx SINE Alu -25 287 1 2227 105 3 0 chr13 16156806 16157101 -103587797 + AluSx SINE Alu 1 296 -16 2520 44 3 0 chr13 16157621 16157918 -103586980 - AluSp SINE Alu -15 298 1 608 250 81 17 chr13 16157926 16158098 -103586800 + MER5A DNA MER1_type 7 189 0 22 0 0 0 chr13 16158098 16158120 -103586778 + AT_rich Low_complexity Low_complexity 1 22 0 2054 107 17 10 chr13 16158214 16158514 -103586384 - AluSq SINE Alu -11 302 1 858 181 100 35 chr13 16158654 16158914 -103585984 + L1MC4a LINE L1 6161 6437 -1371 1044 177 45 36 chr13 16158940 16159053 -103585845 - MER2 DNA MER2_type -4 341 231 2431 70 3 0 chr13 16159053 16159354 -103585544 - AluY SINE Alu -9 302 1 1044 177 45 36 chr13 16159354 16159460 -103585438 - MER2 DNA MER2_type -114 231 120 * 1111 161 92 9 chr13 16159458 16159676 -103585222 - MER2 DNA MER2_type -109 236 1 429 180 170 160 chr13 16159676 16159890 -103585008 + L1MC4 LINE L1 6479 6698 -1344 1604 173 14 32 chr13 16159890 16160174 -103584724 - AluJo SINE Alu -30 282 4 429 180 170 160 chr13 16160174 16160259 -103584639 + L1MC4 LINE L1 6698 6781 -1261 2188 189 78 69 chr13 16160260 16160725 -103584173 + L1MC4a LINE L1 7107 7566 -242 2191 110 0 0 chr13 16160725 16161007 -103583891 + 7SLRNA srpRNA srpRNA 20 301 -19 221 83 28 0 chr13 16161007 16161043 -103583855 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2188 189 78 69 chr13 16161043 16161216 -103583682 + L1MC4a LINE L1 7565 7752 -56 2446 81 0 0 chr13 16161269 16161578 -103583320 - AluY SINE Alu -2 309 1 1183 251 17 14 chr13 16161850 16162137 -103582761 + AluJo SINE Alu 1 288 -14 250 161 280 0 chr13 16162289 16162382 -103582516 - Charlie1 DNA MER1_type -6 2755 2637 1330 205 3 53 chr13 16162384 16162439 -103582459 + AluJo SINE Alu 1 57 -255 2056 132 3 3 chr13 16162439 16162734 -103582164 + AluSx SINE Alu 1 295 -17 1330 205 3 53 chr13 16162734 16162981 -103581917 + AluJo SINE Alu 57 288 -24 1761 129 0 50 chr13 16162991 16163270 -103581628 + AluSx SINE Alu 3 267 -45 2342 56 7 0 chr13 16163323 16163610 -103581288 + AluY SINE Alu 3 291 -20 2114 120 3 0 chr13 16164110 16164411 -103580487 - AluSq SINE Alu -11 302 1 1139 114 0 13 chr13 16164423 16164612 -103580286 - AluSg/x SINE Alu 0 310 132 2220 117 0 0 chr13 16164612 16164921 -103579977 - AluSx SINE Alu -3 309 1 207 354 12 12 chr13 16164939 16165021 -103579877 - L2 LINE L2 -6 3266 3185 981 194 67 121 chr13 16165472 16165653 -103579245 - AluJb SINE Alu -4 298 140 2147 129 0 7 chr13 16165653 16165962 -103578936 - AluSx SINE Alu -5 307 1 981 194 67 121 chr13 16165962 16166095 -103578803 - AluJb SINE Alu -162 140 1 344 348 106 18 chr13 16166126 16166399 -103578499 - L1MC4a LINE L1 -1907 5901 5605 2241 113 3 0 chr13 16166484 16166795 -103578103 - AluSx SINE Alu 0 312 1 637 246 64 6 chr13 16166828 16166999 -103577899 + MER46C DNA MER2_type 69 249 -89 693 181 88 113 chr13 16167568 16167726 -103577172 - MER46A DNA MER2_type -2499 232 79 1636 160 14 18 chr13 16167726 16168032 -103576866 + AluJb SINE Alu 1 305 0 693 181 88 113 chr13 16168032 16168110 -103576788 - MER46A DNA MER2_type -2652 79 1 1959 130 43 0 chr13 16168466 16168765 -103576133 - AluSx SINE Alu 0 312 1 337 199 121 28 chr13 16169574 16169715 -103575183 - L1MC5 LINE L1 -118 7843 7690 2340 101 0 0 chr13 16169890 16170186 -103574712 - AluSx SINE Alu -16 296 1 27 49 0 0 chr13 16170523 16170564 -103574334 + AT_rich Low_complexity Low_complexity 1 41 0 423 0 0 0 chr13 16170954 16171001 -103573897 + (TG)n Simple_repeat Simple_repeat 2 48 0 2335 113 0 0 chr13 16172020 16172329 -103572569 - AluSq SINE Alu -4 309 1 615 183 122 0 chr13 16172702 16172817 -103572081 - FLAM_A SINE Alu -4 129 1 276 318 81 52 chr13 16172966 16173139 -103571759 - MER5B DNA MER1_type 0 178 1 982 187 43 66 chr13 16173283 16173540 -103571358 - AluJo SINE Alu -39 273 23 446 178 28 161 chr13 16173757 16173805 -103571093 + MER58B DNA MER1_type 186 239 -2181 206 32 32 0 chr13 16173805 16173836 -103571062 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 446 178 28 161 chr13 16173836 16173967 -103570931 + MER58B DNA MER1_type 239 341 0 2080 104 0 48 chr13 16174250 16174413 -103570485 - AluSg SINE Alu -16 294 151 2286 90 3 7 chr13 16174413 16174723 -103570175 - AluSc SINE Alu 0 309 1 2080 104 0 48 chr13 16174723 16174868 -103570030 - AluSg SINE Alu -159 151 1 26 0 0 0 chr13 16176297 16176323 -103568575 + AT_rich Low_complexity Low_complexity 1 26 0 2090 117 0 4 chr13 16176332 16176613 -103568285 - AluSx SINE Alu -32 280 1 2224 119 0 0 chr13 16176619 16176929 -103567969 - AluSq SINE Alu -3 310 1 1673 162 14 24 chr13 16176934 16177224 -103567674 - AluJo SINE Alu -23 289 3 25 31 0 0 chr13 16178133 16178165 -103566733 + AT_rich Low_complexity Low_complexity 1 32 0 684 160 0 17 chr13 16179463 16179582 -103565316 + FLAM_A SINE Alu 5 121 -12 586 157 19 9 chr13 16179974 16180082 -103564816 + FLAM_A SINE Alu 1 109 -33 22 0 0 0 chr13 16180088 16180110 -103564788 + AT_rich Low_complexity Low_complexity 1 22 0 4460 176 40 5 chr13 16180162 16181033 -103563865 - L1MC1 LINE L1 -17 6316 5415 689 257 7 0 chr13 16181392 16181544 -103563354 - FRAM SINE Alu -23 153 1 1908 130 10 30 chr13 16181554 16181713 -103563185 - AluSx SINE Alu -18 294 142 2105 125 3 3 chr13 16181713 16182018 -103562880 - AluSx SINE Alu -7 305 1 1908 130 10 30 chr13 16182018 16182158 -103562740 - AluSx SINE Alu -170 142 1 248 146 0 0 chr13 16182362 16182410 -103562488 - Alu SINE Alu 0 299 252 861 121 0 0 chr13 16182410 16182534 -103562364 - AluSq/x SINE Alu -189 124 1 1163 150 0 5 chr13 16183208 16183395 -103561503 - MER46B DNA MER2_type -3 233 48 2286 70 0 3 chr13 16183399 16183685 -103561213 - AluY SINE Alu -1 310 26 678 203 16 0 chr13 16183704 16183827 -103561071 - FLAM_C SINE Alu -7 126 2 857 161 27 0 chr13 16183831 16183980 -103560918 - MER46B DNA MER2_type -183 53 26 300 206 99 84 chr13 16184191 16184322 -103560576 - Charlie1a DNA MER1_type -6 1449 1317 901 264 179 11 chr13 16184393 16184647 -103560251 - Charlie1a DNA MER1_type -1547 1214 1004 1802 178 16 0 chr13 16184647 16184950 -103559948 + AluJb SINE Alu 1 308 -4 901 264 179 11 chr13 16184950 16185131 -103559767 - Charlie1a DNA MER1_type -1757 1004 706 * 1179 272 80 56 chr13 16185125 16185665 -103559233 - Charlie1a DNA MER1_type -902 553 1 186 43 0 0 chr13 16185873 16185896 -103559002 + (T)n Simple_repeat Simple_repeat 1 23 0 547 211 18 0 chr13 16186000 16186109 -103558789 + MIR SINE MIR 64 174 -88 1997 119 0 45 chr13 16187584 16187776 -103557122 - AluSq SINE Alu -17 296 122 2435 80 0 6 chr13 16187776 16188087 -103556811 - AluY SINE Alu -2 309 1 1997 119 0 45 chr13 16188087 16188204 -103556694 - AluSq SINE Alu -191 122 1 1738 168 7 10 chr13 16188301 16188599 -103556299 + AluJo SINE Alu 1 297 -15 21 71 0 0 chr13 16189559 16189601 -103555297 + AT_rich Low_complexity Low_complexity 1 42 0 1750 169 17 3 chr13 16190262 16190558 -103554340 - AluJo SINE Alu -9 303 4 23 0 0 0 chr13 16190992 16191015 -103553883 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 16192080 16192108 -103552790 + AT_rich Low_complexity Low_complexity 1 28 0 2279 85 3 7 chr13 16193934 16194229 -103550669 - AluSg SINE Alu -16 294 1 22 35 0 0 chr13 16194582 16194611 -103550287 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr13 16194694 16194721 -103550177 + AT_rich Low_complexity Low_complexity 1 27 0 308 268 36 18 chr13 16194917 16195029 -103549869 - MER104 DNA Tc2 -56 124 11 23 78 0 0 chr13 16198660 16198711 -103546187 + AT_rich Low_complexity Low_complexity 1 51 0 230 311 14 0 chr13 16199728 16199802 -103545096 - L1MC4 LINE L1 -152 7890 7816 338 169 15 15 chr13 16200173 16200238 -103544660 + AluJo SINE Alu 71 135 -167 180 77 0 0 chr13 16201119 16201145 -103543753 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 236 279 23 35 chr13 16201977 16202063 -103542835 - L2 LINE L2 0 3313 3229 757 220 57 17 chr13 16202113 16202290 -103542608 - MER5A DNA MER1_type -1 188 5 351 65 0 0 chr13 16202908 16202954 -103541944 + (TG)n Simple_repeat Simple_repeat 1 46 0 22 0 0 0 chr13 16203987 16204009 -103540889 + AT_rich Low_complexity Low_complexity 1 22 0 302 241 11 0 chr13 16204697 16204784 -103540114 + Charlie5 DNA MER1_type 26 113 -2499 * 1188 184 136 9 chr13 16204775 16205106 -103539792 + Charlie5 DNA MER1_type 2243 2615 0 231 167 0 0 chr13 16205248 16205290 -103539608 + (TATG)n Simple_repeat Simple_repeat 1 42 0 2715 39 0 0 chr13 16205292 16205600 -103539298 - AluY SINE Alu -3 308 1 23 0 0 0 chr13 16205884 16205907 -103538991 + AT_rich Low_complexity Low_complexity 1 23 0 397 284 89 78 chr13 16206916 16207033 -103537865 + L2 LINE L2 2593 2707 -607 1750 146 39 0 chr13 16207033 16207313 -103537585 + AluSx SINE Alu 5 295 -17 397 284 89 78 chr13 16207313 16207477 -103537421 + L2 LINE L2 2707 2877 -437 1922 142 3 3 chr13 16207518 16207806 -103537092 - AluSx SINE Alu -24 288 1 1547 149 54 58 chr13 16207907 16208202 -103536696 - AluJo SINE Alu -17 295 2 321 260 154 0 chr13 16208368 16208491 -103536407 - L2 LINE L2 -1 3312 3171 24 0 0 0 chr13 16212211 16212235 -103532663 + AT_rich Low_complexity Low_complexity 1 24 0 2168 101 3 17 chr13 16212235 16212523 -103532375 - AluSx SINE Alu -24 288 5 444 236 61 61 chr13 16212971 16213200 -103531698 - MER106A DNA MER1_type -5 231 3 436 279 91 20 chr13 16213219 16213416 -103531482 - L2 LINE L2 -519 2795 2585 21 0 0 0 chr13 16215692 16215713 -103529185 + AT_rich Low_complexity Low_complexity 1 21 0 1376 220 54 113 chr13 16215912 16216344 -103528554 - L1ME2 LINE L1 -150 6014 5656 1857 154 0 20 chr13 16216344 16216650 -103528248 - AluJo SINE Alu 0 312 13 1376 220 54 113 chr13 16216650 16216939 -103527959 - L1ME2 LINE L1 -508 5656 5352 22 35 0 0 chr13 16217260 16217289 -103527609 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr13 16218023 16218058 -103526840 + AT_rich Low_complexity Low_complexity 1 35 0 1873 167 10 0 chr13 16218207 16218506 -103526392 - AluJo SINE Alu -10 302 1 21 23 0 47 chr13 16219108 16219127 -103525771 + AT_rich Low_complexity Low_complexity 1 19 -22 2068 146 0 0 chr13 16219127 16219429 -103525469 + AluSx SINE Alu 1 302 -10 21 23 0 47 chr13 16219429 16219452 -103525446 + AT_rich Low_complexity Low_complexity 19 41 0 1311 214 85 25 chr13 16219665 16219923 -103524975 + MER2 DNA MER2_type 1 283 -62 1893 170 0 3 chr13 16219923 16220229 -103524669 - AluJb SINE Alu -7 305 1 1311 214 85 25 chr13 16220229 16220287 -103524611 + MER2 DNA MER2_type 283 336 -9 23 0 0 0 chr13 16220326 16220349 -103524549 + AT_rich Low_complexity Low_complexity 1 23 0 1791 180 10 0 chr13 16220388 16220683 -103524215 + AluJb SINE Alu 1 298 -14 259 289 82 30 chr13 16220895 16221030 -103523868 - Charlie7 DNA MER1_type -1 2611 2470 2556 50 3 0 chr13 16222191 16222489 -103522409 - AluY SINE Alu -12 299 1 201 273 40 71 chr13 16222744 16222843 -103522055 + MER5A DNA MER1_type 17 112 -77 400 224 131 3 chr13 16223047 16223169 -103521729 + MER5A DNA MER1_type 4 131 -47 1135 191 179 0 chr13 16226373 16226624 -103518274 - AluSx SINE Alu -16 296 1 192 77 0 0 chr13 16226917 16226943 -103517955 + (T)n Simple_repeat Simple_repeat 1 26 0 2275 92 3 0 chr13 16226999 16227293 -103517605 + AluSp SINE Alu 2 296 -17 1734 124 4 12 chr13 16228363 16228621 -103516277 + AluJb SINE Alu 42 297 -15 2125 118 10 3 chr13 16229632 16229928 -103514970 + AluSx SINE Alu 1 298 -14 868 163 7 0 chr13 16230098 16230245 -103514653 + AluSg/x SINE Alu 139 286 -26 409 269 50 50 chr13 16231227 16231368 -103513530 + L2 LINE L2 3169 3309 -4 263 196 0 0 chr13 16231385 16231431 -103513467 - MER81 DNA DNA -68 46 1 2173 209 83 6 chr13 16231700 16232232 -103512666 + L1MC1 LINE L1 5760 6332 -1 2233 96 0 0 chr13 16232280 16232562 -103512336 - AluSx SINE Alu -30 282 1 319 300 110 10 chr13 16233592 16233692 -103511206 + MIR SINE MIR 40 149 -113 1149 163 39 0 chr13 16235229 16235432 -103509466 + AluJb SINE Alu 64 274 -38 201 359 57 19 chr13 16236099 16236258 -103508640 + L2 LINE L2 3080 3244 -28 1625 161 73 4 chr13 16236902 16237175 -103507723 + AluJo SINE Alu 1 292 -20 2325 55 24 17 chr13 16237203 16237496 -103507402 + AluY SINE Alu 1 295 -16 751 224 6 6 chr13 16237968 16238124 -103506774 + Tigger1 DNA MER2_type 2 157 -2261 * 1045 124 129 16 chr13 16238113 16238307 -103506591 + Tigger1 DNA MER2_type 2202 2417 -1 777 144 30 23 chr13 16238331 16238463 -103506435 - FLAM_A SINE Alu 0 133 1 280 290 99 38 chr13 16238570 16238942 -103505956 + L1M4 LINE L1 4222 4616 -1530 2472 51 3 26 chr13 16239174 16239486 -103505412 + AluY SINE Alu 1 305 -6 1932 158 0 3 chr13 16239763 16240060 -103504838 - AluJb SINE Alu -16 296 1 344 283 147 28 chr13 16241425 16241602 -103503296 - MIR SINE MIR -56 206 9 975 105 7 7 chr13 16241855 16241998 -103502900 - AluSg/x SINE Alu -10 299 157 1112 99 0 7 chr13 16242064 16242206 -103502692 - AluSq/x SINE Alu -170 143 3 2237 102 27 0 chr13 16242299 16242594 -103502304 - AluSx SINE Alu -9 303 1 2298 100 0 3 chr13 16242663 16242964 -103501934 - AluSx SINE Alu -12 300 1 300 195 53 62 chr13 16243011 16243124 -103501774 - L1M4 LINE L1 -1806 4340 4229 993 168 12 6 chr13 16243141 16243308 -103501590 - FRAM SINE Alu -7 169 2 189 0 0 0 chr13 16243308 16243329 -103501569 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1610 142 67 8 chr13 16243338 16243605 -103501293 - AluSq SINE Alu -28 285 3 499 208 47 0 chr13 16243628 16243757 -103501141 - L1M4 LINE L1 -1958 4188 4054 820 139 16 0 chr13 16243758 16243887 -103501011 + AluJb SINE Alu 1 131 -181 234 0 0 0 chr13 16243943 16243969 -103500929 + (TGG)n Simple_repeat Simple_repeat 1 26 0 1622 189 28 0 chr13 16243969 16244248 -103500650 - AluJo SINE Alu -25 287 1 358 268 77 72 chr13 16244333 16244476 -103500422 - L1M4 LINE L1 -2311 3835 3689 2214 114 3 0 chr13 16244476 16244775 -103500123 - AluSp SINE Alu -13 300 1 358 268 77 72 chr13 16244775 16244866 -103500032 - L1M4 LINE L1 -2457 3689 3600 2089 91 21 14 chr13 16244959 16245245 -103499653 - L1PA7 LINE L1 -2 6152 5865 12541 100 20 31 chr13 16245245 16247309 -103497589 - L1P3 LINE L1 -4369 2092 5 2123 114 0 13 chr13 16247325 16247624 -103497274 - AluSg SINE Alu -15 295 1 976 191 12 18 chr13 16247724 16247892 -103497006 - FAM SINE Alu -8 167 1 1961 135 24 3 chr13 16247895 16248191 -103496707 - AluSx SINE Alu -10 302 1 316 253 41 68 chr13 16248450 16248596 -103496302 - L1MEd LINE L1 -5958 161 20 36 0 0 0 chr13 16250820 16250856 -103494042 + AT_rich Low_complexity Low_complexity 1 36 0 29 28 0 0 chr13 16251260 16251296 -103493602 + AT_rich Low_complexity Low_complexity 1 36 0 355 298 18 30 chr13 16251477 16251645 -103493253 - L1ME LINE L1 -376 5745 5580 22 0 0 0 chr13 16251694 16251716 -103493182 + AT_rich Low_complexity Low_complexity 1 22 0 244 342 0 0 chr13 16252600 16252720 -103492178 + T-rich Low_complexity Low_complexity 1 120 0 1963 96 92 0 chr13 16253680 16253952 -103490946 - AluSg SINE Alu -13 297 1 24 0 0 0 chr13 16254455 16254479 -103490419 + AT_rich Low_complexity Low_complexity 1 24 0 321 251 132 53 chr13 16254544 16254787 -103490111 + HAL1b LINE L1 340 601 -747 190 94 62 0 chr13 16254833 16254865 -103490033 - MER5A DNA MER1_type -148 41 8 629 247 136 49 chr13 16255188 16255557 -103489341 + L1MC4a LINE L1 6120 6520 -1288 231 308 100 8 chr13 16255613 16255733 -103489165 + L1MC4 LINE L1 6870 7000 -1042 1601 180 6 29 chr13 16255892 16256208 -103488690 + AluJo SINE Alu 1 309 -3 1108 237 58 13 chr13 16256842 16257154 -103487744 - MER63C DNA MER1_type -552 378 53 2037 134 10 3 chr13 16257507 16257646 -103487252 + AluSx SINE Alu 1 138 -174 2360 95 0 16 chr13 16257646 16257961 -103486937 + AluSq SINE Alu 1 310 -3 2037 134 10 3 chr13 16257961 16258120 -103486778 + AluSx SINE Alu 138 301 -11 849 228 0 6 chr13 16258120 16258300 -103486598 + AluJb SINE Alu 134 312 0 770 189 0 0 chr13 16258772 16258899 -103485999 + FLAM_A SINE Alu 1 127 -6 262 236 112 0 chr13 16258908 16258997 -103485901 - L1ME LINE L1 -518 5603 5505 461 184 146 0 chr13 16258997 16259100 -103485798 + MER58 DNA MER1_type 1 118 -223 723 239 52 14 chr13 16259102 16259315 -103485583 - MIR SINE MIR -11 251 31 1938 142 33 3 chr13 16259316 16259619 -103485279 - AluSx SINE Alu 0 312 1 845 220 163 72 chr13 16259675 16259833 -103485065 + LTR38 LTR ERV1 1 143 -413 2355 104 0 0 chr13 16259833 16260130 -103484768 + AluSg SINE Alu 1 297 -13 845 220 163 72 chr13 16260130 16260334 -103484564 + LTR38 LTR ERV1 143 396 -160 2007 78 0 0 chr13 16260342 16260586 -103484312 - AluSx SINE Alu -13 299 56 2318 76 14 3 chr13 16260820 16261109 -103483789 - AluSc SINE Alu -17 292 1 2476 68 0 0 chr13 16261327 16261622 -103483276 - AluY SINE Alu -16 295 1 477 49 0 0 chr13 16261817 16261878 -103483020 + AluY SINE Alu 1 61 -257 338 172 180 16 chr13 16261991 16262119 -103482779 + L1MC4 LINE L1 7877 8025 -17 366 265 10 29 chr13 16262317 16262419 -103482479 - L2 LINE L2 0 3313 3214 24 32 0 0 chr13 16262634 16262665 -103482233 + AT_rich Low_complexity Low_complexity 1 31 0 1724 160 27 7 chr13 16262665 16262958 -103481940 + AluJb SINE Alu 1 299 -13 2110 98 52 33 chr13 16263294 16263662 -103481236 - THE1C LTR MaLR 0 375 1 2246 71 3 30 chr13 16263906 16264202 -103480696 - AluSg SINE Alu -22 288 1 216 345 0 0 chr13 16264207 16264265 -103480633 - L2 LINE L2 -14 3258 3201 210 277 77 0 chr13 16264451 16264516 -103480382 + L2 LINE L2 3241 3310 -3 234 150 163 25 chr13 16266898 16266978 -103477920 + L1MC4 LINE L1 7002 7172 -716 231 213 33 16 chr13 16267252 16267313 -103477585 + L1MC4 LINE L1 7498 7559 -483 1745 168 0 3 chr13 16267503 16267794 -103477104 + AluJb SINE Alu 1 290 -22 1154 150 102 88 chr13 16267827 16268101 -103476797 + AluJb SINE Alu 2 279 -33 794 100 9 0 chr13 16268101 16268211 -103476687 - THE1C LTR MaLR -3 372 262 4077 64 0 15 chr13 16268211 16268730 -103476168 - MER9 LTR ERVK 0 511 1 8008 85 19 10 chr13 16268730 16270134 -103474764 - HERVK9 LTR ERVK 0 8032 4582 1855 48 13 0 chr13 16270133 16270361 -103474537 - HERVK9 LTR ERVK -1975 3941 3711 * 14094 56 1 0 chr13 16270361 16272034 -103472864 - HERVK9 LTR ERVK -3130 2786 1113 4393 79 2 7 chr13 16272035 16272606 -103472292 - HERVK9 LTR ERVK -5348 568 1 3883 88 0 6 chr13 16272606 16273120 -103471778 - MER9 LTR ERVK 0 511 1 1429 119 40 36 chr13 16273120 16273371 -103471527 - THE1C LTR MaLR -109 266 15 688 254 69 0 chr13 16273380 16273553 -103471345 + AluJo SINE Alu 98 282 -30 223 159 0 32 chr13 16273596 16273659 -103471239 + (TA)n Simple_repeat Simple_repeat 1 61 0 1773 160 50 0 chr13 16273759 16274040 -103470858 - AluJo SINE Alu -17 295 1 2251 151 81 2 chr13 16274245 16274642 -103470256 + MSTC LTR MaLR 1 428 0 1652 147 4 4 chr13 16274678 16274937 -103469961 + MER2 DNA MER2_type 7 265 -80 1887 202 129 28 chr13 16275099 16275174 -103469724 - REP3 LTR ERV 0 562 496 1780 130 68 17 chr13 16275174 16275467 -103469431 - AluSx SINE Alu -4 308 1 1887 202 129 28 chr13 16275467 16275901 -103468997 - REP3 LTR ERV -66 496 1 607 285 39 81 chr13 16275904 16276045 -103468853 - L1M4 LINE L1 -2678 3468 3323 1763 147 67 7 chr13 16276045 16276330 -103468568 - AluJo SINE Alu -10 302 1 607 285 39 81 chr13 16276330 16276410 -103468488 - L1M4 LINE L1 -2823 3323 3241 2165 115 10 3 chr13 16276410 16276715 -103468183 - AluSx SINE Alu -5 307 1 607 285 39 81 chr13 16276715 16276899 -103467999 - L1M4 LINE L1 -2905 3241 3079 1881 165 3 7 chr13 16277294 16277597 -103467301 - AluJb SINE Alu -10 302 1 361 273 9 0 chr13 16277857 16277967 -103466931 - HAL1 LINE L1 -700 1807 1697 296 197 0 61 chr13 16277972 16278038 -103466860 - MER20 DNA MER1_type -3 216 155 386 326 60 62 chr13 16278038 16278251 -103466647 - L2 LINE L2 -481 2833 2621 1589 189 0 29 chr13 16278251 16278557 -103466341 + AluJo SINE Alu 3 299 -13 2564 63 0 0 chr13 16278563 16278865 -103466033 - AluY SINE Alu -9 302 1 386 326 60 62 chr13 16278865 16279131 -103465767 - L2 LINE L2 -698 2616 2348 2311 106 0 3 chr13 16279131 16279434 -103465464 + AluSx SINE Alu 1 302 -10 427 253 71 22 chr13 16279475 16279657 -103465241 + L1MB2 LINE L1 -723 4294966763 -6839 1453 167 38 88 chr13 16279700 16280065 -103464833 - MER31B LTR ERV1 -119 347 1 2093 239 65 32 chr13 16280425 16281025 -103463873 + L1MB2 LINE L1 801 1638 -4675 2210 144 33 22 chr13 16281025 16281385 -103463513 - THE1B LTR MaLR 0 364 1 2093 239 65 32 chr13 16281385 16281551 -103463347 + L1MB2 LINE L1 1638 1797 -4516 43874 51 6 5 chr13 16281551 16287895 -103457003 + L1PA5 LINE L1 2 6291 0 4126 199 19 59 chr13 16287886 16287900 -103456998 + L1MB2 LINE L1 4638 4651 -1756 * 1851 126 25 14 chr13 16287900 16288216 -103456682 + AluSx SINE Alu 1 319 0 4126 199 19 59 chr13 16288216 16288799 -103456099 + L1MB2 LINE L1 4651 5256 -1151 2065 97 0 91 chr13 16288799 16289119 -103455779 + AluSx SINE Alu 1 291 -21 4126 199 19 59 chr13 16289119 16289150 -103455748 + L1MB2 LINE L1 5256 5287 -1120 2238 102 3 0 chr13 16289150 16289443 -103455455 + AluSp SINE Alu 1 294 -19 4126 199 19 59 chr13 16289443 16290117 -103454781 + L1MB2 LINE L1 5287 5987 -420 2101 103 24 14 chr13 16290117 16290427 -103454471 + AluSx SINE Alu 1 312 0 4126 199 19 59 chr13 16290427 16290792 -103454106 + L1MB2 LINE L1 5987 6204 -203 2254 88 14 0 chr13 16290792 16291086 -103453812 - AluSx SINE Alu -6 306 9 4126 199 19 59 chr13 16291086 16291283 -103453615 + L1MB2 LINE L1 6204 6407 0 329 278 121 31 chr13 16291329 16291552 -103453346 - L2 LINE L2 -1040 2274 2032 408 236 56 23 chr13 16291711 16291927 -103452971 + L1ME3A LINE L1 5845 6122 -48 1690 172 19 19 chr13 16291951 16292259 -103452639 + AluJo SINE Alu 3 310 -2 791 149 0 30 chr13 16292307 16292441 -103452457 + AluJo SINE Alu 4 133 -169 540 246 105 37 chr13 16292868 16293223 -103451675 - MLT1J LTR MaLR -30 481 58 1793 167 0 14 chr13 16293406 16293700 -103451198 - AluSx SINE Alu -22 290 1 1014 171 11 27 chr13 16294326 16294513 -103450385 + AluJo SINE Alu 120 303 -9 333 230 23 0 chr13 16294518 16294605 -103450293 + L1M4 LINE L1 5024 5112 -1034 2331 171 68 16 chr13 16294765 16295249 -103449649 - LTR22 LTR ERVK 0 509 1 278 205 51 39 chr13 16295631 16295709 -103449189 - MIR SINE MIR -64 144 66 2393 67 3 0 chr13 16296024 16296308 -103448590 + AluSp SINE Alu 1 285 -28 180 0 0 0 chr13 16296311 16296331 -103448567 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 2384 74 0 0 chr13 16297901 16298186 -103446712 + AluSx SINE Alu 1 285 -27 8519 49 1 0 chr13 16298259 16299224 -103445674 - LTR5 LTR ERVK -3 966 1 210 118 0 0 chr13 16299229 16299263 -103445635 + (T)n Simple_repeat Simple_repeat 1 34 0 2199 104 3 7 chr13 16299270 16299569 -103445329 + AluSq SINE Alu 1 298 -15 2379 98 0 0 chr13 16299918 16300225 -103444673 + AluSx SINE Alu 1 307 -5 865 186 14 0 chr13 16300227 16300372 -103444526 + AluJo/FRAM SINE Alu 140 286 -26 279 104 0 0 chr13 16300372 16300420 -103444478 + (CA)n Simple_repeat Simple_repeat 2 49 0 2277 113 3 3 chr13 16300512 16300822 -103444076 - AluSq SINE Alu -2 311 2 1986 117 0 66 chr13 16301191 16301296 -103443602 + AluJb SINE Alu 1 111 -201 4093 127 21 68 chr13 16301296 16302021 -103442877 - LTR8 LTR ERV1 0 691 1 1986 117 0 66 chr13 16302021 16302249 -103442649 + AluJb SINE Alu 111 312 0 2301 93 0 0 chr13 16302668 16302958 -103441940 - AluSg SINE Alu -18 292 3 1166 130 0 0 chr13 16303481 16303643 -103441255 + AluSg/x SINE Alu 137 298 -14 1856 122 7 19 chr13 16304110 16304381 -103440517 + AluSx SINE Alu 40 307 -5 5786 21 0 1 chr13 16304381 16305030 -103439868 + L1PA2 LINE L1 5507 6154 -1 1966 139 16 0 chr13 16305181 16305504 -103439394 - L1MA5 LINE L1 0 6300 5973 186 240 0 0 chr13 16305676 16305726 -103439172 + G-rich Low_complexity Low_complexity 3 52 0 21 36 0 0 chr13 16305755 16305783 -103439115 + AT_rich Low_complexity Low_complexity 1 28 0 1704 164 7 45 chr13 16305994 16306304 -103438594 - AluJo SINE Alu -14 298 1 947 227 91 43 chr13 16306327 16306651 -103438247 - MLT1L LTR MaLR -91 524 136 1356 251 40 6 chr13 16306651 16306978 -103437920 - MER58B DNA MER1_type -3 338 1 947 227 91 43 chr13 16306978 16307079 -103437819 - MLT1L LTR MaLR -479 136 41 265 326 80 64 chr13 16307298 16307485 -103437413 - L2 LINE L2 -12 3260 3071 645 284 125 50 chr13 16307653 16308156 -103436742 - LTR67 LTR ERVL -15 542 2 271 264 97 28 chr13 16308168 16308312 -103436586 - L2 LINE L2 -304 2968 2815 21 0 0 0 chr13 16308355 16308376 -103436522 + AT_rich Low_complexity Low_complexity 1 21 0 1736 154 26 4 chr13 16308396 16308668 -103436230 - AluJo SINE Alu -33 279 2 1651 173 0 67 chr13 16309321 16309651 -103435247 - AluJo SINE Alu -4 308 1 415 222 80 91 chr13 16310233 16310297 -103434601 + MIR SINE MIR 86 149 -113 2193 107 3 29 chr13 16310297 16310605 -103434293 + AluSg SINE Alu 1 300 -10 415 222 80 91 chr13 16310605 16310716 -103434182 + MIR SINE MIR 149 259 -3 590 105 0 12 chr13 16310854 16310940 -103433958 - FLAM_A SINE Alu -14 128 44 572 250 0 20 chr13 16310967 16311119 -103433779 - L2 LINE L2 -1 3312 3164 326 281 70 18 chr13 16311131 16311245 -103433653 + L2 LINE L2 3152 3271 -1 1411 179 8 23 chr13 16312799 16313061 -103431837 - AluJb SINE Alu -23 289 32 396 0 0 0 chr13 16313117 16313161 -103431737 + (CA)n Simple_repeat Simple_repeat 2 45 0 2146 143 0 0 chr13 16313821 16314128 -103430770 - AluSx SINE Alu -5 307 1 826 214 21 16 chr13 16314188 16314380 -103430518 - MIR SINE MIR -10 252 60 1899 91 47 14 chr13 16314673 16314975 -103429923 + AluY SINE Alu 1 311 0 1271 119 0 0 chr13 16314975 16315151 -103429747 + AluSg/x SINE Alu 125 300 -10 7461 118 19 16 chr13 16315312 16317379 -103427519 + L1MA1 LINE L1 4234 6302 0 955 228 122 108 chr13 16317441 16317976 -103426922 + MLT1H1 LTR MaLR 1 555 0 1700 132 19 16 chr13 16318449 16318706 -103426192 - AluJb SINE Alu -54 258 1 1351 215 21 30 chr13 16318717 16319047 -103425851 - L1ME1 LINE L1 -5 6161 5835 322 298 119 18 chr13 16319147 16319315 -103425583 + MER5A DNA MER1_type 1 185 -4 391 214 31 31 chr13 16319343 16319441 -103425457 + MIR SINE MIR 40 137 -125 486 278 38 48 chr13 16319452 16319661 -103425237 - L2 LINE L2 -1 3312 3106 625 154 34 26 chr13 16319944 16320061 -103424837 - MLT1J LTR MaLR -326 185 68 7915 35 6 3 chr13 16320430 16321861 -103423037 - L1PA4 LINE L1 -3 6152 4720 12548 31 1 0 chr13 16321861 16323335 -103421563 + L1PA4 LINE L1 3274 4749 -1397 2100 117 21 0 chr13 16323569 16323859 -103421039 + AluSx SINE Alu 1 296 -16 1695 162 179 17 chr13 16323912 16324331 -103420567 + LTR54B LTR ERV1 8 494 -4 2228 97 0 3 chr13 16324715 16325013 -103419885 - AluSx SINE Alu -15 297 1 2010 95 0 70 chr13 16325027 16325343 -103419555 - AluSx SINE Alu -18 294 1 2244 79 0 0 chr13 16325440 16325740 -103419158 - AluY SINE Alu 0 300 1 1242 219 150 27 chr13 16325936 16326302 -103418596 - MLT1G3 LTR MaLR -10 520 110 620 229 15 0 chr13 16326292 16326423 -103418475 - MER119 DNA MER1_type -277 306 174 * 787 183 100 19 chr13 16326433 16326674 -103418224 - MER2 DNA MER2_type 0 345 24 233 205 0 0 chr13 16326781 16326820 -103418078 - MER119 DNA MER1_type -538 45 7 * 993 291 160 11 chr13 16326809 16327246 -103417652 - MLT1G1 LTR MaLR -89 506 5 2190 96 0 32 chr13 16327404 16327717 -103417181 - AluY SINE Alu -8 303 1 370 279 39 8 chr13 16327733 16327862 -103417036 - L1MC5 LINE L1 -48 7913 7781 602 219 150 43 chr13 16327883 16328116 -103416782 - L1ME2 LINE L1 0 6164 5907 1086 153 34 0 chr13 16328118 16328295 -103416603 - AluSg/x SINE Alu -8 304 122 520 193 196 2 chr13 16328301 16328455 -103416443 - L1ME2 LINE L1 -273 5893 5712 2163 117 0 17 chr13 16328807 16329107 -103415791 - AluSx SINE Alu -17 295 1 1833 172 3 0 chr13 16329890 16330180 -103414718 + AluJo SINE Alu 1 291 -21 41 36 0 0 chr13 16331797 16331852 -103413046 + AT_rich Low_complexity Low_complexity 1 55 0 274 324 69 6 chr13 16332029 16332202 -103412696 + MIR SINE MIR 40 223 -39 2136 84 0 84 chr13 16332515 16332835 -103412063 - AluSg SINE Alu -17 293 1 2227 111 3 7 chr13 16332865 16333172 -103411726 - AluSq SINE Alu -7 306 1 21 0 0 0 chr13 16333339 16333360 -103411538 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 16333405 16333435 -103411463 + AT_rich Low_complexity Low_complexity 1 30 0 2788 16 0 0 chr13 16333933 16334237 -103410661 + AluY SINE Alu 1 304 -7 2055 100 0 91 chr13 16336256 16336422 -103408476 - AluSq SINE Alu -14 299 176 2244 91 3 7 chr13 16336422 16336731 -103408167 - AluSg1 SINE Alu -1 308 1 2055 100 0 91 chr13 16336731 16336893 -103408005 - AluSq SINE Alu -137 176 1 2331 58 29 23 chr13 16337159 16337492 -103407406 - AluY SINE Alu 0 335 1 25 0 0 0 chr13 16338021 16338046 -103406852 + GC_rich Low_complexity Low_complexity 1 25 0 2256 177 65 0 chr13 16341758 16342142 -103402756 - LTR57 LTR ERVL -2 409 1 215 228 0 35 chr13 16342324 16342381 -103402517 - L2 LINE L2 -93 3220 3166 1245 228 4 0 chr13 16342654 16342900 -103401998 + AluJo SINE Alu 39 285 -27 2471 84 10 0 chr13 16343329 16343638 -103401260 + AluSq SINE Alu 1 312 -1 238 314 0 35 chr13 16343987 16344073 -103400825 + L2 LINE L2 3231 3313 0 292 286 152 0 chr13 16344252 16344364 -103400534 + MIR SINE MIR 124 252 -10 188 273 0 0 chr13 16344368 16344412 -103400486 + MIR SINE MIR 219 262 0 413 285 63 39 chr13 16344791 16344998 -103399900 + L1ME4a LINE L1 5615 5826 -295 2343 74 0 0 chr13 16345017 16345348 -103399550 - AluY SINE Alu 0 331 1 2428 223 48 29 chr13 16345490 16346109 -103398789 - L1ME1 LINE L1 -5 6161 5531 276 250 125 11 chr13 16346207 16346295 -103398603 + MIR SINE MIR 149 246 -16 23 0 0 0 chr13 16346553 16346576 -103398322 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 16347742 16347766 -103397132 + AT_rich Low_complexity Low_complexity 1 24 0 2099 122 14 0 chr13 16347839 16348134 -103396764 - AluSx SINE Alu -13 299 1 298 261 80 0 chr13 16348278 16348366 -103396532 + MIR SINE MIR 47 141 -121 1013 165 23 6 chr13 16348481 16348657 -103396241 + AluSg/x SINE Alu 133 311 -1 434 208 15 85 chr13 16348742 16348872 -103396026 + MIR SINE MIR 87 207 -55 6128 130 37 26 chr13 16349271 16350309 -103394589 - L1PA15 LINE L1 -4 6161 5112 1977 125 10 10 chr13 16350309 16350605 -103394293 - AluSq SINE Alu -17 296 1 6128 130 37 26 chr13 16350605 16350793 -103394105 - L1PA15 LINE L1 -1053 5112 4928 28 29 0 0 chr13 16351461 16351496 -103393402 + AT_rich Low_complexity Low_complexity 1 35 0 533 278 211 30 chr13 16351670 16351696 -103393202 - L1MC4a LINE L1 -1897 5911 5891 219 114 0 0 chr13 16351696 16351731 -103393167 + (TA)n Simple_repeat Simple_repeat 2 36 0 533 278 211 30 chr13 16351731 16352074 -103392824 - L1MC4a LINE L1 -1917 5891 5475 872 154 7 7 chr13 16352123 16352266 -103392632 - AluJo SINE Alu -169 143 1 471 230 40 43 chr13 16352309 16352647 -103392251 - HAL1 LINE L1 -1011 1496 1059 2376 112 0 0 chr13 16352652 16352964 -103391934 + AluSq SINE Alu 1 312 -1 335 114 0 0 chr13 16353035 16353079 -103391819 - Alu SINE Alu -257 44 1 367 310 33 26 chr13 16353103 16353223 -103391675 - MLT1J1 LTR MaLR -284 188 78 1580 161 3 71 chr13 16353223 16353546 -103391352 - AluJo SINE Alu -11 301 1 367 310 33 26 chr13 16353546 16353623 -103391275 - MLT1J1 LTR MaLR -394 78 3 1204 321 110 32 chr13 16353628 16354438 -103390460 - HAL1 LINE L1 -1618 889 17 462 65 0 0 chr13 16354462 16354524 -103390374 + (TG)n Simple_repeat Simple_repeat 2 63 0 1505 211 3 23 chr13 16354529 16354828 -103390070 - AluJo SINE Alu -19 293 1 183 42 0 0 chr13 16355016 16355040 -103389858 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 627 213 38 27 chr13 16355095 16355359 -103389539 - L1MDa LINE L1 -3890 2650 2444 2063 146 7 0 chr13 16355359 16355661 -103389237 - AluJb SINE Alu -8 304 1 627 213 38 27 chr13 16355661 16355760 -103389138 - L1MDa LINE L1 -4096 2444 2348 1989 114 14 7 chr13 16355786 16356083 -103388815 + AluSq SINE Alu 1 299 -14 2126 117 19 10 chr13 16356089 16356396 -103388502 + AluSx SINE Alu 1 310 -2 1680 154 57 0 chr13 16356450 16356729 -103388169 - AluJo SINE Alu -17 295 1 353 166 47 24 chr13 16357047 16357132 -103387766 + MLT1E LTR MaLR 420 491 -102 820 183 21 0 chr13 16357135 16357277 -103387621 + FRAM SINE Alu 11 155 -21 522 290 100 29 chr13 16357291 16357601 -103387297 + L1ME3A LINE L1 3307 3638 -2508 843 258 34 34 chr13 16357706 16358001 -103386897 + L1ME3A LINE L1 3866 4160 -1986 1457 230 100 56 chr13 16358050 16358550 -103386348 + MLT1E LTR MaLR 70 591 -2 900 218 118 82 chr13 16358552 16358837 -103386061 + L1ME3A LINE L1 4181 4455 -1691 1990 143 0 10 chr13 16358837 16359161 -103385737 + AluSx SINE Alu 1 321 0 900 218 118 82 chr13 16359161 16359277 -103385621 + L1ME3A LINE L1 4455 4565 -1581 2040 146 3 0 chr13 16359277 16359579 -103385319 - AluSq SINE Alu -10 303 1 900 218 118 82 chr13 16359579 16359803 -103385095 + L1ME3A LINE L1 4565 4832 -1314 1918 100 123 9 chr13 16359841 16359852 -103385046 + MSTC LTR MaLR 1 9 -419 2669 98 17 3 chr13 16359852 16360211 -103384687 - THE1B LTR MaLR 0 364 1 1918 100 123 9 chr13 16360211 16360539 -103384359 + MSTC LTR MaLR 9 379 -49 443 226 111 65 chr13 16360539 16360625 -103384273 + L1ME3A LINE L1 4960 5041 -1105 2178 104 44 3 chr13 16360625 16360922 -103383976 + AluSx SINE Alu 1 309 -3 2441 71 0 0 chr13 16360922 16361219 -103383679 + AluY SINE Alu 1 297 -14 443 226 111 65 chr13 16361219 16361437 -103383461 + L1ME3A LINE L1 5040 5279 -867 2243 120 0 7 chr13 16361537 16361846 -103383052 + AluSx SINE Alu 1 307 -5 261 0 0 0 chr13 16361857 16361886 -103383012 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 2364 90 3 3 chr13 16361908 16362208 -103382690 + AluSq SINE Alu 1 300 -13 555 226 165 28 chr13 16362209 16362457 -103382441 + L1P5 LINE L1 5292 5573 -583 306 243 37 7 chr13 16362458 16362594 -103382304 + (TA)n Simple_repeat Simple_repeat 1 140 0 567 275 26 0 chr13 16362711 16362900 -103381998 + L1ME3A LINE L1 5746 5939 -231 248 200 27 45 chr13 16363071 16363181 -103381717 + (TTATA)n Simple_repeat Simple_repeat 3 110 0 2087 119 3 14 chr13 16363506 16363830 -103381068 + AluSx SINE Alu 1 321 0 2128 124 3 3 chr13 16364210 16364517 -103380381 - AluSx SINE Alu -4 308 2 1858 157 67 6 chr13 16365072 16365417 -103379481 + MER47A DNA MER2_type 1 366 0 196 181 96 72 chr13 16365731 16365814 -103379084 + MIR SINE MIR 117 201 -61 269 250 42 0 chr13 16366383 16366455 -103378443 - L2 LINE L2 0 3272 3198 233 284 17 69 chr13 16366595 16366711 -103378187 + L2 LINE L2 3203 3312 -1 1171 149 78 136 chr13 16366812 16367209 -103377689 - MLT1A2 LTR MaLR 0 374 1 2347 104 0 0 chr13 16367496 16367794 -103377104 - AluSx SINE Alu -14 298 1 2589 140 33 13 chr13 16368149 16368607 -103376291 + L1MB4 LINE L1 5714 6180 0 1773 137 74 0 chr13 16368614 16368885 -103376013 + AluJo SINE Alu 1 291 -21 905 111 0 0 chr13 16370012 16370129 -103374769 + AluSq/x SINE Alu 1 117 -195 2116 116 7 7 chr13 16370307 16370601 -103374297 - AluSx SINE Alu -18 294 1 234 0 0 0 chr13 16370911 16370937 -103373961 + (CCA)n Simple_repeat Simple_repeat 1 26 0 830 139 16 0 chr13 16370993 16371122 -103373776 - AluJb SINE Alu -181 131 1 488 208 47 0 chr13 16371123 16371252 -103373646 + L1M4 LINE L1 4054 4188 -1958 1622 142 67 8 chr13 16371275 16371542 -103373356 + AluSq SINE Alu 3 285 -28 189 0 0 0 chr13 16371551 16371572 -103373326 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 999 168 12 6 chr13 16371572 16371739 -103373159 + FRAM SINE Alu 2 169 -7 23 33 0 0 chr13 16371877 16371907 -103372991 + AT_rich Low_complexity Low_complexity 1 30 0 2132 114 0 7 chr13 16371916 16372213 -103372685 + AluSx SINE Alu 1 295 -17 1996 82 0 0 chr13 16372447 16372691 -103372207 + AluSx SINE Alu 56 299 -13 2015 113 0 3 chr13 16373523 16373805 -103371093 + AluSx SINE Alu 1 281 -31 518 83 0 0 chr13 16373879 16373951 -103370947 - LTR5 LTR ERVK 0 969 898 1871 157 10 0 chr13 16374662 16374955 -103369943 - AluSx SINE Alu -16 296 1 189 0 0 0 chr13 16376533 16376554 -103368344 + (TGGA)n Simple_repeat Simple_repeat 1 21 0 2301 93 0 0 chr13 16377980 16378270 -103366628 + AluSg SINE Alu 3 292 -18 901 157 6 35 chr13 16378687 16378859 -103366039 - AluJb SINE Alu 0 312 146 26 30 0 0 chr13 16378867 16378900 -103365998 + AT_rich Low_complexity Low_complexity 1 33 0 1734 140 74 0 chr13 16379635 16379906 -103364992 - AluJo SINE Alu -21 291 1 1308 155 52 16 chr13 16379913 16380165 -103364733 - L1MB4 LINE L1 0 6180 5920 2287 307 42 22 chr13 16380265 16381562 -103363336 - L1M2c LINE L1 -5294 1495 752 26 30 0 0 chr13 16382731 16382764 -103362134 + AT_rich Low_complexity Low_complexity 1 33 0 1482 158 8 15 chr13 16382886 16383145 -103361753 + L1PA15 LINE L1 5905 6161 -4 394 244 0 76 chr13 16383544 16383675 -103361223 - MIR SINE MIR -55 207 87 654 223 25 69 chr13 16383746 16383948 -103360950 - AluSg/x SINE Alu 0 312 120 396 0 0 0 chr13 16384466 16384510 -103360388 + (TG)n Simple_repeat Simple_repeat 2 45 0 1342 191 8 23 chr13 16384566 16384828 -103360070 + AluJb SINE Alu 32 289 -23 7360 29 2 4 chr13 16385360 16386362 -103358536 + L1PA2 LINE L1 5111 6113 -42 188 111 28 0 chr13 16386623 16386659 -103358239 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1540 212 0 3 chr13 16387576 16387882 -103357016 + AluSq SINE Alu 1 305 -8 11810 75 3 3 chr13 16388038 16389629 -103355269 + L1P LINE L1 3813 5403 -743 1836 110 92 4 chr13 16392119 16392392 -103352506 + AluSg SINE Alu 1 297 -13 10596 37 1 0 chr13 16392938 16394220 -103350678 + L1P LINE L1 2827 4109 -2037 2153 120 0 17 chr13 16394521 16394821 -103350077 - AluSx SINE Alu -17 295 1 1847 172 3 0 chr13 16395608 16395898 -103349000 + AluJo SINE Alu 1 291 -21 12508 85 74 5 chr13 16396333 16398125 -103346773 + L1P LINE L1 1 1916 -4230 4937 213 43 13 chr13 16398249 16400040 -103344858 + L1M2 LINE L1 1617 3457 -3391 5283 42 7 2 chr13 16400140 16401239 -103343659 - L1P2 LINE L1 -336 5819 4720 * 10281 75 6 4 chr13 16401234 16402637 -103342261 + L1P LINE L1 3269 4673 -1473 824 158 32 50 chr13 16404119 16404340 -103340558 + L1MA5A LINE L1 6075 6291 -6 1439 194 44 11 chr13 16404347 16404667 -103340231 + L1ME LINE L1 5269 5599 -567 1555 264 60 9 chr13 16404673 16405108 -103339790 + L1MCa LINE L1 22 478 -5948 359 192 20 50 chr13 16405125 16405224 -103339674 + L1MCa LINE L1 443 538 -5888 4063 118 5 0 chr13 16405462 16406054 -103338844 + Tigger1 DNA MER2_type 588 1182 -1236 5816 238 34 28 chr13 16406055 16407578 -103337320 + L1 LINE L1 14 1380 -5409 318 26 0 0 chr13 16408972 16409011 -103335887 + (CA)n Simple_repeat Simple_repeat 1 39 0 2228 119 0 0 chr13 16410728 16411022 -103333876 + AluSg SINE Alu 1 294 -16 643 229 68 71 chr13 16411524 16411847 -103333051 - L1MC4 LINE L1 -678 7364 7043 504 283 82 80 chr13 16412190 16412728 -103332170 - L1MEd LINE L1 -4900 1219 681 365 167 12 48 chr13 16412792 16412876 -103332022 - MER94 DNA DNA -48 86 6 422 226 13 69 chr13 16413006 16413165 -103331733 - MER57A LTR ERV1 -4 399 250 2587 198 41 68 chr13 16413289 16413669 -103331229 + L1 LINE L1 3314 3703 -3085 2128 79 7 7 chr13 16413669 16413944 -103330954 + L1PA5 LINE L1 5860 6150 -4 2587 198 41 68 chr13 16413944 16414466 -103330432 + L1 LINE L1 3703 4192 -2596 2170 158 10 5 chr13 16414472 16414859 -103330039 + Tigger1 DNA MER2_type 2029 2417 -1 199 167 30 0 chr13 16414864 16414930 -103329968 + (TA)n Simple_repeat Simple_repeat 1 68 0 1041 159 36 36 chr13 16415739 16415934 -103328964 - AluJb SINE Alu -117 195 1 380 193 202 0 chr13 16415934 16416048 -103328850 - L1MB8 LINE L1 -269 5909 5773 1907 104 57 13 chr13 16416059 16416375 -103328523 - L1MA4A LINE L1 0 6303 5974 986 94 8 0 chr13 16416376 16416503 -103328395 - AluSq/x SINE Alu -184 128 1 5459 102 28 15 chr13 16416796 16418295 -103326603 - L1PA15 LINE L1 -8 6157 4675 308 309 115 36 chr13 16418296 16418548 -103326350 + L2 LINE L2 2487 2758 -556 310 400 24 28 chr13 16418591 16418846 -103326052 + L2 LINE L2 2839 3092 -180 563 315 90 21 chr13 16418855 16419233 -103325665 - L1MEd LINE L1 -5262 1372 969 407 187 58 79 chr13 16419449 16419588 -103325310 - L1MEd LINE L1 -5924 618 483 2280 108 16 0 chr13 16419756 16420062 -103324836 + AluSx SINE Alu 1 311 -1 1499 261 72 19 chr13 16420074 16420591 -103324307 + L1M4 LINE L1 2 545 -5997 2354 105 0 13 chr13 16420601 16420916 -103323982 + AluY SINE Alu 1 311 0 2220 197 21 0 chr13 16420953 16421389 -103323509 - MER44D DNA MER2_type -61 544 228 679 221 11 103 chr13 16421392 16421654 -103323244 + L1M4 LINE L1 1866 2103 -4543 418 283 18 27 chr13 16421685 16421904 -103322994 + L1M4 LINE L1 2287 2503 -4143 801 287 89 43 chr13 16421932 16422538 -103322360 + L1M4 LINE L1 2616 3249 -3395 3045 193 34 5 chr13 16422657 16423444 -103321454 + L1M4 LINE L1 2462 3271 -2875 1513 222 90 28 chr13 16423526 16423668 -103321230 + L1M4 LINE L1 4009 4141 -2005 180 0 0 0 chr13 16423668 16423688 -103321210 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1513 222 90 28 chr13 16423688 16424089 -103320809 + L1M4 LINE L1 4141 4586 -1560 21815 48 45 3 chr13 16424197 16427149 -103317749 - L1P LINE L1 -3070 3076 1 2113 112 3 0 chr13 16427770 16428095 -103316803 + AluSg SINE Alu 1 326 0 203 185 0 19 chr13 16428258 16428312 -103316586 + (CATA)n Simple_repeat Simple_repeat 2 54 0 460 219 0 0 chr13 16429230 16429312 -103315586 + AluS SINE Alu 1 82 -230 3950 239 26 28 chr13 16479313 16480510 -103264388 - L1P LINE L1 -2604 3542 2348 2099 140 0 0 chr13 16480512 16480804 -103264094 + AluSg SINE Alu 1 292 -18 183 264 0 56 chr13 16483450 16483522 -103261376 + L2 LINE L2 2154 2221 -1093 2148 132 0 0 chr13 16484143 16484438 -103260460 - AluSx SINE Alu -17 295 1 1753 201 36 0 chr13 16485876 16486205 -103258693 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chr13 16486877 16486898 -103258000 + AT_rich Low_complexity Low_complexity 1 21 0 3704 129 5 52 chr13 16486926 16487547 -103257351 - LTR14B LTR ERVK 0 608 17 377 297 121 18 chr13 16487642 16487807 -103257091 - MER5A DNA MER1_type 0 189 8 242 329 0 12 chr13 16487842 16487924 -103256974 - MER5A DNA MER1_type -31 158 78 2281 174 48 30 chr13 16488067 16488567 -103256331 - LTR22 LTR ERVK 0 509 1 1639 187 0 14 chr13 16488700 16488989 -103255909 + AluJo SINE Alu 1 285 -27 2128 138 0 3 chr13 16489000 16489311 -103255587 + AluSq SINE Alu 1 310 -3 420 285 65 40 chr13 16490513 16490713 -103254185 + MIR SINE MIR 48 252 -10 852 161 112 0 chr13 16491041 16491184 -103253714 - AluSc SINE Alu -16 293 135 391 244 109 0 chr13 16491251 16491370 -103253528 - Charlie7 DNA MER1_type -266 2346 2215 1096 107 0 0 chr13 16491527 16491667 -103253231 + AluSx SINE Alu 61 200 -112 602 121 0 78 chr13 16491710 16491790 -103253108 + AluSx SINE Alu 201 271 -39 428 0 0 19 chr13 16491790 16491843 -103253055 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 602 121 0 78 chr13 16491843 16491878 -103253020 + AluSx SINE Alu 271 307 -3 1745 156 43 7 chr13 16491969 16492251 -103252647 - AluJo SINE Alu -19 293 2 575 163 7 118 chr13 16492275 16492410 -103252488 - AluJb SINE Alu -187 125 6 1578 85 5 5 chr13 16492488 16492688 -103252210 + AluY SINE Alu 95 294 -17 383 234 64 26 chr13 16492692 16493002 -103251896 - L1MC5 LINE L1 -302 7659 7304 2011 153 0 0 chr13 16493203 16493503 -103251395 + AluJb SINE Alu 1 300 -12 375 192 0 0 chr13 16493692 16493770 -103251128 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 304 272 0 22 chr13 16493772 16493864 -103251034 + L1MC4 LINE L1 6614 6703 -1339 602 178 11 33 chr13 16493866 16494046 -103250852 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 674 231 17 103 chr13 16494054 16494575 -103250323 + MER115 DNA AcHobo 71 4031 0 802 216 25 6 chr13 16495582 16495744 -103249154 - FRAM SINE Alu -14 162 1 21 0 0 0 chr13 16496138 16496159 -103248739 + AT_rich Low_complexity Low_complexity 1 21 0 504 279 62 12 chr13 16496445 16496685 -103248213 + L2 LINE L2 2033 2284 -1030 1717 143 34 4 chr13 16496711 16496976 -103247922 - AluJb SINE Alu -39 273 1 1147 272 45 32 chr13 16496976 16497685 -103247213 - L1ME LINE L1 -4823 1257 536 803 323 30 55 chr13 16497829 16498361 -103246537 - L1ME LINE L1 -5539 531 13 1817 166 0 3 chr13 16498572 16498877 -103246021 + AluJb SINE Alu 1 304 0 429 219 57 19 chr13 16499002 16499107 -103245791 + MLT1J2 LTR MaLR 3 111 -339 443 274 74 57 chr13 16499169 16499344 -103245554 + MLT1J2 LTR MaLR 238 415 -31 638 211 102 0 chr13 16499730 16499877 -103245021 + L1PA16 LINE L1 5999 6160 -6 1202 162 18 0 chr13 16500123 16500345 -103244553 - L1MA4 LINE L1 0 6300 6075 1057 214 7 65 chr13 16500416 16500724 -103244174 - L1MA10 LINE L1 -13 6321 6032 406 255 0 0 chr13 16501092 16501186 -103243712 - MIR SINE MIR -110 152 59 488 239 92 0 chr13 16501279 16501409 -103243489 - MIR SINE MIR -65 197 56 2524 44 0 0 chr13 16502855 16503149 -103241749 + AluY SINE Alu 1 294 -17 1786 177 3 3 chr13 16503573 16503878 -103241020 + AluJb SINE Alu 2 306 -6 233 279 0 15 chr13 16503888 16503956 -103240942 - MIR3 SINE MIR -32 176 110 304 182 76 0 chr13 16504022 16504088 -103240810 - MIR SINE MIR -60 148 78 1761 174 0 17 chr13 16504222 16504515 -103240383 - AluJo SINE Alu -9 303 16 464 291 55 21 chr13 16505070 16505611 -103239287 + L1MC/D LINE L1 4928 5481 -750 849 163 27 0 chr13 16505634 16505781 -103239117 + FAM SINE Alu 1 42 -7 998 111 0 7 chr13 16505829 16505964 -103238934 - AluSq/x SINE Alu -179 134 1 1800 123 93 13 chr13 16506075 16506385 -103238513 - MER1B DNA MER1_type -2 335 1 1118 131 0 0 chr13 16507134 16507294 -103237604 + FRAM SINE Alu 2 161 -15 523 187 81 8 chr13 16507494 16507617 -103237281 - L1MB4 LINE L1 -1 6179 6048 2382 91 0 19 chr13 16507884 16508202 -103236696 + AluSx SINE Alu 1 312 0 310 279 158 6 chr13 16508363 16508521 -103236377 - MIR SINE MIR -79 183 2 248 200 36 91 chr13 16508537 16508647 -103236251 - L1MB4 LINE L1 -2330 5478 5375 1680 148 7 7 chr13 16508670 16508940 -103235958 - AluJb SINE Alu -40 272 3 770 171 0 8 chr13 16508948 16509071 -103235827 - FLAM_C SINE Alu -17 126 5 22 35 0 0 chr13 16510117 16510146 -103234752 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr13 16510322 16510367 -103234531 + AT_rich Low_complexity Low_complexity 1 45 0 261 241 93 28 chr13 16511248 16511356 -103233542 - L2 LINE L2 -1 3271 3157 893 224 91 5 chr13 16511601 16511811 -103233087 - L1ME1 LINE L1 -11 6155 5928 210 91 0 0 chr13 16512141 16512174 -103232724 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 842 144 16 171 chr13 16512474 16512779 -103232119 + LTR49 LTR ERV1 12 269 -326 398 188 25 19 chr13 16512887 16513003 -103231895 + LTR49 LTR ERV1 246 485 -254 352 203 174 80 chr13 16513026 16513164 -103231734 + LTR48 LTR ERV1 607 757 -30 2326 216 115 36 chr13 16513241 16513903 -103230995 + MER21B LTR ERV1 98 811 -52 26 82 0 0 chr13 16515186 16515247 -103229651 + GC_rich Low_complexity Low_complexity 1 61 0 1302 80 150 0 chr13 16515657 16515857 -103229041 + MER30 DNA MER1_type 1 230 0 2160 121 0 10 chr13 16516607 16516930 -103227968 - AluSx SINE Alu 0 320 1 860 159 7 0 chr13 16517042 16517180 -103227718 + L1M4 LINE L1 5342 5480 -694 1574 180 32 0 chr13 16517189 16517467 -103227431 + AluJb SINE Alu 1 287 -25 294 273 9 59 chr13 16517521 16517682 -103227216 + FRAM SINE Alu 8 135 -31 2364 108 0 0 chr13 16518640 16518945 -103225953 - AluSq SINE Alu -8 305 1 2355 109 0 0 chr13 16519872 16520175 -103224723 - AluSx SINE Alu -9 303 1 496 272 63 24 chr13 16522414 16522620 -103222278 - MIR SINE MIR -48 214 1 207 281 0 18 chr13 16522614 16522671 -103222227 + MIR SINE MIR 2 57 -205 * 195 252 118 39 chr13 16523119 16523246 -103221652 + L2 LINE L2 1429 1565 -1749 1643 125 27 116 chr13 16523375 16523710 -103221188 - AluJb SINE Alu -7 305 1 196 241 0 0 chr13 16523801 16523855 -103221043 + MIR SINE MIR 204 257 -5 732 261 336 8 chr13 16523999 16524784 -103220114 + L2 LINE L2 1587 2629 -685 764 258 104 13 chr13 16524856 16525174 -103219724 + LTR16A LTR ERVL 104 450 0 1116 280 54 19 chr13 16525198 16525812 -103219086 + L2 LINE L2 2668 3313 0 1753 180 0 10 chr13 16526228 16526522 -103218376 - AluJb SINE Alu -21 291 1 809 136 0 23 chr13 16526558 16526690 -103218208 - FLAM_A SINE Alu 0 142 14 1597 179 17 10 chr13 16527595 16527741 -103217157 + AluJo SINE Alu 1 144 -168 2438 74 0 3 chr13 16527741 16528040 -103216858 + AluY SINE Alu 1 298 -13 1597 179 17 10 chr13 16528040 16528184 -103216714 + AluJo SINE Alu 144 293 -19 216 0 0 0 chr13 16528184 16528208 -103216690 + (TA)n Simple_repeat Simple_repeat 2 25 0 2108 135 10 3 chr13 16529163 16529460 -103215438 - AluJo SINE Alu -13 299 1 565 15 0 0 chr13 16529901 16529969 -103214929 - L1PA6 LINE L1 -1 6153 6086 279 36 15 0 chr13 16529969 16530009 -103214889 + L1PA5 LINE L1 5929 5972 -182 2428 53 3 7 chr13 16530027 16530331 -103214567 - AluY SINE Alu -8 303 1 2460 77 0 0 chr13 16530333 16530644 -103214254 - AluY SINE Alu 0 311 1 189 0 0 0 chr13 16531262 16531283 -103213615 + (TG)n Simple_repeat Simple_repeat 2 22 0 1573 164 6 61 chr13 16531283 16531456 -103213442 - AluJo SINE Alu -26 286 133 2375 72 0 3 chr13 16531456 16531748 -103213150 + AluY SINE Alu 1 291 -20 1573 164 6 61 chr13 16531748 16531875 -103213023 - AluJo SINE Alu -179 133 1 10039 119 18 3 chr13 16531961 16533418 -103211480 + Tigger1 DNA MER2_type 1 1478 -940 2363 107 3 0 chr13 16533419 16533728 -103211170 + AluSq SINE Alu 1 310 -3 632 188 58 36 chr13 16533746 16533884 -103211014 + FRAM SINE Alu 20 160 -16 6096 125 21 2 chr13 16533884 16534814 -103210084 + Tigger1 DNA MER2_type 1471 2418 0 376 325 47 0 chr13 16534834 16535003 -103209895 - L1ME3A LINE L1 -288 5882 5706 1433 234 6 6 chr13 16535019 16535331 -103209567 - AluJo SINE Alu 0 312 1 1039 118 0 0 chr13 16535331 16535466 -103209432 - AluSq/x SINE Alu -177 135 1 339 249 0 4 chr13 16535473 16535578 -103209320 - L1ME3A LINE L1 -803 5361 5259 273 280 43 11 chr13 16535591 16535684 -103209214 + MIR SINE MIR 47 142 -120 1744 158 0 21 chr13 16535733 16536012 -103208886 - AluJo SINE Alu -39 273 1 2447 77 0 0 chr13 16536454 16536752 -103208146 - AluY SINE Alu -13 298 1 237 263 60 30 chr13 16536880 16537013 -103207885 - L1ME3A LINE L1 -1082 5064 4928 296 273 10 10 chr13 16537188 16537287 -103207611 - L1ME3A LINE L1 -1499 4647 4549 699 186 0 0 chr13 16537704 16537822 -103207076 - FLAM_C SINE Alu -15 118 1 389 281 29 41 chr13 16538202 16538444 -103206454 + L1ME4a LINE L1 5714 5952 -169 269 111 0 0 chr13 16538453 16538498 -103206400 + FLAM_A SINE Alu 89 133 0 1948 131 0 39 chr13 16538513 16538819 -103206079 + AluSx SINE Alu 1 294 -18 2422 72 0 0 chr13 16538823 16539116 -103205782 + AluY SINE Alu 2 294 -17 2419 77 3 0 chr13 16539123 16539422 -103205476 + AluSc SINE Alu 1 300 -9 233 163 0 0 chr13 16539474 16539517 -103205381 - L2 LINE L2 -248 3065 3023 476 279 114 0 chr13 16539827 16539967 -103204931 - MER63 DNA MER1_type -276 786 5 435 155 70 120 chr13 16540010 16540152 -103204746 + L1ME4a LINE L1 5985 6119 -2 2118 132 0 0 chr13 16540521 16540808 -103204090 - AluSx SINE Alu -25 287 1 3151 165 79 27 chr13 16540814 16541470 -103203428 - L1MB5 LINE L1 0 6174 5485 2247 117 0 0 chr13 16542764 16543064 -103201834 + AluSg SINE Alu 1 300 -10 206 286 62 27 chr13 16543345 16543457 -103201441 + L2 LINE L2 3150 3265 -7 2007 162 24 26 chr13 16543649 16544032 -103200866 + MLT1B LTR MaLR 1 382 -8 23 0 0 0 chr13 16544322 16544345 -103200553 + AT_rich Low_complexity Low_complexity 1 23 0 310 193 59 82 chr13 16544467 16544602 -103200296 - L1ME4a LINE L1 -48 6073 5942 561 160 0 114 chr13 16544734 16544865 -103200033 - FLAM_A SINE Alu -13 120 5 24 53 0 0 chr13 16545099 16545137 -103199761 + AT_rich Low_complexity Low_complexity 1 38 0 868 128 45 0 chr13 16545175 16545308 -103199590 + FLAM_C SINE Alu 3 141 -2 181 300 29 29 chr13 16545867 16545937 -103198961 + MIR3 SINE MIR 87 156 -52 23 0 0 0 chr13 16546193 16546216 -103198682 + AT_rich Low_complexity Low_complexity 1 23 0 190 207 244 0 chr13 16547387 16547469 -103197429 - MIR SINE MIR -71 137 36 297 0 0 0 chr13 16548404 16548437 -103196461 + (TG)n Simple_repeat Simple_repeat 1 33 0 229 252 83 9 chr13 16549093 16549206 -103195692 + MIR SINE MIR 45 170 -66 3712 57 4 13 chr13 16551614 16552091 -103192807 - L1PA7 LINE L1 0 6154 5682 368 293 135 40 chr13 16552812 16553160 -103191738 + L1ME4a LINE L1 5504 5884 -237 657 203 27 20 chr13 16553964 16554112 -103190786 - L1PA16 LINE L1 0 6166 6018 3799 166 13 21 chr13 16554343 16555106 -103189792 - L1MA3 LINE L1 0 6305 5549 24 32 0 0 chr13 16555983 16556014 -103188884 + AT_rich Low_complexity Low_complexity 1 31 0 739 171 0 0 chr13 16556814 16556931 -103187967 + FLAM_A SINE Alu 1 117 -16 354 339 18 0 chr13 16558541 16558653 -103186245 - L2 LINE L2 -259 3054 2941 184 167 48 24 chr13 16560438 16560480 -103184418 + MER5A DNA MER1_type 43 85 -104 * 351 189 156 11 chr13 16560464 16560554 -103184344 - MER5A DNA MER1_type -77 112 10 327 25 0 0 chr13 16562736 16562776 -103182122 + (TG)n Simple_repeat Simple_repeat 1 40 0 463 188 21 0 chr13 16563273 16563369 -103181529 - Charlie1 DNA MER1_type -45 2716 2619 1098 206 5 0 chr13 16564841 16565050 -103179848 + AluJb SINE Alu 97 306 -6 2044 121 0 0 chr13 16565389 16565662 -103179236 + AluSx SINE Alu 1 273 -39 490 181 0 0 chr13 16565664 16565747 -103179151 + AluJb SINE Alu 206 288 -24 949 189 0 0 chr13 16565800 16565964 -103178934 + FRAM SINE Alu 8 171 -5 3649 162 32 0 chr13 16565983 16566644 -103178254 + L1MB3 LINE L1 5472 6153 -30 579 190 50 25 chr13 16568091 16568212 -103176686 - AluJb SINE Alu -15 297 174 1098 206 5 0 chr13 16568388 16568597 -103176301 + AluJb SINE Alu 97 306 -6 2244 124 0 0 chr13 16568936 16569243 -103175655 + AluSx SINE Alu 1 307 -5 24 32 0 0 chr13 16569825 16569856 -103175042 + AT_rich Low_complexity Low_complexity 1 31 0 1231 108 5 5 chr13 16570643 16570838 -103174060 - L1MA1 LINE L1 0 6302 6108 25 31 0 0 chr13 16571032 16571064 -103173834 + AT_rich Low_complexity Low_complexity 1 32 0 9563 219 30 20 chr13 16571073 16573781 -103171117 - L1 LINE L1 -1438 5410 2675 763 158 0 0 chr13 16573819 16573933 -103170965 - AluJo SINE Alu -21 291 178 1999 177 92 0 chr13 16573933 16574323 -103170575 + MSTB LTR MaLR 1 426 0 8418 196 18 11 chr13 16574390 16576009 -103168889 + MSTB-int LTR MaLR 22 1651 0 2081 202 52 2 chr13 16576009 16576410 -103168488 + MSTB LTR MaLR 1 421 -5 789 226 11 32 chr13 16576410 16576600 -103168298 - AluJo SINE Alu -126 186 1 1462 235 35 19 chr13 16576601 16577023 -103167875 - L1 LINE L1 -4180 2669 2241 282 73 0 0 chr13 16577027 16577068 -103167830 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 402 21 0 0 chr13 16577067 16577114 -103167784 + (TA)n Simple_repeat Simple_repeat 2 48 0 298 248 142 49 chr13 16577955 16578140 -103166758 + L1ME LINE L1 5387 5588 -533 2504 273 114 40 chr13 16578671 16580110 -103164788 + L2 LINE L2 1778 3313 0 7062 23 0 1 chr13 16581297 16582119 -103162779 + L1PA4 LINE L1 5332 6152 -3 341 279 279 27 chr13 16582410 16582704 -103162194 - L2 LINE L2 -1308 2006 1639 662 269 34 19 chr13 16583499 16583707 -103161191 + MIR SINE MIR 6 216 -46 2246 98 7 0 chr13 16584050 16584346 -103160552 + AluSg SINE Alu 1 298 -12 3162 250 26 9 chr13 16584737 16585938 -103158960 + L1PA16 LINE L1 1330 2574 -4223 8472 247 39 20 chr13 16585943 16588367 -103156531 + L1PA16 LINE L1 2787 5263 -1534 1819 162 17 3 chr13 16588367 16588663 -103156235 - AluJb SINE Alu -12 300 1 8472 247 39 20 chr13 16588663 16588790 -103156108 + L1PA16 LINE L1 5263 5386 -1411 2519 184 20 2 chr13 16588790 16589280 -103155618 + L1PA16 LINE L1 6313 6811 -6 281 360 64 41 chr13 16589805 16589977 -103154921 + L2 LINE L2 2564 2739 -575 604 250 0 0 chr13 16590122 16590266 -103154632 - L1MA10 LINE L1 -11 6323 6180 1036 177 24 141 chr13 16590284 16590576 -103154322 - L1ME LINE L1 -571 5595 5367 1839 167 0 0 chr13 16590576 16590882 -103154016 + L1PB1 LINE L1 5831 6136 -15 1036 177 24 141 chr13 16590882 16591072 -103153826 - L1ME LINE L1 -799 5367 5156 7646 26 25 21 chr13 16591078 16592105 -103152793 - L1PA4 LINE L1 -8 6147 5120 744 249 61 6 chr13 16592200 16592381 -103152517 - MER58A DNA MER1_type -32 192 2 1571 226 69 24 chr13 16592406 16592857 -103152041 - L1ME LINE L1 -1947 4199 3729 3122 158 23 11 chr13 16592867 16593441 -103151457 - L1MC1 LINE L1 -19 6314 5734 1694 189 0 16 chr13 16595218 16595530 -103149368 - AluJo SINE Alu -5 307 1 430 292 112 11 chr13 16596259 16596536 -103148362 + L1M4 LINE L1 4017 4321 -1825 268 250 158 7 chr13 16596562 16596714 -103148184 + L1M4 LINE L1 4378 4552 -1594 2953 178 61 8 chr13 16596868 16597899 -103146999 - Tigger1 DNA MER2_type 0 2418 1301 289 304 80 22 chr13 16601444 16601582 -103143316 + MER5B DNA MER1_type 1 146 -32 280 293 57 0 chr13 16602161 16602318 -103142580 - L1ME LINE L1 -2402 3744 3579 414 296 76 35 chr13 16602768 16603082 -103141816 - L1ME4a LINE L1 -284 5837 5511 209 211 0 0 chr13 16604706 16604744 -103140154 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 459 292 51 17 chr13 16607904 16608082 -103136816 - L2 LINE L2 -410 2904 2721 2106 83 54 0 chr13 16608741 16609019 -103135879 + AluSp SINE Alu 3 295 -18 1236 185 12 62 chr13 16609392 16609716 -103135182 - L1MB8 LINE L1 0 6178 5871 3457 136 31 4 chr13 16609748 16610262 -103134636 + MER1A DNA MER1_type 2 529 0 1963 167 83 0 chr13 16610262 16610630 -103134268 - MSTB LTR MaLR -23 403 5 590 174 82 10 chr13 16610630 16610765 -103134133 - L1MB8 LINE L1 -308 5876 5743 6435 183 37 91 chr13 16611053 16613112 -103131786 - L1MB8 LINE L1 -756 5390 3433 514 167 29 0 chr13 16613586 16613688 -103131210 - L1MA9 LINE L1 -38 6274 6170 646 297 12 6 chr13 16615273 16615438 -103129460 + FAM SINE Alu 1 166 -9 1606 200 0 20 chr13 16615457 16615752 -103129146 - AluJo SINE Alu -23 289 1 9453 106 16 6 chr13 16616326 16618570 -103126328 - L1PA8 LINE L1 -5 6167 3905 10382 104 10 3 chr13 16618690 16620322 -103124576 - L1P3 LINE L1 -1676 4785 3142 40240 35 27 0 chr13 16620882 16626868 -103118030 - L1PA2 LINE L1 -4 6151 3 11895 129 6 44 chr13 16626868 16627852 -103117046 - L1P3 LINE L1 -3304 3157 2137 2341 40 0 27 chr13 16627852 16628148 -103116750 + L1PA6 LINE L1 5865 6152 -2 11895 129 6 44 chr13 16628148 16630063 -103114835 - L1P3 LINE L1 -4324 2137 299 209 286 71 71 chr13 16630502 16630586 -103114312 + L2 LINE L2 3174 3257 -15 358 320 40 20 chr13 16632662 16632812 -103112086 + MIR3 SINE MIR 8 160 -48 4698 78 17 95 chr13 16634478 16635309 -103109589 - MER4E LTR ERV1 0 766 1 207 323 144 72 chr13 16636182 16636612 -103108286 + L2 LINE L2 2812 3272 0 2236 105 20 0 chr13 16637166 16637470 -103107428 + AluSg SINE Alu 1 310 0 225 0 0 0 chr13 16637801 16637826 -103107072 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 1755 242 73 4 chr13 16637894 16638577 -103106321 - L1MC4 LINE L1 -149 7893 7012 2565 204 35 75 chr13 16638608 16639474 -103105424 - L1MC4 LINE L1 -6 8036 7206 2213 79 3 26 chr13 16639524 16639827 -103105071 + AluSp SINE Alu 14 309 -4 661 145 0 0 chr13 16639827 16639944 -103104954 + L1MA3 LINE L1 6145 6261 -44 414 0 0 0 chr13 16639944 16639990 -103104908 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr13 16639996 16640021 -103104877 + AT_rich Low_complexity Low_complexity 1 25 0 1063 208 5 0 chr13 16640021 16640233 -103104665 - Tigger2 DNA MER2_type -2170 548 336 22 35 0 0 chr13 16643116 16643145 -103101753 + AT_rich Low_complexity Low_complexity 1 29 0 309 264 88 26 chr13 16643318 16643587 -103101311 - L1MC/D LINE L1 -751 5395 5195 12944 185 34 5 chr13 16644103 16645816 -103099082 - L1PB1 LINE L1 -5 6862 5201 387 0 0 0 chr13 16645816 16645859 -103099039 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 12944 185 34 5 chr13 16645859 16648596 -103096302 - L1PB1 LINE L1 -1666 5201 1851 5610 160 24 5 chr13 16648604 16650449 -103094449 - L1PB1 LINE L1 0 6867 4994 350 198 0 0 chr13 16651220 16651301 -103093597 + L1 LINE L1 4213 4293 -1853 9418 196 6 5 chr13 16651303 16653582 -103091316 - L1PB1 LINE L1 -1820 5042 2704 1056 101 6 0 chr13 16653894 16654062 -103090836 - L1PB1 LINE L1 -4149 2714 2546 7224 185 59 6 chr13 16654162 16656413 -103088485 - L1PB1 LINE L1 -4333 2530 1 9991 148 49 3 chr13 16656425 16658210 -103086688 - L1PBa LINE L1 -4996 1867 1 300 333 101 13 chr13 16658470 16658629 -103086269 - L1M4 LINE L1 -2470 3676 3504 402 243 20 47 chr13 16659801 16659949 -103084949 + MLT1F LTR MaLR 14 157 -410 180 77 0 0 chr13 16660022 16660048 -103084850 + (TCC)n Simple_repeat Simple_repeat 2 27 0 677 220 155 22 chr13 16660054 16660277 -103084621 + MLT1F LTR MaLR 170 481 -112 263 286 0 33 chr13 16660303 16660394 -103084504 + L1M3c LINE L1 670 757 -5906 275 274 14 0 chr13 16660718 16660791 -103084107 + L1M3c LINE L1 1453 1526 -5127 1011 225 116 6 chr13 16660846 16661312 -103083586 - L1M4 LINE L1 -2831 3315 2799 4530 141 27 5 chr13 16661674 16662460 -103082438 - L1MA3 LINE L1 -2 6303 5501 361 307 123 43 chr13 16662460 16662623 -103082275 + L1M2 LINE L1 779 954 -5895 2225 119 0 3 chr13 16663005 16663308 -103081590 + AluSx SINE Alu 1 302 -10 207 0 0 0 chr13 16663743 16663766 -103081132 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 10515 208 32 7 chr13 16664725 16667143 -103077755 - L1PA15 LINE L1 -7 6158 3801 626 37 12 0 chr13 16667143 16667224 -103077674 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 10515 208 32 7 chr13 16667224 16667796 -103077102 - L1PA15 LINE L1 -2364 3801 3075 2350 88 3 0 chr13 16667796 16668092 -103076806 - AluSp SINE Alu -1 312 16 10515 208 32 7 chr13 16668092 16668460 -103076438 - L1PA15 LINE L1 -3090 3075 2718 871 130 0 0 chr13 16668462 16668577 -103076321 - AluSq/x SINE Alu -196 117 3 472 274 43 37 chr13 16668730 16668894 -103076004 - L2 LINE L2 -1162 2152 1988 1860 109 76 0 chr13 16668930 16669205 -103075693 - AluSq SINE Alu -17 296 1 1661 160 34 10 chr13 16669249 16669542 -103075356 - AluJb SINE Alu -12 300 1 1904 123 41 0 chr13 16669753 16670022 -103074876 + AluSx SINE Alu 1 280 -32 2339 108 0 13 chr13 16670112 16670428 -103074470 + AluSq SINE Alu 1 312 -1 1431 168 34 48 chr13 16670991 16671212 -103073686 + AluJb SINE Alu 1 219 -93 2338 101 7 0 chr13 16671212 16671519 -103073379 - AluSq SINE Alu -4 309 1 1431 168 34 48 chr13 16671519 16671589 -103073309 + AluJb SINE Alu 219 288 -24 428 284 0 0 chr13 16671645 16671733 -103073165 + AluJ/FLAM SINE Alu 3 90 -222 278 265 114 38 chr13 16671848 16671980 -103072918 - L2 LINE L2 0 3313 3172 182 323 62 21 chr13 16672186 16672282 -103072616 + MIR SINE MIR 12 111 -151 2200 106 7 0 chr13 16672816 16673108 -103071790 + AluSp SINE Alu 2 295 -18 279 203 0 0 chr13 16673400 16673459 -103071439 + (TA)n Simple_repeat Simple_repeat 1 59 0 1161 137 0 12 chr13 16673459 16673627 -103071271 - AluSx SINE Alu -24 286 121 1193 122 0 0 chr13 16674097 16674269 -103070629 + AluSg/x SINE Alu 131 302 -7 2084 130 3 3 chr13 16674358 16674651 -103070247 - AluSx SINE Alu -19 293 1 955 143 0 0 chr13 16674655 16674788 -103070110 - AluSx SINE Alu -180 133 1 203 333 20 50 chr13 16674813 16674912 -103069986 - MER5A DNA MER1_type 0 189 94 560 161 43 0 chr13 16675480 16675573 -103069325 - AluSg/x SINE Alu -9 303 207 1862 178 0 3 chr13 16675710 16676003 -103068895 + AluJo SINE Alu 1 292 -20 320 272 95 44 chr13 16676052 16676210 -103068688 - L1MC/D LINE L1 -1973 5835 5670 2319 88 7 0 chr13 16676212 16676506 -103068392 - AluSx SINE Alu -16 296 1 1855 122 89 0 chr13 16676622 16676893 -103068005 - AluSx SINE Alu -17 295 1 1736 125 0 57 chr13 16676902 16677199 -103067699 - AluSg SINE Alu -6 304 25 225 74 0 0 chr13 16677199 16677226 -103067672 - AluSg SINE Alu -258 44 18 850 142 0 0 chr13 16677226 16677367 -103067531 + AluSc SINE Alu 166 306 -3 1734 99 0 0 chr13 16677522 16677745 -103067153 + AluY SINE Alu 72 294 -17 198 0 0 0 chr13 16678029 16678051 -103066847 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1808 113 12 4 chr13 16678051 16678308 -103066590 - AluSx SINE Alu -29 283 25 822 207 0 7 chr13 16678771 16678916 -103065982 + FRAM SINE Alu 20 163 -13 2303 106 0 0 chr13 16678932 16679234 -103065664 - AluSp SINE Alu -11 302 1 787 171 16 0 chr13 16679234 16679357 -103065541 - AluJb SINE Alu -175 137 13 368 232 65 32 chr13 16679393 16679552 -103065346 - AluS SINE Alu -245 57 1 1992 153 0 0 chr13 16679595 16679882 -103065016 - AluSx SINE Alu -25 287 1 22886 61 1 0 chr13 16680149 16682983 -103061915 + L1P LINE L1 1 2835 -3311 33853 41 2 2 chr13 16682990 16687039 -103057859 + L1P LINE L1 5 4052 -2094 720 149 0 18 chr13 16687142 16687256 -103057642 + FLAM_A SINE Alu 5 116 -17 2314 93 0 3 chr13 16687261 16687561 -103057337 - AluY SINE Alu -12 299 1 661 165 26 9 chr13 16687971 16688086 -103056812 + FLAM_A SINE Alu 1 117 -16 4895 179 37 5 chr13 16688155 16689029 -103055869 - L1MC1 LINE L1 -17 6316 5415 590 311 7 0 chr13 16689400 16689551 -103055347 - FRAM SINE Alu -24 152 1 306 0 0 0 chr13 16689553 16689587 -103055311 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1518 122 0 5 chr13 16689587 16689801 -103055097 - AluSg/x SINE Alu -29 283 71 1535 185 7 14 chr13 16689801 16690077 -103054821 + AluJo SINE Alu 17 290 -22 21 71 0 0 chr13 16691040 16691082 -103053816 + AT_rich Low_complexity Low_complexity 1 42 0 1691 168 18 3 chr13 16691743 16692029 -103052869 - AluJb SINE Alu -12 300 11 2361 72 0 7 chr13 16694751 16695055 -103049843 + AluY SINE Alu 1 302 -9 2209 117 0 0 chr13 16695678 16695987 -103048911 - AluSg SINE Alu -1 309 1 21 36 0 0 chr13 16696340 16696368 -103048530 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr13 16696446 16696476 -103048422 + AT_rich Low_complexity Low_complexity 1 30 0 294 271 37 19 chr13 16696682 16696789 -103048109 - MER104 DNA Tc2 -61 119 11 1408 51 0 29 chr13 16697500 16697675 -103047223 + AluY SINE Alu 124 293 -18 207 88 0 0 chr13 16699249 16699283 -103045615 + (T)n Simple_repeat Simple_repeat 1 34 0 940 153 26 37 chr13 16700586 16700775 -103044123 - MLT1B LTR MaLR -203 187 1 208 320 61 48 chr13 16700776 16700923 -103043975 + L2 LINE L2 1267 1415 -1899 2244 117 0 0 chr13 16701056 16701363 -103043535 + AluSx SINE Alu 6 312 0 1438 75 0 0 chr13 16701473 16701647 -103043251 - AluSq SINE Alu -6 307 134 1874 110 0 53 chr13 16701652 16701994 -103042904 - AluSx SINE Alu 0 326 1 2161 236 75 10 chr13 16702043 16702745 -103042153 + L1ME LINE L1 3124 3871 -2275 1712 136 48 0 chr13 16702834 16703106 -103041792 - AluJb SINE Alu -27 285 1 2367 203 68 71 chr13 16703106 16703342 -103041556 + L1ME LINE L1 4571 4806 -1360 1881 133 9 59 chr13 16703342 16703666 -103041232 + AluJb SINE Alu 1 308 -4 2367 203 68 71 chr13 16703666 16703797 -103041101 + L1ME LINE L1 4806 4936 -1230 1722 155 20 30 chr13 16703797 16704101 -103040797 - AluSx SINE Alu -11 301 1 2367 203 68 71 chr13 16704101 16704113 -103040785 + L1ME LINE L1 4936 4947 -1219 2093 113 17 0 chr13 16704113 16704404 -103040494 - AluSx SINE Alu -16 296 1 2367 203 68 71 chr13 16704404 16704435 -103040463 + L1ME LINE L1 4947 4977 -1189 2245 87 0 14 chr13 16704435 16704749 -103040149 - AluSq SINE Alu 0 310 1 2367 203 68 71 chr13 16704749 16705266 -103039632 + L1ME LINE L1 4977 5490 -676 2159 104 0 29 chr13 16705266 16705399 -103039499 + AluSc SINE Alu 1 136 -173 1815 119 87 0 chr13 16705399 16705676 -103039222 + AluSg SINE Alu 1 301 -9 2159 104 0 29 chr13 16705676 16705851 -103039047 + AluSc SINE Alu 136 300 -9 482 174 56 18 chr13 16705860 16705988 -103038910 + L1ME LINE L1 5676 5813 -371 * 532 233 31 74 chr13 16705986 16706047 -103038851 - L1M4 LINE L1 -2474 3672 3610 2111 113 25 0 chr13 16706047 16706330 -103038568 - AluSx SINE Alu -22 290 1 532 233 31 74 chr13 16706330 16706499 -103038399 - L1M4 LINE L1 -2536 3610 3455 278 256 149 18 chr13 16706589 16706703 -103038195 + MLT1K LTR MaLR 87 230 -358 1767 172 7 0 chr13 16706856 16707146 -103037752 - AluJb SINE Alu -20 292 1 3137 168 99 80 chr13 16707146 16707241 -103037657 - L1MDa LINE L1 -4577 1963 1871 2476 74 3 0 chr13 16707241 16707539 -103037359 - AluSg SINE Alu -11 299 1 3137 168 99 80 chr13 16707539 16707818 -103037080 - L1MDa LINE L1 -4669 1871 1599 432 0 0 0 chr13 16707818 16707866 -103037032 + (TA)n Simple_repeat Simple_repeat 2 49 0 2011 104 0 0 chr13 16707867 16708127 -103036771 - AluSg SINE Alu -16 294 35 3137 168 99 80 chr13 16708127 16708299 -103036599 - L1MDa LINE L1 -4941 1599 1432 2324 99 0 0 chr13 16708299 16708593 -103036305 - AluSc SINE Alu -15 294 1 3137 168 99 80 chr13 16708593 16708614 -103036284 - L1MDa LINE L1 -5108 1432 1413 2102 124 0 13 chr13 16708614 16708912 -103035986 - AluSx SINE Alu -18 294 1 3137 168 99 80 chr13 16708912 16709339 -103035559 - L1MDa LINE L1 -5127 1413 945 380 71 18 0 chr13 16709704 16709760 -103035138 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 212 328 0 0 chr13 16709760 16709821 -103035077 - L2 LINE L2 -9 3263 3203 266 186 29 0 chr13 16709985 16710055 -103034843 + GA-rich Low_complexity Low_complexity 3 74 0 2022 162 154 0 chr13 16711172 16711543 -103033355 - MSTA LTR MaLR 0 428 1 364 153 0 71 chr13 16711543 16711628 -103033270 - MSTA-int LTR MaLR 0 1580 1502 2252 88 0 10 chr13 16711628 16711935 -103032963 - AluY SINE Alu -7 304 1 2625 43 0 7 chr13 16712102 16712404 -103032494 - AluY SINE Alu -11 300 1 324 0 0 0 chr13 16713130 16713166 -103031732 + (CA)n Simple_repeat Simple_repeat 2 37 0 769 196 0 14 chr13 16713186 16713505 -103031393 + FLAM_C SINE Alu 3 319 0 334 302 100 4 chr13 16713336 16713530 -103031368 + HAL1 LINE L1 1105 3200 -1203 * 348 153 0 112 chr13 16714866 16714964 -103029934 + L1ME4a LINE L1 6035 6121 0 1313 176 179 3 chr13 16714970 16715266 -103029632 + MER7A DNA MER2_type 1 346 0 1136 191 120 32 chr13 16715343 16715684 -103029214 + MLT1A2 LTR MaLR 2 372 -2 536 197 0 16 chr13 16716100 16716227 -103028671 + FLAM_A SINE Alu 17 141 -1 1218 151 82 0 chr13 16716360 16716592 -103028306 + LTR23 LTR ERV1 2 252 -185 411 178 0 0 chr13 16716604 16716677 -103028221 + FLAM SINE Alu 46 118 -15 892 91 57 62 chr13 16716683 16716823 -103028075 + LTR23 LTR ERV1 245 385 -52 1962 132 0 55 chr13 16716823 16717149 -103027749 - AluSx SINE Alu -4 308 1 892 91 57 62 chr13 16717149 16717184 -103027714 + LTR23 LTR ERV1 385 419 -18 1879 82 71 0 chr13 16717185 16717467 -103027431 - AluSx SINE Alu 0 311 12 251 373 8 0 chr13 16718427 16718553 -103026345 - Charlie1 DNA MER1_type -2 2759 2633 1373 186 12 0 chr13 16718554 16718807 -103026091 + AluJo SINE Alu 41 296 -16 1540 156 62 28 chr13 16718885 16719069 -103025829 - AluJb SINE Alu -13 299 100 2217 98 21 0 chr13 16719069 16719355 -103025543 + AluY SINE Alu 1 292 -19 1540 156 62 28 chr13 16719355 16719459 -103025439 - AluJb SINE Alu -212 100 1 1034 276 60 10 chr13 16719462 16719860 -103025038 - LTR33 LTR ERVL -94 427 10 27 0 0 0 chr13 16720209 16720236 -103024662 + AT_rich Low_complexity Low_complexity 1 27 0 2158 136 3 0 chr13 16721718 16722020 -103022878 + AluSx SINE Alu 1 303 -9 1964 127 99 0 chr13 16723108 16723392 -103021506 - AluSx SINE Alu 0 312 1 1690 185 12 0 chr13 16723473 16723727 -103021171 - AluSx SINE Alu -55 257 1 396 171 14 0 chr13 16723730 16723800 -103021098 - AluJ/FRAM SINE Alu -5 297 227 2111 128 3 0 chr13 16723825 16724122 -103020776 + AluSx SINE Alu 5 302 -10 413 273 101 22 chr13 16724122 16724261 -103020637 - MER58A DNA MER1_type -33 191 42 2345 66 0 14 chr13 16724582 16724897 -103020001 - AluY SINE Alu 0 311 1 1554 176 54 7 chr13 16724897 16725176 -103019722 - AluJb SINE Alu -17 295 4 590 160 0 0 chr13 16725431 16725531 -103019367 + AluJ/FLAM SINE Alu 2 101 -211 21 0 0 0 chr13 16726799 16726820 -103018078 + AT_rich Low_complexity Low_complexity 1 21 0 488 234 64 28 chr13 16728081 16728222 -103016676 + LTR42 LTR ERVL 1 146 -349 495 152 0 0 chr13 16728222 16728301 -103016597 + AluJb SINE Alu 210 288 -24 244 131 82 0 chr13 16728312 16728373 -103016525 + T-rich Low_complexity Low_complexity 4 69 0 204 288 0 0 chr13 16730485 16730558 -103014340 + T-rich Low_complexity Low_complexity 1 73 0 205 111 74 0 chr13 16730564 16730618 -103014280 + (TA)n Simple_repeat Simple_repeat 1 58 0 2107 120 0 0 chr13 16730618 16730892 -103014006 - AluSx SINE Alu -26 286 13 1279 167 94 45 chr13 16730913 16731201 -103013697 - AluJo SINE Alu -10 302 1 2092 139 7 0 chr13 16731207 16731508 -103013390 - AluSx SINE Alu -9 303 1 799 199 165 79 chr13 16731518 16731784 -103013114 - AluJo SINE Alu -12 290 2 1248 296 60 46 chr13 16731788 16731858 -103013040 - L1MC4 LINE L1 0 8042 7974 1788 195 10 3 chr13 16731858 16732156 -103012742 + AluJo SINE Alu 7 306 -6 1248 296 60 46 chr13 16732156 16732802 -103012096 - L1MC4 LINE L1 -68 7974 7316 1705 186 28 3 chr13 16732825 16733116 -103011782 + AluSx SINE Alu 1 298 -14 1145 184 87 5 chr13 16733128 16733335 -103011563 + AluJo SINE Alu 88 311 -1 711 200 0 0 chr13 16733338 16733468 -103011430 - AluJo/FLAM SINE Alu -172 130 1 659 256 45 76 chr13 16733469 16733758 -103011140 - L1MC4 LINE L1 -823 7219 6940 2335 111 3 0 chr13 16733952 16734259 -103010639 + AluSx SINE Alu 5 312 0 1941 130 23 27 chr13 16735128 16735275 -103009623 - AluSx SINE Alu -12 300 154 5738 136 27 32 chr13 16735275 16736352 -103008546 + MER11C LTR ERVK 1 1071 0 1941 130 23 27 chr13 16736352 16736505 -103008393 - AluSx SINE Alu -158 154 1 760 118 30 7 chr13 16736528 16736663 -103008235 - L1MB2 LINE L1 -4 6167 6030 663 148 0 33 chr13 16736685 16736807 -103008091 + FLAM_C SINE Alu 16 133 -10 1152 193 23 42 chr13 16736825 16737090 -103007808 - L1MB2 LINE L1 -188 5995 5736 1624 197 38 0 chr13 16737090 16737380 -103007518 - AluJo SINE Alu -8 304 4 1098 256 37 8 chr13 16737384 16737735 -103007163 - L1MB2 LINE L1 -941 5205 4845 240 258 62 31 chr13 16738804 16738901 -103005997 + MER5A DNA MER1_type 8 107 -82 2157 141 0 0 chr13 16742358 16742656 -103002242 - AluSx SINE Alu -9 303 6 1862 167 0 13 chr13 16742727 16743027 -103001871 + AluJo SINE Alu 1 296 -16 1507 216 7 7 chr13 16743602 16743894 -103001004 - AluJo SINE Alu -18 294 3 268 308 10 0 chr13 16744911 16745015 -102999883 + MIR SINE MIR 61 165 -97 467 179 109 98 chr13 16750104 16750193 -102994705 - L1MB8 LINE L1 -37 6141 6054 1908 162 20 0 chr13 16750193 16750489 -102994409 - AluSx SINE Alu -8 304 3 467 179 109 98 chr13 16750489 16750583 -102994315 - L1MB8 LINE L1 -124 6054 5956 1601 233 55 37 chr13 16750583 16751072 -102993826 + MLT1D LTR MaLR 1 498 -7 1897 212 41 91 chr13 16751078 16752017 -102992881 + MLT1D-int LTR MaLR 2 875 -496 3010 169 58 37 chr13 16752194 16752234 -102992664 - L1MB8 LINE L1 -205 5973 5935 2103 134 3 0 chr13 16752234 16752532 -102992366 - AluSg SINE Alu -11 299 1 3010 169 58 37 chr13 16752532 16752939 -102991959 - L1MB8 LINE L1 -243 5935 5538 1606 166 68 7 chr13 16752939 16753217 -102991681 + AluSx SINE Alu 2 296 -16 3010 169 58 37 chr13 16753217 16753739 -102991159 - L1MB8 LINE L1 -640 5538 4981 2218 111 0 20 chr13 16753881 16754178 -102990720 + AluSg SINE Alu 5 295 -15 472 157 0 0 chr13 16754613 16754696 -102990202 + FLAM_C SINE Alu 61 143 0 1219 180 28 14 chr13 16755179 16755396 -102989502 - AluJo SINE Alu -11 301 82 2612 47 0 7 chr13 16755737 16756036 -102988862 - AluY SINE Alu -14 297 1 1787 156 10 34 chr13 16756101 16756396 -102988502 + AluJb SINE Alu 1 288 -24 1678 153 17 27 chr13 16756428 16756728 -102988170 + AluJo SINE Alu 14 310 -2 416 131 0 0 chr13 16756821 16756882 -102988016 - U6 snRNA snRNA -46 61 1 266 298 63 63 chr13 16757183 16757499 -102987399 + L2 LINE L2 1695 2010 -1304 800 249 139 79 chr13 16757623 16757685 -102987213 - L2 LINE L2 0 3313 3256 708 190 0 29 chr13 16757685 16757822 -102987076 + FLAM_C SINE Alu 1 133 0 800 249 139 79 chr13 16757822 16758021 -102986877 - L2 LINE L2 -57 3256 3070 1143 209 129 0 chr13 16758021 16758284 -102986614 - AluJo SINE Alu -5 297 1 1715 183 3 29 chr13 16758285 16758591 -102986307 - AluJo SINE Alu -14 298 1 800 249 139 79 chr13 16758591 16758807 -102986091 - L2 LINE L2 -242 3071 2804 681 291 25 42 chr13 16759292 16759577 -102985321 - L2 LINE L2 -757 2557 2278 457 154 0 0 chr13 16759744 16759822 -102985076 - MADE1 DNA Mariner 0 80 3 1796 174 14 0 chr13 16760761 16761054 -102983844 + AluJb SINE Alu 1 297 -15 2165 124 17 3 chr13 16761058 16761357 -102983541 + AluSq SINE Alu 1 303 -10 2278 116 0 16 chr13 16762523 16762834 -102982064 + AluSx SINE Alu 1 306 -6 327 179 43 0 chr13 16762834 16762974 -102981924 + (TA)n Simple_repeat Simple_repeat 1 146 0 2190 114 0 0 chr13 16763403 16763684 -102981214 - AluSx SINE Alu -15 297 17 1711 164 32 0 chr13 16764405 16764685 -102980213 + AluJo SINE Alu 1 289 -23 852 187 94 0 chr13 16764767 16764938 -102979960 - MER5A DNA MER1_type 0 189 3 400 236 162 42 chr13 16765184 16765234 -102979664 + L1MC5 LINE L1 7609 7652 -309 1846 155 7 0 chr13 16765234 16765505 -102979393 + AluSx SINE Alu 6 278 -34 400 236 162 42 chr13 16765505 16765645 -102979253 + L1MC5 LINE L1 7652 7822 -139 1136 147 17 6 chr13 16765646 16765823 -102979075 + AluSg/x SINE Alu 127 305 -7 1595 223 0 0 chr13 16765829 16766120 -102978778 + AluJb SINE Alu 3 293 -19 2151 116 10 3 chr13 16766174 16766466 -102978432 + AluSq SINE Alu 1 294 -19 2027 161 0 3 chr13 16766508 16766813 -102978085 - AluSx SINE Alu -8 304 1 330 332 212 12 chr13 16766865 16767124 -102977774 - L3 LINE CR1 -72 1505 1195 2069 161 0 0 chr13 16767578 16767883 -102977015 + AluJo SINE Alu 1 305 -7 24 0 0 0 chr13 16768861 16768885 -102976013 + AT_rich Low_complexity Low_complexity 1 24 0 635 280 104 45 chr13 16769053 16769389 -102975509 + L2 LINE L2 2077 2432 -882 1675 153 15 70 chr13 16769489 16769816 -102975082 + AluJb SINE Alu 1 309 -3 291 347 66 33 chr13 16769853 16770066 -102974832 - L2 LINE L2 -67 3205 2986 1841 164 20 0 chr13 16770374 16770666 -102974232 - AluJo SINE Alu -14 298 1 21 0 0 0 chr13 16771540 16771561 -102973337 + AT_rich Low_complexity Low_complexity 1 21 0 646 151 0 0 chr13 16772133 16772226 -102972672 + AluJ/FLAM SINE Alu 2 94 -218 303 261 0 0 chr13 16772253 16772318 -102972580 - L1MC4 LINE L1 -1338 6704 6640 1921 164 0 3 chr13 16772321 16772613 -102972285 - AluSx SINE Alu -21 291 1 928 169 48 6 chr13 16772629 16772795 -102972103 + FRAM SINE Alu 1 165 -11 512 243 55 81 chr13 16774711 16775384 -102969514 + HSREP522 Satellite telomeric 1 655 -203 1076 86 0 0 chr13 16776652 16776791 -102968107 - MER85 DNA T2_type 0 139 1 1999 112 4 0 chr13 16776981 16777248 -102967650 - AluSp SINE Alu -45 268 1 1990 154 0 3 chr13 16777350 16777648 -102967250 - AluSq SINE Alu -16 297 1 22 0 0 0 chr13 16777770 16777792 -102967106 + AT_rich Low_complexity Low_complexity 1 22 0 1558 180 23 4 chr13 16778221 16778482 -102966416 - AluJb SINE Alu -44 268 3 983 42 8 8 chr13 16778517 16778635 -102966263 + AluYb8 SINE Alu 2 119 -199 612 147 0 0 chr13 16778637 16778746 -102966152 - L1 LINE L1 -1399 4747 4639 1000 103 23 34 chr13 16779159 16779334 -102965564 - LTR8-int LTR ERV1 -6261 337 165 685 183 4 22 chr13 16779332 16779567 -102965331 + MER4-int LTR ERV1 307 579 -6019 * 862 147 96 48 chr13 16779574 16779923 -102964975 + MER4-int LTR ERV1 503 786 -4229 * 3777 116 84 30 chr13 16779891 16780132 -102964766 + MER4-int LTR ERV1 1776 2002 -4596 2688 167 51 93 chr13 16780132 16780294 -102964604 - LTR8 LTR ERV1 -1 690 523 2051 153 0 0 chr13 16780294 16780595 -102964303 - AluY SINE Alu -10 301 1 2688 167 51 93 chr13 16780595 16781152 -102963746 - LTR8 LTR ERV1 -168 523 1 3777 116 84 30 chr13 16781152 16781684 -102963214 + MER4-int LTR ERV1 2002 2591 -4007 37456 56 30 42 chr13 16782959 16788418 -102956480 + L1P LINE L1 2 5391 -755 275 194 32 0 chr13 16789460 16789522 -102955376 - MER53 DNA DNA -125 64 1 322 156 38 31 chr13 16789693 16789853 -102955045 + (TG)n Simple_repeat Simple_repeat 1 161 0 220 198 146 23 chr13 16790017 16790131 -102954767 + MIR SINE MIR 55 184 -65 453 228 0 0 chr13 16790288 16790380 -102954518 - 5S rRNA rRNA -28 93 2 301 274 68 72 chr13 16791447 16791710 -102953188 - L1MEd LINE L1 -4963 1156 895 2055 146 3 10 chr13 16791727 16792035 -102952863 - AluSx SINE Alu -6 306 1 1684 174 3 49 chr13 16794233 16794537 -102950361 + AluJo SINE Alu 17 306 -6 422 330 48 35 chr13 16795534 16795764 -102949134 + L1MC4a LINE L1 5342 5574 -2234 261 236 24 79 chr13 16795910 16796037 -102948861 + L1MC4a LINE L1 5819 5938 -1870 1695 192 0 14 chr13 16796253 16796545 -102948353 + AluJo SINE Alu 6 293 -19 763 120 0 0 chr13 16796631 16796731 -102948167 - AluSp/q SINE Alu -19 294 195 4972 194 125 45 chr13 16797032 16797715 -102947183 + L1MCa LINE L1 807 1433 -4993 2088 126 20 0 chr13 16797715 16798016 -102946882 + AluSg SINE Alu 4 310 0 4972 194 125 45 chr13 16798016 16799206 -102945692 + L1MCa LINE L1 1433 3890 -2536 341 174 87 0 chr13 16799209 16799278 -102945620 + L1MCa LINE L1 3921 3995 -2431 4256 229 68 29 chr13 16799430 16799631 -102945267 - L1M4 LINE L1 -496 5678 5486 1986 155 0 0 chr13 16799631 16799928 -102944970 + AluSx SINE Alu 2 298 -14 4256 229 68 29 chr13 16799928 16801026 -102943872 - L1M4 LINE L1 -688 5486 4285 2081 127 14 0 chr13 16801026 16801318 -102943580 - AluY SINE Alu -15 296 1 4256 229 68 29 chr13 16801318 16801765 -102943133 - L1M4 LINE L1 -1889 4285 3857 2020 246 29 9 chr13 16802024 16802578 -102942320 - L1M4 LINE L1 -2293 3853 3289 1853 143 7 20 chr13 16802747 16803047 -102941851 - AluSx SINE Alu -16 296 1 1858 159 41 9 chr13 16806279 16806624 -102938274 - MLT1A1 LTR MaLR 0 365 10 207 100 0 0 chr13 16806632 16806662 -102938236 + (TG)n Simple_repeat Simple_repeat 1 30 0 222 175 95 16 chr13 16807535 16807598 -102937300 + MIR SINE MIR 79 146 -62 342 158 26 66 chr13 16808899 16808975 -102935923 - MIR SINE MIR -140 122 50 233 286 0 0 chr13 16809545 16809594 -102935304 + (TG)n Simple_repeat Simple_repeat 1 49 0 240 326 0 0 chr13 16811552 16811638 -102933260 - MIR SINE MIR -19 243 158 676 312 111 37 chr13 16811790 16811943 -102932955 - L1MC5 LINE L1 -31 7930 7790 1967 163 0 0 chr13 16811943 16812244 -102932654 + AluSx SINE Alu 1 301 -11 676 312 111 37 chr13 16812244 16812687 -102932211 - L1MC5 LINE L1 -171 7790 7290 234 216 127 94 chr13 16812847 16813028 -102931870 - L1MC5 LINE L1 -781 7180 6994 454 226 57 8 chr13 16813051 16813175 -102931723 - MER53 DNA DNA -59 130 1 244 282 11 39 chr13 16814160 16814341 -102930557 + (CA)n Simple_repeat Simple_repeat 1 176 0 251 330 41 10 chr13 16817506 16817603 -102927295 + MIR3 SINE MIR 66 165 -43 255 260 115 19 chr13 16818599 16818703 -102926195 + MIR SINE MIR 29 142 -120 1412 212 32 39 chr13 16819013 16819493 -102925405 + MLT2A2 LTR ERVL 65 552 -2 822 306 101 8 chr13 16819493 16819849 -102925049 - L2 LINE L2 -1732 1582 1194 26 30 0 0 chr13 16819860 16819893 -102925005 + AT_rich Low_complexity Low_complexity 1 33 0 2896 168 28 6 chr13 16819897 16820426 -102924472 - L1MC1 LINE L1 -257 6076 5536 423 204 0 32 chr13 16821616 16821709 -102923189 + L2 LINE L2 2665 2754 -560 339 275 79 85 chr13 16821725 16822193 -102922705 - MLT1G1 LTR MaLR -8 541 79 2423 57 6 50 chr13 16822193 16822511 -102922387 - AluY SINE Alu -7 304 1 339 275 79 85 chr13 16822511 16822585 -102922313 - MLT1G1 LTR MaLR -470 79 6 561 257 31 123 chr13 16822591 16822848 -102922050 + L2 LINE L2 2756 2976 -337 1773 140 21 14 chr13 16822848 16823133 -102921765 - AluSx SINE Alu -14 298 12 561 257 31 123 chr13 16823133 16823218 -102921680 + L2 LINE L2 2976 3067 -246 497 321 7 0 chr13 16823511 16823651 -102921247 - L2 LINE L2 -940 2374 2234 1274 165 27 9 chr13 16823656 16823880 -102921018 - MLT1E1 LTR MaLR -1 653 426 620 245 22 0 chr13 16823880 16824019 -102920879 - HERV16 LTR ERVL -4385 611 470 630 221 28 7 chr13 16824115 16824260 -102920638 - HERV16 LTR ERVL -4539 457 310 670 276 56 5 chr13 16824367 16824563 -102920335 - LTR16A LTR ERVL -179 271 66 1438 231 120 74 chr13 16824714 16825083 -102919815 - L1ME3A LINE L1 -31 6139 5730 397 21 0 0 chr13 16825083 16825131 -102919767 + L1PA4 LINE L1 6108 6155 0 1438 231 120 74 chr13 16825131 16825359 -102919539 - L1ME3A LINE L1 -440 5730 5514 943 231 114 108 chr13 16825904 16826925 -102917973 - L1MC5 LINE L1 -901 6907 5853 271 185 9 9 chr13 16827186 16827294 -102917604 + (GAATG)n Satellite Satellite 2 109 0 877 115 6 6 chr13 16827317 16827482 -102917416 + (GAATG)n Satellite Satellite 4 168 0 186 150 0 0 chr13 16827500 16827540 -102917358 + (GAATG)n Satellite Satellite 1 40 0 684 202 0 0 chr13 16827565 16827899 -102916999 + (GAATG)n Satellite Satellite 1 334 0 747 173 0 0 chr13 16827946 16828253 -102916645 + (GAATG)n Satellite Satellite 1 307 0 741 163 0 0 chr13 16828265 16828443 -102916455 + (GAATG)n Satellite Satellite 3 180 0 697 177 2 2 chr13 16828456 16828962 -102915936 + (GAATG)n Satellite Satellite 1 506 0 727 174 0 28 chr13 16829016 16829541 -102915357 + (GAATG)n Satellite Satellite 1 510 0 852 149 0 0 chr13 16829552 16829910 -102914988 + (GAATG)n Satellite Satellite 1 358 0 705 171 0 0 chr13 16829976 16830151 -102914747 + (GAATG)n Satellite Satellite 2 176 0 752 171 8 9 chr13 16830210 16830860 -102914038 + (GAATG)n Satellite Satellite 1 649 0 924 127 0 0 chr13 16830883 16831048 -102913850 + (GAATG)n Satellite Satellite 4 168 0 807 107 0 41 chr13 16832199 16832321 -102912577 + AluSg/x SINE Alu 175 291 -19 2196 129 0 0 chr13 16832332 16832635 -102912263 + AluSx SINE Alu 1 303 -9 927 107 0 0 chr13 16832982 16833103 -102911795 + AluSq/x SINE Alu 1 121 -191 2254 91 0 14 chr13 16833543 16833839 -102911059 - AluY SINE Alu -19 292 1 23 0 0 0 chr13 16833887 16833910 -102910988 + AT_rich Low_complexity Low_complexity 1 23 0 1951 106 6 91 chr13 16834507 16834836 -102910062 + AluSx SINE Alu 1 301 -11 360 279 93 29 chr13 16835303 16835507 -102909391 - L1ME4a LINE L1 -260 5861 5645 27 29 0 0 chr13 16835822 16835856 -102909042 + AT_rich Low_complexity Low_complexity 1 34 0 2018 242 93 16 chr13 16836552 16836909 -102907989 - L1MA9 LINE L1 -25 6287 5959 342 0 0 0 chr13 16836909 16836947 -102907951 + (TG)n Simple_repeat Simple_repeat 1 38 0 2018 242 93 16 chr13 16836947 16837204 -102907694 - L1MA9 LINE L1 -353 5959 5626 214 296 12 37 chr13 16837619 16837700 -102907198 + L2 LINE L2 3172 3250 -63 647 116 187 13 chr13 16838255 16838410 -102906488 - L1MA9 LINE L1 0 6312 6131 1896 150 14 0 chr13 16838415 16838708 -102906190 + AluSx SINE Alu 1 297 -15 237 175 198 63 chr13 16838734 16838860 -102906038 + HAL1 LINE L1 836 978 -1529 2120 148 0 0 chr13 16838911 16839216 -102905682 + AluSx SINE Alu 1 305 -7 701 183 22 29 chr13 16839279 16839416 -102905482 - MER68 LTR ERV1 0 562 427 903 176 50 5 chr13 16839594 16839797 -102905101 + MLT1D LTR MaLR 227 423 -82 2179 118 7 3 chr13 16840837 16841142 -102903756 - AluSg SINE Alu -4 306 1 278 287 134 30 chr13 16841506 16841670 -102903228 + MIR SINE MIR 81 261 -1 4371 114 16 41 chr13 16843036 16843434 -102901464 + Tigger1 DNA MER2_type 1064 1471 -947 1376 196 17 33 chr13 16843434 16843735 -102901163 - AluJo SINE Alu -16 296 1 4371 114 16 41 chr13 16843735 16843769 -102901129 + Tigger1 DNA MER2_type 1471 1504 -914 2308 98 0 3 chr13 16843769 16844065 -102900833 + AluY SINE Alu 1 295 -16 4371 114 16 41 chr13 16844065 16844334 -102900564 + Tigger1 DNA MER2_type 1504 1748 -670 2067 120 3 0 chr13 16844411 16844694 -102900204 + AluSp SINE Alu 19 302 -11 1779 157 23 0 chr13 16844694 16844993 -102899905 + Tigger1 DNA MER2_type 1739 2044 -374 435 223 54 9 chr13 16844991 16845103 -102899795 + Tigger1 DNA MER2_type 2302 2418 0 * 927 239 127 14 chr13 16845748 16846032 -102898866 - MER33 DNA MER1_type -1 323 8 1527 193 24 20 chr13 16846152 16846447 -102898451 - AluJo SINE Alu -16 296 1 452 201 27 121 chr13 16848326 16848475 -102896423 - L1MB7 LINE L1 -9 6175 6041 1719 214 79 46 chr13 16848535 16848991 -102895907 - L1MB7 LINE L1 -294 5884 5397 1682 167 3 17 chr13 16848991 16849279 -102895619 - AluJb SINE Alu -7 305 22 1719 214 79 46 chr13 16849279 16849462 -102895436 - L1MB7 LINE L1 -781 5397 5222 1011 308 173 35 chr13 16849540 16850492 -102894406 + L2 LINE L2 1852 2935 -379 342 215 0 0 chr13 16850711 16850790 -102894108 + C-rich Low_complexity Low_complexity 3 81 0 1791 167 24 0 chr13 16850790 16851084 -102893814 - AluSg SINE Alu -9 301 1 4610 193 37 35 chr13 16852170 16853951 -102890947 - L1MB3 LINE L1 -2 6181 4398 2223 135 21 52 chr13 16856381 16856962 -102887936 - MER4A LTR ERV1 0 664 34 549 261 151 13 chr13 16857384 16857695 -102887203 - Charlie7 DNA MER1_type -262 2350 1997 399 170 2 17 chr13 16857696 16857785 -102887113 - L1MA6 LINE L1 -17 6283 6196 245 287 205 23 chr13 16858365 16858550 -102886348 - MIR SINE MIR -25 237 23 303 210 0 0 chr13 16858591 16858653 -102886245 + L1MC4 LINE L1 6642 6703 -1339 301 200 0 0 chr13 16858700 16858760 -102886138 - L1MC4 LINE L1 -1341 6701 6642 1090 195 191 24 chr13 16858760 16859006 -102885892 + AluJo SINE Alu 1 287 -15 7544 94 21 21 chr13 16859516 16860523 -102884375 - LTR13 LTR ERVK 0 1007 1 965 190 124 13 chr13 16862317 16862543 -102882355 - L1MB2 LINE L1 0 6171 5921 373 283 61 11 chr13 16862803 16862983 -102881915 - L1M4 LINE L1 -919 5227 5039 510 251 57 28 chr13 16862986 16863233 -102881665 - Charlie5 DNA MER1_type -27 2585 2332 1028 247 80 37 chr13 16863273 16863710 -102881188 - L1M4 LINE L1 -1113 5033 4578 188 200 150 50 chr13 16865737 16865817 -102879081 - MIR SINE MIR -75 133 46 27732 129 32 20 chr13 16866027 16866590 -102878308 + L1P3 LINE L1 689 1244 -5243 291 71 0 0 chr13 16866590 16866632 -102878266 + (CAA)n Simple_repeat Simple_repeat 1 42 0 27732 129 32 20 chr13 16866632 16871124 -102873774 + L1P3 LINE L1 1244 5810 -677 228 216 39 0 chr13 16871124 16871175 -102873723 - L1MA6 LINE L1 -128 6172 6120 192 340 118 7 chr13 16871251 16871395 -102873503 + L2 LINE L2 799 958 -2356 292 146 0 0 chr13 16871398 16871446 -102873452 - Alu SINE Alu -7 295 248 5411 104 8 1 chr13 16871446 16872177 -102872721 + THE1B-int LTR MaLR 845 1580 0 2275 105 21 43 chr13 16872177 16872412 -102872486 + THE1B LTR MaLR 1 227 -137 2349 81 0 7 chr13 16872412 16872721 -102872177 + AluY SINE Alu 1 307 -4 2275 105 21 43 chr13 16872721 16872857 -102872041 + THE1B LTR MaLR 227 364 0 222 213 107 40 chr13 16872867 16872942 -102871956 - MIR SINE MIR -119 143 64 255 301 7 7 chr13 16873222 16873315 -102871583 + CT-rich Low_complexity Low_complexity 1 93 0 1567 171 0 18 chr13 16873315 16873596 -102871302 - AluJb SINE Alu -36 276 1 1410 193 76 6 chr13 16873913 16874229 -102870669 - MER44D DNA MER2_type 0 609 2 356 330 85 23 chr13 16874239 16874415 -102870483 + L2 LINE L2 3126 3312 -1 1306 193 64 0 chr13 16874636 16874901 -102869997 - AluJo SINE Alu -30 282 1 202 263 34 17 chr13 16876958 16877076 -102867822 + (TCTG)n Simple_repeat Simple_repeat 1 120 0 357 82 0 0 chr13 16880375 16880424 -102864474 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 269 254 55 12 chr13 16881292 16881457 -102863441 + (TCTG)n Simple_repeat Simple_repeat 1 172 0 360 295 13 36 chr13 16881511 16881768 -102863130 - L1M LINE L1 -786 5360 5116 1774 191 23 22 chr13 16882649 16883023 -102861875 + MLT2C1 LTR ERVL 1 444 -20 268 295 27 36 chr13 16883024 16883136 -102861762 + (TCTCTG)n Simple_repeat Simple_repeat 4 114 0 535 338 102 3 chr13 16883223 16883507 -102861391 + L2 LINE L2 2828 3139 -174 216 0 0 0 chr13 16883526 16883550 -102861348 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 770 191 0 0 chr13 16883550 16883676 -102861222 - AluSx SINE Alu -50 260 135 234 0 0 0 chr13 16883676 16883702 -102861196 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 39838 76 9 2 chr13 16883702 16889781 -102855117 - L1PA5 LINE L1 -11 6143 18 849 134 0 0 chr13 16889782 16889909 -102854989 - AluSx SINE Alu -178 135 9 392 255 85 9 chr13 16889934 16890040 -102854858 + L2 LINE L2 3136 3249 -23 414 299 0 0 chr13 16890911 16891018 -102853880 - Charlie8 DNA MER1_type -2142 275 169 356 286 71 48 chr13 16891074 16891242 -102853656 - MIR3 SINE MIR -17 191 20 270 0 0 0 chr13 16892381 16892411 -102852487 + (TG)n Simple_repeat Simple_repeat 2 31 0 231 123 18 35 chr13 16892448 16892505 -102852393 + LTR66 LTR ERVL 404 459 -151 188 67 33 0 chr13 16892531 16892561 -102852337 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 311 155 0 14 chr13 16892577 16892648 -102852250 + CT-rich Low_complexity Low_complexity 3 72 0 260 328 16 0 chr13 16892655 16892780 -102852118 + (TCCA)n Simple_repeat Simple_repeat 2 128 0 467 134 12 0 chr13 16892796 16892878 -102852020 + CT-rich Low_complexity Low_complexity 2 84 0 187 315 96 14 chr13 16892880 16892953 -102851945 - L2 LINE L2 -1 3271 3193 1169 232 89 17 chr13 16893086 16893388 -102851510 + MLT1J1 LTR MaLR 20 343 -103 375 311 68 114 chr13 16893737 16894175 -102850723 - L2 LINE L2 -4 3268 2851 349 265 26 30 chr13 16894350 16894482 -102850416 - MIR SINE MIR -32 176 47 228 235 0 0 chr13 16894651 16894719 -102850179 + (TG)n Simple_repeat Simple_repeat 2 69 0 276 265 0 0 chr13 16894930 16895032 -102849866 + (CA)n Simple_repeat Simple_repeat 1 102 0 288 0 0 0 chr13 16895368 16895400 -102849498 + (TG)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr13 16895402 16895423 -102849475 + (GA)n Simple_repeat Simple_repeat 2 22 0 225 94 0 0 chr13 16895835 16895867 -102849031 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 3694 106 0 6 chr13 16895947 16896458 -102848440 - MER9 LTR ERVK -3 508 1 1098 155 27 27 chr13 16897037 16897256 -102847642 + AluJo SINE Alu 86 304 -8 504 301 38 10 chr13 16897290 16897499 -102847399 + L1ME4a LINE L1 5681 5895 -226 400 288 28 34 chr13 16897567 16897744 -102847154 + L1ME4a LINE L1 5887 6062 -59 1053 179 0 72 chr13 16897791 16898014 -102846884 - AluJo SINE Alu -22 290 84 363 274 21 0 chr13 16898572 16898667 -102846231 + MER58 DNA MER1_type 171 267 -74 416 323 37 6 chr13 16898707 16898871 -102846027 + L2 LINE L2 3144 3312 -1 356 230 10 20 chr13 16899188 16899288 -102845610 + HAL1b LINE L1 84 182 -1166 327 296 9 9 chr13 16899356 16899471 -102845427 + HAL1b LINE L1 283 397 -951 4648 180 84 12 chr13 16899943 16901374 -102843524 - L1MA10 LINE L1 0 6334 4783 1679 136 6 114 chr13 16901743 16901882 -102843016 + AluSx SINE Alu 5 89 -213 1880 149 7 0 chr13 16901882 16902184 -102842714 + AluSx SINE Alu 1 304 -8 1679 136 6 114 chr13 16902184 16902376 -102842522 + AluSx SINE Alu 89 300 -2 2289 136 86 5 chr13 16903282 16903678 -102841220 + MSTA LTR MaLR 1 428 0 1232 156 6 147 chr13 16904919 16905265 -102839633 + AluSx SINE Alu 1 297 -5 1141 162 52 17 chr13 16905554 16905899 -102838999 + Tigger1 DNA MER2_type 1 2410 -8 609 293 143 43 chr13 16906494 16907010 -102837888 + L1MC4a LINE L1 4587 5154 -992 705 285 123 18 chr13 16907075 16907521 -102837377 + L1MC4a LINE L1 5449 5941 -1867 384 242 84 67 chr13 16910050 16910348 -102834550 - L1MC5 LINE L1 -175 7786 7484 211 309 41 10 chr13 16910540 16910637 -102834261 + MIR3 SINE MIR 66 165 -43 270 111 111 63 chr13 16911686 16911749 -102833149 + MIR3 SINE MIR 90 155 -53 603 229 0 0 chr13 16916321 16916491 -102828407 + (TGAA)n Simple_repeat Simple_repeat 4 173 0 * 769 185 11 0 chr13 16916454 16916632 -102828266 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 917 171 2 5 chr13 16916660 16917103 -102827795 + (TGGA)n Simple_repeat Simple_repeat 1 441 0 774 199 0 3 chr13 16917144 16917449 -102827449 + (TGGA)n Simple_repeat Simple_repeat 1 303 0 950 166 3 3 chr13 16917467 16917782 -102827116 + (TGGA)n Simple_repeat Simple_repeat 1 315 0 185 127 27 64 chr13 16918714 16918824 -102826074 + (CA)n Simple_repeat Simple_repeat 1 106 0 432 246 26 9 chr13 16922466 16922580 -102822318 - MIR SINE MIR -115 147 32 262 289 125 0 chr13 16925214 16925318 -102819580 + MER5B DNA MER1_type 54 170 -8 222 276 0 88 chr13 16925811 16926003 -102818895 + G-rich Low_complexity Low_complexity 5 179 0 581 191 0 9 chr13 16926808 16926913 -102817985 + MLT1A2 LTR MaLR 271 374 0 262 114 0 0 chr13 16927804 16927839 -102817059 - U2 snRNA snRNA -153 35 1 272 345 42 42 chr13 16927915 16928083 -102816815 - MLT1K LTR MaLR -232 356 189 757 169 0 0 chr13 16928279 16928397 -102816501 - AluJb SINE Alu -5 307 190 1283 133 21 5 chr13 16928399 16930333 -102814565 + GSATX Satellite centromeric 1 1964 -66 241 244 0 0 chr13 16931544 16931589 -102813309 + MIR SINE MIR 51 95 -167 189 74 0 0 chr13 16931590 16931617 -102813281 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 188 311 33 16 chr13 16933924 16933985 -102810913 - L2 LINE L2 -69 3203 3142 2268 116 3 0 chr13 16934039 16934340 -102810558 - AluSg SINE Alu -8 302 1 679 123 53 18 chr13 16934413 16934527 -102810371 - FLAM_C SINE Alu -9 134 17 302 267 40 10 chr13 16934754 16934855 -102810043 + L2 LINE L2 3209 3312 -1 209 287 10 59 chr13 16935296 16935397 -102809501 - L2 LINE L2 -2660 654 559 26 50 0 0 chr13 16935871 16935911 -102808987 + AT_rich Low_complexity Low_complexity 1 40 0 984 199 23 14 chr13 16935913 16936134 -102808764 + AluJo SINE Alu 83 305 -7 348 322 127 39 chr13 16936214 16936546 -102808352 + L3 LINE CR1 307 667 -910 219 164 16 33 chr13 16936932 16936993 -102807905 + (TTTAA)n Simple_repeat Simple_repeat 4 63 0 36 23 0 0 chr13 16937103 16937146 -102807752 + AT_rich Low_complexity Low_complexity 1 43 0 314 301 12 0 chr13 16937147 16937230 -102807668 - L2 LINE L2 -3 3269 3186 525 16 0 0 chr13 16937444 16937506 -102807392 + (TG)n Simple_repeat Simple_repeat 2 63 0 860 241 0 0 chr13 16937523 16937689 -102807209 + MER2 DNA MER2_type 1 166 -179 2136 109 7 13 chr13 16938812 16939114 -102805784 + AluSx SINE Alu 1 300 -12 2203 110 7 7 chr13 16939936 16940244 -102804654 - MLT2A2 LTR ERVL -145 308 1 249 128 0 0 chr13 16940989 16941036 -102803862 + (TATG)n Simple_repeat Simple_repeat 2 48 0 503 338 85 52 chr13 16942884 16943496 -102801402 + L2 LINE L2 1729 2360 -954 214 216 134 62 chr13 16943940 16944037 -102800861 - MIR SINE MIR -15 247 144 1944 201 39 31 chr13 16944041 16944583 -102800315 + MLT2A2 LTR ERVL 1 554 0 193 269 301 0 chr13 16944589 16944682 -102800216 - MIR SINE MIR -122 140 20 2464 46 0 0 chr13 16944918 16945199 -102799699 - L1PA5 LINE L1 0 6154 5874 401 261 57 51 chr13 16945330 16945487 -102799411 + MLT1G1 LTR MaLR 430 587 -8 221 182 0 45 chr13 16945560 16945626 -102799272 + GA-rich Low_complexity Low_complexity 2 64 0 423 0 0 0 chr13 16945683 16945730 -102799168 + (CA)n Simple_repeat Simple_repeat 2 48 0 233 182 18 0 chr13 16945889 16945944 -102798954 + CT-rich Low_complexity Low_complexity 2 57 0 2524 173 29 0 chr13 16946135 16946551 -102798347 - MSTA LTR MaLR 0 428 1 620 363 28 15 chr13 16947168 16947493 -102797405 - LTR16A LTR ERVL -12 438 110 23 54 0 0 chr13 16947763 16947800 -102797098 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr13 16948747 16948767 -102796131 + (TATG)n Simple_repeat Simple_repeat 2 21 0 30 0 0 0 chr13 16949392 16949422 -102795476 + AT_rich Low_complexity Low_complexity 1 30 0 617 239 222 0 chr13 16951530 16951710 -102793188 - MER58A DNA MER1_type -4 220 1 4120 115 7 7 chr13 16952042 16952606 -102792292 + LTR6A LTR ERV1 1 564 0 21 0 0 0 chr13 16953742 16953763 -102791135 + AT_rich Low_complexity Low_complexity 1 21 0 2327 81 7 0 chr13 16954479 16954776 -102790122 + AluY SINE Alu 1 299 -12 21 0 0 0 chr13 16954897 16954918 -102789980 + AT_rich Low_complexity Low_complexity 1 21 0 2016 133 7 3 chr13 16955089 16955391 -102789507 + AluSx SINE Alu 1 303 -9 361 316 105 55 chr13 16955515 16955684 -102789214 - L1M4 LINE L1 -1707 4439 4280 2143 127 0 0 chr13 16955684 16955984 -102788914 - AluSg1 SINE Alu -9 300 1 361 316 105 55 chr13 16955984 16956412 -102788486 - L1M4 LINE L1 -1866 4280 3812 398 208 75 0 chr13 16956454 16956574 -102788324 - L1MC4 LINE L1 0 8042 7914 528 279 53 4 chr13 16956628 16956890 -102788008 + L1M4 LINE L1 2890 3164 -2982 309 26 0 0 chr13 16956959 16956997 -102787901 + (CA)n Simple_repeat Simple_repeat 2 39 0 385 299 80 25 chr13 16957042 16957366 -102787532 - L1M4 LINE L1 -3267 2879 2538 * 5662 169 27 15 chr13 16957360 16957683 -102787215 - L1PB2 LINE L1 -2 6149 5832 2051 159 0 0 chr13 16957683 16957991 -102786907 - AluSq SINE Alu -5 308 1 5662 169 27 15 chr13 16957991 16959383 -102785515 - L1PB2 LINE L1 -319 5832 4413 406 146 47 19 chr13 16959385 16959605 -102785293 + (TA)n Simple_repeat Simple_repeat 1 226 0 2583 210 43 3 chr13 16959605 16960187 -102784711 - L1PB2 LINE L1 -1747 4399 3795 566 285 39 0 chr13 16960183 16960390 -102784508 - L1M4 LINE L1 -3597 2549 2335 * 426 273 35 41 chr13 16960434 16960606 -102784292 + L1MEc LINE L1 56 226 -6170 2924 194 7 4 chr13 16960734 16961296 -102783602 - L1PA12 LINE L1 -1122 5024 4461 6333 110 13 9 chr13 16961296 16962440 -102782458 + L1PA12 LINE L1 5026 6168 0 212 337 0 23 chr13 16962528 16962614 -102782284 - L2 LINE L2 -1 3271 3188 261 0 0 0 chr13 16962635 16962664 -102782234 + (TG)n Simple_repeat Simple_repeat 2 30 0 3663 201 59 82 chr13 16962723 16964317 -102780581 + L1M1 LINE L1 3142 4700 -2865 1551 137 26 26 chr13 16964333 16964604 -102780294 + AluSx SINE Alu 6 276 -36 888 157 38 22 chr13 16964604 16964789 -102780109 - MER41-int LTR ERV1 -6094 2026 1839 * 1515 177 22 4 chr13 16964788 16965059 -102779839 - MER41-int LTR ERV1 -3592 2354 2079 360 256 0 25 chr13 16966288 16966409 -102778489 + GA-rich Low_complexity Low_complexity 3 120 0 433 238 79 45 chr13 16967607 16968020 -102776878 - HSREP522 Satellite telomeric -436 426 1 1716 213 54 16 chr13 16970106 16970593 -102774305 - L1M LINE L1 -814 5332 4844 2325 70 0 0 chr13 16970593 16970877 -102774021 + AluYa5 SINE Alu 19 302 -9 207 0 0 0 chr13 16971417 16971440 -102773458 + (A)n Simple_repeat Simple_repeat 1 23 0 3448 183 19 84 chr13 16971440 16971716 -102773182 - L1 LINE L1 -1287 6278 5986 2256 114 0 0 chr13 16971716 16972024 -102772874 - AluSg SINE Alu -2 308 1 3448 183 19 84 chr13 16972024 16972682 -102772216 - L1 LINE L1 -1579 5986 5405 2087 288 64 51 chr13 16972665 16972889 -102772009 - L1 LINE L1 -5176 2389 2170 * 279 0 0 0 chr13 16972889 16972920 -102771978 + (TG)n Simple_repeat Simple_repeat 1 31 0 1965 153 0 0 chr13 16972923 16973205 -102771693 - AluSx SINE Alu -30 282 1 2087 288 64 51 chr13 16973205 16974649 -102770249 - L1 LINE L1 -5396 2169 17 * 2846 268 65 25 chr13 16974647 16975975 -102768923 - L1M4 LINE L1 -1635 4511 3130 1900 126 25 0 chr13 16975975 16976280 -102768618 - AluSx SINE Alu 0 312 1 1658 191 3 13 chr13 16977452 16977756 -102767142 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr13 16977991 16978012 -102766886 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 16978049 16978070 -102766828 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr13 16983711 16983760 -102761138 + AT_rich Low_complexity Low_complexity 1 49 0 188 67 33 0 chr13 16984683 16984713 -102760185 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 1151 136 10 40 chr13 16984713 16984911 -102759987 + AluSg/x SINE Alu 106 297 -12 261 331 54 0 chr13 16984911 16985040 -102759858 - L1ME LINE L1 -486 5635 5497 289 96 96 0 chr13 16985196 16985248 -102759650 - Charlie7 DNA MER1_type 0 2612 2556 795 162 5 136 chr13 16985257 16985448 -102759450 + FAM SINE Alu 1 40 -9 228 111 0 0 chr13 16985711 16985747 -102759151 + (TG)n Simple_repeat Simple_repeat 2 37 0 1775 151 7 7 chr13 16985748 16986033 -102758865 - AluSx SINE Alu -27 285 1 2218 104 3 0 chr13 16986189 16986486 -102758412 + AluY SINE Alu 1 298 -13 301 330 71 9 chr13 16987347 16987459 -102757439 + L2 LINE L2 3151 3269 -3 234 0 0 0 chr13 16987649 16987675 -102757223 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 812 191 0 0 chr13 16987675 16987801 -102757097 + AluSg/x SINE Alu 137 262 -50 216 0 0 0 chr13 16987801 16987825 -102757073 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 526 338 102 3 chr13 16987844 16988128 -102756770 - L2 LINE L2 -174 3139 2828 268 295 27 36 chr13 16988215 16988327 -102756571 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 1764 191 23 22 chr13 16988328 16988702 -102756196 - MLT2C1 LTR ERVL -20 444 1 301 330 71 9 chr13 16989886 16989998 -102754900 + L2 LINE L2 3151 3269 -3 453 241 54 30 chr13 16990569 16990735 -102754163 + L1ME4a LINE L1 5950 6119 -2 2011 132 0 14 chr13 16990736 16991052 -102753846 - AluSx SINE Alu 0 312 1 1992 135 10 0 chr13 16991831 16992119 -102752779 + AluSg SINE Alu 1 291 -19 8891 114 31 22 chr13 16992155 16992944 -102751954 - HSMAR1 DNA Mariner 0 1287 481 2138 128 0 0 chr13 16992944 16993241 -102751657 + AluSx SINE Alu 1 297 -15 8891 114 31 22 chr13 16993241 16993727 -102751171 - HSMAR1 DNA Mariner -806 481 1 28 61 0 0 chr13 16993861 16993910 -102750988 + AT_rich Low_complexity Low_complexity 1 49 0 2387 97 0 3 chr13 16993962 16994272 -102750626 - AluSc SINE Alu 0 309 1 1563 156 52 0 chr13 16994327 16994628 -102750270 - AluSx SINE Alu 0 315 1 860 211 12 0 chr13 16994854 16995042 -102749856 - AluSg/x SINE Alu 0 303 114 968 150 36 74 chr13 16995175 16995289 -102749609 - L1PA16 LINE L1 0 6154 6037 1629 187 3 0 chr13 16995289 16995583 -102749315 - AluJb SINE Alu -13 299 5 968 150 36 74 chr13 16995583 16995763 -102749135 - L1PA16 LINE L1 -117 6037 5806 758 143 59 0 chr13 16996135 16996254 -102748644 - AluJb SINE Alu -185 127 2 745 125 29 0 chr13 16996496 16996600 -102748298 - U6 snRNA snRNA 0 107 1 4844 213 57 29 chr13 16996630 16997857 -102747041 - Charlie1a DNA MER1_type -193 1262 1 391 272 32 38 chr13 16998156 16998314 -102746584 - HERV16 LTR ERVL -4479 517 361 239 54 27 0 chr13 16998464 16998501 -102746397 + (TA)n Simple_repeat Simple_repeat 2 39 0 630 303 56 8 chr13 16998690 16998924 -102745974 - LTR16C LTR ERVL -8 483 239 568 276 129 42 chr13 16999234 16999911 -102744987 + L1ME LINE L1 4955 5704 -460 559 274 88 0 chr13 16999969 17000178 -102744720 + MIR SINE MIR 28 255 -7 266 241 0 76 chr13 17000300 17000379 -102744519 + MIR SINE MIR 153 225 -37 855 114 8 0 chr13 17000477 17000608 -102744290 + L1P4 LINE L1 5317 5448 -715 402 255 84 60 chr13 17000623 17001412 -102743486 + HSREP522 Satellite telomeric 1 807 -123 204 182 15 61 chr13 17001817 17001883 -102743015 + (TTGGGG)n Simple_repeat Simple_repeat 2 64 0 205 177 30 79 chr13 17003216 17003667 -102741231 + (TTATA)n Simple_repeat Simple_repeat 3 158 0 302 191 48 34 chr13 17003279 17003291 -102741607 + (TA)n Simple_repeat Simple_repeat 2 12 -138 2032 125 3 0 chr13 17003291 17003579 -102741319 - AluSx SINE Alu -23 289 1 302 191 48 34 chr13 17003579 17003713 -102741185 + (TA)n Simple_repeat Simple_repeat 12 150 0 25 65 0 0 chr13 17004649 17004695 -102740203 + AT_rich Low_complexity Low_complexity 1 46 0 207 271 0 0 chr13 17004772 17004820 -102740078 - L2 LINE L2 -1 3271 3224 194 246 0 49 chr13 17005222 17005283 -102739615 - L2 LINE L2 -12 3301 3244 459 239 63 28 chr13 17005283 17005425 -102739473 - MER104 DNA Tc2 0 180 34 1804 169 0 7 chr13 17005525 17005821 -102739077 + AluJo SINE Alu 1 294 -18 452 280 168 19 chr13 17005825 17006044 -102738854 - MIR SINE MIR -11 251 4 219 282 122 53 chr13 17007726 17007857 -102737041 - MER5A DNA MER1_type 0 189 50 334 209 305 38 chr13 17007862 17007967 -102736931 + FLAM_A SINE Alu 1 133 0 21 57 0 0 chr13 17008606 17008641 -102736257 + AT_rich Low_complexity Low_complexity 1 35 0 392 275 83 21 chr13 17008867 17009102 -102735796 + MER102b DNA MER1_type 81 340 -1 21 0 0 0 chr13 17009482 17009503 -102735395 + AT_rich Low_complexity Low_complexity 1 21 0 198 266 193 28 chr13 17010165 17010274 -102734624 - L2 LINE L2 0 3272 3146 2189 115 0 0 chr13 17010973 17011260 -102733638 - AluSc SINE Alu -22 287 1 213 255 0 0 chr13 17011294 17011341 -102733557 + (TTA)n Simple_repeat Simple_repeat 2 48 0 617 158 167 0 chr13 17012196 17012310 -102732588 - FLAM_C SINE Alu 0 133 1 622 208 0 0 chr13 17013258 17013364 -102731534 + U6 snRNA snRNA 1 106 -1 191 325 91 26 chr13 17013987 17014141 -102730757 - MIR SINE MIR -42 220 57 22 0 0 0 chr13 17014628 17014650 -102730248 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr13 17014878 17014920 -102729978 + AT_rich Low_complexity Low_complexity 1 42 0 2041 195 35 16 chr13 17014920 17015346 -102729552 - Tigger2a DNA MER2_type 0 434 1 206 139 47 0 chr13 17015598 17015641 -102729257 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 847 187 0 0 chr13 17015968 17016107 -102728791 - FAM SINE Alu -25 160 22 1353 167 3 110 chr13 17016142 17016477 -102728421 - AluJb SINE Alu -13 299 1 2778 190 48 9 chr13 17016841 17017382 -102727516 - MER68 LTR ERV1 0 562 1 27 0 0 0 chr13 17017785 17017812 -102727086 + AT_rich Low_complexity Low_complexity 1 27 0 2146 119 7 10 chr13 17017935 17018245 -102726653 - AluSx SINE Alu -3 309 1 26 0 0 0 chr13 17018245 17018271 -102726627 + AT_rich Low_complexity Low_complexity 1 26 0 1918 150 17 0 chr13 17018305 17018599 -102726299 - AluSq SINE Alu -14 299 1 2645 155 0 39 chr13 17018609 17019067 -102725831 - L1MC1 LINE L1 0 6333 5894 819 128 53 0 chr13 17020071 17020204 -102724694 - Tigger7 DNA MER2_type 0 2487 2348 682 165 44 25 chr13 17020205 17020363 -102724535 + MER21A LTR ERV1 747 907 -24 584 236 0 24 chr13 17020805 17020928 -102723970 - FLAM_A SINE Alu -17 125 6 291 354 61 26 chr13 17021084 17021313 -102723585 - MIR SINE MIR -6 256 20 671 187 0 0 chr13 17024326 17024433 -102720465 + FLAM_A SINE Alu 1 107 -35 2040 125 0 39 chr13 17024686 17024991 -102719907 + AluSx SINE Alu 1 293 -19 1254 201 32 57 chr13 17025178 17025461 -102719437 - AluJb SINE Alu -24 288 13 21 89 0 0 chr13 17025557 17025613 -102719285 + AT_rich Low_complexity Low_complexity 1 56 0 6607 35 0 0 chr13 17025834 17026612 -102718286 - L1PA5 LINE L1 -1 6153 5376 1582 199 0 7 chr13 17026996 17027278 -102717620 - AluJb SINE Alu -30 282 3 1329 243 0 24 chr13 17027312 17027608 -102717290 + AluJo SINE Alu 1 289 -23 2355 94 0 0 chr13 17027802 17028100 -102716798 + AluY SINE Alu 1 298 -13 290 183 195 12 chr13 17028967 17029049 -102715849 - MER5A DNA MER1_type -83 106 10 200 196 0 0 chr13 17031224 17031270 -102713628 + (TG)n Simple_repeat Simple_repeat 1 46 0 237 306 147 12 chr13 17031673 17031843 -102713055 - Charlie1 DNA MER1_type -2563 198 6 1900 162 0 0 chr13 17032091 17032394 -102712504 - AluSx SINE Alu -4 308 6 22 56 0 0 chr13 17032506 17032542 -102712356 + AT_rich Low_complexity Low_complexity 1 36 0 1945 140 7 3 chr13 17034158 17034471 -102710427 + AluSp SINE Alu 1 314 0 1911 162 7 0 chr13 17034910 17035212 -102709686 + AluSx SINE Alu 1 304 -8 206 225 0 0 chr13 17035494 17035534 -102709364 + L2 LINE L2 3262 3301 -12 1345 251 30 0 chr13 17035755 17036054 -102708844 - AluJo SINE Alu -4 308 1 26 30 0 0 chr13 17036736 17036769 -102708129 + AT_rich Low_complexity Low_complexity 1 33 0 26 74 0 0 chr13 17037716 17037770 -102707128 + AT_rich Low_complexity Low_complexity 1 54 0 207 0 0 0 chr13 17037842 17037865 -102707033 + (A)n Simple_repeat Simple_repeat 1 23 0 607 45 23 11 chr13 17038741 17038829 -102706069 + L1PA5 LINE L1 6066 6154 0 22 35 0 0 chr13 17039761 17039790 -102705108 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr13 17040490 17040528 -102704370 + AT_rich Low_complexity Low_complexity 1 38 0 26 64 0 0 chr13 17040604 17040651 -102704247 + AT_rich Low_complexity Low_complexity 1 47 0 1957 136 0 3 chr13 17040837 17041161 -102703737 - AluSq SINE Alu 0 323 1 527 281 60 46 chr13 17041265 17041550 -102703348 + L1MB7 LINE L1 5387 5675 -2133 21 0 0 0 chr13 17041596 17041617 -102703281 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 17042543 17042566 -102702332 + AT_rich Low_complexity Low_complexity 1 23 0 5834 108 63 20 chr13 17044592 17046578 -102698320 + SVA Other Other 343 1381 -5 950 234 48 18 chr13 17047107 17047380 -102697518 + L1MB7 LINE L1 5904 6184 0 404 318 54 7 chr13 17048090 17048238 -102696660 - L2 LINE L2 -430 2884 2730 1861 215 81 26 chr13 17049310 17049803 -102695095 - L1MB8 LINE L1 -6 6172 5653 206 233 50 0 chr13 17050832 17050892 -102694006 - MIR SINE MIR -2 260 198 1466 199 7 20 chr13 17050912 17051208 -102693690 + AluJo SINE Alu 1 292 -20 2154 140 0 0 chr13 17051634 17051941 -102692957 + AluSx SINE Alu 1 307 -5 2172 118 0 3 chr13 17052291 17052587 -102692311 + AluSg SINE Alu 1 295 -15 180 232 168 42 chr13 17052923 17053018 -102691880 + L3 LINE CR1 1310 1416 -161 21 0 0 0 chr13 17053713 17053734 -102691164 + AT_rich Low_complexity Low_complexity 1 21 0 1716 133 81 3 chr13 17053734 17054019 -102690879 - AluSg SINE Alu -1 309 3 343 186 0 14 chr13 17054285 17054355 -102690543 + MER34C LTR ERV1 423 491 -94 22 35 0 0 chr13 17054360 17054389 -102690509 + AT_rich Low_complexity Low_complexity 1 29 0 2067 125 3 58 chr13 17054896 17055223 -102689675 + AluSq SINE Alu 1 309 -4 3144 113 53 0 chr13 17055613 17056082 -102688816 - L1PA10 LINE L1 -20 6148 5655 1185 234 91 25 chr13 17056178 17056542 -102688356 - MER4E LTR ERV1 -391 388 1 1241 211 68 9 chr13 17056762 17057084 -102687814 - L1MB8 LINE L1 -5 6173 5833 2110 148 78 5 chr13 17057084 17057496 -102687402 - MER61C LTR ERV1 0 434 4 2257 206 48 46 chr13 17057504 17058562 -102686336 - L1MB8 LINE L1 -342 5836 4771 702 321 77 10 chr13 17059904 17060283 -102684615 - MLT1G1 LTR MaLR -34 561 79 1220 183 73 0 chr13 17060320 17060594 -102684304 - L1MA5 LINE L1 -6 6294 6001 1015 239 31 12 chr13 17060661 17060920 -102683978 - AluJo SINE Alu -48 264 1 2997 214 27 13 chr13 17060921 17062041 -102682857 - L1MA5 LINE L1 -354 5946 4808 1469 207 14 27 chr13 17062154 17062449 -102682449 - AluJo SINE Alu -16 296 6 24 0 0 0 chr13 17063734 17063758 -102681140 + AT_rich Low_complexity Low_complexity 1 24 0 366 267 0 0 chr13 17064864 17064965 -102679933 - L1MA9 LINE L1 -49 6263 6163 638 139 0 0 chr13 17065906 17066007 -102678891 - AluSg/x SINE Alu -12 297 197 1267 105 19 43 chr13 17066107 17066317 -102678581 + AluSg/x SINE Alu 98 302 -10 1952 146 17 0 chr13 17066495 17066790 -102678108 + AluSx SINE Alu 1 300 -12 4532 172 31 18 chr13 17066826 17067955 -102676943 + L1PA16 LINE L1 5026 6165 -1 2022 135 3 0 chr13 17068114 17068402 -102676496 - AluSc SINE Alu -20 289 1 21 0 0 0 chr13 17068763 17068784 -102676114 + AT_rich Low_complexity Low_complexity 1 21 0 243 295 139 85 chr13 17069311 17069721 -102675177 + L2 LINE L2 2836 3267 -5 1192 214 231 18 chr13 17070346 17070804 -102674094 - L1MC4 LINE L1 -668 7374 6819 270 226 37 48 chr13 17071406 17071550 -102673348 - HSAT5 Satellite Satellite 0 142 1 273 238 12 18 chr13 17071818 17071914 -102672984 - HSAT5 Satellite Satellite 0 95 1 265 258 0 15 chr13 17072326 17072392 -102672506 + (CA)n Simple_repeat Simple_repeat 2 66 0 2087 108 87 44 chr13 17072619 17073055 -102671843 - SN5 Other centromeric 0 455 1 1201 253 72 3 chr13 17075137 17075442 -102669456 + MSTA LTR MaLR 1 326 -102 1217 184 21 4 chr13 17075498 17075732 -102669166 + MSTA-int LTR MaLR 13 250 -1401 * 1408 151 12 16 chr13 17075729 17075981 -102668917 + MSTA-int LTR MaLR 1401 1651 0 1321 240 26 47 chr13 17075981 17076365 -102668533 + MSTA LTR MaLR 1 376 -52 407 223 187 0 chr13 17076390 17076529 -102668369 - MST-int LTR MaLR -981 670 506 338 244 0 0 chr13 17076526 17076608 -102668290 + MSTA-int LTR MaLR 28 109 -1542 * 301 179 18 0 chr13 17076739 17076795 -102668103 + MSTA-int LTR MaLR 911 967 -613 * 838 211 198 21 chr13 17076783 17077025 -102667873 - THE1-int LTR MaLR -389 1191 907 1242 200 64 7 chr13 17077030 17077310 -102667588 + MSTA LTR MaLR 77 372 -56 521 212 167 0 chr13 17077348 17077480 -102667418 - MST-int LTR MaLR -991 660 507 5490 235 64 22 chr13 17077482 17079037 -102665861 + MSTA-int LTR MaLR 32 1651 0 372 215 0 0 chr13 17079311 17079376 -102665522 + MSTA LTR MaLR 95 159 -269 1409 215 6 41 chr13 17079383 17079727 -102665171 + MSTA-int LTR MaLR 1318 1649 -2 471 208 10 0 chr13 17079729 17079825 -102665073 + MSTA LTR MaLR 1 97 -331 249 182 36 18 chr13 17079921 17079976 -102664922 + THE1-int LTR MaLR 911 966 -614 671 234 191 26 chr13 17079978 17080209 -102664689 - THE1-int LTR MaLR -405 1175 907 1073 231 56 7 chr13 17080231 17080500 -102664398 + MSTA LTR MaLR 95 376 -52 508 240 32 26 chr13 17080517 17080671 -102664227 - THE1-int LTR MaLR -963 617 463 * 5596 216 53 47 chr13 17080666 17082212 -102662686 + MSTA-int LTR MaLR 28 1583 -68 343 159 0 48 chr13 17082284 17082347 -102662551 - MSTA LTR MaLR -52 376 317 388 158 26 0 chr13 17082349 17082425 -102662473 + MSTA-int LTR MaLR 1574 1651 0 365 263 10 0 chr13 17082425 17082524 -102662374 + MSTA LTR MaLR 1 100 -328 312 243 149 0 chr13 17082569 17082676 -102662222 + MSTA LTR MaLR 58 180 -248 1434 196 6 44 chr13 17082676 17083017 -102661881 + MSTA-int LTR MaLR 1324 1651 0 555 135 21 10 chr13 17083017 17083113 -102661785 + MSTA LTR MaLR 1 97 -331 231 236 18 0 chr13 17083198 17083253 -102661645 + THE1-int LTR MaLR 911 966 -614 686 242 186 22 chr13 17083255 17083486 -102661412 - THE1-int LTR MaLR -405 1175 907 947 267 49 8 chr13 17083513 17083779 -102661119 + MSTA LTR MaLR 98 374 -54 332 244 170 7 chr13 17083817 17083952 -102660946 - MST-int LTR MaLR -992 659 503 5923 231 53 23 chr13 17083952 17085523 -102659375 + MSTA-int LTR MaLR 34 1651 0 360 261 10 2 chr13 17085523 17085645 -102659253 + MSTA LTR MaLR 1 122 -304 354 197 28 14 chr13 17085945 17086016 -102658882 - THE1-int LTR MaLR -602 978 907 1073 231 56 7 chr13 17086038 17086307 -102658591 + MSTA LTR MaLR 95 376 -52 508 240 32 26 chr13 17086324 17086478 -102658420 - THE1-int LTR MaLR -963 617 463 * 5576 224 48 48 chr13 17086473 17088029 -102656869 + MSTA-int LTR MaLR 28 1583 -68 259 128 0 0 chr13 17088029 17088068 -102656830 + MST-int LTR MaLR 623 661 -990 341 159 0 48 chr13 17088102 17088165 -102656733 - MSTA LTR MaLR -52 376 317 352 160 40 0 chr13 17088167 17088242 -102656656 + MST-int LTR MaLR 1574 1651 0 390 253 10 0 chr13 17088242 17088341 -102656557 + MSTA LTR MaLR 1 100 -328 352 213 148 9 chr13 17088386 17088494 -102656404 + MSTA LTR MaLR 58 180 -248 1372 220 3 41 chr13 17088494 17088835 -102656063 + MSTA-int LTR MaLR 1324 1651 0 508 156 21 10 chr13 17088835 17088931 -102655967 + MSTA LTR MaLR 1 97 -331 734 206 228 21 chr13 17089064 17089297 -102655601 - THE1-int LTR MaLR -393 1187 907 994 232 62 28 chr13 17089301 17089590 -102655308 + MSTA LTR MaLR 76 374 -54 384 232 163 2 chr13 17089608 17089760 -102655138 - MST-int LTR MaLR -963 661 463 * 6106 230 56 23 chr13 17089755 17091327 -102653571 + MSTA-int LTR MaLR 28 1651 0 432 208 10 0 chr13 17091327 17091423 -102653475 + MSTA LTR MaLR 1 97 -331 460 167 23 5 chr13 17091582 17091686 -102653212 - MSTA LTR MaLR -262 113 3 1242 214 16 38 chr13 17091688 17092006 -102652892 - MSTA-int LTR MaLR 0 1651 1341 293 260 55 14 chr13 17092013 17092086 -102652812 - MSTA LTR MaLR -258 170 95 338 154 0 0 chr13 17092269 17092321 -102652577 + MSTA LTR MaLR 325 376 -52 5531 228 53 37 chr13 17092394 17093925 -102650973 - MSTA-int LTR MaLR -68 1583 28 504 237 33 26 chr13 17093920 17094072 -102650826 + THE1-int LTR MaLR 463 615 -965 * 1058 243 56 4 chr13 17094091 17094358 -102650540 - MSTA LTR MaLR -52 376 96 674 225 191 26 chr13 17094382 17094613 -102650285 + THE1-int LTR MaLR 907 1175 -405 257 164 36 18 chr13 17094615 17094670 -102650228 - THE1-int LTR MaLR -614 966 911 460 167 23 5 chr13 17094758 17094862 -102650036 - MSTA LTR MaLR -262 113 3 1240 195 25 47 chr13 17094864 17095182 -102649716 - MSTA-int LTR MaLR 0 1651 1341 258 229 41 107 chr13 17095188 17095310 -102649588 - MSTA LTR MaLR -257 171 58 471 208 10 0 chr13 17095335 17095431 -102649467 - MSTA LTR MaLR -331 97 1 538 198 27 0 chr13 17095431 17095542 -102649356 - MSTA-int LTR MaLR 0 1651 1538 207 204 46 56 chr13 17095554 17095662 -102649236 + (CCCCAA)n Simple_repeat Simple_repeat 3 109 0 385 232 11 0 chr13 17095665 17095760 -102649138 - MSTA LTR MaLR -328 100 5 6001 233 52 22 chr13 17095762 17097332 -102647566 - MSTA-int LTR MaLR 0 1651 34 317 255 152 9 chr13 17097332 17097487 -102647411 + MST-int LTR MaLR 462 661 -963 969 221 62 28 chr13 17097505 17097794 -102647104 - MSTA LTR MaLR -54 374 76 700 247 169 50 chr13 17097798 17098077 -102646821 + THE1-int LTR MaLR 907 1218 -362 282 214 18 0 chr13 17098030 17098086 -102646812 - THE1-int LTR MaLR -613 967 911 * 555 135 21 10 chr13 17098171 17098267 -102646631 - MSTA LTR MaLR -331 97 1 1352 214 3 41 chr13 17098267 17098608 -102646290 - MSTA-int LTR MaLR 0 1651 1324 355 208 160 0 chr13 17098608 17098714 -102646184 - MSTA LTR MaLR -248 180 58 997 166 6 6 chr13 17098855 17099018 -102645880 - AluSx SINE Alu -149 163 1 21 36 0 0 chr13 17099313 17099341 -102645557 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr13 17100494 17100538 -102644360 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 17100917 17100938 -102643960 + AT_rich Low_complexity Low_complexity 1 21 0 208 313 0 0 chr13 17101454 17101502 -102643396 - L2 LINE L2 -15 3257 3210 507 123 0 0 chr13 17101541 17101614 -102643284 + MADE1 DNA Mariner 3 75 -5 823 219 101 6 chr13 17102550 17102719 -102642179 - MER5A DNA MER1_type -4 185 1 226 200 100 78 chr13 17103577 17103667 -102641231 + MARNA DNA Mariner 15 106 -480 1432 222 134 43 chr13 17104009 17104710 -102640188 + LTR1B LTR ERV1 137 826 0 431 257 9 0 chr13 17104966 17105079 -102639819 - LTR43 LTR ERV1 -306 296 183 2112 110 43 3 chr13 17105670 17105970 -102638928 - AluSq SINE Alu -1 312 1 21 36 0 0 chr13 17106025 17106053 -102638845 + AT_rich Low_complexity Low_complexity 1 28 0 881 160 0 0 chr13 17106053 17106178 -102638720 - FLAM_C SINE Alu -18 125 1 306 366 0 7 chr13 17106760 17106902 -102637996 - HERV16 LTR ERVL -4335 661 521 2218 105 3 7 chr13 17106962 17107266 -102637632 - AluSp SINE Alu 0 313 11 1587 184 153 22 chr13 17107518 17107931 -102636967 - MLT1C LTR MaLR 0 467 1 572 257 161 8 chr13 17108115 17108364 -102636534 - LTR16A1 LTR ERVL -3 454 168 228 258 30 0 chr13 17109354 17109420 -102635478 - MIR SINE MIR -131 131 64 21 0 0 0 chr13 17109420 17109441 -102635457 + AT_rich Low_complexity Low_complexity 1 21 0 200 236 32 38 chr13 17110727 17110884 -102634014 + (TTATA)n Simple_repeat Simple_repeat 4 159 0 4583 194 31 28 chr13 17111733 17112621 -102632277 - MER54A LTR ERVL -1 900 10 722 164 0 0 chr13 17113452 17113568 -102631330 + AluJb SINE Alu 2 117 -195 1512 314 77 33 chr13 17113956 17115060 -102629838 + L2 LINE L2 2157 3305 -8 2208 113 0 3 chr13 17115205 17115498 -102629400 + AluSg SINE Alu 1 292 -18 7274 58 7 0 chr13 17115920 17117611 -102627287 - L1PA6 LINE L1 -5 6149 4451 3987 120 43 52 chr13 17117738 17118660 -102626238 - MER11A LTR ERVK -326 910 1 20163 103 15 8 chr13 17118661 17122961 -102621937 - L1P LINE L1 -1809 4337 13 1651 231 47 42 chr13 17123076 17123670 -102621228 + L1M4 LINE L1 4629 5225 -921 1232 125 11 0 chr13 17123670 17123854 -102621044 + AluSg/x SINE Alu 117 302 -10 419 233 35 0 chr13 17123938 17124110 -102620788 + (TA)n Simple_repeat Simple_repeat 2 179 0 182 329 12 12 chr13 17125624 17125709 -102619189 + MIR SINE MIR 116 200 -62 2041 134 10 3 chr13 17125753 17126059 -102618839 - AluJb SINE Alu -1 311 4 378 228 147 52 chr13 17126331 17126467 -102618431 + L2 LINE L2 3119 3267 -46 2166 119 0 0 chr13 17126503 17126806 -102618092 + AluSx SINE Alu 1 303 -9 286 240 80 0 chr13 17126836 17126911 -102617987 - MIR SINE MIR -70 192 112 189 0 0 0 chr13 17126945 17126966 -102617932 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1659 169 34 7 chr13 17127053 17127348 -102617550 + AluJb SINE Alu 1 303 -9 2146 114 0 3 chr13 17127660 17127959 -102616939 - AluSp SINE Alu -15 298 1 245 27 54 0 chr13 17127962 17127999 -102616899 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 279 128 85 0 chr13 17128002 17128049 -102616849 - AluJ/FRAM SINE Alu -23 279 229 28 79 0 0 chr13 17130154 17130217 -102614681 + AT_rich Low_complexity Low_complexity 1 63 0 389 20 20 0 chr13 17130394 17130444 -102614454 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 953 74 8 8 chr13 17130444 17130560 -102614338 - AluY SINE Alu -195 116 1 308 286 63 17 chr13 17134663 17134838 -102610060 - HERV16 LTR ERVL -2033 2963 2781 205 365 0 48 chr13 17135889 17136015 -102608883 + MIR SINE MIR 32 151 -57 399 249 52 55 chr13 17136267 17136556 -102608342 - L1ME3A LINE L1 -180 5990 5657 245 222 0 0 chr13 17137048 17137093 -102607805 - L1ME3A LINE L1 -501 5669 5625 448 296 29 6 chr13 17137170 17137342 -102607556 - L1MC4 LINE L1 -143 7899 7724 673 219 55 7 chr13 17137998 17138144 -102606754 - L1MC4a LINE L1 -1052 6756 6604 214 309 48 67 chr13 17138695 17138905 -102605993 - L2 LINE L2 -1857 1457 1252 699 258 6 0 chr13 17138967 17139126 -102605772 - MER5B DNA MER1_type -18 160 1 533 103 0 13 chr13 17139427 17139505 -102605393 - MADE1 DNA Mariner -3 77 1 332 333 6 51 chr13 17139997 17140153 -102604745 - MIR3 SINE MIR -5 203 55 223 308 88 33 chr13 17141547 17141729 -102603169 + L3 LINE CR1 1216 1407 -170 279 226 43 96 chr13 17142137 17142252 -102602646 + MIR SINE MIR 112 220 -42 24 53 0 0 chr13 17145922 17145960 -102598938 + AT_rich Low_complexity Low_complexity 1 38 0 1022 136 22 33 chr13 17147556 17147740 -102597158 - MER49 LTR ERV1 -27 896 715 13611 44 2 1 chr13 17148890 17151237 -102593661 + L1PA5 LINE L1 3797 6145 -9 2043 104 32 26 chr13 17152027 17152336 -102592562 + AluY SINE Alu 1 311 0 1886 148 51 46 chr13 17152849 17153221 -102591677 + THE1C LTR MaLR 2 375 0 365 215 0 0 chr13 17153221 17153286 -102591612 + THE1C-int LTR MaLR 1 65 -1515 6623 156 18 7 chr13 17153286 17154430 -102590468 + THE1C-int LTR MaLR 215 1422 -158 313 173 0 0 chr13 17155505 17155557 -102589341 + MER51D LTR ERV1 500 551 -106 1976 136 3 10 chr13 17155669 17155970 -102588928 + AluSq SINE Alu 1 299 -14 8342 101 4 1 chr13 17156534 17157602 -102587296 - MER11C LTR ERVK 0 1071 1 21 71 0 0 chr13 17157657 17157699 -102587199 + AT_rich Low_complexity Low_complexity 1 42 0 2046 138 0 0 chr13 17157801 17158092 -102586806 + AluSq SINE Alu 1 291 -22 3013 21 0 0 chr13 17158436 17158763 -102586135 - L1PA2 LINE L1 0 6155 5829 3613 30 0 5 chr13 17158763 17159192 -102585706 + L1P LINE L1 4778 5204 -942 21 0 0 0 chr13 17159307 17159328 -102585570 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 17159468 17159496 -102585402 + AT_rich Low_complexity Low_complexity 1 28 0 2395 82 0 3 chr13 17159700 17160006 -102584892 - AluY SINE Alu -6 305 1 1232 126 6 0 chr13 17161329 17161503 -102583395 + AluSx SINE Alu 1 175 -137 24 67 0 0 chr13 17161823 17161868 -102583030 + AT_rich Low_complexity Low_complexity 1 45 0 1127 152 162 0 chr13 17162497 17162695 -102582203 + MER30 DNA MER1_type 1 230 0 3703 197 43 22 chr13 17162897 17163724 -102581174 - L1PA16 LINE L1 -5 6161 5317 5342 264 51 19 chr13 17163725 17164181 -102580717 - L1 LINE L1 -864 5282 4842 198 0 0 0 chr13 17164181 17164203 -102580695 + (TG)n Simple_repeat Simple_repeat 2 23 0 5342 264 51 19 chr13 17164203 17165658 -102579240 - L1 LINE L1 -1304 4842 3310 4191 230 80 29 chr13 17165669 17165864 -102579034 + L1MA8 LINE L1 3897 4081 -2219 2133 116 3 0 chr13 17165864 17166158 -102578740 - AluY SINE Alu -16 295 1 4191 230 80 29 chr13 17166158 17167900 -102576998 + L1MA8 LINE L1 4081 5941 -359 582 209 173 4 chr13 17167911 17168136 -102576762 + L1MA8 LINE L1 6025 6287 -4 2084 136 0 0 chr13 17168879 17169166 -102575732 - AluSc SINE Alu -16 293 7 1965 156 0 7 chr13 17169859 17170166 -102574732 + AluSg SINE Alu 5 309 -1 901 162 37 11 chr13 17170800 17170991 -102573907 + L1MA3 LINE L1 6110 6305 0 377 305 145 26 chr13 17175472 17175823 -102569075 + L1MB2 LINE L1 1076 1468 -4845 1307 232 21 7 chr13 17175838 17176122 -102568776 + AluJb SINE Alu 1 288 -24 529 306 70 10 chr13 17176124 17176523 -102568375 + L1MB2 LINE L1 1318 1740 -4644 681 288 121 24 chr13 17176658 17177081 -102567817 + L1MB2 LINE L1 1963 2426 -3958 308 266 57 95 chr13 17177111 17177560 -102567338 + L1MB2 LINE L1 2445 2910 -3472 2179 112 10 0 chr13 17177560 17177865 -102567033 + AluY SINE Alu 1 308 -3 308 266 57 95 chr13 17177865 17177890 -102567008 + L1MB2 LINE L1 2910 2934 -3448 1838 156 31 0 chr13 17177890 17178179 -102566719 + AluSx SINE Alu 12 309 -3 308 266 57 95 chr13 17178179 17178454 -102566444 + L1MB2 LINE L1 2934 3137 -3245 620 264 52 18 chr13 17178457 17178786 -102566112 + L1MB2 LINE L1 4747 5086 -1296 945 267 54 43 chr13 17178789 17178812 -102566086 + L1MB2 LINE L1 5911 5932 -475 2169 108 0 7 chr13 17178812 17179108 -102565790 - AluY SINE Alu -17 294 1 945 267 54 43 chr13 17179108 17179252 -102565646 + L1MB2 LINE L1 5932 6073 -334 1882 143 17 10 chr13 17179252 17179545 -102565353 + AluSp SINE Alu 1 295 -18 945 267 54 43 chr13 17179545 17179841 -102565057 + L1MB2 LINE L1 6073 6380 -27 361 287 46 63 chr13 17180232 17180254 -102564644 + L1MB2 LINE L1 1649 1670 -5180 2294 83 0 17 chr13 17180254 17180599 -102564299 + AluY SINE Alu 1 311 0 361 287 46 63 chr13 17180599 17180750 -102564148 + L1MB2 LINE L1 1670 1819 -5031 236 262 12 12 chr13 17180810 17180894 -102564004 + L1MB2 LINE L1 2513 2596 -4253 525 259 0 9 chr13 17180901 17181017 -102563881 + FLAM_C SINE Alu 1 115 -28 2021 125 0 4 chr13 17181275 17181591 -102563307 + AluSg1 SINE Alu 3 317 0 379 268 66 36 chr13 17181605 17181967 -102562931 + L1MB2 LINE L1 2556 2928 -3922 496 185 0 0 chr13 17182051 17182132 -102562766 + AluJ/FLAM SINE Alu 4 84 -228 685 278 71 44 chr13 17182152 17182505 -102562393 + L1MB2 LINE L1 2963 3305 -3543 1927 218 36 2 chr13 17182505 17182917 -102561981 - MSTB LTR MaLR 0 426 1 685 278 71 44 chr13 17182917 17183047 -102561851 + L1MB2 LINE L1 3305 3430 -3418 1401 214 30 10 chr13 17183047 17183351 -102561547 + AluJb SINE Alu 1 310 -2 685 278 71 44 chr13 17183351 17183474 -102561424 + L1MB2 LINE L1 3430 3586 -3262 1057 276 86 20 chr13 17183604 17184439 -102560459 + L1MB2 LINE L1 5378 6266 -607 22 0 0 0 chr13 17184458 17184480 -102560418 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr13 17184526 17184566 -102560332 + AT_rich Low_complexity Low_complexity 1 40 0 324 124 66 0 chr13 17184707 17184844 -102560054 + (TA)n Simple_repeat Simple_repeat 2 147 0 204 125 62 0 chr13 17184861 17184909 -102559989 + (TA)n Simple_repeat Simple_repeat 2 52 0 1521 202 51 33 chr13 17184909 17185324 -102559574 + L1MB2 LINE L1 6375 6802 -71 1271 243 7 10 chr13 17185324 17185612 -102559286 - AluJo SINE Alu -24 288 2 1521 202 51 33 chr13 17185612 17185667 -102559231 + L1MB2 LINE L1 6802 6855 -18 1905 103 4 8 chr13 17185885 17186147 -102558751 + AluSq SINE Alu 1 261 -52 429 353 20 5 chr13 17186156 17186357 -102558541 + L1MA9 LINE L1 348 551 -5404 402 288 31 18 chr13 17186488 17186651 -102558247 + L1MA9 LINE L1 701 865 -5090 3410 232 51 17 chr13 17186656 17188774 -102556124 + L1MA9 LINE L1 3981 6175 -25 22 35 0 0 chr13 17188849 17188878 -102556020 + AT_rich Low_complexity Low_complexity 1 29 0 203 413 0 0 chr13 17189331 17189406 -102555492 - L2 LINE L2 -498 2816 2742 357 342 161 0 chr13 17190652 17190813 -102554085 - MER5A DNA MER1_type -1 188 2 429 216 92 60 chr13 17190959 17191177 -102553721 + L1MC4 LINE L1 7281 7505 -537 2247 98 0 29 chr13 17191509 17191824 -102553074 - AluSx SINE Alu -6 306 1 235 331 162 7 chr13 17192678 17192826 -102552072 - MER5A DNA MER1_type 0 189 19 252 216 18 108 chr13 17193043 17193154 -102551744 - MIR SINE MIR -9 253 153 1996 127 3 3 chr13 17193238 17193521 -102551377 - AluSp SINE Alu -30 283 1 2219 174 16 5 chr13 17195245 17195677 -102549221 - LTR56 LTR ERV1 0 445 9 1370 180 26 16 chr13 17196167 17196595 -102548303 - MER67C LTR ERV1 -1 709 218 2051 119 10 0 chr13 17197501 17197796 -102547102 + AluSx SINE Alu 1 298 -14 2153 124 3 10 chr13 17197833 17198140 -102546758 - AluSp SINE Alu -8 305 1 22 0 0 0 chr13 17198478 17198500 -102546398 + AT_rich Low_complexity Low_complexity 1 22 0 1215 49 0 19 chr13 17198500 17198662 -102546236 - L1PA4 LINE L1 -1 6154 5996 695 131 4 0 chr13 17198667 17208278 -102536620 - CER Satellite Satellite 0 9649 1 40398 56 3 2 chr13 17208301 17214453 -102530445 + L1PA4 LINE L1 9 6164 0 328 272 108 52 chr13 17214536 17214749 -102530149 + L1MDa LINE L1 1514 1738 -4802 252 300 70 19 chr13 17214797 17215007 -102529891 + L1MDa LINE L1 1657 2080 -4641 21 0 0 0 chr13 17215156 17215177 -102529721 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 17215293 17215317 -102529581 + AT_rich Low_complexity Low_complexity 1 24 0 361 233 39 23 chr13 17215571 17215700 -102529198 + L1MEc LINE L1 55 185 -6211 731 320 64 63 chr13 17215825 17216705 -102528193 + L1MEc LINE L1 351 1222 -4983 765 150 23 0 chr13 17216786 17216919 -102527979 - MSTB1 LTR MaLR -296 136 1 232 164 14 14 chr13 17218184 17218257 -102526641 + (TA)n Simple_repeat Simple_repeat 2 74 0 1391 181 87 56 chr13 17218291 17218673 -102526225 - LTR49 LTR ERV1 -168 427 30 2017 122 7 4 chr13 17218673 17218952 -102525946 + AluSq SINE Alu 14 293 -20 1391 181 87 56 chr13 17218952 17218983 -102525915 - LTR49 LTR ERV1 -565 30 1 21 57 0 0 chr13 17219376 17219411 -102525487 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr13 17219438 17219477 -102525421 + AT_rich Low_complexity Low_complexity 1 39 0 461 246 144 5 chr13 17219963 17220150 -102524748 + MER20 DNA MER1_type 4 216 -3 1775 163 58 21 chr13 17220290 17220719 -102524179 - LTR56 LTR ERV1 0 445 1 2212 187 91 11 chr13 17220903 17221453 -102523445 - LTR49 LTR ERV1 -1 594 1 31 58 0 0 chr13 17222019 17222071 -102522827 + AT_rich Low_complexity Low_complexity 1 52 0 317 263 26 20 chr13 17222228 17222380 -102522518 + (TA)n Simple_repeat Simple_repeat 1 153 0 26 0 0 0 chr13 17222495 17222521 -102522377 + AT_rich Low_complexity Low_complexity 1 26 0 14049 40 1 0 chr13 17222609 17224353 -102520545 - L1PA2 LINE L1 -1961 4185 2440 9981 31 0 2 chr13 17224353 17226320 -102518578 + L1PA2 LINE L1 4190 6155 0 22 35 0 0 chr13 17226320 17226349 -102518549 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr13 17226416 17226437 -102518461 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1367 253 46 10 chr13 17227153 17227568 -102517330 - MER54A LTR ERVL 0 901 472 2197 118 74 15 chr13 17227606 17227944 -102516954 - THE1B LTR MaLR 0 364 7 1626 214 51 2 chr13 17227953 17228346 -102516552 - MER54A LTR ERVL -489 412 1 22 0 0 0 chr13 17229520 17229542 -102515356 + AT_rich Low_complexity Low_complexity 1 22 0 1553 203 0 11 chr13 17229542 17229823 -102515075 - AluJo SINE Alu -24 288 11 1314 242 41 70 chr13 17230810 17231052 -102513846 - MLT1D LTR MaLR 0 505 257 2141 110 7 0 chr13 17231052 17231343 -102513555 - AluY SINE Alu -16 295 3 1314 242 41 70 chr13 17231343 17231616 -102513282 - MLT1D LTR MaLR -248 257 5 472 213 22 0 chr13 17231711 17231847 -102513051 + GA-rich Low_complexity Low_complexity 2 140 0 1936 234 42 75 chr13 17231853 17232451 -102512447 + MER77 LTR ERV1 22 599 -6 901 271 64 23 chr13 17233587 17234265 -102510633 - L1MEc LINE L1 -3483 2732 2046 3402 243 41 30 chr13 17234265 17235203 -102509695 + Tigger6a DNA MER2_type 2 955 -642 1704 192 3 7 chr13 17235203 17235510 -102509388 - AluJb SINE Alu -6 306 1 3402 243 41 30 chr13 17235510 17235641 -102509257 + Tigger6a DNA MER2_type 955 1083 0 901 271 64 23 chr13 17235641 17235718 -102509180 - L1MEc LINE L1 -4169 2046 1974 5252 170 8 22 chr13 17235766 17236942 -102507956 + L1PA16 LINE L1 5007 6165 -1 286 254 65 113 chr13 17236948 17237122 -102507776 - L1MEc LINE L1 -4417 1979 1798 2294 114 0 0 chr13 17237122 17237429 -102507469 - AluSg SINE Alu -3 307 1 286 254 65 113 chr13 17237429 17237510 -102507388 - L1MEc LINE L1 -4598 1798 1715 3423 29 0 17 chr13 17237510 17237930 -102506968 + L1PA4 LINE L1 5740 6152 -3 286 254 65 113 chr13 17237930 17238240 -102506658 - L1MEc LINE L1 -4681 1715 1440 330 320 77 6 chr13 17238261 17238417 -102506481 - L1MEc LINE L1 -4868 1245 1079 1032 322 67 19 chr13 17238429 17239158 -102505740 - L1MEc LINE L1 -5483 913 150 250 315 28 42 chr13 17239275 17239418 -102505480 - HAL1b LINE L1 -963 385 245 1369 209 21 78 chr13 17241156 17241543 -102503355 - MLT1A1 LTR MaLR 0 365 1 1985 140 64 3 chr13 17241677 17242020 -102502878 + THE1B LTR MaLR 1 364 0 1850 138 32 11 chr13 17242254 17242537 -102502361 - AluSg SINE Alu -21 289 1 306 338 29 43 chr13 17242641 17242780 -102502118 + MER5A DNA MER1_type 52 188 -1 1117 72 0 0 chr13 17243572 17243711 -102501187 - AluY SINE Alu -17 294 156 243 0 0 0 chr13 17244844 17244871 -102500027 + (T)n Simple_repeat Simple_repeat 1 27 0 318 303 113 21 chr13 17245888 17246126 -102498772 + MIR SINE MIR 3 262 0 2449 69 0 10 chr13 17246549 17246852 -102498046 + AluY SINE Alu 1 300 -11 196 313 15 30 chr13 17247133 17247200 -102497698 + MIR SINE MIR 182 247 -15 304 270 40 43 chr13 17247411 17247616 -102497282 + MIR SINE MIR 8 262 0 201 176 0 0 chr13 17249022 17249056 -102495842 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2136 67 0 39 chr13 17249114 17249399 -102495499 - AluY SINE Alu 0 311 38 189 0 0 0 chr13 17249986 17250007 -102494891 + (TTGG)n Simple_repeat Simple_repeat 4 24 0 1103 243 73 64 chr13 17250038 17250486 -102494412 - MLT1C LTR MaLR -5 462 3 1993 201 8 2 chr13 17250894 17251292 -102493606 + L1PA16 LINE L1 5764 6163 -3 264 178 68 27 chr13 17251298 17251371 -102493527 + L1ME4a LINE L1 5968 6043 -78 201 147 0 0 chr13 17253586 17253620 -102491278 + (CA)n Simple_repeat Simple_repeat 1 34 0 4842 95 28 0 chr13 17253897 17254398 -102490500 - L1PA13 LINE L1 -7 6156 5627 2581 107 0 27 chr13 17254398 17254772 -102490126 + THE1B LTR MaLR 1 364 0 4842 95 28 0 chr13 17254772 17254993 -102489905 - L1PA13 LINE L1 -536 5627 5414 2535 188 13 15 chr13 17255373 17256060 -102488838 - L1M4 LINE L1 -405 6277 5592 689 233 28 40 chr13 17256079 17256332 -102488566 - L1M4 LINE L1 -2191 4453 4204 5091 188 15 20 chr13 17256337 17257911 -102486987 - L1PA16 LINE L1 -5 6864 5302 * 9766 118 17 29 chr13 17257905 17259371 -102485527 + THE1B-int LTR MaLR 133 1580 0 2562 100 5 24 chr13 17259371 17259742 -102485156 + THE1B LTR MaLR 1 364 0 301 170 0 0 chr13 17259753 17259800 -102485098 + L1PA15-16 LINE L1 1112 1158 -5691 * 6378 226 19 8 chr13 17259795 17261221 -102483677 - L1PA16 LINE L1 -5592 1257 5 593 219 103 0 chr13 17261236 17261391 -102483507 - L1M4 LINE L1 -2448 4196 4026 4496 257 73 45 chr13 17261446 17264260 -102480638 - L1M4c LINE L1 -3653 2991 2 330 322 34 0 chr13 17265299 17265417 -102479481 + L2 LINE L2 3192 3313 0 249 331 24 24 chr13 17265614 17265738 -102479160 - MIR SINE MIR -110 152 29 377 314 138 57 chr13 17265870 17266348 -102478550 - MLT1F LTR MaLR -8 534 18 235 255 89 76 chr13 17266422 17266579 -102478319 + MIR SINE MIR 60 218 -44 827 319 88 0 chr13 17267341 17267661 -102477237 - L2 LINE L2 -1646 1668 1321 652 298 42 28 chr13 17267756 17268041 -102476857 + MLT1K LTR MaLR 300 588 0 364 274 61 17 chr13 17268142 17268271 -102476627 + MIR SINE MIR 37 170 -63 360 319 48 24 chr13 17268267 17268433 -102476465 - MIR SINE MIR -30 232 63 * 282 292 22 66 chr13 17268455 17268592 -102476306 - MER94 DNA DNA 0 134 4 1182 280 89 15 chr13 17268592 17268995 -102475903 - LTR16A LTR ERVL -1 449 17 2446 67 0 10 chr13 17269081 17269380 -102475518 - AluY SINE Alu -15 296 1 22 35 0 0 chr13 17269543 17269572 -102475326 + AT_rich Low_complexity Low_complexity 1 29 0 2540 185 55 6 chr13 17270188 17270680 -102474218 + MLT2B1 LTR ERVL 1 516 -4 261 0 0 0 chr13 17270840 17270869 -102474029 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 3386 96 78 166 chr13 17271876 17272630 -102472268 - LTR12 LTR ERV1 0 688 1 668 226 38 47 chr13 17272844 17273079 -102471819 - pTR5 LTR ERV1 -1463 975 743 2286 75 0 40 chr13 17273128 17273449 -102471449 + AluY SINE Alu 1 308 -3 27 49 0 0 chr13 17274725 17274766 -102470132 + AT_rich Low_complexity Low_complexity 1 41 0 201 74 0 0 chr13 17275761 17275788 -102469110 + (T)n Simple_repeat Simple_repeat 1 27 0 249 228 20 129 chr13 17275827 17275928 -102468970 + MER77 LTR ERV1 1 90 -515 2636 182 96 35 chr13 17276741 17277407 -102467491 + MER39 LTR ERV1 1 707 0 367 333 57 13 chr13 17277641 17277800 -102467098 - L2 LINE L2 -329 2984 2819 484 218 0 7 chr13 17277937 17278125 -102466773 + MER58A DNA MER1_type 1 223 -1 1469 204 14 10 chr13 17278484 17278778 -102466120 - AluJb SINE Alu -17 295 1 33 43 0 0 chr13 17279418 17279465 -102465433 + AT_rich Low_complexity Low_complexity 1 47 0 279 54 0 0 chr13 17281661 17281698 -102463200 + (TG)n Simple_repeat Simple_repeat 2 38 0 3758 191 31 22 chr13 17282320 17283892 -102461006 + L1MB1 LINE L1 4545 6123 -45 24 77 0 0 chr13 17283947 17283999 -102460899 + AT_rich Low_complexity Low_complexity 1 52 0 2556 55 0 3 chr13 17284030 17284340 -102460558 - AluY SINE Alu -2 309 1 2825 7 0 0 chr13 17284652 17284960 -102459938 - AluYa5 SINE Alu -3 308 1 21 57 0 0 chr13 17285791 17285826 -102459072 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr13 17286476 17286506 -102458392 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr13 17286623 17286661 -102458237 + AT_rich Low_complexity Low_complexity 1 38 0 1935 143 89 8 chr13 17286759 17287131 -102457767 - MSTA LTR MaLR 0 428 27 2344 154 20 0 chr13 17287156 17287553 -102457345 - MSTA-int LTR MaLR 0 1651 1247 666 149 23 17 chr13 17287660 17287834 -102457064 + CT-rich Low_complexity Low_complexity 3 177 0 252 368 40 8 chr13 17287903 17288028 -102456870 - L2 LINE L2 -2 3270 3142 4794 235 61 30 chr13 17288385 17290422 -102454476 - L1M4 LINE L1 -1346 5502 3402 355 276 94 0 chr13 17290427 17290597 -102454301 - L1M4 LINE L1 -3488 3360 3175 2441 188 4 2 chr13 17290662 17291140 -102453758 - L1MA4 LINE L1 -202 6098 5620 586 227 7 13 chr13 17291281 17291435 -102453463 + L1M4 LINE L1 6 158 -6384 9027 189 37 29 chr13 17291472 17292244 -102452654 - L1MA4 LINE L1 -735 5565 4801 2134 97 18 4 chr13 17292244 17292553 -102452345 - AluSg SINE Alu 0 313 1 9027 189 37 29 chr13 17292553 17294329 -102450569 - L1MA4 LINE L1 -1499 4801 2999 579 244 96 10 chr13 17294296 17294599 -102450299 - L1M4 LINE L1 -3687 3161 2833 * 438 271 39 0 chr13 17294711 17294866 -102450032 - L1MB4 LINE L1 0 6180 6020 555 232 60 12 chr13 17294897 17295065 -102449833 - L1M4 LINE L1 -1281 4865 4690 2512 246 71 11 chr13 17295077 17295719 -102449179 - L1MB4 LINE L1 -180 6000 5398 2070 120 0 0 chr13 17295719 17296002 -102448896 - AluSq SINE Alu -28 285 3 2512 246 71 11 chr13 17296002 17296926 -102447972 - L1MB4 LINE L1 -782 5398 4358 1029 260 14 14 chr13 17296923 17297284 -102447614 - L1MB4 LINE L1 -2413 3733 3373 * 2049 115 0 4 chr13 17297859 17298137 -102446761 - AluSq SINE Alu -28 285 9 240 184 0 0 chr13 17298267 17298316 -102446582 + (CA)n Simple_repeat Simple_repeat 1 49 0 538 257 47 65 chr13 17298316 17298530 -102446368 - MIR SINE MIR -17 245 36 251 324 27 47 chr13 17298737 17298885 -102446013 + MIR SINE MIR 117 261 -1 224 228 0 0 chr13 17298896 17298953 -102445945 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 275 195 78 0 chr13 17299036 17299113 -102445785 + L1ME4a LINE L1 6036 6118 -3 1612 210 10 16 chr13 17299155 17299469 -102445429 + AluJo SINE Alu 1 312 0 1962 143 103 137 chr13 17299511 17300104 -102444794 - LTR4 LTR ERV1 0 596 24 243 152 0 0 chr13 17301233 17301279 -102443619 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 668 261 61 0 chr13 17301370 17301535 -102443363 + MIR SINE MIR 16 190 -72 448 194 98 86 chr13 17302036 17302214 -102442684 + MLT1D LTR MaLR 6 193 -289 1268 194 0 48 chr13 17302216 17302489 -102442409 + AluJb SINE Alu 5 264 -48 387 306 99 97 chr13 17302809 17303575 -102441323 - L1M4 LINE L1 -5573 1276 509 448 300 83 106 chr13 17304022 17304955 -102439943 - L1M2 LINE L1 -5456 1393 786 1314 221 47 53 chr13 17306432 17306967 -102437931 + MER67C LTR ERV1 22 514 0 25 65 0 0 chr13 17307244 17307290 -102437608 + AT_rich Low_complexity Low_complexity 1 46 0 253 327 47 0 chr13 17307412 17307519 -102437379 - MIR SINE MIR -71 191 80 372 248 0 19 chr13 17307666 17307771 -102437127 + L1M3e LINE L1 466 568 -6921 412 350 43 12 chr13 17307836 17308090 -102436808 + L1M3e LINE L1 1414 1675 -4890 3816 260 42 15 chr13 17308289 17308854 -102436044 + L1M3e LINE L1 2007 2555 -5010 2587 11 0 0 chr13 17308854 17309136 -102435762 + AluYb8 SINE Alu 33 314 -4 3816 260 42 15 chr13 17309136 17311344 -102433554 + L1M3e LINE L1 2555 4812 -2753 1220 178 4 35 chr13 17311344 17311608 -102433290 + AluJo SINE Alu 87 343 0 291 29 0 0 chr13 17311574 17311773 -102433125 + (GAA)n Simple_repeat Simple_repeat 1 199 0 * 234 128 0 0 chr13 17311767 17311806 -102433092 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 * 4100 196 52 13 chr13 17311810 17312881 -102432017 + L1M3e LINE L1 4929 6041 -1524 7191 17 0 1 chr13 17312886 17313717 -102431181 + L1PA2 LINE L1 5326 6155 0 210 209 0 0 chr13 17315337 17315380 -102429518 - MIR SINE MIR -67 141 99 762 192 114 64 chr13 17316566 17316785 -102428113 + MER46A DNA MER2_type 7 236 0 1789 142 26 33 chr13 17316827 17317130 -102427768 + AluSx SINE Alu 3 303 -9 425 230 70 0 chr13 17318827 17318927 -102425971 + MER5A DNA MER1_type 2 108 -81 10460 43 5 37 chr13 17319121 17320640 -102424258 + SVA Other Other 1 1423 0 247 337 45 11 chr13 17323679 17323768 -102421130 - L2 LINE L2 -56 3216 3125 1571 209 6 3 chr13 17324128 17324444 -102420454 + L1MC2 LINE L1 6027 6343 -1 1920 284 60 40 chr13 17324610 17324713 -102420185 - L2 LINE L2 -784 2530 2430 538 276 74 0 chr13 17324713 17324876 -102420022 + MER96 DNA MER1_type 1 175 0 1920 284 60 40 chr13 17324876 17325543 -102419355 - L2 LINE L2 -884 2430 1745 217 140 35 18 chr13 17325543 17325600 -102419298 + GA-rich Low_complexity Low_complexity 2 59 0 28 48 0 0 chr13 17326284 17326326 -102418572 + AT_rich Low_complexity Low_complexity 1 42 0 207 0 0 0 chr13 17326447 17326470 -102418428 + (GGA)n Simple_repeat Simple_repeat 2 24 0 2239 125 0 0 chr13 17327905 17328200 -102416698 - AluSg SINE Alu -15 295 1 955 155 53 63 chr13 17328415 17328621 -102416277 + L1PA16 LINE L1 5963 6166 0 23 0 0 0 chr13 17329134 17329157 -102415741 + AT_rich Low_complexity Low_complexity 1 23 0 201 258 65 0 chr13 17329617 17329679 -102415219 - MIR3 SINE MIR -23 185 120 526 272 128 64 chr13 17330409 17330814 -102414084 + LTR33A LTR ERVL 1 431 -92 896 310 67 33 chr13 17331250 17331740 -102413158 + LTR33 LTR ERVL 3 509 -12 23 33 0 0 chr13 17333037 17333067 -102411831 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr13 17333138 17333159 -102411739 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2169 106 0 0 chr13 17333159 17333452 -102411446 - L1PA7 LINE L1 -16 6138 5846 249 304 76 11 chr13 17333734 17333826 -102411072 + L2 LINE L2 3155 3252 -20 200 232 43 0 chr13 17333895 17333964 -102410934 + (CA)n Simple_repeat Simple_repeat 1 72 0 24 53 0 0 chr13 17334006 17334044 -102410854 + AT_rich Low_complexity Low_complexity 1 38 0 1042 225 91 71 chr13 17334319 17334357 -102410541 + MLT1C LTR MaLR 6 42 -425 1684 193 5 63 chr13 17334357 17334696 -102410202 - MLT1A1 LTR MaLR 0 365 49 2061 110 35 21 chr13 17334696 17334986 -102409912 + AluSx SINE Alu 1 294 -18 1684 193 5 63 chr13 17334986 17335029 -102409869 - MLT1A1 LTR MaLR -316 49 5 1042 225 91 71 chr13 17335029 17335443 -102409455 + MLT1C LTR MaLR 42 467 0 5224 230 52 48 chr13 17335618 17337124 -102407774 - MLT1A1-int LTR MaLR -113 1538 28 483 183 148 49 chr13 17337121 17337263 -102407635 + MST-int LTR MaLR 506 661 -990 * 842 231 82 12 chr13 17337306 17337561 -102407337 - MSTA LTR MaLR -61 367 95 920 189 189 20 chr13 17337576 17337820 -102407078 + THE1-int LTR MaLR 907 1191 -389 234 232 18 0 chr13 17337808 17337864 -102407034 - THE1-int LTR MaLR -613 967 911 * 496 179 21 0 chr13 17337958 17338053 -102406845 - MSTA LTR MaLR -331 97 1 1344 208 6 43 chr13 17338053 17338400 -102406498 - MSTA-int LTR MaLR 0 1651 1318 247 250 79 13 chr13 17338407 17338483 -102406415 - MSTA LTR MaLR -273 155 75 405 215 19 37 chr13 17338526 17338633 -102406265 - MSTA LTR MaLR -323 105 1 632 164 9 0 chr13 17338633 17338749 -102406149 - MSTA-int LTR MaLR 0 1651 1535 439 219 10 0 chr13 17338946 17339042 -102405856 - MSTA LTR MaLR -331 97 1 1371 217 6 43 chr13 17339044 17339389 -102405509 - MSTA-int LTR MaLR -2 1649 1318 362 215 0 0 chr13 17339396 17339461 -102405437 - MSTA LTR MaLR -269 159 95 349 253 10 0 chr13 17339564 17339663 -102405235 - MSTA LTR MaLR -328 100 1 5894 219 50 47 chr13 17339663 17341280 -102403618 - MSTA-int LTR MaLR 0 1651 30 357 262 21 41 chr13 17341281 17341426 -102403472 + THE1-int LTR MaLR 467 608 -972 882 239 78 8 chr13 17341463 17341718 -102403180 - MSTA LTR MaLR -61 367 95 915 189 189 20 chr13 17341733 17341977 -102402921 + THE1-int LTR MaLR 907 1191 -389 234 232 18 0 chr13 17341965 17342021 -102402877 - THE1-int LTR MaLR -613 967 911 * 517 168 21 0 chr13 17342115 17342210 -102402688 - MSTA LTR MaLR -331 97 1 1376 219 3 40 chr13 17342210 17342557 -102402341 - MSTA-int LTR MaLR 0 1651 1318 279 256 24 37 chr13 17342564 17342646 -102402252 - MSTA LTR MaLR -273 155 75 431 235 20 0 chr13 17342698 17342796 -102402102 - MSTA LTR MaLR -328 100 1 5749 224 55 39 chr13 17342796 17344388 -102400510 - MSTA-int LTR MaLR 0 1651 34 268 294 37 9 chr13 17344392 17344501 -102400397 + THE1-int LTR MaLR 466 577 -1003 1018 229 67 7 chr13 17344543 17344827 -102400071 - MSTA LTR MaLR -52 376 76 747 179 191 56 chr13 17344831 17345082 -102399816 + THE1-int LTR MaLR 907 1191 -389 315 179 18 0 chr13 17345070 17345126 -102399772 - THE1-int LTR MaLR -613 967 911 * 3919 93 27 4 chr13 17345197 17345747 -102399151 + LTR6A LTR ERV1 1 563 -1 417 200 21 0 chr13 17345778 17345873 -102399025 - MSTA LTR MaLR -331 97 1 1283 203 46 40 chr13 17345873 17346198 -102398700 - MSTA-int LTR MaLR 0 1651 1325 316 256 51 13 chr13 17346198 17346276 -102398622 - MSTA LTR MaLR -252 176 96 394 224 20 10 chr13 17346349 17346447 -102398451 - MSTA LTR MaLR -329 99 1 386 244 17 0 chr13 17346447 17346562 -102398336 - MSTA-int LTR MaLR 0 1651 1535 * 4640 243 68 25 chr13 17346558 17347860 -102397038 - MSTA-int LTR MaLR -262 1389 32 474 207 164 14 chr13 17347862 17348002 -102396896 + MST-int LTR MaLR 507 667 -984 951 247 52 11 chr13 17348030 17348301 -102396597 - MSTA LTR MaLR -52 376 95 668 228 197 30 chr13 17348319 17348552 -102396346 + THE1-int LTR MaLR 907 1178 -402 263 226 19 0 chr13 17348550 17348603 -102396295 - THE1-int LTR MaLR -613 967 914 * 320 194 29 2 chr13 17348709 17348783 -102396115 - MSTA LTR MaLR -356 76 3 1235 228 33 42 chr13 17348785 17349119 -102395779 - MSTA-int LTR MaLR 0 1651 1321 492 196 21 0 chr13 17349265 17349362 -102395536 - MSTA LTR MaLR -329 99 1 4283 238 77 21 chr13 17349362 17350523 -102394375 - MSTA-int LTR MaLR 0 1651 427 749 234 8 10 chr13 17350521 17350725 -102394173 - MSTA-int LTR MaLR -1269 102 28 * 436 167 213 9 chr13 17350721 17350829 -102394069 + MST-int LTR MaLR 507 636 -1015 * 993 196 72 51 chr13 17350871 17351147 -102393751 - MSTA LTR MaLR -52 376 95 861 191 191 21 chr13 17351156 17351391 -102393507 + THE1-int LTR MaLR 904 1178 -402 258 231 19 0 chr13 17351393 17351445 -102393453 - THE1-int LTR MaLR -617 963 911 3628 113 29 4 chr13 17351516 17352065 -102392833 + LTR6A LTR ERV1 1 563 -1 438 200 21 0 chr13 17352095 17352190 -102392708 - MSTA LTR MaLR -331 97 1 1183 215 39 48 chr13 17352190 17352520 -102392378 - MSTA-int LTR MaLR 0 1651 1325 300 248 124 9 chr13 17352520 17352625 -102392273 - MSTA LTR MaLR -252 176 60 422 247 21 0 chr13 17352674 17352771 -102392127 - MSTA LTR MaLR -329 99 1 6055 229 65 19 chr13 17352771 17354321 -102390577 - MSTA-int LTR MaLR 0 1651 28 591 180 156 10 chr13 17354317 17354468 -102390430 + MST-int LTR MaLR 466 661 -963 * 919 227 81 42 chr13 17354476 17354784 -102390114 - MSTA LTR MaLR -43 385 66 725 229 196 21 chr13 17354788 17355028 -102389870 + THE1-int LTR MaLR 907 1188 -392 239 173 19 39 chr13 17355019 17355071 -102389827 - THE1-int LTR MaLR -613 967 917 * 373 226 11 0 chr13 17355177 17355270 -102389628 - MSTA LTR MaLR -334 94 1 1203 217 16 38 chr13 17355270 17355588 -102389310 - MSTA-int LTR MaLR 0 1651 1341 269 255 138 11 chr13 17355595 17355689 -102389209 - MSTA LTR MaLR -258 170 65 488 198 10 0 chr13 17355741 17355837 -102389061 - MSTA LTR MaLR -331 97 1 633 143 18 0 chr13 17355837 17355949 -102388949 - MSTA-int LTR MaLR 0 1651 1538 1024 244 48 5 chr13 17355983 17356258 -102388640 + MST-int LTR MaLR 829 1191 -544 29 28 0 0 chr13 17356577 17356613 -102388285 + AT_rich Low_complexity Low_complexity 1 36 0 2615 139 59 12 chr13 17357396 17357885 -102387013 - L1MB2 LINE L1 -2 6169 5658 1674 205 0 3 chr13 17358057 17358359 -102386539 + AluJo SINE Alu 1 301 -11 1076 94 6 17 chr13 17358372 17358552 -102386346 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1395 176 45 84 chr13 17358863 17359222 -102385676 - MLT1A1 LTR MaLR 0 365 21 2444 87 10 0 chr13 17359460 17359770 -102385128 - AluSp SINE Alu 0 313 1 2207 110 7 0 chr13 17360008 17360298 -102384600 - AluSq SINE Alu -21 292 1 393 275 18 57 chr13 17360429 17360645 -102384253 - MIR SINE MIR -53 209 1 280 248 40 50 chr13 17360904 17361005 -102383893 + MLT2E LTR ERVL 32 131 -497 770 216 55 31 chr13 17361372 17361626 -102383272 - LTR37B LTR ERV1 0 468 209 363 294 59 26 chr13 17361728 17361942 -102382956 - MIR SINE MIR -26 236 22 1575 88 0 0 chr13 17362190 17362405 -102382493 - L1PA6 LINE L1 0 6154 5940 576 222 33 39 chr13 17362842 17362951 -102381947 + MIR SINE MIR 14 123 -139 4371 117 32 32 chr13 17362951 17363642 -102381256 - LTR8 LTR ERV1 0 691 1 576 222 33 39 chr13 17363642 17363685 -102381213 + MIR SINE MIR 123 165 -97 253 319 0 0 chr13 17366120 17366192 -102378706 + MIR SINE MIR 139 210 -52 1945 193 11 6 chr13 17367184 17367547 -102377351 - MLT1A1 LTR MaLR 0 365 1 874 127 51 23 chr13 17370365 17370673 -102374225 + LTR7 LTR ERV1 1 450 0 1427 209 57 29 chr13 17371355 17371705 -102373193 + MER45B DNA AcHobo 445 804 -236 214 283 88 0 chr13 17371732 17371845 -102373053 + MIR SINE MIR 77 199 -63 363 203 0 0 chr13 17372995 17373064 -102371834 - L2 LINE L2 -3 3310 3242 297 352 31 0 chr13 17373168 17373296 -102371602 - MIR3 SINE MIR -42 166 35 459 35 0 0 chr13 17373703 17373760 -102371138 + (TC)n Simple_repeat Simple_repeat 2 58 0 492 299 56 20 chr13 17374777 17374974 -102369924 - MIR SINE MIR -12 250 47 296 294 76 5 chr13 17375301 17375499 -102369399 + MIR SINE MIR 13 228 -34 25 0 0 0 chr13 17376021 17376046 -102368852 + AT_rich Low_complexity Low_complexity 1 25 0 2503 55 0 0 chr13 17376038 17376327 -102368571 - AluY SINE Alu -22 289 1 1558 57 16 0 chr13 17376391 17376585 -102368313 - BC200 scRNA scRNA -3 197 1 461 292 134 50 chr13 17376768 17376970 -102367928 + MLT1K LTR MaLR 44 262 -326 342 80 0 0 chr13 17376993 17377043 -102367855 + (GA)n Simple_repeat Simple_repeat 1 50 0 480 18 0 0 chr13 17377043 17377100 -102367798 + (TG)n Simple_repeat Simple_repeat 1 57 0 325 216 118 10 chr13 17377889 17377991 -102366907 + HsTC2c DNA Tc2 615 727 -2 25 0 0 0 chr13 17378249 17378274 -102366624 + AT_rich Low_complexity Low_complexity 1 25 0 338 341 28 23 chr13 17379274 17379450 -102365448 + MIR3 SINE MIR 16 192 -16 777 200 36 12 chr13 17379470 17379635 -102365263 - MER45A DNA AcHobo 0 178 10 313 317 32 16 chr13 17380570 17380693 -102364205 + MIR SINE MIR 19 143 -65 2222 121 0 3 chr13 17380776 17381081 -102363817 + AluSx SINE Alu 2 305 -7 1973 119 31 10 chr13 17381111 17381405 -102363493 - AluSq SINE Alu -13 300 1 571 257 14 0 chr13 17384192 17384340 -102360558 + MIR SINE MIR 113 262 0 486 343 94 4 chr13 17384446 17384552 -102360346 + MIR SINE MIR 1 96 -166 7315 69 51 1 chr13 17384552 17385475 -102359423 + LTR5 LTR ERVK 1 969 0 486 343 94 4 chr13 17385475 17385601 -102359297 + MIR SINE MIR 96 254 -8 7602 27 1 0 chr13 17387074 17387957 -102356941 - L1PA3 LINE L1 0 6155 5272 2228 98 0 7 chr13 17390599 17390895 -102354003 - AluSg1 SINE Alu -15 294 1 288 137 0 0 chr13 17391016 17391067 -102353831 + (TG)n Simple_repeat Simple_repeat 1 51 0 37 39 0 0 chr13 17392202 17392253 -102352645 + AT_rich Low_complexity Low_complexity 1 51 0 23 78 0 0 chr13 17392822 17392873 -102352025 + AT_rich Low_complexity Low_complexity 1 51 0 1325 209 11 28 chr13 17394212 17394499 -102350399 - AluJo SINE Alu -30 282 1 1364 168 59 43 chr13 17395253 17395554 -102349344 - MSTB LTR MaLR -4 422 117 1027 156 156 0 chr13 17395554 17395656 -102349242 - MER30 DNA MER1_type 0 230 145 480 35 0 0 chr13 17395656 17395714 -102349184 + (TG)n Simple_repeat Simple_repeat 2 59 0 1027 156 156 0 chr13 17395714 17395810 -102349088 - MER30 DNA MER1_type -85 145 1 773 136 16 16 chr13 17395810 17395934 -102348964 - MSTB LTR MaLR -302 124 1 1544 275 37 5 chr13 17396579 17396986 -102347912 + MER70A LTR ERVL 4 423 -49 3288 132 20 2 chr13 17397738 17398246 -102346652 + L1PB1 LINE L1 5631 6147 -4 24 53 0 0 chr13 17399938 17399976 -102344922 + AT_rich Low_complexity Low_complexity 1 38 0 1273 191 52 42 chr13 17399976 17400264 -102344634 - AluJo SINE Alu -11 291 1 21 89 0 0 chr13 17400658 17400714 -102344184 + AT_rich Low_complexity Low_complexity 1 56 0 211 309 0 24 chr13 17401109 17401193 -102343705 - MIR SINE MIR -20 242 161 255 79 0 0 chr13 17401206 17401244 -102343654 + (CA)n Simple_repeat Simple_repeat 1 38 0 509 153 276 0 chr13 17401311 17401409 -102343489 + FLAM_C SINE Alu 2 126 -17 675 283 57 69 chr13 17401653 17402090 -102342808 - MLT1K LTR MaLR -2 586 76 262 280 150 0 chr13 17402498 17402598 -102342300 + MIR SINE MIR 36 150 -58 1537 194 182 5 chr13 17402606 17402997 -102341901 - LTR46 LTR ERV1 0 460 1 311 330 112 8 chr13 17403039 17403306 -102341592 - L2 LINE L2 -24 3289 2995 478 230 143 14 chr13 17404182 17404399 -102340499 + LTR33 LTR ERVL 277 521 0 384 330 133 0 chr13 17404688 17404906 -102339992 + MIR SINE MIR 15 261 -1 333 345 7 0 chr13 17405050 17405189 -102339709 + MIR SINE MIR 23 162 -100 1081 264 25 6 chr13 17405291 17405613 -102339285 - LTR16C LTR ERVL -29 462 135 214 260 104 21 chr13 17406004 17406100 -102338798 - MIR SINE MIR -60 148 45 598 164 0 4 chr13 17410286 17410454 -102334444 + HSAT5 Satellite Satellite 1 167 -3 305 182 34 57 chr13 17410674 17410762 -102334136 + HSAT5 Satellite Satellite 1 86 0 334 218 12 6 chr13 17410993 17411099 -102333799 + HSAT5 Satellite Satellite 1 106 -7 * 472 272 26 9 chr13 17411083 17411235 -102333663 - MSTA LTR MaLR -141 285 133 738 242 189 20 chr13 17411282 17411526 -102333372 + THE1-int LTR MaLR 907 1191 -389 270 184 21 0 chr13 17411514 17411570 -102333328 - THE1-int LTR MaLR -613 967 921 * 359 178 89 40 chr13 17411635 17411736 -102333162 - MSTA LTR MaLR -322 106 1 1113 221 92 20 chr13 17411736 17412039 -102332859 - MSTA-int LTR MaLR 0 1651 1327 377 204 126 10 chr13 17412047 17412150 -102332748 - MSTA LTR MaLR -257 171 57 457 204 20 10 chr13 17412195 17412293 -102332605 - MSTA LTR MaLR -329 99 1 6063 222 52 41 chr13 17412293 17413899 -102330999 - MSTA-int LTR MaLR 0 1651 28 387 214 150 36 chr13 17413896 17414036 -102330862 + MST-int LTR MaLR 506 661 -990 * 926 197 70 13 chr13 17414078 17414306 -102330592 - MSTA LTR MaLR -60 368 128 918 193 189 20 chr13 17414347 17414591 -102330307 + THE1-int LTR MaLR 907 1191 -389 257 214 18 0 chr13 17414579 17414635 -102330263 - THE1-int LTR MaLR -613 967 911 * 476 189 21 0 chr13 17414729 17414824 -102330074 - MSTA LTR MaLR -331 97 1 1423 204 3 43 chr13 17414824 17415172 -102329726 - MSTA-int LTR MaLR 0 1651 1318 309 226 32 0 chr13 17415179 17415241 -102329657 - MSTA LTR MaLR -269 159 96 469 214 20 0 chr13 17415317 17415415 -102329483 - MSTA LTR MaLR -328 100 1 5999 221 53 38 chr13 17415415 17417009 -102327889 - MSTA-int LTR MaLR 0 1651 34 317 266 37 9 chr13 17417013 17417122 -102327776 + THE1-int LTR MaLR 466 577 -1003 969 212 66 36 chr13 17417164 17417438 -102327460 - MSTA LTR MaLR -52 376 95 749 187 191 56 chr13 17417450 17417701 -102327197 + THE1-int LTR MaLR 907 1191 -389 315 179 18 0 chr13 17417689 17417745 -102327153 - THE1-int LTR MaLR -613 967 911 * 3764 106 29 4 chr13 17417866 17418414 -102326484 + LTR6A LTR ERV1 1 562 -2 477 157 28 46 chr13 17418433 17418541 -102326357 - MSTA LTR MaLR -322 106 1 1327 203 43 37 chr13 17418541 17418866 -102326032 - MSTA-int LTR MaLR 0 1651 1325 272 226 88 88 chr13 17418866 17418968 -102325930 - MSTA LTR MaLR -252 176 75 421 214 20 10 chr13 17419022 17419120 -102325778 - MSTA LTR MaLR -329 99 1 475 209 9 0 chr13 17419120 17419230 -102325668 - MSTA-int LTR MaLR 0 1651 1541 4892 236 67 25 chr13 17419233 17420541 -102324357 - MSTA-int LTR MaLR -263 1388 26 458 227 167 8 chr13 17420537 17420669 -102324229 + MST-int LTR MaLR 507 659 -992 * 1023 236 67 7 chr13 17420705 17420989 -102323909 - MSTA LTR MaLR -52 376 76 648 223 197 30 chr13 17420993 17421226 -102323672 + THE1-int LTR MaLR 907 1178 -402 269 228 18 0 chr13 17421224 17421281 -102323617 - THE1-int LTR MaLR -613 967 910 * 249 57 0 0 chr13 17421396 17421431 -102323467 + (CA)n Simple_repeat Simple_repeat 2 36 0 509 153 276 0 chr13 17421498 17421596 -102323302 + FLAM_C SINE Alu 2 126 -17 320 199 39 20 chr13 17421664 17421765 -102323133 - MSTA LTR MaLR -323 103 3 1209 219 40 43 chr13 17421767 17422095 -102322803 - MSTA-int LTR MaLR 0 1651 1325 237 263 50 25 chr13 17422095 17422175 -102322723 - MSTA LTR MaLR -252 176 95 497 214 19 0 chr13 17422243 17422346 -102322552 - MSTA LTR MaLR -323 105 1 4516 228 75 26 chr13 17422346 17423514 -102321384 - MSTA-int LTR MaLR 0 1651 427 742 235 8 10 chr13 17423512 17423716 -102321182 - MSTA-int LTR MaLR -1270 101 28 * 561 181 173 8 chr13 17423712 17423845 -102321053 + MST-int LTR MaLR 507 661 -990 * 893 248 52 42 chr13 17423871 17424178 -102320720 - MSTA LTR MaLR -43 385 76 408 239 11 0 chr13 17424182 17424270 -102320628 + THE1-int LTR MaLR 907 995 -585 2059 125 3 11 chr13 17424477 17424788 -102320110 - AluSp SINE Alu 0 309 1 22 0 0 0 chr13 17425126 17425148 -102319750 + AT_rich Low_complexity Low_complexity 1 22 0 1256 43 0 19 chr13 17425148 17425310 -102319588 - L1PA4 LINE L1 -1 6154 5996 965 136 82 0 chr13 17425339 17425486 -102319412 - AluSq SINE Alu -143 170 12 2149 118 10 0 chr13 17425511 17425816 -102319082 - AluY SINE Alu -3 308 1 333 281 52 37 chr13 17425817 17425952 -102318946 - L1M4 LINE L1 -3540 2842 2706 314 318 9 0 chr13 17426109 17426216 -102318682 - L1M4 LINE L1 -3773 2609 2502 579 292 163 29 chr13 17426227 17427259 -102317639 - L1M4 LINE L1 -3894 2490 1311 1212 239 21 7 chr13 17427259 17427543 -102317355 - AluJo SINE Alu -24 288 1 579 292 163 29 chr13 17427543 17427571 -102317327 - L1M4 LINE L1 -5073 1311 1288 336 316 143 24 chr13 17427573 17427909 -102316989 - L1M4 LINE L1 -4862 1451 1076 829 168 37 11 chr13 17432218 17432409 -102312489 - L1MA3 LINE L1 0 6305 6110 1934 159 0 7 chr13 17433043 17433352 -102311546 - AluSg SINE Alu -3 307 1 2054 136 0 0 chr13 17434041 17434328 -102310570 + AluSc SINE Alu 7 293 -16 548 218 173 4 chr13 17435072 17435297 -102309601 - L1MA8 LINE L1 -4 6287 6025 4062 231 80 30 chr13 17435308 17437050 -102307848 - L1MA8 LINE L1 -359 5941 4081 2121 107 3 0 chr13 17437050 17437340 -102307558 + AluY SINE Alu 1 291 -20 4062 231 80 30 chr13 17437340 17437535 -102307363 - L1MA8 LINE L1 -2219 4081 3897 5205 275 48 15 chr13 17437546 17438999 -102305899 + L1 LINE L1 3310 4842 -1304 270 0 0 0 chr13 17438999 17439029 -102305869 + (CA)n Simple_repeat Simple_repeat 2 31 0 5205 275 48 15 chr13 17439029 17439485 -102305413 + L1 LINE L1 4842 5282 -864 3733 202 35 18 chr13 17439488 17440310 -102304588 + L1PA16 LINE L1 5317 6152 -14 628 207 17 0 chr13 17440519 17440635 -102304263 - MER30 DNA MER1_type 0 230 113 646 198 17 0 chr13 17440653 17440769 -102304129 - MER30 DNA MER1_type 0 230 113 663 190 17 0 chr13 17440787 17440903 -102303995 - MER30 DNA MER1_type 0 230 113 663 190 17 0 chr13 17440921 17441037 -102303861 - MER30 DNA MER1_type 0 230 113 633 207 17 0 chr13 17441055 17441171 -102303727 - MER30 DNA MER1_type 0 230 113 646 198 17 0 chr13 17441189 17441305 -102303593 - MER30 DNA MER1_type 0 230 113 1000 160 150 0 chr13 17441323 17441523 -102303375 - MER30 DNA MER1_type 0 230 1 24 67 0 0 chr13 17442170 17442215 -102302683 + AT_rich Low_complexity Low_complexity 1 45 0 1189 105 6 0 chr13 17442535 17442697 -102302201 - AluSx SINE Alu -137 175 13 2284 81 0 3 chr13 17444035 17444333 -102300565 + AluY SINE Alu 1 297 -14 21 36 0 0 chr13 17444536 17444564 -102300334 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 17444704 17444725 -102300173 + AT_rich Low_complexity Low_complexity 1 21 0 3441 40 0 5 chr13 17444840 17445269 -102299629 - L1P LINE L1 -942 5204 4778 2805 21 0 0 chr13 17445269 17445596 -102299302 + L1PA2 LINE L1 5829 6155 0 2045 122 0 3 chr13 17445940 17446227 -102298671 - AluSx SINE Alu -22 290 5 21 71 0 0 chr13 17446333 17446375 -102298523 + AT_rich Low_complexity Low_complexity 1 42 0 7816 93 4 1 chr13 17446431 17447495 -102297403 + MER11C LTR ERVK 1 1067 -4 1950 134 3 10 chr13 17448062 17448361 -102296537 - AluSq SINE Alu -16 297 1 310 173 0 0 chr13 17448473 17448525 -102296373 - MER51D LTR ERV1 -106 551 500 6439 155 20 10 chr13 17449604 17450750 -102294148 - THE1C-int LTR MaLR -158 1422 215 359 215 0 0 chr13 17450750 17450815 -102294083 - THE1C-int LTR MaLR -1515 65 1 1706 151 48 43 chr13 17450815 17451187 -102293711 - THE1C LTR MaLR 0 375 2 2129 103 0 28 chr13 17451697 17452017 -102292881 - AluY SINE Alu 0 311 1 796 244 72 9 chr13 17452881 17453102 -102291796 + MER46A DNA MER2_type 1 235 -1 548 252 47 65 chr13 17453215 17453429 -102291469 + MIR SINE MIR 36 245 -17 240 184 0 0 chr13 17453429 17453478 -102291420 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr13 17453490 17453511 -102291387 + AT_rich Low_complexity Low_complexity 1 21 0 1601 189 0 3 chr13 17453602 17453888 -102291010 + AluSq SINE Alu 1 285 -28 643 268 54 20 chr13 17454450 17454804 -102290094 + L1 LINE L1 3360 3725 -2421 475 277 19 19 chr13 17455225 17455438 -102289460 + L1M4 LINE L1 3275 3487 -2659 1530 173 74 28 chr13 17455513 17455865 -102289033 + THE1C LTR MaLR 5 372 -3 9655 119 31 44 chr13 17455868 17457454 -102287444 + THE1C-int LTR MaLR 1 1566 -14 6079 218 25 6 chr13 17457554 17459019 -102285879 - L1 LINE L1 -2249 3897 2405 1313 77 0 0 chr13 17459019 17459189 -102285709 - AluY SINE Alu -6 305 136 634 115 19 19 chr13 17459189 17459293 -102285605 + LTR1B LTR ERV1 723 826 0 478 190 111 0 chr13 17459293 17459416 -102285482 + MER67B LTR ERV1 60 156 -358 3792 154 82 11 chr13 17459415 17460109 -102284789 - LTR1B LTR ERV1 -83 743 1 301 263 110 25 chr13 17460109 17460227 -102284671 - MER67B LTR ERV1 -502 159 32 1928 129 16 19 chr13 17460635 17460946 -102283952 - AluY SINE Alu -1 310 1 1890 161 0 0 chr13 17461301 17461600 -102283298 + AluSx SINE Alu 1 299 -13 548 331 60 40 chr13 17463679 17464078 -102280820 - LTR33 LTR ERVL -114 407 1 2035 177 36 28 chr13 17464298 17464843 -102280055 + MLT2A2 LTR ERVL 1 551 -3 997 278 163 33 chr13 17464846 17465763 -102279135 - HAL1b LINE L1 -105 1243 208 2277 38 0 0 chr13 17465896 17466159 -102278739 + AluY SINE Alu 1 263 -48 230 0 33 0 chr13 17466173 17466203 -102278695 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 233 337 127 17 chr13 17466396 17466577 -102278321 + L3 LINE CR1 327 527 -1050 30 0 0 0 chr13 17466584 17466614 -102278284 + AT_rich Low_complexity Low_complexity 1 30 0 606 370 129 23 chr13 17466822 17467594 -102277304 + L3 LINE CR1 623 1476 -101 410 319 145 0 chr13 17467733 17467899 -102276999 + MIR SINE MIR 39 228 -34 317 146 0 36 chr13 17468353 17468408 -102276490 + MER39 LTR ERV1 655 707 0 203 169 0 85 chr13 17468589 17468648 -102276250 + CT-rich Low_complexity Low_complexity 1 54 0 321 307 144 23 chr13 17468701 17468916 -102275982 - HAL1 LINE L1 0 2507 2267 238 312 8 56 chr13 17468964 17469089 -102275809 + L2 LINE L2 3195 3313 0 774 230 8 60 chr13 17469141 17469376 -102275522 - HAL1 LINE L1 -754 1753 1531 867 309 77 14 chr13 17469377 17469949 -102274949 - HAL1 LINE L1 -868 1639 1032 402 269 123 15 chr13 17469935 17470203 -102274695 - HAL1 LINE L1 -1240 1267 971 * 2054 103 0 7 chr13 17471206 17471508 -102273390 + AluY SINE Alu 1 300 0 1146 254 38 130 chr13 17471556 17472110 -102272788 + MLT1E2 LTR MaLR 1 503 -2 2000 128 0 0 chr13 17472116 17472537 -102272361 + AluSq SINE Alu 3 423 0 321 26 0 0 chr13 17474034 17474072 -102270826 + (TG)n Simple_repeat Simple_repeat 1 38 0 33 80 0 0 chr13 17475520 17475595 -102269303 + AT_rich Low_complexity Low_complexity 1 75 0 1890 121 7 11 chr13 17476684 17476965 -102267933 - AluSx SINE Alu -32 280 1 851 125 0 0 chr13 17476990 17477118 -102267780 - AluSg/x SINE Alu -5 305 178 23 0 0 0 chr13 17477552 17477575 -102267323 + AT_rich Low_complexity Low_complexity 1 23 0 2192 108 15 6 chr13 17477575 17477917 -102266981 - L1PB1 LINE L1 -3 6148 5804 2515 219 48 76 chr13 17477979 17478769 -102266129 - L1MB1 LINE L1 0 6168 5401 1767 232 37 34 chr13 17478771 17479120 -102265778 + L1M4 LINE L1 4803 5149 -997 1817 118 17 37 chr13 17479120 17479416 -102265482 - AluSc SINE Alu -14 295 6 2168 128 0 10 chr13 17479421 17479734 -102265164 - AluSx SINE Alu -2 310 1 1767 232 37 34 chr13 17479734 17479946 -102264952 + L1M4 LINE L1 5152 5372 -774 861 248 30 52 chr13 17479947 17480263 -102264635 - L1MEc LINE L1 -3649 3292 3028 2517 52 0 0 chr13 17480263 17480569 -102264329 - AluY SINE Alu -5 306 1 861 248 30 52 chr13 17480569 17480734 -102264164 - L1MEc LINE L1 -3913 3028 2861 1876 285 92 69 chr13 17480735 17481883 -102263015 - L1MEc LINE L1 -5231 1192 19 2401 60 0 3 chr13 17482281 17482581 -102262317 + AluY SINE Alu 2 300 -11 2249 195 45 10 chr13 17482653 17483145 -102261753 - LTR22 LTR ERVK 0 509 1 221 209 136 64 chr13 17483604 17483714 -102261184 - MIR SINE MIR -56 206 89 223 269 166 28 chr13 17484640 17484785 -102260113 + MIR SINE MIR 51 215 -47 2388 75 0 0 chr13 17484967 17485261 -102259637 - AluY SINE Alu -17 294 1 191 258 75 118 chr13 17485356 17485449 -102259449 - L3 LINE CR1 -50 1527 1439 3430 72 13 4 chr13 17485901 17486374 -102258524 + MER11A LTR ERVK 790 1266 0 7131 191 6 39 chr13 17486376 17487000 -102257898 - L1P LINE L1 -1226 4920 4277 1684 191 3 0 chr13 17487000 17487293 -102257605 - AluJb SINE Alu -18 294 1 7131 191 6 39 chr13 17487293 17487776 -102257122 - L1P LINE L1 -1869 4277 3876 2049 130 3 3 chr13 17487776 17488083 -102256815 - AluSc SINE Alu -2 307 1 7131 191 6 39 chr13 17488083 17488537 -102256361 - L1P LINE L1 -2270 3876 3409 513 301 57 66 chr13 17488559 17488894 -102256004 - MLT1H1 LTR MaLR -204 351 20 2411 74 0 0 chr13 17488895 17489191 -102255707 - AluY SINE Alu -15 296 1 289 219 112 17 chr13 17489198 17489376 -102255522 + L1ME LINE L1 5677 5866 -312 4199 184 11 25 chr13 17489407 17490219 -102254679 - L1MA8 LINE L1 -172 6119 5322 1932 149 10 0 chr13 17490219 17490515 -102254383 - AluSq SINE Alu -14 299 1 4199 184 11 25 chr13 17490515 17490722 -102254176 - L1MA8 LINE L1 -969 5322 5114 21 89 0 0 chr13 17491265 17491321 -102253577 + AT_rich Low_complexity Low_complexity 1 56 0 336 48 0 0 chr13 17491803 17491845 -102253053 + (CA)n Simple_repeat Simple_repeat 1 42 0 207 139 0 0 chr13 17492441 17492477 -102252421 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1823 196 52 28 chr13 17492598 17492985 -102251913 - MSTD LTR MaLR 0 396 1 327 258 0 86 chr13 17493102 17493230 -102251668 + MER5B DNA MER1_type 19 135 -43 286 325 94 49 chr13 17493495 17493698 -102251200 - MIR SINE MIR -3 259 48 2343 57 0 0 chr13 17494815 17495143 -102249755 + AluY SINE Alu 1 328 0 240 35 0 0 chr13 17495953 17495982 -102248916 + (CA)n Simple_repeat Simple_repeat 2 30 0 1724 106 4 0 chr13 17496526 17496762 -102248136 - AluSx SINE Alu -16 296 60 3183 69 7 0 chr13 17496762 17497196 -102247702 - L1PA8 LINE L1 -2 6170 5734 1726 129 7 41 chr13 17497584 17497878 -102247020 - AluSx SINE Alu -18 294 11 26 30 0 0 chr13 17498079 17498112 -102246786 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr13 17499099 17499140 -102245758 + AT_rich Low_complexity Low_complexity 1 41 0 2175 114 3 0 chr13 17499262 17499559 -102245339 + AluSq SINE Alu 1 298 -15 617 316 43 8 chr13 17499772 17500028 -102244870 - LTR16A1 LTR ERVL -20 437 173 21 0 0 0 chr13 17500778 17500799 -102244099 + AT_rich Low_complexity Low_complexity 1 21 0 273 242 0 0 chr13 17500817 17500879 -102244019 - MIR SINE MIR -14 248 187 2123 130 0 0 chr13 17501831 17502124 -102242774 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr13 17502129 17502151 -102242747 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr13 17502186 17502219 -102242679 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr13 17503234 17503264 -102241634 + (CA)n Simple_repeat Simple_repeat 1 30 0 628 294 43 7 chr13 17504095 17504371 -102240527 + L1ME4a LINE L1 5566 5851 -270 27 49 0 0 chr13 17504573 17504614 -102240284 + AT_rich Low_complexity Low_complexity 1 41 0 47 73 0 0 chr13 17505105 17505201 -102239697 + AT_rich Low_complexity Low_complexity 1 96 0 282 29 0 0 chr13 17505319 17505354 -102239544 + (GA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr13 17505806 17505829 -102239069 + AT_rich Low_complexity Low_complexity 1 23 0 225 259 0 0 chr13 17506025 17506083 -102238815 + L1MC4 LINE L1 6659 6716 -1326 1172 85 0 0 chr13 17506199 17506352 -102238546 + AluSp SINE Alu 130 282 -31 180 0 0 0 chr13 17506359 17506379 -102238519 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 2093 98 35 0 chr13 17506390 17506676 -102238222 - AluSp SINE Alu -17 296 1 875 255 90 17 chr13 17506688 17507045 -102237853 + Charlie2 DNA MER1_type 2439 2821 -41 434 335 79 32 chr13 17507513 17507955 -102236943 - L2 LINE L2 -624 2690 2228 5135 159 42 29 chr13 17509340 17511035 -102233863 + L1MA5 LINE L1 4553 6271 -29 9045 117 5 1 chr13 17511035 17512317 -102232581 - HSMAR1 DNA Mariner 0 1287 1 5135 159 42 29 chr13 17512317 17512346 -102232552 + L1MA5 LINE L1 6271 6298 -2 1049 201 34 8 chr13 17512836 17513075 -102231823 - Zaphod DNA AcHobo -8 4023 3779 219 276 102 31 chr13 17514444 17514571 -102230327 - L2 LINE L2 -1 3271 3136 36 0 0 0 chr13 17514805 17514841 -102230057 + AT_rich Low_complexity Low_complexity 1 36 0 687 266 6 0 chr13 17516605 17516778 -102228120 - FRAM SINE Alu -5 171 1 985 254 28 43 chr13 17517011 17517508 -102227390 + MLT1H1 LTR MaLR 1 595 0 186 43 0 0 chr13 17517662 17517685 -102227213 + (TC)n Simple_repeat Simple_repeat 2 24 0 225 198 66 66 chr13 17517686 17517777 -102227121 - LTR66 LTR ERVL -176 434 344 219 139 0 0 chr13 17518144 17518180 -102226718 + (CA)n Simple_repeat Simple_repeat 2 37 0 31 44 0 0 chr13 17518746 17518791 -102226107 + AT_rich Low_complexity Low_complexity 1 45 0 26 88 0 0 chr13 17519330 17519398 -102225500 + AT_rich Low_complexity Low_complexity 1 68 0 23 0 0 53 chr13 17519993 17520010 -102224888 + AT_rich Low_complexity Low_complexity 1 17 -19 2002 124 3 20 chr13 17520010 17520316 -102224582 - AluSq SINE Alu -12 301 1 23 0 0 53 chr13 17520316 17520336 -102224562 + AT_rich Low_complexity Low_complexity 17 36 0 282 341 11 0 chr13 17520874 17520962 -102223936 + L2 LINE L2 3223 3311 -2 707 244 311 28 chr13 17521047 17521436 -102223462 + L2 LINE L2 2321 2819 -495 1220 329 45 11 chr13 17521591 17522053 -102222845 + L2 LINE L2 2815 3292 -21 2189 104 3 0 chr13 17522057 17522345 -102222553 + AluSc SINE Alu 5 293 -16 2234 132 5 27 chr13 17523440 17523812 -102221086 - THE1B LTR MaLR 0 364 1 209 271 86 0 chr13 17523872 17523942 -102220956 - MIR SINE MIR 0 262 187 418 291 95 0 chr13 17524234 17524382 -102220516 - MIR SINE MIR -17 245 84 26 0 0 0 chr13 17524502 17524528 -102220370 + AT_rich Low_complexity Low_complexity 1 26 0 189 147 0 0 chr13 17526946 17526980 -102217918 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 271 43 0 43 chr13 17527065 17527112 -102217786 + (TTG)n Simple_repeat Simple_repeat 1 45 0 210 143 0 0 chr13 17527325 17527360 -102217538 + (T)n Simple_repeat Simple_repeat 1 35 0 248 172 0 16 chr13 17528903 17528967 -102215931 + (CA)n Simple_repeat Simple_repeat 2 64 0 336 24 0 0 chr13 17529026 17529067 -102215831 + (TG)n Simple_repeat Simple_repeat 2 42 0 186 118 0 0 chr13 17529855 17529889 -102215009 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2396 142 37 40 chr13 17529933 17530362 -102214536 + MSTA LTR MaLR 1 428 0 208 158 35 18 chr13 17531367 17531424 -102213474 + T-rich Low_complexity Low_complexity 2 59 0 196 325 88 6 chr13 17531492 17531625 -102213273 + MIR SINE MIR 8 145 -63 1488 208 0 0 chr13 17533841 17534115 -102210783 + AluJo SINE Alu 30 303 -9 590 86 0 0 chr13 17534118 17534199 -102210699 + MER72 LTR ERV1 642 722 0 180 352 32 48 chr13 17534609 17534734 -102210164 + MER5A DNA MER1_type 30 152 -37 257 235 47 0 chr13 17535544 17535629 -102209269 + L1MC4 LINE L1 6614 6702 -1340 1488 170 123 62 chr13 17535655 17535996 -102208902 - MLT2D LTR ERVL -48 366 5 198 71 0 0 chr13 17536545 17536573 -102208325 + (CA)n Simple_repeat Simple_repeat 1 28 0 4972 187 73 55 chr13 17537153 17538664 -102206234 - MER52A LTR ERV1 0 1755 1 2388 70 0 10 chr13 17539315 17539617 -102205281 - AluY SINE Alu -12 299 1 435 87 0 0 chr13 17539633 17539702 -102205196 + (CA)n Simple_repeat Simple_repeat 2 70 0 285 204 0 0 chr13 17539702 17539746 -102205152 - FAM SINE Alu -69 106 63 2039 116 0 3 chr13 17539872 17540156 -102204742 + AluSq SINE Alu 1 283 -30 2469 188 112 65 chr13 17540617 17540709 -102204189 + L1MA9 LINE L1 5519 5605 -707 1867 158 7 0 chr13 17540709 17541000 -102203898 + AluSx SINE Alu 1 293 -19 2469 188 112 65 chr13 17541000 17541631 -102203267 + L1MA9 LINE L1 5605 6276 -36 733 191 0 22 chr13 17541986 17542122 -102202776 + AluJo/FLAM SINE Alu 1 133 -179 360 194 0 0 chr13 17542123 17542190 -102202708 + AluJ/FRAM SINE Alu 228 294 -8 231 189 0 0 chr13 17542964 17543001 -102201897 + 5S rRNA rRNA 2 38 -83 709 259 121 17 chr13 17543006 17543444 -102201454 + L2 LINE L2 2413 2957 -357 347 309 39 34 chr13 17543465 17543747 -102201151 - MLT1J2 LTR MaLR -14 436 84 2131 109 7 0 chr13 17543935 17544218 -102200680 - AluSx SINE Alu -27 285 1 405 316 108 58 chr13 17544222 17544602 -102200296 + MLT1J2 LTR MaLR 33 431 -19 197 290 9 37 chr13 17544612 17544719 -102200179 + L2 LINE L2 3085 3188 -125 829 251 23 32 chr13 17544729 17544948 -102199950 + MER58A DNA MER1_type 2 218 -6 523 252 16 8 chr13 17544955 17545078 -102199820 + L2 LINE L2 3190 3313 0 958 233 118 76 chr13 17545095 17545580 -102199318 + MLT1D LTR MaLR 1 505 0 401 293 115 6 chr13 17546166 17546340 -102198558 + MLT1L LTR MaLR 412 604 -11 24 32 0 0 chr13 17546805 17546836 -102198062 + AT_rich Low_complexity Low_complexity 1 31 0 305 216 108 29 chr13 17547625 17547727 -102197171 + MLT1A1 LTR MaLR 20 129 -236 1188 274 62 32 chr13 17547857 17548441 -102196457 - HAL1b LINE L1 -736 612 12 447 277 19 19 chr13 17548724 17548937 -102195961 + L1MC3 LINE L1 3275 3487 -2659 1547 173 74 28 chr13 17549012 17549364 -102195534 + THE1C LTR MaLR 5 372 -3 7775 129 35 53 chr13 17549367 17550705 -102194193 + THE1C-int LTR MaLR 1 1314 -266 339 49 0 0 chr13 17550705 17550746 -102194152 - MLT2A2 LTR ERVL 0 520 480 216 0 0 0 chr13 17550747 17550771 -102194127 + (TA)n Simple_repeat Simple_repeat 2 25 0 2415 89 3 0 chr13 17550775 17551088 -102193810 - MLT2A2 LTR ERVL -139 314 1 41267 95 11 8 chr13 17551088 17556721 -102188177 - HERVL-A2-A2 LTR ERVL 0 5654 1 3156 107 16 7 chr13 17556721 17557170 -102187728 - MLT2A2 LTR ERVL 0 453 1 1702 119 15 4 chr13 17557170 17557438 -102187460 + THE1C-int LTR MaLR 1310 1580 0 1582 161 79 37 chr13 17557440 17557795 -102187103 + THE1C LTR MaLR 3 372 -3 351 0 0 0 chr13 17557795 17557834 -102187064 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 700 14 88 7 chr13 17557848 17557995 -102186903 + (TA)n Simple_repeat Simple_repeat 2 160 0 1822 229 76 19 chr13 17557995 17558427 -102186471 - MLT2B1 LTR ERVL -63 457 1 4409 186 21 10 chr13 17558469 17559295 -102185603 - ERVL-B1 LTR ERVL -235 5529 4695 1408 285 71 7 chr13 17559291 17559830 -102185068 - ERVL-B1 LTR ERVL -5084 591 5 * 1078 243 100 27 chr13 17559834 17560247 -102184651 - MLT2B1 LTR ERVL 0 464 1 4490 213 74 75 chr13 17560291 17562295 -102182603 + L1MC3 LINE L1 3530 4671 -1475 814 118 0 0 chr13 17562295 17562434 -102182464 - AluY SINE Alu 0 310 172 4490 213 74 75 chr13 17562434 17563167 -102181731 + L1MC3 LINE L1 4671 5403 -743 1362 219 19 41 chr13 17563171 17563490 -102181408 + MSTD LTR MaLR 84 395 -1 445 98 12 12 chr13 17563491 17563573 -102181325 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 2227 140 5 27 chr13 17564619 17564991 -102179907 + THE1B LTR MaLR 1 364 0 50 42 0 0 chr13 17566257 17566328 -102178570 + AT_rich Low_complexity Low_complexity 1 71 0 1301 78 0 31 chr13 17566419 17566610 -102178288 + L1PA8 LINE L1 5987 6171 -1 204 179 0 0 chr13 17566907 17566946 -102177952 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 199 93 47 0 chr13 17567562 17567605 -102177293 + (TA)n Simple_repeat Simple_repeat 1 45 0 277 322 30 10 chr13 17567646 17567756 -102177142 - MIR SINE MIR -63 145 38 21 0 0 0 chr13 17567869 17567890 -102177008 + AT_rich Low_complexity Low_complexity 1 21 0 196 359 142 0 chr13 17568952 17569058 -102175840 + MIR SINE MIR 17 137 -125 25 0 0 0 chr13 17569144 17569169 -102175729 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr13 17569228 17569257 -102175641 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 17569281 17569310 -102175588 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr13 17569635 17569663 -102175235 + (T)n Simple_repeat Simple_repeat 1 28 0 4197 189 42 9 chr13 17570131 17570193 -102174705 - L1MC2 LINE L1 -6 6338 6280 2329 87 7 0 chr13 17570193 17570492 -102174406 + AluY SINE Alu 1 301 -10 4197 189 42 9 chr13 17570492 17571325 -102173573 - L1MC2 LINE L1 -64 6280 5413 2006 105 36 0 chr13 17571334 17571639 -102173259 - L1PA16 LINE L1 -9 6157 5842 715 137 86 0 chr13 17571639 17571814 -102173084 - L1MC2 LINE L1 -743 5403 5224 2339 103 0 0 chr13 17573000 17573301 -102171597 - AluSq SINE Alu -12 301 1 941 203 17 0 chr13 17573686 17573863 -102171035 - AluSg/x SINE Alu -1 311 132 2128 133 0 9 chr13 17573863 17574178 -102170720 - AluSx SINE Alu 0 312 1 558 89 13 0 chr13 17574588 17574667 -102170231 - MADE1 DNA Mariner 0 80 1 182 357 20 31 chr13 17574883 17574981 -102169917 - L3b LINE CR1 -267 1316 1220 913 266 22 0 chr13 17576013 17576235 -102168663 + MIR SINE MIR 36 262 0 526 220 55 0 chr13 17576800 17576909 -102167989 + MIR3 SINE MIR 82 196 -12 207 200 62 113 chr13 17577159 17577239 -102167659 + L2 LINE L2 3197 3272 0 225 0 0 0 chr13 17577697 17577722 -102167176 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr13 17578196 17578217 -102166681 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 17578853 17578897 -102166001 + AT_rich Low_complexity Low_complexity 1 44 0 183 299 75 47 chr13 17579825 17579932 -102164966 + L2 LINE L2 3197 3306 -7 226 338 203 23 chr13 17580265 17580398 -102164500 - MIR3 SINE MIR -6 202 46 32 0 0 0 chr13 17580817 17580849 -102164049 + AT_rich Low_complexity Low_complexity 1 32 0 1203 242 168 66 chr13 17582128 17582615 -102162283 - MLT1F LTR MaLR 0 542 6 258 32 0 0 chr13 17583192 17583223 -102161675 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 531 31 0 0 chr13 17583222 17583287 -102161611 + (GA)n Simple_repeat Simple_repeat 2 66 0 428 261 27 9 chr13 17583289 17583400 -102161498 + MER5B DNA MER1_type 63 175 -3 11645 196 11 79 chr13 17583639 17585876 -102159022 + L1 LINE L1 2286 4435 -1711 1136 157 0 0 chr13 17585876 17586054 -102158844 + AluSp SINE Alu 136 313 0 11645 196 11 79 chr13 17586054 17586789 -102158109 + L1 LINE L1 4435 5219 -927 470 127 7 72 chr13 17586790 17587086 -102157812 + (CCCTAA)n Simple_repeat Simple_repeat 1 276 0 2908 155 2 14 chr13 17587230 17587747 -102157151 - TAR1 Satellite telomeric -43 2068 1558 387 275 33 0 chr13 17589010 17589130 -102155768 + MIR SINE MIR 84 207 -55 692 270 0 27 chr13 17589138 17589323 -102155575 - MIR SINE MIR -6 256 77 236 30 30 0 chr13 17589339 17589372 -102155526 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 222 226 19 0 chr13 17590045 17590098 -102154800 - L3b LINE CR1 -195 1388 1335 520 285 40 7 chr13 17590349 17590500 -102154398 - MIR3 SINE MIR -34 174 19 353 286 29 21 chr13 17590757 17590897 -102154001 - MIR SINE MIR -87 175 35 214 208 0 21 chr13 17591154 17591202 -102153696 + MIR SINE MIR 206 252 -10 270 284 51 60 chr13 17591852 17591952 -102152946 + MIR3 SINE MIR 79 178 -30 573 246 221 5 chr13 17592492 17592691 -102152207 - MIR SINE MIR -7 255 14 387 292 30 46 chr13 17592977 17593117 -102151781 - MIR SINE MIR -48 160 28 2335 92 0 3 chr13 17593120 17593423 -102151475 - AluSg SINE Alu -8 302 1 225 274 113 28 chr13 17594100 17594206 -102150692 + L2 LINE L2 3158 3272 0 550 314 41 18 chr13 17594508 17594728 -102150170 + MIR SINE MIR 2 226 -36 1204 139 34 29 chr13 17594850 17595058 -102149840 - AluJo SINE Alu -98 214 6 328 78 0 112 chr13 17595480 17595659 -102149239 + (TGGGGG)n Simple_repeat Simple_repeat 2 160 0 639 241 99 0 chr13 17596359 17596500 -102148398 + FRAM SINE Alu 1 155 -21 2076 122 0 3 chr13 17596502 17596796 -102148102 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr13 17597072 17597094 -102147804 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 17597169 17597193 -102147705 + AT_rich Low_complexity Low_complexity 1 24 0 745 324 109 30 chr13 17597320 17597795 -102147103 + L1MDb LINE L1 104 616 -5793 259 231 122 39 chr13 17597802 17597958 -102146940 + L1MDb LINE L1 454 622 -5787 321 322 71 33 chr13 17597975 17598186 -102146712 + L1MDb LINE L1 408 626 -5783 304 298 166 47 chr13 17598353 17598588 -102146310 + L1M2 LINE L1 982 1244 -5605 543 271 55 52 chr13 17599630 17600013 -102144885 - HSREP522 Satellite telomeric 0 504 121 229 310 17 35 chr13 17601248 17601422 -102143476 + GA-rich Low_complexity Low_complexity 5 175 0 334 183 0 14 chr13 17602195 17602266 -102142632 - L1 LINE L1 -3308 2838 2769 219 36 0 0 chr13 17602273 17602301 -102142597 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1721 142 32 4 chr13 17602301 17602577 -102142321 - AluSx SINE Alu -27 285 2 2254 218 14 10 chr13 17602577 17603072 -102141826 - L1 LINE L1 -2203 3943 3447 1675 243 16 0 chr13 17603074 17603445 -102141453 - MSTB LTR MaLR -49 377 1 3237 204 21 3 chr13 17603445 17604066 -102140832 - MSTB-int LTR MaLR 0 1651 1020 4568 273 37 26 chr13 17604068 17605637 -102139261 - L1P LINE L1 -2696 3450 1860 2045 142 0 0 chr13 17605637 17605932 -102138966 + AluSx SINE Alu 1 295 -17 4568 273 37 26 chr13 17605932 17606057 -102138841 - L1P LINE L1 -4286 1860 1738 5597 132 46 42 chr13 17606070 17608768 -102136130 + SVA Other Other 432 1384 -2 351 0 0 0 chr13 17608797 17608836 -102136062 + (TG)n Simple_repeat Simple_repeat 2 40 0 309 317 63 7 chr13 17610219 17610361 -102134537 + L2 LINE L2 2722 2871 -443 277 289 0 0 chr13 17611167 17611257 -102133641 - L1MC4 LINE L1 -1339 6703 6614 22 56 0 0 chr13 17614149 17614185 -102130713 + AT_rich Low_complexity Low_complexity 1 36 0 368 294 88 23 chr13 17614331 17614637 -102130261 + L1ME4a LINE L1 5518 5843 -278 338 282 86 0 chr13 17615106 17615223 -102129675 - L2 LINE L2 0 3313 3187 931 334 84 36 chr13 17615437 17616126 -102128772 + L1MEc LINE L1 40 761 -5635 248 231 58 70 chr13 17616094 17616250 -102128648 + L1MEc LINE L1 973 1126 -5270 * 1338 224 41 94 chr13 17616403 17616644 -102128254 + L1MEc LINE L1 1944 2196 -4019 282 56 0 0 chr13 17616644 17616680 -102128218 + (TA)n Simple_repeat Simple_repeat 1 36 0 1338 224 41 94 chr13 17616680 17617273 -102127625 + L1MEc LINE L1 2196 2691 -3524 842 279 55 40 chr13 17617290 17617688 -102127210 + L1MEc LINE L1 2791 3194 -3021 1413 244 20 11 chr13 17617701 17618058 -102126840 + MLT1A1 LTR MaLR 6 365 0 339 294 71 20 chr13 17618075 17618327 -102126571 + L1MEc LINE L1 3230 3494 -2721 4195 79 8 11 chr13 17618328 17619300 -102125598 + L1P2 LINE L1 4851 5816 -338 276 306 25 19 chr13 17619535 17619692 -102125206 + L1ME3A LINE L1 5770 5927 -243 180 0 0 0 chr13 17619890 17619910 -102124988 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1099 58 0 0 chr13 17619914 17620052 -102124846 - AluY SINE Alu -13 298 161 395 165 12 0 chr13 17620084 17620169 -102124729 + (CA)n Simple_repeat Simple_repeat 1 86 0 24 85 0 0 chr13 17621575 17621634 -102123264 + AT_rich Low_complexity Low_complexity 1 59 0 353 221 307 21 chr13 17622326 17622466 -102122432 + MER5A DNA MER1_type 9 188 -1 1698 164 43 16 chr13 17623160 17623464 -102121434 - AluSx SINE Alu 0 312 1 23 33 0 0 chr13 17623466 17623496 -102121402 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 17624021 17624049 -102120849 + AT_rich Low_complexity Low_complexity 1 28 0 182 300 114 29 chr13 17624243 17624313 -102120585 - L2 LINE L2 -29 3243 3168 * 225 330 66 9 chr13 17624305 17624411 -102120487 + L2 LINE L2 2946 3057 -256 263 306 82 41 chr13 17624858 17625054 -102119844 - MIR SINE MIR -50 212 9 1937 101 0 4 chr13 17625681 17625939 -102118959 - AluY SINE Alu -5 306 50 217 363 61 52 chr13 17626861 17627189 -102117709 - L2 LINE L2 -339 2975 2645 21 57 0 0 chr13 17627727 17627762 -102117136 + AT_rich Low_complexity Low_complexity 1 35 0 725 249 61 0 chr13 17628909 17629106 -102115792 - L1MA4 LINE L1 -4 6296 6088 24 0 0 0 chr13 17629192 17629216 -102115682 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 17629464 17629487 -102115411 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr13 17630052 17630086 -102114812 + AT_rich Low_complexity Low_complexity 1 34 0 1738 68 0 5 chr13 17630256 17630475 -102114423 + AluY SINE Alu 84 301 -10 1794 148 34 3 chr13 17630485 17630783 -102114115 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr13 17630796 17630821 -102114077 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 17630951 17630979 -102113919 + AT_rich Low_complexity Low_complexity 1 28 0 633 202 9 0 chr13 17631513 17631627 -102113271 - FLAM_A SINE Alu -15 118 4 2302 60 10 3 chr13 17632504 17632802 -102112096 - AluY SINE Alu -11 300 1 219 198 8 83 chr13 17634557 17634678 -102110220 + A-rich Low_complexity Low_complexity 5 116 0 401 378 5 15 chr13 17635142 17635338 -102109560 + MIR SINE MIR 63 256 -6 419 162 95 0 chr13 17635485 17635559 -102109339 + AluSp SINE Alu 117 197 -106 560 161 25 8 chr13 17685560 17685678 -102059220 + L1PA16 LINE L1 6044 6163 -3 264 187 67 27 chr13 17685682 17685757 -102059141 + L1ME4a LINE L1 5966 6043 -78 201 147 0 0 chr13 17687972 17688006 -102056892 + (CA)n Simple_repeat Simple_repeat 1 34 0 4837 95 28 0 chr13 17688283 17688784 -102056114 - L1PA13 LINE L1 -7 6156 5627 2561 107 0 27 chr13 17688784 17689158 -102055740 + THE1B LTR MaLR 1 364 0 4837 95 28 0 chr13 17689158 17689379 -102055519 - L1PA13 LINE L1 -536 5627 5414 2214 190 29 16 chr13 17689759 17690436 -102054462 - L1M4 LINE L1 -405 6277 5592 709 233 28 40 chr13 17690455 17690708 -102054190 - L1M4 LINE L1 -2191 4453 4204 5117 188 15 20 chr13 17690713 17692287 -102052611 - L1PA16 LINE L1 -5 6864 5302 * 9698 118 17 29 chr13 17692281 17693747 -102051151 + THE1B-int LTR MaLR 133 1580 0 2539 100 5 24 chr13 17693747 17694118 -102050780 + THE1B LTR MaLR 1 364 0 263 231 22 88 chr13 17694129 17694220 -102050678 + L1PA15-16 LINE L1 1112 1196 -5653 * 6298 226 19 8 chr13 17694171 17695597 -102049301 - L1PA16 LINE L1 -5592 1257 5 603 219 103 0 chr13 17695612 17695767 -102049131 - L1M4 LINE L1 -2448 4196 4026 4601 257 74 45 chr13 17695822 17698635 -102046263 - L1M4c LINE L1 -3653 2991 2 278 317 33 17 chr13 17699674 17699794 -102045104 + L2 LINE L2 3192 3313 0 21 89 0 0 chr13 17699878 17699934 -102044964 + AT_rich Low_complexity Low_complexity 1 56 0 262 331 24 24 chr13 17699991 17700115 -102044783 - MIR SINE MIR -110 152 29 346 320 138 57 chr13 17700247 17700725 -102044173 - MLT1F LTR MaLR -8 534 18 238 255 89 76 chr13 17700799 17700956 -102043942 + MIR SINE MIR 60 218 -44 827 319 88 0 chr13 17701719 17702039 -102042859 - L2 LINE L2 -1646 1668 1321 656 302 32 29 chr13 17702134 17702412 -102042486 + MLT1K LTR MaLR 300 578 -10 366 274 61 17 chr13 17702520 17702649 -102042249 + MIR SINE MIR 37 170 -63 363 319 48 24 chr13 17702645 17702811 -102042087 - MIR SINE MIR -30 232 63 * 268 297 22 72 chr13 17702833 17702971 -102041927 - MER94 DNA DNA 0 134 4 1140 282 96 14 chr13 17702971 17703386 -102041512 - LTR16A LTR ERVL -1 449 1 2366 64 0 13 chr13 17703460 17703758 -102041140 - AluY SINE Alu -17 294 1 22 35 0 0 chr13 17703921 17703950 -102040948 + AT_rich Low_complexity Low_complexity 1 29 0 2545 183 55 6 chr13 17704566 17705058 -102039840 + MLT2B1 LTR ERVL 1 516 -4 225 0 0 0 chr13 17705218 17705243 -102039655 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 3348 94 78 166 chr13 17706251 17707005 -102037893 - LTR12 LTR ERV1 0 688 1 709 213 38 47 chr13 17707219 17707454 -102037444 - pTR5 LTR ERV1 -1463 975 743 2290 68 0 40 chr13 17707503 17707825 -102037073 + AluY SINE Alu 1 309 -2 229 152 22 0 chr13 17710151 17710197 -102034701 - HAL1 LINE L1 -134 2373 2327 257 209 22 143 chr13 17710207 17710298 -102034600 + MER77 LTR ERV1 11 90 -515 2629 174 99 36 chr13 17711111 17711776 -102033122 + MER39 LTR ERV1 1 707 0 366 333 57 13 chr13 17712010 17712169 -102032729 - L2 LINE L2 -329 2984 2819 497 223 0 7 chr13 17712306 17712494 -102032404 + MER58A DNA MER1_type 1 223 -1 1443 201 14 10 chr13 17712853 17713146 -102031752 - AluJb SINE Alu -16 296 3 33 43 0 0 chr13 17713788 17713835 -102031063 + AT_rich Low_complexity Low_complexity 1 47 0 312 27 0 0 chr13 17716034 17716071 -102028827 + (TG)n Simple_repeat Simple_repeat 2 38 0 4083 190 33 21 chr13 17716694 17718263 -102026635 + L1MB1 LINE L1 4545 6123 -45 24 77 0 0 chr13 17718318 17718370 -102026528 + AT_rich Low_complexity Low_complexity 1 52 0 2484 61 0 3 chr13 17718397 17718707 -102026191 - AluY SINE Alu -2 309 1 2778 13 0 0 chr13 17719018 17719328 -102025570 - AluYa5 SINE Alu -1 310 1 27 49 0 0 chr13 17720153 17720194 -102024704 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr13 17720844 17720874 -102024024 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr13 17720991 17721029 -102023869 + AT_rich Low_complexity Low_complexity 1 38 0 2039 145 89 8 chr13 17721127 17721499 -102023399 - MSTA LTR MaLR 0 428 27 2469 156 20 0 chr13 17721524 17721921 -102022977 - MSTA-int LTR MaLR 0 1651 1247 594 202 17 6 chr13 17721997 17722170 -102022728 + CT-rich Low_complexity Low_complexity 3 177 0 247 368 40 8 chr13 17722258 17722383 -102022515 - L2 LINE L2 -2 3270 3142 311 0 26 0 chr13 17722735 17722774 -102022124 + (TA)n Simple_repeat Simple_repeat 1 40 0 5438 239 62 26 chr13 17722775 17724794 -102020104 - L1M4 LINE L1 -1355 4791 2700 395 276 94 0 chr13 17724799 17724969 -102019929 - L1M4 LINE L1 -3488 2658 2473 2665 184 4 2 chr13 17725027 17725512 -102019386 - L1MA4 LINE L1 -195 6105 5620 658 221 7 13 chr13 17725653 17725807 -102019091 + L1M4 LINE L1 6 158 -6384 9714 198 43 26 chr13 17725842 17726616 -102018282 - L1MA4 LINE L1 -738 5567 4807 2076 101 18 4 chr13 17726616 17726917 -102017981 - AluSg SINE Alu 0 305 1 9714 198 43 26 chr13 17726917 17728957 -102015941 - L1MA4 LINE L1 -1498 4807 2131 502 271 54 0 chr13 17729070 17729236 -102015662 - L1MB4 LINE L1 0 6180 6006 592 238 60 12 chr13 17729256 17729424 -102015474 - L1M4 LINE L1 -1281 4865 4690 2787 247 71 10 chr13 17729436 17730080 -102014818 - L1MB4 LINE L1 -180 6000 5396 2013 121 0 0 chr13 17730080 17730360 -102014538 - AluSq SINE Alu -31 282 3 2787 247 71 10 chr13 17730360 17731284 -102013614 - L1MB4 LINE L1 -784 5396 4352 856 247 19 3 chr13 17731274 17731537 -102013361 - L1MB4 LINE L1 -2413 3733 3471 * 1613 186 25 74 chr13 17931664 17931830 -101813068 + MLT1A2 LTR MaLR 1 173 -201 2090 129 10 3 chr13 17931830 17932125 -101812773 + AluSx SINE Alu 1 297 -15 1613 186 25 74 chr13 17932125 17932322 -101812576 + MLT1A2 LTR MaLR 173 346 -28 278 25 0 25 chr13 17932322 17932362 -101812536 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1613 186 25 74 chr13 17932362 17932390 -101812508 + MLT1A2 LTR MaLR 346 374 0 1860 151 6 28 chr13 17932396 17932715 -101812183 - AluJo SINE Alu 0 312 1 332 329 70 35 chr13 17932723 17932951 -101811947 - L1M4 LINE L1 -3568 2578 2343 939 288 22 38 chr13 17933004 17933320 -101811578 - LTR16A LTR ERVL -32 418 108 22 0 0 0 chr13 17933480 17933502 -101811396 + AT_rich Low_complexity Low_complexity 1 22 0 2153 115 3 0 chr13 17933634 17933922 -101810976 - AluSg SINE Alu -21 289 1 2310 115 0 0 chr13 17934219 17934531 -101810367 - AluSx SINE Alu 0 312 1 2001 137 3 10 chr13 17934595 17934901 -101809997 - AluSx SINE Alu -8 304 1 946 164 55 6 chr13 17934904 17935027 -101809871 - L1M3 LINE L1 -560 5611 5475 207 0 0 0 chr13 17935027 17935050 -101809848 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 946 164 55 6 chr13 17935050 17935109 -101809789 - L1M3 LINE L1 -696 5475 5420 725 179 17 0 chr13 17935109 17935226 -101809672 - AluSg/x SINE Alu -9 303 185 2200 99 7 0 chr13 17935904 17936212 -101808686 + AluSq SINE Alu 1 310 0 33 66 0 0 chr13 17936528 17936589 -101808309 + AT_rich Low_complexity Low_complexity 1 61 0 1797 98 70 35 chr13 17936617 17936902 -101807996 - AluSg SINE Alu -15 295 1 803 100 0 50 chr13 17936921 17937041 -101807857 - AluSg/x SINE Alu -11 301 188 35 0 0 0 chr13 17937070 17937105 -101807793 + AT_rich Low_complexity Low_complexity 1 35 0 4839 36 0 23 chr13 17937105 17937680 -101807218 - L1PA4 LINE L1 -3 6152 5591 2043 106 39 7 chr13 17937689 17937972 -101806926 + AluSx SINE Alu 1 292 -20 1527 142 138 87 chr13 17938033 17938485 -101806413 + LTR54B LTR ERV1 1 479 -19 2512 76 0 0 chr13 17938485 17938788 -101806110 - AluSx SINE Alu -9 303 1 1527 142 138 87 chr13 17938788 17938807 -101806091 + LTR54B LTR ERV1 479 496 -2 24 53 0 0 chr13 17938830 17938868 -101806030 + AT_rich Low_complexity Low_complexity 1 38 0 489 273 8 8 chr13 17939234 17939366 -101805532 - MIR SINE MIR -15 247 116 254 326 31 8 chr13 17939384 17939513 -101805385 + L1MC4a LINE L1 5793 5924 -1884 1857 160 20 0 chr13 17940492 17940798 -101804100 + AluSx SINE Alu 1 312 0 935 286 54 27 chr13 17940812 17941182 -101803716 - MER93a LTR ERV1 -4 398 19 1446 185 15 59 chr13 17941185 17941509 -101803389 - AluJo SINE Alu -2 310 1 918 213 81 52 chr13 17941520 17941928 -101802970 + Charlie2 DNA MER1_type 2235 2654 -208 1439 171 0 28 chr13 17941931 17942183 -101802715 + AluJo SINE Alu 47 291 -21 876 249 95 21 chr13 17942201 17942404 -101802494 - Charlie2 DNA MER1_type -639 2223 1984 1802 211 32 51 chr13 17942404 17942877 -101802021 - MLT1C LTR MaLR -3 464 1 876 249 95 21 chr13 17942877 17943010 -101801888 - Charlie2 DNA MER1_type -878 1984 1862 498 264 218 0 chr13 17943022 17943238 -101801660 - Charlie2 DNA MER1_type -2540 322 60 278 258 89 16 chr13 17943844 17943968 -101800930 + L1MC4a LINE L1 5765 5897 -1911 2160 115 0 3 chr13 17944140 17944435 -101800463 - AluSx SINE Alu -18 294 1 221 188 29 29 chr13 17944451 17944520 -101800378 + A-rich Low_complexity Low_complexity 4 72 0 1918 140 0 0 chr13 17944736 17945007 -101799891 - AluSx SINE Alu -32 280 10 21 0 0 0 chr13 17945174 17945195 -101799703 + AT_rich Low_complexity Low_complexity 1 21 0 1705 93 0 25 chr13 17945208 17945444 -101799454 + AluSp SINE Alu 84 313 0 528 293 77 34 chr13 17945534 17945831 -101799067 + L2 LINE L2 2551 2860 -454 474 350 79 18 chr13 17945924 17946201 -101798697 + L2 LINE L2 3019 3312 -1 2336 55 0 61 chr13 17946480 17946824 -101798074 - AluY SINE Alu 0 311 1 2132 107 6 31 chr13 17946916 17947128 -101797770 - AluSq SINE Alu -4 309 106 234 0 0 0 chr13 17947128 17947154 -101797744 + (CTAGG)n Simple_repeat Simple_repeat 4 29 0 2132 107 6 31 chr13 17947154 17947258 -101797640 - AluSq SINE Alu -207 106 1 3405 150 14 12 chr13 17947504 17948078 -101796820 + L1MC1 LINE L1 5428 6002 -331 1247 158 27 18 chr13 17948104 17948326 -101796572 + L1MC1 LINE L1 6104 6327 -6 216 0 0 0 chr13 17948425 17948449 -101796449 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1501 155 22 43 chr13 17948477 17948592 -101796306 + AluJb SINE Alu 26 142 -170 2176 114 6 19 chr13 17948592 17948908 -101795990 + AluSx SINE Alu 1 312 0 1501 155 22 43 chr13 17948908 17949069 -101795829 + AluJb SINE Alu 142 296 -16 2189 116 7 0 chr13 17949071 17949373 -101795525 + AluSg SINE Alu 1 304 -6 340 118 29 15 chr13 17949392 17949460 -101795438 + GA-rich Low_complexity Low_complexity 4 72 0 1033 168 0 53 chr13 17949460 17949650 -101795248 + AluJo SINE Alu 6 185 -127 37 0 0 0 chr13 17949650 17949687 -101795211 + AT_rich Low_complexity Low_complexity 1 37 0 2302 181 18 2 chr13 17949810 17950207 -101794691 + MER57A LTR ERV1 1 403 0 204 295 16 0 chr13 17950272 17950333 -101794565 - MIR3 SINE MIR -3 205 144 1290 110 53 57 chr13 17950370 17950598 -101794300 - MER30 DNA MER1_type 0 230 4 4597 151 49 21 chr13 17950661 17950872 -101794026 + L1MA8 LINE L1 5107 5311 -980 1826 148 0 40 chr13 17950872 17951176 -101793722 + AluSx SINE Alu 1 292 -20 4597 151 49 21 chr13 17951176 17951187 -101793711 + L1MA8 LINE L1 5311 5320 -971 4597 137 32 30 chr13 17951187 17951995 -101792903 + L1MA8 LINE L1 5480 6289 -2 4597 151 49 21 chr13 17951995 17952016 -101792882 + L1MA8 LINE L1 5320 6289 -2 247 263 102 68 chr13 17952227 17952310 -101792588 - MIR3 SINE MIR -30 178 88 1443 201 110 48 chr13 17952310 17952683 -101792215 + MSTD LTR MaLR 1 396 0 247 263 102 68 chr13 17952683 17952717 -101792181 - MIR3 SINE MIR -120 88 57 2508 75 0 3 chr13 17952867 17953172 -101791726 + AluSc SINE Alu 1 304 -5 531 201 56 153 chr13 17953271 17953559 -101791339 - MER112 DNA MER1_type 0 260 1 2408 52 42 0 chr13 17953591 17953880 -101791018 - AluY SINE Alu -10 301 1 209 204 20 20 chr13 17953954 17954003 -101790895 + MIR SINE MIR 4 52 -210 2036 144 3 3 chr13 17954278 17954576 -101790322 - AluSx SINE Alu -14 298 1 270 0 0 0 chr13 17954603 17954633 -101790265 + (TTA)n Simple_repeat Simple_repeat 2 31 0 513 278 37 53 chr13 17954736 17954981 -101789917 - MIR SINE MIR 0 262 22 1217 84 0 0 chr13 17955095 17955250 -101789648 - AluSg/x SINE Alu -21 289 135 184 260 20 0 chr13 17955262 17955312 -101789586 - MIR SINE MIR -110 152 102 2393 170 46 11 chr13 17955449 17955908 -101788990 - L1MB7 LINE L1 -16 6168 5694 21 82 0 0 chr13 17957768 17957817 -101787081 + GC_rich Low_complexity Low_complexity 1 49 0 209 221 47 35 chr13 17957925 17958011 -101786887 + G-rich Low_complexity Low_complexity 4 90 0 24 67 0 0 chr13 17958135 17958180 -101786718 + GC_rich Low_complexity Low_complexity 1 45 0 213 185 83 28 chr13 17958654 17958762 -101786136 + (CGGGG)n Simple_repeat Simple_repeat 1 114 0 * 223 167 61 0 chr13 17958707 17958773 -101786125 + (CGG)n Simple_repeat Simple_repeat 1 70 0 24 32 0 0 chr13 17958805 17958836 -101786062 + GC_rich Low_complexity Low_complexity 1 31 0 313 229 46 37 chr13 17960676 17960785 -101784113 - L1MC5 LINE L1 -30 7931 7822 21 36 0 0 chr13 17961982 17962010 -101782888 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr13 17962052 17962072 -101782826 + (TA)n Simple_repeat Simple_repeat 2 21 0 2309 117 3 0 chr13 17962072 17962379 -101782519 - AluSq SINE Alu -5 308 1 2017 89 22 61 chr13 17962380 17962693 -101782205 - AluSx SINE Alu -11 301 1 2060 133 10 0 chr13 17963652 17963952 -101780946 + AluSx SINE Alu 1 303 -9 812 160 0 0 chr13 17963995 17964120 -101780778 - FLAM_C SINE Alu -18 125 1 783 107 99 0 chr13 17964534 17964655 -101780243 + L1PA6 LINE L1 6022 6154 0 2238 110 3 19 chr13 17965324 17965634 -101779264 - AluSx SINE Alu -7 305 1 2118 107 4 0 chr13 17965672 17965989 -101778909 - AluSp SINE Alu 0 318 1 1914 119 49 0 chr13 17966010 17966296 -101778602 - AluSp SINE Alu -13 300 1 439 241 35 28 chr13 17967025 17967170 -101777728 + L1ME1 LINE L1 6017 6162 -4 269 290 142 41 chr13 17967187 17967356 -101777542 + MIR SINE MIR 64 249 -13 2062 105 0 60 chr13 17967803 17968117 -101776781 - AluSq SINE Alu -18 295 1 256 304 54 18 chr13 17968911 17969023 -101775875 + MIR SINE MIR 42 157 -105 198 0 0 0 chr13 17970156 17970178 -101774720 + (A)n Simple_repeat Simple_repeat 1 22 0 314 333 106 80 chr13 17970216 17970630 -101774268 - L2 LINE L2 -4 3268 2844 210 191 0 0 chr13 17970776 17970818 -101774080 + (TA)n Simple_repeat Simple_repeat 1 42 0 2223 124 3 0 chr13 17970818 17971125 -101773773 - AluSp SINE Alu -5 308 1 382 321 194 19 chr13 17971178 17971555 -101773343 - L2 LINE L2 -697 2617 2175 761 294 127 20 chr13 17971997 17972399 -101772499 - L1MC4a LINE L1 -1896 5912 5468 258 81 0 0 chr13 17972453 17972490 -101772408 + (TA)n Simple_repeat Simple_repeat 1 37 0 2408 90 0 0 chr13 17972491 17972792 -101772106 - AluSq SINE Alu -12 301 1 2350 104 0 13 chr13 17972944 17973260 -101771638 + AluSx SINE Alu 1 312 0 1429 134 36 13 chr13 17973298 17973522 -101771376 - MER30 DNA MER1_type 0 230 2 338 228 49 41 chr13 17973536 17973659 -101771239 + L1M4 LINE L1 4487 4610 -1536 447 288 134 22 chr13 17973824 17974034 -101770864 - L1MC4a LINE L1 -1904 5904 5644 2229 96 14 0 chr13 17974034 17974325 -101770573 - AluSg SINE Alu -15 295 1 447 288 134 22 chr13 17974325 17974434 -101770464 - L1MC4a LINE L1 -2164 5644 5549 2996 185 63 9 chr13 17974745 17975393 -101769505 - L1MB4 LINE L1 -14 6166 5484 405 0 0 0 chr13 17975417 17975462 -101769436 + (TATG)n Simple_repeat Simple_repeat 3 47 0 743 173 0 39 chr13 17975462 17975580 -101769318 - FLAM_C SINE Alu -187 115 1 2226 115 13 0 chr13 17975607 17975911 -101768987 + AluSc SINE Alu 1 308 -1 1838 187 66 0 chr13 17975963 17976326 -101768572 - L1MB2 LINE L1 -2 6169 5783 * 2423 214 109 71 chr13 17976319 17976740 -101768158 - L1M4 LINE L1 -3493 3151 2747 815 169 0 29 chr13 17976740 17976876 -101768022 - FLAM_C SINE Alu -1 132 1 2423 214 109 71 chr13 17976876 17977034 -101767864 - L1M4 LINE L1 -3897 2747 2596 2334 77 10 13 chr13 17977034 17977345 -101767553 - AluY SINE Alu -1 310 1 2423 214 109 71 chr13 17977345 17977436 -101767462 - L1M4 LINE L1 -4048 2596 2510 2225 98 0 3 chr13 17977436 17977732 -101767166 - AluY SINE Alu -16 295 1 2423 214 109 71 chr13 17977732 17977970 -101766928 - L1M4 LINE L1 -4134 2510 2282 2273 87 7 10 chr13 17977970 17978270 -101766628 - AluSp SINE Alu -14 299 1 2423 214 109 71 chr13 17978270 17978891 -101766007 - L1M4 LINE L1 -4362 2282 1566 291 236 59 98 chr13 17978894 17979097 -101765801 - L1M4 LINE L1 -5520 1022 828 328 344 43 66 chr13 17979238 17979543 -101765355 - L1M4 LINE L1 -6084 562 265 41 14 5 0 chr13 17979604 17979687 -101765211 + AT_rich Low_complexity Low_complexity 1 48 0 326 269 138 30 chr13 17979769 17980025 -101764873 - L1M4 LINE L1 -1173 4973 4657 2311 113 0 3 chr13 17980025 17980335 -101764563 + AluSx SINE Alu 1 309 -3 326 269 138 30 chr13 17980335 17980476 -101764422 - L1M4 LINE L1 -1489 4657 4533 1721 197 3 0 chr13 17980545 17980881 -101764017 + AluJo SINE Alu 1 337 0 1050 134 24 93 chr13 17980889 17981135 -101763763 - L1MC5 LINE L1 -1023 6938 6710 796 283 112 40 chr13 17981138 17981781 -101763117 - HAL1 LINE L1 -1400 1107 419 2019 112 0 0 chr13 17981837 17982106 -101762792 - AluSx SINE Alu -6 306 38 392 42 0 0 chr13 17982155 17982203 -101762695 + MADE1 DNA Mariner 1 48 -32 627 269 10 35 chr13 17982338 17982539 -101762359 - HAL1 LINE L1 -2272 235 40 377 392 25 32 chr13 17982556 17982703 -101762195 - L1M4 LINE L1 -1821 4325 4179 2233 111 0 3 chr13 17982703 17983001 -101761897 - AluSx SINE Alu -15 297 1 377 392 25 32 chr13 17983001 17983131 -101761767 - L1M4 LINE L1 -1967 4179 4050 1912 159 3 0 chr13 17983174 17983483 -101761415 - AluJb SINE Alu -2 310 1 1737 192 0 0 chr13 17984682 17984979 -101759919 - AluJb SINE Alu -15 297 1 1291 135 19 126 chr13 17985115 17985456 -101759442 + AluJo SINE Alu 1 307 0 1294 194 3 45 chr13 17985458 17985747 -101759151 + AluJo SINE Alu 1 277 -35 251 27 0 27 chr13 17985749 17985786 -101759112 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 458 171 128 8 chr13 17985818 17985935 -101758963 + FLAM_A SINE Alu 12 142 0 24 32 0 0 chr13 17986116 17986147 -101758751 + AT_rich Low_complexity Low_complexity 1 31 0 264 321 169 27 chr13 17986256 17986376 -101758522 - MIR SINE MIR 0 262 160 2372 84 0 28 chr13 17986376 17986696 -101758202 + AluSx SINE Alu 1 311 -1 264 321 169 27 chr13 17986696 17986759 -101758139 - MIR SINE MIR -102 160 53 2090 103 3 3 chr13 17986824 17987115 -101757783 - AluSg SINE Alu -17 293 3 382 116 0 23 chr13 17987127 17987213 -101757685 + (TG)n Simple_repeat Simple_repeat 2 85 0 1214 181 23 5 chr13 17987250 17987466 -101757432 - AluJb SINE Alu -92 220 1 213 264 14 56 chr13 17987966 17988038 -101756860 - L2 LINE L2 -6 3266 3198 2043 92 16 33 chr13 17988052 17988356 -101756542 + AluSc SINE Alu 1 299 -10 1735 86 117 52 chr13 17988808 17988854 -101756044 - L1MA2 LINE L1 -6 6298 6256 1804 141 0 0 chr13 17988854 17989116 -101755782 - AluSx SINE Alu -8 304 43 1735 86 117 52 chr13 17989116 17989393 -101755505 - L1MA2 LINE L1 -48 6256 5954 668 292 107 0 chr13 17989458 17989691 -101755207 + L2 LINE L2 2523 2780 -534 325 250 29 59 chr13 17989694 17989830 -101755068 + L2 LINE L2 3182 3313 0 476 333 52 26 chr13 17989854 17990085 -101754813 + L2 LINE L2 2823 3059 -254 422 120 13 0 chr13 17990603 17990678 -101754220 + (TG)n Simple_repeat Simple_repeat 1 76 0 1884 159 3 20 chr13 17990678 17990974 -101753924 - AluJo SINE Alu -21 291 1 250 241 38 38 chr13 17990980 17991059 -101753839 + L2 LINE L2 3186 3264 -8 204 272 49 25 chr13 17991084 17991165 -101753733 + MIR SINE MIR 47 129 -133 1756 144 4 14 chr13 17991169 17991446 -101753452 - AluJb SINE Alu 0 312 39 822 202 31 40 chr13 17991448 17991671 -101753227 - MLT1D LTR MaLR -283 222 2 1420 154 75 26 chr13 17991825 17991952 -101752946 + AluJb SINE Alu 1 120 -192 189 0 0 0 chr13 17991952 17991973 -101752925 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1420 154 75 26 chr13 17991973 17992112 -101752786 + AluJb SINE Alu 120 280 -32 885 104 0 22 chr13 17993753 17993887 -101751011 + FLAM_C SINE Alu 1 131 -2 2056 107 21 17 chr13 17994053 17994343 -101750555 - AluSx SINE Alu -21 291 1 25 23 0 23 chr13 17994374 17994399 -101750499 + AT_rich Low_complexity Low_complexity 1 26 -16 1570 190 0 40 chr13 17994399 17994699 -101750199 - AluJo SINE Alu -24 288 1 25 23 0 23 chr13 17994699 17994716 -101750182 + AT_rich Low_complexity Low_complexity 26 42 0 284 233 27 0 chr13 17994779 17994852 -101750046 - L1MA10 LINE L1 0 6334 6260 31 0 0 0 chr13 17994906 17994937 -101749961 + AT_rich Low_complexity Low_complexity 1 31 0 1523 153 120 7 chr13 17994959 17995233 -101749665 - AluSg1 SINE Alu -4 305 1 1078 178 28 37 chr13 17995345 17995559 -101749339 + AluJb SINE Alu 85 296 -16 1640 180 0 48 chr13 17995854 17995999 -101748899 + AluJo SINE Alu 2 126 -186 2014 116 34 0 chr13 17995999 17996291 -101748607 + AluSx SINE Alu 1 302 -10 1640 180 0 48 chr13 17996291 17996456 -101748442 + AluJo SINE Alu 126 297 -15 437 239 0 18 chr13 17996480 17996593 -101748305 + FAM SINE Alu 41 151 -34 407 197 0 0 chr13 17996850 17996926 -101747972 - L1ME LINE L1 -437 5684 5609 210 118 0 0 chr13 17997061 17997095 -101747803 + (TG)n Simple_repeat Simple_repeat 2 35 0 227 256 47 12 chr13 17997097 17997183 -101747715 - L1ME LINE L1 -507 5614 5526 13410 126 85 16 chr13 17998747 17999365 -101745533 + Tigger1 DNA MER2_type 1 575 -1843 1628 174 24 17 chr13 17999365 17999652 -101745246 - AluJb SINE Alu -23 289 1 13410 126 85 16 chr13 17999652 18000664 -101744234 + Tigger1 DNA MER2_type 575 1834 -584 2019 152 7 0 chr13 18000664 18000967 -101743931 + AluSx SINE Alu 1 305 -7 13410 126 85 16 chr13 18000967 18001596 -101743302 + Tigger1 DNA MER2_type 1834 2418 0 358 254 182 22 chr13 18001849 18002030 -101742868 - MIR SINE MIR -2 260 51 648 155 105 33 chr13 18002051 18002232 -101742666 - L1MA8 LINE L1 -3 6288 6095 2054 128 0 49 chr13 18003176 18003503 -101741395 - AluSx SINE Alu -1 311 1 2274 68 0 4 chr13 18003802 18004108 -101740790 - AluY SINE Alu 0 306 2 1748 179 3 10 chr13 18005502 18005803 -101739095 + AluJo SINE Alu 1 299 -13 282 164 295 0 chr13 18006283 18006344 -101738554 - Tigger5 DNA MER2_type -2244 79 1 242 224 0 0 chr13 18006381 18006430 -101738468 - Tigger5 DNA MER2_type -17 2306 2258 * 405 188 52 31 chr13 18006411 18006507 -101738391 + Tigger5 DNA MER2_type 2226 2323 0 2310 86 0 3 chr13 18006697 18006988 -101737910 - AluSq SINE Alu -20 293 4 247 211 28 28 chr13 18007016 18007087 -101737811 - L1 LINE L1 -3324 2822 2752 382 266 62 76 chr13 18007127 18007175 -101737723 - L1 LINE L1 -2227 3919 3872 2128 127 3 0 chr13 18007175 18007475 -101737423 - AluSx SINE Alu -11 301 1 382 266 62 76 chr13 18007475 18007502 -101737396 - L1 LINE L1 -2274 3872 3846 914 204 90 75 chr13 18007502 18007686 -101737212 + MER44D DNA MER2_type 2 182 -2309 2002 145 0 3 chr13 18007686 18007982 -101736916 - AluSx SINE Alu -14 298 4 914 204 90 75 chr13 18007982 18008130 -101736768 + MER44D DNA MER2_type 182 609 0 382 266 62 76 chr13 18008130 18008343 -101736555 - L1 LINE L1 -2300 3846 3634 380 275 159 48 chr13 18008349 18008658 -101736240 + L1 LINE L1 2995 3337 -2809 244 290 50 0 chr13 18008834 18008934 -101735964 + L1 LINE L1 3515 3619 -2527 7987 217 67 46 chr13 18008957 18009738 -101735160 - L1MB4 LINE L1 -6 6410 5647 1770 151 6 25 chr13 18009738 18010056 -101734842 - AluSx SINE Alu 0 312 1 7987 217 67 46 chr13 18010056 18010159 -101734739 - L1MB4 LINE L1 -769 5647 5548 2172 118 0 0 chr13 18010159 18010493 -101734405 - AluSg SINE Alu 0 310 1 1391 159 23 0 chr13 18010496 18010760 -101734138 - L1MA5 LINE L1 0 6300 6031 7987 217 67 46 chr13 18010760 18010806 -101734092 - L1MB4 LINE L1 -869 5547 5503 1113 196 35 4 chr13 18010806 18011035 -101733863 - MER46A DNA MER2_type 0 236 1 7987 217 67 46 chr13 18011035 18011120 -101733778 - L1MB4 LINE L1 -913 5503 5421 2117 112 3 22 chr13 18011120 18011297 -101733601 - AluSx SINE Alu -3 309 139 2173 115 3 3 chr13 18011297 18011602 -101733296 - AluSx SINE Alu -5 307 3 2117 112 3 22 chr13 18011602 18011737 -101733161 - AluSx SINE Alu -173 139 3 1907 146 3 14 chr13 18011739 18012034 -101732864 - AluSx SINE Alu -20 292 1 7987 217 67 46 chr13 18012034 18013625 -101731273 - L1MB4 LINE L1 -995 5421 3864 2144 100 0 4 chr13 18013625 18013926 -101730972 - AluSc SINE Alu 0 300 1 7987 217 67 46 chr13 18013926 18014317 -101730581 - L1MB4 LINE L1 -2552 3864 3483 2090 128 17 0 chr13 18014317 18014613 -101730285 - AluSx SINE Alu -9 303 3 7987 217 67 46 chr13 18014613 18016600 -101728298 - L1MB4 LINE L1 -2933 3483 1169 617 270 144 46 chr13 18016616 18016901 -101727997 - L1MDa LINE L1 -5898 642 330 * 1225 226 82 45 chr13 18016897 18017743 -101727155 - L1MDa LINE L1 -4745 1795 749 307 206 211 10 chr13 18017764 18017963 -101726935 + Charlie7 DNA MER1_type 2373 2611 -1 2155 119 3 3 chr13 18018353 18018665 -101726233 + AluSq SINE Alu 2 313 0 191 257 0 0 chr13 18019432 18019467 -101725431 + L2 LINE L2 3259 3293 -20 448 208 52 78 chr13 18019614 18019768 -101725130 - L1MC4 LINE L1 -242 7800 7651 2156 82 41 3 chr13 18019786 18020078 -101724820 - AluSp SINE Alu -10 303 1 311 250 81 32 chr13 18020078 18020202 -101724696 - L1MEc LINE L1 -4956 1586 1457 207 143 0 41 chr13 18020203 18020252 -101724646 + (TATTG)n Simple_repeat Simple_repeat 5 51 0 1847 240 57 111 chr13 18020255 18020535 -101724363 - L1MEc LINE L1 -5202 1623 1329 2445 65 0 0 chr13 18020535 18020829 -101724069 - AluY SINE Alu -17 294 1 1847 240 57 111 chr13 18020829 18021746 -101723152 - L1MEc LINE L1 -5496 1329 491 1321 167 98 0 chr13 18021765 18022052 -101722846 - L1MC4 LINE L1 -422 7620 7306 1060 213 139 18 chr13 18022379 18022774 -101722124 - Charlie4a DNA MER1_type -4 504 62 2224 123 3 0 chr13 18023478 18023787 -101721111 - AluSg SINE Alu 0 310 1 434 139 0 13 chr13 18024956 18025035 -101719863 - FLAM_A SINE Alu -10 132 55 454 163 0 22 chr13 18025086 18025178 -101719720 - AluJ/FLAM SINE Alu -218 94 5 189 0 0 0 chr13 18025197 18025218 -101719680 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1497 129 133 0 chr13 18025226 18025474 -101719424 - MER7A DNA MER2_type -1 345 67 33 25 0 0 chr13 18025598 18025638 -101719260 + AT_rich Low_complexity Low_complexity 1 40 0 542 305 138 27 chr13 18027179 18027513 -101717385 + L3 LINE CR1 1163 1533 -44 1702 179 9 18 chr13 18028096 18028425 -101716473 + MER2 DNA MER2_type 1 326 -19 1480 207 36 25 chr13 18028626 18028984 -101715914 - MLT1A1 LTR MaLR -3 362 1 2035 138 10 0 chr13 18029356 18029647 -101715251 - AluSx SINE Alu -16 296 3 2262 108 0 16 chr13 18029775 18029953 -101714945 - AluSx SINE Alu -2 310 138 2548 57 0 0 chr13 18029953 18030252 -101714646 - AluY SINE Alu -12 299 1 2262 108 0 16 chr13 18030252 18030388 -101714510 - AluSx SINE Alu -174 138 1 28 71 0 0 chr13 18030667 18030723 -101714175 + AT_rich Low_complexity Low_complexity 1 56 0 2195 112 13 0 chr13 18031420 18031725 -101713173 - AluSx SINE Alu -3 309 1 2470 87 0 0 chr13 18032154 18032463 -101712435 - AluSx SINE Alu -3 309 1 21 36 0 0 chr13 18035420 18035448 -101709450 + AT_rich Low_complexity Low_complexity 1 28 0 2258 93 20 3 chr13 18036768 18037069 -101707829 - AluSx SINE Alu -6 306 1 365 97 81 0 chr13 18037302 18037364 -101707534 - L1PA13 LINE L1 -8 6806 6740 2715 108 35 0 chr13 18037411 18037817 -101707081 - L1PA13 LINE L1 -60 6754 6335 18824 188 39 17 chr13 18037817 18039028 -101705870 - L1PA13 LINE L1 -967 5830 4647 2241 96 0 10 chr13 18039028 18039330 -101705568 - AluY SINE Alu -12 299 1 18824 188 39 17 chr13 18039330 18042279 -101702619 - L1PA13 LINE L1 -2150 4647 1506 2025 157 0 0 chr13 18042279 18042578 -101702320 - AluSx SINE Alu -13 299 1 18824 188 39 17 chr13 18042578 18044118 -101700780 - L1PA13 LINE L1 -5291 1506 1 2417 88 0 0 chr13 18044322 18044627 -101700271 + AluSx SINE Alu 1 305 -7 25 51 0 0 chr13 18045365 18045404 -101699494 + AT_rich Low_complexity Low_complexity 1 39 0 1744 161 20 33 chr13 18045514 18045818 -101699080 + AluJo SINE Alu 1 300 -12 1612 203 0 23 chr13 18045821 18046122 -101698776 + AluJo SINE Alu 3 296 -16 243 0 0 0 chr13 18046138 18046165 -101698733 + (TG)n Simple_repeat Simple_repeat 2 28 0 333 250 71 0 chr13 18046165 18046249 -101698649 + L1MC4 LINE L1 6614 6703 -1339 320 298 21 0 chr13 18046181 18046275 -101698623 - L1MC4 LINE L1 -1339 6703 6608 * 31 58 0 0 chr13 18047844 18047896 -101697002 + AT_rich Low_complexity Low_complexity 1 52 0 210 304 43 0 chr13 18048229 18048298 -101696600 + L3 LINE CR1 1459 1530 -47 292 258 250 23 chr13 18049198 18049326 -101695572 + MIR SINE MIR 44 200 -62 24 32 0 0 chr13 18050457 18050488 -101694410 + AT_rich Low_complexity Low_complexity 1 31 0 25 75 0 0 chr13 18051541 18051594 -101693304 + AT_rich Low_complexity Low_complexity 1 53 0 344 261 11 22 chr13 18052830 18052922 -101691976 - MER5B DNA MER1_type -1 177 87 2142 88 34 10 chr13 18052934 18053229 -101691669 + AluSq SINE Alu 1 302 -11 417 244 0 0 chr13 18053738 18053828 -101691070 + MIR SINE MIR 78 167 -95 552 321 74 4 chr13 18053877 18054120 -101690778 + MIR SINE MIR 2 261 -1 337 179 90 13 chr13 18054407 18054485 -101690413 - MIR SINE MIR -110 152 69 658 194 61 92 chr13 18054494 18054690 -101690208 - MER8 DNA MER2_type -1 238 49 2233 177 40 38 chr13 18054768 18055221 -101689677 - MER82 DNA MER2_type 0 653 200 294 314 65 54 chr13 18055799 18056076 -101688822 + Tigger2 DNA MER2_type 1411 1690 -1028 1827 155 34 0 chr13 18056651 18056825 -101688073 - AluSx SINE Alu -5 307 117 249 109 0 0 chr13 18056825 18056871 -101688027 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1827 155 34 0 chr13 18056871 18056993 -101687905 - AluSx SINE Alu -195 117 1 653 218 56 0 chr13 18057277 18057419 -101687479 - MER82 DNA MER2_type -492 161 12 342 113 25 125 chr13 18059183 18059263 -101685635 + Tigger2 DNA MER2_type 1 72 -2646 253 222 111 0 chr13 18059266 18059320 -101685578 - MER2 DNA MER2_type -4 341 282 * 473 172 192 86 chr13 18059299 18059329 -101685569 - MER8 DNA MER2_type -64 175 150 1823 160 7 0 chr13 18059329 18059610 -101685288 + AluJb SINE Alu 21 303 -9 473 172 192 86 chr13 18059610 18059730 -101685168 - MER8 DNA MER2_type -89 150 9 2289 100 3 0 chr13 18059952 18060252 -101684646 + AluSq SINE Alu 1 301 -12 183 42 0 0 chr13 18061137 18061161 -101683737 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1826 153 22 0 chr13 18061163 18061438 -101683460 - AluSx SINE Alu -31 281 1 368 191 112 79 chr13 18061706 18061858 -101683040 - MER112 DNA MER1_type -6 254 98 1894 109 0 0 chr13 18062734 18062982 -101681916 + AluJb SINE Alu 59 306 -6 2242 95 11 0 chr13 18063056 18063340 -101681558 + AluSq SINE Alu 3 289 -24 426 92 63 29 chr13 18063340 18063514 -101681384 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 71 0 0 chr13 18064212 18064254 -101680644 + AT_rich Low_complexity Low_complexity 1 42 0 207 281 16 16 chr13 18064254 18064375 -101680523 + (TTA)n Simple_repeat Simple_repeat 2 122 0 1136 191 12 16 chr13 18064814 18065070 -101679828 + L1M4 LINE L1 4947 5201 -945 1318 122 141 53 chr13 18065072 18065335 -101679563 + AluJo SINE Alu 1 286 -26 286 83 0 0 chr13 18065351 18065387 -101679511 + U1 snRNA snRNA 1 36 -129 * 316 166 0 11 chr13 18065368 18065440 -101679458 + Alu SINE Alu 248 300 -2 586 190 17 17 chr13 18065796 18065912 -101678986 - Tigger2 DNA MER2_type 0 2718 2603 * 1939 113 88 105 chr13 18065907 18066315 -101678583 - Tigger2 DNA MER2_type -39 2679 1 24 53 0 0 chr13 18066755 18066793 -101678105 + AT_rich Low_complexity Low_complexity 1 38 0 518 264 64 90 chr13 18067841 18068152 -101676746 + MER46C DNA MER2_type 34 336 -2 1232 228 60 116 chr13 18068651 18069339 -101675559 - L1MDa LINE L1 -1814 4401 3753 2198 89 10 3 chr13 18070072 18070365 -101674533 - AluSc SINE Alu -14 295 1 941 94 106 12 chr13 18070655 18070815 -101674083 - AluSg/x SINE Alu -21 291 117 3222 125 60 2 chr13 18070831 18071386 -101673512 - MER51C LTR ERV1 0 640 1 889 212 38 128 chr13 18071740 18071794 -101673104 - L1MDa LINE L1 -2467 3748 3691 2214 113 0 3 chr13 18071794 18072095 -101672803 + AluSq SINE Alu 1 300 -13 889 212 38 128 chr13 18072095 18072431 -101672467 - L1MDa LINE L1 -2524 3691 3393 2112 141 3 6 chr13 18072451 18072764 -101672134 - AluSx SINE Alu 0 312 1 517 178 10 10 chr13 18072791 18072892 -101672006 - MER58 DNA MER1_type 0 2420 2320 470 202 148 5 chr13 18073034 18073237 -101671661 - L1MDa LINE L1 -2982 3233 3002 21 36 0 0 chr13 18073278 18073306 -101671592 + AT_rich Low_complexity Low_complexity 1 28 0 2136 137 3 8 chr13 18073396 18073753 -101671145 - L1MB3 LINE L1 -3 6180 5826 378 0 0 0 chr13 18073753 18073795 -101671103 + (TG)n Simple_repeat Simple_repeat 1 42 0 1613 181 0 17 chr13 18073806 18074093 -101670805 - AluJb SINE Alu -30 282 1 2518 51 0 0 chr13 18074100 18074394 -101670504 - AluY SINE Alu -17 294 1 319 164 30 0 chr13 18074456 18074523 -101670375 + L1MB2 LINE L1 6096 6164 -7 1724 122 17 51 chr13 18075227 18075523 -101669375 - AluSx SINE Alu -5 307 22 2186 50 90 7 chr13 18075720 18075999 -101668899 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 18076132 18076154 -101668744 + AT_rich Low_complexity Low_complexity 1 22 0 536 210 206 0 chr13 18076548 18076781 -101668117 + MER33 DNA MER1_type 44 324 0 23 0 0 0 chr13 18076884 18076907 -101667991 + AT_rich Low_complexity Low_complexity 1 23 0 2462 79 3 0 chr13 18076919 18077224 -101667674 + AluSc SINE Alu 1 306 -3 365 203 26 123 chr13 18078232 18078371 -101666527 - L1MDa LINE L1 -3828 2387 2264 1913 143 7 7 chr13 18078371 18078665 -101666233 - AluJb SINE Alu -14 298 5 365 203 26 123 chr13 18078665 18078701 -101666197 - L1MDa LINE L1 -3951 2264 2226 303 253 55 22 chr13 18078762 18078853 -101666045 - MER58 DNA MER1_type -2151 269 176 232 250 19 0 chr13 18078850 18078902 -101665996 - MER58 DNA MER1_type -158 57 5 * 956 215 105 12 chr13 18078913 18079238 -101665660 - L1MDa LINE L1 -4139 2257 1903 21 36 0 0 chr13 18080615 18080643 -101664255 + AT_rich Low_complexity Low_complexity 1 28 0 2325 90 3 10 chr13 18080930 18081240 -101663658 - AluSp SINE Alu -5 308 1 1842 154 0 10 chr13 18081896 18082188 -101662710 - AluJo SINE Alu -20 292 4 713 226 53 11 chr13 18082229 18082419 -101662479 - MER58A DNA MER1_type 0 224 27 1542 142 63 79 chr13 18082782 18083149 -101661749 - MER46B DNA MER2_type 0 236 1 428 204 76 52 chr13 18083328 18083500 -101661398 + MER104 DNA MER2_type 2 177 -3 21 0 0 0 chr13 18084107 18084128 -101660770 + AT_rich Low_complexity Low_complexity 1 21 0 203 27 0 81 chr13 18084373 18084410 -101660488 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 312 207 73 0 chr13 18084601 18084683 -101660215 + L1MC4 LINE L1 1982 6983 -1339 592 178 124 0 chr13 18088496 18088625 -101656273 - MER46C DNA MER2_type -5 333 189 302 165 38 25 chr13 18088699 18088778 -101656120 - MER46C DNA MER2_type -257 81 2 229 272 211 26 chr13 18089099 18089213 -101655685 - L2 LINE L2 0 3272 3138 392 205 13 0 chr13 18089577 18089655 -101655243 + L2 LINE L2 3231 3309 -4 190 333 38 38 chr13 18089913 18090018 -101654880 - MER5A DNA MER1_type -28 161 57 364 224 197 48 chr13 18090510 18090657 -101654241 - MIR SINE MIR -88 174 6 7383 199 104 56 chr13 18090982 18091299 -101653599 - Cheshire DNA MER1_type 0 2420 2120 520 69 0 0 chr13 18091299 18091371 -101653527 + Alu SINE Alu 1 72 -237 7383 199 104 56 chr13 18091371 18093291 -101651607 - Cheshire DNA MER1_type -300 2120 2 2147 120 0 0 chr13 18093339 18093639 -101651259 - AluSx SINE Alu -12 300 1 269 183 33 0 chr13 18093650 18093710 -101651188 + L2 LINE L2 1411 1472 -1842 320 282 137 0 chr13 18093710 18093827 -101651071 + L2 LINE L2 1646 1778 -1536 285 307 123 9 chr13 18095259 18095373 -101649525 + L2 LINE L2 3145 3271 -1 379 345 103 5 chr13 18096412 18096606 -101648292 + MIR SINE MIR 34 246 -16 201 74 0 0 chr13 18096677 18096704 -101648194 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 1531 219 41 24 chr13 18096853 18097246 -101647652 - MSTD LTR MaLR -2 394 3 366 23 0 0 chr13 18097779 18097822 -101647076 + (CA)n Simple_repeat Simple_repeat 2 44 0 28 0 0 0 chr13 18098056 18098084 -101646814 + AT_rich Low_complexity Low_complexity 1 28 0 867 112 0 14 chr13 18098709 18098852 -101646046 - L1MB3 LINE L1 -217 5966 5826 414 0 0 0 chr13 18098852 18098898 -101646000 + (TG)n Simple_repeat Simple_repeat 1 46 0 1611 181 0 17 chr13 18098913 18099200 -101645698 - AluJb SINE Alu -30 282 1 2514 51 0 0 chr13 18099207 18099501 -101645397 - AluY SINE Alu -17 294 1 312 164 30 0 chr13 18099563 18099630 -101645268 + L1MB2 LINE L1 6096 6164 -7 1944 110 22 54 chr13 18100337 18100654 -101644244 - AluSx SINE Alu 0 312 6 1654 114 30 11 chr13 18101489 18101753 -101643145 - AluSx SINE Alu -1 311 43 372 255 235 0 chr13 18101893 18102046 -101642852 - MIR SINE MIR -2 260 72 2182 54 90 7 chr13 18102503 18102782 -101642116 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 18102915 18102937 -101641961 + AT_rich Low_complexity Low_complexity 1 22 0 478 210 206 0 chr13 18103331 18103564 -101641334 + MER33 DNA MER1_type 44 324 0 23 0 0 0 chr13 18103667 18103690 -101641208 + AT_rich Low_complexity Low_complexity 1 23 0 2488 79 3 0 chr13 18103702 18104007 -101640891 + AluSc SINE Alu 1 306 -3 335 246 43 29 chr13 18105016 18105154 -101639744 - L1MEc LINE L1 -3828 2387 2248 1925 143 7 7 chr13 18105155 18105449 -101639449 - AluJb SINE Alu -14 298 5 276 253 63 0 chr13 18105558 18105637 -101639261 - MER58 DNA MER1_type -2161 259 176 875 215 105 12 chr13 18105697 18106022 -101638876 - L1MEc LINE L1 -4139 2257 1903 21 36 0 0 chr13 18107400 18107428 -101637470 + AT_rich Low_complexity Low_complexity 1 28 0 2344 90 3 10 chr13 18107715 18108025 -101636873 - AluSp SINE Alu -5 308 1 1853 154 0 10 chr13 18108681 18108973 -101635925 - AluJo SINE Alu -20 292 4 641 216 58 16 chr13 18109014 18109204 -101635694 - MER58A DNA MER1_type 0 224 27 1518 142 63 79 chr13 18109567 18109934 -101634964 - MER46B DNA MER2_type 0 236 1 423 204 76 52 chr13 18110113 18110285 -101634613 + MER104 DNA MER2_type 2 177 -3 21 0 0 0 chr13 18110892 18110913 -101633985 + AT_rich Low_complexity Low_complexity 1 21 0 203 27 0 81 chr13 18111158 18111195 -101633703 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 312 207 73 0 chr13 18111386 18111468 -101633430 + L1MC4 LINE L1 1982 6983 -1339 592 178 124 0 chr13 18115280 18115409 -101629489 - MER46C DNA MER2_type -5 333 189 302 165 38 25 chr13 18115483 18115562 -101629336 - MER46C DNA MER2_type -257 81 2 229 272 211 26 chr13 18115883 18115997 -101628901 - L2 LINE L2 0 3272 3138 392 205 13 0 chr13 18116357 18116435 -101628463 + L2 LINE L2 3231 3309 -4 202 324 38 38 chr13 18116693 18116798 -101628100 - MER5A DNA MER1_type -28 161 57 364 224 197 48 chr13 18117290 18117437 -101627461 - MIR SINE MIR -88 174 6 7366 199 104 56 chr13 18117762 18118079 -101626819 - Cheshire DNA MER1_type 0 2420 2120 520 69 0 0 chr13 18118079 18118151 -101626747 + Alu SINE Alu 1 72 -238 7366 199 104 56 chr13 18118151 18120071 -101624827 - Cheshire DNA MER1_type -300 2120 2 2134 120 0 0 chr13 18120119 18120419 -101624479 - AluSx SINE Alu -12 300 1 269 183 33 0 chr13 18120430 18120490 -101624408 + L2 LINE L2 1411 1472 -1842 1310 271 127 28 chr13 18120490 18120735 -101624163 + L2 LINE L2 1646 1865 -1449 1817 137 48 17 chr13 18120735 18121028 -101623870 - AluJb SINE Alu -10 302 1 1310 271 127 28 chr13 18121028 18121317 -101623581 + L2 LINE L2 1865 2233 -1081 215 176 98 0 chr13 18121377 18121428 -101623470 - MIR SINE MIR -44 218 163 257 217 17 0 chr13 18121429 18121489 -101623409 - MER58A DNA MER1_type 0 224 164 2853 103 55 118 chr13 18121495 18121817 -101623081 - LTR12 LTR ERV1 -132 582 316 189 0 0 0 chr13 18121817 18121838 -101623060 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 2853 103 55 118 chr13 18121838 18122136 -101622762 - LTR12 LTR ERV1 -398 316 1 603 166 50 22 chr13 18122143 18122282 -101622616 - MER58C DNA MER1_type -72 143 1 576 216 65 7 chr13 18122305 18122444 -101622454 - MIR SINE MIR -108 154 8 2351 256 152 42 chr13 18122497 18123889 -101621009 + HAL1 LINE L1 249 1794 -713 719 189 18 6 chr13 18123933 18124097 -101620801 + LTR41 LTR ERVL 5 170 -603 479 204 53 29 chr13 18124258 18124465 -101620433 + LTR41 LTR ERVL 566 795 0 296 252 60 66 chr13 18124465 18124783 -101620115 + HAL1 LINE L1 2135 2450 -57 572 111 0 11 chr13 18124799 18124889 -101620009 - Tigger7 DNA MER2_type -7 2484 2396 * 806 222 5 25 chr13 18124887 18125090 -101619808 - Tigger7 DNA MER2_type -466 267 69 2651 139 19 24 chr13 18125178 18125406 -101619492 + L1MB3 LINE L1 5710 5937 -246 2040 137 0 0 chr13 18125406 18125706 -101619192 + AluSx SINE Alu 1 300 -12 2651 139 19 24 chr13 18125706 18125943 -101618955 + L1MB3 LINE L1 5937 6173 -10 25 0 0 0 chr13 18126088 18126113 -101618785 + AT_rich Low_complexity Low_complexity 1 25 0 216 254 175 35 chr13 18126259 18126373 -101618525 - L2 LINE L2 -5 3267 3138 943 176 77 31 chr13 18126876 18127098 -101617800 - MSTD LTR MaLR 0 396 165 1863 142 4 0 chr13 18127926 18128193 -101616705 - AluSx SINE Alu -44 268 1 21 36 0 0 chr13 18128426 18128454 -101616444 + AT_rich Low_complexity Low_complexity 1 28 0 1651 138 28 28 chr13 18128567 18128850 -101616048 - AluJo SINE Alu -29 283 1 233 224 0 0 chr13 18130683 18130732 -101614166 - L3 LINE CR1 -1 1576 1528 565 285 18 35 chr13 18130741 18130810 -101614088 + MER58A DNA MER1_type 1 70 -2350 2317 101 0 0 chr13 18130810 18131107 -101613791 + AluSx SINE Alu 1 297 -15 565 285 18 35 chr13 18131107 18131265 -101613633 + MER58A DNA MER1_type 70 224 0 904 233 134 27 chr13 18132056 18132460 -101612438 + L1ME4a LINE L1 5561 6007 -114 835 279 69 47 chr13 18132549 18132779 -101612119 - L1MEd LINE L1 -4869 1250 1026 381 22 0 0 chr13 18132779 18132825 -101612073 + (TG)n Simple_repeat Simple_repeat 2 47 0 2197 123 0 3 chr13 18132833 18133134 -101611764 - AluSx SINE Alu -12 300 1 835 279 69 47 chr13 18133134 18133403 -101611495 - L1MEd LINE L1 -5099 1020 731 301 375 125 0 chr13 18133538 18133722 -101611176 - L1MEd LINE L1 -5453 666 460 967 256 60 78 chr13 18133892 18134408 -101610490 + L2 LINE L2 2419 2925 -389 2247 107 0 16 chr13 18134483 18134791 -101610107 - AluSg1 SINE Alu -6 303 1 1885 159 7 13 chr13 18134794 18135095 -101609803 - AluJo SINE Alu -7 305 7 1200 251 176 12 chr13 18135171 18135349 -101609549 + L1ME1 LINE L1 5516 5663 -503 973 266 131 38 chr13 18135349 18135822 -101609076 + MLT2B1 LTR ERVL 1 517 -3 1200 251 176 12 chr13 18135822 18136142 -101608756 + L1ME1 LINE L1 5663 6096 -70 234 191 0 0 chr13 18136160 18136207 -101608691 + A-rich Low_complexity Low_complexity 1 47 0 899 172 35 7 chr13 18136212 18136441 -101608457 + AluJb SINE Alu 1 302 -10 1770 147 25 3 chr13 18136442 18136762 -101608136 + AluJb SINE Alu 1 312 0 201 39 0 0 chr13 18136843 18136869 -101608029 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 225 337 69 20 chr13 18137013 18137114 -101607784 - MIR SINE MIR -55 153 48 216 0 0 0 chr13 18137126 18137150 -101607748 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2277 113 0 0 chr13 18137152 18137445 -101607453 - AluSq SINE Alu -20 293 1 252 333 11 0 chr13 18137591 18137678 -101607220 - MIR SINE MIR -117 145 58 254 319 80 35 chr13 18137716 18137829 -101607069 - MIR SINE MIR -55 207 90 236 245 0 0 chr13 18137937 18137986 -101606912 + GA-rich Low_complexity Low_complexity 2 50 0 743 152 49 98 chr13 18138345 18138549 -101606349 + MLT1D LTR MaLR 1 194 -311 446 262 0 0 chr13 18138571 18138674 -101606224 + MLT1D LTR MaLR 387 489 -16 329 220 200 0 chr13 18138958 18139058 -101605840 - MER69 DNA AcHobo -2 2524 2405 350 241 86 0 chr13 18139155 18139271 -101605627 - MER69 DNA AcHobo -2383 143 18 2222 116 0 28 chr13 18139367 18139687 -101605211 + AluSx SINE Alu 1 311 -1 304 190 0 35 chr13 18139694 18139752 -101605146 - L1MC4 LINE L1 -1339 6703 6648 2343 116 0 0 chr13 18140049 18140359 -101604539 - AluSx SINE Alu -2 310 1 1336 173 110 18 chr13 18140478 18140750 -101604148 + AluSg SINE Alu 12 308 -2 917 204 0 17 chr13 18141191 18141367 -101603531 - FRAM SINE Alu -11 165 1 24 53 0 0 chr13 18141480 18141518 -101603380 + AT_rich Low_complexity Low_complexity 1 38 0 1449 158 39 56 chr13 18141956 18142068 -101602830 + AluJb SINE Alu 15 127 -185 197 0 71 0 chr13 18142068 18142096 -101602802 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 1449 158 39 56 chr13 18142096 18142267 -101602631 + AluJb SINE Alu 127 293 -19 2130 89 0 71 chr13 18142470 18142795 -101602103 - AluSx SINE Alu -10 302 1 222 297 22 66 chr13 18143524 18143706 -101601192 + C-rich Low_complexity Low_complexity 1 174 0 773 165 41 47 chr13 18144086 18144235 -101600663 + AluJb SINE Alu 137 286 -26 387 0 0 0 chr13 18144235 18144278 -101600620 + (CA)n Simple_repeat Simple_repeat 2 44 0 773 165 41 47 chr13 18144278 18144298 -101600600 + AluJb SINE Alu 286 305 -7 434 264 110 28 chr13 18144465 18144647 -101600251 + L2 LINE L2 3117 3313 0 313 233 56 33 chr13 18144658 18144748 -101600150 + MIR SINE MIR 58 149 -113 1071 153 98 31 chr13 18144749 18145004 -101599894 + LTR54B LTR ERV1 1 272 -226 3323 82 68 78 chr13 18145005 18145515 -101599383 - MER51A LTR ERV1 -8 626 122 2420 88 0 0 chr13 18145515 18145822 -101599076 - AluSq SINE Alu -6 307 1 3323 82 68 78 chr13 18145822 18145943 -101598955 - MER51A LTR ERV1 -512 122 1 605 248 59 5 chr13 18145945 18146147 -101598751 + LTR54B LTR ERV1 281 493 -5 525 238 63 7 chr13 18146318 18146461 -101598437 - MER21B LTR ERV1 -615 248 98 507 221 9 38 chr13 18146436 18146595 -101598303 - MER21B LTR ERV1 -410 195 12 * 820 161 19 6 chr13 18146600 18146762 -101598136 - L1M3 LINE L1 -714 5466 5303 1115 70 0 0 chr13 18146768 18146897 -101598001 + AluSq/x SINE Alu 7 135 -178 2190 123 0 7 chr13 18146897 18147207 -101597691 + AluSc SINE Alu 1 308 -1 1466 206 79 21 chr13 18147239 18147549 -101597349 - L1 LINE L1 -833 5313 4987 2009 107 68 0 chr13 18147549 18147829 -101597069 - AluSx SINE Alu -13 299 1 1466 206 79 21 chr13 18147829 18147956 -101596942 - L1 LINE L1 -1159 4987 4869 258 217 67 0 chr13 18147956 18148016 -101596882 + L2 LINE L2 3238 3301 -12 196 337 63 21 chr13 18148046 18148141 -101596757 + MIR3 SINE MIR 110 208 0 2066 98 19 63 chr13 18148476 18148792 -101596106 - AluSx SINE Alu -10 302 1 539 278 60 56 chr13 18149105 18149339 -101595559 - L2 LINE L2 0 3313 3079 2323 112 3 3 chr13 18149362 18149674 -101595224 + AluSx SINE Alu 1 312 0 186 133 0 0 chr13 18149736 18149766 -101595132 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 249 220 0 0 chr13 18149766 18149816 -101595082 - L2 LINE L2 0 3313 3264 540 265 177 32 chr13 18150151 18150400 -101594498 + L3 LINE CR1 621 905 -672 183 217 43 0 chr13 18150471 18150517 -101594381 + L3 LINE CR1 902 949 -628 680 225 174 34 chr13 18150562 18150855 -101594043 + L1MC4a LINE L1 7062 7395 -413 2057 105 0 44 chr13 18150973 18151291 -101593607 - AluSx SINE Alu 0 305 1 293 222 16 0 chr13 18151291 18151354 -101593544 + MER5A DNA MER1_type 123 186 -3 1586 145 47 34 chr13 18151932 18152228 -101592670 - AluJo SINE Alu 0 312 13 21 57 0 0 chr13 18152830 18152865 -101592033 + GC_rich Low_complexity Low_complexity 1 35 0 510 264 25 12 chr13 18153212 18153375 -101591523 + MLT1D LTR MaLR 32 196 -309 312 337 10 10 chr13 18153793 18153891 -101591007 - L1ME1 LINE L1 -5 6161 6064 2435 49 0 3 chr13 18154019 18154333 -101590565 + AluSg SINE Alu 1 313 0 291 177 0 0 chr13 18154458 18154520 -101590378 + (CA)n Simple_repeat Simple_repeat 2 63 0 455 251 8 0 chr13 18154532 18154804 -101590094 + (CA)n Simple_repeat Simple_repeat 1 274 0 219 212 0 0 chr13 18154837 18154922 -101589976 + (CA)n Simple_repeat Simple_repeat 2 86 0 530 199 0 11 chr13 18154951 18154969 -101589929 + (CA)n Simple_repeat Simple_repeat 2 19 -161 2132 121 47 44 chr13 18154969 18155332 -101589566 - THE1B LTR MaLR 0 364 1 530 199 0 11 chr13 18155332 18155494 -101589404 + (CA)n Simple_repeat Simple_repeat 19 180 0 501 228 0 0 chr13 18155521 18155688 -101589210 + (CA)n Simple_repeat Simple_repeat 2 168 0 198 0 0 0 chr13 18156492 18156514 -101588384 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 195 260 65 26 chr13 18156515 18156592 -101588306 - L2 LINE L2 -14 3299 3220 1316 127 23 0 chr13 18156746 18156966 -101587932 - MER50 LTR ERV1 -503 231 7 28 48 0 0 chr13 18157373 18157415 -101587483 + AT_rich Low_complexity Low_complexity 1 42 0 2180 150 92 20 chr13 18157415 18157874 -101587024 - L1MB3 LINE L1 -2 6181 5690 390 207 117 18 chr13 18158082 18158193 -101586705 - MIR SINE MIR -111 151 30 2187 103 3 3 chr13 18158698 18159017 -101585881 - AluSc SINE Alu 0 309 1 2098 122 3 14 chr13 18159017 18159313 -101585585 - AluJb SINE Alu -19 293 1 21 0 0 0 chr13 18159316 18159337 -101585561 + AT_rich Low_complexity Low_complexity 1 21 0 2289 159 18 0 chr13 18159828 18160218 -101584680 - L1MB3 LINE L1 -3 6180 5784 1431 139 58 95 chr13 18160220 18160375 -101584523 - AluJo SINE Alu -17 295 136 2436 95 0 13 chr13 18160375 18160692 -101584206 - AluSq SINE Alu 0 313 1 2436 75 3 0 chr13 18160697 18160990 -101583908 - AluSq SINE Alu -19 294 1 1431 139 58 95 chr13 18160990 18161016 -101583882 - AluJo SINE Alu -180 132 107 189 0 0 0 chr13 18161016 18161037 -101583861 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1431 139 58 95 chr13 18161037 18161142 -101583756 - AluJo SINE Alu -205 107 13 257 285 179 66 chr13 18161250 18161401 -101583497 - MIR SINE MIR -12 250 83 1180 130 4 100 chr13 18161845 18162084 -101582814 - AluJo SINE Alu -17 295 80 442 147 54 116 chr13 18164694 18164823 -101580075 + MER105 DNA DNA 29 149 -55 225 260 0 0 chr13 18167596 18167646 -101577252 + CT-rich Low_complexity Low_complexity 4 53 0 449 207 82 67 chr13 18168346 18168554 -101576344 + MER113 DNA MER1_type? 7 217 -304 559 245 130 10 chr13 18168663 18168863 -101576035 + MER113 DNA MER1_type? 257 480 -41 2080 131 0 3 chr13 18169561 18169851 -101575047 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr13 18169851 18169876 -101575022 + AT_rich Low_complexity Low_complexity 1 25 0 253 203 31 16 chr13 18171392 18171456 -101573442 + L1ME4a LINE L1 5615 5679 -442 287 302 114 48 chr13 18171649 18172026 -101572872 + MLT1J LTR MaLR 110 511 0 411 235 176 20 chr13 18172068 18172323 -101572575 + L1ME4a LINE L1 5773 6067 -54 2026 153 3 7 chr13 18172913 18173221 -101571677 - AluJo SINE Alu -5 307 1 1665 188 31 0 chr13 18173879 18174167 -101570731 + AluJo SINE Alu 6 302 -10 211 256 0 0 chr13 18174488 18174531 -101570367 + L2 LINE L2 3271 3313 0 261 0 0 0 chr13 18175035 18175064 -101569834 + (TG)n Simple_repeat Simple_repeat 1 29 0 250 265 364 20 chr13 18176282 18176780 -101568118 - L2 LINE L2 -337 2977 2309 1974 143 17 0 chr13 18177055 18177342 -101567556 - AluSx SINE Alu -20 292 1 4091 54 0 0 chr13 18177959 18178457 -101566441 + L1PA5 LINE L1 5656 6153 -1 317 321 55 36 chr13 18178693 18178858 -101566040 - L1M4 LINE L1 -1410 4736 4569 470 267 158 39 chr13 18178973 18179333 -101565565 - L1M4 LINE L1 -1717 4429 4027 1853 166 0 27 chr13 18179521 18179816 -101565082 - AluJo SINE Alu -20 292 6 307 280 155 7 chr13 18180045 18180316 -101564582 - L1M4 LINE L1 -2639 3507 3197 243 0 0 0 chr13 18180963 18180990 -101563908 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 1636 148 32 46 chr13 18180990 18181274 -101563624 - AluSx SINE Alu -32 280 1 432 308 70 29 chr13 18182083 18182255 -101562643 - MIR3 SINE MIR 0 208 30 1424 162 4 29 chr13 18182561 18182802 -101562096 - AluJo SINE Alu -77 235 1 2240 89 26 26 chr13 18183292 18183605 -101561293 + AluSq SINE Alu 1 313 0 263 318 103 32 chr13 18183827 18183953 -101560945 - L2 LINE L2 -15 3257 3123 277 111 0 0 chr13 18184015 18184051 -101560847 + AluY SINE Alu 140 175 -126 794 31 0 0 chr13 18184051 18184149 -101560749 + AluSg/x SINE Alu 213 310 0 237 235 20 29 chr13 18185464 18185566 -101559332 + (CCCCG)n Simple_repeat Simple_repeat 5 105 0 47 33 0 0 chr13 18187263 18187324 -101557574 + AT_rich Low_complexity Low_complexity 1 61 0 2768 143 40 6 chr13 18187327 18187822 -101557076 + L1MB3 LINE L1 5671 6182 -1 183 222 0 0 chr13 18188305 18188341 -101556557 + L2 LINE L2 3271 3306 -7 2165 105 0 10 chr13 18188501 18188815 -101556083 + AluSx SINE Alu 1 311 -1 2316 88 0 19 chr13 18188929 18189247 -101555651 + AluSq SINE Alu 1 312 -1 1513 131 20 81 chr13 18189445 18189783 -101555115 + AluJb SINE Alu 4 323 0 1748 134 76 0 chr13 18190695 18190985 -101553913 + AluJb SINE Alu 1 312 0 283 314 6 45 chr13 18191258 18191414 -101553484 - MIR SINE MIR -44 218 69 1672 171 3 13 chr13 18191908 18192218 -101552680 + AluJo SINE Alu 5 311 -1 198 342 70 44 chr13 18192897 18193055 -101551843 + L2 LINE L2 319 480 -2834 276 283 58 96 chr13 18193271 18193511 -101551387 + L3 LINE CR1 1008 1238 -339 794 208 134 19 chr13 18193518 18193734 -101551164 - MIR SINE MIR -12 250 10 202 321 0 0 chr13 18193734 18193790 -101551108 + (TG)n Simple_repeat Simple_repeat 1 56 0 212 342 49 71 chr13 18193790 18194056 -101550842 + L3 LINE CR1 1274 1533 -44 1531 148 32 0 chr13 18194424 18194674 -101550224 - AluJb SINE Alu -54 258 1 1936 156 47 0 chr13 18194793 18195113 -101549785 + MER7A DNA MER2_type 14 346 0 440 251 106 58 chr13 18195358 18195565 -101549333 + MIR SINE MIR 46 262 0 377 279 62 37 chr13 18196695 18196856 -101548042 - MER104 DNA Tc2 -3 177 13 3101 208 18 15 chr13 18197209 18198156 -101546742 + L1M3 LINE L1 4629 5583 -600 310 239 33 43 chr13 18200418 18200536 -101544362 + MIR SINE MIR 70 187 -68 1654 162 13 33 chr13 18203021 18203323 -101541575 - AluJo SINE Alu -16 296 1 942 167 0 6 chr13 18205280 18205448 -101539450 - AluJb SINE Alu -17 295 129 2952 132 29 2 chr13 18205907 18206384 -101538514 - L1MB3 LINE L1 -19 6164 5675 945 302 143 8 chr13 18207586 18207950 -101536948 + L3 LINE CR1 436 848 -729 287 106 0 0 chr13 18207968 18208015 -101536883 + Alu SINE Alu 253 299 -1 2023 136 0 7 chr13 18208176 18208484 -101536414 - AluSx SINE Alu -6 306 1 356 276 138 45 chr13 18208497 18208765 -101536133 + L1ME4a LINE L1 5826 6118 -3 260 291 90 8 chr13 18209067 18209201 -101535697 + L3 LINE CR1 1177 1321 -256 229 250 171 0 chr13 18209553 18209629 -101535269 + L2 LINE L2 3184 3272 0 241 247 55 103 chr13 18209797 18209943 -101534955 + MIR SINE MIR 76 214 -48 227 241 175 36 chr13 18210271 18210408 -101534490 - MIR SINE MIR -15 247 92 1660 183 7 13 chr13 18210862 18211168 -101533730 - AluJb SINE Alu -8 304 1 1368 169 0 0 chr13 18211527 18211758 -101533140 + AluJb SINE Alu 1 231 -81 22 0 0 0 chr13 18217298 18217320 -101527578 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 18217460 18217483 -101527415 + GC_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr13 18217678 18217711 -101527187 + GC_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 18218416 18218437 -101526461 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 18220878 18220899 -101523999 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr13 18222127 18222154 -101522744 + (A)n Simple_repeat Simple_repeat 1 27 0 479 214 28 84 chr13 18222332 18222510 -101522388 - MER112 DNA MER1_type -92 168 1 1313 150 127 29 chr13 18223212 18223519 -101521379 - MER44D DNA MER2_type -2 607 1 612 247 66 29 chr13 18223895 18224138 -101520760 - L1MC4a LINE L1 -1850 5958 5707 232 229 52 0 chr13 18224146 18224242 -101520656 + L1MCc LINE L1 19 119 -6304 242 273 27 64 chr13 18224897 18225007 -101519891 + L1MCc LINE L1 1291 1396 -5027 * 3217 237 63 31 chr13 18224995 18225186 -101519712 + L1MCc LINE L1 3044 3227 -3714 1720 140 45 3 chr13 18225186 18225478 -101519420 + AluSx SINE Alu 1 304 -8 3217 237 63 31 chr13 18225478 18226237 -101518661 + L1MCc LINE L1 3227 4048 -2893 1884 193 11 26 chr13 18226237 18226615 -101518283 - MLT1A2 LTR MaLR -2 372 1 3217 237 63 31 chr13 18226615 18226956 -101517942 + L1MCc LINE L1 4048 4377 -2564 764 264 50 4 chr13 18226975 18227201 -101517697 - L1MC4a LINE L1 -2119 5689 5459 2043 87 45 7 chr13 18227695 18227983 -101516915 - AluSx SINE Alu -13 299 1 326 253 71 82 chr13 18228061 18228231 -101516667 + L1MEd LINE L1 3 170 -5949 21 0 0 0 chr13 18229269 18229290 -101515608 + AT_rich Low_complexity Low_complexity 1 21 0 1831 134 26 10 chr13 18229852 18230159 -101514739 + AluSx SINE Alu 1 312 0 216 0 0 0 chr13 18230263 18230287 -101514611 + (CA)n Simple_repeat Simple_repeat 2 25 0 386 295 77 0 chr13 18230714 18230870 -101514028 - L1MC/D LINE L1 -2053 5755 5588 219 266 94 0 chr13 18231162 18231226 -101513672 + MIR SINE MIR 76 145 -63 2993 37 0 3 chr13 18231766 18232120 -101512778 + L1PA3 LINE L1 5803 6155 0 480 275 38 25 chr13 18232563 18232723 -101512175 + MER5A DNA MER1_type 27 188 -1 2051 105 0 3 chr13 18232775 18233061 -101511837 + AluSq SINE Alu 1 285 -28 1094 115 0 0 chr13 18232905 18233061 -101511837 + AluSp SINE Alu 130 344 0 311 68 17 17 chr13 18233061 18233120 -101511778 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 2419 71 0 0 chr13 18233160 18233468 -101511430 + AluY SINE Alu 1 308 -3 187 297 27 54 chr13 18233469 18233543 -101511355 - MER5A DNA MER1_type -55 134 63 1735 157 111 12 chr13 18233580 18233912 -101510986 + MLT1A1 LTR MaLR 1 365 0 282 299 136 38 chr13 18234954 18235299 -101509599 - L2 LINE L2 -4 3268 2890 7338 176 113 113 chr13 18235458 18235538 -101509360 + L1MD1 LINE L1 276 354 -6186 2178 79 3 3 chr13 18235538 18235830 -101509068 + AluSc SINE Alu 1 292 -17 7338 176 113 113 chr13 18235830 18236439 -101508459 + L1MD1 LINE L1 354 961 -5579 2015 125 0 13 chr13 18236439 18236750 -101508148 - AluSq SINE Alu -6 307 1 7338 176 113 113 chr13 18236750 18237433 -101507465 + L1MD1 LINE L1 961 1642 -4898 1381 152 4 61 chr13 18237433 18237696 -101507202 + AluSx SINE Alu 1 248 -64 7338 176 113 113 chr13 18237696 18238899 -101505999 + L1MD1 LINE L1 1642 3126 -3414 2200 200 29 51 chr13 18238921 18239467 -101505431 - MER74A LTR ERVL -24 534 1 1825 215 47 31 chr13 18239467 18242806 -101502092 + L1MD1 LINE L1 3126 6636 0 494 219 83 49 chr13 18242844 18243049 -101501849 + L1MC5 LINE L1 7655 7866 -95 364 266 65 32 chr13 18243092 18243216 -101501682 + MIR SINE MIR 2 129 -133 566 61 24 0 chr13 18243219 18243301 -101501597 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 2263 94 3 0 chr13 18243312 18243620 -101501278 - AluSx SINE Alu -3 309 1 341 213 150 0 chr13 18243622 18243702 -101501196 + MIR SINE MIR 101 192 -70 1295 226 20 33 chr13 18243870 18244176 -101500722 - AluJo SINE Alu 0 302 1 1624 173 19 25 chr13 18244472 18244790 -101500108 - L1MA10 LINE L1 -593 5741 5426 2831 178 21 22 chr13 18244790 18245369 -101499529 + L1MA10 LINE L1 5755 6333 -1 2134 128 0 0 chr13 18245548 18245860 -101499038 + AluSx SINE Alu 1 312 0 360 234 81 27 chr13 18245917 18246028 -101498870 + L1MC5 LINE L1 7662 7778 -183 2205 77 0 13 chr13 18248346 18248644 -101496254 + AluY SINE Alu 1 294 -17 2284 174 31 2 chr13 18249828 18250248 -101494650 - L1MB2 LINE L1 -150 6021 5590 193 323 98 45 chr13 18250281 18250414 -101494484 + L3 LINE CR1 137 276 -1301 221 350 136 14 chr13 18250858 18251072 -101493826 + L3 LINE CR1 1268 1507 -70 2384 68 0 3 chr13 18253136 18253446 -101491452 - AluY SINE Alu -2 309 1 243 0 0 0 chr13 18253786 18253813 -101491085 + (A)n Simple_repeat Simple_repeat 1 27 0 1601 141 40 59 chr13 18253813 18254117 -101490781 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 18254455 18254476 -101490422 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr13 18256863 18256905 -101487993 + GC_rich Low_complexity Low_complexity 1 42 0 1999 95 3 7 chr13 18258119 18258445 -101486453 - AluSx SINE Alu 0 312 6 2040 154 12 86 chr13 18259178 18259606 -101485292 - MSTD LTR MaLR 0 396 1 3775 227 101 104 chr13 18259618 18259941 -101484957 - MSTB-int LTR MaLR -14 1637 1315 2381 172 49 5 chr13 18259941 18260009 -101484889 - MSTB LTR MaLR 0 426 362 1845 135 6 32 chr13 18260009 18260320 -101484578 + AluJo SINE Alu 1 303 -9 2381 172 49 5 chr13 18260320 18260659 -101484239 - MSTB LTR MaLR -64 362 1 3775 227 101 104 chr13 18260659 18261415 -101483483 - MSTB-int LTR MaLR -336 1315 562 2264 66 0 3 chr13 18261415 18261703 -101483195 - AluY SINE Alu -15 296 10 3775 227 101 104 chr13 18261703 18262259 -101482639 - MSTB-int LTR MaLR -1089 562 6 1582 204 163 12 chr13 18262275 18262751 -101482147 - L1MC3 LINE L1 -373 7412 6856 189 0 0 0 chr13 18262751 18262772 -101482126 + (TG)n Simple_repeat Simple_repeat 2 22 0 1582 204 163 12 chr13 18262772 18262866 -101482032 - L1MC3 LINE L1 -929 6856 6778 336 290 14 69 chr13 18262899 18263044 -101481854 + L2 LINE L2 3136 3272 0 1448 182 62 3 chr13 18264673 18264997 -101479901 - MLT2D LTR ERVL -52 362 20 207 0 0 0 chr13 18265630 18265653 -101479245 + (TTG)n Simple_repeat Simple_repeat 2 24 0 209 294 109 34 chr13 18266895 18267014 -101477884 + MIR SINE MIR 108 235 -27 1877 231 2 23 chr13 18267572 18268043 -101476855 + L1M4 LINE L1 4867 5327 -819 22641 54 13 3 chr13 18268045 18270836 -101474062 + L1P LINE L1 4 2823 -3323 1787 155 7 3 chr13 18274097 18274407 -101470491 - AluJb SINE Alu -1 311 1 334 246 26 18 chr13 18274741 18274855 -101470043 - L1MEc LINE L1 -3108 3107 2993 57 28 0 0 chr13 18274860 18274931 -101469967 + AT_rich Low_complexity Low_complexity 1 71 0 2651 247 31 67 chr13 18274936 18275339 -101469559 - L1MEc LINE L1 -3216 2999 2583 1721 146 34 10 chr13 18275339 18275633 -101469265 - AluSx SINE Alu -3 309 9 2651 247 31 67 chr13 18275633 18276225 -101468673 - L1MEc LINE L1 -3632 2583 1971 789 122 257 0 chr13 18276225 18276345 -101468553 - MER5A DNA MER1_type -1 188 100 234 0 0 0 chr13 18276345 18276371 -101468527 + (CTG)n Simple_repeat Simple_repeat 1 26 0 789 122 257 0 chr13 18276371 18276398 -101468500 - MER5A DNA MER1_type -89 100 3 2651 247 31 67 chr13 18276398 18276427 -101468471 - L1MEc LINE L1 -4244 1971 1942 2077 121 0 9 chr13 18276427 18276742 -101468156 - AluSx SINE Alu 0 312 1 2651 247 31 67 chr13 18276742 18277108 -101467790 - L1MEc LINE L1 -4273 1942 1726 2175 97 0 0 chr13 18277108 18277396 -101467502 - AluSx SINE Alu -24 288 1 2651 247 31 67 chr13 18277396 18277543 -101467355 - L1MEc LINE L1 -4489 1726 1575 2373 161 50 10 chr13 18277935 18278339 -101466559 - MSTB LTR MaLR -4 422 3 351 293 78 42 chr13 18279919 18280086 -101464812 - MIR SINE MIR -30 232 60 2241 97 0 3 chr13 18280228 18280527 -101464371 + AluSx SINE Alu 1 298 -14 1221 138 0 0 chr13 18280732 18280921 -101463977 - AluSg/x SINE Alu -4 308 120 2009 125 0 0 chr13 18280931 18281219 -101463679 - AluSx SINE Alu -22 290 3 530 221 137 16 chr13 18282552 18282742 -101462156 - MLT1H1 LTR MaLR 0 555 343 270 315 54 36 chr13 18283056 18283167 -101461731 - MIR SINE MIR -69 139 27 380 293 0 45 chr13 18283191 18283324 -101461574 - MARNA DNA Mariner -227 359 233 180 227 0 23 chr13 18283518 18283562 -101461336 + MIR3 SINE MIR 144 186 -22 1424 158 120 19 chr13 18283937 18283948 -101460950 - AluJo SINE Alu -9 293 285 194 0 39 0 chr13 18283948 18283974 -101460924 + (GA)n Simple_repeat Simple_repeat 1 27 0 1424 158 120 19 chr13 18283974 18284228 -101460670 - AluJo SINE Alu -17 285 1 182 36 0 36 chr13 18284284 18284312 -101460586 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 5681 147 30 13 chr13 18284538 18285329 -101459569 - L1MA4 LINE L1 -1 6299 5487 2498 60 3 0 chr13 18285329 18285628 -101459270 - AluY SINE Alu -11 300 1 5681 147 30 13 chr13 18285628 18285813 -101459085 - L1MA4 LINE L1 -813 5487 5307 330 320 10 0 chr13 18285957 18286054 -101458844 - L2 LINE L2 0 3272 3175 2389 97 3 0 chr13 18286800 18287111 -101457787 - AluSq SINE Alu -1 312 1 226 203 54 27 chr13 18287303 18287377 -101457521 - MIR SINE MIR -103 159 84 29 0 0 0 chr13 18287380 18287409 -101457489 + AT_rich Low_complexity Low_complexity 1 29 0 1032 104 8 0 chr13 18287409 18287543 -101457355 - AluJo SINE Alu -177 135 1 2377 99 3 0 chr13 18287909 18288221 -101456677 + AluSp SINE Alu 1 313 0 1047 262 52 56 chr13 18288290 18288794 -101456104 - HAL1 LINE L1 -4 2503 2002 414 276 99 17 chr13 18288960 18289141 -101455757 - HAL1 LINE L1 -702 1805 1610 261 321 114 15 chr13 18289139 18289270 -101455628 - HAL1 LINE L1 -2336 171 28 * 320 319 43 0 chr13 18289402 18289518 -101455380 - MIR3 SINE MIR -74 134 14 514 100 0 12 chr13 18289923 18290003 -101454895 + MADE1 DNA Mariner 1 79 -1 829 199 0 23 chr13 18292254 18292425 -101452473 + FRAM SINE Alu 8 174 -2 2312 106 0 3 chr13 18292679 18292982 -101451916 - AluSx SINE Alu -10 302 1 2432 63 0 13 chr13 18293391 18293692 -101451206 + AluY SINE Alu 1 297 -14 382 279 110 0 chr13 18293780 18293934 -101450964 - MIR SINE MIR 0 262 92 669 232 43 53 chr13 18294440 18294647 -101450251 - MER3 DNA MER1_type -2 207 3 2514 81 0 3 chr13 18294703 18295010 -101449888 + AluSg SINE Alu 1 306 -4 180 0 0 0 chr13 18295377 18295397 -101449501 + (TC)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr13 18296066 18296094 -101448804 + AT_rich Low_complexity Low_complexity 1 28 0 922 213 32 101 chr13 18296995 18297333 -101447565 + MLT1J LTR MaLR 25 339 -172 267 107 125 0 chr13 18297643 18297699 -101447199 - Alu SINE Alu 0 301 239 1556 226 3 0 chr13 18298796 18299106 -101445792 + MER82 DNA MER2_type 2 312 -341 375 272 123 73 chr13 18299111 18299185 -101445713 + L1M4 LINE L1 4584 4653 -1493 1654 153 62 7 chr13 18299185 18299345 -101445553 + L1MA9 LINE L1 5987 6137 -175 387 0 0 0 chr13 18299345 18299388 -101445510 + (CA)n Simple_repeat Simple_repeat 2 44 0 1654 153 62 7 chr13 18299388 18299535 -101445363 + L1MA9 LINE L1 6137 6311 -1 375 272 123 73 chr13 18299535 18300014 -101444884 + L1M4 LINE L1 4653 5176 -970 2527 68 0 7 chr13 18300014 18300322 -101444576 + AluY SINE Alu 1 306 -5 375 272 123 73 chr13 18300322 18300407 -101444491 + L1M4 LINE L1 5176 5255 -891 1085 151 17 6 chr13 18300412 18300584 -101444314 + AluSg/x SINE Alu 135 308 -2 800 180 9 104 chr13 18300659 18300870 -101444028 - MLT1B LTR MaLR -197 193 3 1493 161 31 93 chr13 18300889 18301120 -101443778 - MLT1B-int LTR MaLR -17 1718 1511 2730 185 4 0 chr13 18301120 18301601 -101443297 + L1PB4 LINE L1 5669 6151 -5 1493 161 31 93 chr13 18301601 18301693 -101443205 - MLT1B-int LTR MaLR -224 1511 1415 2017 141 7 7 chr13 18301859 18302163 -101442735 + AluSx SINE Alu 1 304 -8 301 342 7 7 chr13 18302273 18302425 -101442473 + L1MC/D LINE L1 4925 5076 -1070 3847 156 62 40 chr13 18302443 18302721 -101442177 + L1PA16 LINE L1 4683 4953 -1213 3847 129 52 53 chr13 18302721 18303455 -101441443 + L1PA16 LINE L1 5431 6166 0 3847 156 62 40 chr13 18303455 18303790 -101441108 + L1PA16 LINE L1 4953 6166 0 1804 160 3 0 chr13 18303972 18304286 -101440612 - AluSx SINE Alu 0 315 1 23 0 0 0 chr13 18305577 18305600 -101439298 + AT_rich Low_complexity Low_complexity 1 23 0 2185 104 7 0 chr13 18305685 18305964 -101438934 + AluSq SINE Alu 1 281 -32 395 191 0 64 chr13 18305976 18306070 -101438828 - L1MC4 LINE L1 -1339 6703 6616 276 229 0 0 chr13 18306077 18306160 -101438738 + (TA)n Simple_repeat Simple_repeat 1 83 0 249 292 42 21 chr13 18306219 18306315 -101438583 + MER5B DNA MER1_type 1 98 -80 280 213 113 43 chr13 18306564 18306705 -101438193 + L1MC/D LINE L1 5317 5467 -2341 2689 118 14 21 chr13 18306730 18307164 -101437734 - L1PA13 LINE L1 0 6163 5733 356 131 16 0 chr13 18307164 18307225 -101437673 + MER52C LTR ERV1 1 62 -1216 6016 122 101 28 chr13 18307225 18308264 -101436634 + MER52C LTR ERV1 164 1278 0 4028 98 17 41 chr13 18308265 18308848 -101436050 + MER52C-int LTR ERV1 3 571 -6520 4154 166 28 4 chr13 18308948 18310210 -101434688 + MER52C-int LTR ERV1 1775 3204 -3887 3972 170 24 15 chr13 18310229 18310910 -101433988 + MER52C-int LTR ERV1 807 1493 -5598 697 139 70 0 chr13 18310930 18311045 -101433853 + MER52C-int LTR ERV1 1006 1128 -4818 2506 167 54 32 chr13 18311049 18311716 -101433182 + MER52C-int LTR ERV1 1416 1990 -3596 3182 148 75 8 chr13 18311761 18312263 -101432635 + MER52C-int LTR ERV1 692 1259 -6557 360 0 0 0 chr13 18312263 18312303 -101432595 + (TG)n Simple_repeat Simple_repeat 2 41 0 3182 148 75 8 chr13 18312303 18312423 -101432475 + MER52C-int LTR ERV1 1259 1369 -6447 260 128 0 0 chr13 18312401 18312448 -101432450 + MER52C-int LTR ERV1 1064 1110 -7010 * 2655 203 157 68 chr13 18312447 18313612 -101431286 + MER52C-int LTR ERV1 4480 5748 -1670 299 83 62 0 chr13 18313610 18313658 -101431240 + MER52C-int LTR ERV1 5976 6026 -1179 * 1408 91 10 20 chr13 18313660 18313858 -101431040 + MER52C-int LTR ERV1 6892 7087 -4 1398 146 64 6 chr13 18313858 18314127 -101430771 + MER52C LTR ERV1 23 390 -888 3760 109 9 13 chr13 18314130 18315113 -101429785 - L1P4 LINE L1 -427 5736 4761 584 298 58 4 chr13 18315158 18315400 -101429498 + L1ME4a LINE L1 5574 5828 -293 352 264 98 12 chr13 18315555 18315718 -101429180 - MIR SINE MIR 0 262 86 27 0 0 0 chr13 18315895 18315922 -101428976 + AT_rich Low_complexity Low_complexity 1 27 0 205 273 0 0 chr13 18315991 18316035 -101428863 + (TG)n Simple_repeat Simple_repeat 2 45 0 214 227 0 0 chr13 18316262 18316306 -101428592 + MIR3 SINE MIR 158 201 -7 3412 168 28 23 chr13 18316443 18317098 -101427800 - L1MB3 LINE L1 -3 6180 5523 2100 166 19 27 chr13 18317162 18317643 -101427255 + pTR5 LTR ERV1 738 1214 -1224 456 306 56 49 chr13 18318394 18318678 -101426220 - L1ME1 LINE L1 -2 6164 5879 263 178 0 40 chr13 18319017 18319118 -101425780 + (TA)n Simple_repeat Simple_repeat 1 97 0 1604 171 43 20 chr13 18319993 18320298 -101424600 - AluJo SINE Alu 0 312 1 37 39 0 0 chr13 18320886 18320937 -101423961 + AT_rich Low_complexity Low_complexity 1 51 0 780 247 43 28 chr13 18321516 18321771 -101423127 - MLT1C LTR MaLR -1 466 208 972 267 102 27 chr13 18321773 18321843 -101423055 - HAL1 LINE L1 -423 2084 2021 198 0 0 0 chr13 18321843 18321865 -101423033 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 972 267 102 27 chr13 18321865 18322243 -101422655 - HAL1 LINE L1 -486 2021 1602 555 222 31 17 chr13 18322310 18322527 -101422371 - L1MCc LINE L1 -4890 1533 1434 803 239 0 0 chr13 18322527 18322686 -101422212 - FRAM SINE Alu -3 163 5 555 222 31 17 chr13 18322686 18322715 -101422183 - L1MCc LINE L1 -4989 1434 1407 2020 261 104 59 chr13 18322725 18323838 -101421060 - L1MCc LINE L1 -5238 1185 23 259 235 289 51 chr13 18323845 18324160 -101420738 - HAL1 LINE L1 -1004 1503 1114 263 269 60 101 chr13 18324172 18324321 -101420577 - L1M4 LINE L1 -5692 850 708 304 302 55 33 chr13 18324420 18324602 -101420296 - L1M4 LINE L1 -6319 223 38 525 274 106 43 chr13 18324641 18324991 -101419907 - HAL1 LINE L1 -1398 1109 738 379 265 53 15 chr13 18325049 18325181 -101419717 - HAL1 LINE L1 -1966 541 405 380 243 48 90 chr13 18325334 18325523 -101419375 - HAL1 LINE L1 -2311 196 16 182 356 79 10 chr13 18327134 18327235 -101417663 + L2 LINE L2 3137 3244 -28 203 289 66 42 chr13 18327535 18327661 -101417237 - MIR SINE MIR -68 140 35 515 263 96 17 chr13 18327871 18328092 -101416806 - MIR SINE MIR -18 244 3 432 293 45 0 chr13 18329004 18329137 -101415761 - L2 LINE L2 0 3272 3134 2294 116 3 0 chr13 18329155 18329466 -101415432 + AluSx SINE Alu 1 312 0 1604 265 64 49 chr13 18329937 18330878 -101414020 + L1MC5 LINE L1 6096 7072 -889 2799 159 37 33 chr13 18330905 18331396 -101413502 - LTR42 LTR ERVL 0 495 3 898 229 112 46 chr13 18331411 18331847 -101413051 + L1MC5 LINE L1 7269 7733 -228 255 309 73 15 chr13 18332331 18332535 -101412363 + L1MEc LINE L1 898 1113 -6025 418 288 69 2 chr13 18332910 18333128 -101411770 + L1MEc LINE L1 1379 1680 -5323 307 361 0 0 chr13 18333178 18333311 -101411587 + LTR16B LTR ERVL 1 133 -331 3151 264 72 23 chr13 18333318 18334600 -101410298 + L1MEc LINE L1 2295 3512 -3445 1993 157 3 10 chr13 18334600 18334913 -101409985 - AluSx SINE Alu -1 311 1 3151 264 72 23 chr13 18334913 18335568 -101409330 + L1MEc LINE L1 3512 4422 -2535 2049 116 34 7 chr13 18335568 18335861 -101409037 + AluSx SINE Alu 1 301 -11 3151 264 72 23 chr13 18335861 18336037 -101408861 + L1MEc LINE L1 4422 4588 -2369 263 233 8 42 chr13 18336105 18336225 -101408673 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 25 0 0 0 chr13 18336576 18336601 -101408297 + AT_rich Low_complexity Low_complexity 1 25 0 434 286 7 7 chr13 18337288 18337435 -101407463 + LTR16B LTR ERVL 1 147 -317 417 266 89 13 chr13 18337465 18337623 -101407275 + LTR16B LTR ERVL 293 462 -2 230 272 93 107 chr13 18337976 18338417 -101406481 - L2 LINE L2 -666 2648 2214 891 128 8 8 chr13 18340984 18341109 -101403789 + AluSq/x SINE Alu 1 125 -188 201 147 0 0 chr13 18341968 18342002 -101402896 + (TCCCC)n Simple_repeat Simple_repeat 5 38 0 2023 129 7 0 chr13 18342007 18342285 -101402613 - AluSx SINE Alu -32 280 1 6324 156 36 13 chr13 18342569 18343624 -101401274 + ERVL-D LTR ERVL 3806 4884 -880 2968 154 31 19 chr13 18343624 18344164 -101400734 + ERVL-D LTR ERVL 5211 5757 -7 1403 204 143 30 chr13 18344164 18344536 -101400362 + MLT2D LTR ERVL 1 414 0 2434 82 0 3 chr13 18344630 18344935 -101399963 - AluY SINE Alu -7 304 1 489 234 113 63 chr13 18346192 18346431 -101398467 - MER112 DNA MER1_type -7 253 3 3050 171 49 4 chr13 18346756 18347287 -101397611 - MER41D LTR ERV1 -2 555 1 413 193 61 35 chr13 18347545 18347659 -101397239 + MER21B LTR ERV1 690 806 -57 1828 194 21 5 chr13 18347686 18348063 -101396835 + L1MB4 LINE L1 5792 6174 -6 349 200 0 0 chr13 18348118 18348183 -101396715 + L1MB8 LINE L1 6113 6177 -1 584 81 11 0 chr13 18348856 18348943 -101395955 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 1806 166 23 3 chr13 18348943 18349244 -101395654 - AluSx SINE Alu -5 307 1 2786 127 27 22 chr13 18349356 18349601 -101395297 + HUERS-P2 LTR ERV1 2187 2429 -659 2066 125 7 14 chr13 18349601 18349898 -101395000 + AluSq SINE Alu 1 295 -18 2786 127 27 22 chr13 18349898 18350471 -101394427 + HUERS-P2 LTR ERV1 2429 3061 -27 716 101 18 18 chr13 18350482 18350591 -101394307 - MER41D LTR ERV1 -448 109 1 3639 149 77 73 chr13 18350690 18351470 -101393428 + LTR1 LTR ERV1 3 785 0 189 355 47 0 chr13 18352454 18352561 -101392337 - L2 LINE L2 0 3272 3161 18438 93 2 3 chr13 18352894 18356358 -101388540 + L1PA8 LINE L1 2670 6165 -7 21 0 0 0 chr13 18356711 18356732 -101388166 + AT_rich Low_complexity Low_complexity 1 21 0 321 276 83 26 chr13 18357782 18357938 -101386960 - L3 LINE CR1 -289 1288 1124 266 353 0 10 chr13 18358036 18358138 -101386760 - L3 LINE CR1 -712 865 765 298 295 32 11 chr13 18358206 18358301 -101386597 + MIR SINE MIR 2 98 -164 1335 163 23 9 chr13 18358654 18359043 -101385855 - LTR32 LTR ERVL 0 471 15 254 340 52 0 chr13 18359677 18359774 -101385124 - L3 LINE CR1 -1134 443 342 288 177 62 73 chr13 18360108 18360204 -101384694 - L1ME4a LINE L1 -63 6058 5964 953 249 94 57 chr13 18360234 18360428 -101384470 - HAL1b LINE L1 0 1348 1163 2263 57 17 37 chr13 18360428 18360728 -101384170 + AluSg SINE Alu 1 294 -16 953 249 94 57 chr13 18360728 18361096 -101383802 - HAL1b LINE L1 -185 1163 765 682 220 83 111 chr13 18361251 18361389 -101383509 - HAL1b LINE L1 -883 465 325 2047 146 0 16 chr13 18361389 18361704 -101383194 - AluSx SINE Alu -2 310 1 682 220 83 111 chr13 18361704 18361915 -101382983 - HAL1b LINE L1 -1023 325 126 1661 142 31 52 chr13 18363023 18363347 -101381551 + L1MB3 LINE L1 5655 5971 -212 970 161 30 13 chr13 18363391 18363600 -101381298 + L1MB3 LINE L1 5928 6142 -41 2364 98 0 9 chr13 18363600 18363915 -101380983 + AluSx SINE Alu 1 312 0 192 111 333 22 chr13 18364015 18364105 -101380793 - MER5A DNA MER1_type -68 121 4 488 302 47 6 chr13 18364993 18365165 -101379733 - MER112 DNA MER1_type -7 253 75 2776 13 0 13 chr13 18366246 18366553 -101378345 - AluYa5 SINE Alu -8 303 1 201 157 61 5 chr13 18366736 18366942 -101377956 + (TA)n Simple_repeat Simple_repeat 1 217 0 258 241 19 0 chr13 18367035 18367089 -101377809 + L2 LINE L2 3218 3272 0 1091 185 0 24 chr13 18367131 18367336 -101377562 - AluJo SINE Alu -17 295 96 216 336 82 33 chr13 18367353 18367475 -101377423 + MIR3 SINE MIR 33 160 -48 180 321 9 66 chr13 18367886 18367992 -101376906 - MIR SINE MIR -77 185 86 738 203 0 0 chr13 18368476 18368609 -101376289 + AluJ SINE Alu 1 133 -169 269 227 16 16 chr13 18368609 18368651 -101376247 + AluJ/F(R)AM SINE Alu 134 150 -152 250 231 0 0 chr13 18368651 18368703 -101376195 + LTR30 LTR ERV1 1 52 -670 1140 143 71 26 chr13 18368703 18368962 -101375936 + LTR12 LTR ERV1 55 1982 -456 304 120 0 0 chr13 18368983 18369033 -101375865 + LTR12 LTR ERV1 228 277 -437 227 262 0 36 chr13 18369033 18369117 -101375781 + LTR30 LTR ERV1 544 624 -98 564 124 12 99 chr13 18369119 18369244 -101375654 + LTR12 LTR ERV1 364 714 0 775 114 16 16 chr13 18369244 18369367 -101375531 + AluSg/x SINE Alu 172 294 -18 185 246 15 15 chr13 18370302 18370367 -101374531 + MIR3 SINE MIR 106 170 -38 443 130 0 26 chr13 18370630 18370707 -101374191 - MADE1 DNA Mariner -5 75 1 378 231 142 8 chr13 18370963 18371097 -101373801 + L1MB7 LINE L1 5564 5715 -406 368 252 79 8 chr13 18371599 18371726 -101373172 + L1ME4a LINE L1 5984 6119 -2 1780 186 28 25 chr13 18372026 18372387 -101372511 + MLT1A1 LTR MaLR 4 365 0 187 336 92 0 chr13 18372939 18373058 -101371840 - L2 LINE L2 0 3272 3143 944 223 119 86 chr13 18373876 18374329 -101370569 + MLT1J LTR MaLR 25 492 -19 267 107 125 0 chr13 18374525 18374581 -101370317 - Alu SINE Alu 0 300 238 418 288 69 2 chr13 18375373 18375591 -101369307 + L1ME LINE L1 1379 1680 -5323 307 361 0 0 chr13 18375641 18375774 -101369124 + LTR16B LTR ERVL 1 133 -331 1793 276 53 19 chr13 18375781 18377061 -101367837 + L1ME LINE L1 2295 3638 -3319 1993 157 3 10 chr13 18377066 18377379 -101367519 - AluSx SINE Alu -1 311 1 23 0 0 0 chr13 18377463 18377486 -101367412 + AT_rich Low_complexity Low_complexity 1 23 0 276 287 0 0 chr13 18378105 18378262 -101366636 + (CA)n Simple_repeat Simple_repeat 1 157 0 501 329 2 8 chr13 18378291 18378794 -101366104 + (CA)n Simple_repeat Simple_repeat 1 499 0 2049 224 18 2 chr13 18380433 18380885 -101364013 + L1MB7 LINE L1 5726 6184 0 540 268 47 54 chr13 18381711 18382096 -101362802 + L2 LINE L2 1707 2172 -1142 860 274 77 24 chr13 18382393 18382839 -101362059 + L1MEc LINE L1 895 1389 -4921 2264 108 7 0 chr13 18382839 18383145 -101361753 + AluSq SINE Alu 1 308 -5 860 274 77 24 chr13 18383145 18383319 -101361579 + L1MEc LINE L1 1389 1552 -4758 851 271 65 63 chr13 18383322 18383750 -101361148 + L2 LINE L2 2282 2710 -604 799 279 217 9 chr13 18383851 18384334 -101360564 + L2 LINE L2 2687 3309 -4 197 224 15 104 chr13 18384861 18384928 -101359970 - L2 LINE L2 -9 3304 3244 286 358 83 8 chr13 18384934 18385054 -101359844 - MER5A DNA MER1_type 0 189 61 419 52 17 0 chr13 18385370 18385428 -101359470 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 1264 214 43 23 chr13 18385433 18385732 -101359166 - L1MC2 LINE L1 -56 6288 5984 1583 157 39 39 chr13 18386103 18386409 -101358489 + AluJo SINE Alu 1 306 -6 2528 199 42 7 chr13 18388034 18388384 -101356514 - L1MB7 LINE L1 0 6184 5807 2000 120 14 7 chr13 18388384 18388676 -101356222 - AluSx SINE Alu -14 298 5 2528 199 42 7 chr13 18388676 18388872 -101356026 - L1MB7 LINE L1 -377 5807 5619 2713 152 24 35 chr13 18389254 18389747 -101355151 + LTR45B LTR ERV1 2 489 0 274 221 191 0 chr13 18389952 18390020 -101354878 - L2 LINE L2 -26 3287 3207 350 250 68 57 chr13 18390970 18391073 -101353825 - MER5B DNA MER1_type 0 178 71 1945 138 6 6 chr13 18391073 18391384 -101353514 - AluY SINE Alu 0 311 1 350 250 68 57 chr13 18391384 18391456 -101353442 - MER5B DNA MER1_type -107 71 1 208 287 0 0 chr13 18392108 18392216 -101352682 + (GGGTG)n Simple_repeat Simple_repeat 4 111 0 387 0 0 0 chr13 18394507 18394550 -101350348 + (TG)n Simple_repeat Simple_repeat 2 44 0 261 0 0 0 chr13 18394550 18394579 -101350319 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1361 150 0 5 chr13 18394605 18394818 -101350080 + AluSq SINE Alu 1 212 -101 444 50 0 17 chr13 18394818 18394878 -101350020 + AluSq/x SINE Alu 78 136 -177 2116 114 0 3 chr13 18394879 18395176 -101349722 + AluSx SINE Alu 3 298 -14 2147 116 10 0 chr13 18395912 18396222 -101348676 + AluSp SINE Alu 1 313 0 2016 111 19 32 chr13 18396272 18396588 -101348310 + AluSx SINE Alu 1 312 0 27 29 0 0 chr13 18396631 18396665 -101348233 + AT_rich Low_complexity Low_complexity 1 34 0 1990 171 42 46 chr13 18396685 18397117 -101347781 - MSTB1 LTR MaLR -2 430 1 207 0 0 0 chr13 18397642 18397665 -101347233 + (T)n Simple_repeat Simple_repeat 1 23 0 459 189 68 8 chr13 18398248 18398380 -101346518 + L1ME2 LINE L1 5182 5321 -825 475 183 0 0 chr13 18398390 18398472 -101346426 + FLAM_A SINE Alu 42 123 -19 731 210 81 5 chr13 18398505 18398691 -101346207 + L1ME2 LINE L1 5328 5527 -637 1080 195 4 22 chr13 18398691 18398917 -101345981 - AluJo SINE Alu -18 294 73 2171 221 56 43 chr13 18398922 18399532 -101345366 + L1ME2 LINE L1 5535 6152 -12 1090 168 13 35 chr13 18399877 18400109 -101344789 + AluJo SINE Alu 86 312 0 334 286 108 14 chr13 18400865 18401078 -101343820 + L1ME2 LINE L1 5576 5808 -313 188 238 24 0 chr13 18401080 18401122 -101343776 + L2 LINE L2 2348 2390 -924 482 272 209 10 chr13 18401132 18401338 -101343560 + MIR SINE MIR 2 248 -14 1638 177 112 58 chr13 18401338 18401767 -101343131 - LTR47A LTR ERVL 0 452 1 625 258 8 0 chr13 18401781 18401913 -101342985 - MER5B DNA MER1_type -11 167 35 419 315 89 40 chr13 18401916 18402344 -101342554 + L1ME LINE L1 141 589 -5616 1546 260 92 83 chr13 18402547 18402856 -101342042 + L1ME LINE L1 663 968 -5428 2201 88 0 0 chr13 18402856 18403140 -101341758 + AluSx SINE Alu 1 284 -28 1546 260 92 83 chr13 18403140 18404297 -101340601 + L1ME LINE L1 968 2147 -4249 2225 129 51 58 chr13 18404297 18404745 -101340153 + MER65A LTR ERV1 1 445 0 1546 260 92 83 chr13 18404745 18404876 -101340022 + L1ME LINE L1 2147 2275 -4121 530 290 94 34 chr13 18404874 18405202 -101339696 + L1ME LINE L1 37 384 -6012 * 1826 174 0 0 chr13 18405435 18405745 -101339153 + AluJb SINE Alu 1 310 -2 2039 257 26 22 chr13 18405752 18406473 -101338425 + L1ME LINE L1 3134 3857 -2358 986 187 5 0 chr13 18406482 18406669 -101338229 + L1ME LINE L1 3973 4160 -2055 604 214 13 120 chr13 18406651 18406968 -101337930 + L1ME2 LINE L1 5881 6163 -1 * 359 314 111 59 chr13 18407099 18407899 -101336999 + L2 LINE L2 2437 3271 -1 21 0 0 0 chr13 18408519 18408540 -101336358 + AT_rich Low_complexity Low_complexity 1 21 0 302 236 39 94 chr13 18408567 18408770 -101336128 + L1ME4a LINE L1 5929 6120 -1 266 319 90 21 chr13 18409242 18409386 -101335512 + MIR SINE MIR 92 245 -17 361 311 57 36 chr13 18409449 18409642 -101335256 - MIR SINE MIR -1 261 65 1241 223 72 50 chr13 18409649 18410106 -101334792 + MLT1C LTR MaLR 1 467 0 185 252 185 50 chr13 18411237 18411356 -101333542 + MIR SINE MIR 128 262 0 2227 107 0 0 chr13 18411533 18411833 -101333065 + AluSq SINE Alu 1 300 -13 240 143 0 0 chr13 18412303 18412345 -101332553 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 277 235 37 25 chr13 18412946 18413027 -101331871 + L1MC5 LINE L1 7844 7925 -36 2459 44 0 7 chr13 18413234 18413531 -101331367 - AluY SINE Alu -16 295 1 567 276 113 22 chr13 18413561 18413836 -101331062 - L1M4 LINE L1 -920 5226 4927 954 179 0 36 chr13 18414020 18414216 -101330682 - AluJb SINE Alu -5 307 119 1840 284 113 30 chr13 18414285 18415466 -101329432 - L1M4 LINE L1 -1559 4587 3309 859 207 35 83 chr13 18415505 18415843 -101329055 - L1MC5 LINE L1 -726 7235 6914 1363 123 107 35 chr13 18415863 18415925 -101328973 - L1PA16 LINE L1 -9 6157 6101 2480 104 19 19 chr13 18415925 18416289 -101328609 + THE1B LTR MaLR 1 364 0 1363 123 107 35 chr13 18416289 18416487 -101328411 - L1PA16 LINE L1 -65 6101 5878 281 314 119 8 chr13 18416736 18416854 -101328044 - L2 LINE L2 -5 3267 3137 223 233 33 17 chr13 18417916 18417976 -101326922 + CT-rich Low_complexity Low_complexity 1 61 0 724 100 40 0 chr13 18418068 18418168 -101326730 - LTR12 LTR ERV1 0 714 611 295 177 70 32 chr13 18418173 18418254 -101326644 - LTR30 LTR ERV1 -75 624 479 1401 106 0 121 chr13 18418254 18418480 -101326418 - LTR12 LTR ERV1 -429 285 94 2268 68 10 0 chr13 18418480 18418773 -101326125 - AluY SINE Alu -15 296 1 1401 106 0 121 chr13 18418773 18418811 -101326087 - LTR12 LTR ERV1 -620 94 53 226 269 0 0 chr13 18418811 18418863 -101326035 - LTR30 LTR ERV1 -670 52 1 448 204 11 0 chr13 18419100 18419188 -101325710 + MER3 DNA MER1_type 1 89 -120 323 295 151 43 chr13 18419218 18419699 -101325199 - L2 LINE L2 -65 3248 2640 391 198 5 43 chr13 18420399 18420586 -101324312 + GA-rich Low_complexity Low_complexity 1 180 0 448 206 15 45 chr13 18420594 18420931 -101323967 + G-rich Low_complexity Low_complexity 1 326 0 326 138 47 39 chr13 18421691 18422116 -101322782 + (CA)n Simple_repeat Simple_repeat 1 428 0 451 184 226 16 chr13 18422285 18422475 -101322423 + MLT1B LTR MaLR 28 257 -133 213 221 95 21 chr13 18422911 18423006 -101321892 - MIR SINE MIR -132 130 29 263 233 0 0 chr13 18423561 18423621 -101321277 + L2 LINE L2 2471 2530 -784 1099 219 39 48 chr13 18423729 18424039 -101320859 + MER58B DNA MER1_type 35 341 0 336 249 230 9 chr13 18424040 18424257 -101320641 + L2 LINE L2 2673 2937 -377 786 205 0 6 chr13 18424497 18424843 -101320055 + (TGG)n Simple_repeat Simple_repeat 1 343 0 343 272 163 14 chr13 18425144 18425291 -101319607 - L1ME4a LINE L1 -7 6114 5946 2171 72 17 10 chr13 18425408 18425698 -101319200 + AluY SINE Alu 1 292 -19 2107 113 23 10 chr13 18426648 18426957 -101317941 - AluSq SINE Alu 0 313 1 223 306 0 0 chr13 18426957 18427019 -101317879 - L2 LINE L2 -10 3303 3242 916 283 76 54 chr13 18427553 18428443 -101316455 + L2 LINE L2 2383 3309 -4 1202 260 68 14 chr13 18428853 18429222 -101315676 + L1MD3 LINE L1 7413 7801 -194 2143 124 3 0 chr13 18430963 18431269 -101313629 - AluSx SINE Alu -5 307 1 22 0 0 0 chr13 18431849 18431871 -101313027 + AT_rich Low_complexity Low_complexity 1 22 0 2024 101 0 4 chr13 18432305 18432581 -101312317 - AluSx SINE Alu -24 288 14 433 251 62 72 chr13 18433199 18433393 -101311505 + L1MEd LINE L1 734 928 -5191 200 59 29 0 chr13 18433671 18433705 -101311193 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2002 122 0 0 chr13 18433709 18433988 -101310910 - AluSx SINE Alu -33 279 1 2163 255 84 36 chr13 18435007 18436464 -101308434 + L1MCc LINE L1 817 2619 -4503 2011 113 0 0 chr13 18436464 18436738 -101308160 + AluSx SINE Alu 3 276 -36 2163 255 84 36 chr13 18436738 18437161 -101307737 + L1MCc LINE L1 2619 3020 -4102 * 2329 201 24 6 chr13 18437160 18437668 -101307230 + L1 LINE L1 4122 4638 -1508 202 208 21 21 chr13 18438528 18438576 -101306322 + L2 LINE L2 3225 3272 0 228 250 98 27 chr13 18438876 18438988 -101305910 + MER103 DNA DNA 46 165 -1 2156 104 0 3 chr13 18440489 18440787 -101304111 + AluSx SINE Alu 1 297 -15 648 26 0 0 chr13 18444110 18444188 -101300710 - L1PA5 LINE L1 -1819 4327 4250 * 5112 121 0 1 chr13 18444187 18444961 -101299937 + L1PA5 LINE L1 4327 5099 -1047 5571 53 1 0 chr13 18444961 18445634 -101299264 + L1PA5 LINE L1 5479 6154 0 770 267 86 0 chr13 18445779 18446011 -101298887 - MIR SINE MIR -3 259 8 269 272 114 88 chr13 18447089 18447361 -101297537 - L3 LINE CR1 -2 1575 1297 309 309 12 12 chr13 18447379 18447463 -101297435 - L3 LINE CR1 -427 1150 1067 259 252 71 31 chr13 18447502 18447629 -101297269 - L1ME4a LINE L1 -21 6100 5969 1523 152 107 9 chr13 18448591 18448919 -101295979 - MER46B DNA MER2_type 0 236 2 2035 102 3 3 chr13 18448980 18449295 -101295603 + AluSx SINE Alu 1 315 0 207 0 0 0 chr13 18449294 18449317 -101295581 + (CA)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr13 18449343 18449365 -101295533 + (TG)n Simple_repeat Simple_repeat 1 22 0 319 263 21 0 chr13 18451175 18451270 -101293628 - L1ME4a LINE L1 -628 5534 5438 1392 187 75 69 chr13 18452971 18453346 -101291552 - MLT2C1 LTR ERVL 0 397 21 2062 107 7 0 chr13 18454377 18454678 -101290220 - AluSp SINE Alu 0 305 3 802 109 109 0 chr13 18454682 18454801 -101290097 - AluSp SINE Alu -181 132 1 441 0 0 0 chr13 18455790 18455839 -101289059 + (TG)n Simple_repeat Simple_repeat 2 50 0 2109 92 7 0 chr13 18455839 18456121 -101288777 - AluY SINE Alu -27 284 1 258 32 0 0 chr13 18456871 18456902 -101287996 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2029 130 0 3 chr13 18457165 18457465 -101287433 + AluSx SINE Alu 1 299 -13 4850 155 35 9 chr13 18457902 18458772 -101286126 - L1 LINE L1 -1521 4625 3734 2216 106 0 0 chr13 18458856 18459157 -101285741 - AluSg SINE Alu -9 301 1 22 0 0 0 chr13 18461363 18461385 -101283513 + AT_rich Low_complexity Low_complexity 1 22 0 670 167 9 0 chr13 18461387 18461495 -101283403 - FLAM_A SINE Alu -33 109 1 236 185 31 15 chr13 18461657 18461722 -101283176 + (CAGAGA)n Simple_repeat Simple_repeat 2 67 0 1835 238 23 34 chr13 18462773 18463263 -101281635 + L1M4 LINE L1 3160 3643 -2503 1345 147 54 0 chr13 18463263 18463487 -101281411 + MER46A DNA MER2_type 1 236 0 1835 238 23 34 chr13 18463487 18463613 -101281285 + L1M4 LINE L1 3643 3769 -2377 257 128 21 0 chr13 18467128 18467175 -101277723 + GA-rich Low_complexity Low_complexity 3 50 0 1807 163 7 0 chr13 18467823 18468112 -101276786 + AluJo SINE Alu 1 291 -21 511 90 13 8 chr13 18468718 18468803 -101276095 + LTR12 LTR ERV1 159 1983 -455 226 111 0 48 chr13 18468911 18468974 -101275924 + (CCCCCA)n Simple_repeat Simple_repeat 5 64 0 226 241 46 35 chr13 18468984 18469071 -101275827 + LTR30 LTR ERV1 556 643 -79 373 147 147 11 chr13 18469073 18469168 -101275730 + LTR12 LTR ERV1 379 486 -228 923 191 43 22 chr13 18469349 18469579 -101275319 + L1MB3 LINE L1 5943 6177 -6 687 216 66 12 chr13 18471353 18471520 -101273378 + FRAM SINE Alu 1 176 0 2165 50 0 0 chr13 18471648 18471909 -101272989 - AluY SINE Alu -14 297 37 196 331 55 24 chr13 18472892 18473019 -101271879 + L2 LINE L2 2869 2999 -273 248 193 70 0 chr13 18473405 18473462 -101271436 + MER5A DNA MER1_type 88 148 -41 426 189 53 0 chr13 18473716 18473811 -101271087 + L1MB8 LINE L1 6078 6177 -1 240 35 0 0 chr13 18473853 18473882 -101271016 + (A)n Simple_repeat Simple_repeat 1 29 0 1472 232 53 48 chr13 18474195 18474718 -101270180 + MER39 LTR ERV1 1 707 0 672 242 21 16 chr13 18475527 18475713 -101269185 + MER5A DNA MER1_type 2 188 -1 2066 134 3 0 chr13 18477724 18478030 -101266868 - AluSx SINE Alu -5 307 1 25 0 0 0 chr13 18478450 18478475 -101266423 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr13 18478611 18478633 -101266265 + AT_rich Low_complexity Low_complexity 1 22 0 2073 107 0 7 chr13 18479067 18479357 -101265541 - AluSx SINE Alu -24 288 1 1675 136 113 3 chr13 18479359 18479660 -101265238 - L1MB2 LINE L1 -34 6137 5804 185 0 0 39 chr13 18479796 18479822 -101265076 + (TTA)n Simple_repeat Simple_repeat 2 26 0 259 258 148 16 chr13 18479916 18479943 -101264955 - L1MA10 LINE L1 -2 6332 6306 2044 174 55 5 chr13 18479943 18480406 -101264492 - L1MB8 LINE L1 -34 6137 5621 813 146 29 23 chr13 18480419 18480590 -101264308 - L1MC3 LINE L1 -3 7782 7611 743 193 0 15 chr13 18481119 18481254 -101263644 - FLAM_A SINE Alu 0 133 1 1947 141 0 3 chr13 18481430 18481734 -101263164 - AluSx SINE Alu -8 304 2 322 269 98 41 chr13 18482282 18482483 -101262415 - MLT1L LTR MaLR -2 610 371 2311 93 0 3 chr13 18483455 18483767 -101261131 + AluSq SINE Alu 1 311 -2 1994 82 20 97 chr13 18484119 18484461 -101260437 + AluYb8 SINE Alu 1 316 -2 400 235 12 0 chr13 18484536 18484617 -101260281 + MER2 DNA MER2_type 1 82 -263 339 164 0 0 chr13 18484617 18484678 -101260220 + CT-rich Low_complexity Low_complexity 3 63 0 2020 126 0 23 chr13 18484680 18484989 -101259909 - AluSq SINE Alu -11 302 1 1443 133 71 16 chr13 18484989 18485244 -101259654 + MER2 DNA MER2_type 71 339 -6 415 218 73 18 chr13 18485261 18485371 -101259527 - MIR SINE MIR -25 237 122 253 238 16 0 chr13 18485958 18486021 -101258877 - Charlie8 DNA MER1_type -2016 401 338 252 286 20 10 chr13 18486116 18486214 -101258684 - Charlie8 DNA MER1_type -2235 182 84 453 245 10 29 chr13 18488201 18488303 -101256595 - L2 LINE L2 0 3313 3214 301 299 0 21 chr13 18488349 18488446 -101256452 + MIR SINE MIR 143 237 -25 1175 115 6 0 chr13 18489033 18489207 -101255691 + AluSg/x SINE Alu 132 306 -6 1537 156 3 65 chr13 18489570 18489708 -101255190 + AluJo SINE Alu 1 111 -201 2366 45 0 0 chr13 18489708 18489994 -101254904 + AluY SINE Alu 1 286 -25 1537 156 3 65 chr13 18489994 18490162 -101254736 + AluJo SINE Alu 111 288 -24 210 316 42 32 chr13 18490171 18490266 -101254632 - L2 LINE L2 -4 3309 3214 272 364 0 17 chr13 18490312 18490430 -101254468 + MIR SINE MIR 143 258 -4 309 278 62 62 chr13 18490488 18490715 -101254183 + L1MCa LINE L1 1864 2090 -4336 208 158 0 53 chr13 18490736 18490793 -101254105 + (TTATA)n Simple_repeat Simple_repeat 1 54 0 1750 171 0 13 chr13 18491270 18491585 -101253313 - AluJb SINE Alu -1 311 1 1650 75 7 121 chr13 18491589 18491894 -101253004 - AluSc SINE Alu -39 270 1 320 286 76 70 chr13 18492103 18492515 -101252383 + L1ME3A LINE L1 5524 6010 -111 21 36 0 0 chr13 18492565 18492593 -101252305 + AT_rich Low_complexity Low_complexity 1 28 0 1908 120 28 10 chr13 18492913 18493204 -101251694 + AluSq SINE Alu 1 296 -17 1012 272 83 17 chr13 18494052 18494401 -101250497 + L1ME1 LINE L1 5790 6161 -5 2143 120 0 0 chr13 18494437 18494738 -101250160 + AluSq SINE Alu 1 301 -12 225 94 0 0 chr13 18495548 18495580 -101249318 + (TG)n Simple_repeat Simple_repeat 1 32 0 1969 193 51 14 chr13 18495693 18496128 -101248770 + L1MA4 LINE L1 5838 6288 -12 816 89 0 0 chr13 18496132 18496244 -101248654 - AluY SINE Alu -6 305 194 1862 152 0 9 chr13 18496334 18496649 -101248249 - AluJb SINE Alu 0 312 1 1996 89 4 0 chr13 18496653 18496924 -101247974 - AluY SINE Alu -39 272 1 21 0 0 0 chr13 18496934 18496955 -101247943 + AT_rich Low_complexity Low_complexity 1 21 0 1360 120 0 0 chr13 18497258 18497449 -101247449 + AluSq SINE Alu 61 251 -62 1055 132 0 6 chr13 18497821 18498004 -101246894 - AluSg/x SINE Alu 0 303 122 185 273 156 0 chr13 18498440 18498517 -101246381 + MIR SINE MIR 124 212 -50 * 190 222 19 56 chr13 18498510 18498564 -101246334 - L2 LINE L2 -27 3245 3194 203 195 91 13 chr13 18499316 18499393 -101245505 + (CATCC)n Simple_repeat Simple_repeat 3 85 0 362 293 9 0 chr13 18500227 18500404 -101244494 + L1ME4a LINE L1 5256 5436 -806 330 222 89 22 chr13 18500504 18500594 -101244304 + L1ME3A LINE L1 6065 6160 -10 2552 48 0 0 chr13 18500632 18500943 -101243955 + AluY SINE Alu 1 311 0 443 260 54 99 chr13 18500954 18501398 -101243500 + L1ME4a LINE L1 5440 5869 -252 4204 109 15 28 chr13 18501592 18502198 -101242700 - L1PA15 LINE L1 0 6165 5566 2375 42 0 3 chr13 18502198 18502486 -101242412 - AluY SINE Alu -7 304 18 4204 109 15 28 chr13 18502486 18502533 -101242365 - L1PA15 LINE L1 -599 5566 5520 1267 157 39 11 chr13 18502727 18503007 -101241891 + MER33 DNA MER1_type 29 316 -8 359 219 61 0 chr13 18503271 18503353 -101241545 - HsTC2 DNA Tc2 -1811 87 1 406 333 76 19 chr13 18503483 18503693 -101241205 + MIR SINE MIR 17 238 -24 360 161 192 77 chr13 18504083 18504253 -101240645 - LTR50 LTR ERVL 0 795 586 230 200 17 17 chr13 18504516 18504576 -101240322 - LTR50 LTR ERVL -731 64 5 198 0 0 0 chr13 18504778 18504800 -101240098 + (TG)n Simple_repeat Simple_repeat 2 23 0 377 183 0 0 chr13 18504931 18505002 -101239896 + T-rich Low_complexity Low_complexity 1 71 0 346 295 28 10 chr13 18505005 18505301 -101239597 + CT-rich Low_complexity Low_complexity 1 301 0 970 104 7 0 chr13 18505515 18505650 -101239248 - AluSq/x SINE Alu -176 136 1 1221 228 48 95 chr13 18505661 18505822 -101239076 - L1MA9 LINE L1 -45 6267 6100 1576 171 3 53 chr13 18505822 18506143 -101238755 + AluJb SINE Alu 1 305 -7 1221 228 48 95 chr13 18506143 18506499 -101238399 - L1MA9 LINE L1 -212 6100 5774 2943 213 134 49 chr13 18506505 18507534 -101237364 + L1M4 LINE L1 4025 5171 -975 1624 195 13 3 chr13 18507534 18507841 -101237057 + AluJo SINE Alu 1 310 -2 2943 213 134 49 chr13 18507841 18508004 -101236894 + L1M4 LINE L1 5171 5319 -827 1771 84 0 0 chr13 18508004 18508231 -101236667 + AluSc SINE Alu 39 265 -44 417 227 191 43 chr13 18508326 18508604 -101236294 + LTR50 LTR ERVL 460 778 -17 567 194 15 37 chr13 18509015 18509149 -101235749 + FLAM_C SINE Alu 1 131 -2 1242 121 56 39 chr13 18509166 18509397 -101235501 - LTR12 LTR ERV1 0 714 480 265 303 10 0 chr13 18509397 18509496 -101235402 - LTR30 LTR ERV1 -79 643 544 1416 73 232 0 chr13 18509501 18509721 -101235177 - LTR12 LTR ERV1 -442 272 2 933 75 82 0 chr13 18509721 18509855 -101235043 + AluYa5 SINE Alu 145 289 -22 324 0 0 0 chr13 18509859 18509895 -101235003 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 521 310 81 44 chr13 18510164 18510469 -101234429 + L1MC4 LINE L1 6293 6585 -1307 2337 66 3 0 chr13 18510469 18510771 -101234127 + AluY SINE Alu 1 303 -8 1552 174 0 57 chr13 18510772 18510909 -101233989 + AluJo SINE Alu 1 144 -168 1909 138 14 0 chr13 18510909 18511205 -101233693 + AluSp SINE Alu 1 300 -13 1552 174 0 57 chr13 18511205 18511384 -101233514 + AluJo SINE Alu 144 299 -13 521 310 81 44 chr13 18511384 18511638 -101233260 + L1MC4 LINE L1 6584 6961 -931 1989 90 41 14 chr13 18512060 18512350 -101232548 - AluSp SINE Alu -14 299 2 2054 82 11 11 chr13 18512364 18512664 -101232234 - AluY SINE Alu 0 300 1 219 286 14 14 chr13 18513015 18513085 -101231813 - MIR SINE MIR -122 140 71 1766 140 7 29 chr13 18513123 18513431 -101231467 + AluJo SINE Alu 3 303 -9 279 326 20 31 chr13 18513527 18513625 -101231273 - L2 LINE L2 -27 3245 3149 1505 151 0 0 chr13 18513663 18513901 -101230997 + AluSx SINE Alu 64 301 -11 4741 123 48 15 chr13 18513901 18514558 -101230340 - L1MC1 LINE L1 -207 6126 5439 2198 94 7 7 chr13 18514558 18514867 -101230031 - AluSx SINE Alu -3 309 1 4741 123 48 15 chr13 18514867 18514959 -101229939 - L1MC1 LINE L1 -894 5439 5352 216 0 0 0 chr13 18515238 18515262 -101229636 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1899 118 23 33 chr13 18515299 18515604 -101229294 - AluSq SINE Alu -11 302 1 2264 65 16 26 chr13 18515638 18515948 -101228950 - AluY SINE Alu -4 307 1 1485 185 38 3 chr13 18516262 18516554 -101228344 - AluSg SINE Alu -8 302 1 2382 77 0 6 chr13 18516564 18516876 -101228022 - AluY SINE Alu -1 310 1 295 116 0 0 chr13 18516922 18516965 -101227933 - LTR50 LTR ERVL -752 43 1 1466 183 69 25 chr13 18517059 18517307 -101227591 - MER58B DNA MER1_type -2080 340 74 2372 139 31 0 chr13 18517307 18517659 -101227239 - THE1B LTR MaLR -1 363 1 1466 183 69 25 chr13 18517659 18517727 -101227171 - MER58B DNA MER1_type -2346 74 10 2043 93 3 33 chr13 18518188 18518282 -101226616 + AluSp SINE Alu 1 96 -217 3098 112 37 19 chr13 18518282 18518766 -101226132 + LTR15 LTR ERV1 1 493 0 2043 93 3 33 chr13 18518766 18518973 -101225925 + AluSp SINE Alu 96 293 -20 21 57 0 0 chr13 18519049 18519084 -101225814 + AT_rich Low_complexity Low_complexity 1 35 0 1598 195 16 0 chr13 18520002 18520309 -101224589 - AluJo SINE Alu 0 312 1 614 275 23 94 chr13 18520704 18520760 -101224138 - L2 LINE L2 -4 3309 3251 1025 157 23 56 chr13 18520760 18520906 -101223992 + MER3 DNA MER1_type 1 139 -70 2191 87 0 0 chr13 18520906 18521194 -101223704 + AluSc SINE Alu 1 288 -21 1025 157 23 56 chr13 18521194 18521263 -101223635 + MER3 DNA MER1_type 139 209 0 614 275 23 94 chr13 18521263 18521515 -101223383 - L2 LINE L2 -62 3251 3023 571 289 67 53 chr13 18522154 18522229 -101222669 + MIR SINE MIR 14 87 -175 1969 136 10 3 chr13 18522229 18522539 -101222359 - AluSx SINE Alu 0 312 1 571 289 67 53 chr13 18522539 18522688 -101222210 + MIR SINE MIR 87 241 -21 1477 166 19 63 chr13 18523197 18523516 -101221382 + AluJo SINE Alu 1 305 -7 246 208 0 0 chr13 18523516 18523569 -101221329 + GA-rich Low_complexity Low_complexity 1 53 0 1868 153 0 7 chr13 18523990 18524298 -101220600 - AluSq SINE Alu -7 306 1 309 253 11 35 chr13 18524942 18525029 -101219869 - MIR SINE MIR -3 259 175 1017 113 0 13 chr13 18525729 18525888 -101219010 + AluSg/x SINE Alu 154 310 0 1973 121 7 3 chr13 18525908 18526197 -101218701 + AluSx SINE Alu 12 301 -11 290 180 0 20 chr13 18527201 18527251 -101217647 + tRNA-Arg-AGG tRNA tRNA 2 50 -26 4239 134 51 25 chr13 18527635 18528186 -101216712 + L1MB3 LINE L1 5393 5971 -212 2013 117 0 3 chr13 18528186 18528476 -101216422 + AluSx SINE Alu 1 289 -23 4239 134 51 25 chr13 18528476 18528692 -101216206 + L1MB3 LINE L1 5971 6180 -3 516 229 18 0 chr13 18528831 18528940 -101215958 + MER45 DNA AcHobo 1 111 -929 1873 130 3 17 chr13 18528942 18529284 -101215614 - AluJb SINE Alu 0 312 1 496 232 155 32 chr13 18529732 18529887 -101215011 - L1MEd LINE L1 -5511 608 435 1994 135 0 0 chr13 18530292 18530595 -101214303 + AluSx SINE Alu 1 303 -9 2911 187 27 19 chr13 18532422 18532753 -101212145 + L1MB2 LINE L1 5511 5851 -320 1761 114 0 11 chr13 18532753 18533015 -101211883 - AluSx SINE Alu -53 259 1 2911 187 27 19 chr13 18533015 18533310 -101211588 + L1MB2 LINE L1 5851 6142 -29 240 256 24 49 chr13 18533459 18533541 -101211357 + HAL1 LINE L1 27 106 -2401 808 129 0 25 chr13 18533544 18533776 -101211122 + AluJb SINE Alu 2 299 -13 226 301 7 35 chr13 18534168 18534311 -101210587 + (CA)n Simple_repeat Simple_repeat 1 139 0 2411 176 9 12 chr13 18535003 18535424 -101209474 + LOR1b LTR ERV1 42 461 0 247 208 181 0 chr13 18535425 18535497 -101209401 - MIR SINE MIR -86 176 92 2427 61 0 10 chr13 18536559 18536853 -101208045 + AluY SINE Alu 1 291 -20 2129 101 0 11 chr13 18538482 18538769 -101206129 - AluSx SINE Alu -2 310 27 2158 133 0 3 chr13 18539263 18539572 -101205326 + AluSx SINE Alu 1 308 -4 1140 263 185 2 chr13 18540848 18541410 -101203488 - L2 LINE L2 -826 2488 1824 326 169 31 0 chr13 18541410 18541475 -101203423 + L1MC5 LINE L1 7327 7393 -568 818 139 0 0 chr13 18541479 18541594 -101203304 + FLAM_C SINE Alu 1 115 -28 210 71 0 0 chr13 18541595 18541623 -101203275 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 1346 199 56 91 chr13 18541624 18542162 -101202736 + L1MC5 LINE L1 7395 7913 -48 294 253 148 50 chr13 18542174 18542376 -101202522 - L2 LINE L2 -1478 1836 1615 2426 71 7 0 chr13 18542822 18543192 -101201706 + AluY SINE Alu 1 372 0 2100 129 0 7 chr13 18544066 18544361 -101200537 + AluSx SINE Alu 1 293 -19 2473 134 37 32 chr13 18545086 18545495 -101199403 - MSTB1 LTR MaLR -14 418 8 193 242 176 11 chr13 18545912 18546003 -101198895 - MIR3 SINE MIR -92 116 11 1694 129 0 0 chr13 18546858 18547082 -101197816 - AluSg/x SINE Alu -17 293 70 376 243 97 14 chr13 18547445 18547589 -101197309 - L1ME LINE L1 -592 5574 5419 363 86 17 17 chr13 18548215 18548273 -101196625 - FRAM SINE Alu -69 97 40 2146 128 3 6 chr13 18548278 18548591 -101196307 - AluSx SINE Alu 0 312 1 1849 237 61 19 chr13 18548592 18549166 -101195732 - L1ME LINE L1 -1040 5106 4509 5472 213 71 68 chr13 18549453 18550064 -101194834 - L1ME LINE L1 -1605 4541 3933 2438 66 0 10 chr13 18550064 18550367 -101194531 + AluY SINE Alu 1 300 -11 5472 213 71 68 chr13 18550367 18551794 -101193104 - L1ME LINE L1 -2213 3933 2497 22 103 0 0 chr13 18551794 18551872 -101193026 + AT_rich Low_complexity Low_complexity 1 78 0 401 215 21 0 chr13 18551901 18551994 -101192904 - L1MC1 LINE L1 -17 6316 6222 2221 145 43 0 chr13 18553291 18553683 -101191215 + L1MA4A LINE L1 5884 6292 -11 608 269 22 97 chr13 18553993 18554261 -101190637 - MIR SINE MIR -7 255 8 1628 172 109 32 chr13 18554357 18554759 -101190139 + L1MC3 LINE L1 6701 7133 -652 1973 98 0 0 chr13 18554859 18555105 -101189793 - AluSx SINE Alu -64 248 3 1189 156 161 8 chr13 18555868 18556111 -101188787 + AluJb SINE Alu 1 280 -32 257 263 0 66 chr13 18556121 18556197 -101188701 + (TG)n Simple_repeat Simple_repeat 2 72 0 2431 65 3 0 chr13 18556274 18556567 -101188331 - AluSp SINE Alu -19 294 1 287 258 151 0 chr13 18557157 18557250 -101187648 + MIR SINE MIR 48 154 -108 254 186 139 23 chr13 18558535 18558621 -101186277 + L1ME LINE L1 5373 5468 -2340 1136 143 25 20 chr13 18558954 18559157 -101185741 + AluJo SINE Alu 17 220 -92 330 87 0 0 chr13 18559200 18559246 -101185652 + (TG)n Simple_repeat Simple_repeat 2 47 0 943 145 76 47 chr13 18559309 18559481 -101185417 + AluJo SINE Alu 120 296 -16 2405 68 31 0 chr13 18559483 18559777 -101185121 + AluY SINE Alu 1 303 -8 582 250 118 20 chr13 18559804 18560008 -101184890 + LTR40a LTR ERVL 296 519 0 350 284 80 0 chr13 18560012 18560187 -101184711 + L1ME LINE L1 5591 5738 -383 1469 282 87 25 chr13 18560202 18560883 -101184015 + L1MEc LINE L1 40 762 -5634 1601 191 13 19 chr13 18560942 18561257 -101183641 + MLT1A1 LTR MaLR 51 363 -2 1581 182 62 46 chr13 18561257 18561684 -101183214 + L1M4 LINE L1 4865 5303 -843 2210 112 7 0 chr13 18561684 18561979 -101182919 - AluSq SINE Alu -16 297 1 1581 182 62 46 chr13 18561979 18562052 -101182846 + L1M4 LINE L1 5303 5373 -773 4648 144 28 35 chr13 18562355 18562842 -101182056 + L1MB2 LINE L1 5286 5775 -396 2027 122 43 45 chr13 18562842 18563066 -101181832 + THE1C LTR MaLR 1 225 -150 2209 118 3 7 chr13 18563066 18563372 -101181526 + AluSq SINE Alu 1 305 -8 2027 122 43 45 chr13 18563372 18563523 -101181375 + THE1C LTR MaLR 225 375 0 4648 144 28 35 chr13 18563523 18563876 -101181022 + L1MB2 LINE L1 5775 6122 -49 2149 146 0 0 chr13 18563876 18564184 -101180714 + AluSx SINE Alu 1 308 -4 4648 144 28 35 chr13 18564184 18564225 -101180673 + L1MB2 LINE L1 6122 6162 -9 1290 204 168 127 chr13 18564232 18564731 -101180167 + L1ME1 LINE L1 5318 5795 -371 2022 133 0 0 chr13 18564731 18565009 -101179889 + AluSx SINE Alu 1 278 -34 273 57 0 0 chr13 18565011 18565046 -101179852 + (CA)n Simple_repeat Simple_repeat 2 36 0 1290 204 168 127 chr13 18565046 18565118 -101179780 + L1ME1 LINE L1 5795 5863 -303 2475 90 0 0 chr13 18565118 18565428 -101179470 + AluY SINE Alu 2 311 0 1290 204 168 127 chr13 18565428 18565626 -101179272 + L1ME1 LINE L1 5863 6123 -43 * 1932 251 88 59 chr13 18565613 18565815 -101179083 + L1M4 LINE L1 2921 3116 -3030 2216 95 0 0 chr13 18565815 18566089 -101178809 + AluSc SINE Alu 1 274 -35 2567 157 16 40 chr13 18566091 18566595 -101178303 - LTR22B LTR ERVK 0 492 1 1932 251 88 59 chr13 18566595 18567328 -101177570 + L1M4 LINE L1 3116 3887 -2259 938 144 0 0 chr13 18567331 18567463 -101177435 + AluSc SINE Alu 1 132 -177 1668 78 0 5 chr13 18567592 18567797 -101177101 - AluY SINE Alu -107 204 1 1640 140 18 42 chr13 18567819 18568104 -101176794 + AluJo SINE Alu 13 290 -22 370 192 39 13 chr13 18568256 18568334 -101176564 - Tigger4(Zombi) DNA MER2_type 0 2731 2652 2283 96 20 0 chr13 18568336 18568628 -101176270 + AluSq SINE Alu 1 298 -15 2391 74 0 0 chr13 18568672 18568968 -101175930 + AluY SINE Alu 1 296 -15 5227 97 34 10 chr13 18568968 18569764 -101175134 + LOR1-int LTR ERV1 4707 5524 -2596 1181 104 29 0 chr13 18569763 18569936 -101174962 + LOR1-int LTR ERV1 5809 5986 -2134 * 483 273 33 11 chr13 18570056 18570239 -101174659 - AluSp SINE Alu -124 189 3 3641 88 50 47 chr13 18570244 18570868 -101174030 - LOR1-int LTR ERV1 -3407 4713 4088 348 131 40 46 chr13 18570885 18571060 -101173838 + (TG)n Simple_repeat Simple_repeat 2 175 0 231 122 55 66 chr13 18571090 18571271 -101173627 + (TG)n Simple_repeat Simple_repeat 1 179 0 914 100 27 0 chr13 18571271 18571421 -101173477 - LOR1-int LTR ERV1 -4482 3638 3485 342 156 54 18 chr13 18571434 18571601 -101173297 + (TG)n Simple_repeat Simple_repeat 2 174 0 318 162 60 12 chr13 18571615 18571782 -101173116 + (TG)n Simple_repeat Simple_repeat 1 175 0 314 112 78 9 chr13 18571843 18571959 -101172939 + (TG)n Simple_repeat Simple_repeat 2 125 0 239 306 97 15 chr13 18572236 18572370 -101172528 + L1ME LINE L1 5678 5822 -348 2278 99 0 0 chr13 18572402 18572696 -101172202 - AluY SINE Alu -17 294 1 1742 104 4 0 chr13 18572988 18573228 -101171670 + AluSx SINE Alu 1 241 -71 700 153 113 20 chr13 18573256 18573406 -101171492 + MER1B DNA MER1_type 1 164 -133 22 35 0 0 chr13 18573882 18573911 -101170987 + AT_rich Low_complexity Low_complexity 1 29 0 1722 136 0 28 chr13 18574144 18574430 -101170468 + AluSx SINE Alu 31 308 -4 30 0 0 0 chr13 18574619 18574649 -101170249 + AT_rich Low_complexity Low_complexity 1 30 0 501 135 0 0 chr13 18625709 18625783 -101119115 - AluS SINE Alu -239 74 1 720 291 51 22 chr13 18625874 18626451 -101118447 - L1MEc LINE L1 -3687 3254 2701 322 189 0 78 chr13 18626462 18626552 -101118346 - L1MEc LINE L1 -5194 1737 1655 265 279 64 17 chr13 18626554 18626726 -101118172 - L1MEc LINE L1 -4963 1460 1281 739 240 56 0 chr13 18626744 18626940 -101117958 - MER3 DNA MER1_type 0 209 3 356 292 125 14 chr13 18627550 18627717 -101117181 - MIR SINE MIR -63 145 11 926 187 155 5 chr13 18628843 18629030 -101115868 - MER58A DNA MER1_type -9 215 1 23 33 0 0 chr13 18629309 18629339 -101115559 + AT_rich Low_complexity Low_complexity 1 30 0 354 143 0 16 chr13 18629997 18630060 -101114838 - HsTC2 DNA Tc2 -13 1885 1824 284 216 40 27 chr13 18630060 18630134 -101114764 + L1ME2 LINE L1 6031 6105 -59 28 71 0 0 chr13 18630134 18630190 -101114708 + AT_rich Low_complexity Low_complexity 1 56 0 1967 156 0 0 chr13 18630702 18630990 -101113908 - AluSx SINE Alu -19 293 6 527 289 228 0 chr13 18631480 18631677 -101113221 - MIR SINE MIR 0 262 21 21 89 0 0 chr13 18631722 18631778 -101113120 + AT_rich Low_complexity Low_complexity 1 56 0 766 255 109 73 chr13 18631927 18631993 -101112905 - MLT1L LTR MaLR 0 615 553 2039 126 3 16 chr13 18631993 18632302 -101112596 + AluJo SINE Alu 1 305 -7 766 255 109 73 chr13 18632302 18632686 -101112212 - MLT1L LTR MaLR -62 553 149 1000 175 7 0 chr13 18633387 18633541 -101111357 + FAM SINE Alu 1 155 -30 2106 114 3 28 chr13 18633542 18633859 -101111039 - AluSx SINE Alu -3 309 1 1520 166 0 51 chr13 18634027 18634358 -101110540 + AluJo SINE Alu 1 316 0 827 141 0 59 chr13 18635592 18635727 -101109171 + AluJo/FLAM SINE Alu 1 127 -185 2386 61 0 7 chr13 18635730 18636023 -101108875 + AluY SINE Alu 1 291 -20 24 0 0 0 chr13 18636023 18636047 -101108851 + AT_rich Low_complexity Low_complexity 1 24 0 2694 194 51 27 chr13 18638971 18639469 -101105429 + L1MB8 LINE L1 5450 5972 -206 2215 114 0 0 chr13 18639469 18639766 -101105132 + AluSx SINE Alu 1 297 -15 2694 194 51 27 chr13 18639766 18639979 -101104919 + L1MB8 LINE L1 5972 6178 0 212 321 71 24 chr13 18640344 18640428 -101104470 + MIR3 SINE MIR 99 186 -22 1933 133 14 0 chr13 18640592 18640877 -101104021 - AluSx SINE Alu -10 302 14 2151 130 0 0 chr13 18640988 18641280 -101103618 + AluSg SINE Alu 1 292 -18 1276 90 12 0 chr13 18641623 18641789 -101103109 + AluSq SINE Alu 133 300 -13 579 199 209 71 chr13 18641803 18641999 -101102899 + MIR SINE MIR 5 227 -35 2038 137 0 10 chr13 18641999 18642298 -101102600 + AluJb SINE Alu 1 296 -16 487 224 19 19 chr13 18642298 18642405 -101102493 + AluJb SINE Alu 135 241 -71 1058 181 8 63 chr13 18642413 18642651 -101102247 + AluJo SINE Alu 85 309 -3 23 68 0 0 chr13 18642685 18642729 -101102169 + AT_rich Low_complexity Low_complexity 1 44 0 1767 184 0 3 chr13 18643057 18643359 -101101539 + AluJb SINE Alu 1 301 0 36 87 0 0 chr13 18643515 18643607 -101101291 + AT_rich Low_complexity Low_complexity 1 92 0 1772 226 34 36 chr13 18644023 18644493 -101100405 - MER21B LTR ERV1 -202 661 193 1002 223 89 81 chr13 18644496 18644979 -101099919 + L1MDa LINE L1 492 1074 -5466 2150 138 0 6 chr13 18644983 18645294 -101099604 + AluSx SINE Alu 2 310 -2 1887 145 44 7 chr13 18647858 18648155 -101096743 + AluSg SINE Alu 1 308 -2 366 339 6 28 chr13 18648345 18648567 -101096331 + G-rich Low_complexity Low_complexity 1 216 0 1966 128 40 10 chr13 18649101 18649398 -101095500 - AluSx SINE Alu -6 306 1 1085 76 0 0 chr13 18649401 18649533 -101095365 - AluY SINE Alu -179 132 1 255 287 14 77 chr13 18649567 18649710 -101095188 - MER5A DNA MER1_type -21 168 35 507 225 47 16 chr13 18649740 18649869 -101095029 + MER5B DNA MER1_type 17 149 -29 197 324 14 14 chr13 18649951 18650022 -101094876 - MER5B DNA MER1_type -87 91 21 2155 93 0 4 chr13 18650163 18650441 -101094457 - AluY SINE Alu -6 305 29 1553 251 68 38 chr13 18650741 18651758 -101093140 - L1ME3A LINE L1 -213 5957 4724 1071 193 51 77 chr13 18651759 18651876 -101093022 + MLT1A1 LTR MaLR 1 120 -245 1581 88 5 5 chr13 18651876 18652091 -101092807 - AluSc SINE Alu -8 301 87 1071 193 51 77 chr13 18652091 18652370 -101092528 + MLT1A1 LTR MaLR 120 405 40 221 0 35 0 chr13 18652370 18652399 -101092499 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1846 153 0 4 chr13 18652399 18652680 -101092218 - AluSx SINE Alu -32 280 1 1071 193 51 77 chr13 18652680 18652719 -101092179 + MLT1A1 LTR MaLR 322 360 -5 384 243 56 0 chr13 18652722 18652829 -101092069 - L1ME3A LINE L1 -1417 4729 4617 279 0 0 0 chr13 18652840 18652871 -101092027 + (A)n Simple_repeat Simple_repeat 1 31 0 2147 186 34 5 chr13 18652899 18653345 -101091553 - L1MC1 LINE L1 -9 6258 5800 892 151 73 28 chr13 18653348 18653527 -101091371 - MER46A DNA MER2_type -4 232 46 4018 204 25 16 chr13 18653538 18654787 -101090111 - L1MC1 LINE L1 -562 5705 4440 2233 75 4 7 chr13 18654787 18655088 -101089810 - AluY SINE Alu 0 300 1 4018 204 25 16 chr13 18655088 18655319 -101089579 - L1MC1 LINE L1 -1827 4440 4213 403 254 167 4 chr13 18655307 18655535 -101089363 - L1MC1 LINE L1 -3275 2805 2541 * 935 154 77 16 chr13 18655541 18655723 -101089175 - MER21B LTR ERV1 -364 499 307 715 118 133 0 chr13 18655797 18655932 -101088966 - MER21A LTR ERV1 -778 153 1 569 159 45 89 chr13 18655932 18656089 -101088809 - MER21A-int LTR ERV1 0 4191 4042 1348 148 70 0 chr13 18656106 18656376 -101088522 - L1MA8 LINE L1 -22 6269 5981 405 288 93 0 chr13 18656518 18656636 -101088262 + MIR SINE MIR 110 238 -24 32 75 0 0 chr13 18657274 18657341 -101087557 + AT_rich Low_complexity Low_complexity 1 67 0 2507 84 0 0 chr13 18657362 18657673 -101087225 - AluY SINE Alu 0 311 1 2425 98 0 3 chr13 18658761 18659067 -101085831 + AluSx SINE Alu 1 305 -7 276 318 31 0 chr13 18661616 18661745 -101083153 - L1MC1 LINE L1 -5936 134 2 735 148 39 23 chr13 18661884 18662012 -101082886 - FLAM_C SINE Alu -3 130 1 316 189 132 0 chr13 18662035 18662159 -101082739 - L1MEd LINE L1 -4739 1321 895 247 325 97 0 chr13 18662656 18662770 -101082128 - MIR3 SINE MIR -2 206 82 1777 159 31 3 chr13 18663183 18663472 -101081426 + AluJb SINE Alu 6 302 -10 995 112 22 39 chr13 18664467 18664646 -101080252 - THE1C LTR MaLR 0 375 200 258 267 36 67 chr13 18664644 18664809 -101080089 - LTR16A LTR ERVL -228 222 63 * 378 224 95 20 chr13 18665154 18665301 -101079597 - MLT1H LTR MaLR 0 549 392 2084 108 0 69 chr13 18665736 18666069 -101078829 + AluSx SINE Alu 1 310 -2 3471 75 37 0 chr13 18666116 18666597 -101078301 - L1PA4 LINE L1 0 6155 5657 2097 61 0 41 chr13 18666932 18667227 -101077671 + L1PA8 LINE L1 5887 6169 -3 232 237 52 41 chr13 18668020 18668117 -101076781 - MLT1-int LTR MaLR -1269 102 5 2550 159 61 10 chr13 18668130 18668619 -101076279 + L1MB7 LINE L1 5671 6184 0 269 235 103 7 chr13 18668619 18668749 -101076149 - MLT2E LTR ERVL -14 614 472 802 243 35 31 chr13 18668877 18669132 -101075766 - MLT2E LTR ERVL -353 275 20 305 349 105 0 chr13 18669992 18670164 -101074734 - L1MC/D LINE L1 -2174 5634 5445 636 242 144 43 chr13 18670446 18670814 -101074084 - HAL1 LINE L1 -1514 993 589 307 270 138 20 chr13 18670816 18670968 -101073930 - L2 LINE L2 -231 3082 2913 2156 121 0 3 chr13 18671094 18671392 -101073506 - AluSx SINE Alu -4 308 12 318 265 114 58 chr13 18671469 18671603 -101073295 - L1MC/D LINE L1 -1065 5081 4956 2349 57 7 4 chr13 18671603 18671925 -101072973 + AluY SINE Alu 1 323 0 318 265 114 58 chr13 18671925 18672132 -101072766 - L1MC/D LINE L1 -1190 4956 4721 1937 152 0 7 chr13 18672176 18672472 -101072426 + AluJb SINE Alu 1 294 -18 2160 108 10 0 chr13 18673633 18673921 -101070977 + AluSx SINE Alu 1 291 -21 1797 130 41 0 chr13 18674879 18675169 -101069729 - AluSx SINE Alu 0 301 1 773 189 0 0 chr13 18675211 18675338 -101069560 + FLAM_C SINE Alu 1 127 -16 1729 167 7 7 chr13 18675354 18675664 -101069234 + AluSx SINE Alu 11 312 0 2378 81 3 3 chr13 18676209 18676516 -101068382 - AluSq SINE Alu -6 307 1 204 163 0 23 chr13 18676523 18676566 -101068332 + T-rich Low_complexity Low_complexity 4 45 0 26 30 0 0 chr13 18676756 18676789 -101068109 + AT_rich Low_complexity Low_complexity 1 33 0 240 335 45 53 chr13 18677293 18677423 -101067475 + L2 LINE L2 707 836 -2478 2198 90 0 68 chr13 18677423 18677744 -101067154 - AluSx SINE Alu -13 299 1 240 335 45 53 chr13 18677744 18678010 -101066888 + L2 LINE L2 836 1100 -2214 1764 191 33 15 chr13 18678825 18679186 -101065712 + L1M4c LINE L1 1227 1597 -4787 186 43 0 0 chr13 18679186 18679209 -101065689 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1764 191 33 15 chr13 18679209 18679240 -101065658 + L1M4c LINE L1 1597 1626 -4758 2149 125 3 0 chr13 18679241 18679545 -101065353 + AluSx SINE Alu 1 305 -7 6832 235 39 17 chr13 18679545 18682028 -101062870 + L1M4c LINE L1 2125 4666 -1716 1653 203 29 7 chr13 18682077 18682495 -101062403 - L1M4 LINE L1 -1272 4874 4448 2096 156 60 24 chr13 18682664 18682738 -101062160 + L1MB4 LINE L1 5705 5775 -405 1519 158 131 0 chr13 18682738 18683036 -101061862 + MER44D DNA MER2_type 1 607 -2 2096 156 60 24 chr13 18683036 18683415 -101061483 + L1MB4 LINE L1 5775 6174 -6 345 171 11 34 chr13 18683426 18683514 -101061384 + L1MB8 LINE L1 6093 6178 0 1402 199 81 0 chr13 18683526 18683798 -101061100 + AluJb SINE Alu 2 295 -17 300 190 70 60 chr13 18683800 18683900 -101060998 + L1ME3A LINE L1 5901 6001 -169 220 206 270 16 chr13 18684317 18684380 -101060518 - MIR SINE MIR -151 111 33 1024 105 0 0 chr13 18686430 18686563 -101058335 - AluSq/x SINE Alu -180 133 1 978 207 0 6 chr13 18686732 18686906 -101057992 + FAM SINE Alu 2 174 -1 1564 122 5 0 chr13 18687638 18687851 -101057047 - AluSg/x SINE Alu -22 288 75 821 138 0 0 chr13 18688381 18688497 -101056401 + AluSq/x SINE Alu 1 116 -197 324 0 0 0 chr13 18688498 18688534 -101056364 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1543 174 60 3 chr13 18688834 18689116 -101055782 - AluSq SINE Alu -15 298 1 896 234 9 14 chr13 18689337 18689551 -101055347 - MER20 DNA MER1_type -1 218 6 1557 205 21 0 chr13 18689947 18690235 -101054663 + AluJo SINE Alu 1 294 -18 2314 96 0 0 chr13 18690384 18690677 -101054221 - AluSg SINE Alu -17 293 1 1142 288 81 36 chr13 18690727 18691603 -101053295 - L2 LINE L2 -26 3287 2287 275 327 98 72 chr13 18691785 18692131 -101052767 - L2 LINE L2 -55 3217 2863 2132 112 3 7 chr13 18692189 18692485 -101052413 + AluSg SINE Alu 1 295 -15 257 322 39 17 chr13 18692570 18692750 -101052148 + HAL1 LINE L1 223 406 -2101 1441 96 0 0 chr13 18692837 18693045 -101051853 + L1P3 LINE L1 1084 1291 -5170 1683 66 0 0 chr13 18693049 18693277 -101051621 + L1P LINE L1 3500 3727 -2419 27 62 0 0 chr13 18693379 18693427 -101051471 + AT_rich Low_complexity Low_complexity 1 48 0 285 228 0 0 chr13 18694707 18694764 -101050134 + MER5A DNA MER1_type 132 188 -1 2456 80 0 0 chr13 18695533 18695835 -101049063 + AluY SINE Alu 1 302 -9 253 352 26 0 chr13 18696879 18696967 -101047931 + MIR SINE MIR 59 146 -62 205 100 320 0 chr13 18696983 18697033 -101047865 - MER5C DNA MER1_type -5 319 254 199 320 120 0 chr13 18697096 18697196 -101047702 - MER5C DNA MER1_type -208 116 5 226 234 125 16 chr13 18697515 18697643 -101047255 - HAL1b LINE L1 -18 1330 1189 180 245 38 19 chr13 18698059 18698112 -101046786 - L2 LINE L2 -13 3259 3206 201 186 17 68 chr13 18698285 18698344 -101046554 + T-rich Low_complexity Low_complexity 6 61 0 1067 76 0 0 chr13 18698346 18698477 -101046421 - AluSg SINE Alu -179 131 1 368 219 0 0 chr13 18698481 18698563 -101046335 + MER69 DNA AcHobo 2443 2524 -2 253 380 53 12 chr13 18698606 18698777 -101046121 + L2 LINE L2 1789 1966 -1348 2337 90 0 7 chr13 18700160 18700459 -101044439 - AluSx SINE Alu -15 297 1 207 0 0 0 chr13 18701259 18701282 -101043616 + (T)n Simple_repeat Simple_repeat 1 23 0 437 299 47 0 chr13 18702657 18702784 -101042114 - L2 LINE L2 -1 3312 3180 840 212 161 20 chr13 18703333 18703625 -101041273 - MER46C DNA MER2_type -1 337 5 207 0 0 0 chr13 18705438 18705461 -101039437 + (TA)n Simple_repeat Simple_repeat 2 24 0 2283 66 49 0 chr13 18705461 18705748 -101039150 - AluY SINE Alu -10 301 1 1327 230 33 9 chr13 18706313 18706644 -101038254 - MER58B DNA MER1_type -2 339 1 528 241 43 0 chr13 18706997 18707138 -101037760 + MIR SINE MIR 92 238 -24 433 329 0 7 chr13 18707368 18707523 -101037375 + MARNA DNA Mariner 43 196 -390 219 246 0 0 chr13 18707561 18707618 -101037280 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 339 325 31 19 chr13 18708769 18708929 -101035969 - L2 LINE L2 -1370 1944 1783 1794 194 54 71 chr13 18708982 18709502 -101035396 - MER9 LTR ERVK 0 511 1 23603 173 19 14 chr13 18709502 18714734 -101030164 - HERVK9 LTR ERVK 0 7321 1626 2979 165 35 54 chr13 18714730 18715643 -101029255 - HERVK9 LTR ERVK -5071 874 1 * 1927 186 58 44 chr13 18715643 18716147 -101028751 - MER9 LTR ERVK 0 511 1 242 221 174 62 chr13 18716244 18716324 -101028574 + L1MC/D LINE L1 5533 5603 -2205 2146 118 0 30 chr13 18716324 18716629 -101028269 + AluSx SINE Alu 1 296 -16 242 221 174 62 chr13 18716629 18716743 -101028155 + L1MC/D LINE L1 5603 5749 -2059 489 181 0 0 chr13 18717656 18717739 -101027159 - FRAM/FAM SINE Alu -94 82 1 243 0 0 0 chr13 18717758 18717785 -101027113 + (A)n Simple_repeat Simple_repeat 1 27 0 354 309 40 40 chr13 18718180 18718306 -101026592 + MIR SINE MIR 16 141 -67 318 294 35 12 chr13 18718412 18718497 -101026401 + L1MA4A LINE L1 834 920 -5929 12277 183 82 12 chr13 18718497 18718532 -101026366 + L1MA4A LINE L1 2081 2112 -4893 1492 130 123 53 chr13 18718532 18718816 -101026082 - AluSg SINE Alu -6 304 1 12277 183 82 12 chr13 18718816 18723362 -101021536 + L1MA4A LINE L1 2112 6982 -23 2001 250 127 49 chr13 18723357 18723723 -101021175 + HAL1 LINE L1 1171 1507 -1000 * 725 197 31 0 chr13 18723723 18723850 -101021048 - FLAM_A SINE Alu -2 131 1 2001 250 127 49 chr13 18723850 18724416 -101020482 + HAL1 LINE L1 1507 2220 -287 2141 133 3 3 chr13 18724416 18724724 -101020174 + AluSx SINE Alu 1 308 -4 2001 250 127 49 chr13 18724724 18724992 -101019906 + HAL1 LINE L1 2220 2466 -41 2358 58 7 3 chr13 18724992 18725287 -101019611 - AluY SINE Alu -15 296 1 368 219 0 0 chr13 18725291 18725373 -101019525 + MER69 DNA AcHobo 2443 2524 -2 253 380 53 12 chr13 18725416 18725587 -101019311 + L2 LINE L2 1789 1966 -1348 2269 97 0 10 chr13 18726970 18727270 -101017628 - AluSx SINE Alu -15 297 1 207 0 0 0 chr13 18728070 18728093 -101016805 + (T)n Simple_repeat Simple_repeat 1 23 0 437 299 47 0 chr13 18729468 18729595 -101015303 - L2 LINE L2 -1 3312 3180 370 200 13 0 chr13 18730144 18730219 -101014679 - MER46C DNA MER2_type -1 337 262 373 219 0 0 chr13 18730552 18730634 -101014264 - FRAM/FAM SINE Alu -85 81 1 234 0 0 0 chr13 18730654 18730680 -101014218 + (A)n Simple_repeat Simple_repeat 1 26 0 512 286 43 36 chr13 18731075 18731215 -101013683 + MIR3 SINE MIR 16 156 -52 253 254 0 0 chr13 18731352 18731407 -101013491 + A-rich Low_complexity Low_complexity 1 55 0 578 323 84 46 chr13 18731413 18731684 -101013214 + L1MEd LINE L1 102 361 -5758 2201 82 0 36 chr13 18731684 18731987 -101012911 + AluSq SINE Alu 1 292 -21 578 323 84 46 chr13 18731987 18732236 -101012662 + L1MEd LINE L1 361 642 -5477 23 33 0 0 chr13 18732346 18732376 -101012522 + AT_rich Low_complexity Low_complexity 1 30 0 804 227 18 0 chr13 18732376 18732539 -101012359 - AluJo SINE Alu -30 282 117 23 0 0 0 chr13 18732546 18732569 -101012329 + AT_rich Low_complexity Low_complexity 1 23 0 2181 109 3 0 chr13 18732569 18732862 -101012036 - AluSg SINE Alu -16 294 1 210 365 17 26 chr13 18733925 18734040 -101010858 - L3 LINE CR1 -81 1496 1383 234 237 129 11 chr13 18735100 18735193 -101009705 + MER112 DNA MER1_type 113 216 -44 214 278 83 30 chr13 18735631 18735764 -101009134 - L2 LINE L2 -32 3281 3142 * 308 333 57 0 chr13 18735731 18735854 -101009044 - L2 LINE L2 -11 3302 3173 2160 115 10 10 chr13 18735856 18736160 -101008738 - AluSg SINE Alu -6 304 1 1380 287 105 53 chr13 18736293 18737178 -101007720 - L2 LINE L2 -337 2977 2047 680 47 0 0 chr13 18737340 18737426 -101007472 - AluSg/x SINE Alu -8 301 216 2119 69 0 36 chr13 18737426 18737701 -101007197 - AluSg1 SINE Alu -44 265 1 2028 144 20 0 chr13 18738089 18738381 -101006517 + AluSx SINE Alu 1 298 -14 1826 144 30 4 chr13 18738572 18738843 -101006055 + AluJo SINE Alu 1 278 -34 1001 272 121 52 chr13 18738843 18738995 -101005903 + L1MCc LINE L1 1177 1317 -5805 2421 75 0 3 chr13 18738995 18739290 -101005608 + AluY SINE Alu 1 294 -17 1001 272 121 52 chr13 18739290 18740075 -101004823 + L1MCc LINE L1 1317 2427 -4695 2223 87 31 3 chr13 18740075 18740363 -101004535 + AluSx SINE Alu 1 296 -16 1001 272 121 52 chr13 18740363 18740633 -101004265 + L1MCc LINE L1 2427 2677 -4445 1784 205 50 44 chr13 18740727 18740759 -101004139 + L1MC4 LINE L1 7127 7157 -885 1881 180 0 0 chr13 18740759 18741065 -101003833 + AluJo SINE Alu 1 306 -6 1784 205 50 44 chr13 18741065 18741529 -101003369 + L1MC4 LINE L1 7157 7626 -416 1865 162 7 10 chr13 18741531 18741828 -101003070 + AluSx SINE Alu 1 296 -16 644 183 7 0 chr13 18741828 18741965 -101002933 + GA-rich Low_complexity Low_complexity 1 138 0 456 244 16 0 chr13 18741987 18742110 -101002788 + L1MC4 LINE L1 7608 7732 -310 437 202 36 0 chr13 18742116 18742200 -101002698 - Tigger5 DNA MER2_type 0 2323 2237 354 167 28 14 chr13 18742254 18742326 -101002572 - Tigger5 DNA MER2_type 0 2323 2251 243 226 19 0 chr13 18742296 18742349 -101002549 - Tigger5 DNA MER2_type -2268 55 2 * 951 215 98 7 chr13 18742351 18742638 -101002260 + L1MC4 LINE L1 7741 8041 -1 1039 190 0 0 chr13 18742645 18742819 -101002079 + FRAM SINE Alu 1 172 -4 402 237 20 33 chr13 18742822 18742974 -101001924 + L1MCc LINE L1 2837 2986 -4136 520 229 35 24 chr13 18743016 18743144 -101001754 + L1MCc LINE L1 2915 3047 -3894 1564 162 72 30 chr13 18743144 18743478 -101001420 + MER7A DNA MER2_type 1 346 0 520 229 35 24 chr13 18743478 18743519 -101001379 + L1MCc LINE L1 3047 3086 -3855 2102 134 3 13 chr13 18743532 18743838 -101001060 + AluSx SINE Alu 1 303 -9 657 327 153 12 chr13 18744026 18744655 -101000243 - L2 LINE L2 -1965 1349 573 2350 80 10 13 chr13 18744685 18744987 -100999911 - AluSg SINE Alu -9 301 1 202 306 116 16 chr13 18746568 18746689 -100998209 - L3 LINE CR1 -139 1438 1306 23 54 0 0 chr13 18747330 18747367 -100997531 + GC_rich Low_complexity Low_complexity 1 37 0 201 183 32 65 chr13 18747369 18747462 -100997436 + G-rich Low_complexity Low_complexity 3 92 0 31 82 0 0 chr13 18747511 18747584 -100997314 + GC_rich Low_complexity Low_complexity 1 73 0 38 61 0 0 chr13 18747672 18747738 -100997160 + GC_rich Low_complexity Low_complexity 1 66 0 305 223 33 12 chr13 18747942 18748193 -100996705 + (CGGGG)n Simple_repeat Simple_repeat 1 256 0 1742 168 10 7 chr13 18749061 18749353 -100995545 + AluJo SINE Alu 16 308 -4 210 321 179 28 chr13 18750123 18750335 -100994563 - L2 LINE L2 -849 2465 2222 1502 170 93 14 chr13 18750812 18751101 -100993797 + AluJb SINE Alu 1 312 0 1636 187 7 14 chr13 18751161 18751455 -100993443 - AluJb SINE Alu -20 292 1 2203 138 0 0 chr13 18751541 18751839 -100993059 - AluSx SINE Alu -10 302 5 306 332 108 13 chr13 18752032 18752348 -100992550 + L1MC4a LINE L1 4965 5310 -836 1653 92 176 44 chr13 18752348 18752621 -100992277 + AluSg1 SINE Alu 1 309 0 691 281 204 18 chr13 18752808 18753200 -100991698 + L1MC4a LINE L1 5495 5959 -1849 2421 80 0 46 chr13 18753962 18754287 -100990611 + AluSp SINE Alu 1 310 -3 681 186 106 53 chr13 18754545 18754613 -100990285 - MSTD LTR MaLR 0 396 333 2372 104 3 0 chr13 18754613 18754911 -100989987 + AluSp SINE Alu 1 299 -14 681 186 106 53 chr13 18754911 18755030 -100989868 - MSTD LTR MaLR -63 333 199 501 159 53 18 chr13 18755059 18755172 -100989726 - MSTD LTR MaLR -279 117 1 235 290 29 0 chr13 18755452 18755521 -100989377 + L1MC/D LINE L1 5713 5783 -2025 2308 86 3 7 chr13 18755936 18756228 -100988670 + AluSx SINE Alu 1 291 -21 526 194 31 0 chr13 18756507 18756636 -100988262 + CT-rich Low_complexity Low_complexity 4 136 0 219 271 4 4 chr13 18758074 18758148 -100986750 + MIR SINE MIR 79 153 -55 493 209 15 45 chr13 18758797 18758931 -100985967 + MER5B DNA MER1_type 8 137 -41 217 274 208 19 chr13 18759209 18759315 -100985583 - MER5A DNA MER1_type 0 189 64 1893 116 65 34 chr13 18759371 18759665 -100985233 - AluJb SINE Alu -9 303 1 247 319 0 14 chr13 18759665 18759737 -100985161 - MER5A DNA MER1_type -114 75 5 547 248 35 25 chr13 18759846 18760044 -100984854 - L1M4 LINE L1 -1379 4767 4568 247 289 158 9 chr13 18760158 18760272 -100984626 - MIR3 SINE MIR -46 162 32 349 363 0 11 chr13 18761972 18762151 -100982747 + (CACG)n Simple_repeat Simple_repeat 1 177 0 * 489 309 3 0 chr13 18762020 18762662 -100982236 + (CA)n Simple_repeat Simple_repeat 1 643 0 427 333 3 3 chr13 18762683 18763004 -100981894 + (CA)n Simple_repeat Simple_repeat 1 321 0 301 274 76 6 chr13 18762961 18763118 -100981780 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 440 297 108 19 chr13 18763196 18763408 -100981490 - L1MC4a LINE L1 -2 7806 7576 183 282 51 39 chr13 18764277 18764355 -100980543 + L2 LINE L2 2420 2498 -816 2653 33 0 3 chr13 18767279 18767581 -100977317 - AluY SINE Alu -10 301 1 291 254 191 9 chr13 18768029 18768139 -100976759 + MIR SINE MIR 103 232 -30 2407 92 0 7 chr13 18768344 18768647 -100976251 + AluSq SINE Alu 1 301 -12 2171 88 3 63 chr13 18768647 18768964 -100975934 + AluSg SINE Alu 1 298 -12 2349 108 0 0 chr13 18770554 18770850 -100974048 - AluSq SINE Alu -12 301 6 1962 138 3 39 chr13 18771139 18771451 -100973447 - AluJb SINE Alu -11 301 1 1245 248 69 7 chr13 18771536 18771993 -100972905 - L1MD2 LINE L1 -12 6347 5835 293 295 67 9 chr13 18772407 18772512 -100972386 + MIR3 SINE MIR 90 200 -8 200 159 0 23 chr13 18773120 18773164 -100971734 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr13 18773774 18773797 -100971101 + AT_rich Low_complexity Low_complexity 1 23 0 554 165 29 0 chr13 18774144 18774247 -100970651 - AluJ SINE Alu -17 295 190 258 231 0 0 chr13 18774250 18774302 -100970596 + LTR30 LTR ERV1 1 52 -670 2802 127 18 9 chr13 18774306 18774763 -100970135 + LTR12 LTR ERV1 123 583 -131 646 215 37 0 chr13 18774764 18774899 -100969999 - AluJ SINE Alu -125 187 48 430 213 11 11 chr13 18774952 18775046 -100969852 + FRAM SINE Alu 1 93 -83 235 354 0 0 chr13 18775109 18775188 -100969710 + MIR3 SINE MIR 82 160 -48 522 291 101 11 chr13 18775216 18775405 -100969493 - MIR SINE MIR 0 262 57 2292 93 7 10 chr13 18775966 18776267 -100968631 - AluSx SINE Alu -12 300 1 2430 96 0 0 chr13 18776729 18777030 -100967868 - AluSg SINE Alu -9 301 1 534 189 117 0 chr13 18777038 18777149 -100967749 - AluJb SINE Alu -188 124 1 315 262 139 25 chr13 18777149 18777271 -100967627 + L1MC4a LINE L1 5778 5913 -1895 380 260 38 46 chr13 18777710 18777927 -100966971 + L1MEc LINE L1 1854 2040 -4500 578 315 46 0 chr13 18777982 18778201 -100966697 + MIR SINE MIR 34 262 0 893 71 0 0 chr13 18778205 18778352 -100966546 - Alu SINE Alu 0 315 169 2038 276 131 21 chr13 18778545 18780345 -100964553 + HAL1 LINE L1 1 2023 -484 597 82 0 0 chr13 18780363 18780448 -100964450 - Alu SINE Alu -8 304 220 303 328 12 12 chr13 18780568 18780739 -100964159 + (CCCA)n Simple_repeat Simple_repeat 3 173 0 * 427 315 6 0 chr13 18780651 18780829 -100964069 + (CA)n Simple_repeat Simple_repeat 1 179 0 301 274 76 6 chr13 18780786 18780943 -100963955 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 * 440 297 108 19 chr13 18781021 18781233 -100963665 - L1MC4a LINE L1 -2 7806 7576 183 282 51 39 chr13 18782101 18782179 -100962719 + L2 LINE L2 2420 2498 -816 2688 33 0 0 chr13 18785103 18785404 -100959494 - AluY SINE Alu -10 301 1 291 254 191 9 chr13 18785852 18785962 -100958936 + MIR SINE MIR 103 232 -30 2384 92 0 7 chr13 18786167 18786470 -100958428 + AluSq SINE Alu 1 301 -12 2133 76 3 66 chr13 18786470 18786772 -100958126 + AluSg SINE Alu 1 283 -27 2149 115 7 3 chr13 18788377 18788672 -100956226 - AluSq SINE Alu -12 301 6 1913 138 3 39 chr13 18788962 18789274 -100955624 - AluJb SINE Alu -11 301 1 228 167 379 0 chr13 18789279 18789345 -100955553 - MLT1I LTR MaLR -277 132 42 1281 224 71 0 chr13 18789359 18789685 -100955213 - L1MD2 LINE L1 -12 6347 5999 297 235 49 0 chr13 18789735 18789816 -100955082 - L1MD2 LINE L1 -440 5919 5835 272 295 67 9 chr13 18790229 18790334 -100954564 + MIR3 SINE MIR 90 200 -8 200 159 0 23 chr13 18790942 18790986 -100953912 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr13 18791596 18791619 -100953279 + AT_rich Low_complexity Low_complexity 1 23 0 581 165 29 0 chr13 18791966 18792069 -100952829 - AluJ SINE Alu -17 295 190 259 231 0 0 chr13 18792072 18792124 -100952774 + LTR30 LTR ERV1 1 52 -670 2927 127 18 9 chr13 18792128 18792585 -100952313 + LTR12 LTR ERV1 123 583 -131 667 215 37 0 chr13 18792586 18792721 -100952177 - AluJ SINE Alu -125 187 48 442 213 11 11 chr13 18792774 18792868 -100952030 + FRAM SINE Alu 1 93 -83 224 354 0 0 chr13 18792931 18793010 -100951888 + MIR3 SINE MIR 82 160 -48 487 289 95 11 chr13 18793038 18793228 -100951670 - MIR SINE MIR 0 262 57 2269 93 7 10 chr13 18793791 18794092 -100950806 - AluSx SINE Alu -12 300 1 2410 92 0 3 chr13 18794554 18794858 -100950040 - AluSx SINE Alu -9 303 1 3952 200 78 33 chr13 18794859 18795117 -100949781 + L1MB7 LINE L1 4095 4340 -1844 1018 141 77 0 chr13 18795117 18795287 -100949611 + U2 snRNA snRNA 5 187 -1 3952 200 78 33 chr13 18795287 18796728 -100948170 + L1MB7 LINE L1 4340 5901 -283 395 81 242 0 chr13 18796728 18796790 -100948108 - MADE1 DNA Mariner 0 80 4 3952 200 78 33 chr13 18796790 18797088 -100947810 + L1MB7 LINE L1 5901 6184 0 562 221 58 0 chr13 18797085 18797239 -100947659 + L1M4 LINE L1 3758 3920 -2226 * 297 221 96 10 chr13 18797229 18797333 -100947565 - L1M4 LINE L1 -2154 3992 3880 * 1628 198 121 5 chr13 18797311 18797716 -100947182 + L1MD1 LINE L1 5783 6234 -8 2479 82 0 0 chr13 18797760 18798066 -100946832 - AluY SINE Alu -5 306 1 228 190 0 35 chr13 18798276 18798334 -100946564 - L1MC4 LINE L1 -1339 6703 6648 26 50 0 0 chr13 18798867 18798907 -100945991 + AT_rich Low_complexity Low_complexity 1 40 0 3061 175 30 25 chr13 18799041 18799631 -100945267 + MER7C DNA MER2_type 10 602 0 1385 141 77 12 chr13 18799631 18799878 -100945020 - Tigger3(Golem) DNA MER2_type -2744 285 23 1361 94 0 0 chr13 18799888 18800069 -100944829 - AluY SINE Alu -4 307 127 873 195 39 66 chr13 18801068 18801324 -100943574 + L1MC5 LINE L1 7176 7424 -537 1777 194 38 3 chr13 18801642 18801983 -100942915 + L1MB7 LINE L1 5730 6082 -102 4469 112 12 155 chr13 18801983 18803557 -100941341 - pTR5 LTR ERV1 0 2606 1524 493 53 11 117 chr13 18803565 18803594 -100941304 + L1MB7 LINE L1 6089 6119 -65 2161 107 3 3 chr13 18803594 18803885 -100941013 + AluSg SINE Alu 2 292 -18 493 53 11 117 chr13 18803885 18803949 -100940949 + L1MB7 LINE L1 6119 6172 -12 2409 91 3 0 chr13 18804527 18804823 -100940075 - AluSc SINE Alu -12 297 1 560 253 35 29 chr13 18805070 18805244 -100939654 - L1MC4 LINE L1 -2085 5723 5549 248 264 86 0 chr13 18805258 18805421 -100939477 - L1MC4 LINE L1 -725 5439 5263 1106 256 20 8 chr13 18805452 18805929 -100938969 + MER90 LTR ERV1 74 614 0 2111 139 0 16 chr13 18806120 18806436 -100938462 - AluSx SINE Alu -1 311 1 7303 95 8 6 chr13 18806736 18808565 -100936333 - L1PA8 LINE L1 0 6172 4340 2371 110 0 0 chr13 18808637 18808946 -100935952 + AluSg1 SINE Alu 1 309 0 2209 113 0 3 chr13 18809227 18809519 -100935379 - AluSg SINE Alu -19 291 1 2414 81 3 0 chr13 18810528 18810824 -100934074 - AluSx SINE Alu -7 305 9 2413 38 11 3 chr13 18811222 18811509 -100933389 + AluY SINE Alu 1 289 -22 1258 156 66 5 chr13 18811609 18811821 -100933077 - AluJb SINE Alu -3 309 85 588 230 15 50 chr13 18811823 18812023 -100932875 - L1MC4 LINE L1 -2091 4055 3863 639 140 5 10 chr13 18812029 18812294 -100932604 - AluJb SINE Alu 0 312 1 464 263 79 44 chr13 18812297 18812525 -100932373 - L1MC4 LINE L1 -2286 3860 3625 1314 193 60 60 chr13 18864044 18864198 -100880700 + MER58B DNA MER1_type 11 164 -2256 2273 110 0 0 chr13 18864198 18864498 -100880400 - AluSp SINE Alu -13 300 1 1314 193 60 60 chr13 18864498 18864674 -100880224 + MER58B DNA MER1_type 163 341 0 21 36 0 0 chr13 18865024 18865052 -100879846 + AT_rich Low_complexity Low_complexity 1 28 0 362 289 134 25 chr13 18865278 18865517 -100879381 - L2 LINE L2 -824 2490 2226 1907 223 60 10 chr13 18866822 18867319 -100877579 + Charlie1b DNA MER1_type 2 523 0 2026 111 19 26 chr13 18868417 18868724 -100876174 + AluSx SINE Alu 1 305 -7 276 185 420 17 chr13 18869370 18869489 -100875409 + L1MC5 LINE L1 7747 7913 -48 797 159 0 15 chr13 18869587 18869719 -100875179 - FLAM_C SINE Alu -3 130 1 21 0 0 0 chr13 18869873 18869894 -100875004 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 18871731 18871754 -100873144 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 18872265 18872290 -100872608 + (T)n Simple_repeat Simple_repeat 1 25 0 31 0 0 0 chr13 18873652 18873683 -100871215 + AT_rich Low_complexity Low_complexity 1 31 0 214 337 117 42 chr13 18873683 18873782 -100871116 - L2 LINE L2 -36 3236 3146 1119 188 119 50 chr13 18873782 18874102 -100870796 + MER2 DNA MER2_type 3 344 0 214 337 117 42 chr13 18874102 18874311 -100870587 - L2 LINE L2 -126 3146 2905 478 187 134 0 chr13 18874709 18874843 -100870055 + L1M4 LINE L1 4263 4414 -1732 1034 194 45 5 chr13 18874844 18875045 -100869853 + AluJb SINE Alu 84 292 -20 1752 174 7 7 chr13 18875140 18875422 -100869476 + AluJb SINE Alu 1 282 -30 23 0 0 0 chr13 18875422 18875445 -100869453 + AT_rich Low_complexity Low_complexity 1 23 0 717 220 13 13 chr13 18875463 18875622 -100869276 - FRAM SINE Alu -11 165 7 21 36 0 0 chr13 18875788 18875816 -100869082 + AT_rich Low_complexity Low_complexity 1 28 0 395 100 0 0 chr13 18876153 18876203 -100868695 - MER8 DNA MER2_type 0 239 190 * 2398 148 39 11 chr13 18876198 18876636 -100868262 + Tigger2 DNA MER2_type 2269 2718 0 2374 164 25 39 chr13 18877114 18877627 -100867271 - L1MB8 LINE L1 -1 6177 5672 889 186 45 45 chr13 18877629 18877828 -100867070 - MER20 DNA MER1_type -20 199 1 1651 167 25 41 chr13 18877848 18878052 -100866846 - AluSx SINE Alu 0 312 113 1952 125 24 53 chr13 18878052 18878427 -100866471 - THE1B LTR MaLR 0 364 1 1651 167 25 41 chr13 18878427 18878539 -100866359 - AluSx SINE Alu -199 113 1 390 224 0 0 chr13 18879539 18879606 -100865292 - MER58A DNA MER1_type -39 68 2 2045 167 129 21 chr13 18879977 18880060 -100864838 + MLT1C LTR MaLR 1 74 -393 2143 111 24 0 chr13 18880060 18880349 -100864549 + AluSx SINE Alu 1 296 -16 2045 167 129 21 chr13 18880349 18880685 -100864213 + MLT1C LTR MaLR 74 465 -2 2052 143 0 13 chr13 18880927 18881241 -100863657 + AluSx SINE Alu 1 310 -2 183 156 0 0 chr13 18881572 18881604 -100863294 + (CATA)n Simple_repeat Simple_repeat 3 34 0 508 288 93 42 chr13 18881666 18881881 -100863017 + MIR SINE MIR 23 248 -14 1588 213 7 7 chr13 18884252 18884548 -100860350 - AluJb SINE Alu -16 296 1 289 271 21 0 chr13 18884752 18884848 -100860050 - Charlie2 DNA MER1_type -158 2704 2607 1488 203 119 21 chr13 18884977 18885558 -100859340 - Charlie2 DNA MER1_type -322 2540 1903 240 250 111 9 chr13 18885596 18885704 -100859194 - Charlie2 DNA MER1_type -2464 318 200 2162 115 60 3 chr13 18886089 18886420 -100858478 + MER41C LTR ERV1 1 350 -204 456 151 24 24 chr13 18886420 18886546 -100858352 + (TA)n Simple_repeat Simple_repeat 1 126 0 1078 138 76 57 chr13 18886555 18886765 -100858133 + MER41C LTR ERV1 341 554 0 1202 272 116 14 chr13 18887126 18887232 -100857666 + L2 LINE L2 2552 2646 -667 1979 126 13 23 chr13 18887232 18887541 -100857357 - AluSx SINE Alu -6 306 1 1202 272 116 14 chr13 18887541 18888115 -100856783 + L2 LINE L2 2646 3307 -6 2469 89 0 0 chr13 18888837 18889141 -100855757 - AluSc SINE Alu -5 304 1 510 291 0 7 chr13 18890310 18890458 -100854440 + MIR SINE MIR 6 152 -110 454 272 188 74 chr13 18893356 18893575 -100851323 - L2 LINE L2 -372 2942 2749 2231 128 0 0 chr13 18893575 18893881 -100851017 - AluSx SINE Alu -6 306 1 454 272 188 74 chr13 18893881 18894322 -100850576 - L2 LINE L2 -565 2749 2207 1684 120 0 0 chr13 18894384 18894601 -100850297 + AluSq SINE Alu 3 219 -94 246 224 176 35 chr13 18894640 18894810 -100850088 + L1 LINE L1 4882 5075 -1071 1406 182 4 13 chr13 18894882 18895171 -100849727 + L1MD3 LINE L1 7510 7973 -3 541 270 137 35 chr13 18895177 18895213 -100849685 + L1ME LINE L1 5188 5219 -902 1580 125 225 36 chr13 18895213 18895573 -100849325 - MSTA LTR MaLR 0 428 1 541 270 137 35 chr13 18895573 18895963 -100848935 + L1ME LINE L1 5219 5659 -462 2159 144 0 0 chr13 18895969 18896268 -100848630 + AluSx SINE Alu 1 299 -13 2129 137 75 27 chr13 18897367 18897769 -100847129 + L1MC1 LINE L1 5904 6324 -9 1730 148 47 7 chr13 18900097 18900374 -100844524 - AluSx SINE Alu -23 289 2 38 51 0 0 chr13 18900892 18900951 -100843947 + AT_rich Low_complexity Low_complexity 1 59 0 2164 110 0 7 chr13 18901113 18901412 -100843486 - AluSq SINE Alu -16 297 1 2365 89 0 0 chr13 18901669 18901960 -100842938 + AluSg SINE Alu 1 291 -19 22 35 0 0 chr13 18902335 18902364 -100842534 + AT_rich Low_complexity Low_complexity 1 29 0 516 146 12 12 chr13 18902918 18903032 -100841866 - L1M LINE L1 -830 5316 5211 771 104 0 9 chr13 18903057 18903172 -100841726 - AluSg/x SINE Alu 0 309 196 767 217 166 5 chr13 18903172 18903389 -100841509 + HAL1 LINE L1 1486 1737 -770 980 106 8 0 chr13 18903463 18903595 -100841303 - FLAM_C SINE Alu 0 133 1 595 111 56 0 chr13 18903844 18903934 -100840964 - AluSg/x SINE Alu -14 295 201 2041 102 4 0 chr13 18903937 18904202 -100840696 + AluSp SINE Alu 47 312 -1 260 229 110 37 chr13 18904223 18904332 -100840566 + HAL1 LINE L1 1729 1845 -662 392 254 0 87 chr13 18904407 18904505 -100840393 + HAL1 LINE L1 2159 2235 -272 1557 165 0 73 chr13 18904505 18904820 -100840078 + AluJb SINE Alu 1 292 -20 392 254 0 87 chr13 18904820 18904906 -100839992 + HAL1 LINE L1 2235 2327 -180 659 236 85 43 chr13 18904911 18905030 -100839868 - L1M4 LINE L1 -883 5263 5151 2387 85 7 3 chr13 18905030 18905337 -100839561 - AluSc SINE Alu -1 308 1 659 236 85 43 chr13 18905337 18905475 -100839423 - L1M4 LINE L1 -995 5151 4995 2278 108 0 19 chr13 18905719 18906034 -100838864 + AluSx SINE Alu 1 309 -3 185 313 102 8 chr13 18907079 18907147 -100837751 + MIR SINE MIR 79 139 -123 1357 155 17 67 chr13 18907147 18907444 -100837454 + AluJo SINE Alu 1 282 -30 357 24 0 0 chr13 18907445 18907487 -100837411 + (GA)n Simple_repeat Simple_repeat 1 42 0 185 313 102 8 chr13 18907487 18907544 -100837354 + MIR SINE MIR 138 218 -44 303 318 85 0 chr13 18907881 18908010 -100836888 + L2 LINE L2 3133 3272 0 2054 125 4 0 chr13 18908086 18908365 -100836533 + AluSg SINE Alu 1 280 -30 331 73 36 0 chr13 18908367 18908422 -100836476 + (TA)n Simple_repeat Simple_repeat 1 57 0 442 295 13 13 chr13 18908426 18908582 -100836316 + MIR SINE MIR 103 258 -4 2329 81 0 14 chr13 18908582 18908877 -100836021 + AluSg SINE Alu 1 291 -19 268 257 57 57 chr13 18908900 18909040 -100835858 + MIR3 SINE MIR 69 208 0 2493 115 37 91 chr13 18909048 18909534 -100835364 + L1MB2 LINE L1 5671 6130 -41 1131 68 0 0 chr13 18909534 18909667 -100835231 + AluYb8 SINE Alu 1 133 -185 2438 49 3 3 chr13 18909668 18909952 -100834946 + AluY SINE Alu 1 284 -27 275 0 0 28 chr13 18909963 18909999 -100834899 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2004 105 7 56 chr13 18910061 18910366 -100834532 + AluSq SINE Alu 1 290 -23 2318 109 0 10 chr13 18910760 18911073 -100833825 + AluY SINE Alu 2 311 0 306 366 6 0 chr13 18911370 18911534 -100833364 + (TGG)n Simple_repeat Simple_repeat 1 165 0 183 326 31 0 chr13 18912306 18912404 -100832494 - MIR SINE MIR -56 206 106 2224 183 25 27 chr13 18912460 18912594 -100832304 + L1MB3 LINE L1 5696 5829 -354 2159 118 0 29 chr13 18912594 18912909 -100831989 + AluSg SINE Alu 1 306 -4 2008 121 37 0 chr13 18912916 18913214 -100831684 + AluSx SINE Alu 2 310 -2 2224 183 25 27 chr13 18913214 18913558 -100831340 + L1MB3 LINE L1 5835 6181 -2 2315 77 0 7 chr13 18914155 18914453 -100830445 - AluY SINE Alu -15 296 1 187 245 0 0 chr13 18914516 18914565 -100830333 - L2 LINE L2 -9 3304 3256 382 287 68 94 chr13 18914592 18914857 -100830041 - L2 LINE L2 -5 3267 3010 253 73 18 109 chr13 18915016 18915071 -100829827 + LTR67 LTR ERVL 504 553 -4 2194 99 0 3 chr13 18915524 18915817 -100829081 - AluSg1 SINE Alu -17 292 1 1874 119 0 14 chr13 18915890 18916167 -100828731 - AluSx SINE Alu 0 312 40 242 167 0 0 chr13 18916532 18916568 -100828330 + Charlie1 DNA MER1_type 1 36 -2725 1232 190 28 120 chr13 18916580 18916690 -100828208 + Charlie1 DNA MER1_type 2347 2466 -295 2165 115 0 7 chr13 18916690 18916994 -100827904 + AluSx SINE Alu 1 302 -10 1232 190 28 120 chr13 18916994 18917340 -100827558 + Charlie1 DNA MER1_type 2466 2761 0 2145 117 0 3 chr13 18918136 18918427 -100826471 + AluSg1 SINE Alu 1 290 -19 2213 105 0 3 chr13 18918513 18918835 -100826063 - AluSx SINE Alu 0 321 1 464 284 66 51 chr13 18918856 18919250 -100825648 + L1ME4a LINE L1 5649 6048 -73 311 90 0 9 chr13 18919252 18919462 -100825436 - AluSc SINE Alu -6 293 1 208 203 85 17 chr13 18919551 18919610 -100825288 + MIR3 SINE MIR 138 200 -8 2129 99 20 17 chr13 18920944 18921237 -100823661 - AluSx SINE Alu -18 294 1 277 200 25 12 chr13 18921530 18921610 -100823288 - MIR SINE MIR -134 128 48 * 300 252 59 25 chr13 18921603 18921722 -100823176 - MIR SINE MIR -89 173 51 2052 136 0 16 chr13 18921756 18922065 -100822833 + AluJb SINE Alu 6 309 -3 30 0 0 0 chr13 18922065 18922095 -100822803 + AT_rich Low_complexity Low_complexity 1 30 0 2333 65 41 3 chr13 18922097 18922387 -100822511 + AluY SINE Alu 3 303 -8 373 244 28 82 chr13 18922422 18922741 -100822157 - L1ME4a LINE L1 -255 5866 5565 237 189 57 0 chr13 18923343 18923396 -100821502 + MER69 DNA AcHobo 1 56 -121 2175 104 0 27 chr13 18923430 18923727 -100821171 - AluSx SINE Alu -23 289 1 975 200 0 0 chr13 18923727 18923902 -100820996 - AluJo/FRAM SINE Alu -3 309 135 2421 84 0 3 chr13 18923902 18924210 -100820688 - AluY SINE Alu -4 307 1 1571 188 0 7 chr13 18924213 18924485 -100820413 - AluJo SINE Alu -39 273 4 706 274 10 5 chr13 18924577 18924774 -100820124 - L1PB4 LINE L1 -3 6153 5956 1977 186 91 59 chr13 18925120 18925458 -100819440 + MER119 DNA MER1_type 5 331 -252 2168 105 20 13 chr13 18925458 18925762 -100819136 + AluSx SINE Alu 3 308 -4 1977 186 91 59 chr13 18925762 18925773 -100819125 + MER119 DNA MER1_type 331 340 -243 2339 95 0 3 chr13 18925773 18926067 -100818831 + AluSc SINE Alu 1 293 -16 1977 186 91 59 chr13 18926067 18926111 -100818787 + MER119 DNA MER1_type 340 381 -202 2456 71 0 10 chr13 18926111 18926420 -100818478 + AluSg SINE Alu 1 306 -4 1977 186 91 59 chr13 18926420 18926582 -100818316 + MER119 DNA MER1_type 381 580 -3 21 0 0 0 chr13 18926794 18926815 -100818083 + AT_rich Low_complexity Low_complexity 1 21 0 2030 121 0 4 chr13 18926815 18927095 -100817803 + AluSx SINE Alu 1 279 -33 2042 103 0 0 chr13 18927095 18927366 -100817532 + AluSq SINE Alu 39 310 -3 2292 73 0 0 chr13 18927386 18927729 -100817169 + AluY SINE Alu 10 352 0 543 277 74 25 chr13 18927793 18927995 -100816903 - MIR SINE MIR -2 260 49 2148 145 0 0 chr13 18928035 18928346 -100816552 - AluSx SINE Alu -1 311 1 1055 158 0 0 chr13 18928374 18928532 -100816366 - FRAM SINE Alu -18 158 1 2130 104 14 0 chr13 18928558 18928857 -100816041 + AluSx SINE Alu 1 303 0 2285 123 0 0 chr13 18928860 18929169 -100815729 + AluSq SINE Alu 1 309 -4 2156 135 0 13 chr13 18929170 18929482 -100815416 + AluSx SINE Alu 1 308 -4 4898 74 18 50 chr13 18929482 18929778 -100815120 + L1PA11 LINE L1 5490 5794 -380 2321 101 3 19 chr13 18929778 18930096 -100814802 + AluSp SINE Alu 1 313 0 4898 74 18 50 chr13 18930096 18930504 -100814394 + L1PA11 LINE L1 5794 6172 -2 2134 131 0 0 chr13 18930780 18931070 -100813828 + AluSx SINE Alu 5 294 -18 2226 102 0 0 chr13 18931074 18931387 -100813511 + AluSx SINE Alu 1 313 0 1986 146 0 14 chr13 18931440 18931727 -100813171 + AluJo SINE Alu 1 283 -29 259 125 152 18 chr13 18931899 18932011 -100812887 + (TTAAA)n Simple_repeat Simple_repeat 1 127 0 1650 139 25 86 chr13 18932338 18932475 -100812423 + AluJb SINE Alu 1 145 -167 2006 141 0 7 chr13 18932475 18932773 -100812125 + AluSc SINE Alu 1 296 -13 1650 139 25 86 chr13 18932773 18932959 -100811939 + AluJb SINE Alu 145 304 -8 2189 80 42 11 chr13 18932981 18933268 -100811630 - AluSp SINE Alu -17 296 1 1484 185 62 14 chr13 18933277 18933553 -100811345 - AluJo SINE Alu -23 289 1 1723 155 11 90 chr13 18933676 18934043 -100810855 + LTR9 LTR ERV1 1 338 -274 274 209 11 128 chr13 18934080 18934118 -100810780 + LTR9 LTR ERV1 347 388 -224 2325 87 0 0 chr13 18934118 18934405 -100810493 - AluSg SINE Alu -23 287 1 274 209 11 128 chr13 18934405 18934475 -100810423 + LTR9 LTR ERV1 388 438 -174 2433 88 0 3 chr13 18934729 18935035 -100809863 - AluSg SINE Alu 0 310 6 2498 77 0 3 chr13 18935086 18935396 -100809502 + AluY SINE Alu 1 309 -2 658 153 0 0 chr13 18935405 18935503 -100809395 - FRAM SINE Alu -37 139 42 2633 142 42 35 chr13 18935503 18935744 -100809154 + L1MB8 LINE L1 5649 5887 -291 1975 129 3 3 chr13 18935744 18936030 -100808868 + AluSx SINE Alu 5 290 -22 2633 142 42 35 chr13 18936030 18936309 -100808589 + L1MB8 LINE L1 5887 6173 -5 928 193 56 9 chr13 18936098 18936311 -100808587 + L1MB7 LINE L1 5955 6177 -7 841 171 0 34 chr13 18936313 18936459 -100808439 + AluJo SINE Alu 1 141 -171 2098 145 3 3 chr13 18936459 18936769 -100808129 + AluSx SINE Alu 1 310 -2 222 0 0 33 chr13 18936956 18936986 -100807912 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 1797 154 11 4 chr13 18936986 18937265 -100807633 - AluJb SINE Alu -1 311 2 434 192 10 39 chr13 18938012 18938116 -100806782 + MER31A LTR ERV1 353 453 -32 435 223 194 23 chr13 18938783 18938951 -100805947 - MIR SINE MIR -16 246 41 2042 120 7 7 chr13 18941644 18941936 -100802962 + AluSx SINE Alu 1 292 -20 326 259 96 22 chr13 18943412 18943547 -100801351 - L1ME4a LINE L1 -45 6076 5932 26 64 0 0 chr13 18944962 18945009 -100799889 + AT_rich Low_complexity Low_complexity 1 47 0 263 276 95 48 chr13 18945062 18945167 -100799731 + MIR SINE MIR 38 147 -61 2209 117 0 0 chr13 18946578 18946868 -100798030 + AluSx SINE Alu 1 290 -22 438 250 132 7 chr13 18947048 18947184 -100797714 - MIR SINE MIR -108 154 2 1470 198 59 7 chr13 18947252 18947540 -100797358 + AluJo SINE Alu 1 303 -9 1655 186 26 10 chr13 18948187 18948493 -100796405 + AluJb SINE Alu 1 311 -1 207 193 23 45 chr13 18949324 18949412 -100795486 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 22 35 0 0 chr13 18949602 18949631 -100795267 + AT_rich Low_complexity Low_complexity 1 29 0 1855 139 16 32 chr13 18949804 18950114 -100794784 + AluJb SINE Alu 1 305 -7 541 187 41 57 chr13 18950125 18950248 -100794650 + FRAM SINE Alu 2 122 -54 920 176 29 29 chr13 18950476 18950681 -100794217 - MER3 DNA MER1_type -3 206 2 320 300 25 0 chr13 18950747 18950867 -100794031 + L1ME1 LINE L1 6039 6161 -5 25 75 0 0 chr13 18951800 18951853 -100793045 + AT_rich Low_complexity Low_complexity 1 53 0 2285 102 3 3 chr13 18951935 18952239 -100792659 + AluSp SINE Alu 1 304 -9 22 35 0 0 chr13 18952344 18952373 -100792525 + AT_rich Low_complexity Low_complexity 1 29 0 654 271 134 4 chr13 18952634 18952861 -100792037 + MIR SINE MIR 6 256 -6 348 269 32 0 chr13 18953360 18953453 -100791445 - MER94 DNA DNA -15 119 24 197 274 0 95 chr13 18953709 18953793 -100791105 + L2 LINE L2 3197 3272 0 376 234 183 77 chr13 18954077 18954208 -100790690 - MIR SINE MIR 0 262 146 2452 64 0 0 chr13 18954208 18954506 -100790392 + AluY SINE Alu 1 298 -13 376 234 183 77 chr13 18954506 18954609 -100790289 - MIR SINE MIR -116 146 3 244 210 371 7 chr13 18954770 18954913 -100789985 + L1MC4 LINE L1 7466 7660 -382 354 261 54 8 chr13 18955114 18955244 -100789654 + L1MC4 LINE L1 7817 7952 -90 267 211 0 0 chr13 18955274 18955326 -100789572 + FAM SINE Alu 116 167 -12 2221 118 0 3 chr13 18955352 18955657 -100789241 + AluSg SINE Alu 1 304 -6 345 100 0 0 chr13 18955662 18955712 -100789186 + (TA)n Simple_repeat Simple_repeat 2 51 0 742 165 0 31 chr13 18955812 18955939 -100788959 + FLAM_C SINE Alu 1 123 -10 2233 93 6 19 chr13 18955949 18956081 -100788817 + AluSc SINE Alu 1 133 -176 2361 97 0 0 chr13 18956081 18956390 -100788508 + AluY SINE Alu 1 309 -2 2233 93 6 19 chr13 18956390 18956568 -100788330 + AluSc SINE Alu 133 307 -2 358 255 121 13 chr13 18956836 18956985 -100787913 - MIR SINE MIR -21 241 77 21 57 0 0 chr13 18957086 18957121 -100787777 + AT_rich Low_complexity Low_complexity 1 35 0 2202 144 0 0 chr13 18958052 18958358 -100786540 - AluSx SINE Alu -6 306 1 2259 115 0 10 chr13 18958533 18958845 -100786053 - AluSc SINE Alu 0 309 1 802 154 22 7 chr13 18959244 18959380 -100785518 - FLAM_C SINE Alu -1 142 5 29 0 0 0 chr13 18959899 18959928 -100784970 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 18960899 18960928 -100783970 + AT_rich Low_complexity Low_complexity 1 29 0 244 374 40 0 chr13 18961231 18961330 -100783568 - MIR3 SINE MIR -34 174 72 2339 101 7 0 chr13 18961898 18962195 -100782703 - AluSp SINE Alu -14 299 1 202 219 27 27 chr13 18963013 18963086 -100781812 + A-rich Low_complexity Low_complexity 5 77 0 246 196 61 20 chr13 18964238 18964334 -100780564 - MIR SINE MIR -72 136 81 21 0 0 0 chr13 18965321 18965342 -100779556 + AT_rich Low_complexity Low_complexity 1 21 0 249 100 0 0 chr13 18966407 18966447 -100778451 + Alu SINE Alu 94 133 -169 198 71 0 0 chr13 18967164 18967192 -100777706 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 2458 78 7 0 chr13 18967395 18967704 -100777194 - AluY SINE Alu 0 311 1 2032 146 0 0 chr13 18967865 18968159 -100776739 - AluJb SINE Alu -10 302 9 234 176 39 0 chr13 18968539 18968590 -100776308 - Charlie1 DNA MER1_type 0 2761 2709 1010 108 0 0 chr13 18968981 18969111 -100775787 + AluSx SINE Alu 1 130 -182 1075 139 48 0 chr13 18969176 18969341 -100775557 + AluSx SINE Alu 129 301 -11 243 0 0 0 chr13 18970433 18970460 -100774438 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 260 49 49 0 chr13 18970618 18970659 -100774239 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2187 110 0 0 chr13 18970661 18970943 -100773955 - AluSg SINE Alu -28 282 1 771 108 0 18 chr13 18970968 18971079 -100773819 - AluSq/x SINE Alu -202 110 2 2002 130 13 0 chr13 18971369 18971669 -100773229 - AluSq SINE Alu -9 304 1 2441 86 0 0 chr13 18971825 18972126 -100772772 + AluSx SINE Alu 1 301 -11 266 181 213 31 chr13 18972237 18972397 -100772501 - Charlie1 DNA MER1_type -49 2712 2524 2197 100 0 13 chr13 18972400 18972699 -100772199 + AluSq SINE Alu 1 295 -18 1394 151 19 31 chr13 18972758 18972930 -100771968 - AluJo SINE Alu -1 311 141 288 0 0 0 chr13 18972930 18972962 -100771936 + (TA)n Simple_repeat Simple_repeat 2 33 0 1394 151 19 31 chr13 18972962 18973047 -100771851 - AluJo SINE Alu -171 141 57 356 227 52 0 chr13 18973245 18973342 -100771556 - U13 snRNA snRNA -2 102 1 2860 182 51 49 chr13 18973411 18974282 -100770616 - L1MDa LINE L1 -4363 2177 1302 1553 146 18 18 chr13 18974282 18974556 -100770342 - AluSp SINE Alu -18 295 22 2000 142 23 3 chr13 18974699 18975001 -100769897 + AluSx SINE Alu 1 308 -4 294 262 39 0 chr13 18975001 18975104 -100769794 - MER87 LTR ERV1 -40 501 395 1230 183 19 23 chr13 18975119 18975382 -100769516 - LTR38 LTR ERV1 -161 395 134 800 102 0 70 chr13 18975499 18975627 -100769271 + FRAM SINE Alu 54 172 -4 2408 240 158 42 chr13 18975628 18976745 -100768153 - L1MDa LINE L1 -5220 1320 19 2013 134 30 0 chr13 18976799 18977097 -100767801 + AluSx SINE Alu 1 307 -5 2103 104 0 10 chr13 18977097 18977385 -100767513 + AluSg SINE Alu 1 285 -25 180 0 0 0 chr13 18977385 18977405 -100767493 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 536 188 10 0 chr13 18977411 18977507 -100767391 - MER3 DNA MER1_type -71 138 42 1140 196 113 48 chr13 18977809 18978145 -100766753 - MLT1A1 LTR MaLR 0 365 8 433 252 44 7 chr13 18978221 18978356 -100766542 - MER117 DNA MER1_type -57 140 1 181 270 162 40 chr13 18978561 18978615 -100766283 + MIR SINE MIR 19 86 -122 1232 139 16 84 chr13 18978615 18978652 -100766246 - MER46A DNA MER2_type -2495 236 198 1938 133 19 16 chr13 18978652 18978961 -100765937 + AluSx SINE Alu 1 310 -2 1232 139 16 84 chr13 18978961 18979174 -100765724 - MER46A DNA MER2_type -2533 198 3 181 270 162 40 chr13 18979174 18979193 -100765705 + MIR SINE MIR 86 101 -107 32 26 0 0 chr13 18979407 18979446 -100765452 + AT_rich Low_complexity Low_complexity 1 39 0 263 271 169 26 chr13 18979473 18979634 -100765264 - HAL1 LINE L1 -69 2438 2301 2575 48 0 10 chr13 18979634 18979944 -100764954 - AluY SINE Alu -4 307 1 263 271 169 26 chr13 18979944 18980125 -100764773 - HAL1 LINE L1 -206 2301 2047 2083 110 3 17 chr13 18980145 18980446 -100764452 - AluSp SINE Alu -16 297 1 240 33 0 0 chr13 18981405 18981435 -100763463 + LTR6A LTR ERV1 73 102 -462 283 278 11 0 chr13 18981615 18981705 -100763193 - HAL1 LINE L1 -615 1892 1802 1111 253 108 65 chr13 18981767 18982277 -100762621 - HAL1 LINE L1 -846 1661 1103 2495 61 3 6 chr13 18982277 18982589 -100762309 - AluY SINE Alu 0 311 1 1111 253 108 65 chr13 18982589 18982878 -100762020 - HAL1 LINE L1 -1404 1103 828 1169 126 6 6 chr13 18982880 18983043 -100761855 - AluSg/x SINE Alu -15 295 130 2335 93 3 3 chr13 18983043 18983345 -100761553 - AluSq SINE Alu -11 302 1 1169 126 6 6 chr13 18983345 18983356 -100761542 - AluSg/x SINE Alu -179 131 121 566 170 64 7 chr13 18983359 18983500 -100761398 - L1MB8 LINE L1 -5 6173 6025 25 31 0 0 chr13 18983512 18983544 -100761354 + AT_rich Low_complexity Low_complexity 1 32 0 2088 88 18 7 chr13 18983551 18983835 -100761063 - AluY SINE Alu -24 287 1 1227 143 12 12 chr13 18983889 18984134 -100760764 + L1M4 LINE L1 5255 5499 -675 1340 155 5 9 chr13 18984137 18984350 -100760548 + AluSx SINE Alu 1 212 -100 412 107 0 0 chr13 18984350 18984406 -100760492 + AluSg/x SINE Alu 76 131 -179 1016 110 0 0 chr13 18984510 18984646 -100760252 + AluSg/x SINE Alu 162 297 -13 2209 128 63 101 chr13 18984663 18984757 -100760141 - L1MB8 LINE L1 -170 6008 5912 2163 120 0 0 chr13 18984757 18985057 -100759841 - AluSx SINE Alu -12 300 1 2209 128 63 101 chr13 18985057 18985486 -100759412 - L1MB8 LINE L1 -266 5912 5505 1154 101 0 0 chr13 18985486 18985497 -100759401 - AluSq/x SINE Alu -163 149 139 2241 126 0 3 chr13 18985497 18985807 -100759091 - AluSx SINE Alu -3 309 1 1154 101 0 0 chr13 18985807 18985944 -100758954 - AluSq/x SINE Alu -172 140 1 1237 163 18 19 chr13 18985947 18986259 -100758639 - L1MB8 LINE L1 -675 5499 5190 760 104 0 9 chr13 18986261 18986376 -100758522 - AluSg/x SINE Alu 0 310 197 767 217 166 5 chr13 18986376 18986593 -100758305 + HAL1 LINE L1 1486 1737 -770 980 106 8 0 chr13 18986667 18986799 -100758099 - FLAM_C SINE Alu 0 133 1 595 111 56 0 chr13 18987048 18987138 -100757760 - AluSg/x SINE Alu -14 295 201 2041 102 4 0 chr13 18987141 18987406 -100757492 + AluSp SINE Alu 47 312 -1 260 229 110 37 chr13 18987427 18987536 -100757362 + HAL1 LINE L1 1729 1845 -662 392 254 0 87 chr13 18987611 18987709 -100757189 + HAL1 LINE L1 2159 2235 -272 1569 166 0 67 chr13 18987709 18988022 -100756876 + AluJb SINE Alu 1 292 -20 392 254 0 87 chr13 18988022 18988108 -100756790 + HAL1 LINE L1 2235 2327 -180 659 236 85 43 chr13 18988113 18988232 -100756666 - L1M4 LINE L1 -883 5263 5151 2387 85 7 3 chr13 18988232 18988539 -100756359 - AluSc SINE Alu -1 308 1 659 236 85 43 chr13 18988539 18988677 -100756221 - L1M4 LINE L1 -995 5151 4995 2246 102 0 20 chr13 18988921 18989224 -100755674 + AluSx SINE Alu 1 297 -15 199 305 102 8 chr13 18990270 18990338 -100754560 + MIR SINE MIR 79 139 -123 1346 158 17 70 chr13 18990338 18990636 -100754262 + AluJo SINE Alu 1 282 -30 357 24 0 0 chr13 18990637 18990679 -100754219 + (GA)n Simple_repeat Simple_repeat 1 42 0 199 305 102 8 chr13 18990679 18990736 -100754162 + MIR SINE MIR 138 218 -44 303 318 85 0 chr13 18991073 18991202 -100753696 + L2 LINE L2 3133 3272 0 2041 129 4 0 chr13 18991278 18991557 -100753341 + AluSg SINE Alu 1 280 -30 382 79 32 0 chr13 18991559 18991622 -100753276 + (TA)n Simple_repeat Simple_repeat 2 66 0 442 295 13 13 chr13 18991624 18991780 -100753118 + MIR SINE MIR 103 258 -4 2329 81 0 14 chr13 18991780 18992075 -100752823 + AluSg SINE Alu 1 291 -19 268 257 57 57 chr13 18992098 18992238 -100752660 + MIR3 SINE MIR 69 208 0 2493 115 37 91 chr13 18992246 18992732 -100752166 + L1MB2 LINE L1 5671 6130 -41 1131 68 0 0 chr13 18992732 18992865 -100752033 + AluYb8 SINE Alu 1 133 -185 2438 49 3 3 chr13 18992866 18993150 -100751748 + AluY SINE Alu 1 284 -27 275 0 0 28 chr13 18993161 18993197 -100751701 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2004 105 7 56 chr13 18993259 18993564 -100751334 + AluSq SINE Alu 1 290 -23 2318 109 0 10 chr13 18993958 18994271 -100750627 + AluY SINE Alu 2 311 0 306 366 6 0 chr13 18994568 18994732 -100750166 + (TGG)n Simple_repeat Simple_repeat 1 165 0 183 326 31 0 chr13 18995504 18995602 -100749296 - MIR SINE MIR -56 206 106 2224 183 25 27 chr13 18995658 18995792 -100749106 + L1MB3 LINE L1 5696 5829 -354 2159 118 0 29 chr13 18995792 18996107 -100748791 + AluSg SINE Alu 1 306 -4 2008 121 37 0 chr13 18996114 18996412 -100748486 + AluSx SINE Alu 2 310 -2 2224 183 25 27 chr13 18996412 18996756 -100748142 + L1MB3 LINE L1 5835 6181 -2 2315 77 0 7 chr13 18997353 18997651 -100747247 - AluY SINE Alu -15 296 1 187 245 0 0 chr13 18997714 18997763 -100747135 - L2 LINE L2 -9 3304 3256 382 287 68 94 chr13 18997790 18998055 -100746843 - L2 LINE L2 -5 3267 3010 253 73 18 109 chr13 18998214 18998269 -100746629 + LTR67 LTR ERVL 504 553 -4 2194 99 0 3 chr13 18998722 18999015 -100745883 - AluSg1 SINE Alu -17 292 1 1909 111 0 25 chr13 18999087 18999367 -100745531 - AluSx SINE Alu 0 312 40 242 167 0 0 chr13 18999732 18999768 -100745130 + Charlie1 DNA MER1_type 1 36 -2725 1232 190 28 120 chr13 18999780 18999890 -100745008 + Charlie1 DNA MER1_type 2347 2466 -295 2165 115 0 7 chr13 18999890 19000194 -100744704 + AluSx SINE Alu 1 302 -10 1232 190 28 120 chr13 19000194 19000540 -100744358 + Charlie1 DNA MER1_type 2466 2761 0 2155 115 6 19 chr13 19001336 19001649 -100743249 + AluSx SINE Alu 1 309 -3 2796 167 44 175 chr13 19001649 19002160 -100742738 - L1MB2 LINE L1 -134 6037 5461 2141 118 0 32 chr13 19002160 19002474 -100742424 - AluSx SINE Alu -8 304 1 2796 167 44 175 chr13 19002474 19002589 -100742309 - L1MB2 LINE L1 -710 5461 5333 279 241 0 0 chr13 19002589 19002647 -100742251 - AluYa5 SINE Alu -109 192 135 2796 167 44 175 chr13 19002647 19002762 -100742136 - L1MB2 LINE L1 -838 5333 5205 1458 150 117 36 chr13 19002762 19003036 -100741862 - AluSg SINE Alu -14 296 1 2013 126 0 46 chr13 19003046 19003348 -100741550 - AluJb SINE Alu -24 288 1 2796 167 44 175 chr13 19003348 19003418 -100741480 - L1MB2 LINE L1 -835 5336 5258 3226 168 66 45 chr13 19003570 19003670 -100741228 - L1MB2 LINE L1 -44 6127 6031 2284 96 0 19 chr13 19003670 19003983 -100740915 + AluSg SINE Alu 1 307 -3 3226 168 66 45 chr13 19003983 19004494 -100740404 - L1MB2 LINE L1 -140 6031 5498 2141 118 0 32 chr13 19004494 19004808 -100740090 - AluSx SINE Alu -8 304 1 3226 168 66 45 chr13 19004808 19004880 -100740018 - L1MB2 LINE L1 -673 5498 5429 27 0 0 0 chr13 19004881 19004908 -100739990 + AT_rich Low_complexity Low_complexity 1 27 0 279 241 0 0 chr13 19004923 19004981 -100739917 - AluYa5 SINE Alu -109 192 135 7099 185 54 44 chr13 19004982 19005096 -100739802 - L1M3 LINE L1 -745 5401 5290 1441 153 117 36 chr13 19005096 19005370 -100739528 - AluSg SINE Alu -14 296 1 2026 126 0 46 chr13 19005380 19005682 -100739216 - AluJb SINE Alu -24 288 1 7099 185 54 44 chr13 19005682 19006156 -100738742 - L1M3 LINE L1 -864 5282 4814 2424 47 7 13 chr13 19006156 19006457 -100738441 + AluY SINE Alu 2 300 -11 7099 185 54 44 chr13 19006457 19006870 -100738028 - L1M3 LINE L1 -1332 4814 4406 2492 33 40 10 chr13 19006870 19007171 -100737727 - AluY SINE Alu -1 310 1 7099 185 54 44 chr13 19007171 19007376 -100737522 - L1M3 LINE L1 -1740 4406 4204 2388 99 0 0 chr13 19007376 19007670 -100737228 + AluSq SINE Alu 1 294 -19 7099 185 54 44 chr13 19007670 19008287 -100736611 - L1M3 LINE L1 -1942 4204 3562 2369 106 0 0 chr13 19008314 19008626 -100736272 - AluSx SINE Alu 0 312 1 2274 105 0 3 chr13 19008631 19008935 -100735963 - AluY SINE Alu -8 303 1 1909 172 0 0 chr13 19008935 19009232 -100735666 - AluJb SINE Alu -14 298 2 1804 136 63 11 chr13 19009243 19009530 -100735368 - AluSg SINE Alu -4 306 5 763 208 65 4 chr13 19009540 19009785 -100735113 - L1M3 LINE L1 -2878 3268 3009 2734 124 12 23 chr13 19009799 19010227 -100734671 - LTR3 LTR ERVK -9 423 1 739 154 7 0 chr13 19010234 19010377 -100734521 - L1M3 LINE L1 -3138 3008 2865 2397 91 0 10 chr13 19010419 19010726 -100734172 - AluSx SINE Alu -8 304 1 264 172 0 0 chr13 19010740 19010798 -100734100 + A-rich Low_complexity Low_complexity 1 58 0 1809 125 59 7 chr13 19011436 19011724 -100733174 + AluSx SINE Alu 1 303 -9 1978 127 0 20 chr13 19011763 19012062 -100732836 + AluSx SINE Alu 5 297 -15 1875 127 76 0 chr13 19012082 19012357 -100732541 + AluSx SINE Alu 1 296 -16 1876 166 17 0 chr13 19012420 19012721 -100732177 - AluJb SINE Alu -6 306 1 654 201 174 0 chr13 19012782 19012931 -100731967 - AluSg/x SINE Alu 0 312 138 1102 177 5 0 chr13 19012933 19013119 -100731779 - AluJo SINE Alu -12 300 114 243 162 0 0 chr13 19013123 19013160 -100731738 + Alu SINE Alu 6 42 -259 198 245 41 0 chr13 19014112 19014161 -100730737 - MIR SINE MIR 0 262 212 809 200 35 0 chr13 19014225 19014395 -100730503 - MIR SINE MIR -70 192 17 327 292 102 0 chr13 19014993 19015130 -100729768 - L2 LINE L2 -8 3305 3155 1160 130 12 0 chr13 19015253 19015415 -100729483 - AluSg/x SINE Alu -19 291 128 561 283 88 4 chr13 19015486 19015712 -100729186 - MIR SINE MIR -2 260 16 1607 187 67 54 chr13 19016001 19016325 -100728573 + MSTD LTR MaLR 1 332 -64 2302 86 3 3 chr13 19016325 19016617 -100728281 + AluSx SINE Alu 1 292 -20 1607 187 67 54 chr13 19016617 19016683 -100728215 + MSTD LTR MaLR 332 396 0 182 298 0 18 chr13 19017335 19017392 -100727506 + MIR SINE MIR 37 92 -116 289 270 190 45 chr13 19017453 19017581 -100727317 + L1ME3 LINE L1 4561 4669 -1477 2095 119 6 44 chr13 19017581 19017901 -100726997 + AluSq SINE Alu 1 308 -5 289 270 190 45 chr13 19017901 19018257 -100726641 + L1ME3 LINE L1 4669 5115 -1031 2166 106 228 6 chr13 19018358 19018718 -100726180 - LTR12 LTR ERV1 -234 480 41 246 143 0 0 chr13 19018718 19018760 -100726138 - LTR30 LTR ERV1 -680 42 1 435 252 102 82 chr13 19018802 19018847 -100726051 + L1ME3 LINE L1 5258 5301 -863 747 289 65 59 chr13 19018847 19019353 -100725545 + MLT1J LTR MaLR 1 509 -2 435 252 102 82 chr13 19019353 19019541 -100725357 + L1ME3 LINE L1 5301 5484 -680 1415 177 130 0 chr13 19019541 19019795 -100725103 + AluSx SINE Alu 5 291 -21 435 252 102 82 chr13 19019795 19020227 -100724671 + L1ME3 LINE L1 5484 5939 -225 412 292 116 52 chr13 19020524 19020887 -100724011 + L1MEd LINE L1 88 473 -5732 251 227 163 23 chr13 19021136 19021308 -100723590 + L1MEd LINE L1 727 922 -5283 * 3393 167 86 63 chr13 19021304 19021768 -100723130 + L1MB3 LINE L1 5121 5573 -610 2478 73 0 3 chr13 19021768 19022071 -100722827 + AluSg SINE Alu 4 305 -5 3393 167 86 63 chr13 19022071 19022292 -100722606 + L1MB3 LINE L1 5573 5787 -396 1903 156 0 3 chr13 19022292 19022587 -100722311 + AluJb SINE Alu 5 298 -14 3393 167 86 63 chr13 19022587 19022860 -100722038 + L1MB3 LINE L1 5787 6099 -84 2359 88 0 7 chr13 19022888 19023183 -100721715 - AluY SINE Alu -18 293 1 334 229 73 37 chr13 19023266 19023375 -100721523 + L1ME3 LINE L1 6047 6159 -3 2245 131 0 6 chr13 19023439 19023753 -100721145 + AluSx SINE Alu 1 312 0 1953 157 130 3 chr13 19023824 19024200 -100720698 - MSTB LTR MaLR -2 424 1 2133 119 7 0 chr13 19024219 19024514 -100720384 + AluSq SINE Alu 1 297 -16 239 276 0 26 chr13 19024541 19024617 -100720281 + LTR33 LTR ERVL 41 114 -407 367 195 87 60 chr13 19024710 19024859 -100720039 + LTR33 LTR ERVL 369 521 0 580 286 83 25 chr13 19024927 19025326 -100719572 + L1MEd LINE L1 1317 1738 -4658 2324 91 7 0 chr13 19025381 19025679 -100719219 - AluSp SINE Alu -13 300 1 1385 179 31 45 chr13 19025706 19025997 -100718901 + AluJb SINE Alu 1 287 -25 360 119 0 0 chr13 19025999 19026058 -100718840 + (CAATC)n Simple_repeat Simple_repeat 2 60 0 1570 175 4 15 chr13 19026058 19026326 -100718572 - AluJb SINE Alu -47 265 1 693 215 0 15 chr13 19026350 19026485 -100718413 + FRAM SINE Alu 34 166 -10 2104 82 50 7 chr13 19026555 19026863 -100718035 - AluSp SINE Alu 0 313 1 351 283 66 11 chr13 19026935 19027270 -100717628 + L1MEd LINE L1 2033 2360 -3855 684 200 0 0 chr13 19027278 19027393 -100717505 + FLAM_C SINE Alu 9 123 -20 305 322 54 20 chr13 19027726 19027875 -100717023 + L1MEd LINE L1 2746 2899 -3316 305 186 186 85 chr13 19027899 19027945 -100716953 + L1MEd LINE L1 3201 3241 -2974 1919 139 10 10 chr13 19027945 19028246 -100716652 + AluSx SINE Alu 1 301 -11 305 186 186 85 chr13 19028246 19028398 -100716500 + L1MEd LINE L1 3241 3419 -2796 2382 86 13 0 chr13 19028406 19028708 -100716190 + AluSp SINE Alu 1 306 -7 332 272 28 67 chr13 19028746 19028926 -100715972 + L1MEd LINE L1 3646 3818 -2397 642 110 42 68 chr13 19028936 19029054 -100715844 + L1MA7 LINE L1 6174 6288 -3 2043 140 6 19 chr13 19029187 19029501 -100715397 + AluSx SINE Alu 1 310 -2 2187 121 0 13 chr13 19029503 19029808 -100715090 + AluSq SINE Alu 1 301 -12 1240 177 55 52 chr13 19029808 19029967 -100714931 + Looper DNA T2_type 341 503 -1055 1615 184 3 33 chr13 19029967 19030271 -100714627 - AluJb SINE Alu -17 295 1 1240 177 55 52 chr13 19030271 19030421 -100714477 + Looper DNA T2_type 503 651 -907 2255 82 7 33 chr13 19030422 19030726 -100714172 - AluSq SINE Alu -16 297 2 645 247 129 0 chr13 19030742 19030912 -100713986 - MER3 DNA MER1_type -1 208 17 2339 203 78 19 chr13 19030928 19031009 -100713889 + Looper DNA T2_type 662 737 -821 1086 200 43 0 chr13 19031009 19031219 -100713679 + MER20 DNA MER1_type 1 219 0 2339 203 78 19 chr13 19031219 19031703 -100713195 + Looper DNA T2_type 737 1260 -298 375 115 77 115 chr13 19031697 19031781 -100713117 + Looper DNA T2_type 1166 1247 -311 * 1957 163 0 3 chr13 19031781 19032087 -100712811 + AluJo SINE Alu 1 305 -7 375 115 77 115 chr13 19032087 19032106 -100712792 + Looper DNA T2_type 1247 1265 -293 1929 155 3 3 chr13 19032131 19032434 -100712464 + AluJb SINE Alu 1 303 -9 2193 105 3 40 chr13 19032440 19032765 -100712133 + AluSp SINE Alu 1 313 0 226 178 44 0 chr13 19032781 19032826 -100712072 + MER3 DNA MER1_type 41 87 -122 * 530 250 16 0 chr13 19032818 19032942 -100711956 - MER3 DNA MER1_type -82 127 2 417 235 8 53 chr13 19033042 19033174 -100711724 - MIR SINE MIR 0 262 137 2186 111 3 3 chr13 19033195 19033493 -100711405 + AluSx SINE Alu 1 298 -14 414 221 93 0 chr13 19033493 19033579 -100711319 - FLAM_A SINE Alu -20 113 20 404 111 79 0 chr13 19033630 19033723 -100711175 - AluSp/q SINE Alu 0 317 220 1980 104 0 4 chr13 19033752 19034003 -100710895 - AluSx SINE Alu -62 250 1 247 323 81 0 chr13 19034122 19034246 -100710652 - L2 LINE L2 -5 3267 3134 1183 157 63 22 chr13 19034295 19034518 -100710380 + AluJo SINE Alu 79 310 -2 287 296 139 12 chr13 19034565 19034737 -100710161 - L2 LINE L2 -213 3059 2866 713 150 8 24 chr13 19034806 19034933 -100709965 + MER45R DNA AcHobo 1457 1581 0 1971 93 12 99 chr13 19035073 19035405 -100709493 + AluSg SINE Alu 1 303 -7 2340 89 10 0 chr13 19035455 19035757 -100709141 - AluSp SINE Alu -8 305 1 2352 88 0 10 chr13 19036174 19036479 -100708419 + AluSq SINE Alu 1 302 -11 2144 136 0 0 chr13 19036511 19036812 -100708086 + AluSx SINE Alu 1 301 -11 2208 128 0 0 chr13 19036965 19037262 -100707636 + AluSx SINE Alu 1 297 -15 390 258 132 33 chr13 19037443 19037656 -100707242 - L1ME LINE L1 -297 5824 5591 340 320 98 40 chr13 19037905 19038377 -100706521 - L1ME LINE L1 -1539 4607 4109 342 230 30 22 chr13 19038450 19038585 -100706313 - L1ME LINE L1 -2146 4000 3865 237 323 0 50 chr13 19039010 19039109 -100705789 + L2 LINE L2 2981 3074 -198 209 284 0 118 chr13 19039302 19039357 -100705541 + MIR SINE MIR 76 110 -152 1947 121 25 18 chr13 19039357 19039667 -100705231 - AluSx SINE Alu 0 312 1 209 284 0 118 chr13 19039667 19039737 -100705161 + MIR SINE MIR 110 187 -75 2095 126 17 3 chr13 19039896 19040197 -100704701 + AluSq SINE Alu 1 305 -8 295 262 0 0 chr13 19040446 19040507 -100704391 - MER2 DNA MER2_type -212 133 73 478 140 68 33 chr13 19040510 19040718 -100704180 + AluJo SINE Alu 3 290 -22 323 221 0 93 chr13 19040732 19040818 -100704080 - MER2 DNA MER2_type -267 78 1 410 212 17 51 chr13 19040995 19041113 -100703785 + MIR SINE MIR 35 148 -60 589 233 69 80 chr13 19041573 19041720 -100703178 + MIR SINE MIR 2 146 -116 2309 83 10 0 chr13 19041720 19042009 -100702889 + AluSg SINE Alu 2 293 -17 589 233 69 80 chr13 19042009 19042123 -100702775 + MIR SINE MIR 146 260 -2 2110 130 3 0 chr13 19042227 19042526 -100702372 - AluSx SINE Alu -12 300 1 246 277 18 62 chr13 19042620 19042738 -100702160 + MIR SINE MIR 2 110 -104 27 62 0 0 chr13 19044543 19044591 -100700307 + GC_rich Low_complexity Low_complexity 1 48 0 2491 77 0 0 chr13 19044960 19045271 -100699627 - AluSx SINE Alu -1 311 1 1622 156 33 10 chr13 19045495 19045796 -100699102 + AluJb SINE Alu 1 308 -4 193 313 24 24 chr13 19045824 19045907 -100698991 - L3 LINE CR1 -22 1555 1473 180 247 56 79 chr13 19045972 19046061 -100698837 - L3 LINE CR1 -211 1366 1280 462 18 0 0 chr13 19046159 19046214 -100698684 + (TG)n Simple_repeat Simple_repeat 2 56 0 2110 115 4 0 chr13 19046215 19046493 -100698405 - AluSx SINE Alu -33 279 1 271 224 0 0 chr13 19046678 19046727 -100698171 + L2 LINE L2 3210 3258 -14 2216 94 3 39 chr13 19046945 19047253 -100697645 + AluSp SINE Alu 1 297 -16 2133 122 26 0 chr13 19047253 19047556 -100697342 + AluSx SINE Alu 1 311 -1 1888 150 0 23 chr13 19047561 19047867 -100697031 + AluJo SINE Alu 5 303 -9 2205 122 7 0 chr13 19047869 19048165 -100696733 + AluSx SINE Alu 1 298 -14 2236 96 36 0 chr13 19048165 19048466 -100696432 + AluSx SINE Alu 1 312 0 180 303 30 45 chr13 19048609 19048675 -100696223 - L3 LINE CR1 -5 1572 1508 1713 162 9 62 chr13 19048764 19048936 -100695962 - AluSx SINE Alu -8 304 124 186 43 0 0 chr13 19048936 19048959 -100695939 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2091 92 3 11 chr13 19048959 19049243 -100695655 - AluSc SINE Alu -27 282 1 2372 85 0 0 chr13 19049252 19049565 -100695333 - AluSq SINE Alu 0 313 1 1713 162 9 62 chr13 19049565 19049701 -100695197 - AluSx SINE Alu -195 117 1 217 224 64 66 chr13 19050193 19050299 -100694599 - MIR SINE MIR -5 203 85 193 336 44 44 chr13 19050323 19050460 -100694438 + MIR SINE MIR 14 150 -112 998 270 145 58 chr13 19050733 19051400 -100693498 + MER21B LTR ERV1 6 730 -133 442 223 9 9 chr13 19051546 19051658 -100693240 - MIR SINE MIR -56 206 95 2448 79 3 0 chr13 19051680 19051984 -100692914 - AluY SINE Alu -4 307 3 396 226 28 0 chr13 19051996 19052102 -100692796 + L1 LINE L1 2768 2876 -3270 264 172 0 0 chr13 19052107 19052165 -100692733 + T-rich Low_complexity Low_complexity 1 58 0 2397 91 0 10 chr13 19052180 19052487 -100692411 + AluSx SINE Alu 1 304 -8 739 154 7 0 chr13 19052529 19052672 -100692226 + L1 LINE L1 2865 3008 -3138 2734 124 12 23 chr13 19052679 19053107 -100691791 + LTR3 LTR ERVK 1 423 -9 763 208 65 4 chr13 19053121 19053366 -100691532 + L1 LINE L1 3009 3268 -2878 1804 136 63 11 chr13 19053376 19053663 -100691235 + AluSg SINE Alu 5 306 -4 2019 164 0 0 chr13 19053674 19053985 -100690913 + AluJb SINE Alu 2 312 0 2361 81 0 3 chr13 19053985 19054282 -100690616 + AluY SINE Alu 1 296 -15 29 0 0 0 chr13 19054282 19054311 -100690587 + AT_rich Low_complexity Low_complexity 1 29 0 460 102 0 153 chr13 19054311 19054409 -100690489 + AluSq SINE Alu 121 203 -110 993 74 0 0 chr13 19054444 19054566 -100690332 + AluSg/x SINE Alu 181 302 -8 583 214 15 30 chr13 19054601 19054732 -100690166 + FLAM_A SINE Alu 1 129 -4 609 154 164 34 chr13 19054734 19054778 -100690120 + Charlie1 DNA MER1_type 2478 2515 -246 2260 103 0 13 chr13 19054778 19055088 -100689810 - AluSq SINE Alu -7 306 1 609 154 164 34 chr13 19055088 19055251 -100689647 + Charlie1 DNA MER1_type 2515 2712 -49 2466 86 0 0 chr13 19055362 19055663 -100689235 - AluSx SINE Alu -11 301 1 2020 130 13 0 chr13 19055819 19056119 -100688779 + AluSq SINE Alu 1 304 -9 803 111 19 0 chr13 19056412 19056520 -100688378 + AluSq/x SINE Alu 1 110 -203 2208 110 0 0 chr13 19056545 19056870 -100688028 + AluSg SINE Alu 1 325 0 243 0 0 0 chr13 19057028 19057055 -100687843 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1078 139 48 0 chr13 19058147 19058312 -100686586 - AluSx SINE Alu -11 299 127 1016 108 0 0 chr13 19058377 19058507 -100686391 - AluSx SINE Alu -182 130 1 254 176 39 0 chr13 19058898 19058949 -100685949 + Charlie1 DNA MER1_type 2709 2761 0 2041 146 0 0 chr13 19059329 19059623 -100685275 + AluJb SINE Alu 9 302 -10 2486 78 7 0 chr13 19059784 19060093 -100684805 + AluY SINE Alu 1 311 0 198 71 0 0 chr13 19060296 19060324 -100684574 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 401 100 0 17 chr13 19061041 19061101 -100683797 - AluSc SINE Alu -178 131 73 2242 113 3 0 chr13 19061286 19061579 -100683319 - AluSx SINE Alu -18 294 1 889 154 0 0 chr13 19061579 19061715 -100683183 - AluSq/x SINE Alu -176 136 1 1640 188 122 26 chr13 19061717 19061759 -100683139 - LTR40c LTR ERVL -19 446 409 2303 114 21 15 chr13 19061759 19062093 -100682805 - MER1B DNA MER1_type -1 336 1 1640 188 122 26 chr13 19062093 19062427 -100682471 - LTR40c LTR ERVL -56 409 34 1017 272 101 8 chr13 19062458 19062833 -100682065 + L1MC4a LINE L1 5569 5978 -1830 2301 113 7 0 chr13 19062956 19063258 -100681640 - AluSx SINE Alu -8 304 1 1954 122 14 10 chr13 19063362 19063650 -100681248 - AluSq SINE Alu -24 289 1 2083 111 0 30 chr13 19063652 19063950 -100680948 - AluSx SINE Alu -23 289 1 189 0 0 0 chr13 19064813 19064834 -100680064 + (TG)n Simple_repeat Simple_repeat 2 22 0 2011 84 0 0 chr13 19066976 19067227 -100677671 - AluSx SINE Alu -6 306 56 1524 180 69 32 chr13 19067624 19068412 -100676486 + L1MB4 LINE L1 5017 5896 -284 1962 134 38 0 chr13 19068412 19068702 -100676196 + AluSq SINE Alu 1 301 -12 1524 180 69 32 chr13 19068702 19068964 -100675934 + L1MB4 LINE L1 5896 6147 -33 298 75 19 0 chr13 19069037 19069090 -100675808 + L1MB4 LINE L1 6127 6180 0 2246 106 0 3 chr13 19069213 19069514 -100675384 - AluSg SINE Alu -10 300 1 1913 156 45 66 chr13 19069873 19070051 -100674847 + Tigger2a DNA MER2_type 1 181 -2527 2084 139 3 3 chr13 19070051 19070361 -100674537 - AluSx SINE Alu -2 310 1 1913 156 45 66 chr13 19070361 19070624 -100674274 + Tigger2a DNA MER2_type 181 433 -1 29 60 0 0 chr13 19070813 19070863 -100674035 + AT_rich Low_complexity Low_complexity 1 50 0 22 88 0 0 chr13 19071303 19071360 -100673538 + AT_rich Low_complexity Low_complexity 1 57 0 250 284 37 12 chr13 19072015 19072096 -100672802 - MIR SINE MIR -149 113 31 304 327 80 34 chr13 19073329 19073592 -100671306 + L3b LINE CR1 1111 1385 -198 2319 99 3 0 chr13 19073606 19073910 -100670988 - AluSp SINE Alu -8 305 1 2485 72 3 3 chr13 19074009 19074315 -100670583 + AluSp SINE Alu 1 306 -7 2131 99 0 11 chr13 19075254 19075536 -100669362 - AluSx SINE Alu -33 279 1 375 174 14 0 chr13 19075797 19075866 -100669032 - L1 LINE L1 -1165 4981 4912 4280 144 61 29 chr13 19075872 19076759 -100668139 + L1MA4A LINE L1 4377 5235 -1068 2224 118 3 7 chr13 19076759 19077063 -100667835 + AluSx SINE Alu 1 303 -9 2345 95 3 0 chr13 19077066 19077362 -100667536 + AluSp SINE Alu 1 297 -16 4280 144 61 29 chr13 19077362 19078213 -100666685 + L1MA4A LINE L1 5236 6302 -1 2170 113 0 13 chr13 19078214 19078524 -100666374 + AluSx SINE Alu 1 306 -6 1230 123 0 0 chr13 19078905 19079075 -100665823 - AluSc SINE Alu 0 309 140 7483 63 150 4 chr13 19079076 19080142 -100664756 + MER11B LTR ERVK 1 1222 -14 1221 76 0 0 chr13 19080183 19080327 -100664571 - AluSc SINE Alu -165 144 1 1152 157 46 28 chr13 19080705 19080921 -100663977 - AluJb SINE Alu -26 286 67 1411 118 0 0 chr13 19080921 19081107 -100663791 + AluY SINE Alu 1 186 -125 404 208 13 0 chr13 19081136 19081213 -100663685 - AluJb SINE Alu -233 79 2 23 0 0 0 chr13 19081337 19081360 -100663538 + AT_rich Low_complexity Low_complexity 1 23 0 2780 153 50 21 chr13 19081775 19082310 -100662588 + L1MB4 LINE L1 5629 6179 -1 1605 160 14 34 chr13 19082835 19083129 -100661769 + AluJb SINE Alu 1 288 -24 1911 130 11 3 chr13 19083230 19083515 -100661383 - AluSx SINE Alu -25 287 1 1564 206 0 13 chr13 19083515 19083821 -100661077 - AluJo SINE Alu -8 304 3 1636 76 0 19 chr13 19083856 19084067 -100660831 + AluY SINE Alu 11 217 -94 757 185 14 0 chr13 19084170 19084316 -100660582 + AluSg/x SINE Alu 139 286 -26 585 186 16 16 chr13 19084313 19084437 -100660461 + AluSg/x SINE Alu 185 308 -4 * 1411 151 19 55 chr13 19084441 19084712 -100660186 - AluSx SINE Alu -21 291 31 1980 138 57 131 chr13 19084715 19085230 -100659668 - LTR12 LTR ERV1 -237 2201 55 227 176 39 20 chr13 19085230 19085281 -100659617 - LTR30 LTR ERV1 -670 52 1 * 238 176 147 0 chr13 19085281 19085314 -100659584 - AluS SINE Alu -260 43 1 257 140 20 20 chr13 19085281 19085331 -100659567 - AluSp SINE Alu -134 169 120 407 279 240 29 chr13 19085397 19085971 -100658927 + L2 LINE L2 2624 3305 -8 301 114 0 0 chr13 19086236 19086280 -100658618 - AluSx SINE Alu -251 48 5 1788 190 0 3 chr13 19086335 19086630 -100658268 + AluJb SINE Alu 1 294 -18 730 181 60 20 chr13 19086631 19086780 -100658118 + L1M4 LINE L1 3700 3854 -2292 1102 78 0 0 chr13 19086781 19086910 -100657988 + AluSg SINE Alu 2 130 -180 1520 111 0 0 chr13 19086920 19087127 -100657771 + AluSg SINE Alu 105 311 -1 1467 193 20 57 chr13 19087131 19087443 -100657455 + L1M4 LINE L1 3895 4194 -1952 814 120 0 113 chr13 19087443 19087593 -100657305 + FLAM_C SINE Alu 1 133 0 1467 193 20 57 chr13 19087593 19087633 -100657265 + L1M4 LINE L1 4194 4234 -1912 1368 125 15 4 chr13 19087635 19087827 -100657071 + L1M3 LINE L1 5471 5662 -509 1881 178 0 3 chr13 19087827 19088125 -100656773 + AluJo SINE Alu 16 312 0 1368 125 15 4 chr13 19088125 19088147 -100656751 + L1M3 LINE L1 5662 5682 -489 2424 88 0 10 chr13 19088268 19088576 -100656322 + AluSx SINE Alu 1 305 -7 307 287 113 0 chr13 19088701 19088816 -100656082 - LTR67 LTR ERVL -2 555 428 692 96 0 0 chr13 19088910 19089004 -100655894 - AluJb SINE Alu -209 103 10 255 250 0 0 chr13 19089420 19089480 -100655418 - MER5B DNA MER1_type 0 178 119 2046 54 0 8 chr13 19089720 19089961 -100654937 + AluY SINE Alu 62 300 -11 1644 113 16 23 chr13 19090020 19090276 -100654622 + AluSx SINE Alu 47 300 -12 553 107 0 0 chr13 19090835 19090910 -100653988 + FRAM/FAM SINE Alu 1 74 -102 1850 233 139 20 chr13 19091022 19091547 -100653351 + MLT1E2 LTR MaLR 1 598 -28 2027 114 32 38 chr13 19091547 19091729 -100653169 + MER44D DNA MER2_type 1 183 -2308 2469 96 0 3 chr13 19091729 19092042 -100652856 - AluSx SINE Alu 0 312 1 2027 114 32 38 chr13 19092042 19092200 -100652698 + MER44D DNA MER2_type 183 609 0 1850 233 139 20 chr13 19092200 19092233 -100652665 + MLT1E2 LTR MaLR 598 626 0 2435 88 0 0 chr13 19092799 19093095 -100651803 + AluSx SINE Alu 1 296 -16 2079 129 7 0 chr13 19093102 19093397 -100651501 + AluSx SINE Alu 1 297 -15 1285 133 68 117 chr13 19093403 19093712 -100651186 + AluJb SINE Alu 1 294 -18 318 287 131 8 chr13 19094639 19094761 -100650137 - L2 LINE L2 0 3272 3136 1203 183 5 0 chr13 19095200 19095413 -100649485 - AluJo SINE Alu -85 227 14 929 196 37 5 chr13 19095453 19095667 -100649231 - AluSp SINE Alu -25 288 68 2218 85 13 10 chr13 19096007 19096314 -100648584 + AluSp SINE Alu 3 310 -3 1638 172 10 3 chr13 19096330 19096627 -100648271 + AluJo SINE Alu 14 312 0 578 236 45 6 chr13 19096793 19096950 -100647948 - MLT1C LTR MaLR -49 418 256 216 204 0 23 chr13 19096976 19097020 -100647878 + CT-rich Low_complexity Low_complexity 4 46 0 872 154 7 0 chr13 19097029 19097172 -100647726 - AluJb SINE Alu -32 280 137 466 144 10 10 chr13 19097743 19097840 -100647058 + GA-rich Low_complexity Low_complexity 3 99 0 312 257 109 0 chr13 19097846 19097947 -100646951 + L2 LINE L2 3144 3255 -17 188 138 0 0 chr13 19098142 19098171 -100646727 + L2 LINE L2 3025 3053 -219 368 311 125 0 chr13 19098213 19098409 -100646489 + MIR SINE MIR 24 249 -13 1205 94 0 6 chr13 19100938 19101098 -100643800 + AluY SINE Alu 1 159 -152 369 389 12 0 chr13 19101287 19101454 -100643444 + G-rich Low_complexity Low_complexity 4 172 0 226 176 0 0 chr13 19101469 19101520 -100643378 + AluSp/q SINE Alu 253 303 0 1926 137 0 11 chr13 19101563 19101893 -100643005 - AluSx SINE Alu 0 327 1 694 146 182 16 chr13 19101901 19102093 -100642805 - L1MC5 LINE L1 -51 7910 7687 * 2367 176 63 37 chr13 19102072 19102289 -100642609 + L1M4 LINE L1 4143 4353 -1793 2293 173 73 7 chr13 19102289 19102716 -100642182 - MSTB2 LTR MaLR -2 455 1 2367 176 63 37 chr13 19102716 19103144 -100641754 + L1M4 LINE L1 4353 4805 -1341 2201 96 0 7 chr13 19103144 19103436 -100641462 + AluSg SINE Alu 1 290 -20 2416 179 39 42 chr13 19103553 19103620 -100641278 + L1M4 LINE L1 4783 4849 -1297 2215 90 10 7 chr13 19103620 19103910 -100640988 - AluSc SINE Alu -16 293 3 2416 179 39 42 chr13 19103910 19104097 -100640801 + L1M4 LINE L1 4849 5035 -1111 3467 79 23 0 chr13 19104097 19104540 -100640358 - MLT2A2 LTR ERVL 0 453 1 2416 179 39 42 chr13 19104540 19104882 -100640016 + L1M4 LINE L1 5035 5378 -768 1702 164 34 7 chr13 19104882 19105244 -100639654 + AluSx SINE Alu 1 370 0 11163 176 45 30 chr13 19105244 19105454 -100639444 + L1MB1 LINE L1 2761 2966 -3202 2307 107 0 10 chr13 19105454 19105762 -100639136 + AluSg SINE Alu 1 305 -5 11163 176 45 30 chr13 19105762 19107072 -100637826 + L1MB1 LINE L1 2966 4346 -1822 2121 119 10 3 chr13 19107072 19107365 -100637533 - AluSx SINE Alu -17 295 1 11163 176 45 30 chr13 19107365 19108510 -100636388 + L1MB1 LINE L1 4346 5472 -696 360 0 0 0 chr13 19108513 19108553 -100636345 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 548 132 0 0 chr13 19108558 19108634 -100636264 - AluJ SINE Alu -25 287 212 * 721 185 7 7 chr13 19108631 19108766 -100636132 - AluJ SINE Alu -164 148 14 3668 149 12 82 chr13 19108769 19109054 -100635844 + L1MB1 LINE L1 5452 5755 -413 709 177 8 0 chr13 19109054 19109184 -100635714 + FLAM_A SINE Alu 1 131 -2 3668 149 12 82 chr13 19109184 19109456 -100635442 + L1MB1 LINE L1 5755 5943 -225 2371 86 0 0 chr13 19109456 19109747 -100635151 + AluSx SINE Alu 5 295 -17 3668 149 12 82 chr13 19109747 19109957 -100634941 + L1MB1 LINE L1 5943 6166 -2 1926 110 26 55 chr13 19110028 19110364 -100634534 - AluSg SINE Alu 0 327 1 2467 82 3 0 chr13 19110365 19110670 -100634228 - AluSx SINE Alu -6 306 1 664 158 0 65 chr13 19110801 19110940 -100633958 - FLAM_C SINE Alu -12 131 2 1719 191 40 47 chr13 19111398 19111545 -100633353 - Charlie4a DNA MER1_type -1453 508 361 2446 98 30 8 chr13 19111545 19111911 -100632987 - THE1C LTR MaLR 0 375 2 1719 191 40 47 chr13 19111911 19112186 -100632712 - Charlie4a DNA MER1_type -1600 361 89 1989 115 33 0 chr13 19112475 19112745 -100632153 + AluSx SINE Alu 1 279 -33 201 39 0 0 chr13 19112747 19112773 -100632125 + (CAA)n Simple_repeat Simple_repeat 1 26 0 624 165 78 0 chr13 19113599 19113714 -100631184 - MER5A DNA MER1_type -5 184 61 1661 167 4 7 chr13 19113757 19114038 -100630860 - AluSx SINE Alu -31 281 2 328 225 28 0 chr13 19114589 19114660 -100630238 - MER5A DNA MER1_type -114 75 3 200 194 0 0 chr13 19114699 19114735 -100630163 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 2394 72 10 0 chr13 19114739 19115030 -100629868 - AluSg SINE Alu -16 294 1 1300 193 127 36 chr13 19115086 19115417 -100629481 + MER93b LTR ERV1 13 373 0 468 225 83 0 chr13 19115432 19115555 -100629343 - L1ME1 LINE L1 0 6334 6041 1884 172 0 0 chr13 19115567 19115858 -100629040 + AluJb SINE Alu 13 303 -9 1224 175 13 4 chr13 19116014 19116242 -100628656 - L1ME1 LINE L1 -134 6032 5803 24 53 0 0 chr13 19116323 19116361 -100628537 + AT_rich Low_complexity Low_complexity 1 38 0 892 179 24 126 chr13 19116382 19116628 -100628270 - AluJo SINE Alu -89 223 3 1460 193 56 11 chr13 19116658 19116927 -100627971 + AluJo SINE Alu 1 281 -31 324 0 0 0 chr13 19116927 19116963 -100627935 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2560 70 0 0 chr13 19117317 19117619 -100627279 - AluSx SINE Alu -10 302 1 1172 59 0 0 chr13 19117620 19117755 -100627143 - AluSq/x SINE Alu -177 135 1 913 171 96 64 chr13 19117760 19118011 -100626887 - MER33 DNA MER1_type -58 266 8 184 276 26 26 chr13 19118179 19118255 -100626643 - MIR3 SINE MIR -43 165 90 346 313 6 39 chr13 19118434 19118616 -100626282 - MER5A DNA MER1_type -13 176 1 1669 124 83 4 chr13 19118815 19119117 -100625781 + AluSx SINE Alu 5 327 0 23 33 0 0 chr13 19119156 19119186 -100625712 + AT_rich Low_complexity Low_complexity 1 30 0 1955 101 4 43 chr13 19119221 19119524 -100625374 + AluSq SINE Alu 17 308 0 22 0 0 0 chr13 19119592 19119614 -100625284 + AT_rich Low_complexity Low_complexity 1 22 0 1557 173 20 14 chr13 19119621 19119916 -100624982 + AluJo SINE Alu 1 297 -15 1631 175 158 25 chr13 19120513 19120671 -100624227 + MLT1C LTR MaLR 1 137 -330 2008 88 62 39 chr13 19120671 19120976 -100623922 + AluSx SINE Alu 1 312 0 1631 175 158 25 chr13 19120976 19121223 -100623675 + MLT1C LTR MaLR 137 460 -7 889 166 31 34 chr13 19121306 19121509 -100623389 - MLT1A1 LTR MaLR 0 374 144 1935 82 7 44 chr13 19123096 19123366 -100621532 + AluSq SINE Alu 34 293 -20 28 0 0 0 chr13 19123575 19123603 -100621295 + AT_rich Low_complexity Low_complexity 1 28 0 412 61 30 30 chr13 19123958 19124024 -100620874 - Alu SINE Alu -251 67 2 940 157 0 24 chr13 19124453 19124619 -100620279 - MLT1A1 LTR MaLR -203 162 1 272 271 47 9 chr13 19124883 19124990 -100619908 - L1ME LINE L1 -509 5612 5502 2465 53 10 3 chr13 19125072 19125374 -100619524 + AluY SINE Alu 1 304 -7 2317 91 0 7 chr13 19125384 19125698 -100619200 + AluSx SINE Alu 1 312 0 27 0 0 0 chr13 19125896 19125923 -100618975 + AT_rich Low_complexity Low_complexity 1 27 0 1849 227 75 98 chr13 19125979 19127125 -100617773 + L1MC5 LINE L1 6788 7907 -54 1047 110 0 0 chr13 19127185 19127321 -100617577 + AluSq/x SINE Alu 1 136 -176 2048 118 10 7 chr13 19127321 19127609 -100617289 + AluSx SINE Alu 1 289 -23 205 217 0 29 chr13 19128378 19128447 -100616451 + T-rich Low_complexity Low_complexity 5 71 0 764 169 0 0 chr13 19128450 19128568 -100616330 - FLAM_C SINE Alu -15 118 1 286 263 74 0 chr13 19128888 19128983 -100615915 - MLT1J LTR MaLR -98 413 312 775 62 71 18 chr13 19130836 19130948 -100613950 + MER30 DNA MER1_type 2 119 -111 2227 97 7 7 chr13 19130951 19131250 -100613648 + AluSx SINE Alu 1 299 -13 358 264 124 3 chr13 19131347 19131544 -100613354 + L1ME1 LINE L1 1325 1667 -5293 1522 287 85 36 chr13 19131560 19131653 -100613245 + L1ME1 LINE L1 1495 1582 -5556 1638 157 20 34 chr13 19131653 19131947 -100612951 - AluJb SINE Alu -22 290 1 1522 287 85 36 chr13 19131947 19132889 -100612009 + L1ME1 LINE L1 1582 2728 -4410 2541 60 0 10 chr13 19132895 19133209 -100611689 - AluY SINE Alu 0 311 1 708 90 0 63 chr13 19133260 19133371 -100611527 + MSTA LTR MaLR 1 104 -324 1910 122 3 83 chr13 19133371 19133698 -100611200 - AluSx SINE Alu -7 305 5 2299 105 0 0 chr13 19133710 19134005 -100610893 - AluSg SINE Alu -14 296 2 4898 207 60 100 chr13 19134008 19134649 -100610249 + L1ME1 LINE L1 4514 5179 -1798 2191 95 4 0 chr13 19134649 19134922 -100609976 + AluSc SINE Alu 1 274 -35 4898 207 60 100 chr13 19134922 19135066 -100609832 + L1ME1 LINE L1 5179 5327 -1650 4519 25 2 2 chr13 19135066 19135587 -100609311 + L1PA3 LINE L1 5634 6154 -1 4898 207 60 100 chr13 19135587 19136727 -100608171 + L1ME1 LINE L1 5327 6389 -588 669 202 0 0 chr13 19136727 19136841 -100608057 - FLAM_C SINE Alu -27 116 3 4898 207 60 100 chr13 19136841 19137340 -100607558 + L1ME1 LINE L1 6389 6907 -70 1918 84 4 48 chr13 19138101 19138374 -100606524 - AluSq SINE Alu -8 305 45 1039 217 63 3 chr13 19138603 19138889 -100606009 + MER33 DNA MER1_type 20 322 -2 27 29 0 0 chr13 19139044 19139078 -100605820 + AT_rich Low_complexity Low_complexity 1 34 0 2012 118 4 11 chr13 19139082 19139362 -100605536 - AluSx SINE Alu -34 278 1 273 57 0 0 chr13 19139385 19139420 -100605478 + (T)n Simple_repeat Simple_repeat 1 35 0 2293 103 3 0 chr13 19139521 19139822 -100605076 - AluSp SINE Alu -11 302 1 324 0 0 0 chr13 19139831 19139867 -100605031 + (T)n Simple_repeat Simple_repeat 1 36 0 262 200 0 14 chr13 19140141 19140211 -100604687 + AluY SINE Alu 129 197 -104 231 119 48 0 chr13 19140208 19140250 -100604648 + Alu SINE Alu 90 133 0 * 264 323 113 0 chr13 19140944 19141068 -100603830 + L3 LINE CR1 1276 1413 -164 306 304 0 0 chr13 19141200 19141358 -100603540 + (CA)n Simple_repeat Simple_repeat 1 158 0 349 210 0 0 chr13 19141364 19141426 -100603472 - MER5B DNA MER1_type -78 100 39 2297 131 0 6 chr13 19142010 19142324 -100602574 - AluSx SINE Alu 0 312 1 449 286 29 11 chr13 19142332 19142507 -100602391 - L1MC5 LINE L1 -37 7924 7747 377 58 0 0 chr13 19143131 19143183 -100601715 + MADE1 DNA Mariner 1 52 -28 528 128 0 0 chr13 19143523 19143601 -100601297 - AluSp/q SINE Alu -14 299 222 350 270 15 7 chr13 19143804 19143941 -100600957 + L1M4 LINE L1 4995 5132 -1014 2299 67 0 53 chr13 19143942 19144289 -100600609 + AluSq SINE Alu 1 331 0 451 291 268 0 chr13 19144365 19144544 -100600354 - MIR SINE MIR -1 261 35 1931 135 28 0 chr13 19144641 19144923 -100599975 + AluSx SINE Alu 3 292 -20 2318 120 3 0 chr13 19145659 19145967 -100598931 + AluSx SINE Alu 1 309 -3 962 133 0 14 chr13 19146112 19146255 -100598643 + FLAM_C SINE Alu 3 143 0 2161 124 17 0 chr13 19147005 19147296 -100597602 + AluSx SINE Alu 1 296 -16 2186 112 11 0 chr13 19147298 19147584 -100597314 + AluSx SINE Alu 1 289 -23 2266 116 3 0 chr13 19147586 19147889 -100597009 + AluSx SINE Alu 1 304 -8 343 291 68 0 chr13 19148531 19148648 -100596250 - L2 LINE L2 -25 3247 3123 219 139 0 0 chr13 19149487 19149523 -100595375 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 242 116 23 0 chr13 19149541 19149584 -100595314 + CT-rich Low_complexity Low_complexity 2 45 0 1799 180 0 19 chr13 19149584 19149901 -100594997 - AluJo SINE Alu -1 311 1 323 229 14 14 chr13 19150461 19150531 -100594367 + L2 LINE L2 3205 3274 -39 197 327 39 19 chr13 19150681 19150785 -100594113 + MIR SINE MIR 65 170 -92 1284 194 34 60 chr13 19151049 19151399 -100593499 + MER7C DNA MER2_type 1 341 -261 520 141 66 25 chr13 19151507 19151620 -100593278 + MER7C DNA MER2_type 316 433 -170 648 176 42 0 chr13 19151620 19151739 -100593159 + MER6 DNA MER2_type 1 124 -741 489 133 0 22 chr13 19151735 19151825 -100593073 + MER6 DNA MER2_type 778 865 0 * 1083 134 6 0 chr13 19151825 19151988 -100592910 + MER7C DNA MER2_type 439 602 0 2345 160 47 13 chr13 19152656 19153105 -100591793 - MER101 LTR ERV1 0 474 11 381 253 104 0 chr13 19153176 19153330 -100591568 - HAL1 LINE L1 -1599 908 739 219 36 0 0 chr13 19153494 19153522 -100591376 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2031 125 0 0 chr13 19153522 19153801 -100591097 - AluSx SINE Alu -33 279 1 208 182 18 55 chr13 19154551 19154606 -100590292 - L2 LINE L2 -1 3271 3219 600 330 51 3 chr13 19154775 19155129 -100589769 - L1ME LINE L1 -412 5758 5388 263 196 54 76 chr13 19155568 19155660 -100589238 + L2 LINE L2 2626 2715 -599 2208 118 3 3 chr13 19155660 19155957 -100588941 + AluSx SINE Alu 1 297 -15 1111 40 0 40 chr13 19155957 19156186 -100588712 + (TA)n Simple_repeat Simple_repeat 1 219 0 2166 89 3 74 chr13 19157552 19157888 -100587010 - AluSp SINE Alu -1 312 1 926 146 0 20 chr13 19157892 19158043 -100586855 - FRAM SINE Alu -8 168 21 2203 114 7 3 chr13 19159270 19159568 -100585330 - AluSq SINE Alu -14 299 1 1535 151 22 80 chr13 19159847 19159979 -100584919 + AluJb SINE Alu 1 139 -173 2211 135 0 3 chr13 19159979 19160290 -100584608 + AluSx SINE Alu 1 310 -2 1535 151 22 80 chr13 19160290 19160481 -100584417 + AluJb SINE Alu 139 305 -7 1737 164 12 49 chr13 19160718 19161042 -100583856 + AluJo SINE Alu 1 312 0 2026 135 0 13 chr13 19161043 19161346 -100583552 + AluJb SINE Alu 1 299 -13 2492 82 0 0 chr13 19161508 19161814 -100583084 + AluY SINE Alu 1 306 -5 2285 102 7 0 chr13 19161814 19162109 -100582789 + AluSp SINE Alu 1 297 -16 4198 126 38 7 chr13 19162109 19162960 -100581938 + L1MA4A LINE L1 5322 6302 -1 2199 113 0 25 chr13 19162961 19163281 -100581617 + AluSx SINE Alu 1 312 0 255 79 0 0 chr13 19164394 19164432 -100580466 + (CGGGGG)n Simple_repeat Simple_repeat 3 40 0 560 103 32 174 chr13 19166530 19166637 -100578261 - FLAM_C SINE Alu -169 133 53 222 37 0 0 chr13 19166637 19166664 -100578234 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 560 103 32 174 chr13 19166664 19166711 -100578187 - FLAM_C SINE Alu -249 53 1 192 250 36 18 chr13 19167827 19167883 -100577015 + MIR SINE MIR 34 90 -118 2501 85 0 3 chr13 19168812 19169119 -100575779 + AluSc SINE Alu 1 306 -3 208 342 26 13 chr13 19169331 19169407 -100575491 + L2 LINE L2 3171 3247 -25 1391 166 158 4 chr13 19170669 19170928 -100573970 + AluJo SINE Alu 2 300 -2 350 256 19 30 chr13 19171141 19171245 -100573653 + MIR SINE MIR 65 162 -46 198 292 0 0 chr13 19171618 19171666 -100573232 + L2 LINE L2 3223 3270 -2 261 262 56 19 chr13 19172376 19172483 -100572415 + L2 LINE L2 2420 2530 -784 2045 144 3 10 chr13 19172499 19172797 -100572101 - AluSx SINE Alu -14 298 3 226 238 16 32 chr13 19173618 19173681 -100571217 + LTR16A LTR ERVL 245 306 -144 1589 143 47 14 chr13 19174211 19174490 -100570408 + AluJb SINE Alu 12 299 -13 378 68 85 0 chr13 19175526 19175585 -100569313 - U6 snRNA snRNA -43 64 1 1446 179 65 21 chr13 19175585 19175875 -100569023 - AluJo SINE Alu -9 303 1 1060 129 101 60 chr13 19175932 19176149 -100568749 + AluSg/x SINE Alu 80 305 -7 23 0 0 0 chr13 19176191 19176214 -100568684 + AT_rich Low_complexity Low_complexity 1 23 0 2175 111 0 0 chr13 19176218 19176497 -100568401 + AluY SINE Alu 1 279 -32 198 0 0 0 chr13 19176500 19176522 -100568376 + (TAA)n Simple_repeat Simple_repeat 3 24 0 22 56 0 0 chr13 19176582 19176618 -100568280 + AT_rich Low_complexity Low_complexity 1 36 0 231 367 14 50 chr13 19177148 19177287 -100567611 + MIR3 SINE MIR 68 201 -7 544 233 48 0 chr13 19177502 19177648 -100567250 + MLT1H LTR MaLR 75 227 -322 330 266 86 22 chr13 19177710 19177849 -100567049 + MLT1H LTR MaLR 341 488 -67 1003 135 0 0 chr13 19177862 19178003 -100566895 + AluSg/x SINE Alu 148 288 -24 642 265 24 6 chr13 19178130 19178300 -100566598 - L1ME3A LINE L1 -295 5875 5703 251 242 11 105 chr13 19178800 19178895 -100566003 - MER91B DNA MER1_type -104 86 1 180 294 94 24 chr13 19178895 19178973 -100565925 - L2 LINE L2 -52 3220 3137 1534 204 7 0 chr13 19179312 19179596 -100565302 + AluJo SINE Alu 1 286 -26 285 276 72 23 chr13 19179620 19179798 -100565100 + MIR3 SINE MIR 6 186 -76 2018 152 7 3 chr13 19179984 19180287 -100564611 - AluSx SINE Alu -8 304 1 2451 83 0 0 chr13 19180590 19180892 -100564006 + AluSc SINE Alu 1 302 -7 1558 179 74 14 chr13 19181352 19181715 -100563183 + L1MB4 LINE L1 5790 6174 -6 1358 123 202 40 chr13 19181804 19182057 -100562841 + AluSg SINE Alu 1 294 -6 305 103 0 118 chr13 19183771 19183839 -100561059 - Alu SINE Alu -9 293 234 850 129 0 0 chr13 19183858 19183974 -100560924 - AluJb SINE Alu -196 116 1 2149 75 78 24 chr13 19185170 19185464 -100559434 + AluY SINE Alu 1 310 -1 2227 87 7 0 chr13 19187077 19187360 -100557538 + AluY SINE Alu 1 286 -21 181 0 0 0 chr13 19187360 19187380 -100557518 + (CAA)n Simple_repeat Simple_repeat 2 180 0 2073 87 11 7 chr13 19187449 19187736 -100557162 + AluSx SINE Alu 5 292 -20 21 0 0 0 chr13 19188371 19188392 -100556506 + GC_rich Low_complexity Low_complexity 1 21 0 461 65 0 0 chr13 19188596 19188658 -100556240 + Alu SINE Alu 240 301 -10 180 0 0 0 chr13 19188717 19188737 -100556161 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2227 97 0 0 chr13 19188761 19189059 -100555839 - AluSq SINE Alu -15 298 1 2150 29 39 72 chr13 19189777 19190083 -100554815 - AluY SINE Alu -15 296 1 1094 155 52 0 chr13 19190704 19190898 -100554000 - MLT1A1 LTR MaLR 0 365 162 898 124 14 0 chr13 19190900 19191045 -100553853 + AluSg/x SINE Alu 128 274 -38 1992 91 4 0 chr13 19191053 19191317 -100553581 + AluSp SINE Alu 1 265 -48 1803 100 0 4 chr13 19191315 19191555 -100553343 + AluSc SINE Alu 18 256 -53 * 296 188 0 0 chr13 19191563 19191611 -100553287 - MLT1A1 LTR MaLR -222 143 96 403 77 0 0 chr13 19192062 19192114 -100552784 - Alu SINE Alu -257 53 2 1970 120 7 7 chr13 19192270 19192561 -100552337 - AluSx SINE Alu -21 291 1 466 287 14 106 chr13 19192634 19192818 -100552080 - L2 LINE L2 0 3313 3162 1981 144 3 3 chr13 19192818 19193130 -100551768 + AluSx SINE Alu 1 312 0 466 287 14 106 chr13 19193130 19193227 -100551671 - L2 LINE L2 -151 3162 3058 1573 187 25 7 chr13 19193232 19193516 -100551382 + AluJb SINE Alu 1 289 -13 845 157 25 19 chr13 19193537 19193696 -100551202 + AluJo SINE Alu 122 281 -31 21 0 0 0 chr13 19193774 19193795 -100551103 + AT_rich Low_complexity Low_complexity 1 21 0 873 131 0 22 chr13 19193797 19193934 -100550964 - AluJb SINE Alu -178 134 1 1272 279 134 34 chr13 19193935 19194635 -100550263 + L1MC4a LINE L1 5260 6029 -1779 100 68 0 0 chr13 19194677 19194868 -100550030 + AT_rich Low_complexity Low_complexity 1 191 0 2128 121 0 0 chr13 19194869 19195166 -100549732 - AluSx SINE Alu -15 297 1 663 140 0 0 chr13 19195455 19195562 -100549336 - AluJ SINE Alu -9 303 197 * 783 162 120 0 chr13 19195556 19195698 -100549200 - AluJ SINE Alu -152 160 2 237 255 128 39 chr13 19195836 19195938 -100548960 + L2 LINE L2 3203 3313 0 210 125 0 83 chr13 19196728 19196776 -100548122 + (TAAAAA)n Simple_repeat Simple_repeat 5 48 0 254 65 87 0 chr13 19196786 19196832 -100548066 + FLAM SINE Alu 84 133 0 752 241 27 68 chr13 19196885 19196963 -100547935 + MIR SINE MIR 31 111 -151 1155 181 114 55 chr13 19196963 19197306 -100547592 + MLT1A1 LTR MaLR 3 365 0 752 241 27 68 chr13 19197306 19197447 -100547451 + MIR SINE MIR 111 241 -21 321 312 26 79 chr13 19197686 19197827 -100547071 + MER91B DNA MER1_type 2 132 -58 1871 147 3 10 chr13 19197827 19198126 -100546772 - AluSx SINE Alu -10 302 6 321 312 26 79 chr13 19198126 19198173 -100546725 + MER91B DNA MER1_type 132 180 -10 972 157 41 15 chr13 19198867 19199064 -100545834 - L1MB2 LINE L1 -2 6169 5968 261 0 0 0 chr13 19199117 19199146 -100545752 + (CA)n Simple_repeat Simple_repeat 1 29 0 1331 197 23 83 chr13 19199152 19199538 -100545360 - MLT1A1 LTR MaLR -2 363 1 2185 87 3 0 chr13 19199881 19200169 -100544729 + AluSp SINE Alu 20 308 -5 793 138 0 32 chr13 19200688 19200811 -100544087 + FLAM_C SINE Alu 7 125 -18 1670 106 0 0 chr13 19200822 19201048 -100543850 + AluSg SINE Alu 1 226 -84 1070 141 22 22 chr13 19201644 19201829 -100543069 + MER47A DNA MER2_type 24 208 -158 698 71 20 0 chr13 19201929 19202028 -100542870 + MER47A DNA MER2_type 181 281 -85 2128 106 3 0 chr13 19202031 19202323 -100542575 - AluSx SINE Alu -16 296 4 935 170 44 0 chr13 19202334 19202493 -100542405 - FAM SINE Alu -5 170 5 2305 84 0 0 chr13 19202520 19202816 -100542082 - AluSq SINE Alu -17 296 1 231 250 214 0 chr13 19202820 19202904 -100541994 + MER94 DNA DNA 28 129 -5 258 321 58 21 chr13 19202917 19203107 -100541791 + L2 LINE L2 2566 2762 -552 465 133 0 67 chr13 19203163 19203225 -100541673 - MLT1A1 LTR MaLR 0 365 309 2100 114 7 0 chr13 19203225 19203531 -100541367 + AluSx SINE Alu 1 308 -4 465 133 0 67 chr13 19203531 19203558 -100541340 - MLT1A1 LTR MaLR -56 309 282 877 201 37 123 chr13 19203600 19203924 -100540974 - MLT1A1 LTR MaLR -69 296 1 1654 136 19 49 chr13 19203982 19204119 -100540779 + AluJo SINE Alu 1 140 -172 2208 100 13 0 chr13 19204119 19204419 -100540479 + AluSx SINE Alu 1 304 -8 2333 68 0 6 chr13 19204419 19204730 -100540168 + AluY SINE Alu 1 309 -2 1654 136 19 49 chr13 19204730 19204899 -100539999 + AluJo SINE Alu 138 299 -13 656 105 61 18 chr13 19204901 19205015 -100539883 - L1MC/D LINE L1 -762 5571 5453 236 327 73 48 chr13 19205328 19205723 -100539175 - L2 LINE L2 -12 3260 2856 2196 92 3 3 chr13 19205902 19206207 -100538691 + AluSq SINE Alu 1 305 -8 544 154 106 49 chr13 19206255 19206378 -100538520 - FLAM_C SINE Alu -3 130 1 2457 126 32 7 chr13 19206379 19206783 -100538115 + L1MC1 LINE L1 5559 5972 -361 26 0 0 0 chr13 19206913 19206939 -100537959 + AT_rich Low_complexity Low_complexity 1 26 0 920 151 0 7 chr13 19207096 19207248 -100537650 - AluSg/x SINE Alu -13 297 147 2144 82 0 0 chr13 19207415 19207726 -100537172 + AluSg SINE Alu 9 310 0 270 276 125 48 chr13 19207797 19208037 -100536861 + L1ME3A LINE L1 5539 5810 -311 1854 133 7 0 chr13 19208037 19208322 -100536576 + AluSx SINE Alu 1 287 -25 270 276 125 48 chr13 19208322 19208392 -100536506 + L1ME3A LINE L1 5810 5873 -248 212 323 70 61 chr13 19208430 19208659 -100536239 - L2 LINE L2 -46 3226 2996 837 176 85 0 chr13 19208887 19209040 -100535858 + AluJb SINE Alu 137 302 -10 669 172 15 60 chr13 19209279 19209413 -100535485 - FLAM_C SINE Alu -1 132 5 1016 127 14 0 chr13 19209440 19209582 -100535316 - U4 snRNA snRNA -1 144 1 1755 97 4 12 chr13 19209653 19209912 -100534986 + AluSx SINE Alu 45 301 -11 2111 123 3 3 chr13 19210705 19211014 -100533884 + AluSq SINE Alu 1 309 -4 1822 142 33 0 chr13 19211019 19211321 -100533577 + AluJb SINE Alu 1 312 0 645 165 9 9 chr13 19211773 19211888 -100533010 + LTR56 LTR ERV1 4 118 -327 2366 65 0 0 chr13 19211892 19212186 -100532712 - AluY SINE Alu -17 294 1 21 36 0 0 chr13 19213192 19213220 -100531678 + AT_rich Low_complexity Low_complexity 1 28 0 341 260 30 0 chr13 19213228 19213328 -100531570 + L1ME3A LINE L1 6065 6167 -3 1301 212 42 3 chr13 19213328 19213611 -100531287 + AluJb SINE Alu 1 294 -18 2200 89 13 0 chr13 19213621 19213923 -100530975 + AluY SINE Alu 1 306 -5 1936 120 3 13 chr13 19213966 19214265 -100530633 + AluSx SINE Alu 1 296 -16 450 0 0 0 chr13 19215604 19215654 -100529244 + (TG)n Simple_repeat Simple_repeat 2 51 0 1609 124 29 18 chr13 19215662 19215937 -100528961 - AluJo SINE Alu -30 282 5 22 0 0 0 chr13 19216987 19217009 -100527889 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 19217445 19217466 -100527432 + AT_rich Low_complexity Low_complexity 1 21 0 224 261 15 46 chr13 19218634 19218699 -100526199 - MIR SINE MIR -4 258 196 2255 85 0 19 chr13 19219463 19219782 -100525116 + AluSq SINE Alu 1 313 0 255 242 0 30 chr13 19219952 19220018 -100524880 - L2 LINE L2 -325 2988 2925 30 59 0 0 chr13 19220622 19220673 -100524225 + GC_rich Low_complexity Low_complexity 1 51 0 27 29 0 0 chr13 19220784 19220818 -100524080 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 19220861 19220882 -100524016 + GC_rich Low_complexity Low_complexity 1 21 0 2212 86 3 3 chr13 19221678 19221979 -100522919 + AluSp SINE Alu 2 302 -11 936 154 0 57 chr13 19222744 19222919 -100521979 - FRAM SINE Alu -11 165 1 288 244 48 48 chr13 19223121 19223369 -100521529 + L1ME4a LINE L1 5676 5915 -206 458 266 202 6 chr13 19224012 19224185 -100520713 - MIR SINE MIR -25 237 31 2171 113 0 0 chr13 19224238 19224538 -100520360 + AluSg SINE Alu 1 300 -10 1967 124 0 0 chr13 19224798 19225100 -100519798 + AluSx SINE Alu 1 302 0 1516 125 136 15 chr13 19225344 19225608 -100519290 + AluJb SINE Alu 1 296 -16 233 138 0 17 chr13 19225634 19225692 -100519206 + (TTTTTG)n Simple_repeat Simple_repeat 5 61 0 439 177 38 20 chr13 19225706 19225844 -100519054 - AluJb SINE Alu -151 161 2 260 242 0 45 chr13 19225870 19225936 -100518962 + MER21B LTR ERV1 6 68 -795 2627 211 154 32 chr13 19225969 19226406 -100518492 + MER21B LTR ERV1 19 401 -462 1921 91 48 42 chr13 19226406 19226715 -100518183 - AluSx SINE Alu -1 311 1 2627 211 154 32 chr13 19226715 19227017 -100517881 + MER21B LTR ERV1 401 848 -15 1845 130 27 0 chr13 19227362 19227654 -100517244 - AluJb SINE Alu -8 304 5 1952 137 0 3 chr13 19227674 19227967 -100516931 - AluSx SINE Alu -20 292 1 330 37 0 37 chr13 19228038 19228092 -100516806 - L1MB3 LINE L1 -2 6181 6130 2009 70 11 15 chr13 19229105 19229375 -100515523 - AluY SINE Alu -11 300 32 1701 115 14 22 chr13 19229748 19230026 -100514872 - AluSx SINE Alu -12 300 25 857 162 61 71 chr13 19230876 19231074 -100513824 + AluJb SINE Alu 89 284 -28 2085 89 7 23 chr13 19231118 19231421 -100513477 + AluSg SINE Alu 1 298 -12 252 269 12 88 chr13 19231436 19231596 -100513302 - L1ME3 LINE L1 -81 6081 5934 1202 232 152 71 chr13 19231636 19232059 -100512839 - L1ME3 LINE L1 -219 5951 5564 1802 129 10 26 chr13 19232059 19232362 -100512536 - AluSq SINE Alu -15 298 1 1747 102 0 117 chr13 19232365 19232708 -100512190 - AluSx SINE Alu -9 303 1 1202 232 152 71 chr13 19232708 19232977 -100511921 - L1ME3 LINE L1 -607 5563 5197 2095 108 3 0 chr13 19234790 19235076 -100509822 - AluSx SINE Alu -25 287 1 993 99 0 0 chr13 19235115 19235246 -100509652 + AluSq/x SINE Alu 1 131 -182 306 284 31 62 chr13 19236120 19236282 -100508616 + MIR3 SINE MIR 50 206 -2 * 823 212 123 25 chr13 19236271 19236507 -100508391 + MIR SINE MIR 2 260 -2 1881 101 45 3 chr13 19236557 19236844 -100508054 - AluY SINE Alu -12 299 1 1384 170 69 22 chr13 19236927 19237203 -100507695 + AluJo SINE Alu 4 292 -20 228 35 0 0 chr13 19237203 19237232 -100507666 + (CATA)n Simple_repeat Simple_repeat 2 30 0 438 285 90 7 chr13 19237280 19237424 -100507474 + MIR SINE MIR 29 184 -78 2328 113 0 0 chr13 19237658 19237958 -100506940 + AluSx SINE Alu 1 300 -12 1506 133 0 5 chr13 19238200 19238410 -100506488 + AluJb SINE Alu 1 209 -103 2216 121 82 3 chr13 19238410 19238637 -100506261 - MER83B LTR ERV1 0 378 114 1553 128 139 4 chr13 19238637 19238903 -100505995 + AluJb SINE Alu 1 302 0 2216 121 82 3 chr13 19238903 19239015 -100505883 - MER83B LTR ERV1 -264 114 12 286 108 0 0 chr13 19239014 19239051 -100505847 + AluJ/FRAM SINE Alu 230 266 -36 * 180 111 0 0 chr13 19239095 19239122 -100505776 + (A)n Simple_repeat Simple_repeat 1 27 0 1803 152 10 14 chr13 19239310 19239599 -100505299 + AluJb SINE Alu 1 288 -24 405 55 0 0 chr13 19240282 19240337 -100504561 - L1PB1 LINE L1 -3 6148 6094 2404 86 0 9 chr13 19240338 19240653 -100504245 - AluSx SINE Alu 0 312 1 2239 157 86 80 chr13 19240654 19240772 -100504126 - L1MB4 LINE L1 -43 6137 6021 439 152 248 38 chr13 19240772 19240877 -100504021 - FLAM_A SINE Alu -5 128 2 2239 157 86 80 chr13 19240877 19241349 -100503549 - L1MB4 LINE L1 -159 6021 5543 837 194 15 77 chr13 19242092 19242152 -100502746 - MLT2C1 LTR ERVL -4 393 331 2541 65 0 3 chr13 19242152 19242458 -100502440 + AluSg SINE Alu 2 306 -4 837 194 15 77 chr13 19242458 19242730 -100502168 - MLT2C1 LTR ERVL -66 331 18 419 202 121 0 chr13 19242988 19243087 -100501811 + Tigger4(Zombi) DNA MER2_type 2 112 -2619 1302 71 0 0 chr13 19243092 19243246 -100501652 - AluSg/x SINE Alu -11 301 148 1100 168 58 0 chr13 19243246 19243454 -100501444 + Tigger4(Zombi) DNA MER2_type 2511 2730 -1 2101 101 3 42 chr13 19243538 19243844 -100501054 - AluSx SINE Alu -17 295 2 387 242 73 84 chr13 19244014 19244087 -100500811 - MER104 DNA Tc2 -1720 178 106 2264 88 7 14 chr13 19244087 19244381 -100500517 + AluSx SINE Alu 1 292 -20 387 242 73 84 chr13 19244381 19244485 -100500413 - MER104 DNA Tc2 -1792 106 3 252 246 304 7 chr13 19246235 19246373 -100498525 + MIR SINE MIR 81 259 -3 370 238 0 12 chr13 19247520 19247600 -100497298 + Tigger5 DNA MER2_type 1 79 -2244 280 307 0 0 chr13 19247603 19247678 -100497220 - Tigger5 DNA MER2_type -7 2316 2242 * 356 197 56 0 chr13 19247672 19247743 -100497155 + Tigger5 DNA MER2_type 2246 2320 -3 2172 118 23 0 chr13 19248661 19248965 -100495933 + AluSx SINE Alu 1 311 -1 2162 102 0 0 chr13 19249004 19249278 -100495620 + AluSg SINE Alu 1 274 -36 231 36 0 0 chr13 19249280 19249308 -100495590 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 191 326 119 47 chr13 19249359 19249595 -100495303 - L2 LINE L2 -25 3247 2995 330 213 185 0 chr13 19249848 19249956 -100494942 + MIR SINE MIR 117 244 -18 353 274 85 81 chr13 19249999 19250247 -100494651 - L2 LINE L2 -52 3261 3013 344 206 103 59 chr13 19250248 19250384 -100494514 - MLT1K LTR MaLR -2 586 445 327 267 204 0 chr13 19250664 19250855 -100494043 - L2 LINE L2 -338 2976 2747 2812 83 8 0 chr13 19251046 19251406 -100493492 + THE1B LTR MaLR 2 364 0 887 269 201 5 chr13 19251406 19251845 -100493053 + L2 LINE L2 1689 2213 -1101 27 29 0 0 chr13 19251945 19251979 -100492919 + AT_rich Low_complexity Low_complexity 1 34 0 1832 74 0 0 chr13 19253435 19253651 -100491247 - AluSc SINE Alu -13 296 81 1864 158 3 0 chr13 19254369 19254654 -100490244 - AluJb SINE Alu -26 286 1 270 73 0 0 chr13 19254841 19254882 -100490016 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1313 160 0 50 chr13 19254885 19255123 -100489775 - AluJo SINE Alu -30 282 57 707 212 8 0 chr13 19255425 19255557 -100489341 + FLAM_A SINE Alu 1 133 0 246 282 58 0 chr13 19255888 19255991 -100488907 + L1ME LINE L1 5675 5783 -338 2349 86 0 10 chr13 19256239 19256540 -100488358 + AluSq SINE Alu 1 298 -15 468 289 0 0 chr13 19256540 19256720 -100488178 + (TA)n Simple_repeat Simple_repeat 1 180 0 225 239 0 0 chr13 19256773 19256819 -100488079 - L1MC4 LINE L1 -1339 6703 6658 247 309 0 0 chr13 19256845 19256942 -100487956 - L1MC4 LINE L1 -1327 6668 6612 201 268 0 0 chr13 19256945 19256986 -100487912 + (CATA)n Simple_repeat Simple_repeat 4 44 0 241 267 35 12 chr13 19256987 19257073 -100487825 + L1MC4 LINE L1 6614 6701 -1341 201 195 0 0 chr13 19257076 19257117 -100487781 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2886 16 0 0 chr13 19257630 19257941 -100486957 + AluYb8 SINE Alu 1 311 -7 1978 136 71 0 chr13 19258093 19258417 -100486481 - MER7A DNA MER2_type 0 346 2 2204 101 3 13 chr13 19259196 19259502 -100485396 + AluSg SINE Alu 6 308 -2 1114 135 29 48 chr13 19259871 19260078 -100484820 - MER3 DNA MER1_type 0 209 7 367 260 185 33 chr13 19260194 19260621 -100484277 - L1ME4a LINE L1 -68 6053 5562 299 170 20 0 chr13 19261040 19261140 -100483758 - L1ME4a LINE L1 -731 5439 5365 2093 106 14 7 chr13 19261147 19261439 -100483459 - AluSx SINE Alu -18 294 1 2533 41 3 0 chr13 19261444 19261736 -100483162 - AluY SINE Alu -17 294 2 1691 138 36 56 chr13 19263849 19264153 -100480745 + AluSx SINE Alu 1 298 -14 367 175 299 0 chr13 19264211 19264308 -100480590 + FLAM_A SINE Alu 1 126 -7 1974 112 4 4 chr13 19264316 19264583 -100480315 + AluSx SINE Alu 1 267 -45 988 102 0 0 chr13 19264707 19264835 -100480063 + AluSq/x SINE Alu 8 135 -177 1851 126 3 50 chr13 19264835 19265137 -100479761 + AluSx SINE Alu 1 288 -24 34 42 0 0 chr13 19265140 19265188 -100479710 + AT_rich Low_complexity Low_complexity 1 48 0 582 89 0 170 chr13 19265445 19265493 -100479405 + L1MA3 LINE L1 6093 6148 -157 2191 110 0 13 chr13 19265493 19265793 -100479105 + AluSc SINE Alu 1 296 -13 582 89 0 170 chr13 19265793 19265805 -100479093 + L1MA3 LINE L1 6148 6160 -145 1424 175 110 0 chr13 19265805 19266068 -100478830 + AluJb SINE Alu 1 292 -20 582 89 0 170 chr13 19266068 19266141 -100478757 + L1MA3 LINE L1 6160 6204 -101 491 150 62 0 chr13 19266288 19266368 -100478530 + FRAM SINE Alu 64 148 -28 739 193 7 0 chr13 19266379 19266514 -100478384 + FLAM_C SINE Alu 2 137 -6 572 125 0 0 chr13 19266708 19266796 -100478102 - AluJo SINE Alu -11 301 214 975 152 0 7 chr13 19266796 19266947 -100477951 - AluJo SINE Alu -162 150 1 477 127 0 13 chr13 19266998 19267077 -100477821 - AluJ/FRAM SINE Alu -9 303 226 1953 132 21 0 chr13 19267112 19267399 -100477499 + AluSx SINE Alu 2 294 -18 2014 149 0 0 chr13 19267576 19267865 -100477033 + AluSx SINE Alu 4 292 -20 201 279 128 0 chr13 19268169 19268255 -100476643 - MIR SINE MIR -74 188 92 2569 77 0 0 chr13 19268384 19268694 -100476204 - AluY SINE Alu -1 310 1 182 302 38 0 chr13 19268932 19268985 -100475913 - L2 LINE L2 -200 3072 3018 21 71 0 0 chr13 19269186 19269228 -100475670 + AT_rich Low_complexity Low_complexity 1 42 0 876 206 11 17 chr13 19269291 19269466 -100475432 + FRAM SINE Alu 1 173 -3 7193 56 8 0 chr13 19269471 19269699 -100475199 + L1PA7 LINE L1 4771 4996 -1158 2333 64 0 48 chr13 19269699 19270010 -100474888 + AluY SINE Alu 1 296 -15 7193 56 8 0 chr13 19270010 19271162 -100473736 + L1PA7 LINE L1 4996 6154 0 2393 83 0 13 chr13 19271167 19271468 -100473430 + AluSp SINE Alu 1 297 -16 216 273 57 23 chr13 19271763 19271851 -100473047 + L2 LINE L2 1177 1267 -2047 25 0 0 0 chr13 19271851 19271876 -100473022 + AT_rich Low_complexity Low_complexity 1 25 0 7667 25 1 225 chr13 19271876 19273250 -100471648 - SVA Other Other 0 1386 321 2392 145 75 91 chr13 19273350 19273833 -100471065 + Charlie1 DNA MER1_type 2138 2610 -151 1535 184 3 51 chr13 19273833 19274018 -100470880 - AluJo SINE Alu -12 300 135 2231 90 3 17 chr13 19274018 19274317 -100470581 + AluY SINE Alu 1 295 -16 1535 184 3 51 chr13 19274317 19274446 -100470452 - AluJo SINE Alu -177 135 1 2392 145 75 91 chr13 19274446 19274577 -100470321 + Charlie1 DNA MER1_type 2610 2742 -19 199 204 91 0 chr13 19274653 19274697 -100470201 + L2 LINE L2 3263 3310 -3 784 105 26 20 chr13 19275687 19275840 -100469058 + CT-rich Low_complexity Low_complexity 3 156 0 1902 166 3 16 chr13 19275843 19276156 -100468742 - AluJb SINE Alu -3 309 1 209 373 63 24 chr13 19276867 19276993 -100467905 - L2 LINE L2 0 3272 3142 2249 120 3 0 chr13 19277054 19277354 -100467544 + AluSx SINE Alu 1 301 -11 254 143 24 0 chr13 19277469 19277511 -100467387 + L1MC5 LINE L1 7182 7224 -737 21 0 0 0 chr13 19277542 19277563 -100467335 + AT_rich Low_complexity Low_complexity 1 21 0 860 188 24 42 chr13 19277620 19277833 -100467065 + L1MC5 LINE L1 7259 7467 -494 202 182 0 0 chr13 19277864 19277897 -100467001 + (CA)n Simple_repeat Simple_repeat 2 34 0 3812 158 64 97 chr13 19277898 19278822 -100466076 + MER21A LTR ERV1 13 905 -26 225 275 82 48 chr13 19278896 19279165 -100465733 + L1MC5 LINE L1 7502 7779 -182 3624 172 28 38 chr13 19279174 19279936 -100464962 + L1MB8 LINE L1 5374 6127 -51 436 309 85 5 chr13 19280015 19280203 -100464695 + MIR SINE MIR 29 231 -31 2220 127 0 0 chr13 19280230 19280530 -100464368 - AluSx SINE Alu -12 300 1 23 0 0 0 chr13 19281293 19281316 -100463582 + AT_rich Low_complexity Low_complexity 1 23 0 213 301 21 11 chr13 19282601 19282694 -100462204 + MIR SINE MIR 20 113 -149 242 118 97 54 chr13 19283168 19283261 -100461637 + MER63 DNA MER1_type 875 971 -91 2813 165 104 140 chr13 19283261 19283898 -100461000 - L1MC3 LINE L1 -13 7772 7117 287 209 15 15 chr13 19283898 19283965 -100460933 - MLT1F1 LTR MaLR -459 108 42 2813 165 104 140 chr13 19283965 19284314 -100460584 - L1MC3 LINE L1 -668 7117 6757 1440 281 67 25 chr13 19284336 19284931 -100459967 - L1MEc LINE L1 -5746 650 31 513 158 0 0 chr13 19285268 19285350 -100459548 + AluSg/x SINE Alu 218 299 -11 5630 146 44 29 chr13 19285481 19286732 -100458166 - L1MA9 LINE L1 0 6312 5043 306 143 0 0 chr13 19286730 19286779 -100458119 + L1MA9 LINE L1 4989 5037 -1109 * 638 311 65 26 chr13 19286782 19287200 -100457698 + L2 LINE L2 1033 1466 -1848 5072 84 1 3 chr13 19287343 19288012 -100456886 - THE1A-int LTR MaLR -912 668 1 2729 86 11 0 chr13 19288012 19288363 -100456535 - THE1A LTR MaLR 0 355 1 331 244 118 16 chr13 19288384 19288511 -100456387 - L2 LINE L2 -940 2374 2235 2190 168 7 30 chr13 19288638 19289042 -100455856 + MSTD LTR MaLR 2 396 0 831 216 52 43 chr13 19289269 19289499 -100455399 - MLT1A1 LTR MaLR 0 365 134 296 95 24 0 chr13 19289499 19289541 -100455357 - MLT1A1 LTR MaLR 0 457 415 1449 83 0 0 chr13 19289541 19289734 -100455164 + L1MA2 LINE L1 6112 6304 0 1165 180 50 116 chr13 19289754 19290116 -100454782 - MLT1A1 LTR MaLR -25 340 3 2846 192 33 6 chr13 19290132 19290652 -100454246 - MLT1A1-int LTR MaLR -6 1729 1196 1025 218 92 23 chr13 19290654 19290916 -100453982 - MLT2B3 LTR ERVL -237 317 38 419 171 12 37 chr13 19290947 19291029 -100453869 - MLT2B3 LTR ERVL -472 82 3 * 912 121 7 7 chr13 19291029 19291169 -100453729 - MLT1A1 LTR MaLR -225 140 1 2207 109 3 13 chr13 19291314 19291618 -100453280 - AluSx SINE Alu -11 301 1 918 198 0 0 chr13 19291678 19291840 -100453058 - FAM SINE Alu -13 162 1 21 36 0 0 chr13 19291963 19291991 -100452907 + AT_rich Low_complexity Low_complexity 1 28 0 327 311 0 0 chr13 19292359 19292449 -100452449 - L1MC4 LINE L1 -1339 6703 6614 204 217 0 0 chr13 19292461 19292507 -100452391 + (TA)n Simple_repeat Simple_repeat 2 47 0 236 233 0 17 chr13 19292510 19292570 -100452328 - L1MCa LINE L1 -4362 2064 2006 260 167 93 0 chr13 19292615 19292669 -100452229 - L1MCa LINE L1 -4362 2064 2006 567 212 24 12 chr13 19292680 19292845 -100452053 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 232 200 0 0 chr13 19292852 19292907 -100451991 - L1MC4 LINE L1 -1339 6703 6649 326 292 0 0 chr13 19292934 19293023 -100451875 - L1MC4 LINE L1 -1339 6703 6615 250 296 23 0 chr13 19293048 19293136 -100451762 - L1MC4 LINE L1 -1339 6703 6614 238 309 0 0 chr13 19293189 19293278 -100451620 + L1MD3 LINE L1 6612 6668 -1327 254 311 0 15 chr13 19293279 19293411 -100451487 + (TATG)n Simple_repeat Simple_repeat 1 130 0 236 217 0 0 chr13 19293416 19293462 -100451436 + L1MC4 LINE L1 6658 6703 -1339 386 229 0 8 chr13 19293469 19293581 -100451317 + (TA)n Simple_repeat Simple_repeat 2 113 0 2361 80 0 13 chr13 19293581 19293883 -100451015 - AluSq SINE Alu -15 298 1 427 303 89 10 chr13 19293923 19294164 -100450734 - L1ME LINE L1 -301 5869 5613 2620 45 0 13 chr13 19295273 19295584 -100449314 - AluY SINE Alu -4 307 1 540 277 31 67 chr13 19297201 19297425 -100447473 + L1ME3A LINE L1 5691 5906 -264 820 210 112 33 chr13 19297472 19297519 -100447379 + MSTA LTR MaLR 1 43 -385 2240 130 16 24 chr13 19297519 19297896 -100447002 + THE1C LTR MaLR 1 374 -1 820 210 112 33 chr13 19297896 19298062 -100446836 + MSTA LTR MaLR 43 231 -197 * 1176 140 34 0 chr13 19298047 19298225 -100446673 + MSTA LTR MaLR 245 428 0 9752 167 16 4 chr13 19298225 19299854 -100445044 + MSTA-int LTR MaLR 1 1649 -2 1992 148 154 0 chr13 19299862 19300233 -100444665 + MSTA LTR MaLR 1 428 0 248 203 27 0 chr13 19301346 19301420 -100443478 + CT-rich Low_complexity Low_complexity 3 78 0 450 0 0 0 chr13 19301640 19301690 -100443208 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 3473 156 84 90 chr13 19302051 19302498 -100442400 + L1MDa LINE L1 944 1392 -5148 2134 127 0 13 chr13 19302498 19302806 -100442092 + AluSx SINE Alu 1 304 -8 3473 156 84 90 chr13 19302806 19302827 -100442071 + L1MDa LINE L1 1392 1412 -5128 2268 107 0 0 chr13 19302827 19303127 -100441771 + AluSc SINE Alu 1 300 -9 3473 156 84 90 chr13 19303127 19303303 -100441595 + L1MDa LINE L1 1412 1588 -4952 1877 101 0 0 chr13 19303303 19303573 -100441325 + AluSg SINE Alu 36 305 0 3473 156 84 90 chr13 19303573 19303855 -100441043 + L1MDa LINE L1 1588 1869 -4671 2478 87 0 0 chr13 19303855 19304154 -100440744 + AluSg SINE Alu 1 299 -11 3473 156 84 90 chr13 19304154 19304249 -100440649 + L1MDa LINE L1 1869 1963 -4577 1752 174 0 0 chr13 19304249 19304577 -100440321 + AluJb SINE Alu 1 328 0 287 238 158 26 chr13 19304737 19304851 -100440047 - MLT1K LTR MaLR -358 230 87 609 239 15 27 chr13 19304942 19305111 -100439787 + L1M4 LINE L1 3455 3623 -2523 2021 127 27 0 chr13 19305111 19305403 -100439495 + AluSx SINE Alu 1 300 -12 609 239 15 27 chr13 19305403 19305455 -100439443 + L1M4 LINE L1 3623 3674 -2472 429 207 35 26 chr13 19305462 19305578 -100439320 - L1ME LINE L1 -374 5792 5676 2313 93 0 3 chr13 19305587 19305889 -100439009 - AluSg SINE Alu -9 301 1 1078 83 0 0 chr13 19305889 19306022 -100438876 - AluSc SINE Alu -176 133 1 1449 202 84 41 chr13 19306022 19306538 -100438360 - L1ME LINE L1 -676 5490 4998 2181 104 0 17 chr13 19306538 19306857 -100438041 + AluSq SINE Alu 1 314 0 1449 202 84 41 chr13 19306857 19306888 -100438010 - L1ME LINE L1 -1168 4998 4970 2521 57 0 0 chr13 19306888 19307185 -100437713 + AluY SINE Alu 1 297 -14 1449 202 84 41 chr13 19307185 19307196 -100437702 - L1ME LINE L1 -1196 4970 4961 2607 51 0 13 chr13 19307196 19307510 -100437388 + AluY SINE Alu 2 311 0 963 114 0 0 chr13 19307928 19308059 -100436839 + AluSg/x SINE Alu 162 292 -18 1253 211 29 76 chr13 19308062 19308206 -100436692 - L1ME LINE L1 -1214 4932 4783 1793 145 9 52 chr13 19308206 19308530 -100436368 - AluJb SINE Alu -2 310 1 1253 211 29 76 chr13 19308530 19308765 -100436133 - L1ME LINE L1 -1363 4783 4571 1717 143 48 0 chr13 19308765 19309037 -100435861 + AluJb SINE Alu 1 285 -27 2816 240 79 9 chr13 19309056 19309270 -100435628 - L1ME LINE L1 -2047 4099 3901 243 0 0 0 chr13 19309270 19309297 -100435601 + (TG)n Simple_repeat Simple_repeat 1 27 0 2816 240 79 9 chr13 19309297 19309994 -100434904 - L1ME LINE L1 -2245 3901 3124 2215 93 3 42 chr13 19310043 19310408 -100434490 + AluSp SINE Alu 1 313 0 2329 85 3 0 chr13 19310436 19310766 -100434132 + AluSp SINE Alu 1 331 0 1507 183 4 11 chr13 19311324 19311586 -100433312 + AluJo SINE Alu 29 288 -24 215 302 115 98 chr13 19312142 19312437 -100432461 + L2 LINE L2 2894 3193 -79 2298 91 30 0 chr13 19316575 19316873 -100428025 + AluSg SINE Alu 1 307 -3 381 259 189 0 chr13 19317398 19317541 -100427357 + MER5B DNA MER1_type 6 175 -3 1463 145 13 4 chr13 19317585 19317813 -100427085 + AluSg/x SINE Alu 83 312 0 415 188 12 0 chr13 19317841 19317926 -100426972 - MER5A DNA MER1_type -84 105 20 353 258 98 8 chr13 19318451 19318583 -100426315 + MLT1I LTR MaLR 266 409 0 2330 133 80 15 chr13 19318806 19319206 -100425692 + MSTA LTR MaLR 1 426 -2 247 247 84 48 chr13 19320540 19320706 -100424192 - L1ME4a LINE L1 -11 6110 5939 450 312 201 26 chr13 19321007 19321395 -100423503 - L1ME4a LINE L1 -357 5813 5355 576 263 65 11 chr13 19321673 19321859 -100423039 + MIR SINE MIR 61 256 -6 1516 175 7 52 chr13 19322411 19322720 -100422178 - AluJo SINE Alu -17 295 1 25 0 0 0 chr13 19322895 19322920 -100421978 + AT_rich Low_complexity Low_complexity 1 25 0 872 241 82 53 chr13 19323332 19323672 -100421226 + MLT1G1 LTR MaLR 14 363 -232 301 242 45 0 chr13 19323710 19323776 -100421122 + MLT1G1 LTR MaLR 510 578 -12 2032 157 3 3 chr13 19325227 19325539 -100419359 - AluJb SINE Alu 0 312 1 204 116 93 0 chr13 19325661 19325704 -100419194 - L2 LINE L2 0 3313 3267 21 36 0 0 chr13 19325784 19325812 -100419086 + AT_rich Low_complexity Low_complexity 1 28 0 2401 86 3 0 chr13 19326603 19326905 -100417993 - AluY SINE Alu -8 303 1 536 278 52 32 chr13 19327798 19328050 -100416848 - MIR SINE MIR -1 261 5 319 250 35 59 chr13 19328632 19328772 -100416126 - MIR SINE MIR -55 153 14 446 250 196 0 chr13 19330017 19330165 -100414733 - MIR SINE MIR -61 201 25 412 209 146 0 chr13 19330229 19330339 -100414559 + MER103 DNA DNA 3 128 -38 345 285 7 35 chr13 19330690 19330834 -100414064 - MIR SINE MIR -56 206 67 697 226 6 24 chr13 19331121 19331289 -100413609 + L1MA9 LINE L1 3549 3713 -2433 7665 33 0 0 chr13 19331456 19332981 -100411917 - L1PA4 LINE L1 -3 6152 4629 3524 156 53 3 chr13 19332983 19333624 -100411274 + L1MA9 LINE L1 3697 4369 -1777 1244 167 27 0 chr13 19333619 19333841 -100411057 + L1MA9 LINE L1 5561 5788 -524 * 224 219 31 16 chr13 19333841 19333905 -100410993 + (TATATG)n Simple_repeat Simple_repeat 3 67 0 2997 134 27 17 chr13 19333930 19334453 -100410445 + L1MA9 LINE L1 5763 6290 -22 221 281 0 18 chr13 19335075 19335132 -100409766 + GA-rich Low_complexity Low_complexity 1 56 0 333 0 0 0 chr13 19335496 19335533 -100409365 + (TG)n Simple_repeat Simple_repeat 1 37 0 255 31 0 0 chr13 19335532 19335564 -100409334 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 649 221 126 26 chr13 19335863 19336053 -100408845 + MIR SINE MIR 36 244 -18 413 299 34 0 chr13 19337067 19337214 -100407684 + MIR SINE MIR 69 220 -42 210 229 0 0 chr13 19337839 19337887 -100407011 + L2 LINE L2 3223 3270 -2 188 93 186 0 chr13 19338409 19338452 -100406446 - MIR SINE MIR -96 166 116 2490 87 0 0 chr13 19338676 19338986 -100405912 - AluSg SINE Alu 0 310 1 22 35 0 0 chr13 19339115 19339144 -100405754 + AT_rich Low_complexity Low_complexity 1 29 0 1899 106 0 109 chr13 19339421 19339760 -100405138 + AluSc SINE Alu 3 304 -5 685 234 156 29 chr13 19339960 19340165 -100404733 - MIR SINE MIR -21 241 11 25 0 0 0 chr13 19341242 19341267 -100403631 + GC_rich Low_complexity Low_complexity 1 25 0 2191 184 68 0 chr13 19344992 19345377 -100399521 - LTR57 LTR ERVL 0 411 1 197 321 19 0 chr13 19345552 19345605 -100399293 - L2 LINE L2 -81 3191 3138 1278 219 4 0 chr13 19345895 19346141 -100398757 + AluJo SINE Alu 39 285 -27 2209 100 7 0 chr13 19346572 19346916 -100397982 + AluSq SINE Alu 1 346 0 211 326 0 35 chr13 19347254 19347340 -100397558 + L2 LINE L2 3190 3272 0 311 277 152 0 chr13 19347519 19347631 -100397267 + MIR SINE MIR 124 252 -10 464 280 74 16 chr13 19348057 19348246 -100396652 + L1ME LINE L1 5615 5814 -307 22 0 0 0 chr13 19348284 19348306 -100396592 + AT_rich Low_complexity Low_complexity 1 22 0 2486 81 0 0 chr13 19348306 19348616 -100396282 - AluY SINE Alu -1 310 1 585 226 39 13 chr13 19348745 19348762 -100396136 - L1MA10 LINE L1 0 6334 6318 2500 218 50 23 chr13 19348762 19348912 -100395986 - L1ME2 LINE L1 -9 6155 6010 297 0 0 0 chr13 19348912 19348945 -100395953 + (CA)n Simple_repeat Simple_repeat 2 34 0 2500 218 50 23 chr13 19348945 19349400 -100395498 - L1ME2 LINE L1 -154 6010 5534 277 250 125 11 chr13 19349498 19349586 -100395312 + MIR SINE MIR 149 246 -16 23 0 0 0 chr13 19349844 19349867 -100395031 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 19351033 19351055 -100393843 + AT_rich Low_complexity Low_complexity 1 22 0 2150 122 14 0 chr13 19351130 19351426 -100393472 - AluSx SINE Alu -12 300 1 349 259 12 0 chr13 19351573 19351658 -100393240 + MIR SINE MIR 56 141 -121 1034 133 24 30 chr13 19351776 19351975 -100392923 + AluSg/x SINE Alu 133 312 0 331 259 0 86 chr13 19352046 19352162 -100392736 + MIR SINE MIR 87 192 -70 666 158 62 159 chr13 19353304 19353416 -100391482 + L1M4 LINE L1 5089 5210 -1034 2248 86 14 0 chr13 19353416 19353757 -100391141 + AluSp SINE Alu 2 346 0 666 158 62 159 chr13 19353757 19353845 -100391053 + L1M4 LINE L1 5210 5305 -939 2310 103 0 0 chr13 19353845 19354163 -100390735 + AluSq SINE Alu 1 313 0 666 158 62 159 chr13 19354163 19354217 -100390681 + L1M4 LINE L1 5305 5363 -881 1952 155 7 0 chr13 19354217 19354514 -100390384 + AluSx SINE Alu 1 299 -13 666 158 62 159 chr13 19354514 19354525 -100390373 + L1M4 LINE L1 5363 5373 -871 2214 105 3 16 chr13 19354525 19354829 -100390069 + AluSx SINE Alu 11 310 -2 666 158 62 159 chr13 19354829 19354932 -100389966 + L1M4 LINE L1 5373 5428 -816 6168 128 27 44 chr13 19355027 19356072 -100388826 - L1PA15 LINE L1 0 6165 5118 1980 121 10 13 chr13 19356072 19356370 -100388528 - AluSq SINE Alu -16 297 1 6168 128 27 44 chr13 19356370 19356558 -100388340 - L1PA15 LINE L1 -1047 5118 4928 26 30 0 0 chr13 19357229 19357262 -100387636 + AT_rich Low_complexity Low_complexity 1 33 0 924 280 147 18 chr13 19357428 19357465 -100387433 - L1MC4a LINE L1 -605 5557 5526 189 94 0 0 chr13 19357465 19357497 -100387401 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 924 280 147 18 chr13 19357497 19358100 -100386798 - L1MC4a LINE L1 -636 5526 5186 317 222 161 61 chr13 19358105 19358285 -100386613 - HAL1 LINE L1 -1 2506 2309 392 167 0 13 chr13 19358310 19358388 -100386510 - HAL1 LINE L1 -302 2205 2129 1567 188 65 0 chr13 19358404 19358696 -100386202 - AluJo SINE Alu -1 311 1 21 36 0 0 chr13 19359094 19359122 -100385776 + AT_rich Low_complexity Low_complexity 1 28 0 11437 42 4 3 chr13 19359347 19361438 -100383460 - L1PA4 LINE L1 -5 6150 4055 318 67 0 0 chr13 19361847 19361892 -100383006 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1938 252 54 23 chr13 19361949 19362696 -100382202 - L1MC4 LINE L1 -139 7903 6884 * 3668 250 69 50 chr13 19362680 19363569 -100381329 - L1MC4 LINE L1 -1 8041 7113 1700 179 0 10 chr13 19363569 19363860 -100381038 - AluJb SINE Alu -24 288 1 3668 250 69 50 chr13 19363860 19364438 -100380460 - L1MC4 LINE L1 -929 7113 6547 1400 130 84 0 chr13 19364447 19364685 -100380213 - Tigger2 DNA MER2_type -10 2708 2451 843 204 91 0 chr13 19364739 19364925 -100379973 - Tigger2 DNA MER2_type -1961 757 555 6151 150 20 35 chr13 19364927 19366436 -100378462 + L1MA3 LINE L1 4126 5636 -669 3837 120 31 55 chr13 19366617 19367292 -100377606 + L1MA3 LINE L1 5641 6299 -6 1272 187 5 0 chr13 19367303 19367517 -100377381 - Tigger2 DNA MER2_type -2155 563 349 21 36 0 0 chr13 19367517 19367545 -100377353 + AT_rich Low_complexity Low_complexity 1 28 0 444 271 25 0 chr13 19368934 19369056 -100375842 + L1M4 LINE L1 4259 4383 -1763 1825 177 3 16 chr13 19369056 19369372 -100375526 + AluJb SINE Alu 1 312 0 1824 240 17 2 chr13 19369374 19369393 -100375505 - L1M4 LINE L1 -1278 4868 4851 1730 171 3 3 chr13 19369393 19369685 -100375213 + AluJo SINE Alu 1 292 -20 1824 240 17 2 chr13 19369685 19370132 -100374766 - L1M4 LINE L1 -1295 4851 4395 1021 168 25 20 chr13 19370135 19370332 -100374566 - AluJo SINE Alu -25 287 90 707 123 0 0 chr13 19370381 19370487 -100374411 + MLT2B3 LTR ERVL 1 106 -448 2256 56 70 0 chr13 19372149 19372436 -100372462 - LTR8 LTR ERV1 -384 307 1 1601 74 32 9 chr13 19372436 19372652 -100372246 - HUERS-P1 LTR ERV1 0 6263 6043 356 298 79 0 chr13 19373615 19373729 -100371169 - L2 LINE L2 -1 3312 3190 1647 185 4 0 chr13 19374817 19375093 -100369805 - L1PB4 LINE L1 -12 6144 5868 1961 168 7 3 chr13 19375543 19375852 -100369046 - AluSx SINE Alu -2 310 1 24 32 0 0 chr13 19376579 19376610 -100368288 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr13 19376653 19376687 -100368211 + AT_rich Low_complexity Low_complexity 1 34 0 298 301 48 0 chr13 19377039 19377142 -100367756 - Charlie8 DNA MER1_type -2275 142 35 1307 214 176 8 chr13 19378093 19378491 -100366407 - MLT1C LTR MaLR -2 465 1 1565 179 71 24 chr13 19378492 19378832 -100366066 - MLT1C-int LTR MaLR -1 1370 1015 295 234 64 53 chr13 19380153 19380247 -100364651 + L2 LINE L2 3177 3271 -1 24 32 0 0 chr13 19380883 19380914 -100363984 + AT_rich Low_complexity Low_complexity 1 31 0 394 344 78 9 chr13 19381214 19381432 -100363466 + MIR SINE MIR 20 252 -10 378 305 85 17 chr13 19381658 19381835 -100363063 - MIR SINE MIR 0 262 74 219 333 92 0 chr13 19381836 19381923 -100362975 - MIR SINE MIR 0 262 168 21 36 0 0 chr13 19381986 19382014 -100362884 + AT_rich Low_complexity Low_complexity 1 28 0 2484 63 0 7 chr13 19382014 19382313 -100362585 + AluSx SINE Alu 1 297 -15 810 136 8 15 chr13 19383119 19383251 -100361647 - FLAM_C SINE Alu -1 142 12 4183 85 60 21 chr13 19383463 19383914 -100360984 - L1MA2 LINE L1 0 6304 5821 2009 128 16 16 chr13 19383914 19384218 -100360680 - AluSc SINE Alu -5 304 1 4183 85 60 21 chr13 19384218 19384387 -100360511 - L1MA2 LINE L1 -483 5821 5660 504 198 90 9 chr13 19384521 19384632 -100360266 - L2 LINE L2 -3 3310 3191 182 378 16 0 chr13 19384730 19384857 -100360041 - MIR SINE MIR -114 148 20 978 200 88 19 chr13 19384984 19385244 -100359654 - L1ME1 LINE L1 -25 6141 5864 1561 150 46 107 chr13 19385607 19385973 -100358925 - MER2 DNA MER2_type 0 344 1 271 118 97 65 chr13 19387670 19387763 -100357135 + MIR SINE MIR 112 207 -55 462 195 163 8 chr13 19389502 19389625 -100355273 + MER5A DNA MER1_type 48 189 0 207 327 37 28 chr13 19389687 19389794 -100355104 - MIR SINE MIR -148 114 7 1857 169 14 0 chr13 19390936 19391231 -100353667 + AluJb SINE Alu 1 299 -13 554 279 32 36 chr13 19391236 19391487 -100353411 - MLT1J2 LTR MaLR -200 250 1 1927 329 77 39 chr13 19392803 19395367 -100349531 + HERVL LTR ERVL 1469 4189 -1465 22 0 0 0 chr13 19395373 19395395 -100349503 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr13 19395563 19395599 -100349299 + (TG)n Simple_repeat Simple_repeat 1 36 0 2049 160 24 79 chr13 19395697 19395848 -100349050 + MLT1C LTR MaLR 36 194 -273 2224 129 0 7 chr13 19395848 19396158 -100348740 + AluSg SINE Alu 1 308 -2 2049 160 24 79 chr13 19396158 19396463 -100348435 + MLT1C LTR MaLR 194 467 0 1835 185 26 11 chr13 19396491 19396870 -100348028 - L1MA9 LINE L1 0 6312 5928 5922 162 51 11 chr13 19396872 19398017 -100346881 - L1MA9 LINE L1 -461 5851 4605 2117 141 7 0 chr13 19398017 19398322 -100346576 - AluSx SINE Alu -5 307 1 5922 162 51 11 chr13 19398322 19398931 -100345967 - L1MA9 LINE L1 -1707 4605 4022 656 181 49 14 chr13 19399155 19399299 -100345599 + L1PA7 LINE L1 6006 6154 0 213 292 62 0 chr13 19399353 19399418 -100345480 + MIR SINE MIR 77 145 -117 3042 157 16 53 chr13 19399460 19400105 -100344793 + L1MB3 LINE L1 5284 5904 -279 1589 123 7 45 chr13 19402780 19403072 -100341826 + L1MB3 LINE L1 5894 6174 -9 532 299 51 42 chr13 19404033 19404250 -100340648 + MIR SINE MIR 16 234 -28 198 0 0 0 chr13 19404250 19404272 -100340626 + (GA)n Simple_repeat Simple_repeat 2 23 0 218 171 0 0 chr13 19404355 19404390 -100340508 + (CAT)n Simple_repeat Simple_repeat 2 36 0 392 292 28 14 chr13 19405167 19405311 -100339587 - MIR SINE MIR -8 254 109 267 261 43 22 chr13 19405944 19406036 -100338862 + L2 LINE L2 2266 2359 -955 352 321 169 50 chr13 19406430 19406885 -100338013 + L2 LINE L2 2236 2744 -570 1592 111 111 0 chr13 19406900 19407162 -100337736 + MLT2D LTR ERVL 76 366 -48 180 49 98 0 chr13 19407191 19407232 -100337666 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 1016 262 95 11 chr13 19407273 19407620 -100337278 - MLT1J LTR MaLR -135 376 1 377 319 28 14 chr13 19409563 19409707 -100335191 + MIR3 SINE MIR 33 178 -30 370 357 51 5 chr13 19410269 19410465 -100334433 - L2 LINE L2 -3 3310 3106 451 271 170 37 chr13 19411024 19411242 -100333656 - L2 LINE L2 -610 2704 2458 1012 263 89 13 chr13 19411535 19411851 -100333047 - LTR16A LTR ERVL 0 450 111 347 270 111 16 chr13 19412587 19412776 -100332122 - LTR16C LTR ERVL 0 491 285 230 157 196 0 chr13 19413291 19413342 -100331556 + MLT1J1 LTR MaLR 1 61 -385 309 250 132 62 chr13 19413461 19413605 -100331293 + MLT1J2 LTR MaLR 263 416 -34 292 266 237 7 chr13 19413652 19413789 -100331109 - MIR SINE MIR -63 145 14 1408 264 60 28 chr13 19414192 19414757 -100330141 + MLT1L LTR MaLR 33 615 0 262 346 45 6 chr13 19415069 19415225 -100329673 + L1ME LINE L1 5473 5634 -487 212 250 18 0 chr13 19416040 19416096 -100328802 + CT-rich Low_complexity Low_complexity 1 57 0 252 248 0 25 chr13 19416654 19416775 -100328123 + (TAA)n Simple_repeat Simple_repeat 1 118 0 255 200 11 111 chr13 19416858 19416948 -100327950 - MIR SINE MIR -100 162 82 266 306 105 0 chr13 19417228 19417352 -100327546 - MIR SINE MIR -54 208 72 239 209 30 15 chr13 19417434 19417501 -100327397 + CT-rich Low_complexity Low_complexity 3 70 0 1127 173 10 19 chr13 19417604 19417812 -100327086 - AluJo SINE Alu -106 206 1 472 279 53 16 chr13 19418597 19418659 -100326239 + MIR SINE MIR 16 74 -188 1795 141 50 7 chr13 19418659 19418958 -100325940 - AluSx SINE Alu 0 312 1 472 279 53 16 chr13 19418958 19419087 -100325811 + MIR SINE MIR 74 216 -46 508 314 34 64 chr13 19419124 19419328 -100325570 - MIR SINE MIR -3 259 62 327 48 0 0 chr13 19419433 19419475 -100325423 + 5S rRNA rRNA 1 42 -79 256 202 226 12 chr13 19419478 19419562 -100325336 - MIR SINE MIR -96 166 65 323 229 12 169 chr13 19419571 19419737 -100325161 - MIR SINE MIR -6 256 117 429 287 113 5 chr13 19420645 19420840 -100324058 + MIR SINE MIR 24 239 -23 205 274 74 42 chr13 19422714 19422809 -100322089 + MIR SINE MIR 113 210 -52 3930 123 76 8 chr13 19422910 19423249 -100321649 - L1MA8 LINE L1 -3 6288 5950 1348 257 127 9 chr13 19423249 19423783 -100321115 - L1PA6 LINE L1 -235 5919 5323 1064 154 9 23 chr13 19424068 19424288 -100320610 - MER47A DNA MER2_type -149 217 1 2263 100 0 3 chr13 19424515 19424805 -100320093 + AluSq SINE Alu 1 289 -24 3440 182 10 22 chr13 19426427 19426781 -100318117 - L1MB3 LINE L1 -10 6173 5829 2398 68 3 3 chr13 19426781 19427096 -100317802 - AluY SINE Alu 0 311 1 3440 182 10 22 chr13 19427096 19427412 -100317486 - L1MB3 LINE L1 -354 5829 5511 188 235 186 59 chr13 19427715 19427817 -100317081 + MIR SINE MIR 41 155 -107 2288 230 107 22 chr13 19428362 19428920 -100315978 - L1ME3A LINE L1 -76 6094 5454 2422 100 0 0 chr13 19428920 19429230 -100315668 - AluY SINE Alu -1 310 1 2288 230 107 22 chr13 19429230 19429428 -100315470 - L1ME3A LINE L1 -716 5454 5274 411 225 144 56 chr13 19430308 19430468 -100314430 - L2 LINE L2 -1 3312 3139 224 149 21 0 chr13 19431367 19431414 -100313484 + G-rich Low_complexity Low_complexity 1 48 0 2310 81 0 3 chr13 19431792 19432116 -100312782 + AluSg SINE Alu 1 323 0 1676 149 0 59 chr13 19432529 19432673 -100312225 + AluJo SINE Alu 1 121 -191 2026 102 0 39 chr13 19432673 19432956 -100311942 + AluSg SINE Alu 20 291 -19 1676 149 0 59 chr13 19432956 19433100 -100311798 + AluJo SINE Alu 121 272 -40 207 0 0 0 chr13 19433100 19433123 -100311775 + (TC)n Simple_repeat Simple_repeat 2 24 0 189 171 0 0 chr13 19433123 19433158 -100311740 + (CA)n Simple_repeat Simple_repeat 2 36 0 28 48 0 0 chr13 19433158 19433200 -100311698 + AT_rich Low_complexity Low_complexity 1 42 0 456 263 53 41 chr13 19433311 19433482 -100311416 - MER5B DNA MER1_type -2 176 4 4254 142 25 0 chr13 19433510 19434200 -100310698 + L1MC1 LINE L1 5622 6328 -5 13112 117 42 7 chr13 19438230 19438546 -100306352 + Tigger1 DNA MER2_type 1 305 -2113 204 40 0 0 chr13 19438546 19438571 -100306327 + (TC)n Simple_repeat Simple_repeat 2 26 0 13112 117 42 7 chr13 19438571 19440370 -100304528 + Tigger1 DNA MER2_type 305 2199 -219 1109 209 45 29 chr13 19440710 19441150 -100303748 - MER74A LTR ERVL -13 545 1 438 259 9 0 chr13 19441275 19441387 -100303511 - MLT2B1 LTR ERVL -407 113 1 887 254 44 20 chr13 19441948 19442196 -100302702 - L1MDa LINE L1 -5623 917 664 723 162 6 22 chr13 19442198 19442364 -100302534 + MSTC LTR MaLR 4 150 -215 274 274 63 11 chr13 19442483 19442578 -100302320 - HAL1b LINE L1 -56 1292 1193 347 263 50 0 chr13 19442607 19442687 -100302211 - L2 LINE L2 -4 3268 3185 1917 149 0 3 chr13 19442691 19442980 -100301918 + AluJb SINE Alu 1 288 -24 2079 119 36 3 chr13 19443056 19443358 -100301540 + AluSx SINE Alu 1 312 0 356 240 97 30 chr13 19443431 19443663 -100301235 + MER109 Unknown Unknown 2 1293 -1139 2492 61 0 26 chr13 19443739 19444050 -100300848 + AluY SINE Alu 1 303 -8 366 277 121 14 chr13 19444296 19444437 -100300461 + MER109 Unknown Unknown 650 805 -1627 1694 167 31 3 chr13 19444507 19444800 -100300098 + AluJo SINE Alu 1 301 -11 280 114 0 0 chr13 19444809 19444853 -100300045 + L1PA16 LINE L1 5940 5983 -183 642 153 18 9 chr13 19444854 19444965 -100299933 + L1PA16 LINE L1 6033 6144 -22 1024 111 0 21 chr13 19444972 19445116 -100299782 + AluJb SINE Alu 1 141 -171 23 0 0 0 chr13 19445149 19445172 -100299726 + AT_rich Low_complexity Low_complexity 1 23 0 1935 155 24 0 chr13 19445196 19445493 -100299405 + AluSq SINE Alu 1 304 -9 598 161 0 0 chr13 19445727 19445814 -100299084 - 5S rRNA rRNA -32 89 3 1220 146 66 134 chr13 19445860 19445966 -100298932 - MER2 DNA MER2_type -9 336 224 1938 89 16 104 chr13 19445966 19446282 -100298616 + AluSp SINE Alu 1 288 -25 1220 146 66 134 chr13 19446282 19446437 -100298461 - MER2 DNA MER2_type -121 224 102 1786 153 7 0 chr13 19446437 19446711 -100298187 - AluJb SINE Alu -33 279 4 1220 146 66 134 chr13 19446711 19446798 -100298100 - MER2 DNA MER2_type -243 102 11 294 145 81 48 chr13 19446754 19446816 -100298082 + MER2 DNA MER2_type 11 74 -271 * 551 260 98 86 chr13 19446900 19447484 -100297414 + MER109 Unknown Unknown 29 1789 -643 2371 90 0 3 chr13 19447706 19448005 -100296893 - AluSx SINE Alu -14 298 1 2010 115 3 34 chr13 19450155 19450450 -100294448 - AluSx SINE Alu -25 287 2 2026 141 0 0 chr13 19450768 19451066 -100293832 + AluSx SINE Alu 1 298 -14 228 240 147 0 chr13 19453755 19453830 -100291068 + MLT1E LTR MaLR 494 579 -14 1685 155 3 59 chr13 19453954 19454276 -100290622 - AluJb SINE Alu -8 304 1 239 220 40 0 chr13 19454942 19454992 -100289906 - AluJb SINE Alu -175 127 76 1812 176 20 20 chr13 19455192 19455498 -100289400 - AluJb SINE Alu -6 306 1 2344 79 7 3 chr13 19455726 19456031 -100288867 - AluY SINE Alu -5 306 1 2281 104 0 0 chr13 19456031 19456330 -100288568 - AluSg SINE Alu -11 299 1 2278 92 3 3 chr13 19456428 19456723 -100288175 + AluSc SINE Alu 1 295 -14 185 0 40 0 chr13 19456903 19456928 -100287970 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2415 63 0 0 chr13 19456935 19457221 -100287677 - AluY SINE Alu -24 287 2 574 286 84 0 chr13 19457964 19458142 -100286756 - MIR SINE MIR -6 256 64 2566 112 25 6 chr13 19459080 19459436 -100285462 + THE1B LTR MaLR 1 363 -1 497 252 0 41 chr13 19459642 19459765 -100285133 - L2 LINE L2 -4 3309 3192 374 323 132 44 chr13 19459890 19460074 -100284824 + L1MEc LINE L1 117 283 -6113 2199 99 0 53 chr13 19460074 19460397 -100284501 + AluSx SINE Alu 1 306 -6 374 323 132 44 chr13 19460397 19460735 -100284163 + L1MEc LINE L1 283 685 -5711 250 224 20 0 chr13 19460736 19460785 -100284113 + AluJ/monomer SINE Alu 1 50 -251 1277 268 71 72 chr13 19460795 19461063 -100283835 + L1MEc LINE L1 774 1041 -5355 2053 141 0 0 chr13 19461063 19461361 -100283537 + AluSx SINE Alu 1 298 -14 1277 268 71 72 chr13 19461361 19461950 -100282948 + L1MEc LINE L1 1041 1630 -4766 680 286 134 6 chr13 19462045 19462466 -100282432 + L1MEc LINE L1 1128 1618 -4766 2105 134 0 0 chr13 19462466 19462765 -100282133 - AluSx SINE Alu -13 299 1 680 286 134 6 chr13 19462765 19462842 -100282056 + L1MEc LINE L1 1618 1684 -4700 29 60 0 0 chr13 19463246 19463296 -100281602 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr13 19463654 19463679 -100281219 + AT_rich Low_complexity Low_complexity 1 25 0 267 277 69 30 chr13 19463872 19463973 -100280925 - L2 LINE L2 -18 3295 3191 482 370 98 34 chr13 19464114 19464901 -100279997 - L2 LINE L2 -1519 1795 959 561 253 55 93 chr13 19465247 19465504 -100279394 - MER112 DNA MER1_type -6 254 8 400 248 83 110 chr13 19465548 19465766 -100279132 - MER102b DNA MER1_type -13 328 117 804 267 95 18 chr13 19466197 19466523 -100278375 + Tigger8 DNA MER2_type 109 459 -207 1821 188 7 0 chr13 19466534 19466838 -100278060 + AluJo SINE Alu 1 306 -6 527 141 0 13 chr13 19466965 19467043 -100277855 - AluJb SINE Alu -17 295 219 968 121 0 0 chr13 19467051 19467183 -100277715 - AluJb SINE Alu -180 132 1 22 0 0 0 chr13 19467234 19467256 -100277642 + AT_rich Low_complexity Low_complexity 1 22 0 603 172 49 8 chr13 19467397 19467519 -100277379 - FLAM_A SINE Alu -6 136 10 819 182 8 8 chr13 19468013 19468145 -100276753 + FLAM_A SINE Alu 1 132 -1 216 97 0 0 chr13 19469090 19469121 -100275777 + (T)n Simple_repeat Simple_repeat 1 31 0 1946 100 12 0 chr13 19469137 19469388 -100275510 + AluSx SINE Alu 1 254 -58 1998 78 27 0 chr13 19469388 19469644 -100275254 + AluSx SINE Alu 49 312 0 611 101 11 11 chr13 19469678 19469767 -100275131 - AluJ/FLAM SINE Alu -222 90 2 791 264 204 10 chr13 19469847 19470493 -100274405 + L2 LINE L2 2522 3312 -1 235 353 15 0 chr13 19470663 19470731 -100274167 + MER91A DNA MER1_type 13 81 -115 24 32 0 0 chr13 19470877 19470908 -100273990 + AT_rich Low_complexity Low_complexity 1 31 0 220 285 97 62 chr13 19470932 19470979 -100273919 + MIR SINE MIR 11 55 -207 2423 89 0 0 chr13 19470979 19471282 -100273616 - AluY SINE Alu -8 303 1 220 285 97 62 chr13 19471282 19471378 -100273520 + MIR SINE MIR 55 159 -103 2437 64 3 26 chr13 19471400 19471712 -100273186 - AluSc SINE Alu 0 309 5 1622 194 37 13 chr13 19471713 19472206 -100272692 + MER74A LTR ERVL 7 558 0 2189 149 0 0 chr13 19472467 19472775 -100272123 + AluSx SINE Alu 1 308 -4 633 254 53 5 chr13 19472832 19473021 -100271877 - L1M4 LINE L1 -863 5283 5086 783 121 0 3 chr13 19473029 19473260 -100271638 + AluSq SINE Alu 1 300 -13 2064 138 3 0 chr13 19473296 19473601 -100271297 + AluJb SINE Alu 1 306 -6 279 277 76 8 chr13 19473604 19473723 -100271175 + L1MB8 LINE L1 5255 5381 -2427 230 254 97 53 chr13 19473903 19474017 -100270881 - MIR SINE MIR -48 214 96 400 211 39 109 chr13 19474026 19474099 -100270799 - L2 LINE L2 -4 3309 3247 2569 53 0 0 chr13 19474099 19474403 -100270495 + AluY SINE Alu 1 304 -7 400 211 39 109 chr13 19474403 19474457 -100270441 - L2 LINE L2 -66 3247 3191 2109 130 0 13 chr13 19474977 19475292 -100269606 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr13 19475292 19475315 -100269583 + AT_rich Low_complexity Low_complexity 1 23 0 306 245 187 32 chr13 19475319 19475474 -100269424 - HAL1 LINE L1 -4 2503 2325 849 236 81 28 chr13 19475577 19475880 -100269018 - L1MC4a LINE L1 -104 6017 5701 320 206 22 43 chr13 19475835 19475927 -100268971 + L1MB8 LINE L1 5902 5991 -187 * 29 47 0 0 chr13 19476098 19476141 -100268757 + AT_rich Low_complexity Low_complexity 1 43 0 1807 171 10 3 chr13 19476142 19476446 -100268452 + AluJo SINE Alu 1 306 -6 776 165 8 30 chr13 19477095 19477228 -100267670 + FLAM_C SINE Alu 1 130 -3 318 286 68 42 chr13 19478176 19478368 -100266530 - MIR3 SINE MIR -9 199 3 273 270 220 60 chr13 19478609 19478825 -100266073 - L2 LINE L2 -85 3228 2949 2374 94 0 0 chr13 19478825 19479133 -100265765 - AluSx SINE Alu -3 309 2 273 270 220 60 chr13 19479133 19479216 -100265682 - L2 LINE L2 -364 2949 2881 237 245 174 10 chr13 19479217 19479315 -100265583 + L1MC/D LINE L1 5694 5807 -2001 874 150 72 26 chr13 19479369 19479562 -100265336 + LTR54 LTR ERV1 309 510 0 2427 66 0 20 chr13 19479613 19479915 -100264983 + AluY SINE Alu 1 296 -15 24 0 0 0 chr13 19480275 19480299 -100264599 + AT_rich Low_complexity Low_complexity 1 24 0 16265 92 20 1 chr13 19481538 19482167 -100262731 - L1PA7 LINE L1 -5 6464 5848 2044 92 0 26 chr13 19482167 19482438 -100262460 - AluSg SINE Alu -44 266 3 16265 92 20 1 chr13 19482438 19484757 -100260141 - L1PA7 LINE L1 -621 5848 3448 12782 81 21 1 chr13 19484779 19486464 -100258434 - L1PA7 LINE L1 -4734 1727 8 417 301 75 40 chr13 19486540 19486739 -100258159 - MIR3 SINE MIR -1 207 2 327 238 62 0 chr13 19486935 19487015 -100257883 - L2 LINE L2 -5 3308 3224 2294 112 3 0 chr13 19487833 19488138 -100256760 + AluSx SINE Alu 1 306 -6 258 339 36 9 chr13 19488296 19488408 -100256490 + MIR SINE MIR 7 121 -141 22 35 0 0 chr13 19488599 19488628 -100256270 + AT_rich Low_complexity Low_complexity 1 29 0 2458 51 0 35 chr13 19489505 19489817 -100255081 - AluY SINE Alu -10 301 1 229 341 70 31 chr13 19490314 19490443 -100254455 - MIR SINE MIR -73 135 1 408 289 77 58 chr13 19490638 19490846 -100254052 - L3 LINE CR1 0 1577 1366 2311 92 3 13 chr13 19491067 19491373 -100253525 + AluSg SINE Alu 1 303 -7 264 385 49 72 chr13 19491586 19491934 -100252964 - L2 LINE L2 -15 3257 2918 348 252 134 39 chr13 19492159 19492286 -100252612 - L2 LINE L2 0 3313 3175 298 298 95 18 chr13 19492285 19492453 -100252445 + L2 LINE L2 3011 3191 -122 * 2267 115 3 0 chr13 19492573 19492885 -100252013 - AluSq SINE Alu 0 313 1 378 333 53 62 chr13 19493203 19493428 -100251470 - L2 LINE L2 0 3272 3050 482 255 53 55 chr13 19493534 19493812 -100251086 - MIR SINE MIR 0 262 25 1665 147 11 21 chr13 19493837 19494123 -100250775 - AluJb SINE Alu -29 283 1 1896 206 114 39 chr13 19494457 19495002 -100249896 + L1ME3A LINE L1 5583 6168 -2 454 271 119 96 chr13 19495083 19495150 -100249748 - MIR SINE MIR -1 261 197 2200 99 0 3 chr13 19495150 19495458 -100249440 + AluSp SINE Alu 1 307 0 454 271 119 96 chr13 19495458 19495640 -100249258 - MIR SINE MIR -65 197 5 431 244 9 26 chr13 19497166 19497281 -100247617 + MIR SINE MIR 148 260 -2 22 0 0 0 chr13 19497556 19497578 -100247320 + AT_rich Low_complexity Low_complexity 1 22 0 228 105 105 0 chr13 19497864 19497902 -100246996 + L2 LINE L2 2608 2649 -665 469 254 98 40 chr13 19498106 19498279 -100246619 - MIR SINE MIR -70 192 10 2137 129 10 3 chr13 19498540 19498843 -100246055 + AluSx SINE Alu 1 305 -7 26 50 0 0 chr13 19498843 19498883 -100246015 + AT_rich Low_complexity Low_complexity 1 40 0 191 316 18 0 chr13 19499230 19499287 -100245611 + MIR SINE MIR 203 260 -2 2374 74 0 7 chr13 19499574 19499871 -100245027 + AluY SINE Alu 1 295 -16 223 328 25 59 chr13 19501618 19501737 -100243161 + L2 LINE L2 2729 2843 -471 2367 96 0 6 chr13 19501740 19502054 -100242844 - AluSx SINE Alu 0 312 1 193 373 0 15 chr13 19502316 19502383 -100242515 + L2 LINE L2 3121 3186 -86 532 221 81 15 chr13 19502392 19502528 -100242370 - MIR SINE MIR -86 176 32 2244 115 0 3 chr13 19502698 19503002 -100241896 + AluSx SINE Alu 1 303 -9 185 161 0 0 chr13 19503023 19503054 -100241844 + L2 LINE L2 3028 3058 -255 2297 114 0 0 chr13 19503357 19503663 -100241235 - AluSg SINE Alu -2 308 3 2166 111 10 3 chr13 19503726 19504032 -100240866 + AluSg SINE Alu 3 310 0 251 257 57 133 chr13 19504302 19504512 -100240386 + MLT1L LTR MaLR 200 393 -222 3450 211 90 48 chr13 19504521 19506114 -100238784 - L1MDa LINE L1 -4642 1898 10 1579 222 99 60 chr13 19506116 19506262 -100238636 - L1ME LINE L1 -350 5816 5677 2184 113 17 14 chr13 19506262 19506616 -100238282 - THE1A LTR MaLR 0 355 1 1579 222 99 60 chr13 19506616 19507311 -100237587 - L1ME LINE L1 -489 5677 4988 1914 142 3 23 chr13 19507311 19507477 -100237421 - AluSx SINE Alu -12 300 141 2231 94 0 10 chr13 19507477 19507775 -100237123 - AluY SINE Alu -14 297 3 1914 142 3 23 chr13 19507775 19507910 -100236988 - AluSx SINE Alu -171 141 5 1579 222 99 60 chr13 19507910 19508266 -100236632 - L1ME LINE L1 -1178 4988 4647 677 189 0 0 chr13 19508275 19508386 -100236512 - FLAM_A SINE Alu -12 130 20 2337 75 0 0 chr13 19508481 19508761 -100236137 + AluY SINE Alu 1 280 -31 859 216 165 27 chr13 19508855 19509230 -100235668 - L1ME LINE L1 -1540 4606 4180 282 73 0 0 chr13 19509233 19509274 -100235624 + (TG)n Simple_repeat Simple_repeat 1 41 0 348 287 25 16 chr13 19509294 19509416 -100235482 - L1MC4a LINE L1 -1210 6598 6476 1228 291 68 13 chr13 19509884 19510388 -100234510 - L1MC4a LINE L1 -361 5803 5317 1640 204 71 22 chr13 19510505 19510955 -100233943 + L1MC4 LINE L1 6821 7292 -750 445 300 123 0 chr13 19510964 19511134 -100233764 - LTR16A LTR ERVL -5 445 255 1953 199 146 39 chr13 19511311 19511455 -100233443 + L1MC4 LINE L1 7299 7426 -616 13661 118 24 74 chr13 19511455 19512841 -100232057 + Tigger1 DNA MER2_type 2 1206 -1212 2431 71 0 0 chr13 19512841 19513135 -100231763 - AluY SINE Alu -16 295 2 13661 118 24 74 chr13 19513135 19514291 -100230607 + Tigger1 DNA MER2_type 1206 2418 0 1953 199 146 39 chr13 19514291 19514363 -100230535 + L1MC4 LINE L1 7426 7489 -553 1687 152 0 70 chr13 19514363 19514694 -100230204 + AluJo SINE Alu 1 310 0 1953 199 146 39 chr13 19514694 19514932 -100229966 + L1MC4 LINE L1 7489 7700 -342 2218 123 0 0 chr13 19514932 19515242 -100229656 + AluSx SINE Alu 3 312 0 1953 199 146 39 chr13 19515242 19515456 -100229442 + L1MC4 LINE L1 7700 8042 0 2173 110 3 7 chr13 19515476 19515775 -100229123 + AluSx SINE Alu 4 301 -11 180 0 0 0 chr13 19515775 19515795 -100229103 + (TG)n Simple_repeat Simple_repeat 2 21 0 420 294 79 68 chr13 19515963 19516052 -100228846 - L1MC4a LINE L1 -1313 4833 4746 524 133 36 0 chr13 19516052 19516135 -100228763 - L1MC1 LINE L1 -9 6324 6239 420 294 79 68 chr13 19516135 19516523 -100228375 - L1MC4a LINE L1 -1400 4746 4364 2297 68 3 56 chr13 19516523 19516847 -100228051 - AluY SINE Alu -4 307 1 420 294 79 68 chr13 19516847 19517339 -100227559 - L1MC4a LINE L1 -1782 4364 3852 2329 107 0 0 chr13 19517618 19517918 -100226980 + AluSx SINE Alu 1 300 -12 205 311 98 30 chr13 19518763 19518895 -100226003 + MIR SINE MIR 120 260 -2 1994 121 25 0 chr13 19519026 19519308 -100225590 + AluSx SINE Alu 1 289 -23 211 247 26 26 chr13 19519904 19519919 -100224979 + (TA)n Simple_repeat Simple_repeat 1 15 -62 1818 167 0 3 chr13 19519919 19520206 -100224692 + AluJo SINE Alu 1 286 -26 211 247 26 26 chr13 19520206 19520267 -100224631 + (TA)n Simple_repeat Simple_repeat 14 77 0 24 0 0 0 chr13 19520357 19520381 -100224517 + AT_rich Low_complexity Low_complexity 1 24 0 270 367 83 35 chr13 19520389 19520618 -100224280 + MIR SINE MIR 9 248 -14 1089 235 202 19 chr13 19520829 19521426 -100223472 - L2 LINE L2 0 3313 2620 244 175 35 0 chr13 19521440 19521497 -100223401 - L1ME4a LINE L1 -81 6040 5982 26 0 0 0 chr13 19521715 19521741 -100223157 + AT_rich Low_complexity Low_complexity 1 26 0 547 318 49 26 chr13 19522023 19522290 -100222608 - L2 LINE L2 -453 2861 2589 216 0 0 0 chr13 19522425 19522449 -100222449 + (TCTCCC)n Simple_repeat Simple_repeat 2 25 0 1115 143 20 5 chr13 19523062 19523258 -100221640 + L1MB2 LINE L1 5944 6142 -29 1955 114 15 0 chr13 19523258 19523530 -100221368 - AluY SINE Alu -35 276 1 309 169 84 28 chr13 19523530 19523601 -100221297 + LTR40a LTR ERVL 22 96 -423 1012 98 147 18 chr13 19523602 19523765 -100221133 + AluSg SINE Alu 17 200 -110 1502 229 43 24 chr13 19523782 19524158 -100220740 + LTR40a LTR ERVL 137 519 0 1867 127 53 13 chr13 19524239 19524539 -100220359 - AluSx SINE Alu 0 312 1 413 325 128 42 chr13 19524744 19525061 -100219837 - L1M4 LINE L1 -1067 5079 4733 2266 83 0 0 chr13 19525089 19525366 -100219532 - AluY SINE Alu -18 293 17 352 287 56 84 chr13 19525437 19525831 -100219067 + MLT1I LTR MaLR 19 401 -8 318 308 89 14 chr13 19525838 19526052 -100218846 - L1M4 LINE L1 -1559 4587 4358 333 263 19 58 chr13 19526091 19526247 -100218651 - HAL1b LINE L1 -12 1336 1187 359 340 30 11 chr13 19526269 19526534 -100218364 - L1M4 LINE L1 -1797 4349 4080 589 168 117 51 chr13 19528552 19528749 -100216149 - MER63A DNA MER1_type 0 210 1 239 234 0 39 chr13 19529060 19529137 -100215761 + A-rich Low_complexity Low_complexity 2 75 0 253 288 166 31 chr13 19529609 19529772 -100215126 + MIR SINE MIR 56 240 -22 1779 142 38 10 chr13 19529848 19530136 -100214762 - AluJb SINE Alu -16 296 1 201 330 96 52 chr13 19530373 19530718 -100214180 + L2 LINE L2 1351 1710 -1604 2167 98 7 3 chr13 19531427 19531722 -100213176 - AluSg SINE Alu -14 296 1 334 140 35 0 chr13 19531750 19531807 -100213091 - Alu SINE Alu 0 302 244 2378 86 3 0 chr13 19531943 19532245 -100212653 - AluY SINE Alu -8 303 1 249 351 36 40 chr13 19532453 19532675 -100212223 + L2 LINE L2 2844 3064 -208 272 250 60 0 chr13 19533053 19533137 -100211761 - MIR SINE MIR -74 188 100 712 200 145 0 chr13 19533158 19533303 -100211595 + MER58B DNA MER1_type 176 341 0 644 206 201 32 chr13 19533303 19533522 -100211376 + MLT1H LTR MaLR 274 529 -20 30 59 0 0 chr13 19533924 19533975 -100210923 + AT_rich Low_complexity Low_complexity 1 51 0 3338 186 123 29 chr13 19535303 19536267 -100208631 - L1MD1 LINE L1 -11 6231 5129 2136 67 0 7 chr13 19536267 19536536 -100208362 - AluY SINE Alu -10 301 35 3338 186 123 29 chr13 19536536 19536794 -100208104 - L1MD1 LINE L1 -1113 5129 4897 1351 228 27 54 chr13 19536810 19537218 -100207680 - L1MD1 LINE L1 -1755 4391 3995 2323 87 7 13 chr13 19537277 19537586 -100207312 + AluSx SINE Alu 1 307 -5 358 294 30 96 chr13 19537600 19537797 -100207101 + L1MC4a LINE L1 5868 6051 -1757 723 153 59 9 chr13 19537886 19538057 -100206841 - Tigger3(Golem) DNA MER2_type -34 2995 1 2251 68 7 31 chr13 19538359 19538653 -100206245 - AluY SINE Alu -16 295 9 2510 54 0 3 chr13 19538907 19539203 -100205695 - AluY SINE Alu -16 295 1 324 277 39 52 chr13 19539789 19539944 -100204954 - L1MC5 LINE L1 -35 7926 7774 1690 208 82 46 chr13 19540006 19540605 -100204293 - L1ME2 LINE L1 -137 6027 5373 2024 94 0 14 chr13 19541315 19541591 -100203307 + AluSx SINE Alu 1 272 -40 285 146 0 0 chr13 19541592 19541640 -100203258 + (CA)n Simple_repeat Simple_repeat 2 49 0 2079 97 66 3 chr13 19542887 19543175 -100201723 - AluSp SINE Alu -3 310 5 275 335 97 39 chr13 19543214 19543596 -100201302 + L2 LINE L2 1981 2384 -930 1986 198 148 22 chr13 19543669 19544258 -100200640 - L1ME2 LINE L1 -17 6145 5507 1857 185 26 0 chr13 19545532 19545602 -100199296 - L1MD3 LINE L1 -17 7978 7911 1572 138 116 8 chr13 19545602 19545870 -100199028 - AluJb SINE Alu -15 297 1 1857 185 26 0 chr13 19545870 19546150 -100198748 - L1MD3 LINE L1 -84 7911 7619 257 265 0 15 chr13 19546247 19546315 -100198583 - MIR3 SINE MIR -24 184 118 1957 156 195 55 chr13 19546685 19547141 -100197757 + MLT2B1 LTR ERVL 1 520 0 352 226 45 60 chr13 19547483 19547616 -100197282 + MLT1K LTR MaLR 141 271 -317 898 213 80 82 chr13 19548008 19548422 -100196476 - L1MC5 LINE L1 -36 7925 7513 4064 164 76 40 chr13 19548427 19549003 -100195895 - L1MB3 LINE L1 -2 6181 5549 2692 45 3 0 chr13 19549003 19549312 -100195586 - AluY SINE Alu -1 310 1 4064 164 76 40 chr13 19549312 19549735 -100195163 - L1MB3 LINE L1 -634 5549 5143 342 0 0 0 chr13 19549735 19549773 -100195125 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1583 164 0 64 chr13 19549777 19550075 -100194823 - AluJb SINE Alu -33 279 1 979 214 40 40 chr13 19550079 19550355 -100194543 - L1MC5 LINE L1 -436 7525 7250 335 191 0 0 chr13 19551650 19551713 -100193185 - U13 snRNA snRNA -28 76 14 369 332 44 93 chr13 19552426 19552836 -100192062 - L2 LINE L2 -1 3271 2882 469 323 112 50 chr13 19552946 19553448 -100191450 - L2 LINE L2 -746 2568 2036 219 204 102 0 chr13 19553530 19553579 -100191319 - MIR SINE MIR -82 180 127 180 0 0 0 chr13 19554479 19554499 -100190399 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 465 296 192 34 chr13 19556417 19556975 -100187923 - L2 LINE L2 -1226 2088 1443 2466 61 0 0 chr13 19557146 19557442 -100187456 - AluY SINE Alu -13 298 3 795 98 71 0 chr13 19557803 19557915 -100186983 + AluSg/x SINE Alu 177 296 -16 1701 187 10 13 chr13 19558018 19558328 -100186570 - AluJo SINE Alu -3 309 1 281 212 214 3 chr13 19559526 19559608 -100185290 - MIR SINE MIR -93 115 18 * 445 308 123 22 chr13 19559606 19559833 -100185065 - MIR SINE MIR -10 252 3 1597 163 41 37 chr13 19560160 19560454 -100184444 - AluJo SINE Alu -17 295 1 197 402 10 0 chr13 19560714 19560816 -100184082 + L2 LINE L2 772 874 -2440 2329 85 0 31 chr13 19561278 19561596 -100183302 - AluSq SINE Alu 0 313 6 1383 160 122 34 chr13 19562058 19562109 -100182789 - MER2 DNA MER2_type -25 320 275 1638 174 31 7 chr13 19562109 19562402 -100182496 + AluJo SINE Alu 1 300 -12 1383 160 122 34 chr13 19562402 19562644 -100182254 - MER2 DNA MER2_type -70 275 1 404 306 100 31 chr13 19562646 19562937 -100181961 + L2 LINE L2 1884 2194 -1120 1283 81 17 17 chr13 19563247 19563419 -100181479 - AluY SINE Alu -139 172 1 309 26 0 0 chr13 19565524 19565562 -100179336 + (TCTCCC)n Simple_repeat Simple_repeat 1 38 0 6221 63 39 48 chr13 19565562 19567477 -100177421 + SVA Other Other 57 1385 -1 968 243 148 29 chr13 19567492 19567871 -100177027 - MLT1H LTR MaLR -53 496 73 2093 106 46 0 chr13 19567889 19568171 -100176727 - AluSx SINE Alu -15 297 3 535 260 264 21 chr13 19568204 19568492 -100176406 - L2 LINE L2 -691 2623 2266 1921 149 17 14 chr13 19568999 19569295 -100175603 - AluJo SINE Alu -15 297 1 443 122 28 84 chr13 19569867 19569949 -100174949 + L1MB7 LINE L1 5824 5900 -284 2169 121 0 13 chr13 19569949 19570255 -100174643 + AluSq SINE Alu 1 302 -11 443 122 28 84 chr13 19570255 19570279 -100174619 + L1MB7 LINE L1 5900 5924 -260 337 82 41 0 chr13 19570311 19570360 -100174538 - U6 snRNA snRNA -50 57 7 899 250 49 0 chr13 19570361 19570625 -100174273 + L1MB7 LINE L1 5908 6184 0 * 2683 192 88 104 chr13 19570613 19571978 -100172920 + L1MEc LINE L1 1619 3005 -3210 621 189 18 9 chr13 19571978 19572089 -100172809 + AluSg/x SINE Alu 187 298 -11 1266 203 117 4 chr13 19572092 19572288 -100172610 - AluJo SINE Alu -6 296 61 2156 133 0 0 chr13 19572288 19572597 -100172301 + AluSx SINE Alu 4 312 0 1266 203 117 4 chr13 19572597 19572666 -100172232 - AluJo SINE Alu -241 61 1 2683 192 88 104 chr13 19572666 19572940 -100171958 + L1MEc LINE L1 3007 3296 -2919 2357 64 3 0 chr13 19573143 19573460 -100171438 - AluY SINE Alu 0 318 1 239 313 62 12 chr13 19573467 19573547 -100171351 + MIR3 SINE MIR 110 193 -15 360 0 0 0 chr13 19573875 19573915 -100170983 + (TG)n Simple_repeat Simple_repeat 2 41 0 527 257 0 0 chr13 19574149 19574254 -100170644 + MIR SINE MIR 6 110 -152 2227 96 0 14 chr13 19574365 19574658 -100170240 + AluSq SINE Alu 1 289 -24 22 0 0 0 chr13 19577252 19577274 -100167624 + GC_rich Low_complexity Low_complexity 1 22 0 266 280 17 0 chr13 19577572 19577690 -100167208 + C-rich Low_complexity Low_complexity 1 120 0 1523 148 13 45 chr13 19578439 19578749 -100166149 - AluJb SINE Alu -12 300 1 553 198 54 9 chr13 19579192 19579303 -100165595 - MLT1C LTR MaLR -3 464 349 1703 115 23 4 chr13 19579309 19579569 -100165329 + MSTB LTR MaLR 2 266 -160 1018 142 32 0 chr13 19579793 19579948 -100164950 + MSTB LTR MaLR 267 426 0 622 221 13 27 chr13 19579953 19580202 -100164696 - MLT1C LTR MaLR -122 345 68 1912 149 3 3 chr13 19580202 19580503 -100164395 - AluSx SINE Alu -11 301 1 1391 99 0 5 chr13 19580716 19580907 -100163991 - AluSc SINE Alu -1 308 119 571 355 5 5 chr13 19581204 19581407 -100163491 - L2 LINE L2 -559 2755 2553 1859 123 10 47 chr13 19581419 19581720 -100163178 + AluSg SINE Alu 1 290 -20 2379 97 0 0 chr13 19582423 19582733 -100162165 + AluSg SINE Alu 1 310 0 2069 107 42 3 chr13 19582975 19583264 -100161634 + AluSx SINE Alu 1 300 -12 298 230 239 0 chr13 19583293 19583406 -100161492 + MER34 LTR ERV1 1 140 -402 * 1040 222 198 16 chr13 19583374 19583743 -100161155 + MER39 LTR ERV1 272 707 0 3409 144 26 42 chr13 19584512 19585137 -100159761 + MER49 LTR ERV1 9 623 -300 253 146 24 0 chr13 19585138 19585179 -100159719 + 5S rRNA rRNA 1 42 -79 * 1184 254 17 17 chr13 19585178 19585477 -100159421 + MER49 LTR ERV1 611 909 -14 1143 105 23 6 chr13 19585487 19585659 -100159239 - L1MA3 LINE L1 -1 6304 6130 1199 111 17 22 chr13 19585659 19585828 -100159070 - AluSg/x SINE Alu -22 290 121 574 148 0 0 chr13 19585828 19585909 -100158989 - AluJ/FRAM SINE Alu -11 301 221 6158 199 41 32 chr13 19585909 19586306 -100158592 - L1 LINE L1 -1761 5804 5412 1870 174 0 7 chr13 19586306 19586610 -100158288 - AluJb SINE Alu -10 302 1 6158 199 41 32 chr13 19586610 19586822 -100158076 - L1 LINE L1 -2153 5412 5204 2095 114 14 0 chr13 19586822 19587112 -100157786 - AluSq SINE Alu -19 294 1 6158 199 41 32 chr13 19587112 19588012 -100156886 - L1 LINE L1 -2361 5204 4314 2255 91 11 0 chr13 19588012 19588297 -100156601 - AluSp SINE Alu -24 289 2 6158 199 41 32 chr13 19588297 19588521 -100156377 - L1 LINE L1 -3251 4314 4094 2123 134 3 3 chr13 19588521 19588827 -100156071 - AluJb SINE Alu -6 306 1 6158 199 41 32 chr13 19588827 19589394 -100155504 - L1 LINE L1 -3471 4094 3438 857 140 13 7 chr13 19589411 19589561 -100155337 + L1M1 LINE L1 3009 3159 -4406 1133 84 0 39 chr13 19589565 19589720 -100155178 - AluY SINE Alu -162 149 1 16271 122 32 5 chr13 19589720 19592101 -100152797 - L1 LINE L1 -4611 2954 510 1057 139 47 142 chr13 19592124 19592398 -100152500 - L1MD3 LINE L1 -346 7649 7402 445 136 18 146 chr13 19592404 19592472 -100152426 - MLT1F1 LTR MaLR -449 118 68 2103 131 3 0 chr13 19592472 19592769 -100152129 + AluSx SINE Alu 1 298 -14 445 136 18 146 chr13 19592769 19592810 -100152088 - MLT1F1 LTR MaLR -499 68 23 586 195 8 25 chr13 19592811 19592929 -100151969 - L1MD3 LINE L1 -707 7288 7173 2406 67 3 0 chr13 19593105 19593402 -100151496 - AluY SINE Alu -13 298 1 335 307 79 8 chr13 19593874 19594001 -100150897 + L2 LINE L2 3178 3313 0 617 267 45 11 chr13 19594238 19594414 -100150484 + MIR SINE MIR 5 186 -76 243 0 0 0 chr13 19594429 19594456 -100150442 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1766 121 25 32 chr13 19594460 19594740 -100150158 - AluSx SINE Alu -33 279 2 303 282 23 8 chr13 19594749 19594880 -100150018 + (TA)n Simple_repeat Simple_repeat 2 134 0 23 0 0 0 chr13 19594980 19595003 -100149895 + AT_rich Low_complexity Low_complexity 1 23 0 207 151 38 0 chr13 19595269 19595322 -100149576 + A-rich Low_complexity Low_complexity 3 57 0 698 211 121 16 chr13 19595329 19595585 -100149313 - LTR50 LTR ERVL -506 289 7 370 238 76 9 chr13 19595589 19595744 -100149154 - L1MC/D LINE L1 -344 5818 5668 207 280 20 0 chr13 19595919 19595969 -100148929 + L2 LINE L2 3208 3258 -14 2435 70 0 10 chr13 19596261 19596563 -100148335 + AluSg SINE Alu 1 299 -11 1617 141 72 10 chr13 19596574 19596864 -100148034 + AluJo SINE Alu 1 308 -4 2243 112 3 0 chr13 19596864 19597168 -100147730 + AluSx SINE Alu 1 305 -7 487 131 30 0 chr13 19597180 19597279 -100147619 + GA-rich Low_complexity Low_complexity 2 103 0 1865 136 27 30 chr13 19598292 19598593 -100146305 + AluSx SINE Alu 1 300 -12 2394 63 0 31 chr13 19598783 19599102 -100145796 + AluY SINE Alu 1 309 -2 285 322 58 0 chr13 19599890 19599977 -100144921 - L2 LINE L2 -8 3305 3214 809 128 0 0 chr13 19599977 19600086 -100144812 + FLAM_A SINE Alu 22 130 -12 377 269 0 62 chr13 19600086 19600231 -100144667 - L2 LINE L2 -94 3219 3084 203 307 31 47 chr13 19600586 19600713 -100144185 + MIR3 SINE MIR 15 139 -69 711 176 65 41 chr13 19600825 19600995 -100143903 - MLT1B LTR MaLR -213 177 4 756 211 109 28 chr13 19601402 19601687 -100143211 + L1ME4a LINE L1 5536 5843 -278 225 187 9 75 chr13 19601687 19601794 -100143104 + (TA)n Simple_repeat Simple_repeat 1 100 0 386 292 99 9 chr13 19602449 19602715 -100142183 - L2 LINE L2 -264 3049 2768 321 180 0 0 chr13 19602756 19602817 -100142081 - L1MCa LINE L1 -4195 2231 2171 1042 147 23 45 chr13 19602859 19603036 -100141862 - AluJo SINE Alu -32 280 108 333 140 18 0 chr13 19603037 19603094 -100141804 - L1MCa LINE L1 -4241 2185 2128 441 192 23 0 chr13 19603105 19603235 -100141663 + CT-rich Low_complexity Low_complexity 2 134 0 2217 117 7 7 chr13 19603239 19603547 -100141351 - AluSx SINE Alu -2 310 3 2281 105 3 13 chr13 19603559 19603872 -100141026 - AluSp SINE Alu -3 310 1 388 192 0 14 chr13 19603872 19603945 -100140953 - L1MCa LINE L1 -6093 333 262 * 714 180 109 52 chr13 19603944 19604068 -100140830 - L1M4 LINE L1 -3016 3366 3250 2187 95 14 14 chr13 19604068 19604362 -100140536 + AluSq SINE Alu 1 294 -19 714 180 109 52 chr13 19604362 19604504 -100140394 - L1M4 LINE L1 -3132 3250 3085 4792 222 121 44 chr13 19604512 19604851 -100140047 - L1M4 LINE L1 -4547 1837 1526 2368 83 3 0 chr13 19604851 19605152 -100139746 - AluY SINE Alu -9 302 1 4792 222 121 44 chr13 19605152 19606508 -100138390 - L1M4 LINE L1 -4858 1526 11 1950 125 36 0 chr13 19606512 19606793 -100138105 - AluSq SINE Alu -22 291 1 2136 126 0 16 chr13 19607071 19607381 -100137517 - AluSx SINE Alu -7 305 1 195 298 76 15 chr13 19607420 19607551 -100137347 - L2 LINE L2 -4 3309 3171 309 337 153 12 chr13 19607706 19607955 -100136943 - L2 LINE L2 -344 2970 2687 495 287 57 62 chr13 19608023 19608232 -100136666 - MIR SINE MIR -51 211 4 373 278 137 50 chr13 19608232 19608595 -100136303 - L2 LINE L2 -660 2654 2260 21 82 0 0 chr13 19609077 19609126 -100135772 + AT_rich Low_complexity Low_complexity 1 49 0 251 301 96 0 chr13 19609156 19609229 -100135669 + L2 LINE L2 3155 3234 -38 180 111 0 0 chr13 19609277 19609304 -100135594 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 259 316 61 10 chr13 19609307 19609405 -100135493 - L2 LINE L2 -1 3271 3169 209 300 7 79 chr13 19609467 19609482 -100135416 - L2 LINE L2 -274 2998 2983 2515 65 0 7 chr13 19609482 19609790 -100135108 + AluY SINE Alu 1 306 -5 209 300 7 79 chr13 19609790 19609914 -100134984 - L2 LINE L2 -289 2983 2869 1219 210 98 0 chr13 19610361 19610637 -100134261 - L1MC4 LINE L1 -919 7123 6821 836 173 0 14 chr13 19612940 19613079 -100131819 - FLAM_C SINE Alu -6 137 1 453 138 0 69 chr13 19613101 19613188 -100131710 - AluJ/FRAM SINE Alu -7 305 225 2194 96 7 0 chr13 19613802 19614083 -100130815 - AluSg SINE Alu -27 283 1 901 198 25 1 chr13 19614561 19614756 -100130142 + MLT1A2 LTR MaLR 190 390 0 284 250 148 56 chr13 19614798 19614906 -100129992 + MIR SINE MIR 6 123 -139 303 284 80 11 chr13 19614920 19615008 -100129890 - MIR SINE MIR -150 112 19 2263 86 0 22 chr13 19615026 19615340 -100129558 + AluY SINE Alu 4 310 -1 1804 149 41 7 chr13 19615342 19615637 -100129261 + AluSx SINE Alu 1 305 -7 1748 172 10 3 chr13 19615676 19615979 -100128919 + AluJo SINE Alu 1 305 -7 1688 168 24 20 chr13 19616006 19616303 -100128595 - AluJo SINE Alu -14 298 1 22 0 0 0 chr13 19616440 19616462 -100128436 + AT_rich Low_complexity Low_complexity 1 22 0 2426 94 7 0 chr13 19616618 19616926 -100127972 - AluSx SINE Alu -2 310 1 489 227 41 104 chr13 19617084 19617219 -100127679 - L1MC/D LINE L1 -2234 5551 5434 1971 119 4 0 chr13 19617219 19617497 -100127401 - AluSx SINE Alu -33 279 1 489 227 41 104 chr13 19617497 19617632 -100127266 - L1MC/D LINE L1 -2351 5434 5292 379 160 40 110 chr13 19617632 19617660 -100127238 + LTR40a LTR ERVL 4 32 -487 2291 98 0 3 chr13 19617660 19617957 -100126941 - AluY SINE Alu -15 296 1 379 160 40 110 chr13 19617957 19618028 -100126870 + LTR40a LTR ERVL 32 96 -423 1022 98 147 18 chr13 19618029 19618192 -100126706 + AluSg SINE Alu 17 200 -110 1392 245 43 24 chr13 19618209 19618585 -100126313 + LTR40a LTR ERVL 137 519 0 1811 133 54 14 chr13 19618666 19618960 -100125938 - AluSx SINE Alu -6 306 1 406 320 97 30 chr13 19619091 19619422 -100125476 - L1MC/D LINE L1 -977 5169 4817 2305 79 0 0 chr13 19619510 19619787 -100125111 - AluY SINE Alu -18 293 17 357 284 58 86 chr13 19619858 19620252 -100124646 + MLT1I LTR MaLR 19 401 -8 358 263 19 58 chr13 19620512 19620668 -100124230 - HAL1b LINE L1 -12 1336 1187 376 331 83 14 chr13 19620676 19620966 -100123932 - L1MC/D LINE L1 -1779 4367 4058 180 218 73 18 chr13 19621882 19621937 -100122961 - MIR SINE MIR -106 156 99 4969 168 43 12 chr13 19623489 19624471 -100120427 + L1 LINE L1 3995 5006 -1140 5973 125 55 55 chr13 19624598 19625174 -100119724 + L1MA5A LINE L1 4903 5477 -820 1791 176 7 0 chr13 19625174 19625463 -100119435 - AluJo SINE Alu -21 291 1 5973 125 55 55 chr13 19625463 19625911 -100118987 + L1MA5A LINE L1 5477 5943 -354 2097 87 35 7 chr13 19625911 19626197 -100118701 + AluSq SINE Alu 1 294 -19 5973 125 55 55 chr13 19626197 19626551 -100118347 + L1MA5A LINE L1 5943 6295 -2 1263 262 18 12 chr13 19627311 19627647 -100117251 - L1M4 LINE L1 -1800 4346 4009 471 209 209 12 chr13 19627656 19627828 -100117070 - MLT1G1 LTR MaLR -389 206 1 289 347 21 11 chr13 19627992 19628087 -100116811 + L2 LINE L2 3142 3237 -35 272 200 40 0 chr13 19628194 19628244 -100116654 - L2 LINE L2 -38 3234 3183 2236 123 0 0 chr13 19629187 19629487 -100115411 - AluSx SINE Alu -12 300 1 557 282 84 73 chr13 19629766 19630258 -100114640 + L1MC4a LINE L1 3852 4337 -1809 2289 71 3 56 chr13 19630258 19630582 -100114316 + AluY SINE Alu 1 307 -4 557 282 84 73 chr13 19630582 19630970 -100113928 + L1MC4a LINE L1 4337 4746 -1400 563 133 36 0 chr13 19630970 19631053 -100113845 + L1MC1 LINE L1 6239 6324 -9 557 282 84 73 chr13 19631053 19631142 -100113756 + L1MC4a LINE L1 4746 4833 -1313 180 0 0 0 chr13 19631310 19631330 -100113568 + (CA)n Simple_repeat Simple_repeat 2 21 0 2241 110 3 0 chr13 19631330 19631630 -100113268 - AluSq SINE Alu -11 302 2 393 241 97 14 chr13 19632206 19632351 -100112547 - L1MC4 LINE L1 -1065 6977 6821 1271 286 102 42 chr13 19632450 19632972 -100111926 + L1MC4a LINE L1 5301 5822 -342 353 287 25 16 chr13 19633440 19633562 -100111336 + L1MC4a LINE L1 6476 6598 -1210 282 73 0 0 chr13 19633582 19633623 -100111275 + (CA)n Simple_repeat Simple_repeat 1 41 0 945 216 165 27 chr13 19633626 19634001 -100110897 + L1M4 LINE L1 4180 4606 -1540 2351 75 0 0 chr13 19634095 19634375 -100110523 - AluY SINE Alu -31 280 1 725 189 0 0 chr13 19634470 19634581 -100110317 + FLAM_A SINE Alu 20 130 -12 1279 234 40 20 chr13 19634590 19634941 -100109957 + L1M4 LINE L1 4647 5004 -1142 959 124 0 0 chr13 19634946 19635075 -100109823 + AluSq/x SINE Alu 5 133 -180 2240 93 3 7 chr13 19635081 19635383 -100109515 + AluY SINE Alu 3 303 -8 344 140 35 0 chr13 19635519 19635576 -100109322 + Alu SINE Alu 242 300 0 2184 98 7 3 chr13 19635604 19635899 -100108999 + AluSg SINE Alu 1 296 -14 217 330 96 52 chr13 19636608 19636953 -100107945 - L2 LINE L2 -1604 1710 1351 1777 142 38 10 chr13 19637190 19637478 -100107420 + AluJb SINE Alu 1 296 -16 244 288 166 31 chr13 19637554 19637717 -100107181 - MIR SINE MIR -22 240 56 1869 182 118 58 chr13 19638287 19638804 -100106094 + LTR10A LTR ERV1 1 548 -61 2577 136 12 24 chr13 19638817 19639300 -100105598 + L1PBa LINE L1 2279 2706 -4156 1994 97 76 7 chr13 19639363 19639652 -100105246 + AluSc SINE Alu 1 309 0 19952 111 15 12 chr13 19639652 19643345 -100101553 + L1PBa LINE L1 2703 6406 -441 333 171 37 0 chr13 19643442 19643524 -100101374 + L1MB7 LINE L1 5824 5908 -276 1594 117 4 17 chr13 19643524 19643755 -100101143 + AluSx SINE Alu 1 228 -84 10276 30 9 4 chr13 19643855 19645419 -100099479 - L1P2 LINE L1 -501 5654 4086 * 16471 34 8 1 chr13 19645400 19647523 -100097375 + L1P2 LINE L1 1934 4072 -2074 2694 255 149 9 chr13 19647523 19648443 -100096455 + L2 LINE L2 1202 2250 -1064 1692 186 24 34 chr13 19649792 19650201 -100094697 - L1M4b LINE L1 -5311 1548 1144 2427 281 103 20 chr13 19650243 19651140 -100093758 - L1M4b LINE L1 -5869 990 20 629 281 113 31 chr13 19651159 19651435 -100093463 - L1ME3 LINE L1 -334 6108 5856 2215 129 0 0 chr13 19651435 19651744 -100093154 - AluSx SINE Alu -3 309 1 629 281 113 31 chr13 19651744 19652186 -100092712 - L1ME3 LINE L1 -586 5856 5337 653 280 55 10 chr13 19652211 19652518 -100092380 - L1ME3 LINE L1 -1198 5228 4908 198 0 0 0 chr13 19652521 19652543 -100092355 + (CA)n Simple_repeat Simple_repeat 2 23 0 1911 249 53 28 chr13 19652904 19653588 -100091310 - L1ME3 LINE L1 -3212 3214 2514 5247 41 2 2 chr13 19653609 19654247 -100090651 - L1PA3 LINE L1 0 6155 5518 2309 173 127 33 chr13 19654267 19655072 -100089826 - L1ME3 LINE L1 -3993 2433 1390 2509 68 0 0 chr13 19655072 19655367 -100089531 + AluY SINE Alu 1 295 -16 2309 173 127 33 chr13 19655367 19655708 -100089190 - L1ME3 LINE L1 -5036 1390 1083 880 157 57 0 chr13 19655712 19655871 -100089027 - FRAM SINE Alu -13 163 1 2177 108 7 0 chr13 19656096 19656226 -100088672 + AluSx SINE Alu 1 129 -183 2198 104 0 7 chr13 19656226 19656534 -100088364 + AluSg SINE Alu 1 306 -4 2177 108 7 0 chr13 19656534 19656699 -100088199 + AluSx SINE Alu 129 298 -14 24 0 0 0 chr13 19657610 19657634 -100087264 + AT_rich Low_complexity Low_complexity 1 24 0 998 263 173 28 chr13 19657912 19658341 -100086557 - L2 LINE L2 -2 3311 2821 327 282 29 33 chr13 19658567 19658748 -100086150 - MIR SINE MIR -14 248 3 22 0 0 0 chr13 19660506 19660528 -100084370 + AT_rich Low_complexity Low_complexity 1 22 0 417 367 69 12 chr13 19660537 19660782 -100084116 - MIR SINE MIR -1 261 3 288 104 21 21 chr13 19661549 19661597 -100083301 - MIR3 SINE MIR -12 196 149 205 156 0 0 chr13 19661839 19661871 -100083027 + CT-rich Low_complexity Low_complexity 1 32 0 340 186 0 0 chr13 19662180 19662239 -100082659 + AluJo SINE Alu 78 136 -166 2296 89 0 3 chr13 19662263 19662565 -100082333 + AluY SINE Alu 1 301 -10 237 338 0 25 chr13 19662574 19662654 -100082244 - L2 LINE L2 -236 3036 2959 1678 134 100 1 chr13 19663035 19663623 -100081275 - LTR34 LTR ERV1 0 699 1 2400 70 3 0 chr13 19664120 19664419 -100080479 - AluY SINE Alu -11 300 1 21 0 0 0 chr13 19664576 19664597 -100080301 + AT_rich Low_complexity Low_complexity 1 21 0 2062 133 0 22 chr13 19666287 19666603 -100078295 + AluJb SINE Alu 1 309 -3 234 307 130 102 chr13 19668173 19668219 -100076679 + L2 LINE L2 2972 3015 -257 1513 164 18 94 chr13 19668219 19668372 -100076526 + AluJo SINE Alu 1 104 -208 2290 93 10 7 chr13 19668372 19668673 -100076225 + AluSg SINE Alu 1 302 -8 1513 164 18 94 chr13 19668673 19668868 -100076030 + AluJo SINE Alu 104 312 0 234 307 130 102 chr13 19668868 19669114 -100075784 + L2 LINE L2 3015 3272 0 1628 183 7 39 chr13 19669151 19669457 -100075441 + AluJb SINE Alu 1 296 -16 2304 101 0 3 chr13 19670191 19670489 -100074409 - AluSq SINE Alu -16 297 1 22 0 0 0 chr13 19670623 19670645 -100074253 + AT_rich Low_complexity Low_complexity 1 22 0 1721 103 0 0 chr13 19672040 19672254 -100072644 - AluSx SINE Alu -87 225 12 1608 160 106 47 chr13 19673421 19673828 -100071070 + LTR10A LTR ERV1 118 548 -61 718 204 91 17 chr13 19673947 19674123 -100070775 + AluJo SINE Alu 123 311 -1 2373 78 0 0 chr13 19674954 19675250 -100069648 + AluY SINE Alu 1 296 -15 301 295 0 0 chr13 19677175 19677253 -100067645 + L2 LINE L2 1480 1557 -1757 1518 224 3 13 chr13 19677253 19677556 -100067342 - AluJb SINE Alu -11 301 2 439 201 187 0 chr13 19677990 19678129 -100066769 + L1MC4 LINE L1 6945 7109 -933 774 218 73 28 chr13 19678140 19678388 -100066510 + L1MC4 LINE L1 7276 7534 -508 219 358 49 0 chr13 19678560 19678641 -100066257 - L2 LINE L2 0 3272 3188 7250 123 12 6 chr13 19678868 19680332 -100064566 + Harlequin LTR ERV1 3209 6623 -26 1679 191 104 52 chr13 19680360 19680879 -100064019 + LTR10A LTR ERV1 1 546 -63 260 169 46 0 chr13 19680893 19680958 -100063940 + L1P LINE L1 1594 1661 -4485 2346 104 0 0 chr13 19681573 19681872 -100063026 + AluSx SINE Alu 2 300 -12 1818 135 96 16 chr13 19682017 19682329 -100062569 + MER1B DNA MER1_type 1 337 0 252 218 0 36 chr13 19682808 19682863 -100062035 + L2 LINE L2 2588 2640 -674 947 175 67 127 chr13 19682909 19683280 -100061618 - Charlie4a DNA MER1_type -159 349 1 429 318 168 51 chr13 19683417 19683732 -100061166 + L2 LINE L2 2920 3271 -1 25 0 0 0 chr13 19683860 19683885 -100061013 + AT_rich Low_complexity Low_complexity 1 25 0 2353 56 0 0 chr13 19683949 19684234 -100060664 - AluY SINE Alu -26 285 1 2059 101 14 17 chr13 19684962 19685258 -100059640 + AluSg SINE Alu 1 295 -15 2505 49 3 0 chr13 19685379 19685686 -100059212 + AluY SINE Alu 1 308 -3 1821 60 80 90 chr13 19686108 19686409 -100058489 - AluSq SINE Alu -14 299 2 309 253 178 41 chr13 19687075 19687221 -100057677 + L1M2 LINE L1 1068 1233 -5616 431 250 64 57 chr13 19688374 19688514 -100056384 + MIR SINE MIR 25 167 -41 394 282 114 13 chr13 19688522 19688671 -100056227 + MIR SINE MIR 93 256 -6 346 289 132 0 chr13 19689115 19689236 -100055662 + L2 LINE L2 3136 3272 0 181 302 19 0 chr13 19691120 19691173 -100053725 + MIR SINE MIR 100 153 -55 188 330 44 11 chr13 19691240 19691331 -100053567 - L2 LINE L2 -6 3307 3214 786 237 113 34 chr13 19691374 19691788 -100053110 - Charlie7 DNA MER1_type -40 2572 2126 377 186 156 106 chr13 19691805 19691979 -100052919 - L1MC5 LINE L1 -48 7913 7726 2020 150 0 0 chr13 19691979 19692001 -100052897 - AluSx SINE Alu -5 307 286 201 74 0 0 chr13 19692001 19692028 -100052870 + (TG)n Simple_repeat Simple_repeat 2 28 0 2020 150 0 0 chr13 19692028 19692312 -100052586 - AluSx SINE Alu -25 287 1 377 186 156 106 chr13 19692312 19692336 -100052562 - L1MC5 LINE L1 -235 7726 7705 364 265 95 86 chr13 19693920 19694118 -100050780 - L1M2 LINE L1 -5579 1270 1066 3334 107 236 7 chr13 19694118 19694678 -100050220 + LTR12 LTR ERV1 1 688 0 364 265 95 86 chr13 19694678 19694815 -100050083 - L1M2 LINE L1 -5783 1066 932 228 306 35 0 chr13 19694917 19695002 -100049896 - Charlie7 DNA MER1_type -1073 1539 1452 969 177 0 111 chr13 19695010 19695253 -100049645 - MER20 DNA MER1_type -3 216 1 459 290 0 8 chr13 19695255 19695379 -100049519 + L2 LINE L2 3191 3313 0 1313 230 178 58 chr13 19695482 19695857 -100049041 - Charlie7 DNA MER1_type -1789 823 494 2301 102 3 3 chr13 19695857 19696160 -100048738 + AluSq SINE Alu 1 303 -10 1313 230 178 58 chr13 19696160 19696394 -100048504 - Charlie7 DNA MER1_type -2118 494 290 2221 119 13 0 chr13 19696394 19696697 -100048201 - AluSq SINE Alu -6 307 1 1313 230 178 58 chr13 19696697 19696710 -100048188 - Charlie7 DNA MER1_type -2322 290 280 219 25 75 0 chr13 19696710 19696750 -100048148 + (TA)n Simple_repeat Simple_repeat 2 44 0 1313 230 178 58 chr13 19696750 19696856 -100048042 - Charlie7 DNA MER1_type -2332 280 5 600 216 54 54 chr13 19696910 19697132 -100047766 + MLT1J2 LTR MaLR 1 222 -228 358 105 0 79 chr13 19697230 19697306 -100047592 + MLT1J2 LTR MaLR 381 450 0 2161 119 0 7 chr13 19697804 19698114 -100046784 - AluSq SINE Alu -5 308 1 6721 74 5 1 chr13 19700181 19701258 -100043640 + L1PA8A LINE L1 5025 6104 -27 546 245 77 0 chr13 19701443 19701586 -100043312 + LTR41 LTR ERVL 1 154 -619 382 242 55 24 chr13 19702119 19702284 -100042614 + LTR41 LTR ERVL 599 768 -5 2215 121 0 0 chr13 19702694 19702991 -100041907 - AluSx SINE Alu -15 297 1 21 0 0 0 chr13 19703210 19703231 -100041667 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr13 19703353 19703385 -100041513 + AT_rich Low_complexity Low_complexity 1 32 0 388 220 88 0 chr13 19703482 19703573 -100041325 - L2 LINE L2 0 3313 3215 257 264 23 35 chr13 19703771 19703858 -100041040 - L2 LINE L2 -1 3271 3186 2404 52 0 14 chr13 19703913 19704244 -100040654 + AluY SINE Alu 1 327 0 421 336 29 14 chr13 19704660 19704800 -100040098 + L3 LINE CR1 1395 1536 -41 2233 88 0 17 chr13 19705000 19705294 -100039604 - AluSc SINE Alu -20 289 1 601 196 113 0 chr13 19705449 19705582 -100039316 + MSTB2 LTR MaLR 263 410 -47 2499 62 0 10 chr13 19705748 19706055 -100038843 - AluY SINE Alu -7 304 1 886 105 0 16 chr13 19706190 19706314 -100038584 - FLAM_C SINE Alu -11 132 11 23 33 0 0 chr13 19706339 19706369 -100038529 + AT_rich Low_complexity Low_complexity 1 30 0 386 254 135 24 chr13 19707191 19707317 -100037581 - L1M4b LINE L1 -6700 159 20 863 281 150 23 chr13 19707336 19707612 -100037286 - L1ME3 LINE L1 -334 6246 6006 2277 117 0 0 chr13 19707612 19707920 -100036978 - AluSx SINE Alu -4 308 1 863 281 150 23 chr13 19707920 19708716 -100036182 - L1ME3 LINE L1 -574 6006 5046 198 0 0 0 chr13 19708719 19708741 -100036157 + (CA)n Simple_repeat Simple_repeat 2 23 0 2222 242 54 29 chr13 19709090 19709788 -100035110 - L1ME3 LINE L1 -3197 3367 2652 4057 40 8 8 chr13 19709807 19710285 -100034613 - L1PA4 LINE L1 -1 6154 5677 4953 56 27 21 chr13 19710636 19711266 -100033632 - L1PA5 LINE L1 -3 6151 5518 2679 174 139 36 chr13 19711286 19712092 -100032806 - L1ME3 LINE L1 -3993 2571 1566 2530 68 0 0 chr13 19712092 19712388 -100032510 + AluY SINE Alu 1 296 -15 2679 174 139 36 chr13 19712388 19712475 -100032423 - L1ME3 LINE L1 -4998 1566 1489 1191 221 108 18 chr13 19712702 19713037 -100031861 - L1ME3 LINE L1 -4983 1581 1217 1054 151 44 0 chr13 19713037 19713196 -100031702 - FRAM SINE Alu -16 160 1 3285 215 94 46 chr13 19713226 19714288 -100030610 - L1ME3 LINE L1 -4851 1194 82 989 108 0 0 chr13 19714469 19714599 -100030299 + AluSq/x SINE Alu 1 130 -183 2197 63 39 7 chr13 19714599 19714884 -100030014 + AluSq SINE Alu 1 294 -19 2301 131 8 6 chr13 19714886 19715238 -100029660 + L1MA5A LINE L1 5943 6295 -2 234 91 0 0 chr13 19716341 19716374 -100028524 + (A)n Simple_repeat Simple_repeat 1 33 0 230 285 258 43 chr13 19716624 19716880 -100028018 + L3b LINE CR1 1257 1567 -16 23 33 0 0 chr13 19717026 19717056 -100027842 + AT_rich Low_complexity Low_complexity 1 30 0 362 254 76 42 chr13 19717365 19717483 -100027415 - MER5A DNA MER1_type -51 138 17 1200 186 5 9 chr13 19718093 19718303 -100026595 - MER3 DNA MER1_type 0 209 1 1524 134 169 12 chr13 19718571 19718825 -100026073 + AluJb SINE Alu 1 294 -8 257 170 0 38 chr13 19719222 19719275 -100025623 - L2 LINE L2 0 3313 3263 940 208 73 38 chr13 19719523 19719840 -100025058 - MLT1C LTR MaLR 0 467 140 1330 149 38 4 chr13 19719840 19720126 -100024772 + L1PA16 LINE L1 5858 6162 -1 625 180 25 87 chr13 19720152 19720313 -100024585 - MLT1C LTR MaLR -316 151 1 319 259 99 71 chr13 19721086 19721298 -100023600 - L2 LINE L2 -2 3311 3094 221 290 167 41 chr13 19721605 19721850 -100023048 - L2 LINE L2 -674 2640 2365 2016 124 0 7 chr13 19721918 19722208 -100022690 - AluSx SINE Alu -24 288 1 2346 70 0 3 chr13 19722395 19722722 -100022176 + AluY SINE Alu 1 326 0 435 329 29 14 chr13 19723138 19723278 -100021620 + L3 LINE CR1 1395 1536 -41 2218 92 0 17 chr13 19723478 19723772 -100021126 - AluSc SINE Alu -20 289 1 601 196 113 0 chr13 19723927 19724060 -100020838 + MSTB2 LTR MaLR 263 410 -47 2499 62 0 10 chr13 19724226 19724533 -100020365 - AluY SINE Alu -7 304 1 886 105 0 16 chr13 19724668 19724792 -100020106 - FLAM_C SINE Alu -11 132 11 23 33 0 0 chr13 19724817 19724847 -100020051 + AT_rich Low_complexity Low_complexity 1 30 0 2281 107 0 7 chr13 19725678 19725988 -100018910 - AluSx SINE Alu 0 312 5 2531 63 0 0 chr13 19726418 19726721 -100018177 - AluY SINE Alu -8 303 1 2384 45 21 7 chr13 19726925 19727214 -100017684 - AluY SINE Alu -18 293 1 228 285 168 0 chr13 19727707 19727844 -100017054 - HAL1 LINE L1 -2319 188 29 1016 197 16 0 chr13 19728574 19728757 -100016141 + MER5A DNA MER1_type 3 188 -1 434 266 129 60 chr13 19728786 19729451 -100015447 - L1MEd LINE L1 -2964 3165 2455 333 345 114 8 chr13 19729461 19729707 -100015191 - L1MEd LINE L1 -3969 2341 2070 1707 184 74 18 chr13 19729843 19730169 -100014729 + MER2 DNA MER2_type 1 344 0 786 255 82 85 chr13 19730396 19731446 -100013452 - L1MEd LINE L1 -4480 1649 609 288 339 114 40 chr13 19731657 19732035 -100012863 - MLT1J2 LTR MaLR -44 406 1 263 253 27 13 chr13 19732070 19732145 -100012753 - L1MEd LINE L1 -6031 88 13 192 250 0 0 chr13 19732152 19732192 -100012706 - MER5B DNA MER1_type -135 43 4 2353 70 3 35 chr13 19732417 19732730 -100012168 + AluY SINE Alu 1 303 -8 32 43 0 0 chr13 19733383 19733429 -100011469 + AT_rich Low_complexity Low_complexity 1 46 0 2412 84 0 0 chr13 19733553 19733849 -100011049 - AluSq SINE Alu -17 296 1 2044 93 0 15 chr13 19734344 19734612 -100010286 - AluSx SINE Alu -43 269 6 295 273 201 26 chr13 19734769 19734923 -100009975 - MIR3 SINE MIR -7 201 21 287 307 30 20 chr13 19735846 19735947 -100008951 - MIR SINE MIR -119 143 42 439 233 92 0 chr13 19736000 19736120 -100008778 + LTR33A LTR ERVL 61 191 -332 313 196 345 0 chr13 19736178 19736326 -100008572 + LTR33A LTR ERVL 318 516 -7 275 308 68 30 chr13 19736624 19736757 -100008141 - MER5B DNA MER1_type -40 138 1 778 199 58 0 chr13 19736765 19736936 -100007962 + MER5A DNA MER1_type 1 181 -8 281 321 60 22 chr13 19737157 19737291 -100007607 - L2 LINE L2 0 3313 3175 295 268 70 108 chr13 19740044 19740201 -100004697 + MER96 DNA MER1_type? 25 175 0 225 0 0 0 chr13 19740366 19740391 -100004507 + (TG)n Simple_repeat Simple_repeat 2 26 0 2089 147 0 6 chr13 19740402 19740716 -100004182 - AluSx SINE Alu 0 312 1 209 325 13 0 chr13 19742892 19742969 -100001929 - L2 LINE L2 -11 3302 3225 291 325 124 20 chr13 19743012 19743261 -100001637 + L3b LINE CR1 1123 1397 -186 1871 214 116 9 chr13 19743363 19743822 -100001076 - MLT2B2 LTR ERVL -7 508 1 2250 115 0 3 chr13 19743827 19744123 -100000775 - AluSx SINE Alu -17 295 1 268 330 41 0 chr13 19744694 19744791 -100000107 + L2 LINE L2 3159 3259 -13 289 326 46 17 chr13 19745000 19745175 -99999723 + L1MC/D LINE L1 5694 5873 -1935 203 254 34 0 chr13 19745395 19745454 -99999444 + (TA)n Simple_repeat Simple_repeat 2 62 0 203 239 0 34 chr13 19745508 19745596 -99999302 + (TAAA)n Simple_repeat Simple_repeat 2 86 0 285 275 225 14 chr13 19745991 19746133 -99998765 + MER5B DNA MER1_type 6 177 -1 224 293 11 98 chr13 19746220 19746394 -99998504 + MER5A DNA MER1_type 1 159 -30 2522 63 48 40 chr13 19746798 19747177 -99997721 - L1PA5 LINE L1 -3 6151 5770 187 405 32 16 chr13 19748089 19748215 -99996683 + L3 LINE CR1 3 130 -1447 557 154 8 85 chr13 19748378 19748508 -99996390 + MLT2B1 LTR ERVL 399 518 -2 2550 61 0 0 chr13 19748801 19749098 -99995800 + AluY SINE Alu 1 297 -14 833 96 0 4 chr13 19749361 19749572 -99995326 - AluY SINE Alu -8 303 2 279 59 0 0 chr13 19749687 19749721 -99995177 - MLT2C2 LTR ERVL -335 129 96 762 211 96 46 chr13 19749745 19749963 -99994935 + MLT2C1 LTR ERVL 121 349 -48 189 213 0 0 chr13 19749985 19750032 -99994866 + C-rich Low_complexity Low_complexity 1 47 0 357 117 0 0 chr13 19750314 19750374 -99994524 + (TA)n Simple_repeat Simple_repeat 1 60 0 204 232 21 11 chr13 19750467 19750562 -99994336 + (TA)n Simple_repeat Simple_repeat 2 97 0 248 296 88 25 chr13 19750603 19750762 -99994136 - L1ME4a LINE L1 -71 6050 5882 2028 97 0 0 chr13 19750871 19751138 -99993760 + AluSq SINE Alu 44 310 -3 312 320 16 0 chr13 19751147 19751272 -99993626 - MIR SINE MIR -15 247 121 2576 55 0 3 chr13 19751381 19751689 -99993209 - AluY SINE Alu -4 307 1 2452 45 3 7 chr13 19753166 19753458 -99991440 + AluY SINE Alu 1 291 -20 1152 276 100 51 chr13 19754493 19755550 -99989348 + L1MCc LINE L1 1168 2484 -4638 2510 127 11 3 chr13 19755932 19756293 -99988605 - THE1B LTR MaLR 0 364 1 372 349 60 5 chr13 19756812 19757027 -99987871 + L2 LINE L2 2745 2971 -343 521 172 0 11 chr13 19757037 19757130 -99987768 - Tigger7 DNA MER2_type -6 2581 2490 * 1538 183 4 8 chr13 19757127 19757390 -99987508 - Tigger7 DNA MER2_type -2224 263 2 418 271 205 5 chr13 19757408 19757618 -99987280 + L2 LINE L2 2989 3240 -73 336 330 154 0 chr13 19757675 19758001 -99986897 - L2 LINE L2 -150 3163 2794 838 294 144 17 chr13 19758072 19758718 -99986180 - L2 LINE L2 -671 2643 1916 478 288 94 21 chr13 19758953 19759186 -99985712 + MIR SINE MIR 13 262 0 1487 289 29 25 chr13 19759938 19760551 -99984347 - L1MC4a LINE L1 -1883 5925 5310 761 118 17 0 chr13 19760522 19760641 -99984257 - L1MCa LINE L1 -4801 1625 1505 * 1383 174 190 45 chr13 19760641 19761015 -99983883 - MSTB2 LTR MaLR -7 450 23 5841 240 133 13 chr13 19761028 19762576 -99982322 - MSTD-int LTR MaLR 0 1735 2 1295 234 46 38 chr13 19762578 19762971 -99981927 - MSTD LTR MaLR 0 396 1 4615 201 34 100 chr13 19763006 19764572 -99980326 - L1MCa LINE L1 -4938 1488 26 180 125 0 0 chr13 19764647 19764679 -99980219 + (CA)n Simple_repeat Simple_repeat 1 32 0 1771 143 4 8 chr13 19764689 19764948 -99979950 - AluJo SINE Alu -49 263 6 2161 79 61 0 chr13 19764955 19765233 -99979665 - AluY SINE Alu -16 295 1 399 309 82 30 chr13 19765368 19765990 -99978908 - L1MC4a LINE L1 -1006 5420 4767 2225 100 3 7 chr13 19766028 19766346 -99978552 + AluSx SINE Alu 1 312 0 937 121 0 0 chr13 19766369 19766501 -99978397 + FLAM_C SINE Alu 1 132 -1 206 111 56 0 chr13 19766568 19766604 -99978294 + CT-rich Low_complexity Low_complexity 3 40 0 617 268 42 0 chr13 19766828 19767018 -99977880 + MIR SINE MIR 60 257 -5 378 0 0 0 chr13 19769312 19769354 -99975544 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr13 19769355 19769384 -99975514 + GC_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr13 19769446 19769484 -99975414 + GC_rich Low_complexity Low_complexity 1 38 0 231 36 0 0 chr13 19769987 19770015 -99974883 + (TG)n Simple_repeat Simple_repeat 1 28 0 189 132 0 0 chr13 19771742 19771780 -99973118 + (TC)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr13 19773296 19773319 -99971579 + GC_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr13 19773953 19774005 -99970893 + GC_rich Low_complexity Low_complexity 1 52 0 206 220 17 0 chr13 19776736 19776795 -99968103 + CT-rich Low_complexity Low_complexity 1 60 0 309 317 7 113 chr13 19777322 19777606 -99967292 + L2 LINE L2 3014 3267 -5 365 237 31 0 chr13 19777823 19777920 -99966978 + MIR SINE MIR 93 192 -70 2322 69 0 60 chr13 19779102 19779421 -99965477 + AluY SINE Alu 4 303 -8 345 137 0 0 chr13 19779917 19779968 -99964930 - MLT1A2 LTR MaLR -56 318 268 203 171 158 53 chr13 19781158 19781234 -99963664 - L2 LINE L2 -12 3301 3218 256 257 9 106 chr13 19781250 19781363 -99963535 + L2 LINE L2 3171 3272 0 1649 148 18 25 chr13 19781443 19781720 -99963178 - AluJo SINE Alu -2 310 36 210 171 0 0 chr13 19781912 19781947 -99962951 + (TA)n Simple_repeat Simple_repeat 2 36 0 323 158 53 53 chr13 19782269 19782345 -99962553 - Charlie7 DNA MER1_type 0 2612 2537 23 0 0 0 chr13 19782380 19782403 -99962495 + AT_rich Low_complexity Low_complexity 1 23 0 182 255 59 0 chr13 19783237 19783288 -99961610 - L3b LINE CR1 -50 1533 1480 186 314 14 0 chr13 19784123 19784193 -99960705 + MIR3 SINE MIR 116 186 -22 1669 135 108 0 chr13 19785511 19785771 -99959127 - AluSx SINE Alu -24 288 1 252 262 58 29 chr13 19786320 19786423 -99958475 - MIR SINE MIR -80 128 23 182 333 71 0 chr13 19787931 19788030 -99956868 - MIR SINE MIR -112 150 45 300 294 64 18 chr13 19788755 19788864 -99956034 + L2 LINE L2 3159 3272 0 260 356 7 0 chr13 19789610 19789759 -99955139 + (CA)n Simple_repeat Simple_repeat 1 150 0 * 339 301 28 17 chr13 19789733 19789909 -99954989 + (CTCA)n Simple_repeat Simple_repeat 3 180 0 2689 215 107 5 chr13 19790012 19790603 -99954295 - MER82 DNA MER2_type -2 651 1 182 211 35 0 chr13 19791682 19791739 -99953159 + CT-rich Low_complexity Low_complexity 2 60 0 224 316 118 21 chr13 19791908 19792095 -99952803 + MIR SINE MIR 23 227 -35 403 268 28 16 chr13 19793498 19793623 -99951275 - MIR3 SINE MIR -8 200 71 444 37 0 0 chr13 19794505 19794559 -99950339 + (TG)n Simple_repeat Simple_repeat 1 54 0 1735 164 40 3 chr13 19796590 19796889 -99948009 - AluJb SINE Alu -2 310 1 2575 30 0 7 chr13 19797251 19797550 -99947348 - AluY SINE Alu -14 297 1 215 351 26 18 chr13 19797694 19797808 -99947090 + MIR3 SINE MIR 88 202 -6 287 333 48 24 chr13 19797867 19798035 -99946863 - MIR SINE MIR -70 192 21 306 0 0 0 chr13 19799458 19799492 -99945406 + (TG)n Simple_repeat Simple_repeat 2 35 0 442 261 72 67 chr13 19799784 19799964 -99944934 + MER5A DNA MER1_type 8 188 -1 1302 64 0 0 chr13 19800461 19800617 -99944281 - L1PA10 LINE L1 -4 6164 6009 390 42 0 0 chr13 19801143 19801191 -99943707 + (TG)n Simple_repeat Simple_repeat 2 49 0 202 0 59 29 chr13 19801428 19801462 -99943436 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 35 41 0 0 chr13 19801497 19801546 -99943352 + AT_rich Low_complexity Low_complexity 1 49 0 35 0 0 0 chr13 19804950 19804985 -99939913 + AT_rich Low_complexity Low_complexity 1 35 0 2373 80 0 13 chr13 19804986 19805288 -99939610 + AluY SINE Alu 1 298 -13 207 0 0 0 chr13 19806460 19806483 -99938415 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1662 195 0 3 chr13 19806483 19806765 -99938133 - AluSx SINE Alu -27 285 5 276 236 90 11 chr13 19806904 19806993 -99937905 - L2 LINE L2 -1 3312 3217 207 0 0 0 chr13 19808640 19808663 -99936235 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4038 244 74 68 chr13 19809450 19809897 -99935001 + L1ME1 LINE L1 422 865 -5531 2691 118 66 20 chr13 19809897 19810304 -99934594 - MSTB LTR MaLR 0 426 1 4038 244 74 68 chr13 19810304 19810965 -99933933 + L1ME1 LINE L1 865 1520 -4876 1772 68 0 5 chr13 19810965 19811186 -99933712 - AluY SINE Alu -6 305 86 4038 244 74 68 chr13 19811186 19811355 -99933543 + L1ME1 LINE L1 1520 1686 -4710 2429 75 0 0 chr13 19811355 19811647 -99933251 + AluY SINE Alu 1 292 -19 4038 244 74 68 chr13 19811647 19812033 -99932865 + L1ME1 LINE L1 1686 2098 -4298 2466 230 31 8 chr13 19812036 19812672 -99932226 + L1ME1 LINE L1 2179 2829 -3386 1919 50 0 0 chr13 19812658 19812897 -99932001 - L1P LINE L1 -848 5298 5060 * 2758 75 0 0 chr13 19812897 19813230 -99931668 + L1PA5 LINE L1 5820 6154 0 642 247 110 0 chr13 19813230 19813457 -99931441 + L1ME1 LINE L1 2806 3057 -3158 229 211 19 0 chr13 19813451 19813503 -99931395 + L1ME1 LINE L1 3762 3814 -2401 * 2190 123 3 0 chr13 19813533 19813835 -99931063 + AluSx SINE Alu 5 307 -5 2550 231 58 33 chr13 19813835 19814614 -99930284 + L1ME1 LINE L1 4053 4850 -1365 * 3066 208 86 28 chr13 19814605 19815505 -99929393 + L1ME1 LINE L1 5293 6399 -4 33 0 0 0 chr13 19816538 19816571 -99928327 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr13 19816730 19816759 -99928139 + AT_rich Low_complexity Low_complexity 1 29 0 660 287 121 18 chr13 19816882 19817105 -99927793 + MIR SINE MIR 13 258 -4 1529 119 80 88 chr13 19817980 19818260 -99926638 + L1MA8 LINE L1 5943 6221 -70 2282 113 0 0 chr13 19818260 19818562 -99926336 - AluSx SINE Alu -10 302 1 1529 119 80 88 chr13 19818562 19818633 -99926265 + L1MA8 LINE L1 6221 6291 0 472 320 75 23 chr13 19819715 19820021 -99924877 + L2 LINE L2 2253 2574 -740 892 225 67 0 chr13 19820131 19820340 -99924558 - MER46C DNA MER2_type -24 314 92 3351 149 9 11 chr13 19821830 19822399 -99922499 - L1MA9 LINE L1 0 6312 5745 338 385 8 0 chr13 19822678 19822800 -99922098 - L2 LINE L2 -9 3263 3141 2369 95 0 7 chr13 19822882 19823187 -99921711 + AluSq SINE Alu 1 303 -10 183 42 0 0 chr13 19823266 19823290 -99921608 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 387 393 22 11 chr13 19823484 19823756 -99921142 - L3 LINE CR1 -366 1211 937 348 259 152 25 chr13 19823974 19824171 -99920727 - MIR SINE MIR -21 241 20 1199 119 0 6 chr13 19825297 19825621 -99919277 + (CCA)n Simple_repeat Simple_repeat 1 503 0 579 269 12 29 chr13 19825622 19825793 -99919105 - MIR SINE MIR -9 253 86 30 0 0 0 chr13 19827379 19827409 -99917489 + AT_rich Low_complexity Low_complexity 1 30 0 507 209 29 64 chr13 19827714 19827886 -99917012 - MER104 DNA Tc2 0 180 15 206 224 20 0 chr13 19827952 19828001 -99916897 + (CCCTAA)n Simple_repeat Simple_repeat 4 53 0 229 405 41 15 chr13 19828001 19828268 -99916630 + L2 LINE L2 2463 2736 -578 1484 162 62 4 chr13 19828396 19828655 -99916243 - AluJo SINE Alu -38 274 1 1326 166 28 5 chr13 19829030 19829247 -99915651 + MER58A DNA MER1_type 1 222 -2 192 158 0 0 chr13 19830708 19830746 -99914152 + GA-rich Low_complexity Low_complexity 6 43 0 858 286 81 25 chr13 19830979 19831159 -99913739 - MLT1J LTR MaLR 0 511 343 2483 199 88 27 chr13 19831159 19831681 -99913217 + MLT2B3 LTR ERVL 1 554 0 858 286 81 25 chr13 19831681 19831955 -99912943 - MLT1J LTR MaLR -168 343 6 478 166 101 157 chr13 19832578 19832795 -99912103 + MER102b DNA MER1_type 137 341 0 354 348 90 32 chr13 19832798 19833198 -99911700 - L2 LINE L2 -1039 2275 1853 367 287 22 37 chr13 19833419 19833555 -99911343 - MIR SINE MIR -70 192 59 189 210 113 0 chr13 19834003 19834065 -99910833 + L2 LINE L2 3245 3313 0 711 299 0 15 chr13 19834179 19834383 -99910515 - MIR SINE MIR 0 262 62 2321 91 0 3 chr13 19834684 19834982 -99909916 - AluSx SINE Alu -15 297 1 328 271 133 13 chr13 19836492 19836643 -99908255 + MER5A DNA MER1_type 21 189 0 229 275 116 0 chr13 19836852 19836921 -99907977 - MIR SINE MIR -75 187 111 2225 111 10 0 chr13 19837043 19837341 -99907557 - AluSq SINE Alu -12 301 1 345 242 0 0 chr13 19837639 19837705 -99907193 + MER63 DNA MER1_type 682 747 -314 594 237 200 0 chr13 19840165 19840355 -99904543 - MIR SINE MIR -3 259 32 1867 211 40 11 chr13 19840837 19841283 -99903615 + MLT1C LTR MaLR 1 459 -8 260 262 262 0 chr13 19841292 19841395 -99903503 - MER5A DNA MER1_type -39 150 21 346 339 127 27 chr13 19841959 19842251 -99902647 + L2 LINE L2 2944 3264 -8 1222 49 0 27 chr13 19842799 19842983 -99901915 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 1092 289 50 56 chr13 19842983 19843660 -99901238 + L2 LINE L2 2655 3313 0 219 296 57 0 chr13 19843818 19843906 -99900992 - L2 LINE L2 0 3272 3180 375 347 95 46 chr13 19844321 19845119 -99899779 + L2 LINE L2 2220 3058 -214 2121 249 64 40 chr13 19845243 19846226 -99898672 - L1MEc LINE L1 -4494 1784 817 243 0 0 0 chr13 19846228 19846255 -99898643 + (TA)n Simple_repeat Simple_repeat 2 28 0 2612 147 12 7 chr13 19846255 19846678 -99898220 - L1MB2 LINE L1 -62 6109 5685 2070 260 92 54 chr13 19846679 19847441 -99897457 - L1MEc LINE L1 -5571 825 35 1770 155 17 28 chr13 19848169 19848460 -99896438 - AluJo SINE Alu -24 288 1 373 317 81 8 chr13 19848607 19848730 -99896168 + MIR3 SINE MIR 3 134 -74 570 274 88 34 chr13 19848756 19848960 -99895938 - MIR SINE MIR 0 262 48 669 230 131 80 chr13 19849147 19849634 -99895264 - L1MEd LINE L1 -4927 1192 681 1244 145 114 86 chr13 19849994 19850284 -99894614 - AluJb SINE Alu -14 298 1 498 283 66 0 chr13 19850292 19850458 -99894440 - L1MEd LINE L1 -5939 180 4 326 314 97 0 chr13 19850459 19850583 -99894315 - MIR SINE MIR -61 201 66 27 39 0 19 chr13 19851432 19851449 -99893449 + AT_rich Low_complexity Low_complexity 1 17 -34 1542 110 103 8 chr13 19851449 19851712 -99893186 + L1MA3 LINE L1 6018 6305 0 27 39 0 19 chr13 19851712 19851746 -99893152 + AT_rich Low_complexity Low_complexity 17 51 0 23 33 0 0 chr13 19852315 19852345 -99892553 + AT_rich Low_complexity Low_complexity 1 30 0 758 266 31 5 chr13 19852345 19852537 -99892361 - MIR SINE MIR -51 211 15 283 250 145 57 chr13 19854125 19854249 -99890649 + MIR3 SINE MIR 21 155 -53 5518 148 21 8 chr13 19854639 19855530 -99889368 + MER4D LTR ERV1 1 903 0 2504 183 63 51 chr13 19856009 19856534 -99888364 + LTR26B LTR ERV1 1 531 0 183 42 0 0 chr13 19856766 19856790 -99888108 + (GGCTG)n Simple_repeat Simple_repeat 4 27 0 219 227 0 0 chr13 19857286 19857330 -99887568 + GA-rich Low_complexity Low_complexity 2 45 0 1845 161 63 9 chr13 19858356 19858766 -99886132 - MER31A LTR ERV1 -19 447 14 337 310 155 41 chr13 19860374 19861106 -99883792 + L2 LINE L2 2234 3052 -220 258 268 45 18 chr13 19861161 19861273 -99883625 + MER65B LTR ERV1 1 115 -416 500 210 10 0 chr13 19861724 19861824 -99883074 + L2 LINE L2 3172 3272 0 192 200 0 78 chr13 19862771 19862834 -99882064 + L2 LINE L2 3207 3303 -10 2115 55 82 34 chr13 19863063 19863238 -99881660 - AluYa5 SINE Alu -4 307 111 2562 50 7 0 chr13 19863238 19863541 -99881357 - AluY SINE Alu -6 305 1 2115 55 82 34 chr13 19863541 19863658 -99881240 - AluYa5 SINE Alu -200 111 1 22 0 0 0 chr13 19864641 19864663 -99880235 + AT_rich Low_complexity Low_complexity 1 22 0 3489 211 91 82 chr13 19864709 19865964 -99878934 + L1MC4 LINE L1 6759 8028 -14 1839 207 39 0 chr13 19865964 19866298 -99878600 - MER7A DNA MER2_type -1 345 1 3489 211 91 82 chr13 19866298 19866314 -99878584 + L1MC4 LINE L1 8028 8042 0 526 236 32 74 chr13 19868250 19868466 -99876432 - HAL1 LINE L1 -1 2506 2300 897 211 17 28 chr13 19868661 19868841 -99876057 - MER45A DNA AcHobo 0 178 1 1421 286 136 32 chr13 19868994 19869871 -99875027 - HAL1 LINE L1 -343 2164 1197 307 155 32 0 chr13 19869877 19869952 -99874946 - Alu SINE Alu -3 299 239 329 305 168 31 chr13 19869984 19870178 -99874720 - HAL1 LINE L1 -1364 1143 977 216 97 0 0 chr13 19870178 19870209 -99874689 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 329 305 168 31 chr13 19870209 19870437 -99874461 - HAL1 LINE L1 -1530 977 663 193 234 0 0 chr13 19871868 19871915 -99872983 - MIR SINE MIR -111 151 105 2568 50 0 0 chr13 19872077 19872379 -99872519 + AluY SINE Alu 1 302 -9 322 401 28 19 chr13 19872486 19872698 -99872200 + L2 LINE L2 3032 3245 -27 2141 129 16 0 chr13 19872767 19873070 -99871828 - AluSx SINE Alu -4 308 1 2124 143 9 109 chr13 19874411 19874596 -99870302 + MLT2C1 LTR ERVL 1 118 -279 1501 172 16 67 chr13 19874596 19874910 -99869988 - AluJo SINE Alu -14 298 1 2124 143 9 109 chr13 19874910 19875165 -99869733 + MLT2C1 LTR ERVL 118 397 0 2359 69 3 0 chr13 19875776 19876064 -99868834 - AluSc SINE Alu -20 289 1 370 282 48 0 chr13 19876829 19876932 -99867966 + MIR SINE MIR 46 153 -109 2268 117 0 3 chr13 19877767 19878075 -99866823 + AluSx SINE Alu 5 311 -1 499 159 24 127 chr13 19878157 19878283 -99866615 + Tigger1 DNA MER2_type 6 118 -2300 255 31 0 0 chr13 19878283 19878315 -99866583 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1615 64 0 15 chr13 19878315 19878518 -99866380 - AluY SINE Alu -111 200 1 1097 71 0 0 chr13 19878529 19878670 -99866228 - AluY SINE Alu -1 310 170 15227 122 19 9 chr13 19878670 19880966 -99863932 + Tigger1 DNA MER2_type 101 2418 0 350 94 0 0 chr13 19881373 19881426 -99863472 - L1MA9 LINE L1 -255 6057 6005 235 316 103 32 chr13 19882699 19882854 -99862044 - MIR SINE MIR -16 246 81 209 214 24 48 chr13 19883229 19883313 -99861585 + A-rich Low_complexity Low_complexity 4 85 0 711 51 24 55 chr13 19885519 19885776 -99859122 + (TCTA)n Simple_repeat Simple_repeat 1 248 0 605 305 79 49 chr13 19886421 19887018 -99857880 - L1ME2 LINE L1 -293 5871 5257 410 329 48 14 chr13 19887122 19887268 -99857630 + MIR3 SINE MIR 40 190 -18 188 319 78 35 chr13 19887456 19887597 -99857301 + L2 LINE L2 3124 3270 -43 2262 100 7 0 chr13 19887957 19888256 -99856642 - AluSc SINE Alu -8 301 1 2646 98 3 35 chr13 19888610 19888671 -99856227 - THE1A LTR MaLR 0 355 294 2405 54 3 7 chr13 19888671 19888969 -99855929 - AluY SINE Alu -14 297 1 2646 98 3 35 chr13 19888969 19889274 -99855624 - THE1A LTR MaLR -61 294 1 829 181 0 0 chr13 19889838 19889976 -99854922 + FLAM_C SINE Alu 1 138 -5 1546 174 15 58 chr13 19889980 19890308 -99854590 + 7SLRNA srpRNA srpRNA 2 315 -5 2715 48 0 0 chr13 19890639 19890949 -99853949 + AluY SINE Alu 1 310 -1 2270 95 0 10 chr13 19891615 19891921 -99852977 - AluSx SINE Alu -9 303 1 186 314 54 50 chr13 19892248 19892487 -99852411 + L2 LINE L2 2602 2841 -473 331 78 78 0 chr13 19893105 19893156 -99851742 - MLT2A1 LTR ERVL 0 453 399 361 144 61 0 chr13 19893164 19893296 -99851602 + (TA)n Simple_repeat Simple_repeat 2 141 0 3126 53 23 5 chr13 19893298 19893691 -99851207 - MLT2A1 LTR ERVL -44 400 1 396 224 197 67 chr13 19893691 19893812 -99851086 + MARNA DNA Mariner 188 291 -295 2103 142 0 0 chr13 19893812 19894115 -99850783 - AluJb SINE Alu -9 303 1 396 224 197 67 chr13 19894115 19894239 -99850659 + MARNA DNA Mariner 291 466 -120 580 300 12 33 chr13 19895157 19895400 -99849498 + MIR SINE MIR 18 255 -7 393 298 39 44 chr13 19897216 19897397 -99847501 - MIR SINE MIR -70 192 13 746 171 0 8 chr13 19897516 19897645 -99847253 + FLAM_C SINE Alu 1 128 -5 1187 197 79 48 chr13 19897660 19897950 -99846948 + AluJo SINE Alu 2 300 -2 2119 104 24 3 chr13 19898187 19898475 -99846423 - AluSc SINE Alu -15 294 1 2251 94 44 0 chr13 19898535 19898832 -99846066 + AluSg SINE Alu 1 310 0 227 233 0 0 chr13 19900225 19900268 -99844630 - MER58A DNA MER1_type -5 219 177 446 227 0 0 chr13 19900268 19900356 -99844542 - MER58A DNA MER1_type 0 148 61 820 252 233 22 chr13 19900356 19900713 -99844185 + MER57A LTR ERV1 1 401 -2 270 299 30 0 chr13 19900713 19900777 -99844121 - MER58A DNA MER1_type -41 66 1 308 257 18 44 chr13 19901406 19901519 -99843379 - L2 LINE L2 0 3313 3204 1277 193 4 12 chr13 19902229 19902478 -99842420 + L1MB7 LINE L1 5649 5895 -289 1188 142 5 0 chr13 19902486 19902676 -99842222 - MER46B DNA MER2_type 0 236 46 5975 115 12 35 chr13 19902883 19903958 -99840940 - L1PB3 LINE L1 -2 6152 5097 682 134 225 0 chr13 19903961 19904103 -99840795 - MER46B DNA MER2_type -187 49 1 241 88 147 118 chr13 19904063 19904104 -99840794 + MER46A DNA MER2_type 97 142 -2589 * 1361 204 0 31 chr13 19904104 19904393 -99840505 + L1MB7 LINE L1 5904 6183 -1 241 88 147 118 chr13 19904393 19904419 -99840479 + MER46A DNA MER2_type 142 166 -70 21 0 0 0 chr13 19904630 19904651 -99840247 + AT_rich Low_complexity Low_complexity 1 21 0 2556 171 28 19 chr13 19905692 19906223 -99838675 - L1MA9 LINE L1 -2217 3929 3394 * 6660 164 52 15 chr13 19906218 19908356 -99836542 + L1MA9 LINE L1 3943 6164 -148 306 0 0 0 chr13 19908356 19908390 -99836508 + (CA)n Simple_repeat Simple_repeat 1 34 0 6660 164 52 15 chr13 19908390 19908472 -99836426 + L1MA9 LINE L1 6164 6242 -70 21 36 0 0 chr13 19908498 19908526 -99836372 + AT_rich Low_complexity Low_complexity 1 28 0 2071 141 0 3 chr13 19908594 19908891 -99836007 + AluJo SINE Alu 1 296 -16 2327 88 0 20 chr13 19909396 19909702 -99835196 - AluSq SINE Alu -13 300 1 261 239 64 46 chr13 19910369 19910478 -99834420 + MIR3 SINE MIR 90 200 -8 191 296 70 43 chr13 19910685 19910800 -99834098 - L2 LINE L2 -896 2418 2301 273 316 20 0 chr13 19912959 19913057 -99831841 + MER5A DNA MER1_type 10 109 -80 408 20 0 0 chr13 19913170 19913219 -99831679 + (TC)n Simple_repeat Simple_repeat 2 50 0 207 184 41 20 chr13 19914152 19914201 -99830697 - L3 LINE CR1 -40 1537 1488 259 349 34 20 chr13 19914203 19914352 -99830546 - L2 LINE L2 0 3272 3122 2464 54 7 0 chr13 19914511 19914807 -99830091 + AluY SINE Alu 1 298 -13 702 275 96 9 chr13 19914841 19915070 -99829828 - MIR SINE MIR -13 249 1 2497 149 23 44 chr13 19915252 19915734 -99829164 - L1MB3 LINE L1 0 6183 5712 208 365 45 5 chr13 19915828 19916050 -99828848 - L2 LINE L2 -662 2652 2422 2276 101 3 3 chr13 19916218 19916516 -99828382 + AluSq SINE Alu 6 303 -10 183 42 0 0 chr13 19916595 19916619 -99828279 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 325 380 0 0 chr13 19916813 19916971 -99827927 - L3 LINE CR1 -366 1211 1054 298 256 24 32 chr13 19917375 19917500 -99827398 - MIR SINE MIR -119 143 20 268 330 41 0 chr13 19918057 19918154 -99826744 + L2 LINE L2 3159 3259 -13 289 326 46 17 chr13 19918363 19918538 -99826360 + L1MC/D LINE L1 5694 5873 -1935 203 254 34 0 chr13 19918758 19918817 -99826081 + (TA)n Simple_repeat Simple_repeat 2 62 0 203 239 0 34 chr13 19918871 19918959 -99825939 + (TAAA)n Simple_repeat Simple_repeat 2 86 0 285 275 225 14 chr13 19919354 19919496 -99825402 + MER5B DNA MER1_type 6 177 -1 224 293 11 98 chr13 19919583 19919757 -99825141 + MER5A DNA MER1_type 1 159 -30 2540 61 48 40 chr13 19920161 19920540 -99824358 - L1PA5 LINE L1 -3 6151 5770 187 405 32 16 chr13 19921452 19921578 -99823320 + L3 LINE CR1 3 130 -1447 530 166 0 151 chr13 19921734 19921873 -99823025 + MLT2D LTR ERVL 295 412 -2 2043 66 0 0 chr13 19922166 19922407 -99822491 + AluY SINE Alu 1 241 -70 194 316 103 32 chr13 19923164 19923319 -99821579 - MIR SINE MIR -16 246 81 209 214 24 48 chr13 19923694 19923778 -99821120 + A-rich Low_complexity Low_complexity 4 85 0 377 51 25 38 chr13 19925982 19926061 -99818837 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 1050 187 72 59 chr13 19926216 19926428 -99818470 + L1MA9 LINE L1 5946 6179 -121 324 0 0 0 chr13 19926428 19926464 -99818434 + (CA)n Simple_repeat Simple_repeat 1 36 0 1050 187 72 59 chr13 19926464 19926588 -99818310 + L1MA9 LINE L1 6179 6300 0 2071 141 0 3 chr13 19926668 19926965 -99817933 + AluJo SINE Alu 1 296 -16 2293 91 0 23 chr13 19927470 19927777 -99817121 - AluSq SINE Alu -13 300 1 261 239 64 46 chr13 19928444 19928553 -99816345 + MIR3 SINE MIR 90 200 -8 191 296 70 43 chr13 19928760 19928875 -99816023 - L2 LINE L2 -896 2418 2301 273 316 20 0 chr13 19931034 19931132 -99813766 + MER5A DNA MER1_type 10 109 -80 408 20 0 0 chr13 19931245 19931294 -99813604 + (TC)n Simple_repeat Simple_repeat 2 50 0 207 184 41 20 chr13 19932227 19932276 -99812622 - L3 LINE CR1 -40 1537 1488 259 349 34 20 chr13 19932278 19932427 -99812471 - L2 LINE L2 0 3272 3122 2464 54 7 0 chr13 19932586 19932882 -99812016 + AluY SINE Alu 1 298 -13 702 275 96 9 chr13 19932916 19933145 -99811753 - MIR SINE MIR -13 249 1 2497 149 23 44 chr13 19933327 19933809 -99811089 - L1MB3 LINE L1 0 6183 5712 208 365 45 5 chr13 19933903 19934125 -99810773 - L2 LINE L2 -662 2652 2422 1996 127 0 10 chr13 19934293 19934584 -99810314 + AluSq SINE Alu 6 293 -20 2189 84 34 7 chr13 19934598 19934895 -99810003 + AluY SINE Alu 1 305 -6 2717 181 81 41 chr13 19935327 19936424 -99808474 + pTR5 LTR ERV1 11 581 -133 234 273 0 15 chr13 19937092 19937158 -99807740 - L1MC5 LINE L1 -48 7913 7849 1328 194 113 40 chr13 19937442 19937788 -99807110 - MLT1A2 LTR MaLR 0 374 4 496 284 68 4 chr13 19937793 19938067 -99806831 - L1MC4 LINE L1 -387 7655 7260 370 239 138 0 chr13 19938172 19938310 -99806588 - L1ME4a LINE L1 0 6121 5965 324 247 0 12 chr13 19938761 19938846 -99806052 + MER5A DNA MER1_type 26 109 -80 464 311 45 0 chr13 19939100 19939277 -99805621 + MIR SINE MIR 78 262 0 4777 158 35 22 chr13 19941462 19942352 -99802546 - L1MB3 LINE L1 0 6183 5283 649 298 44 116 chr13 19944712 19945125 -99799773 + L2 LINE L2 2884 3266 -6 4314 126 88 45 chr13 19945474 19946227 -99798671 + LTR1 LTR ERV1 1 785 0 181 275 28 128 chr13 19946288 19946397 -99798501 + L2 LINE L2 3127 3224 -48 646 333 185 28 chr13 19946504 19947261 -99797637 - L3 LINE CR1 -665 912 37 4258 111 65 6 chr13 19947973 19948605 -99796293 - L1PA16 LINE L1 -3 6163 5495 22 35 0 0 chr13 19948948 19948977 -99795921 + AT_rich Low_complexity Low_complexity 1 29 0 1662 108 48 4 chr13 19949280 19949548 -99795350 + L1PB4 LINE L1 5333 5612 -544 3416 118 13 104 chr13 19949548 19949630 -99795268 - LTR12 LTR ERV1 -134 580 492 2000 110 18 0 chr13 19949630 19949911 -99794987 - AluY SINE Alu -10 301 16 3416 118 13 104 chr13 19949911 19950465 -99794433 - LTR12 LTR ERV1 -222 492 2 3209 152 42 0 chr13 19950465 19950993 -99793905 + L1PB4 LINE L1 5607 6156 0 284 281 0 0 chr13 19952052 19952116 -99792782 + MER97b DNA MER1_type? 981 1044 -9 2429 80 3 0 chr13 19953450 19953750 -99791148 - AluY SINE Alu -10 301 1 253 250 238 0 chr13 19953750 19953834 -99791064 + MIR3 SINE MIR 102 205 -3 267 283 17 0 chr13 19953917 19953977 -99790921 + L2 LINE L2 3123 3183 -89 1149 158 5 0 chr13 19954031 19954221 -99790677 - L1MA5 LINE L1 0 6300 6110 208 240 60 0 chr13 19956198 19956248 -99788650 + MIR SINE MIR 83 135 -73 201 238 0 0 chr13 19956455 19956497 -99788401 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr13 19957009 19957030 -99787868 + AT_rich Low_complexity Low_complexity 1 21 0 2286 165 6 15 chr13 19959678 19960107 -99784791 + L1MA6 LINE L1 5621 6050 -250 1018 122 8 141 chr13 19960081 19960343 -99784555 + L1MB8 LINE L1 5899 6125 -53 * 34 0 0 0 chr13 19960343 19960377 -99784521 + AT_rich Low_complexity Low_complexity 1 34 0 2365 50 3 23 chr13 19960617 19960919 -99783979 + AluY SINE Alu 1 296 -15 189 274 0 0 chr13 19960981 19961032 -99783866 - L2 LINE L2 -1012 2302 2252 2336 74 3 16 chr13 19961348 19961660 -99783238 - AluY SINE Alu -3 308 1 196 326 153 0 chr13 19961664 19961762 -99783136 + L2 LINE L2 3197 3309 -4 2489 77 0 0 chr13 19962054 19962364 -99782534 - AluY SINE Alu -1 310 1 1560 177 27 17 chr13 19962652 19962951 -99781947 - AluJo SINE Alu -10 302 1 2399 70 0 16 chr13 19962951 19963266 -99781632 - AluY SINE Alu -1 310 1 643 109 22 51 chr13 19963272 19963410 -99781488 - L1MB8 LINE L1 0 6178 6045 3087 147 5 49 chr13 19963580 19964150 -99780748 - L1MA10 LINE L1 0 6334 5790 2581 211 116 33 chr13 19964169 19964919 -99779979 + MER21B LTR ERV1 12 823 -40 284 269 13 0 chr13 19964990 19965068 -99779830 - L1MA10 LINE L1 -385 5783 5705 2449 59 0 3 chr13 19965156 19965460 -99779438 - AluY SINE Alu -6 305 3 691 0 45 0 chr13 19966089 19966178 -99778720 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 1876 153 0 0 chr13 19966188 19966462 -99778436 - AluSx SINE Alu -38 274 1 219 139 0 0 chr13 19966934 19966970 -99777928 + (TC)n Simple_repeat Simple_repeat 2 37 0 214 260 0 39 chr13 19967183 19967260 -99777638 + (TCTCTG)n Simple_repeat Simple_repeat 4 77 0 402 281 59 51 chr13 19968280 19968499 -99776399 - MIR SINE MIR -33 229 11 794 56 0 1 chr13 19970827 19971104 -99773794 + AluY SINE Alu 15 327 0 667 291 36 47 chr13 19971424 19971689 -99773209 - MIR SINE MIR -1 261 5 21 71 0 0 chr13 19971978 19972020 -99772878 + AT_rich Low_complexity Low_complexity 1 42 0 2218 95 0 26 chr13 19972020 19972324 -99772574 - AluSq SINE Alu -17 296 1 2617 105 3 6 chr13 19972687 19973050 -99771848 - L1PB1 LINE L1 -7 6860 6499 498 126 0 27 chr13 19973051 19973162 -99771736 + (TA)n Simple_repeat Simple_repeat 1 108 0 317 100 117 0 chr13 19973162 19973222 -99771676 - L1PB1 LINE L1 -360 6507 6441 44931 38 2 6 chr13 19973225 19979405 -99765493 - L1PA3 LINE L1 0 6155 1 15686 168 35 11 chr13 19979405 19984621 -99760277 - L1PB1 LINE L1 -412 6455 1102 1545 141 114 15 chr13 19984649 19984912 -99759986 - AluJo SINE Alu -23 289 1 237 234 135 50 chr13 19984919 19985060 -99759838 - L1ME LINE L1 -392 5761 5609 2255 99 0 3 chr13 19985081 19985375 -99759523 - AluY SINE Alu -16 295 3 351 273 146 19 chr13 19985681 19985996 -99758902 - L1ME LINE L1 -805 5324 4970 428 256 45 23 chr13 19986247 19986423 -99758475 - L1ME LINE L1 -4980 1139 960 207 162 48 9 chr13 19986428 19986533 -99758365 + (TA)n Simple_repeat Simple_repeat 1 109 0 818 178 0 0 chr13 19986549 19986684 -99758214 - FRAM SINE Alu -5 171 37 826 297 111 46 chr13 19986835 19987546 -99757352 - L1ME LINE L1 -5328 791 35 2226 108 3 6 chr13 19988107 19988421 -99756477 + AluSp SINE Alu 1 313 0 214 344 0 0 chr13 19988538 19988599 -99756299 - L2 LINE L2 -26 3287 3227 201 171 0 0 chr13 19989358 19989393 -99755505 + A-rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 19991126 19991148 -99753750 + AT_rich Low_complexity Low_complexity 1 22 0 565 196 0 105 chr13 19991854 19992007 -99752891 - Charlie1 DNA MER1_type -2 2759 2623 * 776 236 107 9 chr13 19991994 19992210 -99752688 - Charlie1 DNA MER1_type -2522 239 3 282 366 53 0 chr13 19992292 19992423 -99752475 + MIR SINE MIR 8 145 -117 1581 172 0 0 chr13 19993642 19993910 -99750988 - AluSx SINE Alu -14 298 31 1582 188 30 73 chr13 19993911 19994309 -99750589 - LTR12 LTR ERV1 -234 480 100 278 209 57 76 chr13 19994313 19994418 -99750480 - AluS SINE Alu -228 75 1 1424 142 69 76 chr13 19994426 19994715 -99750183 - AluJo SINE Alu -14 288 2 275 289 73 35 chr13 19994722 19994875 -99750023 + MIR SINE MIR 30 198 -10 224 363 22 0 chr13 19995059 19995150 -99749748 - MIR SINE MIR -93 115 23 * 984 245 4 13 chr13 19995147 19995380 -99749518 + MIR SINE MIR 32 262 0 386 269 11 0 chr13 19998870 19998963 -99745935 + MIR SINE MIR 120 213 -49 459 0 0 0 chr13 19999370 19999421 -99745477 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 183 42 0 0 chr13 19999421 19999445 -99745453 + (TC)n Simple_repeat Simple_repeat 1 24 0 2193 82 14 0 chr13 19999445 19999738 -99745160 - AluY SINE Alu -14 297 1 266 235 74 49 chr13 20000080 20000161 -99744737 - L2 LINE L2 0 3313 3231 284 0 28 0 chr13 20001486 20001522 -99743376 + (TG)n Simple_repeat Simple_repeat 2 38 0 306 298 150 9 chr13 20002690 20002834 -99742064 + MIR SINE MIR 13 162 -67 751 288 212 15 chr13 20003141 20003999 -99740899 - L2 LINE L2 -5 3308 2271 321 47 0 0 chr13 20005366 20005409 -99739489 + (CA)n Simple_repeat Simple_repeat 1 43 0 420 55 0 0 chr13 20005598 20005653 -99739245 + (TG)n Simple_repeat Simple_repeat 2 56 0 427 188 22 28 chr13 20006683 20006864 -99738034 + (CATA)n Simple_repeat Simple_repeat 1 180 0 452 247 6 13 chr13 20006912 20007355 -99737543 + (CA)n Simple_repeat Simple_repeat 1 439 0 271 261 15 0 chr13 20007392 20007526 -99737372 + (CA)n Simple_repeat Simple_repeat 1 136 0 2178 69 7 10 chr13 20009276 20009586 -99735312 + AluY SINE Alu 1 309 0 525 146 0 0 chr13 20009900 20009982 -99734916 + AluS SINE Alu 2 83 -230 1797 114 66 0 chr13 20010213 20010484 -99734414 - AluSx SINE Alu -19 293 5 23 54 0 0 chr13 20012800 20012837 -99732061 + AT_rich Low_complexity Low_complexity 1 37 0 287 238 38 12 chr13 20013381 20013461 -99731437 + MER5A DNA MER1_type 102 183 -6 411 228 203 19 chr13 20013551 20013709 -99731189 + MER5A DNA MER1_type 1 187 -2 514 269 167 6 chr13 20013723 20013879 -99731019 - MER5A DNA MER1_type -5 184 4 183 289 0 0 chr13 20014091 20014136 -99730762 + L2 LINE L2 3269 3313 0 7310 33 0 5 chr13 20017512 20018370 -99726528 + L1PA4 LINE L1 5301 6154 -1 312 356 46 8 chr13 20019808 20019872 -99725026 + L2 LINE L2 2815 2875 -397 2478 138 74 2 chr13 20019872 20020292 -99724606 - LTR47A LTR ERVL 0 452 3 312 356 46 8 chr13 20020292 20020466 -99724432 + L2 LINE L2 2875 3062 -210 314 280 63 74 chr13 20020950 20021125 -99723773 - MLT1I LTR MaLR -2 407 235 4081 155 93 22 chr13 20021471 20021967 -99722931 - MER6 DNA MER2_type 0 865 289 192 77 0 0 chr13 20021967 20021993 -99722905 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 4081 155 93 22 chr13 20021993 20022302 -99722596 - MER6 DNA MER2_type -576 289 3 257 310 100 0 chr13 20022906 20023006 -99721892 - L2 LINE L2 -40 3273 3164 206 273 156 13 chr13 20023205 20023282 -99721616 + L2 LINE L2 3185 3272 0 644 100 8 0 chr13 20023471 20023591 -99721307 + (TG)n Simple_repeat Simple_repeat 2 122 0 1677 166 0 16 chr13 20025176 20025483 -99719415 + AluJb SINE Alu 1 302 -10 378 381 40 6 chr13 20026052 20026225 -99718673 - MER5A DNA MER1_type -10 179 1 2132 112 3 3 chr13 20027863 20028175 -99716723 + AluSx SINE Alu 1 312 0 275 338 49 56 chr13 20028487 20028792 -99716106 + L2 LINE L2 3005 3307 -6 229 181 57 48 chr13 20029369 20029474 -99715424 + MER113 DNA MER1_type? 115 220 -301 319 356 9 0 chr13 20029563 20029678 -99715220 + MIR SINE MIR 35 150 -112 1634 177 27 7 chr13 20030530 20030829 -99714069 + AluJb SINE Alu 1 305 -7 22 0 0 0 chr13 20030831 20030853 -99714045 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr13 20031052 20031093 -99713805 + AT_rich Low_complexity Low_complexity 1 41 0 254 314 83 58 chr13 20031626 20031942 -99712956 - L2 LINE L2 -218 3054 2716 250 319 154 21 chr13 20032312 20032500 -99712398 + MIR SINE MIR 44 256 -6 419 35 18 0 chr13 20032664 20032721 -99712177 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 275 305 150 55 chr13 20032866 20033066 -99711832 + L2 LINE L2 2263 2481 -833 2261 85 0 0 chr13 20033229 20033524 -99711374 - AluY SINE Alu -16 295 1 1191 263 83 97 chr13 20034089 20034790 -99710108 + MER21B LTR ERV1 24 714 -149 217 327 0 0 chr13 20035267 20035319 -99709579 - L3 LINE CR1 -7 1570 1519 194 216 0 0 chr13 20035330 20035367 -99709531 + L2 LINE L2 3276 3312 -1 180 246 40 103 chr13 20035365 20035491 -99709407 - MIR SINE MIR -73 135 18 * 195 348 29 0 chr13 20036580 20036649 -99708249 + MIR SINE MIR 79 149 -113 5999 121 234 85 chr13 20036686 20038163 -99706735 - pTR5 LTR ERV1 0 2438 743 496 268 0 0 chr13 20039393 20039505 -99705393 - MIR SINE MIR -88 174 63 275 268 24 102 chr13 20039729 20039856 -99705042 - MLT1L LTR MaLR -248 367 251 665 152 0 9 chr13 20040369 20040474 -99704424 - AluSg/x SINE Alu -13 299 196 278 342 36 9 chr13 20040476 20040604 -99704294 - MIR SINE MIR -62 146 18 220 194 0 0 chr13 20041695 20041731 -99703167 + polypurine Low_complexity Low_complexity 4 39 0 275 292 91 7 chr13 20042022 20042176 -99702722 + MER91A DNA MER1_type 27 193 -3 189 366 14 0 chr13 20042512 20042583 -99702315 + MIR SINE MIR 158 229 -33 2104 161 106 3 chr13 20043771 20044157 -99700741 - MSTB LTR MaLR 0 426 1 1405 190 52 78 chr13 20044324 20044724 -99700174 + MLT1B LTR MaLR 1 390 0 2209 73 14 10 chr13 20045371 20045660 -99699238 + AluY SINE Alu 1 290 -21 234 0 0 0 chr13 20045660 20045686 -99699212 + (TA)n Simple_repeat Simple_repeat 2 27 0 225 0 0 0 chr13 20046244 20046269 -99698629 + (T)n Simple_repeat Simple_repeat 1 25 0 2182 110 7 23 chr13 20047021 20047330 -99697568 - AluSx SINE Alu -8 304 1 344 310 23 18 chr13 20047885 20048056 -99696842 + GA-rich Low_complexity Low_complexity 2 173 0 181 250 42 0 chr13 20049247 20049295 -99695603 - MIR3 SINE MIR -6 202 153 266 360 18 0 chr13 20049404 20049518 -99695380 - MIR SINE MIR -124 138 23 419 35 18 0 chr13 20050587 20050644 -99694254 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 220 305 150 55 chr13 20050789 20050989 -99693909 + L2 LINE L2 2263 2481 -833 1910 145 3 0 chr13 20051153 20051443 -99693455 - AluSx SINE Alu -16 296 6 222 292 100 17 chr13 20051601 20051721 -99693177 + MIR SINE MIR 67 196 -66 2162 123 0 0 chr13 20051834 20052126 -99692772 - AluSx SINE Alu -20 292 1 2294 134 3 0 chr13 20052922 20053265 -99691633 - L1PA16 LINE L1 -9 6157 5814 786 144 0 0 chr13 20053408 20053533 -99691365 - L1PA16 LINE L1 -558 5608 5484 219 304 14 108 chr13 20053590 20053651 -99691247 - L2 LINE L2 0 3272 3207 2167 81 33 0 chr13 20053651 20053923 -99690975 + AluSq SINE Alu 1 281 -32 240 35 0 0 chr13 20053925 20053954 -99690944 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 219 304 14 108 chr13 20053954 20054037 -99690861 - L2 LINE L2 -66 3206 3139 466 228 53 53 chr13 20054388 20054577 -99690321 - L2 LINE L2 0 3313 3125 1148 249 150 3 chr13 20055529 20055960 -99688938 + MER110A LTR ERV1 3 477 0 2016 153 35 3 chr13 20056068 20056485 -99688413 + L1MC2 LINE L1 5185 5614 -719 462 170 203 17 chr13 20056485 20056610 -99688288 + MLT1A1 LTR MaLR 1 161 -213 6715 94 8 9 chr13 20056616 20056893 -99688005 + L1PA10 LINE L1 4686 4962 -1206 2268 86 0 30 chr13 20056893 20057197 -99687701 + AluY SINE Alu 1 295 -16 6715 94 8 9 chr13 20057197 20058375 -99686523 + L1PA10 LINE L1 4962 6136 -32 714 141 70 8 chr13 20058583 20058711 -99686187 + MLT1A1 LTR MaLR 226 361 -4 3577 169 37 23 chr13 20058716 20059416 -99685482 + L1MC2 LINE L1 5626 6335 -9 276 30 0 0 chr13 20061524 20061557 -99683341 + (TG)n Simple_repeat Simple_repeat 2 34 0 2002 148 3 3 chr13 20061672 20061970 -99682928 + AluJb SINE Alu 1 298 -14 312 252 72 65 chr13 20062178 20062363 -99682535 + LTR48B LTR ERV1 337 634 -10 308 231 141 16 chr13 20063791 20063912 -99680986 - MIR SINE MIR -16 246 111 621 260 39 0 chr13 20064152 20064333 -99680565 + MER20 DNA MER1_type 31 218 -1 2107 104 10 7 chr13 20064651 20064940 -99679958 + AluSg1 SINE Alu 1 290 -19 237 291 88 34 chr13 20065099 20065247 -99679651 + L2 LINE L2 2895 3050 -263 220 288 0 0 chr13 20065272 20065331 -99679567 + L2 LINE L2 3183 3241 -72 404 126 42 36 chr13 20065382 20065549 -99679349 + (TG)n Simple_repeat Simple_repeat 2 169 0 300 120 53 27 chr13 20065654 20065804 -99679094 + (TG)n Simple_repeat Simple_repeat 1 154 0 245 167 52 31 chr13 20065825 20065921 -99678977 + (TG)n Simple_repeat Simple_repeat 1 98 0 4390 126 62 23 chr13 20067272 20068013 -99676885 + LTR1 LTR ERV1 16 785 0 1076 204 50 11 chr13 20069831 20070091 -99674807 + MER33 DNA MER1_type 17 286 -38 189 121 0 0 chr13 20071015 20071048 -99673850 + (CAAAG)n Simple_repeat Simple_repeat 2 34 0 2228 122 0 0 chr13 20071957 20072260 -99672638 + AluSx SINE Alu 1 303 -9 327 49 0 0 chr13 20074252 20074293 -99670605 + (TG)n Simple_repeat Simple_repeat 1 41 0 362 57 19 0 chr13 20074409 20074462 -99670436 + (TG)n Simple_repeat Simple_repeat 1 54 0 2177 177 64 3 chr13 20074945 20075342 -99669556 + MSTB LTR MaLR 1 356 -8 28 0 0 0 chr13 20075773 20075801 -99669097 + AT_rich Low_complexity Low_complexity 1 28 0 1233 228 62 34 chr13 20076747 20077103 -99667795 - MLT1A2 LTR MaLR -8 366 1 945 164 0 7 chr13 20077371 20077523 -99667375 - AluJb SINE Alu -20 292 142 262 224 48 79 chr13 20080794 20080883 -99664015 + L1ME4a LINE L1 5959 6042 -79 2464 83 0 3 chr13 20080883 20081195 -99663703 - AluY SINE Alu 0 311 1 262 224 48 79 chr13 20081195 20081270 -99663628 + L1ME4a LINE L1 6042 6118 -3 661 320 34 10 chr13 20081607 20081904 -99662994 + L1M4 LINE L1 3562 3865 -2281 1008 246 98 20 chr13 20082422 20082862 -99662036 + L1M4 LINE L1 3997 4470 -1676 10141 160 42 15 chr13 20082862 20084671 -99660227 + Tigger4(Zombi) DNA MER2_type 1 1858 -873 299 195 171 0 chr13 20085740 20085822 -99659076 - MER5A DNA MER1_type -80 109 14 319 98 0 0 chr13 20087013 20087064 -99657834 + L1MA3 LINE L1 6124 6174 -131 272 313 0 0 chr13 20087887 20087954 -99656944 + polypyrimidine Low_complexity Low_complexity 3 69 0 2263 257 69 35 chr13 20088105 20088973 -99655925 - L1ME1 LINE L1 -15 6220 5323 504 240 76 20 chr13 20088984 20089234 -99655664 - L1ME1 LINE L1 -1229 4986 4723 513 272 86 50 chr13 20090428 20090847 -99654051 - L1ME1 LINE L1 -1907 4308 3875 670 300 69 23 chr13 20090868 20091391 -99653507 - L1ME1 LINE L1 -3248 2967 2421 226 197 118 0 chr13 20091387 20091463 -99653435 - L1ME1 LINE L1 -3707 2508 2424 * 2383 96 0 0 chr13 20091515 20091817 -99653081 - AluSg SINE Alu -8 302 1 277 213 124 41 chr13 20091817 20091986 -99652912 - L1ME1 LINE L1 -4099 2297 2115 367 137 27 0 chr13 20092150 20092223 -99652675 + GA-rich Low_complexity Low_complexity 2 76 0 359 282 143 32 chr13 20092259 20092448 -99652450 - L1ME1 LINE L1 -4595 1801 1584 2156 97 6 59 chr13 20092448 20092769 -99652129 - AluSq SINE Alu -9 304 1 359 282 143 32 chr13 20092769 20092795 -99652103 - L1ME1 LINE L1 -4812 1584 1562 1295 174 98 98 chr13 20092838 20093299 -99651599 + LTR1 LTR ERV1 1 461 -324 980 119 26 7 chr13 20093302 20093453 -99651445 + LTR1 LTR ERV1 632 785 0 272 273 120 24 chr13 20093521 20093730 -99651168 - L1ME1 LINE L1 -4897 1499 1271 616 271 42 47 chr13 20094287 20094479 -99650419 + MER58D DNA MER1_type 2 192 -194 331 281 0 22 chr13 20094479 20094568 -99650330 + MLT1D LTR MaLR 1 87 -539 987 236 65 11 chr13 20094616 20094879 -99650019 + MLT1C LTR MaLR 1 277 -190 676 160 9 0 chr13 20095034 20095140 -99649758 - MLT1D LTR MaLR -398 107 1 693 169 30 60 chr13 20095141 20095323 -99649575 + MLT1C LTR MaLR 304 463 -4 1180 227 15 91 chr13 20095349 20095754 -99649144 + MLT1D LTR MaLR 132 505 0 846 180 52 21 chr13 20095754 20095947 -99648951 + MER58D DNA MER1_type 188 386 0 2106 186 10 18 chr13 20096342 20096741 -99648157 + MSTD LTR MaLR 1 396 0 443 277 0 27 chr13 20097112 20097296 -99647602 + (TG)n Simple_repeat Simple_repeat 2 180 0 386 309 0 0 chr13 20097328 20097496 -99647402 + (TG)n Simple_repeat Simple_repeat 2 169 0 357 286 17 11 chr13 20097572 20097750 -99647148 + (TG)n Simple_repeat Simple_repeat 1 179 0 239 0 32 0 chr13 20099436 20099467 -99645431 + (CA)n Simple_repeat Simple_repeat 1 32 0 190 318 112 0 chr13 20100881 20100988 -99643910 - L2 LINE L2 0 3272 3154 243 284 99 0 chr13 20101804 20101885 -99643013 - L2 LINE L2 -15 3298 3210 210 118 0 0 chr13 20102221 20102255 -99642643 + (A)n Simple_repeat Simple_repeat 1 34 0 1804 141 106 62 chr13 20102374 20102664 -99642234 - LTR47A LTR ERVL 0 452 135 2126 113 10 7 chr13 20102664 20102973 -99641925 - AluSq SINE Alu -3 310 1 1804 141 106 62 chr13 20102973 20103115 -99641783 - LTR47A LTR ERVL -317 135 1 1949 149 52 19 chr13 20104372 20104735 -99640163 - THE1C LTR MaLR 0 375 1 435 98 0 49 chr13 20104735 20104817 -99640081 - THE1C-int LTR MaLR 0 1580 1503 9063 122 68 9 chr13 20104963 20106349 -99638549 - THE1C-int LTR MaLR -112 1468 1 1863 122 70 57 chr13 20106349 20106719 -99638179 - THE1C LTR MaLR 0 375 1 2300 66 11 0 chr13 20109864 20110188 -99634710 - AluYb8 SINE Alu 0 327 1 2194 123 0 13 chr13 20110835 20111145 -99633753 - AluSx SINE Alu -6 306 1 1668 128 15 11 chr13 20112531 20112796 -99632102 - Tigger2 DNA MER2_type -10 2708 2443 4549 142 16 19 chr13 20112863 20113611 -99631287 - Tigger2 DNA MER2_type -1972 746 1 213 139 0 0 chr13 20114389 20114432 -99630466 + (TC)n Simple_repeat Simple_repeat 2 44 0 1701 113 52 8 chr13 20115284 20115558 -99629340 - AluSx SINE Alu 0 312 38 229 368 26 0 chr13 20116310 20116424 -99628474 + MIR SINE MIR 32 148 -114 269 140 18 0 chr13 20116588 20116645 -99628253 + CT-rich Low_complexity Low_complexity 1 58 0 1907 129 14 10 chr13 20116645 20116940 -99627958 - AluSx SINE Alu -4 308 13 183 42 0 0 chr13 20116940 20116964 -99627934 + (GCCTG)n Simple_repeat Simple_repeat 1 24 0 2382 98 0 0 chr13 20116969 20117266 -99627632 - AluSx SINE Alu -11 301 5 186 118 0 0 chr13 20118768 20118802 -99626096 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 68 0 0 chr13 20119830 20119874 -99625024 - AluSp/q SINE Alu -36 267 224 318 111 0 0 chr13 20120648 20120693 -99624205 - L1MA5 LINE L1 -412 5888 5844 2950 260 143 40 chr13 20120693 20122359 -99622539 - L1M4 LINE L1 -768 5378 3540 847 250 14 111 chr13 20122367 20122711 -99622187 + MLT1D-int LTR MaLR 1055 1365 -6 730 176 38 109 chr13 20122720 20122958 -99621940 + MLT1D LTR MaLR 1 221 -284 287 326 45 7 chr13 20122981 20123247 -99621651 + L2 LINE L2 2933 3272 0 202 274 32 0 chr13 20123980 20124042 -99620856 - L2 LINE L2 0 3272 3209 2469 65 13 3 chr13 20124367 20124674 -99620224 - AluY SINE Alu -1 310 1 2191 91 0 60 chr13 20124977 20125296 -99619602 - AluSx SINE Alu -12 300 1 25 0 0 0 chr13 20125296 20125321 -99619577 + AT_rich Low_complexity Low_complexity 1 25 0 3077 127 52 2 chr13 20125321 20125816 -99619082 - L1MA3 LINE L1 0 6305 5786 713 93 0 9 chr13 20125916 20126024 -99618874 + L1PA8 LINE L1 6066 6172 0 1985 118 75 31 chr13 20127059 20127408 -99617490 - THE1B LTR MaLR 0 364 1 11518 105 6 1 chr13 20127408 20128981 -99615917 - THE1B-int LTR MaLR 0 1580 1 1586 147 28 28 chr13 20128981 20129266 -99615632 - THE1B LTR MaLR 0 364 80 449 119 81 0 chr13 20129397 20129557 -99615341 + (TA)n Simple_repeat Simple_repeat 1 173 0 474 180 19 1 chr13 20129557 20129661 -99615237 + Tigger4(Zombi) DNA MER2_type 228 2731 0 501 244 12 47 chr13 20129662 20129834 -99615064 + L1ME2 LINE L1 4470 4635 -1511 25 83 0 0 chr13 20129847 20129907 -99614991 + AT_rich Low_complexity Low_complexity 1 60 0 1333 262 33 5 chr13 20129933 20130360 -99614538 + L1ME2 LINE L1 4615 5053 -1093 1258 196 4 43 chr13 20130360 20130641 -99614257 + AluSg SINE Alu 39 308 -2 3182 249 51 8 chr13 20130642 20131711 -99613187 + L1ME2 LINE L1 5031 6153 -11 336 312 109 10 chr13 20131906 20132108 -99612790 + MIR SINE MIR 35 256 -6 199 296 45 61 chr13 20132146 20132278 -99612620 + L2 LINE L2 2932 3061 -211 1511 101 0 10 chr13 20132326 20132535 -99612363 - AluY SINE Alu -10 301 95 342 339 8 0 chr13 20185685 20185812 -99559086 - L2 LINE L2 -708 2606 2479 4061 154 112 96 chr13 20186358 20186652 -99558246 - L1MC3 LINE L1 -7 7778 7490 2070 87 0 4 chr13 20186652 20186929 -99557969 - AluY SINE Alu -15 296 21 4061 154 112 96 chr13 20186929 20187213 -99557685 - L1MC3 LINE L1 -295 7490 7212 347 256 0 0 chr13 20187213 20187295 -99557603 - MLT1F1 LTR MaLR -450 117 36 4061 154 112 96 chr13 20187295 20187692 -99557206 - L1MC3 LINE L1 -573 7212 6704 198 319 104 39 chr13 20187845 20188105 -99556793 + L2 LINE L2 2322 2598 -716 966 300 61 34 chr13 20188565 20188705 -99556193 - L2 LINE L2 -4 3309 3174 1042 181 229 3 chr13 20188705 20188997 -99555901 + MER46B DNA MER2_type 4 236 0 966 300 61 34 chr13 20188997 20189266 -99555632 - L2 LINE L2 -139 3174 2889 688 295 182 12 chr13 20189269 20189588 -99555310 - L2 LINE L2 -973 2341 1969 751 313 40 4 chr13 20189615 20189842 -99555056 - MIR SINE MIR -22 240 6 585 316 73 25 chr13 20189837 20190236 -99554662 - L2 LINE L2 -1332 1982 1565 * 192 307 40 0 chr13 20192415 20192490 -99552408 - MIR3 SINE MIR -24 184 107 504 272 92 32 chr13 20192888 20193105 -99551793 - MIR SINE MIR -10 252 23 258 287 0 0 chr13 20194103 20194246 -99550652 + (TA)n Simple_repeat Simple_repeat 1 143 0 2839 154 19 4 chr13 20196415 20196890 -99548008 - L1PB4 LINE L1 0 6156 5675 1176 171 0 33 chr13 20196891 20197102 -99547796 - AluJo SINE Alu -8 304 101 1838 160 6 25 chr13 20197255 20197573 -99547325 + AluJb SINE Alu 1 312 0 2198 120 13 0 chr13 20198920 20199220 -99545678 + AluSc SINE Alu 1 304 -5 2606 193 38 13 chr13 20202859 20203389 -99541509 - MER44D DNA MER2_type 0 605 8 201 311 194 0 chr13 20203419 20203522 -99541376 - MIR SINE MIR -74 188 66 240 282 0 14 chr13 20204287 20204358 -99540540 - MIR SINE MIR -66 142 73 244 241 0 0 chr13 20204391 20204449 -99540449 + T-rich Low_complexity Low_complexity 1 58 0 208 342 49 60 chr13 20205961 20206391 -99538507 - L2 LINE L2 -6 3266 2842 207 273 75 62 chr13 20207773 20207934 -99536964 + MIR SINE MIR 50 212 -50 437 302 47 31 chr13 20208129 20208387 -99536511 + L3 LINE CR1 1315 1576 -1 269 331 50 14 chr13 20208545 20208684 -99536214 - L3 LINE CR1 -2 1575 1432 186 254 36 0 chr13 20210579 20210634 -99534264 - L2 LINE L2 -2 3311 3255 240 175 63 63 chr13 20212614 20212677 -99532221 - MLT1I LTR MaLR -33 376 314 2539 72 0 0 chr13 20213228 20213535 -99531363 - AluY SINE Alu -4 307 1 212 329 127 0 chr13 20214846 20214925 -99529973 + L2 LINE L2 3147 3235 -37 309 165 16 50 chr13 20214972 20215093 -99529805 + GA-rich Low_complexity Low_complexity 4 120 0 187 281 130 75 chr13 20217126 20217511 -99527387 + L2 LINE L2 2572 2977 -337 472 293 213 10 chr13 20217927 20218227 -99526671 + MLT1J LTR MaLR 1 361 -150 356 274 10 0 chr13 20219162 20219264 -99525634 - MIR SINE MIR -112 150 48 1650 188 38 0 chr13 20219854 20220142 -99524756 + AluJb SINE Alu 5 303 -9 1746 118 57 18 chr13 20223192 20223471 -99521427 - AluSx SINE Alu -10 302 13 231 86 0 29 chr13 20224770 20224805 -99520093 - HAL1 LINE L1 -2188 319 286 2706 127 26 5 chr13 20225670 20226089 -99518809 - MSTA LTR MaLR 0 428 1 259 273 0 45 chr13 20227243 20227331 -99517567 + MER112 DNA MER1_type 144 227 -33 1431 219 95 24 chr13 20229625 20229995 -99514903 + MSTD LTR MaLR 1 396 0 6860 239 35 35 chr13 20229999 20231726 -99513172 + MSTD-int LTR MaLR 4 1730 -5 1310 204 139 14 chr13 20231731 20232083 -99512815 + MSTD LTR MaLR 1 396 0 335 169 14 0 chr13 20232257 20232328 -99512570 + CT-rich Low_complexity Low_complexity 1 72 0 189 0 0 0 chr13 20232328 20232349 -99512549 + (TTTCC)n Simple_repeat Simple_repeat 4 24 0 22 35 0 0 chr13 20232370 20232399 -99512499 + AT_rich Low_complexity Low_complexity 1 29 0 411 163 25 0 chr13 20233788 20233868 -99511030 - AluS SINE Alu -1 308 227 282 29 0 0 chr13 20233886 20233921 -99510977 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2074 110 0 24 chr13 20233921 20234208 -99510690 - AluSx SINE Alu -32 280 1 264 200 20 60 chr13 20234275 20234375 -99510523 - L1MC5 LINE L1 -48 7913 7818 646 75 0 0 chr13 20234595 20234689 -99510209 - AluY SINE Alu -1 310 217 229 343 75 8 chr13 20235585 20235719 -99509179 + MIR SINE MIR 39 181 -81 3345 187 31 26 chr13 20235982 20236698 -99508200 + LTR62 LTR ERVK 1 719 0 214 282 19 58 chr13 20236965 20237068 -99507830 - MIR SINE MIR -94 114 16 211 343 12 4 chr13 20237976 20238093 -99506805 + MIR SINE MIR 37 154 -67 900 259 34 7 chr13 20239461 20239754 -99505144 + L1M4 LINE L1 2950 3250 -2896 1270 189 95 5 chr13 20240773 20241201 -99503697 - LTR54 LTR ERV1 -1 497 1 25 83 0 0 chr13 20242115 20242175 -99502723 + AT_rich Low_complexity Low_complexity 1 60 0 227 79 26 0 chr13 20243693 20243731 -99501167 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1635 163 13 67 chr13 20243889 20244202 -99500696 + AluJo SINE Alu 13 308 -4 234 323 113 8 chr13 20245459 20245583 -99499315 + MIR SINE MIR 92 228 -34 2104 118 3 3 chr13 20245635 20245931 -99498967 - AluSx SINE Alu -16 296 1 276 255 10 82 chr13 20248086 20248184 -99496714 - MIR SINE MIR -18 244 154 351 113 0 0 chr13 20251621 20251674 -99493224 + (TG)n Simple_repeat Simple_repeat 2 54 0 1560 185 18 14 chr13 20251679 20251960 -99492938 - AluJo SINE Alu -30 282 1 3887 60 2 36 chr13 20252771 20253304 -99491594 - L1PA6 LINE L1 -5 6149 5635 564 249 11 28 chr13 20254117 20254294 -99490604 - MLT1A1 LTR MaLR -15 359 186 1016 173 0 12 chr13 20254309 20254482 -99490416 - FRAM SINE Alu -5 171 1 866 160 0 0 chr13 20254490 20254634 -99490264 - MLT1A1 LTR MaLR -220 145 2 206 328 31 0 chr13 20255273 20255337 -99489561 - L2 LINE L2 -70 3202 3137 344 157 41 27 chr13 20256483 20256630 -99488268 + (CA)n Simple_repeat Simple_repeat 1 149 0 346 211 45 30 chr13 20256641 20256774 -99488124 + (CA)n Simple_repeat Simple_repeat 1 135 0 238 172 35 23 chr13 20256787 20256874 -99488024 + (CA)n Simple_repeat Simple_repeat 1 88 0 875 287 137 45 chr13 20258497 20259030 -99485868 - MLT1G1 LTR MaLR 0 595 14 325 342 9 60 chr13 20259219 20259435 -99485463 - MIR3 SINE MIR -55 207 5 240 300 82 17 chr13 20260728 20260961 -99483937 + L1MEd LINE L1 901 1148 -4971 318 302 20 40 chr13 20261101 20261349 -99483549 + HAL1 LINE L1 1427 1669 -838 180 0 0 0 chr13 20262045 20262065 -99482833 + (TC)n Simple_repeat Simple_repeat 2 21 0 234 0 0 0 chr13 20262074 20262100 -99482798 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2363 73 3 0 chr13 20262103 20262391 -99482507 - AluY SINE Alu -22 289 1 324 351 57 16 chr13 20262403 20262648 -99482250 - L1ME LINE L1 -346 5816 5562 295 301 95 73 chr13 20265672 20266084 -99478814 - L2 LINE L2 -8 3264 2844 26 0 0 0 chr13 20266548 20266574 -99478324 + AT_rich Low_complexity Low_complexity 1 26 0 742 185 64 0 chr13 20266575 20266748 -99478150 - L1MA9 LINE L1 -46 6266 6083 1469 236 87 8 chr13 20266933 20267619 -99477279 + L1ME1 LINE L1 5002 5740 -426 509 244 88 42 chr13 20267714 20267952 -99476946 + L1ME1 LINE L1 5913 6161 -5 332 293 143 7 chr13 20268246 20268393 -99476505 - MIR SINE MIR -3 259 93 1496 274 16 16 chr13 20268664 20269179 -99475719 - L1ME1 LINE L1 -20 6146 5632 524 233 131 64 chr13 20269190 20269753 -99475145 - L1ME LINE L1 -5049 1034 459 234 111 19 56 chr13 20269894 20269948 -99474950 - L1ME LINE L1 -5685 385 334 202 205 26 0 chr13 20270070 20270109 -99474789 + GA-rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 20270910 20270932 -99473966 + AT_rich Low_complexity Low_complexity 1 22 0 678 329 49 23 chr13 20271783 20272087 -99472811 - L2 LINE L2 -4 3309 2998 253 212 96 111 chr13 20272601 20272799 -99472099 - MLT1J LTR MaLR -193 318 124 1327 227 79 67 chr13 20272840 20273374 -99471524 + MLT1F1 LTR MaLR 3 567 0 441 256 140 43 chr13 20274272 20274396 -99470502 - MIR SINE MIR -16 246 135 2166 121 7 7 chr13 20274396 20274703 -99470195 + AluSq SINE Alu 1 307 -6 441 256 140 43 chr13 20274703 20274785 -99470113 - MIR SINE MIR -127 135 20 553 309 45 22 chr13 20275899 20276122 -99468776 + MIR SINE MIR 35 262 0 323 381 23 23 chr13 20276135 20276308 -99468590 - MIR SINE MIR -71 191 19 23 0 0 0 chr13 20276366 20276389 -99468509 + AT_rich Low_complexity Low_complexity 1 23 0 613 348 163 12 chr13 20277085 20277669 -99467229 - L3 LINE CR1 -5 1572 901 358 117 0 39 chr13 20277711 20277788 -99467110 + (TCCCC)n Simple_repeat Simple_repeat 5 78 0 192 305 136 24 chr13 20277789 20278002 -99466896 - L3 LINE CR1 -701 876 640 609 291 110 89 chr13 20278557 20279247 -99465651 + HAL1 LINE L1 897 1608 -899 2293 93 0 7 chr13 20279247 20279547 -99465351 - AluSx SINE Alu -14 298 1 609 291 110 89 chr13 20279547 20279663 -99465235 + HAL1 LINE L1 1608 1720 -787 265 279 158 36 chr13 20280335 20280665 -99464233 + L1M4 LINE L1 2650 3019 -3127 541 352 109 28 chr13 20280698 20281201 -99463697 - L3 LINE CR1 -881 696 153 180 0 0 0 chr13 20281318 20281338 -99463560 + (T)n Simple_repeat Simple_repeat 1 20 0 231 302 73 10 chr13 20281609 20281705 -99463193 - L2 LINE L2 -34 3279 3178 2273 105 26 0 chr13 20284676 20284980 -99459918 + AluSx SINE Alu 1 312 0 335 298 19 10 chr13 20285722 20285826 -99459072 - MER5B DNA MER1_type -73 105 1 2253 186 21 5 chr13 20286570 20286989 -99457909 - MSTB LTR MaLR 0 426 1 514 311 45 70 chr13 20288085 20288533 -99456365 + L1M4 LINE L1 2853 3289 -2857 205 75 50 0 chr13 20289866 20289906 -99454992 + GA-rich Low_complexity Low_complexity 2 43 0 450 0 0 0 chr13 20289910 20289960 -99454938 + (TG)n Simple_repeat Simple_repeat 2 51 0 414 0 0 0 chr13 20290522 20290568 -99454330 + (CA)n Simple_repeat Simple_repeat 2 47 0 247 111 0 0 chr13 20290586 20290622 -99454276 + MLT2C2 LTR ERVL 429 464 0 2134 207 32 22 chr13 20290622 20291159 -99453739 - L1MB7 LINE L1 -256 6164 5623 * 4877 241 87 39 chr13 20291157 20291509 -99453389 - L1MB7 LINE L1 -2002 4380 4046 1543 203 3 20 chr13 20291509 20291804 -99453094 + AluJo SINE Alu 1 290 -22 4877 241 87 39 chr13 20291804 20295453 -99449445 - L1MB7 LINE L1 -2336 4046 68 405 0 0 0 chr13 20295453 20295498 -99449400 + (TG)n Simple_repeat Simple_repeat 2 46 0 4877 241 87 39 chr13 20295498 20295568 -99449330 - L1MB7 LINE L1 -6314 68 3 202 259 17 0 chr13 20297145 20297203 -99447695 + (TA)n Simple_repeat Simple_repeat 1 59 0 210 347 0 16 chr13 20298260 20298381 -99446517 + CT-rich Low_complexity Low_complexity 4 122 0 1085 207 95 0 chr13 20298761 20299015 -99445883 - MER110 LTR ERV1 -172 319 1 1257 246 163 20 chr13 20299813 20300219 -99444679 + L3 LINE CR1 1111 1574 -3 4390 187 48 14 chr13 20300570 20301468 -99443430 - L1MA7 LINE L1 -32 6259 5332 241 296 65 19 chr13 20301546 20301654 -99443244 + L2 LINE L2 3099 3211 -61 897 214 67 0 chr13 20303178 20303379 -99441519 + AluJo SINE Alu 96 308 0 219 184 0 41 chr13 20303972 20304021 -99440877 + CT-rich Low_complexity Low_complexity 4 50 0 21 0 0 0 chr13 20304370 20304391 -99440507 + AT_rich Low_complexity Low_complexity 1 21 0 422 296 122 13 chr13 20305610 20305840 -99439058 + MIR SINE MIR 7 261 -1 186 353 50 34 chr13 20305864 20305983 -99438915 - L2 LINE L2 -193 3079 2959 1196 305 117 54 chr13 20306062 20307212 -99437686 - L2 LINE L2 -444 2870 1611 345 47 0 0 chr13 20307212 20307255 -99437643 + (TG)n Simple_repeat Simple_repeat 2 44 0 1196 305 117 54 chr13 20307255 20307529 -99437369 - L2 LINE L2 -1703 1611 1356 590 262 43 0 chr13 20307562 20307726 -99437172 - MIR SINE MIR -3 259 89 2830 236 85 29 chr13 20308099 20308306 -99436592 - L1ME1 LINE L1 -5 6161 5967 1922 198 3 40 chr13 20308306 20308685 -99436213 - MLT1A1 LTR MaLR 0 365 1 2830 236 85 29 chr13 20308685 20310203 -99434695 - L1ME1 LINE L1 -199 5967 4358 * 3031 186 43 9 chr13 20310187 20310831 -99434067 - L1MC3 LINE L1 0 7785 7120 284 213 11 43 chr13 20310878 20310972 -99433926 + (CATA)n Simple_repeat Simple_repeat 2 92 0 2987 85 28 5 chr13 20310975 20311375 -99433523 - MLT2A2 LTR ERVL -44 409 1 8573 186 44 35 chr13 20311375 20312375 -99432523 - L1MC3 LINE L1 -660 7125 6099 3244 133 54 4 chr13 20312375 20312879 -99432019 - L1PB1 LINE L1 -3 6148 5620 8573 186 44 35 chr13 20312879 20313733 -99431165 - L1MC3 LINE L1 -1686 6099 5254 9333 35 10 3 chr13 20313780 20315631 -99429267 - L1PA3 LINE L1 -2 6153 4293 331 322 119 30 chr13 20317089 20317291 -99427607 - MIR SINE MIR -33 229 10 205 371 36 29 chr13 20317318 20317458 -99427440 + MER91A DNA MER1_type 1 141 -55 24 0 0 0 chr13 20319490 20319514 -99425384 + AT_rich Low_complexity Low_complexity 1 24 0 235 242 150 105 chr13 20321820 20321927 -99422971 - MER5B DNA MER1_type -17 161 43 2504 54 0 0 chr13 20321927 20322223 -99422675 + AluY SINE Alu 1 296 -15 235 242 150 105 chr13 20322223 20322268 -99422630 - MER5B DNA MER1_type -135 43 2 504 232 87 53 chr13 20323216 20323423 -99421475 - MLT1K LTR MaLR -9 579 366 374 169 0 0 chr13 20325222 20325287 -99419611 + Alu SINE Alu 235 299 -3 503 248 24 8 chr13 20325946 20326071 -99418827 - Charlie4 DNA MER1_type -12 1949 1823 385 273 76 35 chr13 20326146 20326344 -99418554 - LTR33 LTR ERVL -1 520 315 23 33 0 0 chr13 20327046 20327076 -99417822 + AT_rich Low_complexity Low_complexity 1 30 0 883 207 35 101 chr13 20329159 20329526 -99415372 - LTR37A LTR ERV1 0 426 84 239 305 17 44 chr13 20329664 20329835 -99415063 - MIR SINE MIR -21 241 3 23 0 0 0 chr13 20330154 20330177 -99414721 + AT_rich Low_complexity Low_complexity 1 23 0 627 211 57 51 chr13 20331164 20331339 -99413559 - MER63A DNA MER1_type -33 177 2 229 257 0 43 chr13 20331346 20331416 -99413482 + L2 LINE L2 3247 3313 0 232 253 172 20 chr13 20331601 20331700 -99413198 - MIR SINE MIR -112 150 37 180 258 45 30 chr13 20333581 20333647 -99411251 - L2 LINE L2 -1046 2268 2202 2096 152 35 11 chr13 20334388 20334763 -99410135 - MLT1B LTR MaLR 0 390 7 663 315 104 41 chr13 20335471 20335934 -99408964 - MLT1J LTR MaLR 0 511 20 2399 176 94 4 chr13 20336903 20337415 -99407483 + MER74A LTR ERVL 1 558 0 233 264 110 22 chr13 20337415 20337506 -99407392 + L2 LINE L2 3212 3310 -3 2211 100 10 0 chr13 20337907 20338019 -99406879 + AluSg SINE Alu 13 122 -188 243 0 0 0 chr13 20338019 20338046 -99406852 + (CA)n Simple_repeat Simple_repeat 2 28 0 2211 100 10 0 chr13 20338046 20338223 -99406675 + AluSg SINE Alu 122 305 -5 350 286 43 31 chr13 20340530 20340691 -99404207 - L3 LINE CR1 -35 1542 1380 494 317 81 52 chr13 20340795 20341180 -99403718 - L3 LINE CR1 -262 1315 920 2092 125 10 0 chr13 20341450 20341745 -99403153 + AluSx SINE Alu 1 298 -14 2488 69 0 19 chr13 20343878 20344195 -99400703 + AluY SINE Alu 1 311 0 209 238 16 16 chr13 20344210 20344273 -99400625 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 219 125 0 0 chr13 20344637 20344677 -99400221 + (TTAGGG)n Simple_repeat Simple_repeat 1 40 0 884 206 111 16 chr13 20344735 20344988 -99399910 - MER58B DNA MER1_type -9 332 56 2267 103 0 16 chr13 20345194 20345504 -99399394 - AluSg SINE Alu -5 305 1 2180 104 24 7 chr13 20345514 20345811 -99399087 - AluSg SINE Alu -8 302 1 311 350 51 10 chr13 20400808 20401005 -99343893 + L3 LINE CR1 685 889 -688 2144 116 0 3 chr13 20401027 20401336 -99343562 + AluSx SINE Alu 1 308 0 379 179 0 48 chr13 20401550 20401634 -99343264 - MIR SINE MIR -115 147 68 423 238 12 133 chr13 20401784 20401822 -99343076 + MIR SINE MIR 19 60 -202 2702 157 0 0 chr13 20401822 20402223 -99342675 + MER57A LTR ERV1 3 403 0 423 238 12 133 chr13 20402223 20402424 -99342474 + MIR SINE MIR 60 229 -33 432 284 112 0 chr13 20402913 20403029 -99341869 - L2 LINE L2 0 3272 3144 184 288 68 17 chr13 20403552 20403611 -99341287 + MER5B DNA MER1_type 80 141 -37 198 344 0 0 chr13 20406351 20406415 -99338483 + L2 LINE L2 3250 3313 0 338 264 181 28 chr13 20406870 20407014 -99337884 - MER5A DNA MER1_type 0 189 24 1676 166 32 32 chr13 20407075 20407383 -99337515 - AluJo SINE Alu 0 312 5 852 194 0 0 chr13 20409625 20409853 -99335045 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 1804 143 0 21 chr13 20411002 20411282 -99333616 + AluJb SINE Alu 9 282 -30 368 276 72 72 chr13 20412318 20412499 -99332399 - MIR SINE MIR -56 206 26 258 32 0 0 chr13 20414031 20414062 -99330836 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 396 59 0 0 chr13 20414801 20414852 -99330046 + (TG)n Simple_repeat Simple_repeat 1 51 0 203 309 229 29 chr13 20415859 20416034 -99328864 - MIR SINE MIR -7 255 46 224 293 0 0 chr13 20416676 20416734 -99328164 - L2 LINE L2 -97 3216 3159 390 234 0 0 chr13 20416793 20416947 -99327951 + (TG)n Simple_repeat Simple_repeat 1 154 0 819 196 68 0 chr13 20417086 20417249 -99327649 + MIR SINE MIR 67 240 -22 249 36 0 0 chr13 20417966 20417994 -99326904 - LTR1 LTR ERV1 0 785 758 490 248 16 31 chr13 20418041 20418170 -99326728 - HUERS-P2 LTR ERV1 -2961 127 1 3781 121 65 67 chr13 20418170 20418945 -99325953 - LTR1 LTR ERV1 0 785 13 601 205 6 99 chr13 20419694 20419865 -99325033 + MER63 DNA MER1_type 1 781 -281 666 103 45 13 chr13 20420038 20420194 -99324704 + (TCCA)n Simple_repeat Simple_repeat 3 163 0 201 270 124 0 chr13 20420195 20420284 -99324614 + MIR3 SINE MIR 103 202 -6 501 275 84 0 chr13 20420364 20420542 -99324356 + L2 LINE L2 3112 3304 -9 389 349 23 0 chr13 20420558 20420687 -99324211 - MIR3 SINE MIR -62 146 15 223 317 108 36 chr13 20421059 20421226 -99323672 - L2 LINE L2 -24 3289 3111 549 192 144 0 chr13 20422993 20423118 -99321780 + LTR54B LTR ERV1 1 143 -355 1230 149 18 18 chr13 20423145 20423367 -99321531 + LTR54 LTR ERV1 289 510 0 464 129 26 17 chr13 20424077 20424193 -99320705 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 457 176 0 0 chr13 20424195 20424280 -99320618 + (TATG)n Simple_repeat Simple_repeat 2 86 0 267 271 14 0 chr13 20424719 20424789 -99320109 + L2 LINE L2 3240 3310 -3 736 261 14 21 chr13 20424888 20425220 -99319678 - MLT1A2 LTR MaLR 0 374 1 306 339 43 0 chr13 20425994 20426109 -99318789 - MER91C DNA MER1_type 0 140 21 708 316 95 17 chr13 20426329 20426801 -99318097 + LTR33 LTR ERVL 13 521 0 195 263 0 0 chr13 20427093 20427131 -99317767 + L2 LINE L2 3184 3221 -92 1346 146 175 5 chr13 20427680 20428088 -99316810 + MER44D DNA MER2_type 1 536 -69 1986 204 123 82 chr13 20428090 20428805 -99316093 + LTR1B LTR ERV1 2 745 -81 536 100 0 50 chr13 20428890 20428970 -99315928 + MER44D DNA MER2_type 530 605 0 623 268 127 53 chr13 20429117 20429662 -99315236 - L1MC4 LINE L1 -1 8041 7457 2368 85 7 0 chr13 20430445 20430752 -99314146 - AluY SINE Alu -2 309 1 403 234 82 68 chr13 20430807 20431236 -99313662 + MER52A LTR ERV1 1 572 -706 1771 135 4 29 chr13 20431400 20431681 -99313217 - AluSx SINE Alu -38 274 1 189 0 0 0 chr13 20432959 20432980 -99311918 + (A)n Simple_repeat Simple_repeat 1 21 0 319 333 94 17 chr13 20433557 20433737 -99311161 + MIR SINE MIR 4 197 -65 306 73 0 0 chr13 20433775 20433816 -99311082 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2010 94 72 0 chr13 20433819 20434084 -99310814 - AluSx SINE Alu -28 284 1 22 0 0 0 chr13 20434084 20434106 -99310792 + AT_rich Low_complexity Low_complexity 1 22 0 295 117 11 43 chr13 20434316 20434410 -99310488 + (TA)n Simple_repeat Simple_repeat 2 92 0 612 285 21 0 chr13 20435484 20435719 -99309179 - L1MDa LINE L1 -2971 3569 3330 10445 215 58 20 chr13 20435820 20438607 -99306291 - L1MDa LINE L1 -3630 2910 17 341 278 46 0 chr13 20438812 20438920 -99305978 - MIR SINE MIR -71 191 79 1252 264 71 23 chr13 20439145 20439584 -99305314 + LTR40c LTR ERVL 1 460 -5 291 28 0 0 chr13 20439936 20439972 -99304926 + (T)n Simple_repeat Simple_repeat 1 36 0 200 122 0 24 chr13 20440760 20440801 -99304097 + (TG)n Simple_repeat Simple_repeat 1 40 0 2331 90 0 13 chr13 20441869 20442179 -99302719 + AluY SINE Alu 1 306 -5 23 0 0 0 chr13 20442844 20442867 -99302031 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 20443247 20443270 -99301628 + (TA)n Simple_repeat Simple_repeat 1 23 0 191 245 0 41 chr13 20443876 20443925 -99300973 - L2 LINE L2 -16 3256 3210 292 250 0 0 chr13 20445090 20445150 -99299748 - L2 LINE L2 0 3313 3254 30 0 0 0 chr13 20445249 20445279 -99299619 + AT_rich Low_complexity Low_complexity 1 30 0 22 80 0 0 chr13 20445398 20445448 -99299450 + AT_rich Low_complexity Low_complexity 1 50 0 728 209 0 7 chr13 20445557 20445710 -99299188 - MLT1A1 LTR MaLR -213 152 1 584 296 21 34 chr13 20445869 20446102 -99298796 + MLT1J1 LTR MaLR 206 435 -11 1235 255 77 17 chr13 20446364 20446619 -99298279 - MLT1C LTR MaLR 0 467 178 378 0 0 0 chr13 20446619 20446661 -99298237 + (TG)n Simple_repeat Simple_repeat 2 43 0 1235 255 77 17 chr13 20446661 20446809 -99298089 - MLT1C LTR MaLR -289 178 40 238 203 0 17 chr13 20447421 20447480 -99297418 + MLT1J2 LTR MaLR 369 426 -24 289 285 115 33 chr13 20447512 20447624 -99297274 - L1ME LINE L1 -336 5785 5684 1786 104 4 4 chr13 20447624 20447864 -99297034 - AluSg/x SINE Alu 0 312 73 * 2346 74 0 17 chr13 20447862 20448161 -99296737 - AluY SINE Alu -17 294 1 289 285 115 33 chr13 20448161 20448319 -99296579 - L1ME LINE L1 -734 5387 5494 642 335 97 36 chr13 20448380 20448989 -99295909 + L2 LINE L2 1784 2429 -885 1134 260 142 21 chr13 20449054 20449520 -99295378 + MLT1E LTR MaLR 72 593 0 2139 118 3 22 chr13 20451015 20451329 -99293569 - AluSx SINE Alu -4 308 1 647 233 39 24 chr13 20451472 20451678 -99293220 + MER3 DNA MER1_type 1 209 0 181 229 0 0 chr13 20451785 20451820 -99293078 - L2 LINE L2 -20 3293 3259 390 74 0 0 chr13 20453374 20453428 -99291470 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 646 209 43 6 chr13 20454898 20455061 -99289837 + MER5A DNA MER1_type 3 171 -18 321 343 70 29 chr13 20455057 20455229 -99289669 + MIR SINE MIR 63 241 -21 * 297 258 258 0 chr13 20455809 20455898 -99289000 + MER5A DNA MER1_type 49 160 -29 207 291 70 57 chr13 20456768 20456926 -99287972 + MIR SINE MIR 93 252 -10 798 215 97 45 chr13 20458780 20459068 -99285830 + L1MDb LINE L1 43 345 -6064 304 327 60 33 chr13 20459331 20459750 -99285148 + L1M4 LINE L1 3786 4215 -1931 272 248 88 9 chr13 20459944 20459957 -99284941 - L1M4 LINE L1 -1302 4844 4833 2398 84 3 0 chr13 20459957 20460255 -99284643 - AluY SINE Alu -12 299 1 272 248 88 9 chr13 20460255 20460354 -99284544 - L1M4 LINE L1 -1313 4833 4723 23 33 0 0 chr13 20460724 20460754 -99284144 + AT_rich Low_complexity Low_complexity 1 30 0 535 183 148 0 chr13 20461239 20461354 -99283544 - FLAM_A SINE Alu -1 132 1 2314 202 127 33 chr13 20461503 20462346 -99282552 - MER69 DNA AcHobo -49 2477 1556 462 307 76 71 chr13 20462347 20462662 -99282236 + L2 LINE L2 2687 3010 -303 1372 191 25 86 chr13 20462662 20462986 -99281912 - AluJo SINE Alu -8 304 1 462 307 76 71 chr13 20462986 20463250 -99281648 + L2 LINE L2 3010 3271 -42 278 293 35 9 chr13 20463345 20463461 -99281437 - MER103 DNA DNA -45 121 3 549 350 120 19 chr13 20463641 20464067 -99280831 - L2 LINE L2 0 3272 2804 23 33 0 0 chr13 20465196 20465226 -99279672 + AT_rich Low_complexity Low_complexity 1 30 0 476 150 20 30 chr13 20465235 20465335 -99279563 - L1MA5 LINE L1 -2 6298 6200 231 356 58 19 chr13 20466184 20466211 -99278687 + L2 LINE L2 3154 3178 -94 2390 126 22 0 chr13 20466211 20466567 -99278331 - THE1B LTR MaLR 0 364 1 231 356 58 19 chr13 20466567 20466643 -99278255 + L2 LINE L2 3178 3261 -11 942 280 59 42 chr13 20466662 20467133 -99277765 - LTR16C LTR ERVL -9 482 4 3567 243 29 28 chr13 20467239 20468361 -99276537 - L1M4 LINE L1 -1209 4937 3814 3453 189 18 49 chr13 20468361 20469052 -99275846 + L1MB5 LINE L1 5160 5821 -353 2404 78 0 13 chr13 20469052 20469361 -99275537 + AluY SINE Alu 1 305 -6 3453 189 18 49 chr13 20469361 20469657 -99275241 + L1MB5 LINE L1 5821 6125 -49 309 260 75 12 chr13 20471080 20471253 -99273645 - L1ME4a LINE L1 -98 6023 5840 21 0 0 0 chr13 20471296 20471317 -99273581 + AT_rich Low_complexity Low_complexity 1 21 0 237 240 13 0 chr13 20471497 20471572 -99273326 - L1M4 LINE L1 -3959 2187 2112 1240 153 0 0 chr13 20471707 20471910 -99272988 - L1PA13 LINE L1 -3 6160 5958 2358 169 46 26 chr13 20472179 20472677 -99272221 - L1MC1 LINE L1 -6 6327 5820 1811 152 34 9 chr13 20472685 20473008 -99271890 - L1MC1 LINE L1 -562 5771 5441 948 202 23 43 chr13 20473010 20473267 -99271631 + MSTD LTR MaLR 145 396 0 290 289 13 13 chr13 20474068 20474144 -99270754 - MIR SINE MIR -159 103 28 2440 69 0 28 chr13 20476105 20476422 -99268476 - AluY SINE Alu -3 308 1 298 243 56 56 chr13 20477985 20478092 -99266806 - L2 LINE L2 0 3313 3207 843 202 10 30 chr13 20478230 20478433 -99266465 - MER3 DNA MER1_type -9 200 2 638 280 69 13 chr13 20478771 20479003 -99265895 - L2 LINE L2 -1 3312 3068 1412 259 120 30 chr13 20479003 20479551 -99265347 - L1MEc LINE L1 -3706 2509 2012 1801 103 118 8 chr13 20479551 20479813 -99265085 - AluSg1 SINE Alu -18 291 1 1412 259 120 30 chr13 20479813 20480365 -99264533 - L1MEc LINE L1 -4203 2012 1511 2583 123 5 0 chr13 20480365 20480738 -99264160 - THE1C LTR MaLR 0 375 1 10221 115 45 3 chr13 20480738 20482254 -99262644 - THE1C-int LTR MaLR 0 1580 1 2631 106 3 13 chr13 20482255 20482633 -99262265 - THE1C LTR MaLR -1 374 1 1412 259 120 30 chr13 20482633 20482696 -99262202 - L1MEc LINE L1 -4703 1512 1283 1552 188 14 17 chr13 20482696 20482988 -99261910 + AluJb SINE Alu 1 291 -21 574 304 80 30 chr13 20483131 20483496 -99261402 - L2 LINE L2 -824 2490 2108 2093 249 37 22 chr13 20483661 20483738 -99261160 - L1M4 LINE L1 -1816 4828 4754 192 77 0 0 chr13 20483738 20483764 -99261134 + (TG)n Simple_repeat Simple_repeat 2 27 0 2093 249 37 22 chr13 20483764 20484440 -99260458 - L1M4 LINE L1 -1890 4754 4064 1144 204 84 62 chr13 20484440 20484843 -99260055 - MLT1C LTR MaLR 0 467 56 519 273 32 16 chr13 20484886 20485135 -99259763 - L1M4 LINE L1 -2575 4069 3817 * 6242 70 6 30 chr13 20485105 20486017 -99258881 - L1PA7 LINE L1 -3 6649 5760 648 239 44 0 chr13 20486011 20486191 -99258707 - L1M4 LINE L1 -6353 189 2 * 283 370 0 16 chr13 20486758 20486885 -99258013 - MIR3 SINE MIR -6 202 78 290 230 103 23 chr13 20487208 20487295 -99257603 - L2 LINE L2 -10 3262 3169 188 214 71 0 chr13 20487783 20487825 -99257073 - L2 LINE L2 -2 3311 3267 1255 202 77 36 chr13 20489273 20489664 -99255234 + MLT1C LTR MaLR 60 466 -1 477 260 3 39 chr13 20490610 20490940 -99253958 + CT-rich Low_complexity Low_complexity 1 318 0 7027 54 22 0 chr13 20491056 20491986 -99252912 - L1PA7 LINE L1 -4 6150 5215 12493 130 8 27 chr13 20491986 20495059 -99249839 - L1P3 LINE L1 -3393 3068 12 21 36 0 0 chr13 20495060 20495088 -99249810 + AT_rich Low_complexity Low_complexity 1 28 0 515 100 11 11 chr13 20496934 20497024 -99247874 - L1MB8 LINE L1 0 6178 6089 3356 175 45 7 chr13 20497039 20497748 -99247150 - L1MB4 LINE L1 -6 6174 5439 217 237 129 21 chr13 20497964 20498057 -99246841 + MIR SINE MIR 150 252 -10 2368 72 7 3 chr13 20499942 20500234 -99244664 + AluSq SINE Alu 1 293 -20 1216 126 37 0 chr13 20500287 20500477 -99244421 + MER30 DNA MER1_type 1 197 -33 914 231 114 70 chr13 20502574 20503003 -99241895 + LTR37B LTR ERV1 21 468 0 38 39 0 0 chr13 20503304 20503356 -99241542 + AT_rich Low_complexity Low_complexity 1 52 0 238 329 14 0 chr13 20503503 20503576 -99241322 - L2 LINE L2 -206 3066 2993 320 161 81 0 chr13 20504764 20504778 -99240120 - MER46A DNA MER2_type -73 163 145 13965 142 19 107 chr13 20504778 20507113 -99237785 + Tigger4(Zombi) DNA MER2_type 1 2016 -715 2538 20 20 0 chr13 20507113 20507414 -99237484 + L1PA2 LINE L1 5846 6155 0 13965 142 19 107 chr13 20507414 20508072 -99236826 + Tigger4(Zombi) DNA MER2_type 2016 2730 -1 755 163 7 7 chr13 20508230 20508365 -99236533 + Tigger4(Zombi) DNA MER2_type 1803 1937 -794 333 321 52 33 chr13 20508401 20508613 -99236285 + L1MEc LINE L1 1304 1519 -4877 335 219 30 116 chr13 20508910 20509074 -99235824 + L1MEc LINE L1 2217 2366 -3849 405 204 176 19 chr13 20509112 20509220 -99235678 - L2 LINE L2 -2 3311 3187 403 319 95 51 chr13 20509393 20509782 -99235116 - LTR33 LTR ERVL -11 510 105 316 285 68 82 chr13 20509854 20510135 -99234763 + L1MEc LINE L1 3062 3338 -2877 692 347 34 9 chr13 20510405 20510728 -99234170 + MLT1J LTR MaLR 71 401 -110 1867 121 0 4 chr13 20511242 20511498 -99233400 + AluSx SINE Alu 35 289 -23 499 313 72 24 chr13 20511650 20511985 -99232913 + L1MEc LINE L1 118 468 -5928 * 1725 268 44 40 chr13 20511970 20512968 -99231930 + L1MEc LINE L1 2545 3546 -2669 862 237 68 22 chr13 20512973 20513251 -99231647 - L1MB8 LINE L1 0 6178 5888 2653 201 22 30 chr13 20513254 20514170 -99230728 - L1MB8 LINE L1 -428 5756 4854 2018 107 0 58 chr13 20514170 20514480 -99230418 + AluSx SINE Alu 1 292 -20 2653 201 22 30 chr13 20514480 20514673 -99230225 - L1MB8 LINE L1 -1330 4854 4661 4353 195 70 6 chr13 20514673 20515515 -99229383 - MER54A LTR ERVL -5 896 1 336 152 45 125 chr13 20515521 20515633 -99229265 - L1MB8 LINE L1 -1482 4664 4562 2053 149 97 20 chr13 20515635 20516025 -99228873 + MSTA LTR MaLR 9 428 0 8240 188 43 24 chr13 20516025 20516494 -99228404 + MSTA-int LTR MaLR 1 460 -1191 2789 22 0 0 chr13 20516494 20516805 -99228093 + AluYa5 SINE Alu 1 311 0 8240 188 43 24 chr13 20516805 20517956 -99226942 + MSTA-int LTR MaLR 460 1651 0 2169 134 84 22 chr13 20517956 20518359 -99226539 + MSTA LTR MaLR 1 428 0 1815 237 18 27 chr13 20518359 20518908 -99225990 - L1MB8 LINE L1 -1582 4564 4021 213 39 0 0 chr13 20518913 20518939 -99225959 + (TG)n Simple_repeat Simple_repeat 2 27 0 10300 159 9 3 chr13 20518974 20520971 -99223927 + L1P4 LINE L1 3511 5515 -653 883 214 0 6 chr13 20520982 20521155 -99223743 - AluJb SINE Alu -25 287 116 1497 196 58 58 chr13 20521155 20521583 -99223315 + L1ME1 LINE L1 5510 6079 -255 2799 19 0 0 chr13 20521583 20521893 -99223005 + AluYa5 SINE Alu 1 310 -1 1497 196 58 58 chr13 20521893 20522140 -99222758 + L1ME1 LINE L1 6079 6325 -9 1356 229 38 24 chr13 20522144 20522484 -99222414 + MLT1A1 LTR MaLR 3 347 -18 522 271 21 0 chr13 20522558 20522746 -99222152 + L1ME1 LINE L1 2189 2380 -3766 1037 184 68 138 chr13 20522746 20523143 -99221755 - LOR1a LTR ERV1 -13 484 116 2035 284 65 12 chr13 20523174 20524229 -99220669 + L1ME1 LINE L1 2375 3485 -2661 43168 48 5 0 chr13 20524244 20530369 -99214529 + L1PA4 LINE L1 4 6155 0 3279 260 115 24 chr13 20530384 20530642 -99214256 + L1ME1 LINE L1 3497 3730 -2436 2200 79 4 0 chr13 20530642 20530920 -99213978 + AluY SINE Alu 19 297 -14 3279 260 115 24 chr13 20530920 20533093 -99211805 + L1ME1 LINE L1 3730 6131 -35 2154 75 11 4 chr13 20533562 20533872 -99211026 + AluY SINE Alu 1 312 0 23 0 0 0 chr13 20534732 20534755 -99210143 + AT_rich Low_complexity Low_complexity 1 23 0 1441 149 52 45 chr13 20534883 20535192 -99209706 - L1MA9 LINE L1 -5 6307 5997 28 0 0 0 chr13 20535696 20535724 -99209174 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 20536381 20536409 -99208489 + AT_rich Low_complexity Low_complexity 1 28 0 2411 65 3 0 chr13 20536409 20536701 -99208197 + AluSp SINE Alu 1 293 -20 8184 169 24 51 chr13 20536704 20539244 -99205654 - L1MA4 LINE L1 -8 6292 3827 5936 23 0 0 chr13 20539244 20539931 -99204967 - L1PA2 LINE L1 -2 6153 5467 8184 169 24 51 chr13 20539931 20540204 -99204694 - L1MA4 LINE L1 -2473 3827 3548 10241 181 16 2 chr13 20540214 20542933 -99201965 + L1PA13 LINE L1 3428 6163 0 5365 166 45 16 chr13 20542933 20543442 -99201456 + L1MA5 LINE L1 4325 4818 -1482 1119 169 29 14 chr13 20543442 20543649 -99201249 - MER6B DNA MER2_type 0 210 1 5365 166 45 16 chr13 20543649 20545058 -99199840 + L1MA5 LINE L1 4818 6299 -1 25 31 0 0 chr13 20545213 20545245 -99199653 + AT_rich Low_complexity Low_complexity 1 32 0 228 35 0 0 chr13 20546052 20546081 -99198817 + (TG)n Simple_repeat Simple_repeat 2 30 0 231 88 0 0 chr13 20546946 20546980 -99197918 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 4146 129 9 5 chr13 20547169 20547819 -99197079 - MER39B LTR ERV1 0 653 1 1015 211 106 116 chr13 20547893 20548489 -99196409 + LTR49 LTR ERV1 5 594 -1 2044 161 36 28 chr13 20549370 20549730 -99195168 - THE1B LTR MaLR -1 363 1 11175 107 14 0 chr13 20549730 20551289 -99193609 - THE1B-int LTR MaLR 0 1580 1 2177 138 33 25 chr13 20551289 20551650 -99193248 - THE1B LTR MaLR 0 364 1 32 0 0 0 chr13 20551715 20551747 -99193151 + AT_rich Low_complexity Low_complexity 1 32 0 733 204 41 0 chr13 20552220 20552367 -99192531 + MLT1J2 LTR MaLR 16 168 -282 492 251 32 70 chr13 20552406 20552593 -99192305 + MLT1J2 LTR MaLR 245 424 -26 24 53 0 0 chr13 20553959 20553997 -99190901 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 20554639 20554660 -99190238 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr13 20555024 20555070 -99189828 + (TG)n Simple_repeat Simple_repeat 2 47 0 309 290 74 79 chr13 20556128 20556507 -99188391 + L1MDa LINE L1 1039 1415 -5125 1608 299 176 18 chr13 20556519 20557291 -99187607 + L1M4b LINE L1 374 1267 -5592 1544 190 83 21 chr13 20557299 20557672 -99187226 + MSTD LTR MaLR 1 396 0 312 27 0 0 chr13 20557908 20557945 -99186953 + (TTA)n Simple_repeat Simple_repeat 3 39 0 14588 32 1 1 chr13 20557945 20560442 -99184456 - L1PA4 LINE L1 -18 6137 3636 2274 77 7 0 chr13 20562481 20562768 -99182130 + AluSp SINE Alu 14 302 -11 2650 42 0 0 chr13 20563086 20563392 -99181506 - AluY SINE Alu -5 306 1 232 259 19 0 chr13 20563435 20563543 -99181355 + (TA)n Simple_repeat Simple_repeat 1 110 0 262 336 118 50 chr13 20563775 20564132 -99180766 - L2 LINE L2 -12 3301 2921 582 254 57 89 chr13 20564873 20565366 -99179532 + MLT1H LTR MaLR 39 595 0 425 131 12 0 chr13 20566031 20566115 -99178783 + CT-rich Low_complexity Low_complexity 2 86 0 584 347 98 23 chr13 20566155 20566593 -99178305 + L3 LINE CR1 916 1386 -191 21 0 0 0 chr13 20567231 20567252 -99177646 + AT_rich Low_complexity Low_complexity 1 21 0 585 287 35 17 chr13 20569251 20569425 -99175473 + MIR SINE MIR 36 212 -50 491 266 167 27 chr13 20569998 20570220 -99174678 + MIR SINE MIR 10 262 0 258 268 0 0 chr13 20570429 20570541 -99174357 + (TA)n Simple_repeat Simple_repeat 2 113 0 241 318 0 0 chr13 20571351 20571414 -99173484 - L3b LINE CR1 -139 1444 1382 2351 92 6 13 chr13 20571839 20572154 -99172744 + AluSp SINE Alu 1 313 0 709 279 107 38 chr13 20572250 20572902 -99171996 + L1ME4a LINE L1 5278 5974 -147 280 290 6 0 chr13 20573590 20573675 -99171223 - MIR3 SINE MIR -22 186 100 189 255 0 39 chr13 20573760 20573811 -99171087 - L3 LINE CR1 -603 974 926 601 347 73 29 chr13 20574804 20575282 -99169616 + L2 LINE L2 2808 3306 -7 1337 189 184 19 chr13 20576077 20576500 -99168398 + LTR54B LTR ERV1 2 494 -4 23 54 0 0 chr13 20576620 20576657 -99168241 + AT_rich Low_complexity Low_complexity 1 37 0 306 330 78 35 chr13 20577133 20577415 -99167483 - L1ME LINE L1 -502 6117 5824 244 258 48 0 chr13 20577613 20577675 -99167223 - MIR SINE MIR -67 141 77 222 200 0 0 chr13 20578899 20578939 -99165959 + CT-rich Low_complexity Low_complexity 2 41 0 587 226 43 24 chr13 20579094 20579258 -99165640 - MER96B DNA MER1_type? -238 179 13 2622 36 0 0 chr13 20580298 20580599 -99164299 - AluY SINE Alu -10 301 1 240 216 284 11 chr13 20582514 20582602 -99162296 + L2 LINE L2 3199 3310 -3 23 0 0 0 chr13 20582621 20582644 -99162254 + AT_rich Low_complexity Low_complexity 1 23 0 222 319 78 35 chr13 20584951 20585067 -99159831 - MIR SINE MIR -70 138 18 290 136 0 0 chr13 20586866 20586910 -99157988 + L1PBa LINE L1 2443 2486 -4377 705 146 88 0 chr13 20586910 20587047 -99157851 + L1PBa LINE L1 2444 2592 -4271 1221 213 28 19 chr13 20587113 20587474 -99157424 + L1PB3 LINE L1 5040 5403 -743 3471 142 30 5 chr13 20587483 20588073 -99156825 + L1PB3 LINE L1 5543 6147 -7 35 54 0 0 chr13 20588369 20588425 -99156473 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr13 20588465 20588497 -99156401 + AT_rich Low_complexity Low_complexity 1 32 0 764 365 90 9 chr13 20588688 20589234 -99155664 + L2 LINE L2 1763 2352 -962 437 240 48 32 chr13 20589441 20589566 -99155332 - L2 LINE L2 0 3313 3187 504 238 0 10 chr13 20589638 20589739 -99155159 - AluJb SINE Alu -17 295 196 635 240 0 7 chr13 20589758 20589908 -99154990 - L1ME LINE L1 -1160 5484 5336 3689 236 86 42 chr13 20589917 20591635 -99153263 - L1ME LINE L1 -3850 2794 1001 815 263 48 12 chr13 20591851 20592102 -99152796 - L1ME LINE L1 -6281 261 2 1664 219 51 22 chr13 20592111 20592618 -99152280 - L1M4 LINE L1 -1314 4832 4311 403 325 70 37 chr13 20592625 20592896 -99152002 + L2 LINE L2 2698 2977 -337 2624 226 42 8 chr13 20592909 20593501 -99151397 + L1MC1 LINE L1 4 615 -5811 290 275 14 0 chr13 20593504 20593573 -99151325 + L1MC1 LINE L1 573 642 -5784 6951 240 49 7 chr13 20593574 20595681 -99149217 + L1MC1 LINE L1 3147 5342 -1084 6179 133 39 18 chr13 20595693 20596766 -99148132 + L1MC1 LINE L1 5518 6612 -1 30 45 0 0 chr13 20596981 20597025 -99147873 + AT_rich Low_complexity Low_complexity 1 44 0 331 138 0 94 chr13 20597026 20597207 -99147691 + (TAA)n Simple_repeat Simple_repeat 3 166 0 323 278 11 0 chr13 20597207 20597297 -99147601 - L1MC4 LINE L1 -1338 6704 6614 271 271 0 0 chr13 20597298 20597383 -99147515 + (TA)n Simple_repeat Simple_repeat 1 85 0 260 347 68 16 chr13 20597531 20597721 -99147177 - MIR SINE MIR -61 201 2 391 370 74 31 chr13 20597832 20598346 -99146552 - L2 LINE L2 -2606 708 173 2105 118 7 0 chr13 20598586 20598873 -99146025 + AluSx SINE Alu 1 289 -23 245 377 85 41 chr13 20601168 20601723 -99143175 + L2 LINE L2 212 790 -2524 798 276 5 5 chr13 20602363 20602548 -99142350 - MIR SINE MIR -20 242 58 865 249 13 27 chr13 20602912 20603137 -99141761 + MIR SINE MIR 41 262 0 206 279 0 0 chr13 20603164 20603207 -99141691 + L3 LINE CR1 731 773 -804 209 343 168 22 chr13 20605698 20605835 -99139063 - L2 LINE L2 -605 2709 2553 6171 87 14 2 chr13 20607435 20608279 -99136619 - L1PA10 LINE L1 -11 6157 5304 186 259 190 9 chr13 20608474 20608590 -99136308 - L2 LINE L2 -100 3213 3077 21 36 0 0 chr13 20609486 20609514 -99135384 + AT_rich Low_complexity Low_complexity 1 28 0 215 245 0 0 chr13 20610051 20610104 -99134794 + T-rich Low_complexity Low_complexity 1 53 0 927 150 40 111 chr13 20610148 20610374 -99134524 - MLT1B LTR MaLR 0 390 181 392 182 0 26 chr13 20610378 20610455 -99134443 - MLT1B LTR MaLR -315 75 1 1199 204 65 46 chr13 20610860 20611256 -99133642 + MER57A LTR ERV1 19 403 0 26 0 0 0 chr13 20611269 20611295 -99133603 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr13 20611330 20611379 -99133519 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr13 20612205 20612227 -99132671 + AT_rich Low_complexity Low_complexity 1 22 0 248 188 31 47 chr13 20613142 20613206 -99131692 + L1MEc LINE L1 1924 1986 -4410 301 278 87 87 chr13 20613315 20613567 -99131331 + L1MEc LINE L1 2120 2371 -4025 709 271 92 0 chr13 20613810 20614039 -99130859 + MER46C DNA MER2_type 10 259 -79 618 78 29 0 chr13 20614157 20614259 -99130639 + (GA)n Simple_repeat Simple_repeat 2 106 0 230 285 89 16 chr13 20614393 20614516 -99130382 + L1MEc LINE L1 2713 2844 -3371 829 20 20 0 chr13 20614521 20614622 -99130276 + L1PA4 LINE L1 6052 6154 -1 2341 52 3 14 chr13 20615048 20615337 -99129561 - AluY SINE Alu -11 300 15 212 119 0 24 chr13 20616129 20616171 -99128727 + (GA)n Simple_repeat Simple_repeat 2 42 0 302 237 185 52 chr13 20616576 20616711 -99128187 + MIR SINE MIR 36 188 -74 2394 82 0 3 chr13 20616761 20617065 -99127833 - AluSp SINE Alu -10 303 1 22 0 0 0 chr13 20617166 20617188 -99127710 + AT_rich Low_complexity Low_complexity 1 22 0 773 144 44 62 chr13 20617188 20617348 -99127550 - MER4D LTR ERV1 -25 878 722 * 1332 87 61 6 chr13 20617323 20617565 -99127333 - MER4D LTR ERV1 -311 592 296 274 303 13 0 chr13 20617741 20617817 -99127081 - MLT1I LTR MaLR -248 161 85 219 269 155 87 chr13 20618192 20618229 -99126669 + MIR SINE MIR 29 62 -200 1732 146 62 4 chr13 20618229 20618504 -99126394 - AluJb SINE Alu -20 292 2 219 269 155 87 chr13 20618504 20618685 -99126213 + MIR SINE MIR 62 262 0 271 241 51 0 chr13 20618905 20618984 -99125914 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1446 263 78 36 chr13 20619733 20620365 -99124533 - L1ME3A LINE L1 -55 6509 5852 * 2916 273 108 51 chr13 20620357 20621522 -99123376 - L1MDa LINE L1 -1423 5117 4020 2377 132 26 33 chr13 20621522 20621586 -99123312 - L1MA9 LINE L1 0 6312 6249 2444 60 0 25 chr13 20621586 20621905 -99122993 - AluY SINE Alu 0 311 1 2377 132 26 33 chr13 20621905 20622295 -99122603 - L1MA9 LINE L1 -63 6249 5861 2916 273 108 51 chr13 20622295 20622669 -99122229 - L1MDa LINE L1 -2520 4020 3669 2293 97 0 0 chr13 20622669 20622967 -99121931 - AluSx SINE Alu -14 298 1 2916 273 108 51 chr13 20622967 20625024 -99119874 - L1MDa LINE L1 -2871 3669 1297 547 122 0 0 chr13 20625639 20625721 -99119177 + L1MC1 LINE L1 6247 6328 -5 1377 53 72 91 chr13 20626561 20626770 -99118128 + AluSg SINE Alu 1 205 -105 1856 80 0 28 chr13 20626771 20627041 -99117857 + AluY SINE Alu 42 304 0 3137 183 51 37 chr13 20627119 20627868 -99117030 + L1MC3 LINE L1 6935 7693 -92 236 203 17 0 chr13 20628009 20628068 -99116830 - L1MC3 LINE L1 -151 7634 7575 292 181 24 48 chr13 20628069 20628152 -99116746 + L1MC3 LINE L1 7705 7785 0 21 0 0 0 chr13 20628311 20628332 -99116566 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 20628669 20628697 -99116201 + AT_rich Low_complexity Low_complexity 1 28 0 212 343 0 14 chr13 20630815 20630888 -99114010 - L2 LINE L2 0 3313 3242 4730 206 27 39 chr13 20631305 20632463 -99112435 + L1MC3 LINE L1 6641 7784 -1 342 0 0 0 chr13 20634173 20634211 -99110687 + (TG)n Simple_repeat Simple_repeat 2 39 0 3429 188 160 12 chr13 20635138 20635915 -99108983 - THE1C-int LTR MaLR -757 894 3 1678 140 50 20 chr13 20635917 20636217 -99108681 - THE1C LTR MaLR 0 375 67 687 172 9 0 chr13 20636745 20636861 -99108037 + MLT1A1 LTR MaLR 249 365 0 224 320 8 57 chr13 20638736 20638858 -99106040 + L2 LINE L2 3155 3270 -43 23 0 0 0 chr13 20638866 20638889 -99106009 + AT_rich Low_complexity Low_complexity 1 23 0 738 171 0 0 chr13 20638892 20639021 -99105877 - L1MA5 LINE L1 -3 6297 6169 248 333 0 0 chr13 20639182 20639254 -99105644 + (TCCA)n Simple_repeat Simple_repeat 2 73 0 276 100 0 0 chr13 20640188 20640228 -99104670 + (TG)n Simple_repeat Simple_repeat 1 40 0 430 274 51 57 chr13 20640246 20640421 -99104477 + L3 LINE CR1 923 1096 -481 284 384 18 0 chr13 20640427 20640539 -99104359 + L3 LINE CR1 1461 1574 -3 296 334 26 0 chr13 20640576 20640690 -99104208 - MIR SINE MIR -64 144 19 187 346 141 5 chr13 20640690 20640875 -99104023 + L3 LINE CR1 1098 1307 -270 236 275 119 0 chr13 20641022 20641131 -99103767 + MLT1J LTR MaLR 32 153 -358 346 277 42 50 chr13 20641449 20641709 -99103189 + HAL1 LINE L1 2246 2503 -4 1908 94 12 101 chr13 20643118 20643446 -99101452 - AluSq SINE Alu -14 299 1 25 0 0 0 chr13 20643448 20643473 -99101425 + AT_rich Low_complexity Low_complexity 1 25 0 231 292 45 0 chr13 20844734 20844823 -98900075 + MER112 DNA MER1_type 19 111 -149 291 140 0 0 chr13 20844832 20844882 -98900016 + (T)n Simple_repeat Simple_repeat 1 50 0 1652 94 8 0 chr13 20845546 20845780 -98899118 - L1PA11 LINE L1 0 6174 5939 530 213 7 7 chr13 20845917 20846053 -98898845 + MER3 DNA MER1_type 34 122 -87 1216 206 90 27 chr13 20846061 20846311 -98898587 + MER3 DNA MER1_type 2234 2516 -108 2265 120 0 18 chr13 20846311 20846652 -98898246 - MER1B DNA MER1_type 0 337 3 1216 206 90 27 chr13 20846652 20846769 -98898129 + MER3 DNA MER1_type 2516 2624 0 394 281 61 0 chr13 20846905 20847048 -98897850 - MIR SINE MIR -67 141 8 296 269 21 21 chr13 20847326 20847419 -98897479 - MIR SINE MIR 0 262 170 202 214 60 60 chr13 20847510 20847594 -98897304 - MIR SINE MIR -102 106 23 544 232 8 24 chr13 20848471 20848596 -98896302 + MIR SINE MIR 32 154 -108 181 352 45 50 chr13 20848842 20849021 -98895877 + L2 LINE L2 2576 2753 -561 4468 236 34 38 chr13 20849138 20849917 -98894981 + L1MC1 LINE L1 3193 3965 -2181 1222 222 12 102 chr13 20849917 20850318 -98894580 + MLT1A1 LTR MaLR 1 365 0 4468 236 34 38 chr13 20850318 20850950 -98893948 + L1MC1 LINE L1 3965 4598 -1548 1514 78 4 91 chr13 20851050 20851292 -98893606 - MLT2A2 LTR ERVL -232 221 1 2111 207 56 14 chr13 20851297 20851742 -98893156 - MER88 LTR ERVL 0 464 1 5341 181 43 38 chr13 20851742 20852936 -98891962 + L1MC1 LINE L1 4651 5840 -493 2009 95 57 3 chr13 20852936 20853219 -98891679 + AluSq SINE Alu 1 298 -15 5341 181 43 38 chr13 20853219 20853715 -98891183 + L1MC1 LINE L1 5840 6332 -1 366 309 98 66 chr13 20853747 20854216 -98890682 + L1ME4a LINE L1 2506 2989 -3157 25 0 0 0 chr13 20854229 20854254 -98890644 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr13 20854616 20854645 -98890253 + AT_rich Low_complexity Low_complexity 1 29 0 327 303 20 7 chr13 20854870 20855056 -98889842 + L1ME4a LINE L1 5282 5468 -723 302 308 121 57 chr13 20855073 20855512 -98889386 + L1ME4a LINE L1 5491 5957 -164 23 0 0 0 chr13 20855535 20855558 -98889340 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr13 20855662 20855689 -98889209 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr13 20855831 20855861 -98889037 + AT_rich Low_complexity Low_complexity 1 30 0 591 280 0 36 chr13 20855900 20856068 -98888830 - MIR SINE MIR 0 262 101 2324 61 3 26 chr13 20856165 20856478 -98888420 + AluY SINE Alu 1 306 -5 2020 40 24 12 chr13 20856478 20856727 -98888171 + AluY SINE Alu 50 302 -9 2559 51 3 3 chr13 20856737 20857048 -98887850 + AluY SINE Alu 1 311 0 2487 213 114 20 chr13 20857612 20858373 -98886525 - L1ME2 LINE L1 -15 6149 5317 739 234 43 59 chr13 20858355 20858727 -98886171 - L1ME2 LINE L1 -1698 4448 4083 * 288 238 60 12 chr13 20858760 20858844 -98886054 - MLT1C LTR MaLR -379 88 1 633 173 30 23 chr13 20858844 20858977 -98885921 - MLT1C-int LTR MaLR 0 1371 1238 245 172 35 52 chr13 20858985 20859043 -98885855 - MLT1C-int LTR MaLR -110 1625 1569 3320 255 67 36 chr13 20859201 20860345 -98884553 - MLT1C-int LTR MaLR -152 1219 40 435 202 0 0 chr13 20860875 20860969 -98883929 + (CATATA)n Simple_repeat Simple_repeat 5 98 0 384 280 251 6 chr13 20863499 20863674 -98881224 + MIR SINE MIR 34 251 -11 207 0 0 0 chr13 20863908 20863931 -98880967 + (TG)n Simple_repeat Simple_repeat 2 24 0 856 217 73 42 chr13 20864759 20865045 -98879853 + L1MA9 LINE L1 5889 6183 -108 2273 144 5 52 chr13 20866803 20867207 -98877691 + MLT1B LTR MaLR 1 385 -5 3494 129 79 66 chr13 20867908 20868676 -98876222 + LTR1 LTR ERV1 8 785 0 517 202 16 47 chr13 20868676 20868805 -98876093 + HUERS-P2 LTR ERV1 1 125 -2963 653 47 0 0 chr13 20868824 20868910 -98875988 + AluY SINE Alu 216 301 -10 223 315 92 23 chr13 20869984 20870114 -98874784 + MIR SINE MIR 14 152 -110 625 295 211 21 chr13 20870147 20870622 -98874276 + MER45C DNA AcHobo 38 602 -351 536 211 108 108 chr13 20870672 20870910 -98873988 + MER45C DNA AcHobo 719 953 0 183 309 0 0 chr13 20871009 20871051 -98873847 + L2 LINE L2 3142 3183 -89 22 0 0 0 chr13 20871493 20871515 -98873383 + AT_rich Low_complexity Low_complexity 1 22 0 2112 240 118 16 chr13 20872711 20873468 -98871430 - L1MC4a LINE L1 0 7808 6975 291 267 92 17 chr13 20873756 20873876 -98871022 - MIR SINE MIR -86 176 48 280 299 17 8 chr13 20875118 20875235 -98869663 + (TA)n Simple_repeat Simple_repeat 2 119 0 276 124 52 10 chr13 20875258 20875355 -98869543 + (TA)n Simple_repeat Simple_repeat 2 102 0 27 0 0 0 chr13 20875367 20875394 -98869504 + AT_rich Low_complexity Low_complexity 1 27 0 27482 94 9 12 chr13 20876296 20881271 -98863627 + L1PA7 LINE L1 1196 6152 -2 208 338 25 0 chr13 20881715 20881795 -98863103 + MIR SINE MIR 81 162 -100 1348 202 125 38 chr13 20882420 20882863 -98862035 - MER66A LTR ERV1 0 601 100 318 341 34 52 chr13 20883016 20883283 -98861615 - L2 LINE L2 -19 3294 3033 492 268 258 5 chr13 20883412 20883621 -98861277 - MIR SINE MIR 0 262 1 2275 95 33 10 chr13 20883961 20884266 -98860632 + AluSx SINE Alu 1 312 0 812 273 23 23 chr13 20884311 20884619 -98860279 - HAL1 LINE L1 -137 2370 2063 327 149 0 0 chr13 20886084 20886158 -98858740 + (TA)n Simple_repeat Simple_repeat 2 75 0 24 53 0 0 chr13 20886580 20886618 -98858280 + AT_rich Low_complexity Low_complexity 1 38 0 376 218 40 10 chr13 20886757 20886849 -98858049 + L1MA9 LINE L1 6125 6222 -90 471 63 0 0 chr13 20886849 20886912 -98857986 + (TA)n Simple_repeat Simple_repeat 2 64 0 216 274 0 0 chr13 20887108 20887159 -98857739 + (TATG)n Simple_repeat Simple_repeat 1 51 0 850 210 19 39 chr13 20887467 20887724 -98857174 + MER96B DNA MER1_type? 164 415 -2 3669 243 68 24 chr13 20888095 20889939 -98854959 + L1MCb LINE L1 3 2124 -4440 2734 239 51 40 chr13 20889972 20890227 -98854671 + L1MCb LINE L1 2205 2456 -4108 2200 116 0 3 chr13 20890227 20890530 -98854368 + AluSq SINE Alu 1 302 -11 2734 239 51 40 chr13 20890530 20891490 -98853408 + L1MCb LINE L1 2456 3429 -3135 574 128 77 0 chr13 20891490 20891607 -98853291 + L1MA9 LINE L1 6177 6302 -10 2734 239 51 40 chr13 20891607 20891747 -98853151 + L1MCb LINE L1 3429 3566 -2998 969 243 18 74 chr13 20891763 20892071 -98852827 + L1MCb LINE L1 4644 4968 -1596 2488 56 0 3 chr13 20892071 20892373 -98852525 + AluY SINE Alu 1 301 -10 969 243 18 74 chr13 20892373 20892684 -98852214 + L1MCb LINE L1 4968 5332 -1232 2202 58 10 48 chr13 20893227 20893538 -98851360 - AluY SINE Alu -12 299 1 233 204 0 0 chr13 20894415 20894464 -98850434 + L1MB4 LINE L1 6126 6174 -6 297 231 56 37 chr13 20894593 20894701 -98850197 + MIR3 SINE MIR 99 208 0 332 385 65 7 chr13 20895063 20895338 -98849560 + Tigger8 DNA MER2_type 354 644 -22 1899 134 28 3 chr13 20895423 20895707 -98849191 + AluSx SINE Alu 1 291 -21 3773 169 29 69 chr13 20897116 20897299 -98847599 - L1MA7 LINE L1 0 6291 6102 283 71 0 24 chr13 20897299 20897335 -98847563 + AluY SINE Alu 1 36 -261 1510 74 5 0 chr13 20897335 20897525 -98847373 + AluY SINE Alu 112 302 -9 3773 169 29 69 chr13 20897530 20898177 -98846721 - L1MA7 LINE L1 -189 6102 5455 * 5590 159 22 5 chr13 20898166 20899234 -98845664 + L1 LINE L1 3783 4869 -1277 2118 43 0 0 chr13 20899646 20899900 -98844998 + L1PA3 LINE L1 5899 6152 -3 361 305 0 30 chr13 20900670 20900801 -98844097 + MIR SINE MIR 57 183 -79 328 290 28 9 chr13 20900885 20900992 -98843906 - MIR SINE MIR -46 216 108 22 21 0 62 chr13 20902445 20902466 -98842432 + AT_rich Low_complexity Low_complexity 1 22 -23 1636 162 49 18 chr13 20902466 20902750 -98842148 - AluJb SINE Alu -19 293 1 22 21 0 62 chr13 20902750 20902776 -98842122 + AT_rich Low_complexity Low_complexity 22 45 0 2229 57 18 0 chr13 20902786 20903068 -98841830 - AluY SINE Alu -24 287 1 2591 52 0 0 chr13 20903418 20903726 -98841172 + AluY SINE Alu 1 308 -3 542 281 77 73 chr13 20904822 20905096 -98839802 + MLT1J LTR MaLR 52 326 -185 235 271 0 0 chr13 20905189 20905259 -98839639 - L1MC4 LINE L1 -1324 6718 6649 28 48 0 0 chr13 20905259 20905301 -98839597 + AT_rich Low_complexity Low_complexity 1 42 0 668 318 34 0 chr13 20905529 20905765 -98839133 + MIR SINE MIR 19 262 0 234 0 0 0 chr13 20905794 20905820 -98839078 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1432 223 64 22 chr13 20906620 20907028 -98837870 + MLT1C LTR MaLR 42 466 -1 3706 256 59 34 chr13 20907029 20908218 -98836680 + MLT1C-int LTR MaLR 1 1219 -152 245 172 35 52 chr13 20908376 20908434 -98836464 + MLT1C-int LTR MaLR 1569 1625 -110 633 173 30 23 chr13 20908442 20908575 -98836323 + MLT1C-int LTR MaLR 1238 1371 0 288 238 60 12 chr13 20908575 20908659 -98836239 + MLT1C LTR MaLR 1 88 -379 739 234 43 59 chr13 20908692 20909064 -98835834 + L1ME2 LINE L1 4083 4448 -1698 * 2487 213 114 20 chr13 20909046 20909807 -98835091 + L1ME2 LINE L1 5317 6149 -15 2527 55 3 3 chr13 20910371 20910681 -98834217 - AluY SINE Alu -1 310 1 2203 45 59 10 chr13 20910691 20910979 -98833919 - AluY SINE Alu -9 302 1 292 200 27 13 chr13 20911075 20911150 -98833748 + L1M LINE L1 5322 5397 -903 2438 140 30 21 chr13 20912428 20912856 -98832042 + Tigger2a DNA MER2_type 1 432 -2 808 163 75 27 chr13 20912904 20913051 -98831847 + FRAM SINE Alu 4 157 -9 30 0 0 0 chr13 20915182 20915212 -98829686 + AT_rich Low_complexity Low_complexity 1 30 0 2522 50 0 0 chr13 20915469 20915772 -98829126 - AluY SINE Alu -8 303 1 21 57 0 0 chr13 20915969 20916004 -98828894 + AT_rich Low_complexity Low_complexity 1 35 0 312 91 0 0 chr13 20916078 20916122 -98828776 + (CA)n Simple_repeat Simple_repeat 2 45 0 216 0 0 0 chr13 20917141 20917165 -98827733 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1049 33 8 0 chr13 20917184 20917306 -98827592 - AluY SINE Alu -188 123 1 712 68 4 2 chr13 20917527 20917777 -98827121 + AluY SINE Alu 1 307 -4 1725 229 106 8 chr13 20917948 20918468 -98826430 - MER90 LTR ERV1 -4 571 1 1972 129 0 10 chr13 20919379 20919673 -98825225 - AluSg SINE Alu -19 291 1 643 89 68 0 chr13 20920068 20920402 -98824496 + (TA)n Simple_repeat Simple_repeat 1 356 0 25 0 0 0 chr13 20920410 20920435 -98824463 + AT_rich Low_complexity Low_complexity 1 25 0 321 207 0 0 chr13 20920572 20920659 -98824239 + (CCA)n Simple_repeat Simple_repeat 3 89 0 564 241 0 0 chr13 20920680 20920854 -98824044 + (CCA)n Simple_repeat Simple_repeat 3 176 0 639 178 18 12 chr13 20920890 20921059 -98823839 + (CACCAT)n Simple_repeat Simple_repeat 1 170 0 995 298 108 34 chr13 20921609 20922217 -98822681 - MER115 DNA AcHobo -9 684 1 236 250 0 0 chr13 20922215 20922267 -98822631 + LTR30 LTR ERV1 1 52 -670 * 1626 109 122 170 chr13 20922304 20922663 -98822235 + LTR12 LTR ERV1 55 389 -325 1940 144 0 3 chr13 20922663 20922961 -98821937 + AluY SINE Alu 1 297 -14 1626 109 122 170 chr13 20922961 20923061 -98821837 + LTR12 LTR ERV1 389 492 -222 26 30 0 0 chr13 20923164 20923197 -98821701 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr13 20923246 20923277 -98821621 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr13 20923591 20923631 -98821267 + AT_rich Low_complexity Low_complexity 1 40 0 2399 57 7 13 chr13 20924658 20924957 -98819941 + AluY SINE Alu 1 297 -14 6761 53 21 0 chr13 20925159 20925372 -98819526 - L1PA7 LINE L1 -3 6151 5944 2034 68 0 19 chr13 20925372 20925636 -98819262 - AluY SINE Alu -15 296 38 6761 53 21 0 chr13 20925636 20926482 -98818416 - L1PA7 LINE L1 -210 5944 5107 687 39 39 10 chr13 20926482 20926584 -98818314 + L1P LINE L1 4617 4721 -1425 * 2285 239 81 49 chr13 20926579 20928097 -98816801 + L1ME2 LINE L1 4214 5793 -371 726 146 37 7 chr13 20928112 20928258 -98816640 - L1MD3 LINE L1 0 7995 7632 994 219 259 77 chr13 20928261 20928791 -98816107 + MER51A LTR ERV1 1 626 -8 2344 188 68 10 chr13 20928816 20929316 -98815582 - L1MC3 LINE L1 -157 7628 7100 1081 212 92 15 chr13 20929369 20929694 -98815204 + L1ME2 LINE L1 5807 6156 -8 186 340 170 0 chr13 20930966 20931066 -98813832 - L2 LINE L2 -2 3270 3154 309 135 0 0 chr13 20932040 20932092 -98812806 + (CA)n Simple_repeat Simple_repeat 2 53 0 2413 69 0 0 chr13 20932702 20933008 -98811890 + AluY SINE Alu 1 306 -5 1597 259 25 66 chr13 20933008 20933764 -98811134 - L1ME3A LINE L1 -192 6238 5514 373 335 101 8 chr13 20933777 20934025 -98810873 - L1ME3A LINE L1 -905 5501 5231 307 284 142 24 chr13 20934228 20934397 -98810501 - L1ME3A LINE L1 -1313 5093 4905 649 195 84 39 chr13 20934405 20934559 -98810339 + FRAM SINE Alu 1 158 -18 228 236 31 87 chr13 20934562 20934689 -98810209 - L1ME3A LINE L1 -1511 4895 4776 23 54 0 0 chr13 20934760 20934797 -98810101 + AT_rich Low_complexity Low_complexity 1 37 0 373 201 102 76 chr13 20934885 20935222 -98809676 - L1MEc LINE L1 -3795 2611 2322 2542 151 26 16 chr13 20935236 20935740 -98809158 - L1MA8 LINE L1 0 6291 5783 21 36 0 0 chr13 20935894 20935922 -98808976 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr13 20936048 20936091 -98808807 + AT_rich Low_complexity Low_complexity 1 43 0 227 311 24 12 chr13 20936252 20936419 -98808479 - L1MEc LINE L1 -5071 1338 1170 205 135 39 0 chr13 20937775 20937827 -98807071 + (CGG)n Simple_repeat Simple_repeat 2 55 0 454 385 42 4 chr13 20938951 20939211 -98805687 + L3 LINE CR1 930 1199 -378 211 296 102 71 chr13 20939417 20939515 -98805383 + L3 LINE CR1 1472 1572 -5 1512 226 64 0 chr13 20939761 20940120 -98804778 - MLT1C-int LTR MaLR -989 382 1 1813 191 89 19 chr13 20940124 20940549 -98804349 - MLT1C LTR MaLR -7 460 6 576 248 47 0 chr13 20941001 20941150 -98803748 + MIR SINE MIR 81 236 -26 303 93 0 0 chr13 20941721 20941764 -98803134 + (TG)n Simple_repeat Simple_repeat 2 44 0 2844 25 0 0 chr13 20942626 20942966 -98801932 - AluYb8 SINE Alu 0 340 1 2252 130 24 3 chr13 20943396 20943774 -98801124 + L1PB3 LINE L1 5588 5973 -181 285 71 14 86 chr13 20943813 20943883 -98801015 + L1PB3 LINE L1 5956 6020 -134 2452 84 0 0 chr13 20947499 20947810 -98797088 + AluY SINE Alu 1 311 0 381 337 90 31 chr13 20948068 20948559 -98796339 - L2 LINE L2 -671 2643 2072 207 0 0 0 chr13 20949631 20949654 -98795244 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2221 88 7 0 chr13 20951207 20951501 -98793397 + AluY SINE Alu 1 296 -15 2549 51 0 3 chr13 20954480 20954792 -98790106 - AluY SINE Alu 0 311 1 1654 196 3 3 chr13 20955678 20955984 -98788914 + AluJo SINE Alu 1 306 -6 2994 209 22 57 chr13 20955985 20956490 -98788408 - L1MD1 LINE L1 -59 6183 5716 1785 170 0 21 chr13 20956490 20956798 -98788100 + AluJo SINE Alu 1 302 0 2994 209 22 57 chr13 20956798 20957141 -98787757 - L1MD1 LINE L1 -526 5716 5363 372 104 26 26 chr13 20957154 20957231 -98787667 + CT-rich Low_complexity Low_complexity 3 79 0 867 212 12 0 chr13 20957239 20957409 -98787489 - FRAM SINE Alu -4 172 1 1680 239 128 7 chr13 20957414 20958013 -98786885 - L1MD1 LINE L1 -821 5325 4654 886 177 0 6 chr13 20958011 20958186 -98786712 + L1MC/D LINE L1 5446 5619 -623 * 934 353 85 36 chr13 20958732 20960086 -98784812 + L2 LINE L2 748 2167 -1147 324 250 0 38 chr13 20960169 20960249 -98784649 + MER45A DNA AcHobo 1 77 -101 1502 135 23 0 chr13 20960302 20960562 -98784336 - L1MA2 LINE L1 0 6304 6039 362 147 29 15 chr13 20960563 20960631 -98784267 + MER45A DNA AcHobo 100 168 -10 197 400 27 0 chr13 20960667 20960777 -98784121 + L2 LINE L2 2565 2677 -637 242 233 17 0 chr13 20960986 20961056 -98783842 - L1M1 LINE L1 -551 5752 5682 201 147 0 0 chr13 20961058 20961092 -98783806 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 285 283 67 2 chr13 20961125 20961368 -98783530 - L1ME LINE L1 -484 5637 5375 608 283 124 75 chr13 20961497 20962371 -98782527 - L1ME LINE L1 -873 5273 4358 308 289 59 17 chr13 20962569 20962858 -98782040 - L1ME LINE L1 -2166 3980 3682 266 195 79 0 chr13 20963337 20963501 -98781397 + (TA)n Simple_repeat Simple_repeat 2 178 0 479 154 10 58 chr13 20963571 20963675 -98781223 - AluJb SINE Alu -13 299 201 * 513 176 0 0 chr13 20963668 20963753 -98781145 - FRAM SINE Alu -73 103 19 607 210 11 11 chr13 20964595 20964771 -98780127 + (ATGGTG)n Simple_repeat Simple_repeat 4 179 0 280 339 51 26 chr13 20965209 20965404 -98779494 - L2 LINE L2 -1 3312 3113 318 106 0 0 chr13 20965481 20965528 -98779370 + (TA)n Simple_repeat Simple_repeat 1 47 0 297 75 0 0 chr13 20965521 20965561 -98779337 + (CA)n Simple_repeat Simple_repeat 2 41 0 * 3092 63 0 0 chr13 20965561 20965959 -98778939 - MLT2A1 LTR ERVL -46 398 1 2132 108 3 7 chr13 20966967 20967264 -98777634 - AluSg SINE Alu -14 296 1 234 0 0 0 chr13 20968743 20968769 -98776129 + (CA)n Simple_repeat Simple_repeat 2 27 0 2352 87 3 10 chr13 20968797 20969109 -98775789 - AluY SINE Alu -1 310 1 332 238 109 30 chr13 20969430 20969531 -98775367 + MER110-int LTR ERV1 2748 2856 -1791 324 157 54 0 chr13 20969742 20969908 -98774990 + (TA)n Simple_repeat Simple_repeat 1 175 0 2230 106 0 3 chr13 20970153 20970446 -98774452 - AluY SINE Alu -19 292 1 2303 93 0 3 chr13 20970564 20970865 -98774033 - AluY SINE Alu -11 300 1 23 0 0 0 chr13 20970957 20970980 -98773918 + AT_rich Low_complexity Low_complexity 1 23 0 559 272 146 7 chr13 20970981 20971215 -98773683 - MIR SINE MIR -21 241 3 778 161 13 7 chr13 20971248 20971397 -98773501 + MER58B DNA MER1_type 177 326 -15 2314 50 7 27 chr13 20971733 20972033 -98772865 + AluY SINE Alu 1 294 -17 199 41 102 0 chr13 20972237 20972286 -98772612 + (CCTG)n Simple_repeat Simple_repeat 1 54 0 2467 66 0 0 chr13 20972458 20972760 -98772138 + AluY SINE Alu 1 302 -9 315 0 0 0 chr13 20973934 20973969 -98770929 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 26 0 26 chr13 20974075 20974087 -98770811 + AT_rich Low_complexity Low_complexity 1 12 -26 4811 90 20 23 chr13 20974087 20974443 -98770455 + L1PB1 LINE L1 5417 5772 -379 387 0 0 0 chr13 20974443 20974486 -98770412 + (CA)n Simple_repeat Simple_repeat 2 44 0 4811 90 20 23 chr13 20974486 20974504 -98770394 + L1PB1 LINE L1 5772 5789 -362 1635 100 4 4 chr13 20974504 20974733 -98770165 + AluY SINE Alu 67 295 -16 4811 90 20 23 chr13 20974733 20974908 -98769990 + L1PB1 LINE L1 5789 5963 -188 3666 107 99 31 chr13 20974908 20975501 -98769397 - LTR12 LTR ERV1 0 688 46 2395 76 3 0 chr13 20975501 20975803 -98769095 + AluY SINE Alu 1 303 -8 3666 107 99 31 chr13 20975803 20975853 -98769045 - LTR12 LTR ERV1 -642 46 1 4811 90 20 23 chr13 20975853 20976036 -98768862 + L1PB1 LINE L1 5963 6149 -2 21 26 0 26 chr13 20976036 20976062 -98768836 + AT_rich Low_complexity Low_complexity 12 38 0 23 54 0 0 chr13 20976346 20976383 -98768515 + AT_rich Low_complexity Low_complexity 1 37 0 1786 139 7 53 chr13 20977818 20978120 -98766778 + AluSx SINE Alu 1 288 -24 287 299 58 73 chr13 20978673 20978810 -98766088 + L2 LINE L2 3138 3272 0 1005 149 56 5 chr13 20979861 20980075 -98764823 + L1MC3 LINE L1 7470 7694 -91 * 1723 164 138 61 chr13 20980070 20980268 -98764630 + L1MA6 LINE L1 5754 5935 -365 1800 155 14 0 chr13 20980268 20980578 -98764320 + AluSx SINE Alu 1 314 0 1723 164 138 61 chr13 20980578 20980882 -98764016 + L1MA6 LINE L1 5935 6298 -2 554 138 21 0 chr13 20980879 20980973 -98763925 + L1MC3 LINE L1 7677 7772 -13 * 23 0 0 0 chr13 20982507 20982530 -98762368 + AT_rich Low_complexity Low_complexity 1 23 0 269 334 141 10 chr13 20983770 20983979 -98760919 + MIR SINE MIR 18 248 -14 1673 167 37 14 chr13 20984200 20984554 -98760344 + L1MA4 LINE L1 5939 6300 0 924 269 48 85 chr13 20984737 20985221 -98759677 - MLT1K LTR MaLR 0 588 123 220 342 89 0 chr13 20985992 20986071 -98758827 + MIR SINE MIR 26 111 -97 4569 167 26 2 chr13 20986588 20987698 -98757200 + L1MA4A LINE L1 4431 5564 -736 3186 141 94 0 chr13 20987699 20988304 -98756594 + L1MA4A LINE L1 5639 6300 -3 200 211 18 18 chr13 20988411 20988468 -98756430 + (TG)n Simple_repeat Simple_repeat 2 58 0 3924 137 31 3 chr13 20988512 20989211 -98755687 + L1MA6 LINE L1 5582 6300 0 607 271 49 31 chr13 20989285 20989510 -98755388 + MIR SINE MIR 34 262 0 2133 166 64 5 chr13 20989607 20990011 -98754887 + MSTA LTR MaLR 1 428 0 279 183 28 14 chr13 20990099 20990170 -98754728 - Tigger5 DNA MER2_type -1 2322 2251 2458 55 13 0 chr13 20990394 20990701 -98754197 + AluY SINE Alu 1 311 0 21 36 0 0 chr13 20990701 20990729 -98754169 + AT_rich Low_complexity Low_complexity 1 28 0 244 61 0 41 chr13 20991100 20991149 -98753749 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3043 121 116 82 chr13 20991264 20992023 -98752875 - LTR1 LTR ERV1 0 785 1 23 0 0 0 chr13 20992288 20992311 -98752587 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr13 20992707 20992728 -98752170 + (TA)n Simple_repeat Simple_repeat 2 22 0 2326 96 3 16 chr13 20992731 20993045 -98751853 - AluY SINE Alu -1 310 1 1996 111 11 0 chr13 20993337 20993608 -98751290 - AluSp SINE Alu -16 297 24 2532 118 8 0 chr13 20995296 20995668 -98749230 + THE1C LTR MaLR 1 375 0 236 204 0 0 chr13 20996160 20996209 -98748689 + A-rich Low_complexity Low_complexity 1 49 0 2500 62 7 0 chr13 20997720 20998029 -98746869 - AluY SINE Alu 0 311 1 314 61 20 0 chr13 20998031 20998080 -98746818 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 585 253 22 11 chr13 20998154 20998332 -98746566 - HAL1 LINE L1 -705 1802 1623 204 347 14 20 chr13 20998857 20999004 -98745894 + CT-rich Low_complexity Low_complexity 3 148 0 320 267 108 23 chr13 20999204 20999380 -98745518 - HAL1 LINE L1 -886 1621 1431 2192 84 3 10 chr13 20999415 20999711 -98745187 - AluY SINE Alu -17 294 1 258 274 0 0 chr13 20999722 20999773 -98745125 + MIR SINE MIR 73 123 -85 1974 115 36 20 chr13 20999802 21000106 -98744792 - AluSq SINE Alu -4 309 1 190 302 19 0 chr13 21000157 21000210 -98744688 + L2 LINE L2 2983 3036 -236 2167 140 62 12 chr13 21000229 21000635 -98744263 + MSTB LTR MaLR 1 426 0 2329 105 0 0 chr13 21000654 21000958 -98743940 - AluSg1 SINE Alu -5 304 1 483 307 34 11 chr13 21001377 21001553 -98743345 + MIR SINE MIR 14 193 -69 424 141 45 34 chr13 21002599 21002776 -98742122 + (TA)n Simple_repeat Simple_repeat 1 179 0 6143 149 59 19 chr13 21002831 21004015 -98740883 + Tigger3b DNA MER2_type 1 1231 0 22 0 0 0 chr13 21004897 21004919 -98739979 + AT_rich Low_complexity Low_complexity 1 22 0 643 260 41 6 chr13 21005847 21006016 -98738882 - MIR SINE MIR -14 248 74 2253 90 17 0 chr13 21006026 21006325 -98738573 + AluY SINE Alu 1 304 -7 780 202 85 4 chr13 21006325 21006597 -98738301 + L1MB3 LINE L1 3041 3334 -2812 1996 92 46 4 chr13 21006608 21006889 -98738009 + AluSc SINE Alu 1 293 -16 4324 200 42 14 chr13 21006890 21008695 -98736203 + L1MB3 LINE L1 4327 6181 -2 306 343 126 0 chr13 21009036 21009211 -98735687 - MIR SINE MIR -17 245 49 2442 59 3 3 chr13 21009244 21009550 -98735348 - AluY SINE Alu -5 306 1 435 38 0 0 chr13 21010025 21010078 -98734820 + (TG)n Simple_repeat Simple_repeat 2 54 0 1996 141 0 10 chr13 21011511 21011824 -98733074 - AluSx SINE Alu -2 310 1 197 116 0 23 chr13 21012534 21012577 -98732321 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 24 53 0 0 chr13 21012709 21012747 -98732151 + AT_rich Low_complexity Low_complexity 1 38 0 470 314 100 32 chr13 21013035 21013106 -98731792 - L1ME4a LINE L1 -209 5912 5847 2179 109 7 0 chr13 21013106 21013400 -98731498 - AluSp SINE Alu -7 306 11 470 314 100 32 chr13 21013400 21013669 -98731229 - L1ME4a LINE L1 -274 5847 5549 227 255 0 0 chr13 21014213 21014260 -98730638 + (CA)n Simple_repeat Simple_repeat 1 47 0 24 85 0 0 chr13 21015205 21015264 -98729634 + AT_rich Low_complexity Low_complexity 1 59 0 355 326 68 7 chr13 21015275 21015422 -98729476 + MIR SINE MIR 21 176 -86 374 293 95 48 chr13 21015971 21016391 -98728507 - L1M4 LINE L1 -2955 3191 2752 479 194 40 49 chr13 21016788 21016827 -98728071 - L1ME1 LINE L1 -5 6161 6123 2507 41 0 3 chr13 21016827 21017121 -98727777 + AluY SINE Alu 1 293 -18 479 194 40 49 chr13 21017121 21017276 -98727622 - L1ME1 LINE L1 -43 6123 5965 336 232 37 0 chr13 21017433 21017515 -98727383 + L1MC1 LINE L1 5997 6081 -252 330 258 6 50 chr13 21017518 21017677 -98727221 - MER52A LTR ERV1 -3 1752 1601 623 206 21 185 chr13 21017677 21018270 -98726628 - MER52A LTR ERV1 -141 495 283 1704 169 11 0 chr13 21018495 21018773 -98726125 - AluJo SINE Alu -31 281 1 235 299 93 31 chr13 21019020 21019117 -98725781 + L2 LINE L2 3162 3264 -8 363 302 76 6 chr13 21019234 21019406 -98725492 + MIR SINE MIR 21 204 -58 989 283 187 38 chr13 21021804 21022829 -98722069 - L2 LINE L2 -52 3261 1968 2151 130 3 13 chr13 21024234 21024549 -98720349 - AluSq SINE Alu -1 312 1 207 139 0 0 chr13 21024961 21024997 -98719901 + (TG)n Simple_repeat Simple_repeat 2 37 0 348 255 89 25 chr13 21025231 21025388 -98719510 - MLT1D LTR MaLR -262 243 77 4246 217 28 28 chr13 21025423 21026408 -98718490 + L1MC2 LINE L1 4378 5361 -983 2629 90 19 3 chr13 21026408 21026775 -98718123 + THE1C LTR MaLR 1 373 -2 4246 217 28 28 chr13 21026775 21027631 -98717267 + L1MC2 LINE L1 5361 6226 -118 321 26 0 0 chr13 21027631 21027669 -98717229 + (TG)n Simple_repeat Simple_repeat 1 38 0 4246 217 28 28 chr13 21027669 21027789 -98717109 + L1MC2 LINE L1 6226 6344 0 3054 171 35 62 chr13 21027765 21028168 -98716730 + L1MB7 LINE L1 5297 5709 -475 * 2018 91 3 24 chr13 21028168 21028482 -98716416 + AluY SINE Alu 1 308 0 3054 171 35 62 chr13 21028482 21028934 -98715964 + L1MB7 LINE L1 5709 6130 -54 2271 72 21 0 chr13 21029035 21029326 -98715572 - AluY SINE Alu -14 297 1 2317 98 0 25 chr13 21029870 21030185 -98714713 - AluY SINE Alu -4 307 1 3649 171 17 65 chr13 21030229 21031212 -98713686 + L1MA8 LINE L1 4857 5760 -531 2322 107 0 0 chr13 21031212 21031521 -98713377 + AluSg SINE Alu 1 309 -1 3649 171 17 65 chr13 21031521 21031834 -98713064 + L1MA8 LINE L1 5760 6086 -205 210 375 55 34 chr13 21031988 21032225 -98712673 - L2 LINE L2 -661 2653 2412 2175 111 7 0 chr13 21032348 21032645 -98712253 + AluSg SINE Alu 1 299 -11 1603 174 7 43 chr13 21032964 21033268 -98711630 - AluJb SINE Alu -15 297 5 2511 73 0 0 chr13 21033291 21033592 -98711306 - AluY SINE Alu -4 307 7 678 84 0 0 chr13 21033933 21034028 -98710870 - AluY SINE Alu 0 311 217 23 33 0 0 chr13 21034313 21034343 -98710555 + AT_rich Low_complexity Low_complexity 1 30 0 1550 195 25 42 chr13 21037507 21037938 -98706960 - L1MB7 LINE L1 -9 6175 5752 1169 248 26 0 chr13 21037942 21038253 -98706645 + L1MB7 LINE L1 5404 5722 -456 238 302 10 21 chr13 21039173 21039269 -98705629 + L2 LINE L2 3177 3271 -1 266 328 136 39 chr13 21039327 21039885 -98705013 - L2 LINE L2 -573 2741 2130 1290 218 120 19 chr13 21039976 21040393 -98704505 + MLT1C LTR MaLR 3 461 -6 46 45 0 0 chr13 21041672 21041739 -98703159 + AT_rich Low_complexity Low_complexity 1 67 0 2345 112 0 6 chr13 21042354 21042668 -98702230 - AluSx SINE Alu 0 312 1 180 0 0 0 chr13 21042746 21042766 -98702132 + (CA)n Simple_repeat Simple_repeat 1 20 0 26 23 0 23 chr13 21043089 21043112 -98701786 + AT_rich Low_complexity Low_complexity 1 24 -19 2165 94 0 3 chr13 21043112 21043398 -98701500 + AluSg SINE Alu 1 285 -25 26 23 0 23 chr13 21043398 21043418 -98701480 + AT_rich Low_complexity Low_complexity 24 43 0 279 285 69 32 chr13 21043994 21044240 -98700658 - L1M4 LINE L1 -1995 4151 3897 228 35 0 0 chr13 21044313 21044342 -98700556 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 298 298 114 32 chr13 21044609 21044767 -98700131 + L2 LINE L2 3102 3272 0 610 287 36 24 chr13 21045066 21045400 -98699498 + L1MEd LINE L1 920 1257 -4862 352 316 94 33 chr13 21045491 21045703 -98699195 + L1MEd LINE L1 1437 1661 -4649 1538 95 0 25 chr13 21045834 21046077 -98698821 + L1MC/D LINE L1 5321 5557 -787 325 298 12 0 chr13 21046177 21046261 -98698637 - Tigger7 DNA MER2_type -318 232 148 4468 141 47 44 chr13 21046302 21046395 -98698503 - L1MA7 LINE L1 -60 6231 6140 3352 136 7 31 chr13 21046395 21046983 -98697915 + L1PA16 LINE L1 5584 6157 -9 4468 141 47 44 chr13 21046983 21047845 -98697053 - L1MA7 LINE L1 -151 6140 5273 2173 100 0 0 chr13 21050550 21050830 -98694068 + AluSc SINE Alu 1 280 -29 2409 82 0 6 chr13 21050866 21051181 -98693717 + AluSq SINE Alu 1 313 0 199 324 28 0 chr13 21051201 21051272 -98693626 + MIR SINE MIR 57 129 -133 302 358 7 7 chr13 21051717 21051868 -98693030 + LTR33 LTR ERVL 1 151 -370 197 197 16 0 chr13 21052101 21052162 -98692736 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 929 118 0 0 chr13 21052621 21052748 -98692150 - AluJb SINE Alu -16 296 170 733 107 0 9 chr13 21052864 21052976 -98691922 + LTR1 LTR ERV1 382 492 -293 1660 94 0 18 chr13 21052976 21053200 -98691698 - AluY SINE Alu -91 220 1 362 208 28 0 chr13 21053202 21053308 -98691590 + L1ME2 LINE L1 4611 4719 -1427 * 5057 144 42 22 chr13 21053284 21054510 -98690388 + L1MA8 LINE L1 5042 6290 -1 1780 244 47 43 chr13 21054542 21055618 -98689280 + L1ME2 LINE L1 4694 5781 -381 2315 100 0 25 chr13 21055618 21055797 -98689101 - AluSq SINE Alu -2 311 142 2219 98 3 49 chr13 21055797 21056125 -98688773 - AluSp SINE Alu 0 313 1 2315 100 0 25 chr13 21056125 21056264 -98688634 - AluSq SINE Alu -171 142 1 1780 244 47 43 chr13 21056264 21056337 -98688561 + L1ME2 LINE L1 5781 5852 -310 290 311 40 13 chr13 21056358 21056509 -98688389 + L1ME2 LINE L1 5910 6064 -100 * 5386 211 92 52 chr13 21056504 21058159 -98686739 + L1PA13 LINE L1 5293 5438 -725 418 162 0 0 chr13 21058159 21058227 -98686671 + MLT1A1 LTR MaLR 248 315 -50 5386 211 92 52 chr13 21058227 21058982 -98685916 + L1PA13 LINE L1 5438 6162 -1 253 270 40 0 chr13 21058988 21059114 -98685784 + (TA)n Simple_repeat Simple_repeat 1 131 0 189 0 0 0 chr13 21059980 21060001 -98684897 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 277 384 38 27 chr13 21060072 21060257 -98684641 - MIR SINE MIR -74 188 2 6800 114 7 9 chr13 21060440 21061411 -98683487 - LTR5 LTR ERVK 0 969 1 493 291 53 68 chr13 21061728 21061824 -98683074 - MIR SINE MIR 0 262 166 2225 109 0 26 chr13 21061824 21062135 -98682763 - AluSc SINE Alu -6 303 1 493 291 53 68 chr13 21062135 21062303 -98682595 - MIR SINE MIR -96 166 2 2060 120 21 3 chr13 21062756 21063047 -98681851 - AluSq SINE Alu -17 296 1 2064 156 0 0 chr13 21063462 21063764 -98681134 + AluSx SINE Alu 1 302 -10 2449 83 0 0 chr13 21064329 21064629 -98680269 - AluY SINE Alu -11 300 1 2135 106 0 0 chr13 21065181 21065498 -98679400 - AluY SINE Alu 0 317 1 4639 170 14 21 chr13 21065509 21066228 -98678670 - L1MA6 LINE L1 -5 6295 5583 1673 94 0 45 chr13 21066228 21066472 -98678426 - AluSc SINE Alu -5 304 72 4639 170 14 21 chr13 21066472 21066685 -98678213 - L1MA6 LINE L1 -717 5583 5370 1129 152 8 25 chr13 21066685 21066928 -98677970 + L1 LINE L1 5091 5329 -817 2464 135 8 0 chr13 21066928 21067320 -98677578 + L1PA13 LINE L1 5750 6144 -19 1864 67 28 0 chr13 21067351 21067606 -98677292 + L1PA8 LINE L1 5854 6115 -57 1900 225 83 62 chr13 21067842 21068012 -98676886 - MLT1E1 LTR MaLR 0 654 489 1977 135 3 42 chr13 21068012 21068324 -98676574 - AluSx SINE Alu -12 300 1 1900 225 83 62 chr13 21068324 21068385 -98676513 - MLT1E1 LTR MaLR -165 489 431 228 35 0 0 chr13 21068385 21068414 -98676484 + (TG)n Simple_repeat Simple_repeat 1 29 0 1900 225 83 62 chr13 21068414 21068822 -98676076 - MLT1E1 LTR MaLR -223 431 1 2447 64 18 12 chr13 21069033 21069363 -98675535 - L1PA8 LINE L1 0 6172 5841 2211 95 0 14 chr13 21069374 21069668 -98675230 - AluSx SINE Alu -18 294 5 403 338 35 25 chr13 21069995 21070309 -98674589 + L1MB5 LINE L1 39 355 -6029 3287 238 29 41 chr13 21070430 21071728 -98673170 + L1MB5 LINE L1 554 1842 -4542 848 130 8 23 chr13 21071777 21071908 -98672990 + AluSg/x SINE Alu 161 289 -20 5185 236 58 38 chr13 21071908 21073744 -98671154 + L1MB5 LINE L1 3279 5076 -1334 2238 101 0 7 chr13 21073744 21074042 -98670856 + AluY SINE Alu 1 296 -15 5185 236 58 38 chr13 21074042 21074455 -98670443 + L1MB5 LINE L1 5076 5479 -931 2029 147 0 10 chr13 21074455 21074767 -98670131 - AluSq SINE Alu -4 309 1 5185 236 58 38 chr13 21074767 21074857 -98670041 + L1MB5 LINE L1 5479 5566 -844 1454 162 3 81 chr13 21074857 21075141 -98669757 + AluJo SINE Alu 15 276 -36 5185 236 58 38 chr13 21075141 21075852 -98669046 + L1MB5 LINE L1 5566 6402 -8 341 306 91 30 chr13 21075924 21076123 -98668775 + MIR SINE MIR 46 256 -6 1681 181 18 15 chr13 21076650 21076992 -98667906 + MER2 DNA MER2_type 1 343 -1 902 193 0 0 chr13 21077034 21077184 -98667714 - AluSg/x SINE Alu -14 296 147 2344 155 50 17 chr13 21077184 21077649 -98667249 - LTR12 LTR ERV1 -234 480 1 689 162 8 0 chr13 21077681 21077798 -98667100 - FLAM_C SINE Alu -15 118 1 2183 82 0 0 chr13 21077919 21078200 -98666698 - AluSq SINE Alu -32 281 1 629 302 57 41 chr13 21078402 21078862 -98666036 + MER21-int LTR ERV1 3630 4096 -95 247 362 32 0 chr13 21080028 21080122 -98664776 + L2 LINE L2 3212 3308 -5 24 53 0 0 chr13 21080880 21080918 -98663980 + AT_rich Low_complexity Low_complexity 1 38 0 33 66 0 0 chr13 21080939 21081000 -98663898 + AT_rich Low_complexity Low_complexity 1 61 0 2324 72 3 0 chr13 21081898 21082189 -98662709 - AluY SINE Alu -19 292 1 957 157 0 0 chr13 21085996 21086149 -98658749 + MSTC LTR MaLR 1 153 -275 1640 164 4 4 chr13 21086179 21086441 -98658457 + AluJo SINE Alu 29 290 -22 1521 147 27 31 chr13 21086445 21086738 -98658160 + MSTC LTR MaLR 137 428 0 2368 67 0 7 chr13 21087350 21087648 -98657250 + AluY SINE Alu 1 296 -15 2117 109 3 0 chr13 21087657 21087940 -98656958 + AluSg SINE Alu 7 290 -20 189 0 0 0 chr13 21089104 21089125 -98655773 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2251 118 3 0 chr13 21089609 21089913 -98654985 + AluSg SINE Alu 1 305 -5 2246 118 0 0 chr13 21089919 21090216 -98654682 + AluSg SINE Alu 1 297 -13 2399 75 0 3 chr13 21090322 21090628 -98654270 - AluY SINE Alu -6 305 1 2192 222 62 22 chr13 21090628 21091273 -98653625 - Tigger6a DNA MER2_type -64 1019 349 2012 92 14 24 chr13 21091295 21091587 -98653311 - AluSx SINE Alu -23 289 1 180 0 0 0 chr13 21091768 21091788 -98653110 + (T)n Simple_repeat Simple_repeat 1 20 0 1183 107 0 0 chr13 21091811 21091970 -98652928 - AluSq SINE Alu -33 280 122 183 152 0 0 chr13 21091970 21092016 -98652882 + (TA)n Simple_repeat Simple_repeat 2 47 0 885 88 72 0 chr13 21092019 21092144 -98652754 - AluSg SINE Alu -176 134 1 240 226 0 0 chr13 21093037 21093099 -98651799 + T-rich Low_complexity Low_complexity 1 62 0 318 286 188 45 chr13 21093102 21093256 -98651642 - MIR3 SINE MIR -13 195 20 26 30 0 0 chr13 21094745 21094778 -98650120 + AT_rich Low_complexity Low_complexity 1 33 0 2126 78 34 3 chr13 21095220 21095513 -98649385 - AluY SINE Alu -9 302 1 28 86 0 0 chr13 21095719 21095789 -98649109 + AT_rich Low_complexity Low_complexity 1 70 0 514 246 179 17 chr13 21096472 21096651 -98648247 - MIR SINE MIR -19 243 36 282 250 88 12 chr13 21097324 21097404 -98647494 + L2 LINE L2 2093 2178 -1136 22 0 0 0 chr13 21098322 21098344 -98646554 + AT_rich Low_complexity Low_complexity 1 22 0 369 192 92 23 chr13 21098373 21098503 -98646395 - L1MC5 LINE L1 -39 7922 7784 30 0 0 0 chr13 21098846 21098876 -98646022 + AT_rich Low_complexity Low_complexity 1 30 0 2178 71 0 3 chr13 21098876 21099195 -98645703 + AluY SINE Alu 1 318 0 2296 80 0 32 chr13 21099613 21099925 -98644973 + AluY SINE Alu 1 302 -9 2606 48 0 7 chr13 21100380 21100690 -98644208 - AluY SINE Alu -1 310 3 1064 250 113 46 chr13 21102231 21102666 -98642232 - L1ME3A LINE L1 -9 6161 5664 2534 68 0 6 chr13 21102666 21102977 -98641921 - AluY SINE Alu -2 309 1 1064 250 113 46 chr13 21102977 21103216 -98641682 - L1ME3A LINE L1 -506 5664 5442 338 251 145 51 chr13 21103392 21103624 -98641274 + MLT1G3 LTR MaLR 156 447 -108 870 251 163 44 chr13 21103784 21104256 -98640642 - MLT1G LTR MaLR 0 590 30 1077 155 0 0 chr13 21104509 21104670 -98640228 - AluSg/x SINE Alu -15 297 137 581 265 105 43 chr13 21104681 21105054 -98639844 - L1ME3A LINE L1 -1036 5110 4715 255 61 0 0 chr13 21105065 21105098 -98639800 + (CA)n Simple_repeat Simple_repeat 2 34 0 863 245 88 58 chr13 21105098 21105653 -98639245 - L1ME3A LINE L1 -1531 4615 4044 7308 53 7 47 chr13 21105831 21106820 -98638078 - SVA Other Other -3 1383 434 261 0 0 0 chr13 21106991 21107020 -98637878 + (GGGAGA)n Simple_repeat Simple_repeat 2 30 0 364 304 0 40 chr13 21107188 21107296 -98637602 + L2 LINE L2 3194 3298 -15 2247 100 0 3 chr13 21107296 21107597 -98637301 + AluY SINE Alu 1 300 -11 364 304 0 40 chr13 21107597 21107613 -98637285 + L2 LINE L2 3298 3313 0 692 11 11 0 chr13 21108838 21108925 -98635973 - L1PA3 LINE L1 0 6155 6068 1906 182 11 3 chr13 21109218 21109587 -98635311 - L1MB1 LINE L1 -103 6065 5694 272 172 10 91 chr13 21109593 21109692 -98635206 + L1MB1 LINE L1 5587 5677 -494 308 305 76 8 chr13 21109701 21109819 -98635079 - MIR SINE MIR -122 140 15 23 0 0 0 chr13 21110060 21110083 -98634815 + AT_rich Low_complexity Low_complexity 1 23 0 752 253 0 0 chr13 21110330 21110480 -98634418 - FRAM SINE Alu -16 150 1 2346 66 7 23 chr13 21110489 21110794 -98634104 - AluY SINE Alu -11 300 1 587 142 38 0 chr13 21111164 21111270 -98633628 - L1M3 LINE L1 -365 5803 5694 2456 70 0 0 chr13 21111749 21112050 -98632848 + AluY SINE Alu 1 301 -10 2964 200 16 8 chr13 21112919 21113627 -98631271 - L1MD2 LINE L1 -471 5888 5177 345 314 86 69 chr13 21113636 21113881 -98631017 + L1ME3 LINE L1 5618 5866 -296 359 31 31 155 chr13 21113897 21114058 -98630840 + (TATAA)n Simple_repeat Simple_repeat 4 144 0 336 48 0 0 chr13 21114497 21114539 -98630359 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 2560 67 0 3 chr13 21114833 21115146 -98629752 - AluSq SINE Alu -1 312 1 2435 122 11 6 chr13 21115658 21116020 -98628878 + THE1B LTR MaLR 1 364 0 11102 95 33 2 chr13 21116020 21117552 -98627346 + THE1B-int LTR MaLR 1 1580 0 2569 114 0 8 chr13 21117552 21117919 -98626979 + THE1B LTR MaLR 1 364 0 649 158 73 43 chr13 21118102 21118266 -98626632 - MLT1E LTR MaLR -63 530 362 * 1507 199 13 10 chr13 21118258 21118569 -98626329 + MLT1A2 LTR MaLR 63 374 0 291 182 23 11 chr13 21118775 21118863 -98626035 + CT-rich Low_complexity Low_complexity 3 91 0 2478 68 3 0 chr13 21119437 21119745 -98625153 + AluY SINE Alu 2 310 -1 950 182 152 20 chr13 21120139 21120435 -98624463 + LTR54B LTR ERV1 3 337 -161 802 223 107 93 chr13 21120624 21121064 -98623834 - MER4C LTR ERV1 0 465 20 297 0 0 0 chr13 21121067 21121100 -98623798 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2042 111 4 0 chr13 21121100 21121379 -98623519 - AluSx SINE Alu -32 280 1 5873 145 45 91 chr13 21121380 21121781 -98623117 - LTR49-int LTR ERV1 -987 5344 4926 2424 69 0 7 chr13 21121781 21122087 -98622811 + AluY SINE Alu 1 304 -7 5873 145 45 91 chr13 21122087 21122130 -98622768 - LTR49-int LTR ERV1 -1405 4926 4883 2400 93 7 3 chr13 21122130 21122440 -98622458 + AluY SINE Alu 1 311 0 5873 145 45 91 chr13 21122440 21122537 -98622361 - LTR49-int LTR ERV1 -1448 4883 4783 2665 122 38 2 chr13 21122537 21122954 -98621944 - L1PA16 LINE L1 -9 6157 5726 5873 145 45 91 chr13 21122954 21123425 -98621473 - LTR49-int LTR ERV1 -1548 4783 4292 360 150 17 0 chr13 21123425 21123485 -98621413 + AluS SINE Alu 233 293 -7 5873 145 45 91 chr13 21123485 21123976 -98620922 - LTR49-int LTR ERV1 -2039 4292 3853 2216 112 13 0 chr13 21123976 21124279 -98620619 + AluSq SINE Alu 1 307 -6 5873 145 45 91 chr13 21124279 21124324 -98620574 - LTR49-int LTR ERV1 -2478 3853 3807 1201 99 17 28 chr13 21124324 21124505 -98620393 - 7SLRNA srpRNA srpRNA -9 311 133 2526 196 69 94 chr13 21124505 21125502 -98619396 - LTR49-int LTR ERV1 -1606 3274 2303 3883 30 17 0 chr13 21125505 21125978 -98618920 + LTR2B LTR ERV1 10 490 0 1136 227 42 73 chr13 21125978 21126538 -98618360 - LTR49-int LTR ERV1 -4263 3274 1580 462 222 26 98 chr13 21126507 21126660 -98618238 - LTR49-int LTR ERV1 -4146 2185 2044 * 1270 151 36 0 chr13 21126666 21126891 -98618007 + MER50 LTR ERV1 1 233 -501 1122 138 16 0 chr13 21127087 21127276 -98617622 + MER4B LTR ERV1 400 591 -19 786 85 53 116 chr13 21127276 21127465 -98617433 + PABL_A-int LTR ERV1 629 805 -4210 * 3619 73 93 41 chr13 21127462 21127661 -98617237 + PABL_A-int LTR ERV1 1803 1990 -4608 1985 124 22 38 chr13 21127661 21127976 -98616922 - AluSp SINE Alu -3 310 1 3619 73 93 41 chr13 21127976 21128435 -98616463 + PABL_A-int LTR ERV1 1990 2495 -4103 1064 145 90 10 chr13 21128435 21128635 -98616263 - LTR8 LTR ERV1 -434 257 42 910 83 8 0 chr13 21128635 21128756 -98616142 - AluSp SINE Alu -16 297 176 3703 60 43 0 chr13 21128756 21129226 -98615672 + LTR2B LTR ERV1 1 490 0 5360 92 58 19 chr13 21129226 21130085 -98614813 + Harlequin LTR ERV1 1 893 -6003 * 6364 63 46 0 chr13 21130080 21131038 -98613860 + Harlequin LTR ERV1 1572 2573 -4323 23068 112 11 9 chr13 21131039 21134572 -98610326 + Harlequin LTR ERV1 3353 6892 -4 3707 55 45 0 chr13 21134575 21135044 -98609854 + LTR2B LTR ERV1 1 490 0 352 105 35 0 chr13 21135044 21135101 -98609797 - AluSp SINE Alu -124 179 121 862 132 0 22 chr13 21135101 21135237 -98609661 - AluJo/FLAM SINE Alu -169 133 1 2284 90 0 82 chr13 21135237 21135283 -98609615 + MER4A-int LTR ERV1 2684 2732 -3866 2538 77 0 3 chr13 21135283 21135595 -98609303 - AluY SINE Alu 0 311 1 2284 90 0 82 chr13 21135595 21136037 -98608861 + MER4A-int LTR ERV1 2732 3132 -3466 8870 93 47 36 chr13 21136066 21136166 -98608732 + MER4A-int LTR ERV1 3453 3550 -3048 2058 94 7 7 chr13 21136166 21136452 -98608446 + AluY SINE Alu 1 286 -25 8870 93 47 36 chr13 21136452 21137968 -98606930 + MER4A-int LTR ERV1 3550 6598 0 281 125 375 14 chr13 21137970 21138042 -98606856 + MER4A LTR ERV1 1 98 -566 1864 120 8 46 chr13 21138042 21138400 -98606498 + MER4A LTR ERV1 262 664 0 * 2747 174 8 40 chr13 21138400 21138912 -98605986 + MER50 LTR ERV1 228 722 -12 220 200 0 0 chr13 21138983 21139038 -98605860 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 430 244 43 43 chr13 21139038 21139184 -98605714 - MER41-int LTR ERV1 -3703 2243 2121 2440 113 86 60 chr13 21139281 21139734 -98605164 + MER4C LTR ERV1 1 465 0 321 185 62 0 chr13 21139759 21139824 -98605074 + LTR9 LTR ERV1 544 612 0 6561 157 114 75 chr13 21139824 21140589 -98604309 + LTR9-int LTR ERV1 283 1017 -5581 321 26 0 0 chr13 21140589 21140627 -98604271 + (TG)n Simple_repeat Simple_repeat 2 39 0 6561 157 114 75 chr13 21140627 21141420 -98603478 + LTR9-int LTR ERV1 1017 1995 -4603 2085 142 0 0 chr13 21141420 21141715 -98603183 + AluSx SINE Alu 1 295 -17 6561 157 114 75 chr13 21141715 21142226 -98602672 + LTR9-int LTR ERV1 1995 2485 -4113 416 45 80 0 chr13 21142389 21142477 -98602421 + GA-rich Low_complexity Low_complexity 2 96 0 3990 147 82 57 chr13 21143398 21143431 -98601467 + LTR9-int LTR ERV1 2924 2955 -3643 2253 99 3 0 chr13 21143431 21143724 -98601174 + AluY SINE Alu 1 294 -17 3990 147 82 57 chr13 21143724 21144724 -98600174 + LTR9-int LTR ERV1 2955 3983 -2615 4761 118 122 46 chr13 21144726 21146166 -98598732 - pTR5 LTR ERV1 0 2438 743 6761 139 56 50 chr13 21146166 21147553 -98597345 + LTR9-int LTR ERV1 3979 5357 -1241 408 20 0 0 chr13 21147553 21147602 -98597296 + (TA)n Simple_repeat Simple_repeat 2 50 0 1954 151 0 0 chr13 21147607 21147891 -98597007 - AluSx SINE Alu -28 284 1 6761 139 56 50 chr13 21147891 21147928 -98596970 + LTR9-int LTR ERV1 5360 5417 -1181 822 179 155 29 chr13 21147936 21148143 -98596755 + MER4C LTR ERV1 1 233 -232 3408 112 47 4 chr13 21148158 21148648 -98596250 + MER9 LTR ERVK 1 511 0 1061 62 0 0 chr13 21148648 21148778 -98596120 + HERVK9 LTR ERVK 1 130 -5786 697 255 60 39 chr13 21148790 21149166 -98595732 + MER4C LTR ERV1 141 465 0 641 167 35 21 chr13 21149251 21149395 -98595503 + MER4C-int LTR ERV1 109 254 -6344 226 213 21 0 chr13 21149580 21149627 -98595271 + LTR49 LTR ERV1 261 308 -287 544 174 84 58 chr13 21149649 21149804 -98595094 + MER4C-int LTR ERV1 995 1153 -5178 2655 223 30 15 chr13 21150075 21151936 -98592962 + L1MB8 LINE L1 2865 6169 -9 186 43 0 0 chr13 21151944 21151967 -98592931 + (CA)n Simple_repeat Simple_repeat 1 23 0 3188 271 32 36 chr13 21151975 21153066 -98591832 - MER110-int LTR ERV1 -1547 3100 2014 2199 189 62 77 chr13 21153082 21153184 -98591714 - MLT1A1-int LTR MaLR -1180 555 453 2434 100 3 0 chr13 21153184 21153494 -98591404 + AluSx SINE Alu 1 311 -1 2199 189 62 77 chr13 21153494 21153953 -98590945 - MLT1A1-int LTR MaLR -1282 453 2 979 188 139 102 chr13 21153954 21154306 -98590592 - MLT1A1 LTR MaLR 0 365 1 2465 94 0 0 chr13 21154899 21155208 -98589690 - AluSq SINE Alu -4 309 1 423 333 76 54 chr13 21155272 21155452 -98589446 - MER110-int LTR ERV1 -4121 526 351 1657 114 165 4 chr13 21155452 21155707 -98589191 + AluSx SINE Alu 1 296 -16 423 333 76 54 chr13 21155707 21155817 -98589081 - MER110-int LTR ERV1 -4296 351 245 2327 94 0 3 chr13 21155817 21156114 -98588784 - AluSc SINE Alu -13 296 1 423 333 76 54 chr13 21156114 21156230 -98588668 - MER110-int LTR ERV1 -4402 245 110 252 0 0 0 chr13 21156842 21156870 -98588028 + (A)n Simple_repeat Simple_repeat 1 28 0 722 161 8 16 chr13 21156885 21157009 -98587889 - THE1C LTR MaLR -252 123 1 7365 223 77 17 chr13 21157010 21159977 -98584921 + L1ME1 LINE L1 2894 6059 -107 2420 94 0 0 chr13 21159977 21160285 -98584613 - AluSg SINE Alu -2 308 1 7365 223 77 17 chr13 21160285 21160394 -98584504 + L1ME1 LINE L1 6059 6160 -6 230 301 96 19 chr13 21160411 21160567 -98584331 + L1M2 LINE L1 2290 2457 -4392 22 0 0 0 chr13 21160635 21160657 -98584241 + AT_rich Low_complexity Low_complexity 1 22 0 209 286 0 0 chr13 21161874 21161923 -98582975 + (TG)n Simple_repeat Simple_repeat 1 49 0 5530 147 43 11 chr13 21164452 21164929 -98579969 - L1MA5A LINE L1 -1 6296 5836 402 57 0 0 chr13 21164929 21164982 -98579916 + (TG)n Simple_repeat Simple_repeat 2 54 0 5530 147 43 11 chr13 21164982 21165558 -98579340 - L1MA5A LINE L1 -461 5836 5209 1367 172 4 4 chr13 21165543 21165804 -98579094 + L1MA5A LINE L1 4963 5223 -923 * 812 282 176 33 chr13 21166094 21167533 -98577365 + L1ME2 LINE L1 3953 5593 -743 185 255 43 0 chr13 21167559 21167606 -98577292 - L2 LINE L2 -16 3297 3249 306 270 40 32 chr13 21167756 21167882 -98577016 + L1ME2 LINE L1 5758 5884 -280 5452 54 4 16 chr13 21168224 21168581 -98576317 + L1PA7 LINE L1 5472 5819 -335 2432 91 0 0 chr13 21168581 21168888 -98576010 + AluY SINE Alu 1 307 -4 5452 54 4 16 chr13 21168888 21169216 -98575682 + L1PA7 LINE L1 5819 6149 -5 21 0 0 0 chr13 21169216 21169237 -98575661 + AT_rich Low_complexity Low_complexity 1 21 0 482 281 104 58 chr13 21169330 21169457 -98575441 + L1MC3 LINE L1 4027 4147 -1999 1603 189 3 22 chr13 21169457 21169770 -98575128 + AluJo SINE Alu 1 307 -5 482 281 104 58 chr13 21169770 21170247 -98574651 + L1MC3 LINE L1 4147 4659 -1487 238 360 61 19 chr13 21170520 21170734 -98574164 + L1MC3 LINE L1 5376 5598 -523 269 289 30 30 chr13 21170942 21171077 -98573821 + L1MC3 LINE L1 5800 5934 -1874 3736 157 36 22 chr13 21172558 21173246 -98571652 - ERVL-B2 LTR ERVL -1634 4130 3433 6539 155 35 21 chr13 21173253 21173811 -98571087 - ERVL-B2 LTR ERVL -2909 2855 2307 1542 141 131 20 chr13 21173811 21174116 -98570782 + MER44D DNA MER2_type 1 609 0 6539 155 35 21 chr13 21174116 21174663 -98570235 - ERVL-B2 LTR ERVL -3457 2307 1734 866 213 0 0 chr13 21174663 21174813 -98570085 - FRAM SINE Alu -25 151 2 7974 199 68 10 chr13 21174813 21176468 -98568430 - ERVL-B2 LTR ERVL -4013 1751 2 2288 181 138 7 chr13 21176473 21176511 -98568387 - MLT2B2 LTR ERVL -8 507 475 210 91 0 0 chr13 21176511 21176544 -98568354 + (TA)n Simple_repeat Simple_repeat 2 34 0 2288 181 138 7 chr13 21176544 21176953 -98567945 - MLT2B2 LTR ERVL -40 475 1 270 0 0 0 chr13 21178906 21178936 -98565962 + (TG)n Simple_repeat Simple_repeat 2 31 0 1418 162 53 43 chr13 21179351 21179510 -98565388 - MLT1A2 LTR MaLR -56 318 153 225 0 0 0 chr13 21179510 21179535 -98565363 + (GA)n Simple_repeat Simple_repeat 1 25 0 1418 162 53 43 chr13 21179535 21179677 -98565221 - MLT1A2 LTR MaLR -221 153 14 952 117 5 126 chr13 21179852 21179888 -98565010 + MER53 DNA DNA 2 41 -148 2089 126 0 0 chr13 21179888 21180174 -98564724 + AluSq SINE Alu 1 286 -27 952 117 5 126 chr13 21180174 21180351 -98564547 + MER53 DNA DNA 41 189 0 391 99 10 59 chr13 21180457 21180558 -98564340 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 180 0 0 0 chr13 21181435 21181455 -98563443 + (TTGTG)n Simple_repeat Simple_repeat 3 22 0 6291 219 46 13 chr13 21181605 21182540 -98562358 + L1MC3 LINE L1 6223 7229 -556 2365 146 36 31 chr13 21182540 21182986 -98561912 - MER83 LTR ERV1 0 448 1 6291 219 46 13 chr13 21182986 21183563 -98561335 + L1MC3 LINE L1 7229 7785 0 233 121 0 0 chr13 21184658 21184691 -98560207 + MER94 DNA DNA 8 40 -94 389 217 58 50 chr13 21184709 21184829 -98560069 - L1MC4 LINE L1 0 8042 7922 254 313 22 37 chr13 21184836 21184970 -98559928 - L1MC4 LINE L1 -218 7824 7693 753 223 0 0 chr13 21184990 21185129 -98559769 - AluJb SINE Alu -37 275 137 1338 182 88 61 chr13 21185213 21185441 -98559457 - MER66B LTR ERV1 0 486 243 1979 129 0 62 chr13 21185441 21185750 -98559148 - AluSx SINE Alu -18 294 5 1338 182 88 61 chr13 21185750 21185883 -98559015 - MER66B LTR ERV1 -243 243 115 1168 178 50 0 chr13 21185897 21186099 -98558799 + MSTB LTR MaLR 215 426 0 241 235 59 10 chr13 21186749 21186851 -98558047 + MLT1D LTR MaLR 264 370 -135 191 254 14 28 chr13 21187951 21188022 -98556876 + L2 LINE L2 3126 3195 -77 1824 113 88 52 chr13 21189449 21189811 -98555087 + THE1C LTR MaLR 1 375 0 188 209 0 0 chr13 21194009 21194052 -98550846 + MIR SINE MIR 100 142 -120 280 209 0 75 chr13 21194087 21194154 -98550744 - L1MB7 LINE L1 -61 6123 6062 779 248 46 32 chr13 21194266 21194548 -98550350 - L1MB7 LINE L1 -80 6104 5819 403 173 22 32 chr13 21194582 21194683 -98550215 - L1MB7 LINE L1 -586 5585 5485 1131 98 0 0 chr13 21194851 21195014 -98549884 + (TTCC)n Simple_repeat Simple_repeat 3 165 0 718 209 4 8 chr13 21195029 21195265 -98549633 + CT-rich Low_complexity Low_complexity 1 235 0 815 190 29 0 chr13 21195268 21195442 -98549456 - L1MB7 LINE L1 -707 5467 5289 384 220 40 0 chr13 21196360 21196460 -98548438 - MIR SINE MIR -79 183 80 1102 264 34 3 chr13 21196505 21196854 -98548044 - MLT1A1 LTR MaLR -2 363 4 333 174 0 14 chr13 21197809 21197878 -98547020 + MLT1E1 LTR MaLR 185 252 -402 777 248 40 56 chr13 21198791 21198903 -98545995 + MLT1B LTR MaLR 93 205 -185 267 31 0 0 chr13 21198903 21198935 -98545963 + (CA)n Simple_repeat Simple_repeat 1 32 0 777 248 40 56 chr13 21198935 21199125 -98545773 + MLT1B LTR MaLR 205 390 0 328 302 80 31 chr13 21199125 21199491 -98545407 - L1ME LINE L1 -484 5637 5258 2058 117 6 46 chr13 21199534 21199860 -98545038 - AluSq SINE Alu 0 313 1 351 216 86 73 chr13 21199996 21200194 -98544704 - L1MB7 LINE L1 -1057 5089 4886 420 256 0 0 chr13 21200530 21200620 -98544278 - LTR33A LTR ERVL 0 523 434 321 267 13 0 chr13 21200829 21200904 -98543994 - LTR33 LTR ERVL -343 178 103 229 233 78 78 chr13 21201192 21201282 -98543616 - L1MB7 LINE L1 -1959 4187 4098 499 297 112 51 chr13 21201458 21201906 -98542992 - REP3 LTR ERV -87 475 1 482 252 109 46 chr13 21201932 21202234 -98542664 - L1MB7 LINE L1 -2153 3993 3673 7799 211 43 33 chr13 21202392 21204565 -98540333 - L1MB8 LINE L1 -6 6408 4191 2050 146 0 0 chr13 21204565 21204859 -98540039 - AluSg SINE Alu -16 294 1 7799 211 43 33 chr13 21204859 21205735 -98539163 - L1MB8 LINE L1 -2223 4191 3325 1038 276 39 3 chr13 21205891 21206228 -98538670 - L1MB8 LINE L1 -4536 1848 1500 2351 171 29 113 chr13 21206238 21206922 -98537976 + MER4E LTR ERV1 18 644 -135 2061 127 146 6 chr13 21206922 21207284 -98537614 - MER9 LTR ERVK 0 511 99 725 185 7 34 chr13 21207293 21207439 -98537459 + MER4D LTR ERV1 762 903 0 1464 258 33 0 chr13 21207440 21207859 -98537039 - L1MB8 LINE L1 -4906 1478 1046 1633 170 7 0 chr13 21207863 21208133 -98536765 + L1MC3 LINE L1 6684 6955 -830 1446 96 4 123 chr13 21208153 21208413 -98536485 + AluSc SINE Alu 73 301 -8 248 139 28 28 chr13 21208432 21208504 -98536394 + (TA)n Simple_repeat Simple_repeat 2 73 0 3593 208 37 46 chr13 21208921 21209284 -98535614 + L1M3 LINE L1 4327 4692 -1491 2353 107 0 0 chr13 21209284 21209584 -98535314 - AluSg SINE Alu -10 300 1 3593 208 37 46 chr13 21209584 21210492 -98534406 + L1M3 LINE L1 4692 5592 -591 523 158 47 0 chr13 21211265 21211375 -98533523 + MER61E LTR ERV1 1 118 -484 236 175 175 0 chr13 21211542 21211599 -98533299 + MER51A LTR ERV1 209 275 -359 * 1144 172 111 14 chr13 21211576 21211930 -98532968 + LTR25 LTR ERV1 397 569 0 328 324 87 18 chr13 21211958 21212177 -98532721 + MIR SINE MIR 13 246 -16 477 0 0 0 chr13 21212467 21212520 -98532378 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 248 204 21 43 chr13 21213643 21213736 -98531162 + L1ME4a LINE L1 5872 5962 -159 25 95 0 0 chr13 21213881 21213955 -98530943 + AT_rich Low_complexity Low_complexity 1 74 0 1132 284 108 39 chr13 21213975 21214346 -98530552 + L1M4 LINE L1 2340 2684 -3462 1971 138 0 10 chr13 21214346 21214643 -98530255 - AluSx SINE Alu -18 294 1 1132 284 108 39 chr13 21214643 21215405 -98529493 + L1M4 LINE L1 2684 3583 -2563 2144 112 20 0 chr13 21215405 21215699 -98529199 - AluSx SINE Alu -12 300 1 1132 284 108 39 chr13 21215699 21215910 -98528988 + L1M4 LINE L1 3583 3778 -2368 371 220 144 3 chr13 21216973 21217088 -98527810 + MER97a DNA MER1_type? 44 169 -725 203 253 70 70 chr13 21217148 21217239 -98527659 - MIR SINE MIR -99 163 70 2273 157 49 53 chr13 21217239 21217691 -98527207 + LTR47A LTR ERVL 1 450 -2 203 253 70 70 chr13 21217691 21217757 -98527141 - MIR SINE MIR -191 71 6 1492 216 113 30 chr13 21218754 21219180 -98525718 - MLT1C LTR MaLR 0 467 7 23 33 0 0 chr13 21219689 21219719 -98525179 + AT_rich Low_complexity Low_complexity 1 30 0 2251 113 7 3 chr13 21219912 21220222 -98524676 - AluSx SINE Alu -1 311 1 1317 169 42 122 chr13 21220574 21220958 -98523940 + MLT1A1 LTR MaLR 1 353 -12 2175 103 0 34 chr13 21221606 21221927 -98522971 + AluSg SINE Alu 1 310 0 27 0 0 0 chr13 21221940 21221967 -98522931 + AT_rich Low_complexity Low_complexity 1 27 0 196 225 0 0 chr13 21222237 21222277 -98522621 - MIR SINE MIR -26 236 197 381 203 16 23 chr13 21222444 21222572 -98522326 + CT-rich Low_complexity Low_complexity 5 131 0 2612 68 0 0 chr13 21222600 21222911 -98521987 - AluY SINE Alu 0 311 1 1041 303 33 23 chr13 21222911 21223764 -98521134 - L1M4c LINE L1 -3926 2746 1747 2863 219 18 58 chr13 21223776 21223839 -98521059 - L1M4c LINE L1 -5007 1535 1471 2054 134 23 0 chr13 21223839 21224138 -98520760 - AluSx SINE Alu -6 306 1 2863 219 18 58 chr13 21224138 21224973 -98519925 - L1M4c LINE L1 -5071 1471 673 2299 74 3 10 chr13 21224975 21225274 -98519624 + AluY SINE Alu 1 297 -14 391 279 10 10 chr13 21225376 21225480 -98519418 - L1M4c LINE L1 -5891 651 548 195 129 0 0 chr13 21225480 21225511 -98519387 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 2498 56 0 31 chr13 21225555 21225875 -98519023 - AluY SINE Alu -1 310 1 2269 92 3 0 chr13 21225885 21226218 -98518680 - AluSp SINE Alu 0 334 1 244 184 0 0 chr13 21227023 21227061 -98517837 + tRNA-Arg-AGA tRNA tRNA 1 38 -38 258 271 49 95 chr13 21227063 21227591 -98517307 + L1ME4a LINE L1 5609 6112 -9 2425 55 41 0 chr13 21228393 21228685 -98516213 + AluY SINE Alu 1 304 -7 275 270 146 30 chr13 21228738 21228971 -98515927 - LTR48 LTR ERV1 -6 781 522 324 70 0 0 chr13 21229123 21229166 -98515732 + (TA)n Simple_repeat Simple_repeat 2 44 0 311 280 59 8 chr13 21229285 21229403 -98515495 - LTR48B LTR ERV1 -380 264 141 299 231 15 0 chr13 21229429 21229494 -98515404 - MER34 LTR ERV1 -452 90 25 181 0 69 0 chr13 21229541 21229570 -98515328 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 2451 152 52 2 chr13 21230632 21231040 -98513858 - MSTA LTR MaLR 0 428 1 297 188 38 75 chr13 21231261 21231341 -98513557 - MER2 DNA MER2_type -1 344 268 1211 149 45 0 chr13 21231367 21231568 -98513330 - MER2 DNA MER2_type -135 210 1 241 262 60 0 chr13 21232281 21232365 -98512533 - MIR SINE MIR -93 169 81 1039 134 120 49 chr13 21233260 21233544 -98511354 - L1MA8 LINE L1 -5 6286 5983 234 244 37 73 chr13 21233660 21233703 -98511195 + MER57B LTR ERV1 312 351 -83 1329 244 103 44 chr13 21233703 21234157 -98510741 - LTR26E LTR ERV1 0 608 123 2294 95 7 0 chr13 21234164 21234470 -98510428 + AluY SINE Alu 1 308 -3 181 204 91 0 chr13 21235293 21235337 -98509561 - L2 LINE L2 -15 3298 3251 * 205 296 52 87 chr13 21235303 21235359 -98509539 - MIR SINE MIR -23 239 183 1755 153 7 23 chr13 21235359 21235660 -98509238 + AluSx SINE Alu 1 296 -16 205 296 52 87 chr13 21235660 21235775 -98509123 - MIR SINE MIR -79 183 74 1613 195 118 8 chr13 21236006 21236370 -98508528 + MLT2B3 LTR ERVL 4 407 -147 5493 52 33 13 chr13 21236379 21236997 -98507901 + MER11D LTR ERVK 1 636 -261 2928 19 0 0 chr13 21236997 21237314 -98507584 + AluYb8 SINE Alu 1 317 -1 5493 52 33 13 chr13 21237314 21237383 -98507515 + MER11D LTR ERVK 636 702 -195 1989 140 3 22 chr13 21240773 21241088 -98503810 + AluSc SINE Alu 1 309 0 366 313 133 17 chr13 21241272 21241505 -98503393 - L1MC/D LINE L1 -521 5641 5383 2410 122 49 35 chr13 21241855 21242281 -98502617 - MSTB1 LTR MaLR 0 432 1 22 56 0 0 chr13 21243064 21243100 -98501798 + AT_rich Low_complexity Low_complexity 1 36 0 2386 95 0 7 chr13 21243183 21243489 -98501409 + AluSx SINE Alu 3 306 -6 21 0 0 0 chr13 21244202 21244223 -98500675 + AT_rich Low_complexity Low_complexity 1 21 0 2169 137 116 18 chr13 21244510 21244898 -98500000 - MSTA LTR MaLR -2 426 1 226 318 0 18 chr13 21246037 21246147 -98498751 + L1MDa LINE L1 1267 1374 -5166 273 196 21 10 chr13 21246177 21246274 -98498624 + (TA)n Simple_repeat Simple_repeat 1 98 0 381 305 62 22 chr13 21246289 21246565 -98498333 + L1MDa LINE L1 1451 1782 -4885 2649 196 112 6 chr13 21246629 21247288 -98497610 - L1MB7 LINE L1 -9 6175 5447 28 0 0 0 chr13 21247341 21247369 -98497529 + AT_rich Low_complexity Low_complexity 1 28 0 2128 134 0 0 chr13 21247530 21247829 -98497069 + AluSx SINE Alu 2 300 -12 715 135 28 17 chr13 21248201 21248379 -98496519 + (TG)n Simple_repeat Simple_repeat 1 180 0 2377 75 3 3 chr13 21249475 21249782 -98495116 - AluY SINE Alu -4 307 1 1128 141 33 38 chr13 21250469 21250682 -98494216 + MSTC LTR MaLR 1 212 -216 22 56 0 0 chr13 21251392 21251428 -98493470 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr13 21251614 21251643 -98493255 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr13 21251958 21252004 -98492894 + AT_rich Low_complexity Low_complexity 1 46 0 532 301 117 8 chr13 21252273 21252522 -98492376 + L1MEc LINE L1 47 322 -6074 369 277 19 25 chr13 21252542 21252701 -98492197 + L1MEc LINE L1 362 519 -5877 3390 61 16 0 chr13 21253087 21253511 -98491387 - MER11B LTR ERVK -805 431 1 9654 190 30 8 chr13 21253513 21255519 -98489379 + L1PA15 LINE L1 3054 5149 -1016 2253 114 140 8 chr13 21255519 21255897 -98489001 + MSTA LTR MaLR 1 428 0 9654 190 30 8 chr13 21255897 21256933 -98487965 + L1PA15 LINE L1 5149 6161 -4 2168 182 26 5 chr13 21256929 21257357 -98487541 + L1MC3 LINE L1 5461 5897 -1888 * 1319 341 51 58 chr13 21257381 21258805 -98486093 + ERVL LTR ERVL 3915 5328 -436 2343 71 7 14 chr13 21259110 21259404 -98485494 - AluY SINE Alu -15 296 5 744 318 87 7 chr13 21259516 21259802 -98485096 + LTR16A1 LTR ERVL 148 456 -1 3819 93 2 8 chr13 21260115 21260629 -98484269 - MER9 LTR ERVK 0 511 1 2416 99 5 4 chr13 21260629 21260966 -98483932 - HERVK9 LTR ERVK 0 5916 4922 7865 96 4 6 chr13 21261007 21262063 -98482835 - HERVK9 LTR ERVK -282 5634 4581 1829 64 0 9 chr13 21262061 21262294 -98482604 - HERVK9 LTR ERVK -1975 3941 3711 * 11451 60 0 1 chr13 21262294 21263665 -98481233 - HERVK9 LTR ERVK -3130 2786 1417 257 310 78 0 chr13 21264247 21264363 -98480535 - MIR SINE MIR -67 195 71 566 285 109 0 chr13 21264437 21264602 -98480296 - MER5A DNA MER1_type 0 189 7 1795 142 43 13 chr13 21264759 21265061 -98479837 - AluSx SINE Alu -1 311 1 1215 184 49 0 chr13 21266773 21267017 -98477881 - L1MA9 LINE L1 -38 6274 6019 2060 156 56 67 chr13 21267388 21267618 -98477280 - MSTB LTR MaLR 0 426 202 2337 96 0 3 chr13 21267618 21267919 -98476979 - AluSg SINE Alu -10 300 1 2060 156 56 67 chr13 21267919 21268119 -98476779 - MSTB LTR MaLR -224 202 1 3021 63 7 85 chr13 21269197 21269657 -98475241 + HERVK9 LTR ERVK 145 568 -5348 2055 90 0 14 chr13 21269658 21269947 -98474951 + HERVK9 LTR ERVK 1113 1397 -4519 1312 160 9 5 chr13 21272725 21272937 -98471961 - pTR5 LTR ERV1 -2045 393 181 253 314 48 0 chr13 21272939 21273044 -98471854 - LTR30 LTR ERV1 -69 653 544 4011 176 81 38 chr13 21273048 21274015 -98470883 - pTR5 LTR ERV1 -417 2021 740 186 145 0 53 chr13 21277305 21277381 -98467517 + (GAATG)n Simple_repeat Simple_repeat 3 74 0 204 245 0 0 chr13 21278860 21278909 -98465989 + T-rich Low_complexity Low_complexity 1 49 0 210 200 40 0 chr13 21279505 21279555 -98465343 + L2 LINE L2 3221 3272 0 249 301 126 10 chr13 21279738 21279841 -98465057 - L1MC4 LINE L1 -1 8041 7927 561 326 100 41 chr13 21280823 21281049 -98463849 - L1M4 LINE L1 -838 5308 5097 2131 120 40 0 chr13 21281049 21281349 -98463549 + AluSx SINE Alu 1 312 0 561 326 100 41 chr13 21281349 21282283 -98462615 - L1M4 LINE L1 -1049 5097 4080 1470 77 15 5 chr13 21482528 21482723 -98262175 - AluY SINE Alu -114 197 1 491 266 85 53 chr13 21482737 21483056 -98261842 + L1ME4a LINE L1 5548 5876 -245 2285 80 3 0 chr13 21483066 21483354 -98261544 + AluY SINE Alu 19 307 -4 2191 101 11 0 chr13 21483801 21484088 -98260810 + AluSg SINE Alu 1 290 -20 22 0 0 0 chr13 21485477 21485499 -98259399 + AT_rich Low_complexity Low_complexity 1 22 0 212 189 0 0 chr13 21485773 21485810 -98259088 + T-rich Low_complexity Low_complexity 1 37 0 303 239 11 22 chr13 21486995 21487087 -98257811 + G-rich Low_complexity Low_complexity 6 96 0 24 77 0 0 chr13 21487817 21487869 -98257029 + AT_rich Low_complexity Low_complexity 1 52 0 796 263 134 88 chr13 21488014 21488538 -98256360 - L1ME3A LINE L1 -4 6166 5619 919 199 42 48 chr13 21488611 21488898 -98256000 - MLT1A1 LTR MaLR -2 363 1 2240 104 7 3 chr13 21489534 21489833 -98255065 - AluSq SINE Alu -13 300 1 254 269 15 0 chr13 21489910 21489977 -98254921 + L2 LINE L2 2943 3010 -262 2256 86 0 17 chr13 21490083 21490385 -98254513 - AluY SINE Alu -14 297 1 227 73 49 0 chr13 21490436 21490477 -98254421 + (CTAAT)n Simple_repeat Simple_repeat 4 46 0 7651 133 91 93 chr13 21492594 21494295 -98250603 - pTR5 LTR ERV1 0 2438 743 2087 130 0 0 chr13 21495241 21495533 -98249365 - AluSg SINE Alu -18 292 1 757 139 0 36 chr13 21495853 21495990 -98248908 + FLAM_C SINE Alu 12 143 0 2259 180 49 14 chr13 21496309 21496754 -98248144 - LOR1b LTR ERV1 0 461 1 1079 76 0 0 chr13 21497372 21497504 -98247394 + AluY SINE Alu 1 132 -179 2183 79 58 0 chr13 21497507 21497798 -98247100 + AluY SINE Alu 1 308 -3 2284 75 37 3 chr13 21498021 21498316 -98246582 + AluY SINE Alu 1 305 -6 207 0 0 0 chr13 21498334 21498357 -98246541 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 311 0 0 25 chr13 21499252 21499292 -98245606 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2073 48 48 0 chr13 21499297 21499546 -98245352 + AluY SINE Alu 2 262 -49 262 306 57 38 chr13 21499951 21500286 -98244612 - L1MDa LINE L1 -749 2152 1803 189 309 75 21 chr13 21500493 21500587 -98244311 - MIR SINE MIR -109 153 55 1974 218 81 31 chr13 21500761 21502080 -98242818 - L1ME2 LINE L1 -55 6109 4589 341 302 168 22 chr13 21502096 21502645 -98242253 + L1ME LINE L1 4572 5200 -946 27 73 0 0 chr13 21502669 21502724 -98242174 + AT_rich Low_complexity Low_complexity 1 55 0 366 260 97 32 chr13 21502822 21502976 -98241922 + MLT1G1 LTR MaLR 16 179 -416 695 276 144 29 chr13 21502976 21503386 -98241512 + L1ME LINE L1 5338 5794 -368 248 264 14 114 chr13 21503419 21503559 -98241339 - MIR SINE MIR -18 244 119 182 242 0 0 chr13 21504020 21504053 -98240845 + L2 LINE L2 3265 3297 -16 548 286 161 43 chr13 21504411 21504874 -98240024 - L2 LINE L2 -49 3264 2743 1550 206 37 42 chr13 21504882 21505261 -98239637 + MLT1B LTR MaLR 3 379 -11 1780 285 160 28 chr13 21505285 21506216 -98238682 - L2 LINE L2 -590 2724 1671 319 289 252 7 chr13 21506370 21506549 -98238349 + MIR SINE MIR 37 256 -6 213 211 14 28 chr13 21507185 21507256 -98237642 + (TA)n Simple_repeat Simple_repeat 1 70 0 2460 81 0 3 chr13 21508103 21508410 -98236488 - AluSc SINE Alu -3 306 1 22 35 0 0 chr13 21508425 21508454 -98236444 + AT_rich Low_complexity Low_complexity 1 29 0 228 182 23 0 chr13 21508646 21508690 -98236208 - L2 LINE L2 -1 3312 3268 2448 88 0 3 chr13 21509054 21509360 -98235538 - AluSp SINE Alu -8 305 1 2464 226 86 42 chr13 21509364 21510059 -98234839 - MER21B LTR ERV1 -137 726 1 255 219 154 73 chr13 21510085 21510208 -98234690 + L2 LINE L2 3137 3269 -3 2448 57 0 7 chr13 21510341 21510638 -98234260 - AluY SINE Alu -16 295 1 23 33 0 0 chr13 21511179 21511209 -98233689 + AT_rich Low_complexity Low_complexity 1 30 0 2574 99 14 0 chr13 21511297 21511641 -98233257 + L1PB1 LINE L1 5801 6149 -2 191 358 117 8 chr13 21512964 21513084 -98231814 - MIR SINE MIR -60 148 16 424 211 100 11 chr13 21513507 21513597 -98231301 - LTR12 LTR ERV1 -2 712 615 1648 142 53 114 chr13 21513599 21514030 -98230868 - LTR12 LTR ERV1 -309 405 1 306 209 20 37 chr13 21515292 21515377 -98229521 + MIR SINE MIR 34 121 -87 28 0 0 0 chr13 21515867 21515895 -98229003 + AT_rich Low_complexity Low_complexity 1 28 0 182 189 108 68 chr13 21516489 21516563 -98228335 + L2 LINE L2 2676 2752 -562 326 329 123 58 chr13 21516770 21517095 -98227803 + L2 LINE L2 2921 3266 -6 204 67 0 0 chr13 21517376 21517406 -98227492 + (TG)n Simple_repeat Simple_repeat 2 31 0 2105 130 10 0 chr13 21517571 21517871 -98227027 + AluSx SINE Alu 1 303 -9 2166 130 3 0 chr13 21517879 21518179 -98226719 + AluSx SINE Alu 1 301 -11 2325 101 0 0 chr13 21518187 21518484 -98226414 + AluSq SINE Alu 1 297 -16 2248 97 7 10 chr13 21518485 21518794 -98226104 + AluSc SINE Alu 2 309 0 2087 138 16 0 chr13 21521738 21522043 -98222855 - AluSg SINE Alu 0 310 1 2114 88 53 3 chr13 21522163 21522446 -98222452 - AluY SINE Alu -14 297 1 337 299 76 7 chr13 21522891 21523035 -98221863 - L2 LINE L2 -61 3252 3099 1259 271 46 51 chr13 21525020 21525382 -98219516 + L2 LINE L2 2427 2789 -524 1696 154 3 74 chr13 21525382 21525706 -98219192 - AluJo SINE Alu -9 303 3 1259 271 46 51 chr13 21525706 21526155 -98218743 + L2 LINE L2 2789 3232 -81 1091 220 26 111 chr13 21526199 21526585 -98218313 - MLT1A1 LTR MaLR 0 365 13 2274 60 3 3 chr13 21527077 21527382 -98217516 - AluY SINE Alu 0 305 1 262 277 9 18 chr13 21527998 21528110 -98216788 + GA-rich Low_complexity Low_complexity 2 112 0 499 137 0 0 chr13 21528379 21528452 -98216446 - AluSx SINE Alu -16 293 221 1435 144 14 0 chr13 21528532 21528747 -98216151 - AluSx SINE Alu -94 218 1 28 48 0 0 chr13 21528754 21528796 -98216102 + AT_rich Low_complexity Low_complexity 1 42 0 229 361 14 0 chr13 21529051 21529123 -98215775 + MIR SINE MIR 39 111 -97 2144 117 0 32 chr13 21530264 21530580 -98214318 - AluSx SINE Alu -6 306 1 362 333 74 0 chr13 21530771 21530906 -98213992 + MIR SINE MIR 21 165 -97 187 259 103 0 chr13 21531000 21531058 -98213840 + MIR SINE MIR 187 250 -12 2729 36 0 0 chr13 21531541 21531850 -98213048 + AluY SINE Alu 1 309 -2 518 316 111 21 chr13 21532420 21532981 -98211917 - L2 LINE L2 -54 3259 2636 304 314 98 20 chr13 21533068 21533170 -98211728 - L2 LINE L2 -20 3252 3143 192 40 0 0 chr13 21534206 21534231 -98210667 + (CA)n Simple_repeat Simple_repeat 2 26 0 264 59 0 0 chr13 21534254 21534288 -98210610 + (TG)n Simple_repeat Simple_repeat 2 35 0 588 333 74 20 chr13 21534302 21534693 -98210205 + L1M4 LINE L1 2701 3112 -3034 763 276 71 4 chr13 21534712 21534937 -98209961 + MIR SINE MIR 20 259 -3 192 77 0 0 chr13 21534976 21535002 -98209896 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 2072 65 4 11 chr13 21535004 21535267 -98209631 - AluY SINE Alu -17 294 34 1897 114 4 0 chr13 21535405 21535668 -98209230 - AluY SINE Alu -47 264 1 531 280 71 21 chr13 21535714 21536039 -98208859 + L1M4 LINE L1 4634 4974 -1172 664 298 53 26 chr13 21536039 21536267 -98208631 - L2 LINE L2 -1385 1929 1696 308 277 53 0 chr13 21536310 21536404 -98208494 - L2 LINE L2 -1605 1709 1611 987 286 121 54 chr13 21536404 21536809 -98208089 - L2 LINE L2 -2636 678 247 215 294 0 0 chr13 21536819 21536870 -98208028 - L2 LINE L2 -3186 128 78 561 301 75 38 chr13 21537369 21537767 -98207131 - MLT1J2 LTR MaLR -37 413 1 2258 68 57 0 chr13 21537947 21538227 -98206671 + AluY SINE Alu 1 296 -15 3410 141 30 7 chr13 21538424 21538998 -98205900 - L1PA15 LINE L1 -1 6164 5578 21 71 0 0 chr13 21539182 21539224 -98205674 + AT_rich Low_complexity Low_complexity 1 42 0 1067 259 94 2 chr13 21539280 21539778 -98205120 + MER114 LTR ERV 22 565 -83 233 221 143 13 chr13 21539806 21539883 -98205015 - MIR SINE MIR -98 164 78 390 101 101 0 chr13 21539955 21540024 -98204874 - LTR12 LTR ERV1 -288 426 351 242 155 14 99 chr13 21540026 21540097 -98204801 - LTR30 LTR ERV1 -108 614 550 1048 116 233 5 chr13 21540097 21540312 -98204586 - LTR12 LTR ERV1 -450 264 1 233 398 0 0 chr13 21540836 21540949 -98203949 - MIR SINE MIR -66 142 30 2057 148 43 6 chr13 21541401 21541753 -98203145 - MLT1A1 LTR MaLR 0 365 1 1469 114 18 35 chr13 21542112 21542339 -98202559 - AluSg/x SINE Alu -11 299 77 1917 243 90 29 chr13 21543334 21543509 -98201389 - L1ME2 LINE L1 -16 6148 5985 2184 113 13 0 chr13 21543509 21543810 -98201088 - AluSq SINE Alu -8 305 1 1917 243 90 29 chr13 21543810 21544465 -98200433 - L1ME2 LINE L1 -179 5985 5254 632 137 73 8 chr13 21544484 21544608 -98200290 - MLT1D LTR MaLR -5 500 369 2246 114 3 0 chr13 21544619 21544925 -98199973 - AluSx SINE Alu -5 307 1 298 174 23 12 chr13 21544934 21545020 -98199878 - L1ME2 LINE L1 -981 5165 5079 1483 267 69 6 chr13 21545056 21545719 -98199179 - L1M4 LINE L1 -3191 2955 2251 2216 75 0 3 chr13 21546004 21546339 -98198559 - AluY SINE Alu 0 334 1 2255 57 54 3 chr13 21546852 21547148 -98197750 + AluY SINE Alu 1 311 0 2480 90 0 0 chr13 21547416 21547717 -98197181 + AluSq SINE Alu 1 301 -12 2168 133 0 0 chr13 21549418 21549719 -98195179 - AluSx SINE Alu -11 301 1 785 198 6 18 chr13 21549805 21549972 -98194926 - MER20 DNA MER1_type -54 165 1 949 249 105 32 chr13 21550080 21550707 -98194191 - Charlie2a DNA MER1_type -1174 1688 1016 247 376 38 55 chr13 21550747 21550935 -98193963 - L2 LINE L2 -445 2869 2686 2597 33 0 3 chr13 21550935 21551234 -98193664 + AluY SINE Alu 1 298 -13 247 376 38 55 chr13 21551234 21551335 -98193563 - L2 LINE L2 -628 2686 2585 262 303 111 49 chr13 21551339 21551652 -98193246 - L2 LINE L2 -1001 2313 1974 3734 122 30 38 chr13 21551652 21551946 -98192952 + MER39B LTR ERV1 1 296 -357 2282 73 0 23 chr13 21551946 21552247 -98192651 + AluY SINE Alu 1 294 -17 3734 122 30 38 chr13 21552247 21552610 -98192288 + MER39B LTR ERV1 296 653 0 262 303 111 49 chr13 21552610 21552646 -98192252 - L2 LINE L2 -1340 1974 1942 2391 80 0 10 chr13 21552755 21553069 -98191829 - AluY SINE Alu 0 311 1 328 211 144 39 chr13 21553839 21553943 -98190955 - MIR3 SINE MIR -31 177 63 546 199 199 50 chr13 21554516 21554737 -98190161 - MIR SINE MIR -5 257 4 230 310 129 9 chr13 21555226 21555342 -98189556 - L2 LINE L2 -1364 1950 1821 2189 126 0 3 chr13 21555900 21556193 -98188705 - AluSx SINE Alu -20 292 1 2203 101 0 10 chr13 21556989 21557287 -98187611 - AluSx SINE Alu -17 295 1 263 259 145 48 chr13 21557608 21557660 -98187238 - MIR SINE MIR 0 262 216 2265 103 0 3 chr13 21557660 21557960 -98186938 - AluSx SINE Alu -13 299 1 263 259 145 48 chr13 21557960 21558073 -98186825 - MIR SINE MIR -46 216 81 299 313 46 23 chr13 21558160 21558291 -98186607 + L2 LINE L2 1459 1592 -1722 331 328 62 6 chr13 21558299 21558476 -98186422 + L2 LINE L2 1791 1977 -1337 2056 129 35 30 chr13 21558531 21558903 -98185995 + THE1C LTR MaLR 2 375 0 240 111 0 0 chr13 21559138 21559174 -98185724 + (A)n Simple_repeat Simple_repeat 1 36 0 2620 42 3 3 chr13 21560152 21560463 -98184435 - AluY SINE Alu 0 311 1 2686 150 65 7 chr13 21560722 21561368 -98183530 - L1MC/D LINE L1 -425 5817 5147 2349 90 3 3 chr13 21561466 21561778 -98183120 - AluSp SINE Alu -1 312 1 366 260 65 88 chr13 21561862 21561970 -98182928 - HAL1b LINE L1 -239 1109 1000 2277 84 3 13 chr13 21561970 21562279 -98182619 - AluY SINE Alu -5 306 1 366 260 65 88 chr13 21562279 21562554 -98182344 - HAL1b LINE L1 -348 1000 735 207 0 0 0 chr13 21562873 21562896 -98182002 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2186 74 0 18 chr13 21562896 21563181 -98181717 - AluSx SINE Alu -32 280 1 1724 130 3 34 chr13 21563624 21563916 -98180982 + AluSx SINE Alu 3 285 -27 492 62 0 0 chr13 21563916 21563980 -98180918 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 2525 53 3 0 chr13 21564433 21564737 -98180161 + AluY SINE Alu 1 305 -6 281 326 112 23 chr13 21564758 21565701 -98179197 - L1M4 LINE L1 -2155 3991 2965 493 111 89 0 chr13 21565718 21565808 -98179090 + MER4A LTR ERV1 1 98 -566 1706 113 11 82 chr13 21565808 21566180 -98178718 + MER4A LTR ERV1 261 664 0 806 301 98 48 chr13 21566184 21566699 -98178199 - L1M4 LINE L1 -3200 2946 2385 2205 110 3 0 chr13 21566699 21566989 -98177909 + AluSq SINE Alu 2 292 -21 806 301 98 48 chr13 21566989 21567180 -98177718 - L1M4 LINE L1 -3761 2385 2205 25 51 0 0 chr13 21568734 21568773 -98176125 + AT_rich Low_complexity Low_complexity 1 39 0 4740 73 46 0 chr13 21569071 21569702 -98175196 - PABL_A LTR ERV1 0 660 1 602 186 0 8 chr13 21569715 21569833 -98175065 - L1P4 LINE L1 -402 5764 5648 * 7769 222 43 21 chr13 21569822 21571323 -98173575 - L1 LINE L1 -836 5546 4079 2340 89 0 13 chr13 21571323 21571626 -98173272 + AluY SINE Alu 1 299 -12 7769 222 43 21 chr13 21571626 21571782 -98173116 - L1 LINE L1 -2303 4079 3928 2153 106 0 3 chr13 21571782 21572090 -98172808 + AluSq SINE Alu 1 307 0 7769 222 43 21 chr13 21572090 21572732 -98172166 - L1 LINE L1 -2454 3928 3191 2063 178 70 5 chr13 21572732 21573130 -98171768 - MSTB LTR MaLR -2 424 1 7769 222 43 21 chr13 21573130 21573171 -98171727 - L1 LINE L1 -3191 3191 3152 2311 87 3 7 chr13 21573181 21573490 -98171408 - AluY SINE Alu -3 308 1 284 393 33 7 chr13 21573492 21573642 -98171256 - MIR SINE MIR -49 213 60 1941 154 106 23 chr13 21573951 21574346 -98170552 + MSTA LTR MaLR 1 428 0 2038 147 76 45 chr13 21574654 21575075 -98169823 + Tigger2a DNA MER2_type 1 434 0 1505 223 0 3 chr13 21575726 21576008 -98168890 + AluJo SINE Alu 1 281 -31 225 0 0 0 chr13 21576013 21576038 -98168860 + (T)n Simple_repeat Simple_repeat 1 25 0 643 197 74 18 chr13 21576059 21576263 -98168635 - L1 LINE L1 -3855 2527 2312 573 211 0 49 chr13 21576270 21576412 -98168486 - FAM SINE Alu -2 47 1 7294 215 57 31 chr13 21576425 21576683 -98168215 + L1M3 LINE L1 3001 3251 -2932 2213 101 3 0 chr13 21576683 21576971 -98167927 + AluY SINE Alu 13 301 -10 7294 215 57 31 chr13 21576971 21578318 -98166580 + L1M3 LINE L1 3251 4709 -1474 2341 107 0 0 chr13 21578318 21578618 -98166280 - AluSg SINE Alu -10 300 1 7294 215 57 31 chr13 21578618 21579526 -98165372 + L1M3 LINE L1 4709 5592 -591 485 131 12 0 chr13 21580296 21580380 -98164518 + MER61E LTR ERV1 1 85 -484 1019 204 139 15 chr13 21580607 21580945 -98163953 + LTR25 LTR ERV1 415 794 0 399 324 87 18 chr13 21580990 21581209 -98163689 + MIR SINE MIR 13 246 -16 432 0 0 0 chr13 21581499 21581547 -98163351 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 318 204 21 43 chr13 21582670 21582763 -98162135 + L1ME4a LINE L1 5872 5962 -159 25 95 0 0 chr13 21582908 21582982 -98161916 + AT_rich Low_complexity Low_complexity 1 74 0 549 311 76 62 chr13 21583018 21583373 -98161525 + L1M4 LINE L1 2364 2730 -3416 1958 138 0 10 chr13 21583373 21583670 -98161228 - AluSx SINE Alu -18 294 1 549 311 76 62 chr13 21583670 21583815 -98161083 + L1M4 LINE L1 2730 2871 -3275 843 256 78 20 chr13 21583874 21584362 -98160536 + L1M4 LINE L1 2988 3503 -2643 1609 110 17 8 chr13 21584502 21584739 -98160159 + AluSp SINE Alu 46 317 0 223 91 0 0 chr13 21584739 21584772 -98160126 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 184 191 119 0 chr13 21585731 21585773 -98159125 - L2 LINE L2 -9 3263 3217 238 296 14 0 chr13 21585804 21585875 -98159023 - L2 LINE L2 0 3272 3201 181 304 80 40 chr13 21586128 21586253 -98158645 - L2 LINE L2 -483 2831 2702 329 169 108 0 chr13 21586336 21586401 -98158497 + MER57A LTR ERV1 1 72 -331 605 258 189 23 chr13 21586450 21586807 -98158091 - L1M4 LINE L1 -841 5305 4886 2019 145 0 7 chr13 21586833 21587136 -98157762 + AluSx SINE Alu 1 301 -11 2458 76 3 0 chr13 21587286 21587588 -98157310 + AluY SINE Alu 1 303 -8 2347 82 0 14 chr13 21587971 21588264 -98156634 + AluSg SINE Alu 1 289 -21 188 204 204 0 chr13 21588715 21588769 -98156129 - L2 LINE L2 -8 3264 3200 186 43 0 0 chr13 21588948 21588971 -98155927 + (CA)n Simple_repeat Simple_repeat 1 23 0 753 257 18 0 chr13 21589062 21589233 -98155665 + MER5B DNA MER1_type 5 178 0 351 261 34 0 chr13 21589250 21589338 -98155560 + MER5A DNA MER1_type 14 104 -85 652 227 0 65 chr13 21589437 21589591 -98155307 + MLT1D LTR MaLR 3 146 -359 1445 232 171 5 chr13 21589594 21590067 -98154831 - L1MC4 LINE L1 -666 7376 6983 258 32 0 0 chr13 21590067 21590098 -98154800 + (CA)n Simple_repeat Simple_repeat 1 31 0 1445 232 171 5 chr13 21590098 21590215 -98154683 - L1MC4 LINE L1 -1059 6983 6540 1320 114 18 44 chr13 21590444 21590671 -98154227 + THE1C LTR MaLR 155 375 0 443 265 134 53 chr13 21590678 21590999 -98153899 - MLT1J2 LTR MaLR -31 419 73 2372 81 3 3 chr13 21591027 21591335 -98153563 - AluY SINE Alu -3 308 1 1935 103 24 0 chr13 21591335 21591626 -98153272 - AluY SINE Alu -13 298 1 25 51 0 0 chr13 21591818 21591857 -98153041 + AT_rich Low_complexity Low_complexity 1 39 0 968 122 0 0 chr13 21591930 21592053 -98152845 - FLAM_C SINE Alu -10 123 1 1770 167 3 32 chr13 21592071 21592382 -98152516 - AluJo SINE Alu -10 302 1 214 147 0 0 chr13 21593938 21593972 -98150926 + (CTG)n Simple_repeat Simple_repeat 2 35 0 28972 61 4 1 chr13 21595608 21599289 -98145609 + L1PA6 LINE L1 1552 5246 -900 1098 119 6 6 chr13 21599311 21599471 -98145427 + L1PA6 LINE L1 5985 6144 -10 7289 61 15 1 chr13 21599474 21600358 -98144540 + L1PA6 LINE L1 5254 6149 -5 1810 146 11 13 chr13 21600359 21600815 -98144083 - L1PBb LINE L1 -5006 1857 1403 441 283 35 12 chr13 21600830 21601003 -98143895 - L1PBb LINE L1 -6684 179 3 1180 180 0 0 chr13 21601027 21601216 -98143682 - MSTB LTR MaLR -237 189 1 7307 183 137 1 chr13 21601221 21602670 -98142228 - MSTB-int LTR MaLR -6 1645 1 2574 169 29 2 chr13 21602670 21603085 -98141813 - MSTB LTR MaLR 0 426 1 853 225 19 0 chr13 21603480 21603640 -98141258 - FRAM SINE Alu -3 163 1 394 328 40 35 chr13 21603779 21603953 -98140945 + MIR3 SINE MIR 6 180 -28 2506 74 0 0 chr13 21604021 21604332 -98140566 - AluY SINE Alu 0 311 1 202 122 73 24 chr13 21604434 21604475 -98140423 + L2 LINE L2 3269 3311 -2 1175 165 64 23 chr13 21605023 21605241 -98139657 - AluJo SINE Alu -85 227 1 510 124 90 0 chr13 21608690 21608779 -98136119 + MER4A LTR ERV1 2 98 -566 1553 157 6 52 chr13 21608779 21608953 -98135945 + MER4A LTR ERV1 261 442 -222 2325 103 3 0 chr13 21608953 21609255 -98135643 - AluSx SINE Alu -9 303 1 1553 157 6 52 chr13 21609255 21609441 -98135457 + MER4A LTR ERV1 442 663 -1 274 303 25 33 chr13 21609520 21609642 -98135256 + MIR SINE MIR 92 212 -50 304 281 27 23 chr13 21610603 21611010 -98133888 - ALR/Alpha Satellite centromeric -41 408 1 2302 93 3 0 chr13 21611069 21611370 -98133528 - AluSp SINE Alu -11 302 1 432 256 20 20 chr13 21611437 21611647 -98133251 - ALR/Alpha Satellite centromeric 0 210 1 251 265 48 42 chr13 21611921 21612087 -98132811 - ALR/Alpha Satellite centromeric -5 167 1 352 268 36 33 chr13 21612196 21612563 -98132335 - ALR/Alpha Satellite centromeric -6 368 1 2095 113 17 0 chr13 21613123 21613414 -98131484 - AluSq SINE Alu -15 298 3 515 202 52 88 chr13 21613422 21613605 -98131293 - L1M4 LINE L1 -2884 3262 3091 2127 97 3 7 chr13 21613605 21613894 -98131004 - AluSx SINE Alu -24 288 1 515 202 52 88 chr13 21613894 21613982 -98130916 - L1M4 LINE L1 -3055 3091 3001 857 227 92 14 chr13 21613982 21614264 -98130634 - MER113 DNA MER1_type? -190 331 28 2341 112 0 3 chr13 21614559 21614872 -98130026 + AluSx SINE Alu 1 312 0 242 358 74 51 chr13 21614923 21615275 -98129623 + L3 LINE CR1 296 655 -922 2366 75 0 0 chr13 21615574 21615869 -98129029 - AluY SINE Alu -16 295 1 2138 120 3 3 chr13 21616614 21616913 -98127985 + AluSp SINE Alu 1 299 -14 2032 149 0 7 chr13 21617176 21617484 -98127414 + AluSx SINE Alu 1 306 -6 2441 57 0 10 chr13 21617617 21617914 -98126984 - AluY SINE Alu -17 294 1 1871 94 106 0 chr13 21620212 21620487 -98124411 + AluSp SINE Alu 1 304 -9 2403 70 6 13 chr13 21620488 21620801 -98124097 + AluY SINE Alu 1 311 0 313 145 0 0 chr13 21620862 21620932 -98123966 - Alu SINE Alu -2 298 247 22 56 0 0 chr13 21621279 21621315 -98123583 + AT_rich Low_complexity Low_complexity 1 36 0 1251 88 57 0 chr13 21621593 21621785 -98123113 + L1PB3 LINE L1 5531 5733 -421 1176 126 0 0 chr13 21621785 21621959 -98122939 + AluY SINE Alu 136 309 -2 356 123 0 84 chr13 21621959 21622042 -98122856 + L1PB3 LINE L1 5727 5791 -360 33 0 0 0 chr13 21622042 21622075 -98122823 + AT_rich Low_complexity Low_complexity 1 33 0 2569 110 0 46 chr13 21622099 21622490 -98122408 + L1PB3 LINE L1 5782 6154 0 22 35 0 0 chr13 21622646 21622675 -98122223 + AT_rich Low_complexity Low_complexity 1 29 0 230 215 0 15 chr13 21622756 21622821 -98122077 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 21 0 0 0 chr13 21622999 21623020 -98121878 + AT_rich Low_complexity Low_complexity 1 21 0 1496 173 63 70 chr13 21623975 21624276 -98120622 + AluJb SINE Alu 1 299 -13 238 253 93 47 chr13 21624658 21624808 -98120090 + L1MC5 LINE L1 7757 7913 -48 411 268 328 0 chr13 21626137 21626320 -98118578 - MIR SINE MIR -14 248 6 882 216 10 113 chr13 21627201 21627346 -98117552 + MER21B LTR ERV1 1 103 -760 2472 80 0 0 chr13 21627346 21627657 -98117241 - AluY SINE Alu 0 311 1 882 216 10 113 chr13 21627657 21627803 -98117095 + MER21B LTR ERV1 103 262 -601 * 1007 147 153 1 chr13 21627800 21628127 -98116771 + MER31B LTR ERV1 47 466 0 2114 128 0 3 chr13 21628169 21628465 -98116433 + AluSx SINE Alu 1 295 -17 1595 221 75 107 chr13 21628534 21629255 -98115643 + MER31B-int LTR ERV1 42 739 -4197 5304 178 106 85 chr13 21629262 21629639 -98115259 + MER31B-int LTR ERV1 883 1251 -3685 2220 123 0 0 chr13 21629639 21629940 -98114958 + AluSx SINE Alu 1 301 -11 5304 178 106 85 chr13 21629940 21631321 -98113577 + MER31B-int LTR ERV1 1251 2678 -2258 2896 65 4 152 chr13 21631328 21631507 -98113391 - MER4E LTR ERV1 -7 759 555 2333 94 3 0 chr13 21631507 21631805 -98113093 + AluSp SINE Alu 1 299 -14 2896 65 4 152 chr13 21631805 21631848 -98113050 - MER4E LTR ERV1 -211 555 507 2242 118 0 3 chr13 21631848 21632153 -98112745 + AluSq SINE Alu 1 304 -9 2896 65 4 152 chr13 21632153 21632427 -98112471 - MER4E LTR ERV1 -259 507 341 1454 87 82 19 chr13 21632427 21632635 -98112263 + AluSc SINE Alu 77 297 -12 2896 65 4 152 chr13 21632635 21632663 -98112235 - MER4E LTR ERV1 -425 341 311 2626 147 40 4 chr13 21632663 21632825 -98112073 + LTR19A LTR ERV1 1 156 -330 3753 111 24 29 chr13 21632825 21633375 -98111523 + LTR10B LTR ERV1 1 547 0 2626 147 40 4 chr13 21633375 21633681 -98111217 + LTR19A LTR ERV1 156 486 0 1989 92 86 3 chr13 21633670 21633698 -98111200 - MER4E LTR ERV1 -438 328 304 * 180 0 0 0 chr13 21633698 21633718 -98111180 + (GGAA)n Simple_repeat Simple_repeat 1 20 0 1989 92 86 3 chr13 21633718 21633992 -98110906 - MER4E LTR ERV1 -462 304 1 2535 61 0 0 chr13 21634006 21634317 -98110581 - AluY SINE Alu 0 311 1 1532 247 27 25 chr13 21634318 21634760 -98110138 + MER31B-int LTR ERV1 2675 3117 -1819 470 156 89 0 chr13 21634765 21634855 -98110043 + MER4A LTR ERV1 1 98 -566 1671 148 162 73 chr13 21634855 21635226 -98109672 + MER4A LTR ERV1 261 664 0 2400 144 103 135 chr13 21635227 21635496 -98109402 + MER31B-int LTR ERV1 3120 3396 -1540 2206 101 7 0 chr13 21635496 21635792 -98109106 + AluY SINE Alu 1 298 -13 2400 144 103 135 chr13 21635792 21636285 -98108613 + MER31B-int LTR ERV1 3396 3858 -1078 229 203 63 51 chr13 21636285 21636364 -98108534 + MLT1A2 LTR MaLR 237 316 -58 795 195 95 0 chr13 21636364 21636493 -98108405 + MER31B-int LTR ERV1 3939 4089 -847 2239 98 3 10 chr13 21636493 21636789 -98108109 + AluSg SINE Alu 1 294 -16 795 195 95 0 chr13 21636789 21636828 -98108070 + MER31B-int LTR ERV1 4089 4123 -813 7021 95 24 1 chr13 21636833 21637844 -98107054 - L1P LINE L1 -2468 3678 2645 11363 93 18 1 chr13 21637845 21640135 -98104763 + L1PA7 LINE L1 3815 6149 -5 229 173 93 27 chr13 21640241 21640316 -98104582 + L1MB7 LINE L1 6105 6184 0 648 208 44 25 chr13 21640326 21640485 -98104413 + MER31B-int LTR ERV1 4118 4279 -657 357 152 0 38 chr13 21640486 21640565 -98104333 + LTR37A LTR ERV1 41 116 -310 886 135 122 80 chr13 21640738 21640787 -98104111 + MER31B-int LTR ERV1 4673 4718 -218 2543 65 0 3 chr13 21640787 21641097 -98103801 - AluY SINE Alu -2 309 1 886 135 122 80 chr13 21641097 21641284 -98103614 + MER31B-int LTR ERV1 4718 4919 -17 1604 227 55 23 chr13 21641287 21641723 -98103175 + MER31B LTR ERV1 7 456 -10 2478 54 10 0 chr13 21642282 21642578 -98102320 + AluY SINE Alu 1 299 -12 251 322 15 18 chr13 21642581 21642768 -98102130 - ALR/Alpha Satellite centromeric -5 186 1 298 280 50 38 chr13 21642783 21643037 -98101861 - ALR/Alpha Satellite centromeric -5 257 1 1746 166 7 0 chr13 21646432 21646728 -98098170 + AluSx SINE Alu 1 298 -14 451 317 76 40 chr13 21647013 21647157 -98097741 - L1M4 LINE L1 -832 5314 5177 1889 143 31 3 chr13 21647157 21647450 -98097448 - AluJo SINE Alu -11 301 1 451 317 76 40 chr13 21647450 21647804 -98097094 - L1M4 LINE L1 -969 5177 4798 651 76 0 0 chr13 21647985 21648077 -98096821 - L1P5 LINE L1 -658 5496 5405 11894 110 18 10 chr13 21648431 21648450 -98096448 + Tigger1 DNA MER2_type 29 46 -2372 2487 55 0 10 chr13 21648450 21648759 -98096139 - AluY SINE Alu -5 306 1 11894 110 18 10 chr13 21648759 21650279 -98094619 + Tigger1 DNA MER2_type 46 1586 -832 2161 123 7 0 chr13 21650279 21650579 -98094319 + AluSq SINE Alu 1 302 -11 11894 110 18 10 chr13 21650579 21650783 -98094115 + Tigger1 DNA MER2_type 1586 1787 -631 347 44 0 0 chr13 21650781 21650826 -98094072 - AluY SINE Alu -6 296 252 * 1068 70 0 0 chr13 21650828 21650957 -98093941 - AluY SINE Alu -182 129 1 1021 150 17 11 chr13 21650957 21651137 -98093761 + Tigger1 DNA MER2_type 2238 2418 0 1278 134 4 78 chr13 21652921 21653153 -98091745 + AluJo SINE Alu 85 299 -13 22 88 0 0 chr13 21653392 21653449 -98091449 + AT_rich Low_complexity Low_complexity 1 57 0 1304 114 5 0 chr13 21653611 21653795 -98091103 + AluSq SINE Alu 129 313 0 360 0 0 0 chr13 21654541 21654581 -98090317 + (TG)n Simple_repeat Simple_repeat 1 40 0 236 264 186 8 chr13 21654755 21654884 -98090014 + MIR SINE MIR 2 153 -109 276 264 136 16 chr13 21655026 21655151 -98089747 - L3 LINE CR1 -264 1313 1174 480 272 63 32 chr13 21655213 21655371 -98089527 + MIR SINE MIR 82 244 -18 228 67 0 0 chr13 21655383 21655413 -98089485 + (TTA)n Simple_repeat Simple_repeat 1 30 0 264 59 0 0 chr13 21655752 21655786 -98089112 + (TC)n Simple_repeat Simple_repeat 2 35 0 243 0 0 0 chr13 21655786 21655813 -98089085 + (CA)n Simple_repeat Simple_repeat 1 27 0 202 211 19 0 chr13 21656464 21656516 -98088382 + GA-rich Low_complexity Low_complexity 4 56 0 1743 113 132 4 chr13 21657193 21657458 -98087440 + AluSx SINE Alu 1 299 -13 1814 154 48 3 chr13 21658632 21658964 -98085934 - L1MB7 LINE L1 -16 6168 5822 1242 119 0 0 chr13 21659005 21659165 -98085733 - AluSx SINE Alu -152 160 1 184 257 57 43 chr13 21659681 21659751 -98085147 - L2 LINE L2 -86 3186 3116 324 303 119 88 chr13 21660240 21660953 -98083945 - L1M2 LINE L1 -5420 1429 695 2173 73 12 76 chr13 21662109 21662438 -98082460 - AluSc SINE Alu -1 308 1 253 270 14 27 chr13 21663448 21663522 -98081376 - L2 LINE L2 -999 2315 2243 180 271 62 0 chr13 21663586 21663634 -98081264 - L2 LINE L2 -18 3254 3204 233 111 22 89 chr13 21663929 21663974 -98080924 - Alu SINE Alu -176 126 85 313 276 0 11 chr13 21664158 21664245 -98080653 + (TATG)n Simple_repeat Simple_repeat 3 88 0 1902 129 0 85 chr13 21664912 21665253 -98079645 - AluSx SINE Alu 0 312 1 1430 208 20 60 chr13 21665268 21665668 -98079230 + L1MA10 LINE L1 5950 6333 -1 2154 127 0 0 chr13 21665776 21666075 -98078823 + AluY SINE Alu 1 299 -12 2243 104 0 3 chr13 21666089 21666388 -98078510 + AluY SINE Alu 1 298 -13 2248 88 0 3 chr13 21666935 21667246 -98077652 + AluY SINE Alu 1 310 0 369 109 0 0 chr13 21667827 21667882 -98077016 + (CCAA)n Simple_repeat Simple_repeat 1 55 0 2327 99 3 0 chr13 21668040 21668352 -98076546 + AluSq SINE Alu 1 313 0 222 242 39 102 chr13 21668990 21669118 -98075780 - MIR3 SINE MIR -6 202 83 1143 113 19 0 chr13 21670963 21671122 -98073776 - AluSx SINE Alu -150 162 1 936 132 0 0 chr13 21671150 21671286 -98073612 + AluSq/x SINE Alu 1 136 -177 2519 63 0 0 chr13 21671286 21671586 -98073312 + AluY SINE Alu 1 300 -11 22 0 0 0 chr13 21671787 21671809 -98073089 + AT_rich Low_complexity Low_complexity 1 22 0 252 341 57 11 chr13 21672269 21672357 -98072541 - L2 LINE L2 -5 3267 3176 2283 98 3 16 chr13 21672550 21672865 -98072033 + AluSx SINE Alu 2 312 0 213 39 0 0 chr13 21673600 21673626 -98071272 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 2111 112 42 0 chr13 21673765 21674051 -98070847 - AluSx SINE Alu -14 298 1 207 0 0 0 chr13 21674140 21674163 -98070735 + (TA)n Simple_repeat Simple_repeat 1 23 0 2304 82 0 60 chr13 21674562 21674893 -98070005 + AluY SINE Alu 1 311 0 2981 287 75 38 chr13 21675066 21675799 -98069099 + L1MC4a LINE L1 2278 2982 -3164 2122 139 0 3 chr13 21675799 21676100 -98068798 + AluSx SINE Alu 1 300 -12 2981 287 75 38 chr13 21676100 21677750 -98067148 + L1MC4a LINE L1 2982 4570 -1576 1515 124 55 0 chr13 21677750 21677968 -98066930 - MER30 DNA MER1_type 0 230 1 2981 287 75 38 chr13 21677968 21678056 -98066842 + L1MC4a LINE L1 4570 4653 -1493 2114 118 35 0 chr13 21678056 21678344 -98066554 - AluSx SINE Alu -14 298 1 2981 287 75 38 chr13 21678344 21679111 -98065787 + L1MC4a LINE L1 4653 4950 -1196 2545 52 3 0 chr13 21679111 21679418 -98065480 + AluY SINE Alu 1 308 -3 2981 287 75 38 chr13 21679418 21679885 -98065013 + L1MC4a LINE L1 4950 5398 -748 1328 164 36 5 chr13 21682327 21682547 -98062351 - MSTB LTR MaLR 0 426 200 2530 111 24 26 chr13 21682577 21682956 -98061942 - L1PB3 LINE L1 0 6870 6493 1856 74 18 0 chr13 21682999 21683228 -98061670 - AluSx SINE Alu -17 295 63 10798 195 51 22 chr13 21683228 21683686 -98061212 - L1PB3 LINE L1 -370 6500 6057 2177 123 0 3 chr13 21683686 21683987 -98060911 - AluSc SINE Alu -9 300 1 10798 195 51 22 chr13 21683987 21688006 -98056892 - L1PB3 LINE L1 -813 6057 1888 15589 66 7 4 chr13 21688020 21690205 -98054693 + L1P LINE L1 1425 3616 -2530 273 280 76 49 chr13 21690942 21691111 -98053787 - MIR SINE MIR -71 191 17 246 230 0 87 chr13 21691273 21691400 -98053498 + MLT1J LTR MaLR 110 289 -326 266 189 67 11 chr13 21691527 21691617 -98053281 + MLT1L LTR MaLR 489 583 -32 25 51 0 0 chr13 21691906 21691945 -98052953 + AT_rich Low_complexity Low_complexity 1 39 0 554 172 26 9 chr13 21691953 21692069 -98052829 - L1MB4 LINE L1 -12 6168 6051 726 243 41 4 chr13 21692609 21692877 -98052021 - L1M4 LINE L1 -2770 3376 3099 * 2916 184 56 6 chr13 21692873 21693520 -98051378 - L1 LINE L1 -2193 3953 3275 345 329 0 12 chr13 21694018 21694179 -98050719 + L1ME3A LINE L1 6000 6158 -12 247 200 40 40 chr13 21694232 21694307 -98050591 + MARNA DNA Mariner 368 442 -144 21 0 0 0 chr13 21694541 21694562 -98050336 + AT_rich Low_complexity Low_complexity 1 21 0 2186 110 0 31 chr13 21694684 21695002 -98049896 - AluSx SINE Alu -4 308 1 21 36 0 0 chr13 21695023 21695051 -98049847 + AT_rich Low_complexity Low_complexity 1 28 0 319 301 65 0 chr13 21696323 21696446 -98048452 + MER94 DNA DNA 2 132 -2 31 82 0 0 chr13 21696492 21696565 -98048333 + AT_rich Low_complexity Low_complexity 1 73 0 961 232 50 53 chr13 21701273 21701652 -98043246 - L1ME3A LINE L1 -5 6165 5788 329 264 50 36 chr13 21701659 21701799 -98043099 - MARNA DNA Mariner -197 389 248 2073 119 40 57 chr13 21702208 21702578 -98042320 - THE1B LTR MaLR 0 364 1 270 341 184 30 chr13 21703446 21703950 -98040948 + L2 LINE L2 1621 2202 -1112 432 258 113 25 chr13 21704003 21704162 -98040736 + MIR SINE MIR 3 175 -87 245 262 36 12 chr13 21704444 21704528 -98040370 + L2 LINE L2 2303 2388 -926 226 247 169 26 chr13 21704990 21705067 -98039831 + L2 LINE L2 3163 3250 -22 409 267 153 28 chr13 21705088 21705264 -98039634 + L2 LINE L2 2918 3115 -157 191 350 120 0 chr13 21705569 21705686 -98039212 - MIR SINE MIR -70 192 62 24 53 0 0 chr13 21705863 21705901 -98038997 + AT_rich Low_complexity Low_complexity 1 38 0 271 341 81 32 chr13 21706208 21706331 -98038567 + L2 LINE L2 3116 3244 -28 27 0 0 0 chr13 21706656 21706683 -98038215 + AT_rich Low_complexity Low_complexity 1 27 0 2179 116 0 3 chr13 21707448 21707758 -98037140 + AluSg1 SINE Alu 1 309 0 27 0 0 0 chr13 21707974 21708001 -98036897 + AT_rich Low_complexity Low_complexity 1 27 0 245 167 0 45 chr13 21708550 21708616 -98036282 + CT-rich Low_complexity Low_complexity 2 64 0 2261 100 0 0 chr13 21710187 21710487 -98034411 - AluSg1 SINE Alu -9 300 1 227 328 48 40 chr13 21710969 21711094 -98033804 - MIR3 SINE MIR -48 160 35 1406 148 26 4 chr13 21711226 21711456 -98033442 + MER46A DNA MER2_type 1 235 -1 21 0 0 0 chr13 21711726 21711747 -98033151 + AT_rich Low_complexity Low_complexity 1 21 0 2541 62 7 3 chr13 21711805 21712114 -98032784 + AluY SINE Alu 1 310 -1 185 293 110 0 chr13 21713618 21713700 -98031198 + L3 LINE CR1 559 649 -928 21 0 0 0 chr13 21724369 21724390 -98020508 + AT_rich Low_complexity Low_complexity 1 21 0 726 283 40 4 chr13 21725701 21725977 -98018921 - MER46C DNA MER2_type -52 286 1 2375 95 0 0 chr13 21726897 21727203 -98017695 - AluY SINE Alu -3 308 3 279 277 71 36 chr13 21728425 21728537 -98016361 + MIR SINE MIR 68 145 -63 276 219 167 0 chr13 21728613 21728709 -98016189 + MIR SINE MIR 81 192 -70 237 274 62 60 chr13 21730901 21731063 -98013835 - MIR3 SINE MIR -82 180 15 2019 164 82 9 chr13 21731236 21731663 -98013235 + LTR32 LTR ERVL 9 466 -5 2366 195 28 28 chr13 21732059 21732603 -98012295 + MER44D DNA MER2_type 7 605 0 180 0 0 0 chr13 21733259 21733279 -98011619 + (A)n Simple_repeat Simple_repeat 1 20 0 572 222 8 0 chr13 21733588 21733705 -98011193 - FAM SINE Alu -37 148 31 2193 112 0 7 chr13 21734555 21734859 -98010039 - AluSg SINE Alu -8 302 1 220 222 49 0 chr13 21735366 21735447 -98009451 + (TA)n Simple_repeat Simple_repeat 2 86 0 2831 65 48 83 chr13 21735605 21736065 -98008833 - MLT2A1 LTR ERVL 0 444 1 20047 55 12 10 chr13 21736065 21736671 -98008227 - HERVL-A1 LTR ERVL 0 5654 5051 2115 93 39 0 chr13 21736671 21736951 -98007947 - AluY SINE Alu -20 291 1 20047 55 12 10 chr13 21736951 21739310 -98005588 - HERVL-A1 LTR ERVL -603 5051 2677 353 74 19 0 chr13 21739302 21739356 -98005542 - HERVL-A1 LTR ERVL -5599 55 1 * 355 69 0 52 chr13 21739356 21739414 -98005484 - MLT2A1 LTR ERVL 0 453 399 234 0 0 0 chr13 21739466 21739492 -98005406 + (TA)n Simple_repeat Simple_repeat 1 26 0 341 47 0 0 chr13 21739591 21739634 -98005264 + MLT2A2 LTR ERVL 411 453 0 243 200 0 15 chr13 21739684 21739749 -98005149 + (TA)n Simple_repeat Simple_repeat 1 64 0 2890 68 20 5 chr13 21739750 21740148 -98004750 - MLT2A1 LTR ERVL -40 404 1 2272 126 0 0 chr13 21740410 21740719 -98004179 + AluSx SINE Alu 1 309 -3 1238 180 54 0 chr13 21741126 21741365 -98003533 - L1PB4 LINE L1 -12 6144 5893 742 271 70 11 chr13 21742139 21742412 -98002486 + LTR68 LTR ERV1 1 289 -451 432 287 108 25 chr13 21742452 21742838 -98002060 + L1MEc LINE L1 1595 2092 -809 325 276 24 16 chr13 21743177 21743300 -98001598 + L1MEc LINE L1 2452 2575 -3965 2580 61 0 0 chr13 21743489 21743800 -98001098 + AluY SINE Alu 1 311 0 282 280 81 57 chr13 21744183 21744394 -98000504 + L1M4 LINE L1 3975 4190 -1956 639 144 0 136 chr13 21744466 21744598 -98000300 + FLAM_A SINE Alu 1 114 -19 186 43 0 0 chr13 21744600 21744623 -98000275 + (TC)n Simple_repeat Simple_repeat 1 23 0 729 316 128 46 chr13 21744714 21745010 -97999888 + L1M4 LINE L1 4342 4612 -1534 1996 159 3 0 chr13 21745010 21745300 -97999598 + AluSx SINE Alu 3 293 -19 729 316 128 46 chr13 21745300 21745636 -97999262 + L1M4 LINE L1 4612 5026 -1120 21 0 0 0 chr13 21746839 21746860 -97998038 + AT_rich Low_complexity Low_complexity 1 21 0 249 309 32 35 chr13 21747347 21747661 -97997237 + L1MEc LINE L1 3713 4025 -2515 1024 198 126 0 chr13 21747708 21747825 -97997073 + AluJo SINE Alu 1 102 -210 189 0 0 0 chr13 21747825 21747846 -97997052 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1024 198 126 0 chr13 21747846 21747950 -97996948 + AluJo SINE Alu 102 250 -62 2116 57 0 47 chr13 21748442 21748742 -97996156 + AluY SINE Alu 1 286 -25 1416 117 5 0 chr13 21748744 21748986 -97995912 + AluSg/x SINE Alu 85 327 0 196 222 74 0 chr13 21750530 21750584 -97994314 - MIR SINE MIR -117 145 88 1129 143 38 5 chr13 21750601 21750811 -97994087 - MSTB1 LTR MaLR -24 408 192 226 257 0 57 chr13 21751035 21751140 -97993758 + CT-rich Low_complexity Low_complexity 6 104 0 2218 103 0 7 chr13 21751637 21751937 -97992961 - AluSx SINE Alu -14 298 1 1357 249 38 0 chr13 21751939 21752336 -97992562 - L1M4 LINE L1 -1780 4366 3955 207 0 0 0 chr13 21752336 21752359 -97992539 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1894 82 0 0 chr13 21752371 21752604 -97992294 - AluSc SINE Alu -76 233 1 913 225 10 0 chr13 21752604 21752804 -97992094 - L1MCa LINE L1 -6206 220 19 6565 91 27 21 chr13 21752890 21753842 -97991056 - L1MA2 LINE L1 -8 6296 5332 2071 141 0 16 chr13 21753842 21754147 -97990751 - AluSx SINE Alu -12 300 1 6565 91 27 21 chr13 21754147 21754333 -97990565 - L1MA2 LINE L1 -972 5332 5148 339 309 77 65 chr13 21754336 21754582 -97990316 + L2 LINE L2 3037 3285 -28 469 179 83 36 chr13 21754939 21755107 -97989791 + MER104 DNA MER2_type 2 177 -3 36 0 0 0 chr13 21755147 21755183 -97989715 + AT_rich Low_complexity Low_complexity 1 36 0 2047 88 4 0 chr13 21755510 21755771 -97989127 + AluSc SINE Alu 1 262 -47 3585 107 2 4 chr13 21755772 21756284 -97988614 + MER9 LTR ERVK 1 511 0 278 336 54 0 chr13 21756355 21756504 -97988394 - MIR SINE MIR -50 212 56 25 31 0 0 chr13 21756524 21756556 -97988342 + AT_rich Low_complexity Low_complexity 1 32 0 1515 168 22 16 chr13 21756823 21757145 -97987753 + L1MB3 LINE L1 5859 6182 -1 585 255 130 11 chr13 21758705 21758889 -97986009 - MIR SINE MIR -52 210 5 2182 106 3 7 chr13 21759702 21760003 -97984895 - AluSx SINE Alu -12 300 1 1785 163 101 31 chr13 21761015 21761145 -97983753 - MER65C LTR ERV1 -7 454 335 2243 119 0 0 chr13 21761145 21761439 -97983459 + AluSx SINE Alu 5 298 -14 1785 163 101 31 chr13 21761439 21761732 -97983166 - MER65C LTR ERV1 -126 335 1 951 302 211 34 chr13 21762882 21763806 -97981092 + L2 LINE L2 1747 2834 -480 369 271 31 16 chr13 21764184 21764313 -97980585 + MLT1L LTR MaLR 468 598 -17 2136 112 3 0 chr13 21765498 21765810 -97979088 + AluSc SINE Alu 1 313 0 1142 233 185 75 chr13 21765926 21766509 -97978389 - MLT1E2 LTR MaLR -4 622 4 537 167 17 50 chr13 21766569 21766689 -97978209 + Tigger7 DNA MER2_type 1 116 -617 1845 136 14 32 chr13 21766697 21767043 -97977855 + Tigger7 DNA MER2_type 2248 2587 0 273 353 59 0 chr13 21767369 21767454 -97977444 - MIR SINE MIR -85 123 34 12541 106 12 12 chr13 21767478 21770529 -97974369 + L1P3 LINE L1 1 3071 -3390 1081 197 112 16 chr13 21770665 21770782 -97974116 + AluJo SINE Alu 1 105 -207 189 0 0 0 chr13 21770782 21770803 -97974095 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1081 197 112 16 chr13 21770803 21770934 -97973964 + AluJo SINE Alu 105 273 -39 603 321 105 16 chr13 21770986 21771811 -97973087 + L1MC/D LINE L1 3797 4709 -1437 1769 124 4 0 chr13 21771920 21772020 -97972878 + AluSx SINE Alu 23 121 -191 243 0 0 0 chr13 21772020 21772047 -97972851 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1769 124 4 0 chr13 21772047 21772203 -97972695 + AluSx SINE Alu 121 280 -32 311 221 0 117 chr13 21772361 21772524 -97972374 + L1MC/D LINE L1 4887 5030 -1116 1026 227 74 60 chr13 21772648 21773123 -97971775 + L1MC/D LINE L1 5214 5691 -743 529 287 72 21 chr13 21773206 21773541 -97971357 - L1MEc LINE L1 -6001 395 44 446 247 55 7 chr13 21773585 21773731 -97971167 + Charlie2 DNA MER1_type 169 321 -2461 1078 194 91 142 chr13 21773735 21774165 -97970733 + Charlie2 DNA MER1_type 1854 2216 -646 1102 144 0 0 chr13 21774165 21774353 -97970545 - L1MA5 LINE L1 -2 6298 6111 1078 194 91 142 chr13 21774353 21774822 -97970076 + Charlie2 DNA MER1_type 2216 2707 -155 2348 96 0 16 chr13 21774910 21775222 -97969676 - AluSx SINE Alu -5 307 1 495 201 117 13 chr13 21775285 21775439 -97969459 - L1MD3 LINE L1 -1095 6900 6731 309 279 62 50 chr13 21775442 21775621 -97969277 - L1MDa LINE L1 -5190 1350 1170 2440 52 0 3 chr13 21775703 21775993 -97968905 - AluY SINE Alu -22 289 1 207 0 0 0 chr13 21775994 21776017 -97968881 + (T)n Simple_repeat Simple_repeat 1 23 0 203 356 17 0 chr13 21776861 21776920 -97967978 + L2 LINE L2 3127 3186 -86 2333 78 3 0 chr13 21777075 21777369 -97967529 + AluY SINE Alu 1 295 -16 450 0 0 0 chr13 21777369 21777419 -97967479 + (TA)n Simple_repeat Simple_repeat 2 51 0 403 307 132 15 chr13 21777639 21777844 -97967054 + MIR SINE MIR 28 256 -6 24 0 0 0 chr13 21778123 21778147 -97966751 + AT_rich Low_complexity Low_complexity 1 24 0 1091 123 0 0 chr13 21778475 21778621 -97966277 - AluSg/x SINE Alu -31 281 136 9115 98 12 0 chr13 21778721 21780084 -97964814 + L1P LINE L1 1517 2895 -3251 471 170 0 80 chr13 21780099 21780199 -97964699 + MER20 DNA MER1_type 117 208 -11 2810 100 47 7 chr13 21780199 21780629 -97964269 + L1PA13 LINE L1 5717 6163 0 2045 170 18 0 chr13 21781045 21781375 -97963523 + MER1B DNA MER1_type 1 336 -1 898 183 0 56 chr13 21781442 21781571 -97963327 + MER5A DNA MER1_type 1 121 -68 1887 142 0 17 chr13 21781571 21781901 -97962997 - AluJb SINE Alu 0 325 1 898 183 0 56 chr13 21781901 21781949 -97962949 + MER5A DNA MER1_type 121 170 -19 354 332 124 0 chr13 21782150 21782352 -97962546 - MIR SINE MIR -34 228 2 2276 113 0 0 chr13 21782927 21783227 -97961671 + AluSx SINE Alu 1 300 -12 1273 105 0 0 chr13 21784491 21784662 -97960236 - AluSp SINE Alu -10 303 133 2807 245 56 49 chr13 21784770 21784839 -97960059 - L1MEc LINE L1 -3025 3190 3123 2481 72 13 0 chr13 21784839 21785145 -97959753 - AluY SINE Alu -1 310 1 2807 245 56 49 chr13 21785145 21787326 -97957572 - L1MEc LINE L1 -3092 3123 953 2017 255 19 36 chr13 21787337 21788034 -97956864 - L1MEc LINE L1 -5654 742 58 2386 56 0 3 chr13 21789309 21789621 -97955277 - AluY SINE Alu 0 311 1 2308 86 33 0 chr13 21790627 21790930 -97953968 - AluSp SINE Alu 0 313 1 466 234 2 28 chr13 21791681 21791822 -97953076 - L1ME1 LINE L1 0 6164 6029 223 297 171 9 chr13 21791845 21791956 -97952942 - L2 LINE L2 -1 3312 3184 486 315 64 8 chr13 21791987 21792238 -97952660 + L2 LINE L2 1891 2155 -1159 1000 165 14 14 chr13 21792311 21792529 -97952369 - L1MB3 LINE L1 -7 6176 5959 2526 171 24 4 chr13 21792631 21793129 -97951769 - L1MB3 LINE L1 -208 5963 5456 209 274 88 62 chr13 21793165 21793226 -97951672 + L2 LINE L2 2260 2327 -987 2081 80 0 0 chr13 21793226 21793476 -97951422 - AluY SINE Alu -22 289 40 209 274 88 62 chr13 21793476 21793527 -97951371 + L2 LINE L2 2327 2375 -939 2141 124 10 0 chr13 21793881 21794179 -97950719 - AluSx SINE Alu -11 301 1 9080 172 24 39 chr13 21794685 21796832 -97948066 + L1PA15 LINE L1 3606 5735 -430 2123 108 3 45 chr13 21796832 21797146 -97947752 + AluSx SINE Alu 1 301 -11 9080 172 24 39 chr13 21797146 21797562 -97947336 + L1PA15 LINE L1 5735 6156 -9 21 0 0 0 chr13 21797632 21797653 -97947245 + AT_rich Low_complexity Low_complexity 1 21 0 1447 183 63 0 chr13 21797922 21798190 -97946708 + AluJb SINE Alu 1 285 -27 828 221 232 29 chr13 21798215 21798638 -97946260 - L1ME1 LINE L1 -144 6022 5523 23 54 0 0 chr13 21798991 21799028 -97945870 + AT_rich Low_complexity Low_complexity 1 37 0 262 344 38 6 chr13 21799501 21799661 -97945237 - L1M4 LINE L1 -1999 4147 3983 203 383 43 11 chr13 21799730 21799824 -97945074 + MIR SINE MIR 29 125 -137 308 253 42 0 chr13 21800038 21800133 -97944765 + U6 snRNA snRNA 9 107 0 186 171 0 0 chr13 21800544 21800585 -97944313 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2417 155 67 0 chr13 21803152 21803584 -97941314 - LOR1b LTR ERV1 0 461 1 1908 142 3 26 chr13 21804067 21804369 -97940529 - AluSx SINE Alu -13 299 5 307 309 68 60 chr13 21805170 21805299 -97939599 - L2 LINE L2 -169 3144 3017 2433 130 47 5 chr13 21805299 21805707 -97939191 - MSTA LTR MaLR 0 428 4 307 309 68 60 chr13 21805707 21805842 -97939056 - L2 LINE L2 -296 3017 2878 2404 81 0 0 chr13 21806858 21807156 -97937742 - AluY SINE Alu -13 298 1 778 139 44 0 chr13 21807762 21807899 -97936999 - Tigger5 DNA MER2_type -66 2257 2115 4913 169 20 3 chr13 21809592 21810896 -97934002 - L1MB1 LINE L1 -501 5667 4342 2546 157 34 16 chr13 21810896 21811396 -97933502 + L1MB1 LINE L1 5645 6155 -13 24 0 0 0 chr13 21811397 21811421 -97933477 + AT_rich Low_complexity Low_complexity 1 24 0 21 89 0 0 chr13 21812436 21812492 -97932406 + AT_rich Low_complexity Low_complexity 1 56 0 732 97 0 0 chr13 21812769 21812985 -97931913 + AluSg/x SINE Alu 208 423 0 26 50 0 0 chr13 21813996 21814036 -97930862 + AT_rich Low_complexity Low_complexity 1 40 0 2389 97 0 0 chr13 21814307 21814615 -97930283 + AluY SINE Alu 1 308 -3 903 318 151 14 chr13 21815013 21815587 -97929311 + L2 LINE L2 2386 3049 -223 922 212 74 11 chr13 21815848 21816275 -97928623 - MLT1D LTR MaLR -5 500 3 897 305 88 19 chr13 21816411 21817084 -97927814 + L2 LINE L2 2590 3308 -5 2161 98 3 3 chr13 21817116 21817425 -97927473 - AluSx SINE Alu 0 309 1 2129 70 0 0 chr13 21818443 21818702 -97926196 - AluY SINE Alu -15 296 38 2314 104 0 3 chr13 21818702 21819001 -97925897 - AluSg SINE Alu -12 298 1 406 259 79 44 chr13 21819736 21819964 -97924934 - L1MEd LINE L1 -4911 1208 973 225 233 0 0 chr13 21820326 21820369 -97924529 + L2 LINE L2 3230 3272 0 253 321 81 40 chr13 21820986 21821491 -97923407 + L1ME LINE L1 5357 5882 -239 442 291 108 22 chr13 21823013 21823236 -97921662 + MLT1K LTR MaLR 347 588 0 1139 298 155 40 chr13 21823454 21824721 -97920177 + L2 LINE L2 1892 3308 -5 2206 85 0 7 chr13 21824871 21825152 -97919746 + AluSq SINE Alu 1 279 -34 341 43 21 0 chr13 21825165 21825212 -97919686 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 2340 49 35 0 chr13 21825375 21825663 -97919235 - AluY SINE Alu -13 298 1 23 33 0 0 chr13 21827499 21827529 -97917369 + AT_rich Low_complexity Low_complexity 1 30 0 1948 116 4 0 chr13 21828091 21828358 -97916540 + AluSx SINE Alu 1 268 -44 447 276 138 16 chr13 21828502 21828748 -97916150 + HERVL LTR ERVL 2277 2552 -3102 840 256 47 47 chr13 21828829 21828948 -97915950 + HERVL LTR ERVL 2672 2790 -2206 1872 134 39 20 chr13 21828948 21829254 -97915644 + AluSx SINE Alu 1 312 0 840 256 47 47 chr13 21829254 21829454 -97915444 + HERVL LTR ERVL 2789 2991 -2005 461 305 18 12 chr13 21829595 21829863 -97915035 + HERVL LTR ERVL 3204 3396 -2258 906 335 95 15 chr13 21830058 21830882 -97914016 + HERVL LTR ERVL 3724 4613 -1041 1920 121 0 0 chr13 21832077 21832333 -97912565 + AluSc SINE Alu 1 256 -53 1132 137 197 9 chr13 21832382 21832696 -97912202 + MER65A LTR ERV1 1 445 0 490 247 52 0 chr13 21832697 21832851 -97912047 - LTR16A1 LTR ERVL 0 457 296 21 0 0 0 chr13 21833260 21833281 -97911617 + AT_rich Low_complexity Low_complexity 1 21 0 2340 94 3 0 chr13 21833601 21833899 -97910999 + AluSg SINE Alu 1 299 -11 357 280 87 40 chr13 21834323 21834473 -97910425 - MIR SINE MIR -26 236 80 22 0 0 0 chr13 21836369 21836391 -97908507 + AT_rich Low_complexity Low_complexity 1 22 0 182 79 0 53 chr13 21836777 21836815 -97908083 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr13 21837346 21837368 -97907530 + AT_rich Low_complexity Low_complexity 1 22 0 1236 171 0 9 chr13 21837475 21837697 -97907201 + L1PA15 LINE L1 5944 6163 -2 214 273 283 0 chr13 21838396 21838495 -97906403 - MIR3 SINE MIR -8 200 74 2289 103 0 23 chr13 21839688 21839998 -97904900 + AluSx SINE Alu 1 303 -9 3783 146 26 38 chr13 21840044 21840707 -97904191 - L1MA6 LINE L1 -14 6286 5632 1700 193 18 2 chr13 21840707 21841177 -97903721 + L1M2 LINE L1 2719 3198 -3650 655 298 41 17 chr13 21843364 21843656 -97901242 - HAL1 LINE L1 -723 1784 1486 24 103 0 0 chr13 21845116 21845203 -97899695 + AT_rich Low_complexity Low_complexity 1 87 0 2286 159 3 9 chr13 21845654 21845993 -97898905 + MER1B DNA MER1_type 1 337 0 206 353 104 6 chr13 21846139 21846312 -97898586 + MIR SINE MIR 20 209 -53 462 269 101 71 chr13 21847377 21847780 -97897118 + MLT1K LTR MaLR 146 588 0 408 40 0 0 chr13 21847816 21847866 -97897032 + (TG)n Simple_repeat Simple_repeat 1 50 0 219 36 0 0 chr13 21847865 21847893 -97897005 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2223 77 4 0 chr13 21847894 21848167 -97896731 - AluSc SINE Alu -35 274 1 36 0 0 0 chr13 21848494 21848530 -97896368 + AT_rich Low_complexity Low_complexity 1 36 0 546 179 83 36 chr13 21848570 21848738 -97896160 - MER104 DNA MER2_type -3 177 2 365 309 73 61 chr13 21849095 21849341 -97895557 - L2 LINE L2 -28 3285 3037 7115 91 27 21 chr13 21849344 21849530 -97895368 + L1MA2 LINE L1 5148 5332 -972 2049 141 0 16 chr13 21849530 21849835 -97895063 + AluSx SINE Alu 1 300 -12 7115 91 27 21 chr13 21849835 21850787 -97894111 + L1MA2 LINE L1 5332 6296 -8 999 225 10 0 chr13 21850873 21851073 -97893825 + L1MCa LINE L1 19 220 -6206 1903 82 0 0 chr13 21851073 21851306 -97893592 + AluSc SINE Alu 1 233 -76 207 0 0 0 chr13 21851318 21851341 -97893557 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1538 239 43 5 chr13 21851341 21851738 -97893160 + L1M4 LINE L1 3955 4366 -1780 2213 104 0 7 chr13 21851740 21852039 -97892859 + AluSx SINE Alu 1 297 -15 224 257 0 57 chr13 21852536 21852641 -97892257 + GA-rich Low_complexity Low_complexity 6 104 0 1222 143 38 5 chr13 21852865 21853075 -97891823 + MSTB1 LTR MaLR 192 408 -24 191 168 42 0 chr13 21853092 21853146 -97891752 + MIR SINE MIR 88 146 -62 1417 117 5 0 chr13 21854690 21854932 -97889966 - AluSg/x SINE Alu 0 327 85 2151 57 0 47 chr13 21854934 21855234 -97889664 - AluY SINE Alu -25 286 1 415 280 147 63 chr13 21856937 21857380 -97887518 + L1MB8 LINE L1 580 1059 -5899 1585 173 114 82 chr13 21858340 21858803 -97886095 - LTR12 LTR ERV1 -236 478 1 336 176 96 128 chr13 21859669 21859856 -97885042 - Charlie7 DNA MER1_type -6 2606 2426 836 150 0 0 chr13 21859865 21859998 -97884900 + AluSg/x SINE Alu 177 309 -3 284 276 13 26 chr13 21860001 21860077 -97884821 + L1M4 LINE L1 15 89 -6770 1074 40 0 0 chr13 21860143 21860269 -97884629 - AluY SINE Alu -9 302 177 5628 147 24 10 chr13 21860294 21861085 -97883813 - L1PB3 LINE L1 -39 6115 5337 2471 53 0 3 chr13 21861085 21861385 -97883513 - AluY SINE Alu -12 299 1 5628 147 24 10 chr13 21861385 21861865 -97883033 - L1PB3 LINE L1 -817 5337 4828 2055 87 42 3 chr13 21861865 21862153 -97882745 - AluY SINE Alu -12 299 1 5628 147 24 10 chr13 21862153 21862229 -97882669 - L1PB3 LINE L1 -1326 4828 4755 4930 240 59 43 chr13 21862247 21863695 -97881203 + L1M4 LINE L1 84 1555 -5304 356 0 23 0 chr13 21863783 21863827 -97881071 + (CA)n Simple_repeat Simple_repeat 2 46 0 2851 230 34 77 chr13 21863978 21864880 -97880018 + L1M4 LINE L1 3716 4556 -2401 734 101 10 0 chr13 21864880 21864979 -97879919 + HY3 scRNA scRNA 1 100 -1 2851 230 34 77 chr13 21864979 21865276 -97879622 + L1M4 LINE L1 4556 4864 -2093 461 219 42 8 chr13 21865286 21865405 -97879493 + L1MB8 LINE L1 3283 3405 -3552 329 150 0 0 chr13 21865409 21865469 -97879429 + L1P LINE L1 5369 5428 -728 2927 86 11 11 chr13 21865472 21865845 -97879053 + THE1C LTR MaLR 1 373 -2 3920 159 16 15 chr13 21865847 21866531 -97878367 + L1MA6 LINE L1 5615 6299 -1 2691 214 84 8 chr13 21866549 21867724 -97877174 + L1MB8 LINE L1 5437 6757 -238 582 184 21 35 chr13 21867727 21867868 -97877030 + L1MB8 LINE L1 6850 6988 -1 382 281 50 91 chr13 21868618 21868721 -97876177 + MIR SINE MIR 6 112 -150 2082 94 28 3 chr13 21868721 21869009 -97875889 - AluSp SINE Alu -16 297 3 382 281 50 91 chr13 21869009 21869147 -97875751 + MIR SINE MIR 112 237 -25 3491 111 108 89 chr13 21869396 21870159 -97874739 + LTR1 LTR ERV1 1 777 -8 346 274 56 111 chr13 21870817 21871051 -97873847 - MLT1I LTR MaLR -121 288 68 2242 79 3 14 chr13 21871793 21872119 -97872779 + AluSq SINE Alu 1 323 0 1537 116 30 67 chr13 21873694 21873962 -97870936 + AluY SINE Alu 41 298 -13 1063 138 25 0 chr13 21874158 21874318 -97870580 + AluY SINE Alu 1 164 -147 4049 150 65 5 chr13 21874319 21874964 -97869934 - LTR12 LTR ERV1 0 688 5 1827 201 63 53 chr13 21875008 21875591 -97869307 - pTR5 LTR ERV1 -1106 1332 744 984 115 0 7 chr13 21875591 21875739 -97869159 + AluY SINE Alu 161 307 -4 23 0 0 0 chr13 21875783 21875806 -97869092 + AT_rich Low_complexity Low_complexity 1 23 0 2110 111 17 0 chr13 21875837 21876134 -97868764 - AluSx SINE Alu 0 312 11 2373 86 0 0 chr13 21876146 21876447 -97868451 - AluY SINE Alu -10 301 1 2536 77 3 0 chr13 21877415 21877725 -97867173 + AluSx SINE Alu 1 311 -1 2492 62 0 7 chr13 21877952 21878259 -97866639 + AluY SINE Alu 1 305 -6 347 133 0 0 chr13 21878303 21878363 -97866535 - Alu SINE Alu 0 300 241 1960 97 0 0 chr13 21878625 21878873 -97866025 + AluSq SINE Alu 1 248 -65 232 236 163 65 chr13 21879145 21879268 -97865630 + MIR3 SINE MIR 40 174 -34 2260 90 7 0 chr13 21879680 21880317 -97864581 + AluSq SINE Alu 1 639 0 2419 105 0 0 chr13 21880320 21880624 -97864274 + AluSx SINE Alu 1 304 -8 184 116 163 23 chr13 21880667 21880710 -97864188 - L2 LINE L2 -5 3267 3219 2228 121 0 0 chr13 21881405 21881711 -97863187 - AluSq SINE Alu -7 306 1 2168 113 3 0 chr13 21882159 21882451 -97862447 + AluSq SINE Alu 9 301 -12 2211 109 0 7 chr13 21886799 21887103 -97857795 + AluSg SINE Alu 1 302 -8 213 39 0 0 chr13 21888762 21888788 -97856110 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 2120 108 42 0 chr13 21888927 21889213 -97855685 - AluSx SINE Alu -14 298 1 207 0 0 0 chr13 21889302 21889325 -97855573 + (TA)n Simple_repeat Simple_repeat 2 24 0 2481 71 10 0 chr13 21889724 21890032 -97854866 + AluY SINE Alu 1 311 0 180 0 0 0 chr13 21940953 21940973 -97803925 + (TTA)n Simple_repeat Simple_repeat 2 21 0 254 276 118 0 chr13 21942204 21942280 -97802618 + MIR SINE MIR 62 146 -62 230 268 93 31 chr13 21942845 21942942 -97801956 + MER91B DNA MER1_type 38 140 -50 215 320 27 0 chr13 21943121 21943196 -97801702 - L2 LINE L2 -5 3267 3191 221 125 21 21 chr13 21943268 21943316 -97801582 + (TA)n Simple_repeat Simple_repeat 1 48 0 1690 160 6 58 chr13 21943407 21943519 -97801379 + AluJo SINE Alu 1 117 -195 2145 138 3 0 chr13 21943519 21943817 -97801081 + AluSx SINE Alu 1 299 -13 1690 160 6 58 chr13 21943817 21944029 -97800869 + AluJo SINE Alu 117 308 -4 2917 185 9 30 chr13 21944399 21944957 -97799941 + MLT2B3 LTR ERVL 1 546 -8 2176 152 67 34 chr13 21945344 21945865 -97799033 + MLT2A2 LTR ERVL 1 552 -2 235 236 36 0 chr13 21945972 21946027 -97798871 + MIR SINE MIR 92 148 -114 2953 129 13 76 chr13 21946028 21946554 -97798344 + Tigger1 DNA MER2_type 2 494 -1924 4682 131 35 3 chr13 21946557 21947289 -97797609 + L1PA16 LINE L1 5387 6142 -24 3286 127 12 2 chr13 21947311 21947815 -97797083 + Tigger1 DNA MER2_type 480 988 -1430 1153 100 29 18 chr13 21947815 21947985 -97796913 + THE1C LTR MaLR 1 172 -203 672 248 7 26 chr13 21948007 21948160 -97796738 - MER45A DNA AcHobo -1 177 28 2434 96 3 0 chr13 21948391 21948703 -97796195 + AluSp SINE Alu 1 313 0 1072 129 17 11 chr13 21948703 21948881 -97796017 + AluSg/x SINE Alu 132 310 0 322 339 65 11 chr13 21949645 21949831 -97795067 + MIR SINE MIR 39 234 -28 192 286 0 0 chr13 21949995 21950044 -97794854 - MIR SINE MIR -10 252 204 203 247 137 14 chr13 21950653 21950726 -97794172 - MIR SINE MIR -57 205 124 371 127 27 136 chr13 21951313 21951423 -97793475 - MER53 DNA DNA -88 101 4 2048 121 0 0 chr13 21951578 21951859 -97793039 - AluSx SINE Alu -18 294 14 239 254 146 18 chr13 21952006 21952116 -97792782 + MIR SINE MIR 32 155 -107 2677 42 0 3 chr13 21952135 21952447 -97792451 + AluY SINE Alu 1 311 0 256 70 139 0 chr13 21952672 21952715 -97792183 - L1MB8 LINE L1 -3 6175 6127 290 208 7 78 chr13 21952987 21953140 -97791758 - MER4A LTR ERV1 -203 461 261 510 124 90 0 chr13 21953140 21953229 -97791669 - MER4A LTR ERV1 -566 98 2 2289 98 0 28 chr13 21955171 21955489 -97789409 - AluY SINE Alu -2 309 1 2343 104 13 0 chr13 21955676 21955984 -97788914 + AluSx SINE Alu 1 312 0 310 282 151 22 chr13 21957324 21957689 -97787209 - L1M4 LINE L1 -2881 3265 2854 266 247 39 0 chr13 21957976 21958053 -97786845 - L1M4 LINE L1 -3750 2396 2317 209 316 89 30 chr13 21958230 21958398 -97786500 - L2 LINE L2 -117 3196 3019 354 262 136 0 chr13 21958409 21958512 -97786386 - L2 LINE L2 -8 3305 3189 791 294 151 22 chr13 21958539 21959012 -97785886 - L2 LINE L2 -307 3006 2457 358 176 15 0 chr13 21959458 21959526 -97785372 + MLT2B3 LTR ERVL 3 71 -483 2009 160 134 46 chr13 21959625 21960057 -97784841 + MLT2B3 LTR ERVL 77 546 -8 385 281 69 44 chr13 21960148 21960237 -97784661 + ERVL LTR ERVL 5214 5310 -454 2466 126 28 11 chr13 21960237 21960595 -97784303 + THE1B LTR MaLR 1 364 0 385 281 69 44 chr13 21960595 21960665 -97784233 + ERVL LTR ERVL 5310 5377 -387 2352 214 105 2 chr13 21960954 21961468 -97783430 - MLT1F1 LTR MaLR 0 567 1 277 179 18 0 chr13 21961494 21961550 -97783348 + LTR67 LTR ERVL 6 62 -495 257 274 24 12 chr13 21961808 21961892 -97783006 + LTR67 LTR ERVL 433 517 -40 451 51 0 0 chr13 21961972 21962031 -97782867 - L1PA3 LINE L1 -1009 5137 5079 8262 18 1 0 chr13 21962031 21963034 -97781864 + L1PA3 LINE L1 5149 6152 -3 22 0 0 0 chr13 21963034 21963056 -97781842 + AT_rich Low_complexity Low_complexity 1 22 0 614 101 0 0 chr13 21963215 21963294 -97781604 + AluSg/x SINE Alu 218 296 -13 901 226 98 16 chr13 21963668 21963973 -97780925 - MLT2C1 LTR ERVL -6 391 62 23 54 0 0 chr13 21964118 21964155 -97780743 + AT_rich Low_complexity Low_complexity 1 37 0 312 235 67 123 chr13 21964544 21964723 -97780175 + MIR SINE MIR 6 174 -88 1841 168 42 81 chr13 21965033 21965439 -97779459 + MLT1B LTR MaLR 1 390 0 272 150 0 0 chr13 21965691 21965731 -97779167 - L1ME LINE L1 -431 5733 5694 1301 235 71 55 chr13 21965734 21966185 -97778713 + MER101 LTR ERV1 13 470 -4 1190 250 3 20 chr13 21966188 21966306 -97778592 - L1ME LINE L1 -470 5696 5578 2500 76 0 0 chr13 21966306 21966610 -97778288 + AluY SINE Alu 1 304 -7 1190 250 3 20 chr13 21966610 21966787 -97778111 - L1ME LINE L1 -588 5578 5406 2194 97 31 0 chr13 21966930 21967220 -97777678 - AluSx SINE Alu -13 299 1 4695 146 53 15 chr13 21967224 21968101 -97776797 - L1MC2 LINE L1 -236 6108 5198 800 241 111 26 chr13 21969214 21969521 -97775377 - L1MD3 LINE L1 0 7995 7715 2213 119 0 0 chr13 21969521 21969815 -97775083 - AluSx SINE Alu -18 294 1 800 241 111 26 chr13 21969815 21969875 -97775023 - L1MD3 LINE L1 -280 7715 5943 406 216 26 37 chr13 21969879 21970011 -97774887 - L1M2 LINE L1 -539 5627 5509 367 203 163 65 chr13 21970306 21970429 -97774469 + MIR SINE MIR 46 180 -82 256 272 193 9 chr13 21971569 21971683 -97773215 - MIR SINE MIR -117 145 11 1060 167 118 29 chr13 21971853 21972098 -97772800 + AluJo SINE Alu 38 304 -8 582 231 172 14 chr13 21972240 21972530 -97772368 + L1ME3 LINE L1 5149 5473 -691 2380 60 0 0 chr13 21972530 21972815 -97772083 + AluY SINE Alu 24 308 -3 721 263 52 73 chr13 21972826 21973073 -97771825 + L1ME3 LINE L1 5841 6081 -81 1533 171 90 31 chr13 21973073 21973395 -97771503 - MER2 DNA MER2_type -3 341 1 721 263 52 73 chr13 21973395 21973474 -97771424 + L1ME3 LINE L1 6081 6160 -2 679 296 98 22 chr13 21973699 21974313 -97770585 - L2 LINE L2 -30 3283 2524 2325 103 3 0 chr13 21974588 21974890 -97770008 - AluSx SINE Alu -9 303 1 1305 112 10 25 chr13 21974890 21975076 -97769822 + MER4B LTR ERV1 425 609 -1 274 303 25 33 chr13 21975155 21975277 -97769621 + MIR SINE MIR 92 212 -50 304 281 27 23 chr13 21976238 21976645 -97768253 - ALR/Alpha Satellite centromeric -41 408 1 2302 93 3 0 chr13 21976704 21977005 -97767893 - AluSp SINE Alu -11 302 1 432 256 20 20 chr13 21977072 21977282 -97767616 - ALR/Alpha Satellite centromeric 0 210 1 251 265 48 42 chr13 21977556 21977722 -97767176 - ALR/Alpha Satellite centromeric -5 167 1 352 257 42 41 chr13 21977831 21978461 -97766437 - ALR/Alpha Satellite centromeric 0 630 1 1055 41 0 0 chr13 21978468 21978590 -97766308 + AluY SINE Alu 178 299 -12 269 306 19 32 chr13 21978593 21978880 -97766018 - ALR/Alpha Satellite centromeric -5 283 1 3892 238 53 34 chr13 21979021 21980268 -97764630 - L1MEc LINE L1 -2679 3965 2743 2336 119 0 0 chr13 21980268 21980578 -97764320 - AluSg SINE Alu 0 310 1 3892 238 53 34 chr13 21980578 21980830 -97764068 - L1MEc LINE L1 -3901 2743 2465 1997 135 3 10 chr13 21980830 21981127 -97763771 + AluSx SINE Alu 1 295 -17 3892 238 53 34 chr13 21981127 21981151 -97763747 - L1MEc LINE L1 -4179 2465 2443 518 45 0 0 chr13 21981181 21981248 -97763650 - L1PB1 LINE L1 -1 6150 6084 2148 122 0 3 chr13 21981250 21981544 -97763354 - AluSx SINE Alu -10 302 10 416 170 160 10 chr13 21981551 21981651 -97763247 - LTR47A LTR ERVL -77 375 261 738 228 78 25 chr13 21981906 21982200 -97762698 - L1MEc LINE L1 -5159 1666 1169 270 331 122 17 chr13 21982197 21982378 -97762520 - L1MEc LINE L1 -6166 659 460 * 375 188 196 45 chr13 21982440 21982552 -97762346 + L2 LINE L2 3185 3313 0 2133 104 3 7 chr13 21983045 21983333 -97761565 - AluSq SINE Alu -13 300 14 435 294 64 64 chr13 21984098 21984593 -97760305 + L1M2 LINE L1 4915 5415 -780 2298 113 0 0 chr13 21984593 21984904 -97759994 + AluY SINE Alu 1 311 0 435 294 64 64 chr13 21984904 21984942 -97759956 + L1M2 LINE L1 5415 5452 -743 22 70 0 0 chr13 21986550 21986593 -97758305 + AT_rich Low_complexity Low_complexity 1 43 0 193 308 29 29 chr13 21986775 21986879 -97758019 - MIR SINE MIR -93 169 66 192 97 0 0 chr13 21988813 21988844 -97756054 + (CA)n Simple_repeat Simple_repeat 2 32 0 2027 130 33 0 chr13 21989586 21989885 -97755013 + AluSp SINE Alu 1 309 -4 2571 20 7 3 chr13 21989903 21990198 -97754700 + AluY SINE Alu 1 296 -15 2455 257 109 21 chr13 21990199 21991367 -97753531 + HAL1 LINE L1 1232 2502 -5 389 302 12 69 chr13 21992700 21992776 -97752122 - LTR33 LTR ERVL 0 521 442 2563 42 7 13 chr13 21992776 21993083 -97751815 - AluY SINE Alu -6 305 1 389 302 12 69 chr13 21993083 21993241 -97751657 - LTR33 LTR ERVL -79 442 295 2057 93 61 0 chr13 21993751 21994029 -97750869 - AluSc SINE Alu -14 295 1 2635 181 137 108 chr13 21994436 21994856 -97750042 + L1MC3 LINE L1 6662 7069 -716 368 247 11 0 chr13 21994856 21994945 -97749953 + MLT1F1 LTR MaLR 35 124 -443 2635 181 137 108 chr13 21994945 21995388 -97749510 + L1MC3 LINE L1 7069 7640 -145 1503 147 0 16 chr13 21996318 21996563 -97748335 + AluJo SINE Alu 60 300 -12 1984 99 53 11 chr13 21997008 21997292 -97747606 - AluSp SINE Alu -11 302 7 1066 98 0 0 chr13 21997300 21997432 -97747466 - AluSq/x SINE Alu -181 132 1 1743 241 67 30 chr13 21997550 21998210 -97746688 - L1MCc LINE L1 -5086 1337 654 262 176 20 0 chr13 21998314 21998365 -97746533 - MLT1A1 LTR MaLR -4 361 310 1704 187 10 0 chr13 21998367 21998661 -97746237 - AluJo SINE Alu -14 298 2 542 224 26 13 chr13 21998664 21998816 -97746082 - L1MCc LINE L1 -6246 177 24 1165 206 5 0 chr13 22001622 22001821 -97743077 + Tigger3(Golem) DNA MER2_type 1 200 -2829 242 276 60 35 chr13 22002659 22002788 -97742110 - MIR SINE MIR -66 142 21 301 242 96 107 chr13 22003339 22003517 -97741381 + Charlie8 DNA MER1_type 3 178 -2239 250 304 74 45 chr13 22003648 22003891 -97741007 + L2 LINE L2 1962 2211 -1103 210 280 65 19 chr13 22004187 22004294 -97740604 + L2 LINE L2 2290 2401 -913 2096 107 0 14 chr13 22004439 22004728 -97740170 - AluSx SINE Alu -7 305 21 369 274 248 0 chr13 22004898 22005051 -97739847 - MIR SINE MIR -44 218 28 985 185 16 11 chr13 22005999 22006183 -97738715 - AluJo SINE Alu -13 299 115 245 256 9 40 chr13 22007166 22007281 -97737617 + MIR SINE MIR 10 117 -91 985 208 23 32 chr13 22010800 22011021 -97733877 + MER20 DNA MER1_type 1 219 0 2224 117 0 3 chr13 22011894 22012202 -97732696 + AluSx SINE Alu 1 307 -5 481 280 35 55 chr13 22012281 22012481 -97732417 + MIR SINE MIR 1 196 -66 517 250 26 0 chr13 22012483 22012599 -97732299 + MER5A DNA MER1_type 1 119 -70 278 226 32 0 chr13 22012618 22012680 -97732218 + MIR SINE MIR 189 252 -10 1841 83 0 0 chr13 22012685 22012913 -97731985 + AluY SINE Alu 83 310 -1 2271 105 3 0 chr13 22013282 22013587 -97731311 + AluSc SINE Alu 1 306 -3 614 146 48 37 chr13 22013938 22014418 -97730480 + L1MC2 LINE L1 6142 6615 -1170 1963 156 78 23 chr13 22014418 22014764 -97730134 - MLT1A1 LTR MaLR 0 365 1 614 146 48 37 chr13 22014764 22014897 -97730001 + L1MC2 LINE L1 6615 7763 -22 390 21 0 0 chr13 22014929 22014976 -97729922 + (GA)n Simple_repeat Simple_repeat 2 48 0 810 262 41 22 chr13 22015460 22015727 -97729171 + MLT1L LTR MaLR 5 276 -339 4245 108 169 44 chr13 22015865 22016595 -97728303 + LTR12 LTR ERV1 5 825 -1 37223 86 8 8 chr13 22016596 22021574 -97723324 + HERV17 LTR ERV1 17 4954 -1960 632 131 214 16 chr13 22021567 22021819 -97723079 + HERV17 LTR ERV1 703 1141 -5755 * 7003 101 72 59 chr13 22021815 22024193 -97720705 + HERV17 LTR ERV1 504 2438 0 377 289 83 0 chr13 22024333 22024454 -97720444 + MLT1L LTR MaLR 483 613 -2 1697 108 0 12 chr13 22024783 22025024 -97719874 + AluSc SINE Alu 1 238 -71 218 225 0 0 chr13 22025035 22025075 -97719823 + polypurine Low_complexity Low_complexity 4 43 0 479 219 41 16 chr13 22025230 22025353 -97719545 - L1ME2 LINE L1 -21 6143 6018 810 260 44 14 chr13 22025432 22025734 -97719164 - L1ME2 LINE L1 -180 6482 6236 476 353 77 0 chr13 22025734 22026006 -97718892 - LTR16A LTR ERVL 0 450 158 3018 228 33 41 chr13 22026116 22026832 -97718066 - L1ME2 LINE L1 -420 6242 5536 1676 180 28 0 chr13 22026832 22027121 -97717777 - AluJo SINE Alu -14 298 2 3018 228 33 41 chr13 22027121 22027810 -97717088 - L1ME2 LINE L1 -1126 5536 4843 242 222 0 32 chr13 22027814 22027877 -97717021 + CT-rich Low_complexity Low_complexity 3 63 0 1708 259 27 13 chr13 22027893 22028419 -97716479 - L1ME2 LINE L1 -2040 4604 4072 1437 81 0 11 chr13 22028630 22028815 -97716083 - AluY SINE Alu -128 183 1 9468 205 47 67 chr13 22029191 22029249 -97715649 - L1MB7 LINE L1 -16 6562 6504 2149 119 7 0 chr13 22029249 22029544 -97715354 + AluSq SINE Alu 1 297 -16 9468 205 47 67 chr13 22029544 22030692 -97714206 - L1MB7 LINE L1 -74 6504 5335 834 197 0 14 chr13 22030692 22030834 -97714064 - FRAM SINE Alu -14 162 23 9468 205 47 67 chr13 22030834 22030986 -97713912 - L1MB7 LINE L1 -1243 5335 5181 1930 154 7 13 chr13 22030986 22031291 -97713607 + AluSq SINE Alu 1 303 -10 9468 205 47 67 chr13 22031291 22032999 -97711899 - L1MB7 LINE L1 -1397 5181 3441 2424 96 3 0 chr13 22032999 22033311 -97711587 - AluSp SINE Alu 0 313 1 2389 75 3 28 chr13 22033312 22033631 -97711267 - AluY SINE Alu 0 311 1 9468 205 47 67 chr13 22033631 22034464 -97710434 - L1MB7 LINE L1 -3136 3442 2606 23 0 0 0 chr13 22034524 22034547 -97710351 + AT_rich Low_complexity Low_complexity 1 23 0 6609 234 45 28 chr13 22034554 22035881 -97709017 - L1ME2 LINE L1 -3953 2691 1388 2067 145 38 30 chr13 22035881 22036253 -97708645 + THE1C LTR MaLR 1 375 0 6609 234 45 28 chr13 22036253 22037466 -97707432 - L1ME2 LINE L1 -5256 1388 10 545 87 0 0 chr13 22038034 22038103 -97706795 + AluSc SINE Alu 176 244 -65 6289 107 55 31 chr13 22038241 22038373 -97706525 - MER4-int LTR ERV1 -228 6370 6243 2920 9 0 3 chr13 22038373 22038692 -97706206 - AluYb8 SINE Alu 0 318 1 6289 107 55 31 chr13 22038692 22039612 -97705286 - MER4-int LTR ERV1 -355 6243 5290 2143 135 3 3 chr13 22039612 22039924 -97704974 + AluSx SINE Alu 1 312 0 2126 123 7 0 chr13 22040013 22040305 -97704593 - AluSx SINE Alu -18 294 1 670 266 85 86 chr13 22040412 22041142 -97703756 + HAL1 LINE L1 1012 1740 -767 2260 110 7 0 chr13 22041895 22042187 -97702711 + AluSx SINE Alu 1 294 -18 324 239 43 43 chr13 22042205 22042322 -97702576 + HAL1b LINE L1 795 911 -437 834 235 55 20 chr13 22042330 22042585 -97702313 + L1MB8 LINE L1 5915 6178 0 2492 71 0 0 chr13 22042600 22042894 -97702004 + AluY SINE Alu 1 294 -17 2021 98 35 7 chr13 22043819 22044002 -97700896 - AluSq SINE Alu 0 313 119 348 24 0 0 chr13 22044002 22044043 -97700855 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2021 98 35 7 chr13 22044043 22044165 -97700733 - AluSq SINE Alu -194 119 2 343 303 41 0 chr13 22045447 22045569 -97699329 - MIR SINE MIR -94 168 42 273 261 22 11 chr13 22045574 22045666 -97699232 + MIR SINE MIR 167 259 -3 2433 78 0 0 chr13 22045741 22046034 -97698864 + AluY SINE Alu 1 293 -18 364 252 52 22 chr13 22046666 22046801 -97698097 + MIR SINE MIR 122 260 -2 636 217 0 0 chr13 22047041 22047156 -97697742 + FLAM_C SINE Alu 2 116 -27 507 285 104 10 chr13 22048057 22048250 -97696648 + MIR SINE MIR 26 236 -26 1727 159 100 3 chr13 22048398 22048707 -97696191 - MER2 DNA MER2_type 0 345 7 2340 94 3 0 chr13 22048824 22049123 -97695775 + AluSx SINE Alu 1 300 -12 281 211 253 11 chr13 22049517 22049612 -97695286 + L2 LINE L2 3192 3309 -4 222 333 0 15 chr13 22049785 22049851 -97695047 - MIR SINE MIR -103 105 41 21 57 0 0 chr13 22051117 22051152 -97693746 + AT_rich Low_complexity Low_complexity 1 35 0 2546 66 0 0 chr13 22051175 22051476 -97693422 - AluY SINE Alu -10 301 1 263 214 9 98 chr13 22052129 22052241 -97692657 + MIR SINE MIR 79 180 -82 227 276 238 9 chr13 22052227 22052332 -97692566 - MIR3 SINE MIR -40 168 40 * 2391 77 3 3 chr13 22053543 22053842 -97691056 + AluY SINE Alu 1 299 -12 804 161 0 0 chr13 22054108 22054232 -97690666 - FRAM SINE Alu -16 160 37 1046 183 81 166 chr13 22054720 22055445 -97689453 - MER4A LTR ERV1 0 664 1 241 356 44 0 chr13 22055545 22055635 -97689263 - L2 LINE L2 -31 3241 3148 2356 93 3 0 chr13 22056438 22056729 -97688169 + AluSp SINE Alu 1 292 -21 1588 171 49 14 chr13 22057359 22057646 -97687252 + AluJo SINE Alu 1 297 -15 193 219 0 137 chr13 22057945 22058018 -97686880 - L2 LINE L2 -1 3312 3250 191 173 19 0 chr13 22058645 22058697 -97686201 + A-rich Low_complexity Low_complexity 2 54 0 258 32 0 0 chr13 22058775 22058806 -97686092 + (CA)n Simple_repeat Simple_repeat 2 32 0 296 155 3 0 chr13 22058890 22058939 -97685959 + AluS SINE Alu 23 64 -239 240 160 51 40 chr13 22059053 22059228 -97685670 + (CA)n Simple_repeat Simple_repeat 1 177 0 418 147 55 16 chr13 22059292 22059738 -97685160 + (CA)n Simple_repeat Simple_repeat 1 463 0 197 180 52 23 chr13 22060017 22060189 -97684709 + (CA)n Simple_repeat Simple_repeat 2 178 0 396 183 40 23 chr13 22060216 22060525 -97684373 + (CA)n Simple_repeat Simple_repeat 1 314 0 428 247 54 129 chr13 22060645 22061054 -97683844 - L1ME LINE L1 -415 5706 5317 339 121 17 0 chr13 22061080 22061138 -97683760 - AluSp/q SINE Alu -4 299 241 4665 165 45 49 chr13 22061241 22062297 -97682601 - L1 LINE L1 -1206 4940 3889 1670 137 27 57 chr13 22062299 22062599 -97682299 - AluSq SINE Alu -22 291 1 1543 197 10 10 chr13 22062602 22062912 -97681986 - AluJo SINE Alu -2 310 1 516 225 0 0 chr13 22064027 22064156 -97680742 + (TA)n Simple_repeat Simple_repeat 2 130 0 232 276 46 11 chr13 22064157 22064244 -97680654 + L1MC4 LINE L1 6614 6703 -1339 236 140 0 105 chr13 22064266 22064323 -97680575 + L1MC4 LINE L1 6652 6702 -1340 208 218 0 73 chr13 22064327 22064382 -97680516 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 253 253 0 63 chr13 22064382 22064477 -97680421 - L1MC4 LINE L1 -1339 6703 6615 192 40 0 0 chr13 22064485 22064510 -97680388 + (TG)n Simple_repeat Simple_repeat 2 26 0 2437 268 79 56 chr13 22064525 22065287 -97679611 + MLT-int LTR MaLR 581 1359 -376 2291 92 3 0 chr13 22065425 22065707 -97679191 + AluSp SINE Alu 6 288 -25 695 276 103 49 chr13 22065911 22066093 -97678805 - L2 LINE L2 -4 3309 3138 1544 180 48 45 chr13 22066093 22066404 -97678494 - AluJo SINE Alu 0 312 1 695 276 103 49 chr13 22066404 22066590 -97678308 - L2 LINE L2 -175 3138 2921 184 135 19 19 chr13 22066701 22066753 -97678145 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 678 259 4 98 chr13 22066861 22067050 -97677848 - MIR SINE MIR -10 252 92 1910 110 8 4 chr13 22067050 22067314 -97677584 + AluSx SINE Alu 21 285 -27 678 259 4 98 chr13 22067314 22067379 -97677519 - MIR SINE MIR -170 92 22 928 221 35 0 chr13 22067406 22067605 -97677293 - MER63A DNA MER1_type 0 210 5 316 289 75 23 chr13 22067790 22067963 -97676935 + MIR SINE MIR 2 183 -79 1217 175 185 9 chr13 22069791 22070074 -97674824 + L1MA5A LINE L1 5943 6287 -10 506 97 138 0 chr13 22070117 22070240 -97674658 + L1PA8 LINE L1 5991 6153 -1 457 295 29 6 chr13 22070324 22070497 -97674401 + L1MB3 LINE L1 6007 6183 0 204 320 0 13 chr13 22071203 22071278 -97673620 - MIR SINE MIR 0 262 189 652 210 120 30 chr13 22071282 22071449 -97673449 - AluJo SINE Alu -129 183 2 306 247 37 0 chr13 22071453 22071534 -97673364 - MIR SINE MIR -110 152 69 240 262 48 48 chr13 22071798 22071882 -97673016 + L2 LINE L2 3188 3271 -1 184 366 108 48 chr13 22073205 22073538 -97671360 + L3b LINE CR1 1146 1498 -85 13460 116 54 30 chr13 22074149 22074490 -97670408 - Tigger1 DNA MER2_type 0 2418 2087 2342 92 0 7 chr13 22074490 22074785 -97670113 + AluSx SINE Alu 1 293 -19 13460 116 54 30 chr13 22074785 22075744 -97669154 - Tigger1 DNA MER2_type -331 2087 1153 2381 77 3 7 chr13 22075744 22076044 -97668854 + AluSc SINE Alu 1 299 -10 13460 116 54 30 chr13 22076044 22076943 -97667955 - Tigger1 DNA MER2_type -1265 1153 165 260 250 0 0 chr13 22076916 22076964 -97667934 + AluJb SINE Alu 203 250 -52 * 1252 169 5 5 chr13 22076964 22077177 -97667721 + AluJo SINE Alu 85 297 -15 1167 144 0 21 chr13 22077187 22077375 -97667523 - Tigger1 DNA MER2_type -2213 205 22 354 231 88 27 chr13 22078335 22078482 -97666416 - MER45A DNA AcHobo -20 158 3 2651 18 0 0 chr13 22079543 22079851 -97665047 + AluY SINE Alu 1 308 0 183 80 0 0 chr13 22079850 22079875 -97665023 + (TA)n Simple_repeat Simple_repeat 2 26 0 761 259 20 51 chr13 22080098 22080453 -97664445 - L1M4 LINE L1 -885 5330 4987 3907 93 28 2 chr13 22080553 22081093 -97663805 + MER41A LTR ERV1 1 554 0 313 290 109 11 chr13 22081095 22081278 -97663620 - L1M4 LINE L1 -1369 4846 4646 3315 157 52 7 chr13 22081357 22081957 -97662941 - LTR24C LTR ERV1 -8 627 1 387 263 94 58 chr13 22081976 22082500 -97662398 - L1MEc LINE L1 -3655 2560 2049 2495 61 0 0 chr13 22082503 22082798 -97662100 - AluY SINE Alu -16 295 1 421 202 101 8 chr13 22082954 22083073 -97661825 - L1MA10 LINE L1 0 6334 6205 287 147 15 147 chr13 22083299 22083367 -97661531 - AluS SINE Alu -248 60 2 2142 121 0 0 chr13 22083827 22084107 -97660791 - AluSx SINE Alu -32 280 1 229 145 15 0 chr13 22084481 22084523 -97660375 + MIR3 SINE MIR 111 154 -54 2201 159 54 7 chr13 22084647 22085055 -97659843 - L1MB3 LINE L1 -8 6175 5749 180 319 0 14 chr13 22085322 22085391 -97659507 + MIR3 SINE MIR 12 79 -129 237 300 100 15 chr13 22085425 22085555 -97659343 + MIR SINE MIR 66 206 -56 6373 138 41 65 chr13 22085619 22086126 -97658772 - Tigger3b DNA MER2_type -1802 1226 708 2390 92 0 0 chr13 22086126 22086420 -97658478 - AluY SINE Alu -17 294 1 6373 138 41 65 chr13 22086420 22086825 -97658073 - Tigger3b DNA MER2_type -2320 708 350 2392 91 0 0 chr13 22086825 22087122 -97657776 - AluSx SINE Alu -14 298 2 6373 138 41 65 chr13 22087122 22087464 -97657434 - Tigger3b DNA MER2_type -2678 350 1 298 160 85 53 chr13 22087792 22087886 -97657012 - MER4C LTR ERV1 -2 463 367 4053 112 4 0 chr13 22087886 22088438 -97656460 - MER41A LTR ERV1 0 554 1 10627 109 33 24 chr13 22088438 22091498 -97653400 - MER41A-int LTR ERV1 -2 5944 2606 3954 141 61 21 chr13 22091470 22092168 -97652730 - MER41A-int LTR ERV1 -5313 633 1 * 4256 96 9 5 chr13 22092168 22092720 -97652178 - MER41A LTR ERV1 0 554 1 381 229 10 21 chr13 22092720 22092816 -97652082 - MER4C LTR ERV1 -95 370 276 * 434 228 79 78 chr13 22092806 22093125 -97651773 - MER4C LTR ERV1 -167 430 1 1468 185 14 20 chr13 22094542 22094834 -97650064 - AluJo SINE Alu -22 290 1 1303 113 128 93 chr13 22095735 22095992 -97648906 + AluSx SINE Alu 24 289 -23 29 0 0 0 chr13 22095992 22096021 -97648877 + AT_rich Low_complexity Low_complexity 1 29 0 1865 206 92 25 chr13 22096129 22096696 -97648202 + pTR5 LTR ERV1 741 1345 -1093 4724 117 92 47 chr13 22096711 22097498 -97647400 + LTR12 LTR ERV1 5 826 0 537 168 8 130 chr13 22098160 22098291 -97646607 - FLAM_A SINE Alu -20 122 8 822 93 0 70 chr13 22102615 22102744 -97642154 - FRAM SINE Alu -14 162 43 733 143 0 24 chr13 22104180 22104306 -97640592 + FRAM SINE Alu 49 171 -5 23 33 0 0 chr13 22105023 22105053 -97639845 + AT_rich Low_complexity Low_complexity 1 30 0 1476 161 4 11 chr13 22106678 22106939 -97637959 + L1MB3 LINE L1 5917 6175 -8 219 69 0 0 chr13 22107341 22107370 -97637528 + (TA)n Simple_repeat Simple_repeat 2 30 0 237 83 0 0 chr13 22107404 22107440 -97637458 + (CA)n Simple_repeat Simple_repeat 1 36 0 228 176 0 20 chr13 22107527 22107578 -97637320 + L1ME4a LINE L1 6072 6121 0 4459 206 70 38 chr13 22107815 22109014 -97635884 + L1MC4 LINE L1 6806 8042 0 1425 175 72 0 chr13 22109502 22109765 -97635133 + MER7A DNA MER2_type 2 281 -65 14345 165 20 3 chr13 22110132 22113444 -97631454 + L1PA14 LINE L1 2790 6157 -4 21 71 0 0 chr13 22113601 22113643 -97631255 + AT_rich Low_complexity Low_complexity 1 42 0 2550 141 47 30 chr13 22114411 22114687 -97630211 + Tigger2a DNA MER2_type 1 288 -2420 2275 99 3 0 chr13 22114687 22114990 -97629908 + AluSg SINE Alu 1 304 -6 2550 141 47 30 chr13 22114990 22115140 -97629758 + Tigger2a DNA MER2_type 288 434 0 270 260 213 7 chr13 22116086 22116236 -97628662 + MIR SINE MIR 2 182 -80 1382 181 22 53 chr13 22116568 22116639 -97628259 - MER33 DNA MER1_type -2274 311 239 774 199 122 0 chr13 22116639 22116795 -97628103 + FAM SINE Alu 1 175 0 1382 181 22 53 chr13 22116795 22117043 -97627855 - MER33 DNA MER1_type -2346 239 2 293 47 23 0 chr13 22118699 22118742 -97626156 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 248 323 30 42 chr13 22119671 22119790 -97625108 - MIR SINE MIR -62 146 23 454 243 64 55 chr13 22120690 22121105 -97623793 + L2 LINE L2 2230 3188 -125 277 272 112 24 chr13 22121379 22121548 -97623350 + MLT1J2 LTR MaLR 264 447 -3 293 278 156 0 chr13 22121564 22121654 -97623244 + L2 LINE L2 3210 3313 0 206 378 12 24 chr13 22122496 22122578 -97622320 - MIR SINE MIR -162 100 20 189 0 0 0 chr13 22122629 22122650 -97622248 + (A)n Simple_repeat Simple_repeat 1 21 0 2619 155 38 8 chr13 22123730 22124207 -97620691 - L1MB5 LINE L1 0 6174 5684 10628 205 25 18 chr13 22124460 22126800 -97618098 + L1MB4 LINE L1 2669 5038 -1142 1632 176 47 4 chr13 22126800 22127078 -97617820 + AluJo SINE Alu 1 290 -22 10628 205 25 18 chr13 22127078 22128229 -97616669 + L1MB4 LINE L1 5038 6180 0 1038 296 101 41 chr13 22128237 22128873 -97616025 - L2 LINE L2 -556 2758 2085 1975 138 10 0 chr13 22128989 22129279 -97615619 + AluSx SINE Alu 1 293 -19 2932 89 14 5 chr13 22129883 22130253 -97614645 - THE1C LTR MaLR 0 375 3 786 264 74 4 chr13 22131897 22132128 -97612770 + MIR SINE MIR 12 258 -4 1372 204 148 0 chr13 22132393 22132711 -97612187 + MER47A DNA MER2_type 2 366 0 2025 132 10 10 chr13 22132860 22133156 -97611742 + AluSx SINE Alu 1 296 -16 2174 133 0 10 chr13 22135078 22135380 -97609518 - AluSx SINE Alu -13 299 1 27 29 0 0 chr13 22137534 22137568 -97607330 + AT_rich Low_complexity Low_complexity 1 34 0 193 226 38 0 chr13 22137675 22137728 -97607170 + L2 LINE L2 2640 2694 -620 186 343 49 10 chr13 22137811 22137913 -97606985 + L2 LINE L2 2987 3092 -221 550 245 19 57 chr13 22138487 22138646 -97606252 + L1ME1 LINE L1 6031 6183 -1 21 82 0 0 chr13 22138658 22138707 -97606191 + AT_rich Low_complexity Low_complexity 1 49 0 2276 101 0 0 chr13 22138812 22139100 -97605798 + AluSx SINE Alu 1 288 -24 24 32 0 0 chr13 22139272 22139303 -97605595 + AT_rich Low_complexity Low_complexity 1 31 0 2249 125 0 0 chr13 22140613 22140924 -97603974 - AluSq SINE Alu -2 311 1 1502 163 98 14 chr13 22141102 22141378 -97603520 + AluJb SINE Alu 1 299 -13 22 35 0 0 chr13 22143339 22143368 -97601530 + AT_rich Low_complexity Low_complexity 1 29 0 2021 153 3 13 chr13 22144155 22144468 -97600430 - AluJb SINE Alu -2 310 1 290 304 39 10 chr13 22144794 22144896 -97600002 - MIR SINE MIR -120 142 38 216 158 0 0 chr13 22145685 22145723 -97599175 + (CATATA)n Simple_repeat Simple_repeat 6 43 0 324 0 0 0 chr13 22148267 22148303 -97596595 + (CA)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr13 22148554 22148579 -97596319 + AT_rich Low_complexity Low_complexity 1 25 0 614 286 71 96 chr13 22148580 22148863 -97596035 + L1ME4a LINE L1 5380 5669 -452 2566 56 0 0 chr13 22148863 22149167 -97595731 + AluY SINE Alu 1 304 -7 614 286 71 96 chr13 22149167 22149439 -97595459 + L1ME4a LINE L1 5669 5939 -182 2368 87 0 3 chr13 22149439 22149737 -97595161 + AluSq SINE Alu 1 297 -16 614 286 71 96 chr13 22149737 22149844 -97595054 + L1ME4a LINE L1 5939 6047 -74 5128 159 69 33 chr13 22150150 22151544 -97593354 + L1MB2 LINE L1 4693 6170 -1 32 0 0 0 chr13 22152035 22152067 -97592831 + AT_rich Low_complexity Low_complexity 1 32 0 2043 110 3 23 chr13 22152068 22152368 -97592530 - AluSg SINE Alu -16 294 1 1559 150 8 26 chr13 22152524 22152791 -97592107 - AluJb SINE Alu -12 300 39 399 316 7 15 chr13 22153477 22153613 -97591285 + MIR SINE MIR 56 190 -72 558 292 22 15 chr13 22153811 22154016 -97590882 - MIR SINE MIR 0 262 56 4607 152 29 51 chr13 22154923 22155367 -97589531 - L1MB8 LINE L1 0 6178 5726 1413 152 105 99 chr13 22155367 22155729 -97589169 - MLT1A1 LTR MaLR 0 365 2 4607 152 29 51 chr13 22155729 22156394 -97588504 - L1MB8 LINE L1 -452 5726 5099 338 324 179 14 chr13 22156595 22156802 -97588096 + MIR SINE MIR 12 252 -10 626 290 63 90 chr13 22157224 22157612 -97587286 + L2 LINE L2 2817 3192 -121 2208 99 17 3 chr13 22157612 22157930 -97586968 + AluSp SINE Alu 1 322 0 626 290 63 90 chr13 22157930 22158049 -97586849 + L2 LINE L2 3192 3313 0 323 283 99 13 chr13 22158053 22158205 -97586693 - L1M LINE L1 -734 5428 5264 599 297 82 0 chr13 22159474 22159706 -97585192 - MIR SINE MIR -7 255 5 222 37 0 0 chr13 22159721 22159748 -97585150 + (TA)n Simple_repeat Simple_repeat 1 27 0 230 262 0 16 chr13 22160930 22160991 -97583907 + GA-rich Low_complexity Low_complexity 2 61 0 594 224 122 0 chr13 22161089 22161236 -97583662 + MIR SINE MIR 49 213 -49 251 225 12 38 chr13 22162529 22162609 -97582289 - L1MC/D LINE L1 -1907 5901 5824 184 224 122 0 chr13 22162620 22162669 -97582229 + L2 LINE L2 3169 3223 -49 1602 208 128 2 chr13 22162876 22163290 -97581608 + MER31B LTR ERV1 1 466 0 294 95 0 0 chr13 22163339 22163381 -97581517 + (TG)n Simple_repeat Simple_repeat 2 43 0 441 169 36 26 chr13 22165732 22165902 -97578996 - MER3 DNA MER1_type 0 209 6 468 258 88 25 chr13 22165970 22166129 -97578769 + MIR SINE MIR 59 227 -35 183 80 0 0 chr13 22167043 22167068 -97577830 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1986 122 4 0 chr13 22167068 22167339 -97577559 - AluSx SINE Alu -40 272 1 26 0 0 0 chr13 22168122 22168148 -97576750 + AT_rich Low_complexity Low_complexity 1 26 0 11448 200 68 17 chr13 22168369 22173433 -97571465 - L1MC1 LINE L1 -16 6597 1281 3811 184 144 4 chr13 22173462 22173952 -97570946 - L1MC1 LINE L1 -5465 961 541 185 0 0 39 chr13 22173952 22173978 -97570920 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3811 184 144 4 chr13 22173978 22174312 -97570586 - L1MC1 LINE L1 -5885 541 21 2733 100 65 105 chr13 22174548 22175178 -97569720 + MER4B LTR ERV1 3 779 0 1703 69 0 0 chr13 22176111 22176314 -97568584 - L1PA7 LINE L1 -18 6136 5934 22987 121 15 86 chr13 22176318 22180681 -97564217 - L1P LINE L1 -2079 4067 12 2296 112 0 3 chr13 22182469 22182774 -97562124 + AluSc SINE Alu 4 307 -2 253 224 41 61 chr13 22182888 22182986 -97561912 - L3b LINE CR1 -136 1447 1352 2063 147 0 22 chr13 22183001 22183320 -97561578 - AluSx SINE Alu 0 312 1 2298 103 3 0 chr13 22183856 22184158 -97560740 + AluSq SINE Alu 1 303 -10 24 0 0 0 chr13 22184491 22184515 -97560383 + AT_rich Low_complexity Low_complexity 1 24 0 866 171 91 6 chr13 22184747 22184923 -97559975 - MIR SINE MIR -28 234 44 302 256 78 0 chr13 22186094 22186184 -97558714 + MIR SINE MIR 130 226 -36 696 179 40 104 chr13 22186225 22186426 -97558472 + MIR SINE MIR 67 254 -8 231 287 96 17 chr13 22186625 22186740 -97558158 - MIR SINE MIR -21 241 118 200 231 31 108 chr13 22186952 22187017 -97557881 - L2 LINE L2 0 3272 3213 24 0 0 0 chr13 22187252 22187276 -97557622 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr13 22187289 22187315 -97557583 + AT_rich Low_complexity Low_complexity 1 26 0 416 334 46 90 chr13 22187630 22188174 -97556724 + L2 LINE L2 2684 3271 -1 53 49 0 0 chr13 22190879 22190960 -97553938 + AT_rich Low_complexity Low_complexity 1 81 0 261 266 32 53 chr13 22191817 22191911 -97552987 + MIR3 SINE MIR 63 154 -54 252 263 0 62 chr13 22193026 22193106 -97551792 - L2 LINE L2 -12 3260 3186 961 167 25 20 chr13 22193310 22193508 -97551390 - L1MB2 LINE L1 -9 6162 5964 1773 159 42 88 chr13 22193507 22193787 -97551111 - MER47A DNA MER2_type -1957 366 107 2129 97 100 60 chr13 22193787 22194137 -97550761 - THE1B LTR MaLR 0 364 1 1773 159 42 88 chr13 22194137 22194240 -97550658 - MER47A DNA MER2_type -2216 107 1 2474 130 46 30 chr13 22194240 22194679 -97550219 - L1MB2 LINE L1 -217 5966 5521 1577 268 136 23 chr13 22194712 22195123 -97549775 - L1MC2 LINE L1 -17 8025 7662 2204 169 5 23 chr13 22195123 22195520 -97549378 - MLT1B LTR MaLR 0 390 1 1577 268 136 23 chr13 22195520 22195834 -97549064 - L1MC2 LINE L1 -380 7662 6254 396 302 191 31 chr13 22196091 22196316 -97548582 - MIR SINE MIR 0 262 2 313 285 120 48 chr13 22196839 22197003 -97547895 - MIR SINE MIR -61 147 5 613 268 68 0 chr13 22197139 22197344 -97547554 + MIR SINE MIR 44 262 0 263 189 105 102 chr13 22197643 22197848 -97547050 - MLT1I LTR MaLR -214 335 98 446 258 39 16 chr13 22198088 22198216 -97546682 + MER94 DNA DNA 1 131 -3 574 352 86 12 chr13 22198254 22198581 -97546317 + L3 LINE CR1 983 1333 -244 505 257 51 2 chr13 22198587 22198750 -97546148 + MIR SINE MIR 19 192 -68 1378 215 11 57 chr13 22198759 22198803 -97546095 - MLT2B3 LTR ERVL -1 553 509 423 0 0 0 chr13 22198803 22198850 -97546048 + (TG)n Simple_repeat Simple_repeat 2 48 0 1378 215 11 57 chr13 22198850 22199158 -97545740 - MLT2B3 LTR ERVL -45 509 217 542 167 9 0 chr13 22199158 22199266 -97545632 + GA-rich Low_complexity Low_complexity 1 109 0 1122 134 76 54 chr13 22199266 22199490 -97545408 - MLT2B2 LTR ERVL -285 230 2 543 277 36 54 chr13 22200018 22200242 -97544656 - MER102b DNA MER1_type -45 296 77 2216 101 0 3 chr13 22200497 22200793 -97544105 - AluSx SINE Alu -17 295 1 540 224 255 19 chr13 22201094 22201255 -97543643 + MER63A DNA MER1_type 12 210 0 389 250 53 88 chr13 22202194 22202353 -97542545 + MER87 LTR ERV1 1 148 -393 777 239 98 77 chr13 22202476 22202945 -97541953 + LTR26 LTR ERV1 115 593 -10 1797 133 25 3 chr13 22202976 22203262 -97541636 + AluSx SINE Alu 1 292 -20 231 313 42 10 chr13 22203338 22203434 -97541464 + L2 LINE L2 3215 3313 0 441 304 77 14 chr13 22203932 22204139 -97540759 - MIR SINE MIR -19 243 24 2658 215 16 23 chr13 22204538 22205096 -97539802 + MLT2B3 LTR ERVL 1 554 0 250 323 55 81 chr13 22205915 22206150 -97538748 + L2 LINE L2 3037 3265 -7 2071 74 0 4 chr13 22206201 22206471 -97538427 + AluY SINE Alu 36 304 -7 2013 138 0 3 chr13 22206489 22206794 -97538104 + AluSx SINE Alu 3 306 -6 2005 126 13 3 chr13 22206794 22207096 -97537802 + AluSq SINE Alu 1 305 -8 198 326 12 23 chr13 22207438 22207524 -97537374 - MIR SINE MIR -43 219 135 1652 166 7 0 chr13 22211216 22211512 -97533386 + AluSx SINE Alu 1 298 -14 509 318 104 33 chr13 22211797 22211941 -97532957 - L1M4 LINE L1 -832 5314 5182 1788 150 27 0 chr13 22211941 22212234 -97532664 - AluJo SINE Alu -11 301 1 509 318 104 33 chr13 22212234 22212667 -97532231 - L1M4 LINE L1 -964 5182 4696 382 233 90 65 chr13 22212710 22212989 -97531909 - L1M4 LINE L1 -1538 4608 4323 1998 113 17 0 chr13 22213252 22213543 -97531355 - AluSq SINE Alu -15 298 3 468 202 52 88 chr13 22213551 22213734 -97531164 - L1M4 LINE L1 -2884 3262 3091 2026 97 3 7 chr13 22213734 22214023 -97530875 - AluSx SINE Alu -24 288 1 468 202 52 88 chr13 22214023 22214111 -97530787 - L1M4 LINE L1 -3055 3091 3001 804 227 92 14 chr13 22214111 22214393 -97530505 - MER113 DNA MER1_type? -190 331 28 2256 61 41 0 chr13 22215387 22215680 -97529218 - AluY SINE Alu -6 305 1 287 263 120 38 chr13 22215753 22215886 -97529012 + Charlie8 DNA MER1_type 138 281 -2136 26 0 0 0 chr13 22217023 22217049 -97527849 + AT_rich Low_complexity Low_complexity 1 26 0 3872 93 8 0 chr13 22217058 22217586 -97527312 + L1PB1 LINE L1 5620 6151 0 2206 255 46 28 chr13 22218359 22219113 -97525785 + L1ME1 LINE L1 5393 6160 -6 611 152 27 0 chr13 22219132 22219244 -97525654 - L1MA5 LINE L1 -6 6294 6180 2314 43 0 65 chr13 22219246 22219569 -97525329 - AluY SINE Alu -9 302 1 2317 52 0 58 chr13 22220222 22220552 -97524346 + AluY SINE Alu 1 311 0 23 0 0 0 chr13 22221625 22221648 -97523250 + GC_rich Low_complexity Low_complexity 1 23 0 197 227 0 0 chr13 22223004 22223048 -97521850 + L2 LINE L2 3270 3313 0 645 174 91 0 chr13 22224429 22224550 -97520348 + AluJ SINE Alu 2 133 -169 209 159 23 0 chr13 22224577 22224621 -97520277 + GA-rich Low_complexity Low_complexity 1 45 0 1976 88 63 0 chr13 22224635 22224920 -97519978 + AluSq SINE Alu 1 303 -10 929 169 7 0 chr13 22224920 22225074 -97519824 + AluJ SINE Alu 134 288 -24 208 337 48 12 chr13 22225117 22225200 -97519698 - L2 LINE L2 -5 3308 3223 21 0 0 0 chr13 22225609 22225630 -97519268 + AT_rich Low_complexity Low_complexity 1 21 0 2746 164 71 9 chr13 22225630 22226178 -97518720 - L1MB3 LINE L1 -1 6182 5601 235 239 11 68 chr13 22226844 22226932 -97517966 + (CCCA)n Simple_repeat Simple_repeat 2 84 0 188 267 78 44 chr13 22226934 22227024 -97517874 - L2 LINE L2 -16 3256 3164 345 62 0 0 chr13 22227796 22227844 -97517054 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 35 0 0 chr13 22227872 22227901 -97516997 + AT_rich Low_complexity Low_complexity 1 29 0 409 231 52 23 chr13 22228120 22228331 -97516567 + Charlie7 DNA MER1_type 2317 2612 0 218 269 0 30 chr13 22228375 22228442 -97516456 + G-rich Low_complexity Low_complexity 4 68 0 725 238 168 43 chr13 22229583 22229813 -97515085 - MER58B DNA MER1_type -2079 341 63 1752 169 10 7 chr13 22229813 22230121 -97514777 + AluJo SINE Alu 1 309 -3 725 238 168 43 chr13 22230121 22230193 -97514705 - MER58B DNA MER1_type -2357 63 1 367 346 82 0 chr13 22230340 22230522 -97514376 - MIR SINE MIR -52 210 14 1763 178 0 0 chr13 22230912 22231210 -97513688 - AluJb SINE Alu -14 298 1 755 180 0 0 chr13 22231246 22231374 -97513524 - FLAM_C SINE Alu -3 130 3 436 117 59 3 chr13 22232744 22232829 -97512069 - L1PA8 LINE L1 -2 6172 6085 769 239 188 35 chr13 22233127 22233525 -97511373 - MLT1C LTR MaLR -3 464 6 1483 200 51 34 chr13 22233526 22233881 -97511017 - MLT1C-int LTR MaLR -1 1370 1010 24 0 0 0 chr13 22234446 22234470 -97510428 + GC_rich Low_complexity Low_complexity 1 24 0 181 326 132 23 chr13 22236053 22236182 -97508716 - L2 LINE L2 -20 3293 3151 407 344 78 9 chr13 22236192 22236410 -97508488 + MIR SINE MIR 20 252 -10 312 316 85 17 chr13 22236640 22236817 -97508081 - MIR SINE MIR 0 262 74 204 97 0 0 chr13 22236862 22236893 -97508005 + (TA)n Simple_repeat Simple_repeat 2 32 0 842 137 0 0 chr13 22237781 22237912 -97506986 - FLAM_C SINE Alu -1 142 12 1609 181 52 6 chr13 22238299 22238625 -97506273 - MER2 DNA MER2_type -2 342 2 1235 104 6 0 chr13 22239797 22239980 -97504918 + AluY SINE Alu 125 308 -3 281 223 107 27 chr13 22240529 22240641 -97504257 + MIR SINE MIR 87 207 -55 254 326 70 0 chr13 22242220 22242306 -97502592 - MIR SINE MIR -150 112 21 1067 167 0 36 chr13 22242329 22242521 -97502377 + AluJb SINE Alu 123 307 -5 186 43 0 0 chr13 22242522 22242545 -97502353 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 888 279 152 0 chr13 22242833 22243156 -97501742 + L2 LINE L2 2923 3294 -19 23 33 0 0 chr13 22244074 22244104 -97500794 + AT_rich Low_complexity Low_complexity 1 30 0 324 226 96 26 chr13 22244436 22244551 -97500347 - MER103 DNA DNA -1 165 43 293 285 71 52 chr13 22244800 22245168 -97499730 + L1 LINE L1 4575 4949 -1197 23 33 0 0 chr13 22245181 22245211 -97499687 + AT_rich Low_complexity Low_complexity 1 30 0 304 224 0 126 chr13 22245352 22245526 -97499372 + L1 LINE L1 5222 5373 -773 304 316 53 0 chr13 22245633 22245747 -97499151 + MIR SINE MIR 109 228 -34 533 209 143 33 chr13 22246064 22246274 -97498624 + L1ME4a LINE L1 5807 6039 -82 315 0 0 0 chr13 22246839 22246874 -97498024 + (TG)n Simple_repeat Simple_repeat 2 36 0 321 212 156 56 chr13 22247454 22247580 -97497318 - MIR3 SINE MIR -1 207 69 213 185 46 46 chr13 22248340 22248405 -97496493 - MIR SINE MIR -55 207 143 619 83 12 12 chr13 22249365 22249449 -97495449 - AluS SINE Alu -228 85 2 822 167 43 0 chr13 22250598 22250736 -97494162 - FRAM SINE Alu -29 147 4 2335 105 0 0 chr13 22250801 22251106 -97493792 - AluSx SINE Alu -6 306 2 33 90 0 0 chr13 22251233 22251322 -97493576 + AT_rich Low_complexity Low_complexity 1 89 0 223 322 42 42 chr13 22253304 22253447 -97491451 + L2 LINE L2 2902 3044 -228 38 0 0 0 chr13 22253670 22253708 -97491190 + AT_rich Low_complexity Low_complexity 1 38 0 211 281 67 11 chr13 22253719 22253808 -97491090 - MIR SINE MIR -51 211 118 1659 268 180 23 chr13 22253931 22255171 -97489727 - L2 LINE L2 -1 3312 1891 2235 111 0 3 chr13 22255659 22255957 -97488941 + AluSx SINE Alu 1 297 -15 2023 130 0 14 chr13 22256877 22257170 -97487728 - AluSx SINE Alu -13 299 11 2226 95 113 9 chr13 22257963 22258290 -97486608 - MER46B DNA MER2_type 0 236 1 970 133 27 0 chr13 22260519 22260669 -97484229 + MER5A DNA MER1_type 1 154 -35 185 0 40 0 chr13 22260937 22260962 -97483936 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 230 347 45 40 chr13 22260963 22261139 -97483759 + L2 LINE L2 2682 2858 -456 231 350 65 24 chr13 22261328 22261451 -97483447 + L2 LINE L2 2960 3087 -185 213 323 0 0 chr13 22261829 22261894 -97483004 - MIR SINE MIR -3 259 195 524 244 7 30 chr13 22261919 22262054 -97482844 - L2 LINE L2 -1 3312 3181 250 240 0 0 chr13 22262049 22262099 -97482799 - MIR SINE MIR -200 62 13 * 463 70 14 0 chr13 22263130 22263201 -97481697 - AluSc SINE Alu -2 307 236 1204 180 0 42 chr13 22264022 22264261 -97480637 - AluJo SINE Alu 0 312 84 44 84 0 0 chr13 22264602 22264709 -97480189 + AT_rich Low_complexity Low_complexity 1 107 0 527 164 52 124 chr13 22264918 22265195 -97479703 + MER66A LTR ERV1 163 304 -174 32 26 0 0 chr13 22266444 22266483 -97478415 + AT_rich Low_complexity Low_complexity 1 39 0 2292 125 0 0 chr13 22266707 22267019 -97477879 - AluSx SINE Alu 0 312 1 21 0 0 0 chr13 22267241 22267262 -97477636 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 22267420 22267440 -97477458 + (A)n Simple_repeat Simple_repeat 1 20 0 1231 56 0 0 chr13 22267443 22267585 -97477313 - AluY SINE Alu -169 142 1 198 191 0 0 chr13 22267649 22267691 -97477207 + CT-rich Low_complexity Low_complexity 4 45 0 2418 42 0 51 chr13 22268118 22268430 -97476468 + AluY SINE Alu 1 296 -15 249 246 35 0 chr13 22269880 22269937 -97474961 - L2 LINE L2 -3 3269 3211 34 84 0 0 chr13 22270007 22270090 -97474808 + AT_rich Low_complexity Low_complexity 1 83 0 2193 109 17 0 chr13 22271083 22271376 -97473522 - AluSx SINE Alu -14 298 1 981 186 25 0 chr13 22271943 22272104 -97472794 - FAM SINE Alu -9 166 2 1647 169 20 10 chr13 22272120 22272416 -97472482 + AluJb SINE Alu 2 300 -12 1847 168 0 3 chr13 22273583 22273887 -97471011 + AluJb SINE Alu 1 303 -9 23 0 0 0 chr13 22274045 22274068 -97470830 + AT_rich Low_complexity Low_complexity 1 23 0 1049 172 78 5 chr13 22274130 22274334 -97470564 - L1PA6 LINE L1 -25 6129 5911 1036 125 0 36 chr13 22274475 22274641 -97470257 + MER4B LTR ERV1 362 521 -89 3568 100 8 60 chr13 22274641 22275283 -97469615 + MER4B LTR ERV1 1 779 0 472 63 16 0 chr13 22275284 22275347 -97469551 + MER4B LTR ERV1 547 610 0 180 0 0 0 chr13 22276021 22276041 -97468857 + (TC)n Simple_repeat Simple_repeat 1 20 0 351 319 49 16 chr13 22276756 22276841 -97468057 - MIR SINE MIR -58 204 123 1730 161 3 42 chr13 22276841 22277152 -97467746 + AluSx SINE Alu 1 299 -13 351 319 49 16 chr13 22277152 22277251 -97467647 - MIR SINE MIR -139 123 14 195 318 111 32 chr13 22284301 22284518 -97460380 + L2 LINE L2 2862 3095 -177 352 215 26 23 chr13 22284604 22284719 -97460179 - L1MC/D LINE L1 -684 5470 5369 870 280 52 0 chr13 22284889 22285175 -97459723 + L1ME1 LINE L1 29 329 -6067 2899 211 49 40 chr13 22285211 22285497 -97459401 + L1ME1 LINE L1 4566 4848 -1387 2158 127 0 3 chr13 22285497 22285796 -97459102 + AluSx SINE Alu 1 298 -14 2899 211 49 40 chr13 22285796 22286772 -97458126 + L1ME1 LINE L1 4848 5836 -399 2385 161 33 0 chr13 22286790 22287188 -97457710 + MSTB LTR MaLR 16 426 0 867 226 134 24 chr13 22287188 22287516 -97457382 + L1ME1 LINE L1 5867 6230 -5 605 199 41 23 chr13 22287783 22287954 -97456944 + MLT1D LTR MaLR 134 307 -198 1821 179 22 44 chr13 22287954 22288362 -97456536 + MER57A LTR ERV1 1 399 -4 660 188 171 0 chr13 22288456 22288626 -97456272 + MLT1D LTR MaLR 304 502 -3 1011 200 44 5 chr13 22289583 22289788 -97455110 - MER20 DNA MER1_type 0 219 7 196 248 128 46 chr13 22290265 22290374 -97454524 - L3 LINE CR1 -193 1384 1267 204 40 0 0 chr13 22290725 22290750 -97454148 + (A)n Simple_repeat Simple_repeat 1 25 0 189 178 111 0 chr13 22291344 22291389 -97453509 - MIR SINE MIR -107 101 52 260 234 47 0 chr13 22291795 22291859 -97453039 - MIR SINE MIR 0 262 196 453 237 69 58 chr13 22291961 22292134 -97452764 + MER69A DNA AcHobo 3 177 0 547 237 39 77 chr13 22292168 22292375 -97452523 + MLT1J1 LTR MaLR 248 446 0 219 214 200 0 chr13 22292425 22292495 -97452403 - MIR SINE MIR -84 124 41 219 300 40 10 chr13 22292601 22292701 -97452197 + MIR SINE MIR 112 214 -48 310 352 93 42 chr13 22293820 22294546 -97450352 - L2 LINE L2 -2 3270 2519 2244 180 8 0 chr13 22294557 22294919 -97449979 - MLT1A1 LTR MaLR 0 365 1 2222 102 0 7 chr13 22295185 22295479 -97449419 - AluSc SINE Alu -17 292 1 767 316 128 9 chr13 22295787 22296242 -97448656 + L1MC1 LINE L1 5296 5804 -2004 2113 165 69 17 chr13 22296269 22296374 -97448524 + L1MB3 LINE L1 5725 5823 -360 2070 138 0 10 chr13 22296374 22296685 -97448213 + AluSx SINE Alu 1 308 -4 2113 165 69 17 chr13 22296685 22296985 -97447913 + L1MB3 LINE L1 5823 6151 -32 279 118 39 20 chr13 22297544 22297595 -97447303 + MER66A LTR ERV1 287 338 -140 405 0 0 0 chr13 22297595 22297640 -97447258 + (CA)n Simple_repeat Simple_repeat 2 46 0 231 368 157 8 chr13 22300183 22300425 -97444473 + L3b LINE CR1 1204 1481 -102 355 278 66 91 chr13 22302127 22302325 -97442573 + MIR SINE MIR 15 207 -55 462 245 25 80 chr13 22302330 22302493 -97442405 + L1MEd LINE L1 92 245 -5960 1395 195 44 13 chr13 22302827 22303048 -97441850 + L1MC1 LINE L1 6009 6222 -122 429 109 0 0 chr13 22303048 22303112 -97441786 + (TG)n Simple_repeat Simple_repeat 2 65 0 1395 195 44 13 chr13 22303112 22303171 -97441727 + L1MC1 LINE L1 6222 6278 -66 2816 66 3 21 chr13 22303171 22303548 -97441350 + L1PA13 LINE L1 5792 6161 -2 1395 195 44 13 chr13 22303548 22303608 -97441290 + L1MC1 LINE L1 6278 6344 0 380 127 28 0 chr13 22303647 22303718 -97441180 + MER53 DNA DNA 117 189 0 701 305 47 72 chr13 22303720 22303937 -97440961 + L1MEd LINE L1 546 767 -5438 734 194 8 8 chr13 22303937 22304061 -97440837 + FLAM_A SINE Alu 1 124 -9 701 305 47 72 chr13 22304061 22304413 -97440485 + L1MEd LINE L1 767 1101 -5104 305 263 144 54 chr13 22304501 22304960 -97439938 + L1MEd LINE L1 1311 1705 -871 22 94 0 0 chr13 22305099 22305163 -97439735 + AT_rich Low_complexity Low_complexity 1 64 0 494 281 56 6 chr13 22305319 22305479 -97439419 - MIR SINE MIR -21 241 74 396 231 69 43 chr13 22305490 22305727 -97439171 + L1ME3A LINE L1 3087 3333 -2882 2437 83 0 16 chr13 22305727 22306040 -97438858 + AluSg SINE Alu 1 308 -2 396 231 69 43 chr13 22306040 22306079 -97438819 + L1ME3A LINE L1 3333 3370 -2845 2307 72 0 75 chr13 22306258 22306591 -97438307 + AluY SINE Alu 1 308 -3 1023 275 95 32 chr13 22306843 22307094 -97437804 + L1ME3A LINE L1 5092 5326 -905 1930 119 19 0 chr13 22307094 22307362 -97437536 + AluSg SINE Alu 38 310 0 1023 275 95 32 chr13 22307362 22307893 -97437005 + L1ME3A LINE L1 5326 5919 -312 249 57 0 0 chr13 22308191 22308226 -97436672 + (TA)n Simple_repeat Simple_repeat 2 36 0 727 159 0 40 chr13 22308257 22308383 -97436515 - FLAM_A SINE Alu -12 121 1 24 53 0 0 chr13 22308439 22308477 -97436421 + AT_rich Low_complexity Low_complexity 1 38 0 477 50 0 0 chr13 22308768 22308828 -97436070 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 1685 204 86 53 chr13 22309214 22309703 -97435195 - MLT1D LTR MaLR 0 505 1 2736 94 25 0 chr13 22309858 22310220 -97434678 + L1PA6 LINE L1 5784 6154 0 466 202 126 0 chr13 22310525 22310644 -97434254 + Charlie5 DNA MER1_type 2424 2557 -55 220 379 152 7 chr13 22310819 22311233 -97433665 + L2 LINE L2 2481 2954 -360 478 223 0 0 chr13 22311640 22311743 -97433155 + L1MA9 LINE L1 6173 6275 -37 1064 234 62 34 chr13 22312282 22312670 -97432228 + L1M4 LINE L1 4187 4585 -1561 * 14012 192 36 14 chr13 22312647 22317633 -97427265 - L1PA16 LINE L1 -9 6860 1750 2270 111 0 10 chr13 22317633 22317939 -97426959 - AluSp SINE Alu -10 303 1 14012 192 36 14 chr13 22317939 22318350 -97426548 - L1PA16 LINE L1 -5119 1750 1349 373 147 37 110 chr13 22319085 22319194 -97425704 + L1M3 LINE L1 5679 5779 -399 2427 67 0 0 chr13 22319201 22319501 -97425397 + AluY SINE Alu 1 300 -11 1476 204 71 12 chr13 22319713 22320051 -97424847 + MER47A DNA MER2_type 9 366 0 2108 147 46 11 chr13 22320058 22320405 -97424493 + MER46B DNA MER2_type 3 236 0 896 217 21 5 chr13 22320992 22321181 -97423717 + MER58A DNA MER1_type 30 221 -3 233 278 0 0 chr13 22322206 22322278 -97422620 + CT-rich Low_complexity Low_complexity 3 74 0 337 211 10 10 chr13 22322318 22322422 -97422476 + CT-rich Low_complexity Low_complexity 2 105 0 391 246 36 169 chr13 22322663 22322911 -97421987 + MIR SINE MIR 37 251 -11 21 0 0 0 chr13 22322940 22322961 -97421937 + AT_rich Low_complexity Low_complexity 1 21 0 1577 169 64 0 chr13 22323991 22324286 -97420612 + L1MB8 LINE L1 5653 5966 -212 735 184 19 25 chr13 22324287 22324445 -97420453 + L1MB8 LINE L1 6021 6177 -1 918 216 0 0 chr13 22324484 22324660 -97420238 - AluJb SINE Alu 0 312 137 23 0 0 0 chr13 22324733 22324756 -97420142 + AT_rich Low_complexity Low_complexity 1 23 0 2205 94 0 19 chr13 22325360 22325668 -97419230 - AluSc SINE Alu -7 302 1 332 273 182 0 chr13 22326119 22326251 -97418647 + L2 LINE L2 2712 2867 -447 25 0 0 0 chr13 22326596 22326621 -97418277 + AT_rich Low_complexity Low_complexity 1 25 0 2060 170 80 18 chr13 22326716 22327115 -97417783 + MSTB LTR MaLR 1 424 -2 3096 181 27 9 chr13 22327609 22328161 -97416737 + MER68 LTR ERV1 1 562 0 883 210 19 12 chr13 22328507 22328669 -97416229 + FAM SINE Alu 1 163 -12 22 0 0 0 chr13 22328671 22328693 -97416205 + AT_rich Low_complexity Low_complexity 1 22 0 441 169 45 11 chr13 22332302 22332391 -97412507 - MLT1J LTR MaLR 0 511 420 706 225 66 44 chr13 22332528 22332755 -97412143 - MLT1J LTR MaLR -267 244 13 23 54 0 0 chr13 22333209 22333246 -97411652 + AT_rich Low_complexity Low_complexity 1 37 0 2440 150 92 9 chr13 22333562 22334010 -97410888 + MER31A LTR ERV1 1 485 0 21 0 0 0 chr13 22334650 22334671 -97410227 + AT_rich Low_complexity Low_complexity 1 21 0 270 250 53 0 chr13 22336125 22336201 -97408697 - MLT1G LTR MaLR -13 577 498 474 270 101 30 chr13 22336316 22336583 -97408315 - MLT1G LTR MaLR -290 300 15 1826 159 14 3 chr13 22336755 22337051 -97407847 - AluSx SINE Alu -13 299 1 1573 223 58 62 chr13 22337268 22337330 -97407568 - Charlie1 DNA MER1_type 0 2761 2700 1899 161 3 3 chr13 22337330 22337640 -97407258 + AluSx SINE Alu 1 310 -2 1573 223 58 62 chr13 22337640 22338107 -97406791 - Charlie1 DNA MER1_type -61 2700 2234 213 316 68 34 chr13 22338666 22338783 -97406115 + MIR SINE MIR 81 201 -61 386 305 49 43 chr13 22339910 22340074 -97404824 + L2 LINE L2 3104 3268 -4 2095 116 10 0 chr13 22340558 22340860 -97404038 + AluSx SINE Alu 1 305 -7 637 67 56 0 chr13 22341242 22341331 -97403567 - AluY SINE Alu -7 304 211 201 39 0 0 chr13 22342141 22342167 -97402731 + (CA)n Simple_repeat Simple_repeat 2 27 0 400 111 0 0 chr13 22342197 22342251 -97402647 - MSTD LTR MaLR -342 54 1 367 187 157 30 chr13 22342324 22342451 -97402447 + L1ME LINE L1 849 995 -5075 1410 164 100 36 chr13 22342451 22342732 -97402166 + AluJo SINE Alu 1 299 -3 252 182 121 0 chr13 22342755 22342821 -97402077 + FAM SINE Alu 105 178 -1 695 216 51 47 chr13 22342821 22343076 -97401822 + L1ME LINE L1 2091 2346 -3734 * 5702 230 69 57 chr13 22343073 22343233 -97401665 + L1ME LINE L1 3033 3190 -2890 2023 140 3 10 chr13 22343233 22343547 -97401351 + AluSx SINE Alu 1 312 0 5702 230 69 57 chr13 22343547 22343772 -97401126 + L1ME LINE L1 3190 3411 -2669 1541 188 11 31 chr13 22343772 22344059 -97400839 - AluJo SINE Alu -29 283 3 5702 230 69 57 chr13 22344059 22344954 -97399944 + L1ME LINE L1 3411 4294 -1786 1807 118 0 4 chr13 22344954 22345208 -97399690 + L1PB1 LINE L1 5896 6148 -3 5702 230 69 57 chr13 22345208 22345458 -97399440 + L1ME LINE L1 4294 4539 -1541 2235 109 7 3 chr13 22345458 22345760 -97399138 + AluSq SINE Alu 1 303 -10 5702 230 69 57 chr13 22345760 22346383 -97398515 + L1ME LINE L1 4539 5219 -861 2371 71 7 0 chr13 22346383 22346677 -97398221 + AluY SINE Alu 1 296 -15 5702 230 69 57 chr13 22346677 22346773 -97398125 + L1ME LINE L1 5219 5312 -768 559 123 26 70 chr13 22346774 22346888 -97398010 - FLAM_C SINE Alu -6 137 29 269 262 37 47 chr13 22346889 22346996 -97397902 + L1ME LINE L1 5444 5549 -547 2087 125 17 0 chr13 22346996 22347291 -97397607 - AluSx SINE Alu -12 300 1 1863 165 0 16 chr13 22347339 22347648 -97397250 + AluJb SINE Alu 1 304 -8 875 300 93 39 chr13 22347710 22348203 -97396695 + LTR33 LTR ERVL 2 521 0 7794 49 6 10 chr13 22348339 22349517 -97395381 + SVA Other Other 326 1382 -4 1564 177 78 27 chr13 22349827 22350161 -97394737 - MSTD LTR MaLR -45 351 1 992 178 194 62 chr13 22350184 22350256 -97394642 + MER2 DNA MER2_type 1 62 -282 252 0 0 0 chr13 22350256 22350284 -97394614 + (TA)n Simple_repeat Simple_repeat 2 29 0 2107 77 7 39 chr13 22350286 22350572 -97394326 - AluY SINE Alu -34 277 1 992 178 194 62 chr13 22350572 22350800 -97394098 + MER2 DNA MER2_type 62 344 0 1681 185 0 17 chr13 22350837 22351134 -97393764 + AluJb SINE Alu 1 292 -20 944 302 47 15 chr13 22351200 22351601 -97393297 + L1MC/D LINE L1 5278 5691 -2117 4940 191 8 43 chr13 22351814 22351958 -97392940 - HSMAR1 DNA Mariner 0 1287 1140 2175 106 13 3 chr13 22351958 22352259 -97392639 - AluSp SINE Alu -1 312 9 4940 191 8 43 chr13 22352259 22352956 -97391942 - HSMAR1 DNA Mariner -147 1140 475 2196 120 0 0 chr13 22352968 22353259 -97391639 + AluSx SINE Alu 1 291 -21 3310 55 59 7 chr13 22353259 22353697 -97391201 + L1PA7 LINE L1 5686 6146 -8 2258 120 0 7 chr13 22353706 22354014 -97390884 + AluSg SINE Alu 1 306 -4 324 259 62 49 chr13 22354469 22354631 -97390267 + MER65-int LTR ERV1 98 261 -4610 309 229 91 48 chr13 22355377 22355587 -97389311 + L1MC5 LINE L1 7642 7860 -101 843 219 11 38 chr13 22355816 22355999 -97388899 - MER20 DNA MER1_type -4 215 38 2033 134 0 0 chr13 22357575 22357859 -97387039 - AluSx SINE Alu -28 284 1 180 277 0 0 chr13 22359024 22359071 -97385827 - L2 LINE L2 -1 3271 3225 448 257 13 40 chr13 22359533 22359685 -97385213 - MER104 DNA Tc2 0 180 33 1652 193 0 7 chr13 22359784 22360080 -97384818 + AluJo SINE Alu 1 294 -18 471 262 146 45 chr13 22360093 22360321 -97384577 - MIR SINE MIR -11 251 4 5057 157 32 60 chr13 22361694 22362793 -97382105 + MER11C LTR ERVK 3 1070 -1 6119 191 36 27 chr13 22363643 22365078 -97379820 - L1 LINE L1 -810 5336 3889 1447 157 19 83 chr13 22365078 22365390 -97379508 - AluSq SINE Alu -21 292 1 617 225 43 0 chr13 22365391 22365529 -97379369 - FRAM SINE Alu -5 171 28 273 206 68 14 chr13 22366194 22366212 -97378686 + L1MC4 LINE L1 6460 6476 -1566 3331 203 67 85 chr13 22366212 22367092 -97377806 + MER6 DNA MER2_type 1 864 -1 273 206 68 14 chr13 22367092 22367146 -97377752 + L1MC4 LINE L1 6476 6536 -1506 3461 175 50 5 chr13 22367146 22367804 -97377094 + Tigger2 DNA MER2_type 2 689 -2029 863 208 38 32 chr13 22367850 22368078 -97376820 + L1MC4 LINE L1 7016 7241 -801 524 113 62 0 chr13 22368078 22368158 -97376740 + L1PA16 LINE L1 6072 6156 -10 863 208 38 32 chr13 22368158 22368346 -97376552 + L1MC4 LINE L1 7241 7662 -380 2283 98 3 0 chr13 22368384 22368680 -97376218 + AluSq SINE Alu 1 297 -16 2477 51 10 0 chr13 22371165 22371457 -97373441 + AluY SINE Alu 1 295 -16 319 198 32 19 chr13 22371563 22371720 -97373178 + (TA)n Simple_repeat Simple_repeat 2 160 0 237 322 23 0 chr13 22371783 22371870 -97373028 - MIR3 SINE MIR -46 162 74 879 199 11 69 chr13 22372400 22372662 -97372236 + pTR5 LTR ERV1 782 1028 -1410 1712 117 0 146 chr13 22372749 22373144 -97371754 + pTR5 LTR ERV1 1352 2009 -429 323 290 0 0 chr13 22373144 22373244 -97371654 + LTR30 LTR ERV1 525 624 -98 834 120 8 0 chr13 22373244 22373361 -97371537 + LTR12 LTR ERV1 359 476 -238 261 254 0 60 chr13 22379375 22379509 -97365389 + (TTGGGG)n Simple_repeat Simple_repeat 1 126 0 285 62 0 42 chr13 22379811 22379859 -97365039 + Alu SINE Alu 257 302 0 189 0 0 0 chr13 22379910 22379931 -97364967 + (CA)n Simple_repeat Simple_repeat 2 22 0 1457 163 16 16 chr13 22379948 22380200 -97364698 - AluJo SINE Alu -24 288 37 915 231 62 30 chr13 22380344 22380734 -97364164 - MLT1A1 LTR MaLR -2 363 10 543 245 100 52 chr13 22381441 22381491 -97363407 + L1M4 LINE L1 3800 3846 -2300 2044 142 3 7 chr13 22381491 22381801 -97363097 + AluSx SINE Alu 1 309 -3 543 245 100 52 chr13 22381801 22382040 -97362858 + L1M4 LINE L1 3846 4103 -2043 556 189 0 0 chr13 22382040 22382135 -97362763 - AluJb SINE Alu -12 300 206 520 121 0 36 chr13 22382909 22382992 -97361906 + FRAM SINE Alu 70 149 -27 2010 130 48 0 chr13 22383515 22383808 -97361090 + AluSx SINE Alu 1 307 -5 3310 170 108 64 chr13 22383813 22385149 -97359749 - LTR19-int LTR ERV1 -2415 3531 478 2106 127 3 3 chr13 22387712 22388011 -97356887 + AluSc SINE Alu 1 299 -10 258 273 102 0 chr13 22388733 22388821 -97356077 + MIR SINE MIR 93 189 -73 1986 138 0 0 chr13 22389489 22389778 -97355120 - AluSg1 SINE Alu -20 289 1 22 0 0 0 chr13 22390835 22390857 -97354041 + AT_rich Low_complexity Low_complexity 1 22 0 2753 14 0 0 chr13 22391152 22391472 -97353426 + AluYa5 SINE Alu 1 320 0 188 200 20 0 chr13 22392990 22393040 -97351858 + (TA)n Simple_repeat Simple_repeat 1 51 0 184 224 158 0 chr13 22393286 22393362 -97351536 + MIR SINE MIR 175 262 0 2424 87 0 6 chr13 22395348 22395660 -97349238 + AluY SINE Alu 1 310 -1 1512 108 42 12 chr13 22395914 22396154 -97348744 + Tigger2 DNA MER2_type 2418 2664 -54 654 169 79 66 chr13 22396228 22396518 -97348380 + MLT1C LTR MaLR 106 390 0 253 323 0 0 chr13 22399668 22399733 -97345165 + polypyrimidine Low_complexity Low_complexity 2 66 0 6858 133 44 15 chr13 22399747 22399797 -97345101 - Tigger3b DNA MER2_type -1797 1231 1184 2252 102 0 23 chr13 22399797 22400100 -97344798 + AluSg SINE Alu 1 296 -14 6858 133 44 15 chr13 22400100 22401244 -97343654 - Tigger3b DNA MER2_type -1844 1184 2 381 255 35 80 chr13 22401246 22401709 -97343189 - L1MC5 LINE L1 -187 7774 7333 933 202 16 21 chr13 22401787 22401975 -97342923 + AluJo SINE Alu 119 305 -7 234 325 0 0 chr13 22402113 22402193 -97342705 - L1MC4 LINE L1 -773 7269 7190 308 299 62 10 chr13 22405511 22405608 -97339290 - MIR SINE MIR -114 148 47 181 249 45 141 chr13 22405596 22405773 -97339125 + MIR SINE MIR 53 212 -50 * 511 286 81 5 chr13 22406621 22406806 -97338092 + MIR SINE MIR 59 257 -5 243 0 0 0 chr13 22406807 22406834 -97338064 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1683 114 82 7 chr13 22406915 22407221 -97337677 + MER46B DNA MER2_type 32 235 -1 191 255 0 20 chr13 22407287 22407338 -97337560 + L2 LINE L2 2685 2734 -580 800 110 31 16 chr13 22407626 22407753 -97337145 + AluSg/x SINE Alu 182 310 0 422 252 53 27 chr13 22407861 22408044 -97336854 + L1ME LINE L1 5473 5657 -464 509 247 84 6 chr13 22408132 22408298 -97336600 + MER97b DNA MER1_type? 1 179 -874 1018 219 73 0 chr13 22409090 22409337 -97335561 - L1MCa LINE L1 -6143 283 19 268 302 95 28 chr13 22409752 22410004 -97334894 + L2 LINE L2 2422 2690 -624 2400 73 7 7 chr13 22410538 22410840 -97334058 - AluSg SINE Alu -8 302 1 180 236 83 42 chr13 22410943 22411015 -97333883 - L2 LINE L2 0 3272 3198 25 0 0 0 chr13 22411299 22411324 -97333574 + AT_rich Low_complexity Low_complexity 1 25 0 320 125 18 0 chr13 22411337 22411393 -97333505 + LTR54 LTR ERV1 416 472 -38 462 254 8 16 chr13 22413218 22413340 -97331558 + L2 LINE L2 3193 3313 0 398 276 125 0 chr13 22414243 22414395 -97330503 - MIR SINE MIR 0 262 92 195 339 89 40 chr13 22414770 22414894 -97330004 - MIR3 SINE MIR -65 143 14 548 282 74 28 chr13 22414921 22415137 -97329761 + MIR SINE MIR 12 237 -25 1898 155 0 13 chr13 22415210 22415513 -97329385 + AluJb SINE Alu 1 299 -13 215 222 0 79 chr13 22415523 22415586 -97329312 + MIR SINE MIR 198 255 -7 21 0 0 0 chr13 22415704 22415725 -97329173 + AT_rich Low_complexity Low_complexity 1 21 0 317 172 62 0 chr13 22417659 22417723 -97327175 - MIR SINE MIR -72 190 123 2138 116 14 0 chr13 22418342 22418636 -97326262 + AluSx SINE Alu 6 303 -9 219 354 23 31 chr13 22419073 22419203 -97325695 - L2 LINE L2 -5 3308 3180 30 0 0 0 chr13 22420393 22420423 -97324475 + AT_rich Low_complexity Low_complexity 1 30 0 655 287 171 6 chr13 22420697 22421031 -97323867 + L3 LINE CR1 666 1054 -523 2422 123 40 38 chr13 22421233 22421656 -97323242 - MSTC LTR MaLR -4 424 1 1488 210 89 23 chr13 22421822 22422251 -97322647 + MSTB2 LTR MaLR 1 457 0 369 302 173 56 chr13 22422775 22423116 -97321782 + L3 LINE CR1 1079 1459 -118 645 244 141 53 chr13 22423303 22423794 -97321104 - L1ME2 LINE L1 -224 5938 5406 751 193 0 15 chr13 22423862 22423997 -97320901 - FLAM_A SINE Alu 0 133 1 283 91 0 0 chr13 22424216 22424260 -97320638 - AluJo SINE Alu -6 294 251 977 170 19 0 chr13 22424260 22424419 -97320479 - AluJo SINE Alu -150 162 1 1960 273 76 56 chr13 22424425 22425701 -97319197 - L1ME2 LINE L1 -1097 5049 3725 1753 130 4 0 chr13 22425701 22425954 -97318944 - AluSx SINE Alu -10 302 49 1960 273 76 56 chr13 22425954 22426470 -97318428 - L1ME2 LINE L1 -2421 3725 3221 1718 139 57 36 chr13 22426478 22426810 -97318088 + MER2 DNA MER2_type 7 345 0 337 280 115 37 chr13 22427043 22427610 -97317288 - L1ME2 LINE L1 -3214 2932 2322 208 191 48 0 chr13 22429728 22429770 -97315128 + MIR SINE MIR 217 260 -2 267 216 13 150 chr13 22429771 22429824 -97315074 + MER94 DNA DNA 1 60 -74 1603 196 4 0 chr13 22429824 22430105 -97314793 - AluJo SINE Alu -30 282 1 267 216 13 150 chr13 22430105 22430204 -97314694 + MER94 DNA DNA 60 132 -2 243 288 45 0 chr13 22430305 22430371 -97314527 - MIR SINE MIR -70 192 124 191 324 15 0 chr13 22430557 22430625 -97314273 + MER5A DNA MER1_type 7 75 -114 * 262 275 266 9 chr13 22430569 22430678 -97314220 - MER5A DNA MER1_type -4 185 49 660 83 0 0 chr13 22430678 22430762 -97314136 + AluSg/x SINE Alu 211 294 -16 1083 173 15 10 chr13 22431808 22432010 -97312888 - MER2 DNA MER2_type -135 210 8 269 220 110 9 chr13 22433232 22433341 -97311557 + MER103 DNA DNA 2 121 -45 2281 117 0 3 chr13 22433618 22433925 -97310973 - AluSx SINE Alu -6 306 1 21 0 0 0 chr13 22433932 22433953 -97310945 + AT_rich Low_complexity Low_complexity 1 21 0 266 262 36 12 chr13 22434000 22434084 -97310814 - MER46C DNA MER2_type -1 337 252 743 201 109 41 chr13 22434091 22434516 -97310382 - LTR54B LTR ERV1 -8 490 2 538 230 59 54 chr13 22434554 22434776 -97310122 - MER46C DNA MER2_type -113 225 3 2064 136 27 54 chr13 22434828 22435183 -97309715 + MER57A LTR ERV1 8 371 -32 258 32 0 0 chr13 22435183 22435214 -97309684 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1916 125 0 30 chr13 22435221 22435517 -97309381 - AluSx SINE Alu -25 287 1 2064 136 27 54 chr13 22435517 22435559 -97309339 + MER57A LTR ERV1 377 402 -1 22 0 0 0 chr13 22435735 22435757 -97309141 + AT_rich Low_complexity Low_complexity 1 22 0 641 203 165 21 chr13 22436056 22436293 -97308605 - MER31A LTR ERV1 0 485 215 195 42 0 0 chr13 22436418 22436442 -97308456 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 734 275 143 13 chr13 22436510 22436895 -97308003 + L1MCc LINE L1 26 460 -5963 963 289 61 42 chr13 22437067 22437656 -97307242 + L1MCc LINE L1 1477 2076 -4865 21 36 0 0 chr13 22438014 22438042 -97306856 + AT_rich Low_complexity Low_complexity 1 28 0 956 149 51 17 chr13 22438045 22438220 -97306678 + AluSx SINE Alu 3 183 -129 1123 149 44 6 chr13 22438320 22438501 -97306397 + AluSg/x SINE Alu 111 298 -14 484 241 71 71 chr13 22438713 22438942 -97305956 - MIR SINE MIR 0 262 25 2436 61 0 17 chr13 22439258 22439555 -97305343 + AluY SINE Alu 1 292 -19 453 169 0 0 chr13 22439984 22440055 -97304843 - MER2 DNA MER2_type 0 345 275 806 175 7 28 chr13 22440055 22440198 -97304700 + FRAM SINE Alu 1 140 -36 21 0 0 0 chr13 22440217 22440238 -97304660 + AT_rich Low_complexity Low_complexity 1 21 0 709 169 4 9 chr13 22440269 22440520 -97304378 - MER2 DNA MER2_type -61 284 1 543 189 0 19 chr13 22441008 22441114 -97303784 - L1MD2 LINE L1 -13 6346 6243 938 187 20 5 chr13 22441140 22441343 -97303555 - MER72 LTR ERV1 -516 206 1 299 285 138 79 chr13 22441414 22441783 -97303115 + L2 LINE L2 2882 3272 0 1017 215 94 97 chr13 22441785 22442533 -97302365 - LTR8A LTR ERV1 0 727 1 21 36 0 0 chr13 22443745 22443773 -97301125 + AT_rich Low_complexity Low_complexity 1 28 0 251 252 26 126 chr13 22444095 22444176 -97300722 - MIR SINE MIR -45 217 156 2334 96 3 0 chr13 22444176 22444468 -97300430 + AluSg SINE Alu 1 293 -17 251 252 26 126 chr13 22444468 22444537 -97300361 - MIR SINE MIR -106 156 82 2502 56 0 3 chr13 22445420 22445723 -97299175 + AluY SINE Alu 1 302 -9 21 36 0 0 chr13 22445743 22445771 -97299127 + AT_rich Low_complexity Low_complexity 1 28 0 441 0 0 0 chr13 22447053 22447102 -97297796 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 2304 67 27 3 chr13 22447126 22447423 -97297475 - AluY SINE Alu -7 304 1 219 284 0 15 chr13 22448222 22448293 -97296605 - MIR SINE MIR -6 256 187 264 308 101 40 chr13 22448331 22448529 -97296369 - MIR SINE MIR -12 250 41 879 296 23 40 chr13 22448633 22448937 -97295961 - MLT1K LTR MaLR -2 586 288 488 278 106 39 chr13 22450075 22450406 -97294492 + L1ME4a LINE L1 4706 5058 -1088 2048 113 7 23 chr13 22450406 22450737 -97294161 - AluSx SINE Alu 0 312 1 2421 145 6 6 chr13 22450782 22451147 -97293751 - MER47A DNA MER2_type 0 366 2 1972 134 25 0 chr13 22451249 22451526 -97293372 - AluSx SINE Alu -28 284 1 1057 227 95 122 chr13 22451554 22452180 -97292718 + L1ME4a LINE L1 5334 5965 -205 399 284 0 0 chr13 22452900 22452995 -97291903 + MER103 DNA DNA 20 114 -52 2398 72 3 0 chr13 22454193 22454497 -97290401 + AluY SINE Alu 1 305 -6 2153 111 9 29 chr13 22454511 22454827 -97290071 + AluSx SINE Alu 3 312 0 2617 155 29 9 chr13 22454870 22455289 -97289609 - MSTA LTR MaLR 0 428 2 428 242 30 20 chr13 22455735 22455834 -97289064 - L2 LINE L2 -20 3293 3194 184 311 87 55 chr13 22456283 22456572 -97288326 - L2 LINE L2 -821 2493 2196 2017 138 7 0 chr13 22457379 22457683 -97287215 - AluSx SINE Alu -6 306 1 197 178 22 0 chr13 22457725 22457770 -97287128 + (TA)n Simple_repeat Simple_repeat 2 47 0 1256 206 4 24 chr13 22457827 22458075 -97286823 - AluJb SINE Alu -32 280 38 23 0 0 0 chr13 22459460 22459483 -97285415 + AT_rich Low_complexity Low_complexity 1 23 0 345 308 45 32 chr13 22459785 22459941 -97284957 + L2 LINE L2 2674 2831 -483 289 262 83 48 chr13 22460121 22460266 -97284632 + L2 LINE L2 3154 3303 -10 2000 246 135 20 chr13 22460280 22461012 -97283886 - L1ME3 LINE L1 -2 6160 5345 5409 247 113 38 chr13 22461054 22461162 -97283736 - L2 LINE L2 -808 2506 2408 1441 153 145 0 chr13 22461162 22461417 -97283481 + AluJo SINE Alu 1 292 -20 5409 247 113 38 chr13 22461417 22462969 -97281929 - L2 LINE L2 -906 2408 646 1836 206 100 30 chr13 22462969 22463440 -97281458 - MLT1D LTR MaLR -1 504 1 5409 247 113 38 chr13 22463440 22463923 -97280975 - L2 LINE L2 -2668 646 201 1355 142 15 0 chr13 22464712 22464909 -97279989 + AluJo SINE Alu 1 200 -112 853 298 83 24 chr13 22465147 22465520 -97279378 + MLT1I LTR MaLR 1 395 -14 274 237 75 11 chr13 22465681 22465774 -97279124 + L1ME4a LINE L1 6023 6121 0 460 160 21 11 chr13 22466253 22466347 -97278551 + MLT1A1 LTR MaLR 58 152 -213 287 25 25 0 chr13 22466374 22466414 -97278484 + (TC)n Simple_repeat Simple_repeat 1 41 0 983 175 49 24 chr13 22466414 22466636 -97278262 + MLT1A1 LTR MaLR 162 363 -2 1650 177 0 30 chr13 22467575 22467874 -97277024 - AluJb SINE Alu -13 299 10 43407 55 4 6 chr13 22468182 22474350 -97270548 - L1PA5 LINE L1 0 6154 1 281 255 75 50 chr13 22474531 22474692 -97270206 - L1M4 LINE L1 -1901 4245 4081 319 267 158 17 chr13 22474974 22475094 -97269804 + MIR SINE MIR 126 262 0 22 0 0 0 chr13 22475477 22475499 -97269399 + AT_rich Low_complexity Low_complexity 1 22 0 437 195 207 12 chr13 22476182 22476334 -97268564 - L1MD3 LINE L1 0 7995 7645 546 204 55 149 chr13 22476794 22477069 -97267829 + MER112 DNA MER1_type 1 249 -11 204 67 0 0 chr13 22478082 22478112 -97266786 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 5142 182 70 24 chr13 22478419 22478666 -97266232 + L1MB7 LINE L1 3999 4233 -1951 423 0 0 0 chr13 22478666 22478713 -97266185 + (CA)n Simple_repeat Simple_repeat 2 48 0 5142 182 70 24 chr13 22478713 22478724 -97266174 + L1MB7 LINE L1 4233 4242 -1942 2241 121 0 13 chr13 22478724 22479038 -97265860 + AluSq SINE Alu 1 310 -3 5142 182 70 24 chr13 22479038 22480846 -97264052 + L1MB7 LINE L1 4242 6165 -19 539 138 0 0 chr13 22480854 22480941 -97263957 + L1MB8 LINE L1 6077 6163 -15 351 0 0 0 chr13 22482252 22482291 -97262607 + (TG)n Simple_repeat Simple_repeat 2 40 0 494 271 98 33 chr13 22483408 22483622 -97261276 - L2 LINE L2 -259 3054 2827 1659 156 35 38 chr13 22483689 22484059 -97260839 - MSTC LTR MaLR -2 426 18 1575 158 12 71 chr13 22485066 22485388 -97259510 - AluJb SINE Alu -9 303 1 567 236 102 77 chr13 22485665 22485978 -97258920 - MLT1J LTR MaLR -188 323 3 28 29 0 0 chr13 22486030 22486065 -97258833 + AT_rich Low_complexity Low_complexity 1 35 0 2442 78 0 7 chr13 22486070 22486366 -97258532 + AluSg SINE Alu 1 294 -16 1789 234 84 44 chr13 22486499 22487068 -97257830 - MLT1E LTR MaLR -1 592 1 195 69 0 0 chr13 22487223 22487252 -97257646 + (GA)n Simple_repeat Simple_repeat 1 29 0 1500 175 93 10 chr13 22488254 22488545 -97256353 - MER44D DNA MER2_type -5 604 20 829 212 0 50 chr13 22488587 22488766 -97256132 + MER8 DNA MER2_type 8 177 -62 384 187 121 22 chr13 22488768 22488859 -97256039 - Tigger2 DNA MER2_type -2618 100 1 1397 202 24 14 chr13 22488965 22489252 -97255646 + AluJo SINE Alu 1 290 -22 2161 131 0 6 chr13 22491665 22491978 -97252920 - AluSx SINE Alu -1 311 1 22 0 0 0 chr13 22492896 22492918 -97251980 + AT_rich Low_complexity Low_complexity 1 22 0 1538 206 99 0 chr13 22493079 22493434 -97251464 - MLT1B LTR MaLR 0 390 1 292 319 83 35 chr13 22494873 22495017 -97249881 - MIR3 SINE MIR -57 151 1 3083 109 78 52 chr13 22496394 22496909 -97247989 + MER1A DNA MER1_type 1 528 -1 2272 109 3 6 chr13 22497366 22497678 -97247220 + AluSq SINE Alu 1 311 -2 187 176 0 0 chr13 22498445 22498479 -97246419 - L2 LINE L2 0 3313 3280 457 303 0 16 chr13 22498485 22498607 -97246291 - L2 LINE L2 0 3313 3194 356 300 121 14 chr13 22498684 22498907 -97245991 - MIR SINE MIR -15 247 1 200 306 14 56 chr13 22500450 22500522 -97244376 + MIR SINE MIR 49 117 -145 2145 112 14 0 chr13 22500581 22500876 -97244022 - AluSx SINE Alu -13 299 1 4553 183 87 13 chr13 22502722 22503742 -97241156 + L1MC3 LINE L1 6690 7785 0 304 271 22 66 chr13 22503866 22504047 -97240851 - L2 LINE L2 -438 2876 2704 294 337 0 12 chr13 22504268 22504351 -97240547 - L3 LINE CR1 -109 1468 1387 631 209 32 73 chr13 22505329 22505549 -97239349 + L2 LINE L2 3103 3313 0 1041 150 0 24 chr13 22505611 22505778 -97239120 + AluSg/x SINE Alu 132 294 -16 2117 127 0 0 chr13 22505780 22506080 -97238818 + AluSg SINE Alu 1 300 -10 2303 110 0 7 chr13 22507157 22507467 -97237431 - AluSx SINE Alu -4 308 1 2421 145 6 6 chr13 22507512 22507877 -97237021 - MER47A DNA MER2_type 0 366 2 1972 134 25 0 chr13 22507979 22508256 -97236642 - AluSx SINE Alu -28 284 1 1057 227 95 122 chr13 22508284 22508910 -97235988 + L1ME3A LINE L1 5334 5965 -205 399 284 0 0 chr13 22509630 22509725 -97235173 + MER103 DNA DNA 20 114 -52 2398 72 3 0 chr13 22510923 22511227 -97233671 + AluY SINE Alu 1 305 -6 2153 111 9 29 chr13 22511241 22511557 -97233341 + AluSx SINE Alu 3 312 0 2617 155 29 9 chr13 22511600 22512019 -97232879 - MSTA LTR MaLR 0 428 2 428 242 30 20 chr13 22512465 22512564 -97232334 - L2 LINE L2 -20 3293 3194 184 311 87 55 chr13 22513013 22513302 -97231596 - L2 LINE L2 -821 2493 2196 2017 138 7 0 chr13 22514108 22514412 -97230486 - AluSx SINE Alu -6 306 1 197 178 22 0 chr13 22514454 22514499 -97230399 + (TA)n Simple_repeat Simple_repeat 2 47 0 1256 206 4 24 chr13 22514556 22514804 -97230094 - AluJb SINE Alu -32 280 38 23 0 0 0 chr13 22516189 22516212 -97228686 + AT_rich Low_complexity Low_complexity 1 23 0 345 308 45 32 chr13 22516514 22516670 -97228228 + L2 LINE L2 2674 2831 -483 289 262 83 48 chr13 22516850 22516995 -97227903 + L2 LINE L2 3154 3303 -10 2000 246 135 20 chr13 22517009 22517741 -97227157 - L1ME3 LINE L1 -2 6160 5345 3116 230 109 52 chr13 22517783 22517891 -97227007 - L2 LINE L2 -808 2506 2406 1441 153 145 0 chr13 22517891 22518146 -97226752 + AluJo SINE Alu 1 292 -20 3116 230 109 52 chr13 22518146 22519298 -97225600 - L2 LINE L2 -908 2406 1175 1063 224 8 4 chr13 22519961 22520206 -97224692 + AluSq SINE Alu 54 299 -14 1913 134 0 7 chr13 22520272 22520576 -97224322 - AluSx SINE Alu 0 302 1 246 289 46 30 chr13 22521585 22521747 -97223151 - MIR SINE MIR -10 252 36 674 159 0 66 chr13 22523232 22523383 -97221515 - L1MB4 LINE L1 -1 6179 6039 5151 111 9 5 chr13 22524385 22525123 -97219775 - L1PA13 LINE L1 0 6163 5423 242 232 29 0 chr13 22525713 22525782 -97219116 - LTR67 LTR ERVL -3 554 484 275 157 131 16 chr13 22526024 22526185 -97218713 - MER20 DNA MER1_type 0 219 1 217 250 94 122 chr13 22526248 22526428 -97218470 + L2 LINE L2 3096 3270 -2 648 260 68 17 chr13 22527262 22527439 -97217459 - MER5A DNA MER1_type -3 186 1 1717 175 7 13 chr13 22527465 22527768 -97217130 + AluJb SINE Alu 1 301 -11 22 0 0 0 chr13 22527773 22527795 -97217103 + AT_rich Low_complexity Low_complexity 1 22 0 1491 111 79 14 chr13 22527795 22528011 -97216887 + MER30 DNA MER1_type 1 230 0 386 273 284 10 chr13 22529245 22529439 -97215459 + MIR SINE MIR 2 248 -14 3413 119 35 16 chr13 22530851 22531398 -97213500 - LTR9B LTR ERV1 -87 557 1 1253 142 10 0 chr13 22531398 22531595 -97213303 - HUERS-P3 LTR ERV1 -1 8918 8720 457 102 0 0 chr13 22531593 22531652 -97213246 - HUERS-P3b LTR ERV1 -1274 6144 6086 * 1038 47 16 0 chr13 22531650 22531777 -97213121 - HUERS-P3b LTR ERV1 -2131 3086 2958 1128 124 75 0 chr13 22531819 22532005 -97212893 - LTR9B LTR ERV1 0 644 445 3367 208 72 45 chr13 22533288 22533932 -97210966 - L1ME2 LINE L1 -9 6155 5446 1925 140 3 38 chr13 22533932 22534246 -97210652 + AluJb SINE Alu 7 309 -3 3367 208 72 45 chr13 22534246 22534792 -97210106 - L1ME2 LINE L1 -718 5446 4916 278 255 255 13 chr13 22535127 22535280 -97209618 - MIR SINE MIR -14 248 59 2090 141 0 0 chr13 22537532 22537822 -97207076 - AluSx SINE Alu -22 290 1 739 125 0 0 chr13 22537882 22538005 -97206893 - AluSg/x SINE Alu 0 311 189 1736 83 5 0 chr13 22538006 22538224 -97206674 - AluSq SINE Alu -94 219 1 531 152 9 38 chr13 22538711 22538816 -97206082 + L1MB3 LINE L1 6075 6176 -7 476 324 143 5 chr13 22540429 22540639 -97204259 - L3 LINE CR1 -938 639 401 261 343 135 6 chr13 22541209 22541387 -97203511 + L2 LINE L2 2252 2452 -862 1982 183 127 44 chr13 22541712 22542192 -97202706 + MLT2B1 LTR ERVL 1 520 0 193 327 84 28 chr13 22543993 22544100 -97200798 - L2 LINE L2 -14 3258 3146 869 194 62 44 chr13 22544324 22544551 -97200347 + L1MC1 LINE L1 6078 6308 -25 1438 111 136 76 chr13 22544717 22544869 -97200029 + THE1C LTR MaLR 1 142 -233 1943 157 0 3 chr13 22544869 22545163 -97199735 + AluSx SINE Alu 1 293 -19 1438 111 136 76 chr13 22545163 22545326 -97199572 + THE1C LTR MaLR 142 335 -40 1950 78 67 11 chr13 22545326 22545615 -97199283 + AluY SINE Alu 1 304 0 232 211 0 35 chr13 22545615 22545672 -97199226 + THE1C LTR MaLR 374 428 0 363 191 143 38 chr13 22546107 22546212 -97198686 - L1MC1 LINE L1 -126 6207 6092 1186 220 59 54 chr13 22546304 22546695 -97198203 + MLT2C2 LTR ERVL 1 393 -71 917 177 29 34 chr13 22546695 22546870 -97198028 - FAM SINE Alu -11 174 1 243 343 56 9 chr13 22546885 22546993 -97197905 + L2 LINE L2 3117 3229 -43 823 256 81 42 chr13 22548254 22548613 -97196285 - L1ME LINE L1 -329 5792 5420 233 219 256 0 chr13 22548819 22548901 -97195997 + MIR SINE MIR 72 174 -88 440 231 71 106 chr13 22550301 22550882 -97194016 - HSREP522 Satellite telomeric 0 560 1 219 253 23 23 chr13 22551667 22551754 -97193144 + GA-rich Low_complexity Low_complexity 5 91 0 1626 224 26 5 chr13 22552571 22553000 -97191898 - L1 LINE L1 -810 5336 4899 252 0 0 0 chr13 22553727 22553755 -97191143 + (ATG)n Simple_repeat Simple_repeat 1 28 0 231 326 34 11 chr13 22554268 22554357 -97190541 + A-rich Low_complexity Low_complexity 4 94 0 210 484 11 11 chr13 22554625 22554716 -97190182 + A-rich Low_complexity Low_complexity 2 92 0 254 447 0 41 chr13 22554820 22554943 -97189955 + (TAAA)n Simple_repeat Simple_repeat 2 119 0 195 304 29 0 chr13 22555014 22555083 -97189815 + A-rich Low_complexity Low_complexity 2 72 0 21 36 0 0 chr13 22555086 22555114 -97189784 + AT_rich Low_complexity Low_complexity 1 28 0 219 157 98 20 chr13 22555152 22555203 -97189695 + (ATGTG)n Simple_repeat Simple_repeat 4 58 0 322 363 74 99 chr13 22555246 22555781 -97189117 + HAL1 LINE L1 881 1302 -1205 302 276 0 17 chr13 22555816 22555874 -97189024 + polypurine Low_complexity Low_complexity 20 76 0 304 311 19 19 chr13 22555951 22556057 -97188841 + L1M4 LINE L1 3076 3181 -2965 273 274 0 0 chr13 22556073 22556157 -97188741 + A-rich Low_complexity Low_complexity 1 84 0 191 263 26 0 chr13 22556301 22556339 -97188559 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 251 154 0 19 chr13 22556342 22556394 -97188504 + G-rich Low_complexity Low_complexity 5 55 0 * 663 95 0 0 chr13 22556393 22556488 -97188410 + (A)n Simple_repeat Simple_repeat 1 95 0 420 55 0 0 chr13 22556488 22556543 -97188355 + (G)n Simple_repeat Simple_repeat 1 55 0 272 135 0 0 chr13 22556550 22556602 -97188296 + (A)n Simple_repeat Simple_repeat 1 52 0 358 284 0 11 chr13 22556614 22556702 -97188196 + GA-rich Low_complexity Low_complexity 2 88 0 * 978 48 0 0 chr13 22556701 22556777 -97188121 + (A)n Simple_repeat Simple_repeat 1 79 -47 504 0 0 0 chr13 22556777 22556833 -97188065 + (G)n Simple_repeat Simple_repeat 1 56 0 978 48 0 0 chr13 22556833 22556882 -97188016 + (A)n Simple_repeat Simple_repeat 78 126 0 380 308 44 0 chr13 22556882 22556914 -97187984 + L1MCa LINE L1 2226 2255 -4171 501 17 0 0 chr13 22556914 22556972 -97187926 + (G)n Simple_repeat Simple_repeat 1 58 0 380 308 44 0 chr13 22556972 22557047 -97187851 + L1MCa LINE L1 2255 2325 -4101 447 19 0 0 chr13 22557047 22557099 -97187799 + (G)n Simple_repeat Simple_repeat 1 52 0 380 308 44 0 chr13 22557099 22557155 -97187743 + L1MCa LINE L1 2325 3479 -2947 261 98 0 0 chr13 22557175 22557216 -97187682 + (G)n Simple_repeat Simple_repeat 1 41 0 786 11 0 0 chr13 22557216 22557307 -97187591 + (A)n Simple_repeat Simple_repeat 1 91 0 279 0 0 0 chr13 22557308 22557339 -97187559 + (C)n Simple_repeat Simple_repeat 1 31 0 31 196 0 0 chr13 22557804 22557896 -97187002 + GC_rich Low_complexity Low_complexity 1 92 0 216 194 75 0 chr13 22558366 22558433 -97186465 + A-rich Low_complexity Low_complexity 2 73 0 349 455 67 51 chr13 22558438 22558947 -97185951 + L1MDa LINE L1 1106 3796 -2744 518 148 0 0 chr13 22559092 22559180 -97185718 + (A)n Simple_repeat Simple_repeat 1 88 0 188 349 0 0 chr13 22559198 22559304 -97185594 + A-rich Low_complexity Low_complexity 1 106 0 208 434 12 36 chr13 22559380 22559463 -97185435 + (CGAA)n Simple_repeat Simple_repeat 3 83 0 237 211 0 0 chr13 22559464 22559516 -97185382 + G-rich Low_complexity Low_complexity 1 52 0 326 333 39 39 chr13 22559516 22559618 -97185280 + L1M4 LINE L1 3081 3182 -2964 300 212 0 0 chr13 22559619 22559685 -97185213 + G-rich Low_complexity Low_complexity 2 67 0 * 350 312 0 0 chr13 22559684 22559761 -97185137 + A-rich Low_complexity Low_complexity 1 77 0 * 550 89 25 0 chr13 22559748 22559827 -97185071 + (GA)n Simple_repeat Simple_repeat 2 82 0 398 351 94 6 chr13 22559830 22559902 -97184996 + L1M4 LINE L1 875 939 -3678 474 18 0 0 chr13 22559902 22559957 -97184941 + (G)n Simple_repeat Simple_repeat 1 55 0 398 351 94 6 chr13 22559957 22560037 -97184861 + L1M4 LINE L1 939 1011 -3606 534 16 0 0 chr13 22560037 22560100 -97184798 + (G)n Simple_repeat Simple_repeat 1 63 0 398 351 94 6 chr13 22560100 22560172 -97184726 + L1M4 LINE L1 1011 1075 -3542 498 33 0 0 chr13 22560172 22560232 -97184666 + (G)n Simple_repeat Simple_repeat 1 60 0 398 351 94 6 chr13 22560232 22560300 -97184598 + L1M4 LINE L1 1075 3305 -1312 381 43 0 0 chr13 22560300 22560347 -97184551 + (G)n Simple_repeat Simple_repeat 1 47 0 1759 148 20 3 chr13 22561107 22561411 -97183487 + AluSc SINE Alu 1 309 0 525 86 0 14 chr13 22561468 22561538 -97183360 - AluJ/FLAM SINE Alu -236 76 8 228 328 0 0 chr13 22561688 22561755 -97183143 - tRNA-Glu-GAG tRNA tRNA -3 72 6 666 0 0 0 chr13 22562224 22562297 -97182601 - tRNA-Lys-AAG tRNA tRNA -3 73 1 669 14 0 0 chr13 22562639 22562713 -97182185 - tRNA-Val-GTG tRNA tRNA -2 74 1 21 0 0 0 chr13 22563066 22563087 -97181811 + AT_rich Low_complexity Low_complexity 1 21 0 596 368 112 22 chr13 22563463 22563955 -97180943 + L2 LINE L2 1864 2399 -915 332 360 134 7 chr13 22564993 22565276 -97179622 + L2 LINE L2 2950 3268 -4 707 167 92 0 chr13 22565329 22565449 -97179449 + FLAM_C SINE Alu 2 132 -11 21 36 0 0 chr13 22565449 22565477 -97179421 + AT_rich Low_complexity Low_complexity 1 28 0 208 128 51 0 chr13 22565635 22565674 -97179224 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1724 152 3 20 chr13 22566587 22566883 -97178015 - AluSx SINE Alu -21 291 1 207 0 0 0 chr13 22566883 22566906 -97177992 + (T)n Simple_repeat Simple_repeat 1 23 0 1627 126 4 24 chr13 22567013 22567268 -97177630 - AluSq SINE Alu -9 304 55 24 32 0 0 chr13 22567645 22567676 -97177222 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 22568690 22568712 -97176186 + AT_rich Low_complexity Low_complexity 1 22 0 1404 123 88 4 chr13 22568787 22569047 -97175851 - L1MA5 LINE L1 -2 6298 6017 528 220 171 23 chr13 22569124 22569388 -97175510 - L1MC5 LINE L1 -50 7911 7609 323 345 12 25 chr13 22569718 22569968 -97174930 + HERVL LTR ERVL 1516 1800 -3964 362 287 71 96 chr13 22570189 22570683 -97174215 + HERVL LTR ERVL 3851 4395 -1090 479 295 129 16 chr13 22571168 22571576 -97173322 + L2 LINE L2 2581 3044 -269 450 219 24 41 chr13 22572453 22572576 -97172322 + LTR67 LTR ERVL 429 549 -8 1788 164 88 8 chr13 22572775 22573128 -97171770 + MLT1C LTR MaLR 2 382 -85 1845 141 34 0 chr13 22576105 22576396 -97168502 + AluSx SINE Alu 1 301 -11 283 230 142 35 chr13 22576621 22576734 -97168164 + MIR3 SINE MIR 3 127 -81 208 212 71 71 chr13 22576832 22576931 -97167967 + MIR SINE MIR 18 116 -92 1996 116 7 13 chr13 22577495 22577798 -97167100 + AluSx SINE Alu 3 303 -9 505 208 10 10 chr13 22577830 22577931 -97166967 - MIR3 SINE MIR -39 169 69 1966 119 3 17 chr13 22578404 22578699 -97166199 - AluSg SINE Alu -19 291 1 333 136 40 160 chr13 22578762 22578887 -97166011 + MER34 LTR ERV1 433 542 0 1731 154 16 16 chr13 22579387 22579698 -97165200 + AluJb SINE Alu 1 311 -1 1449 182 37 14 chr13 22580404 22580701 -97164197 - AluJb SINE Alu -8 304 1 1547 228 47 17 chr13 22580960 22581363 -97163535 + MLT1C LTR MaLR 53 467 0 564 320 56 9 chr13 22581560 22581791 -97163107 - MIR SINE MIR 0 262 21 309 226 60 12 chr13 22581930 22582014 -97162884 - Charlie4 DNA MER1_type -33 1928 1841 1802 169 10 3 chr13 22583201 22583509 -97161389 - AluJo SINE Alu -2 310 1 696 148 9 0 chr13 22585005 22585113 -97159785 - AluJb SINE Alu -15 297 189 956 147 0 0 chr13 22585113 22585256 -97159642 - AluSq/x SINE Alu -169 143 1 1899 157 0 0 chr13 22585559 22585865 -97159033 - AluJb SINE Alu -4 308 3 2055 108 0 62 chr13 22586823 22587148 -97157750 + AluSx SINE Alu 1 305 -7 272 219 31 0 chr13 22587265 22587393 -97157505 + (TA)n Simple_repeat Simple_repeat 2 133 0 305 145 81 16 chr13 22587397 22587459 -97157439 + L1MCa LINE L1 1998 2063 -4363 653 203 0 17 chr13 22587506 22587624 -97157274 - FLAM_A SINE Alu -14 119 4 4563 153 38 27 chr13 22587628 22587924 -97156974 - L1MB3 LINE L1 -40 6143 5852 1781 130 3 25 chr13 22587924 22588233 -97156665 - AluSg SINE Alu 0 303 1 4563 153 38 27 chr13 22588233 22588695 -97156203 - L1MB3 LINE L1 -331 5852 5371 1844 79 0 20 chr13 22588695 22588947 -97155951 - AluSx SINE Alu -14 298 52 4563 153 38 27 chr13 22588947 22589032 -97155866 - L1MB3 LINE L1 -812 5371 5288 188 274 226 19 chr13 22589046 22589152 -97155746 - MIR SINE MIR -71 191 64 321 322 94 0 chr13 22589208 22589346 -97155552 + MIR SINE MIR 43 190 -67 1651 183 10 0 chr13 22589535 22589824 -97155074 - AluJo SINE Alu -15 297 6 308 331 16 39 chr13 22589972 22590099 -97154799 - MER5A DNA MER1_type 0 189 66 443 291 151 17 chr13 22590245 22590424 -97154474 - MIR SINE MIR -16 246 44 288 0 0 0 chr13 22591377 22591409 -97153489 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr13 22592052 22592075 -97152823 + AT_rich Low_complexity Low_complexity 1 23 0 733 207 152 21 chr13 22592197 22592448 -97152450 + L1MB7 LINE L1 4906 5201 -945 1775 161 0 22 chr13 22592448 22592759 -97152139 + AluJb SINE Alu 1 304 -8 733 207 152 21 chr13 22592759 22592797 -97152101 + L1MB7 LINE L1 5201 5233 -913 2069 197 100 24 chr13 22592803 22593271 -97151627 + MLT2B2 LTR ERVL 9 512 -3 3906 203 31 13 chr13 22593271 22594153 -97150745 + L1MB7 LINE L1 5236 6132 -52 355 285 59 31 chr13 22594190 22594362 -97150536 + L1ME3 LINE L1 5995 6152 -10 184 307 72 42 chr13 22594416 22594582 -97150316 + L2 LINE L2 2745 2915 -399 437 312 145 0 chr13 22594604 22594790 -97150108 - MIR SINE MIR -30 232 20 23 0 0 0 chr13 22596458 22596481 -97148417 + AT_rich Low_complexity Low_complexity 1 23 0 2309 78 0 7 chr13 22596880 22597186 -97147712 + AluY SINE Alu 1 304 -7 997 143 6 24 chr13 22597218 22597386 -97147512 + AluSc SINE Alu 127 291 -18 1808 166 10 0 chr13 22597425 22597720 -97147178 + AluSx SINE Alu 1 298 -14 21 57 0 0 chr13 22597988 22598023 -97146875 + AT_rich Low_complexity Low_complexity 1 35 0 3063 192 23 158 chr13 22598978 22600267 -97144631 + MER52A LTR ERV1 641 1755 0 231 253 168 32 chr13 22600373 22600468 -97144430 + L2 LINE L2 3201 3308 -5 2274 114 0 13 chr13 22603182 22603488 -97141410 + AluSx SINE Alu 1 302 -10 258 316 53 18 chr13 22603945 22604116 -97140782 - MIR SINE MIR -7 255 79 356 294 28 0 chr13 22605304 22605413 -97139485 + MER81 DNA DNA 3 114 0 221 56 0 28 chr13 22606315 22606351 -97138547 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1311 118 68 27 chr13 22606467 22606688 -97138210 + MER30 DNA MER1_type 1 230 0 609 266 234 13 chr13 22607285 22607679 -97137219 + LTR33A LTR ERVL 5 485 -38 378 165 106 0 chr13 22607880 22607965 -97136933 - MER20 DNA MER1_type -31 188 95 550 239 9 0 chr13 22608062 22608171 -97136727 - FLAM_A SINE Alu -21 121 12 1984 163 3 6 chr13 22608213 22608526 -97136372 - AluSx SINE Alu 0 312 1 2183 133 0 0 chr13 22611729 22612031 -97132867 + AluSg SINE Alu 1 302 -8 859 137 6 99 chr13 22612980 22613162 -97131736 - FRAM SINE Alu -1 165 1 182 309 56 40 chr13 22613208 22613334 -97131564 - L2 LINE L2 0 3272 3145 7317 163 28 27 chr13 22613757 22615794 -97129104 + L1MA8 LINE L1 3868 5923 -368 565 165 18 9 chr13 22616558 22616667 -97128231 + MER119 DNA MER1_type 474 583 0 347 244 142 16 chr13 22617357 22617484 -97127414 - MIR SINE MIR -107 155 13 1319 185 23 15 chr13 22617643 22617898 -97127000 + L1MB3 LINE L1 5428 5685 -494 7730 152 25 3 chr13 22617898 22618387 -97126511 - L1PA11 LINE L1 -3 6171 5694 2319 108 7 0 chr13 22618387 22618684 -97126214 - AluSq SINE Alu -14 299 1 7730 152 25 3 chr13 22618684 22620355 -97124543 - L1MB3 LINE L1 -480 5694 3989 2669 182 2 17 chr13 22620363 22620880 -97124018 + L1MB3 LINE L1 5675 6183 0 193 322 91 58 chr13 22621005 22621126 -97123772 + MIR SINE MIR 118 242 -20 257 342 53 0 chr13 22621325 22621439 -97123459 + L2 LINE L2 3185 3304 -9 1538 79 19 0 chr13 22622114 22622329 -97122569 + L1PA11 LINE L1 5956 6174 0 219 139 0 0 chr13 22622750 22622786 -97122112 + (A)n Simple_repeat Simple_repeat 1 36 0 236 94 0 0 chr13 22623178 22623254 -97121644 - Alu SINE Alu 0 323 248 2238 157 107 25 chr13 22623254 22623554 -97121344 + L1MC2 LINE L1 5820 6177 -167 2217 122 0 0 chr13 22623554 22623841 -97121057 + AluSc SINE Alu 1 287 -22 2238 157 107 25 chr13 22623841 22624025 -97120873 + L1MC2 LINE L1 6177 6344 0 324 0 0 0 chr13 22624225 22624261 -97120637 + (TG)n Simple_repeat Simple_repeat 1 36 0 249 286 71 52 chr13 22625021 22625231 -97119667 + MIR SINE MIR 46 259 -3 255 289 72 0 chr13 22625285 22625368 -97119530 - MIR SINE MIR -167 95 7 366 323 161 53 chr13 22625485 22626105 -97118793 + L3 LINE CR1 888 1574 -3 1131 140 0 0 chr13 22626107 22626264 -97118634 + AluJb SINE Alu 4 160 -152 402 142 0 0 chr13 22626267 22626343 -97118555 + Alu SINE Alu 241 299 -3 2212 90 4 0 chr13 22627000 22627300 -97117598 + AluSg SINE Alu 1 301 0 953 221 143 52 chr13 22627529 22627950 -97116948 + LTR37B LTR ERV1 10 468 0 1527 160 0 16 chr13 22628542 22628792 -97116106 - AluJb SINE Alu -16 296 51 30 45 0 0 chr13 22629318 22629362 -97115536 + AT_rich Low_complexity Low_complexity 1 44 0 3454 160 39 20 chr13 22629686 22630350 -97114548 + L1MB7 LINE L1 5495 6171 -13 1846 129 126 55 chr13 22633022 22633430 -97111468 + MER61C LTR ERV1 7 434 0 2603 58 0 3 chr13 22633485 22633793 -97111105 + AluY SINE Alu 1 307 -4 1238 134 5 5 chr13 22633820 22634014 -97110884 - Tigger1 DNA MER2_type 0 2418 2225 734 183 7 22 chr13 22634016 22634153 -97110745 + AluJo SINE Alu 2 136 -176 4772 130 36 0 chr13 22634169 22634909 -97109989 - Tigger1 DNA MER2_type -182 2236 1470 29 0 0 0 chr13 22635315 22635344 -97109554 + AT_rich Low_complexity Low_complexity 1 29 0 640 227 0 7 chr13 22635345 22635486 -97109412 - FLAM_C SINE Alu -2 141 2 2274 108 3 0 chr13 22637574 22637870 -97107028 + AluSg SINE Alu 1 297 -13 1614 225 36 0 chr13 22638209 22638542 -97106356 - MER7A DNA MER2_type -1 345 3 343 282 85 54 chr13 22638721 22638980 -97105918 - L1M4 LINE L1 -2985 3161 2895 21 36 0 0 chr13 22639293 22639321 -97105577 + AT_rich Low_complexity Low_complexity 1 28 0 1690 208 73 32 chr13 22639446 22639517 -97105381 + L1ME3A LINE L1 5391 5458 -712 2456 190 48 18 chr13 22639517 22640022 -97104876 + MLT2B1 LTR ERVL 1 520 0 1690 208 73 32 chr13 22640022 22640154 -97104744 + L1ME3A LINE L1 5458 5583 -587 1496 206 94 133 chr13 22640154 22640911 -97103987 + LTR8A LTR ERV1 1 727 0 1690 208 73 32 chr13 22640911 22641239 -97103659 + L1ME3A LINE L1 5583 5945 -225 1073 180 46 14 chr13 22641239 22641456 -97103442 + AluJo SINE Alu 81 304 -8 610 241 116 15 chr13 22641456 22641655 -97103243 + L1ME3A LINE L1 5952 6170 0 371 254 84 14 chr13 22641755 22641897 -97103001 - MIR SINE MIR -32 230 79 1323 157 17 8 chr13 22642773 22643009 -97101889 - L1MA6 LINE L1 -231 6069 5832 1260 106 55 0 chr13 22643009 22643204 -97101694 + L1MA6 LINE L1 6091 6300 0 2267 117 0 0 chr13 22643213 22643522 -97101376 + AluSc SINE Alu 1 309 0 455 301 11 22 chr13 22644886 22645069 -97099829 + MER5A DNA MER1_type 3 183 -6 231 242 32 0 chr13 22647566 22647628 -97097270 + LTR67 LTR ERVL 4 67 -490 728 249 47 9 chr13 22648979 22649192 -97095706 + MER58A DNA MER1_type 1 221 -3 2461 65 0 7 chr13 22649531 22649825 -97095073 + AluY SINE Alu 1 292 -19 2142 113 0 7 chr13 22650036 22650341 -97094557 + AluSg SINE Alu 1 303 0 475 0 0 71 chr13 22650373 22650443 -97094455 - L1PA6 LINE L1 0 6154 6090 1295 152 110 132 chr13 22650567 22651029 -97093869 - L1MB2 LINE L1 -239 5932 5481 2120 118 0 0 chr13 22651072 22651354 -97093544 - AluSx SINE Alu -32 280 1 329 240 88 104 chr13 22652537 22652729 -97092169 + MER5A DNA MER1_type 1 189 0 972 109 0 8 chr13 22653016 22653144 -97091754 + FLAM_C SINE Alu 1 127 -16 341 280 171 21 chr13 22654118 22654311 -97090587 - MIR SINE MIR -25 237 16 557 60 0 12 chr13 22655930 22656013 -97088885 + (GA)n Simple_repeat Simple_repeat 2 83 0 243 228 120 0 chr13 22656748 22656840 -97088058 + L1ME4a LINE L1 6006 6108 -13 1514 195 14 34 chr13 22656984 22657119 -97087779 + AluJo SINE Alu 1 137 -175 1884 147 0 63 chr13 22657119 22657438 -97087460 + AluJo SINE Alu 3 301 -11 1514 195 14 34 chr13 22657438 22657594 -97087304 + AluJo SINE Alu 137 286 -26 411 56 0 0 chr13 22657594 22657648 -97087250 + (CATA)n Simple_repeat Simple_repeat 2 55 0 321 360 85 0 chr13 22657695 22657906 -97086992 + MIR SINE MIR 26 254 -8 2429 91 0 0 chr13 22658271 22658567 -97086331 - AluSx SINE Alu -16 296 1 260 319 42 7 chr13 22658789 22658933 -97085965 - MER103 DNA DNA -12 154 6 607 213 124 6 chr13 22658991 22659146 -97085752 + MER5A DNA MER1_type 4 183 -6 882 209 0 16 chr13 22660079 22660261 -97084637 + AluJb SINE Alu 130 308 -4 1817 166 3 0 chr13 22660467 22660756 -97084142 + AluJo SINE Alu 7 296 -16 560 68 0 0 chr13 22661913 22661987 -97082911 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 226 198 185 25 chr13 22662089 22662170 -97082728 + MIR SINE MIR 83 176 -86 865 159 8 0 chr13 22662279 22662411 -97082487 + FLAM_C SINE Alu 1 133 0 517 275 8 8 chr13 22662437 22662568 -97082330 - MIR SINE MIR -14 248 118 318 254 0 0 chr13 22663107 22663174 -97081724 + L2 LINE L2 3201 3267 -5 382 278 26 17 chr13 22663181 22663296 -97081602 - MIR SINE MIR -69 139 24 2697 49 0 0 chr13 22663388 22663694 -97081204 - AluY SINE Alu -5 306 1 23 33 0 0 chr13 22664172 22664202 -97080696 + AT_rich Low_complexity Low_complexity 1 30 0 792 178 79 35 chr13 22664220 22664422 -97080476 - L1MB2 LINE L1 -36 6135 5925 233 95 0 24 chr13 22664522 22664564 -97080334 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 470 255 226 41 chr13 22664567 22665195 -97079703 - L2 LINE L2 -50 3263 2479 * 519 263 11 68 chr13 22665179 22665369 -97079529 - MIR3 SINE MIR -11 197 19 1033 183 6 0 chr13 22665546 22665721 -97079177 - FRAM SINE Alu -2 174 1 228 398 17 0 chr13 22668350 22668468 -97076430 - MIR SINE MIR -123 139 20 226 94 0 0 chr13 22668905 22668937 -97075961 + U2 snRNA snRNA 1 32 -156 1867 130 0 11 chr13 22669958 22670228 -97074670 + AluSx SINE Alu 35 301 -11 259 316 140 35 chr13 22670374 22670545 -97074353 - MIR SINE MIR -65 197 9 198 128 0 0 chr13 22671038 22671077 -97073821 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 1019 124 7 0 chr13 22671088 22671225 -97073673 - AluSq SINE Alu -39 274 137 2370 97 3 0 chr13 22671225 22671523 -97073375 - AluSq SINE Alu -12 301 3 1768 185 0 7 chr13 22672715 22673007 -97071891 - AluJo SINE Alu -22 290 1 484 240 281 20 chr13 22673655 22673851 -97071047 - MIR SINE MIR -15 247 1 605 251 161 5 chr13 22675034 22675233 -97069665 - MIR SINE MIR 0 262 33 2947 16 0 0 chr13 22677282 22677600 -97067298 - AluYb8 SINE Alu 0 318 1 2349 104 7 0 chr13 22678260 22678567 -97066331 + AluSx SINE Alu 1 309 -3 296 251 277 26 chr13 22680718 22680873 -97064025 + MIR SINE MIR 6 121 -141 2017 161 0 3 chr13 22680873 22681171 -97063727 + AluJb SINE Alu 1 297 -15 296 251 277 26 chr13 22681171 22681210 -97063688 + MIR SINE MIR 121 249 -13 282 29 0 0 chr13 22681210 22681245 -97063653 + (TC)n Simple_repeat Simple_repeat 2 36 0 1237 178 26 42 chr13 22681263 22681527 -97063371 - MIR SINE MIR -1 261 2 248 372 0 12 chr13 22681722 22681808 -97063090 - MIR3 SINE MIR -11 197 113 243 21 0 64 chr13 22682551 22682598 -97062300 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1584 178 8 4 chr13 22682602 22682866 -97062032 - AluJo SINE Alu -30 282 18 508 206 163 14 chr13 22683480 22683621 -97061277 - MIR SINE MIR -9 253 92 333 307 161 21 chr13 22684361 22684641 -97060257 - L3 LINE CR1 -19 1558 1240 228 211 18 0 chr13 22685706 22685763 -97059135 - MER94 DNA DNA -75 59 2 366 228 11 33 chr13 22686529 22686621 -97058277 - MER5B DNA MER1_type 0 178 89 192 271 21 0 chr13 22686653 22686701 -97058197 + L3 LINE CR1 862 910 -667 722 259 51 22 chr13 22687406 22687632 -97057266 - MIR SINE MIR -39 223 1 218 345 52 17 chr13 22687674 22687790 -97057108 + MIR SINE MIR 120 239 -23 1337 131 10 5 chr13 22687835 22688034 -97056864 + AluJb SINE Alu 113 312 0 2228 118 7 0 chr13 22689168 22689473 -97055425 + AluSx SINE Alu 1 307 -5 1935 173 42 75 chr13 22690084 22690512 -97054386 + MLT2D LTR ERVL 1 414 0 7490 37 6 0 chr13 22692123 22693585 -97051313 + L1PA4 LINE L1 4688 6152 -3 5992 178 40 3 chr13 22693672 22695132 -97049766 - ERVL LTR ERVL -66 5698 4130 2143 73 42 35 chr13 22695269 22695556 -97049342 + AluY SINE Alu 1 289 -22 1980 112 4 0 chr13 22695556 22695821 -97049077 + AluSg1 SINE Alu 27 294 -15 225 0 0 0 chr13 22696411 22696436 -97048462 + (TA)n Simple_repeat Simple_repeat 1 25 0 795 22 0 0 chr13 22696436 22696527 -97048371 - L1PA5 LINE L1 -16 6138 6048 2442 51 0 29 chr13 22700365 22700678 -97044220 - AluY SINE Alu -7 304 1 410 334 64 15 chr13 22700822 22701063 -97043835 - L1M4c LINE L1 -4383 2000 1422 555 223 23 0 chr13 22701063 22701193 -97043705 - L1MA10 LINE L1 -1 6333 6201 2181 107 0 0 chr13 22701193 22701474 -97043424 + AluSg SINE Alu 1 281 -29 7016 226 76 15 chr13 22701527 22704464 -97040434 - L1ME1 LINE L1 -151 6015 2894 991 140 18 12 chr13 22704465 22704629 -97040269 + THE1C LTR MaLR 1 165 -210 383 202 50 20 chr13 22705553 22705652 -97039246 + MLT1C-int LTR MaLR 1269 1370 -1 1203 199 205 13 chr13 22705653 22706039 -97038859 + MLT1C LTR MaLR 1 460 -7 1129 115 0 12 chr13 22706121 22706286 -97038612 + L1PA8 LINE L1 6001 6163 -9 812 168 0 0 chr13 22707669 22707800 -97037098 + FLAM_C SINE Alu 3 133 0 1978 167 0 0 chr13 22707833 22708139 -97036759 + AluJb SINE Alu 1 306 -6 331 346 82 0 chr13 22708524 22708706 -97036192 + MIR SINE MIR 14 210 -52 1855 171 0 7 chr13 22708962 22709261 -97035637 - AluJb SINE Alu -15 297 1 780 253 127 0 chr13 22709261 22709498 -97035400 + MER58B DNA MER1_type 75 341 0 218 56 28 0 chr13 22710637 22710673 -97034225 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 386 239 57 18 chr13 22710753 22710962 -97033936 - Charlie7 DNA MER1_type 0 2612 2317 21 0 0 0 chr13 22710969 22710990 -97033908 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr13 22711233 22711263 -97033635 + (CA)n Simple_repeat Simple_repeat 2 31 0 228 125 0 0 chr13 22711497 22711529 -97033369 - Charlie7 DNA MER1_type -1479 1133 1102 184 244 78 44 chr13 22712077 22712167 -97032731 + L2 LINE L2 3164 3256 -16 218 260 10 62 chr13 22712169 22712265 -97032633 + (TGGG)n Simple_repeat Simple_repeat 2 92 0 2880 162 53 18 chr13 22712932 22713494 -97031404 + L1MB3 LINE L1 5601 6182 -1 21 0 0 0 chr13 22713494 22713515 -97031383 + AT_rich Low_complexity Low_complexity 1 21 0 1483 158 11 67 chr13 22713668 22713818 -97031080 - AluJb SINE Alu -24 288 131 192 40 0 0 chr13 22713818 22713843 -97031055 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1889 114 42 0 chr13 22713844 22714108 -97030790 - AluSq SINE Alu -30 283 9 1483 158 11 67 chr13 22714108 22714239 -97030659 - AluJb SINE Alu -180 132 21 333 250 11 11 chr13 22715165 22715257 -97029641 - Tigger1 DNA MER2_type -857 1561 1470 413 137 52 0 chr13 22715257 22715410 -97029488 + (TATAA)n Simple_repeat Simple_repeat 4 164 0 353 175 44 17 chr13 22715415 22715700 -97029198 + (TTATA)n Simple_repeat Simple_repeat 1 292 0 31 0 0 0 chr13 22715700 22715731 -97029167 + AT_rich Low_complexity Low_complexity 1 31 0 336 80 68 51 chr13 22715731 22715907 -97028991 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 582 85 73 0 chr13 22715903 22716067 -97028831 + (TA)n Simple_repeat Simple_repeat 1 176 0 298 148 49 16 chr13 22716085 22716207 -97028691 + (TA)n Simple_repeat Simple_repeat 1 126 0 2201 84 0 11 chr13 22716215 22716499 -97028399 - AluY SINE Alu -30 281 1 8998 123 42 20 chr13 22716499 22717331 -97027567 - Tigger1 DNA MER2_type -939 1479 601 2076 115 34 3 chr13 22717331 22717627 -97027271 - AluSx SINE Alu -7 305 1 8998 123 42 20 chr13 22717627 22718231 -97026667 - Tigger1 DNA MER2_type -1817 601 12 1907 173 42 75 chr13 22719513 22719941 -97024957 + MLT2D LTR ERVL 1 414 0 219 299 120 8 chr13 22721654 22721771 -97023127 + MIR SINE MIR 81 210 -52 1766 79 9 0 chr13 22721962 22722190 -97022708 + MER30 DNA MER1_type 1 230 0 2203 168 23 44 chr13 22722970 22723405 -97021493 + MSTB LTR MaLR 1 426 0 1365 88 0 6 chr13 22723683 22723854 -97021044 - AluSx SINE Alu -142 170 1 5039 126 23 88 chr13 22723854 22724870 -97020028 + Tigger3b DNA MER2_type 282 1231 0 4046 208 45 13 chr13 22724879 22726030 -97018868 + L1MB8 LINE L1 4316 5505 -675 1111 176 24 0 chr13 22726030 22726240 -97018658 + L1MB2 LINE L1 5950 6164 -7 3451 161 24 15 chr13 22726270 22726929 -97017969 + L1MB8 LINE L1 5514 6178 0 265 108 0 0 chr13 22727183 22727220 -97017678 - U2 snRNA snRNA -151 37 1 1726 185 18 0 chr13 22727536 22727822 -97017076 + AluJo SINE Alu 1 291 -21 1002 171 37 180 chr13 22727822 22727951 -97016947 + MLT1A2 LTR MaLR 34 89 -285 1461 133 41 5 chr13 22727951 22728169 -97016729 + AluJo SINE Alu 14 239 -73 1002 171 37 180 chr13 22728169 22728366 -97016532 + MLT1A2 LTR MaLR 89 313 -61 1704 140 92 4 chr13 22728625 22728897 -97016001 + AluSx SINE Alu 1 296 -16 267 301 21 11 chr13 22729899 22729992 -97014906 + L2 LINE L2 3179 3272 0 211 64 21 43 chr13 22730417 22730464 -97014434 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 4510 255 129 32 chr13 22730513 22730811 -97014087 + L1MD1 LINE L1 2618 2886 -3260 2278 118 0 6 chr13 22730811 22731124 -97013774 + AluSx SINE Alu 1 311 -1 4510 255 129 32 chr13 22731124 22732284 -97012614 + L1MD1 LINE L1 2886 3932 -2214 342 0 0 0 chr13 22732284 22732322 -97012576 + (CA)n Simple_repeat Simple_repeat 1 38 0 4510 255 129 32 chr13 22732322 22732390 -97012508 + L1MD1 LINE L1 3932 3992 -2154 1463 113 0 10 chr13 22732390 22732594 -97012304 + AluSc SINE Alu 83 284 -25 4510 255 129 32 chr13 22732594 22733433 -97011465 + L1MD1 LINE L1 3992 5261 -885 1059 187 93 45 chr13 22733430 22733719 -97011179 + L1MD1 LINE L1 5855 6157 -85 * 186 143 0 0 chr13 22736697 22736732 -97008166 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 28 71 0 0 chr13 22736795 22736851 -97008047 + AT_rich Low_complexity Low_complexity 1 56 0 200 111 28 0 chr13 22737816 22737852 -97007046 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 483 288 113 0 chr13 22738548 22738708 -97006190 + MER5B DNA MER1_type 1 178 0 817 207 0 0 chr13 22738720 22738870 -97006028 + MLT1A1 LTR MaLR 1 150 -215 618 238 33 0 chr13 22738950 22739101 -97005797 - MER5A DNA MER1_type 0 189 34 210 310 93 81 chr13 22739175 22739498 -97005400 + L2 LINE L2 2896 3222 -50 447 269 39 19 chr13 22741100 22741256 -97003642 - MER105 DNA DNA -21 183 25 226 280 80 0 chr13 22741926 22742001 -97002897 + MIR SINE MIR 62 142 -66 1814 148 7 30 chr13 22742273 22742570 -97002328 - AluJo SINE Alu -22 290 1 537 229 7 33 chr13 22742904 22743057 -97001841 + MIR SINE MIR 104 252 -10 2199 106 7 7 chr13 22745142 22745445 -96999453 + AluSx SINE Alu 1 303 -9 1209 219 33 17 chr13 22745967 22746269 -96998629 + L1MC2 LINE L1 6029 6335 -9 304 217 85 31 chr13 22746274 22746403 -96998495 + L1ME4a LINE L1 5984 6119 -2 200 308 64 41 chr13 22746832 22747004 -96997894 + MIR SINE MIR 81 256 -6 188 339 54 32 chr13 22747107 22747293 -96997605 + MIR3 SINE MIR 3 192 -16 509 326 32 5 chr13 22747670 22747857 -96997041 - MIR SINE MIR -25 237 46 2544 41 3 25 chr13 22748089 22748404 -96996494 + AluY SINE Alu 1 308 -3 306 275 11 11 chr13 22748918 22749009 -96995889 + MIR SINE MIR 172 262 0 3622 134 28 13 chr13 22749407 22750021 -96994877 + L1MB3 LINE L1 5559 6181 -2 315 267 100 0 chr13 22750446 22750536 -96994362 + MIR SINE MIR 56 154 -108 1936 132 35 0 chr13 22750541 22750829 -96994069 + AluSq SINE Alu 3 300 -13 1032 221 38 38 chr13 22750837 22751099 -96993799 + MLT1E LTR MaLR 332 593 0 1815 240 73 22 chr13 22751101 22751647 -96993251 - L1ME3 LINE L1 -104 6058 5485 326 250 23 0 chr13 22751650 22751738 -96993160 + MIR SINE MIR 117 206 -56 193 321 86 0 chr13 22751795 22751876 -96993022 - MIR SINE MIR -166 96 9 197 132 26 0 chr13 22752818 22752856 -96992042 + GA-rich Low_complexity Low_complexity 1 39 0 1320 162 46 12 chr13 22753378 22753619 -96991279 + MLT1A1 LTR MaLR 116 364 -1 775 245 125 14 chr13 22753858 22754066 -96990832 - MIR SINE MIR -14 248 18 423 281 136 25 chr13 22754236 22754435 -96990463 - MIR SINE MIR -14 248 28 352 263 73 47 chr13 22754476 22754667 -96990231 + MIR SINE MIR 16 207 -55 1818 189 20 85 chr13 22754706 22755202 -96989696 + MLT2C2 LTR ERVL 1 464 0 378 296 118 10 chr13 22756269 22756472 -96988426 + MER112 DNA MER1_type 3 227 -33 2946 147 68 9 chr13 22757532 22758076 -96986822 + L1MB3 LINE L1 5599 6174 -9 206 240 20 0 chr13 22761232 22761282 -96983616 + L2 LINE L2 3210 3260 -12 223 325 34 17 chr13 22761451 22761568 -96983330 + MIR SINE MIR 42 160 -102 312 247 169 0 chr13 22761739 22761828 -96983070 - MIR SINE MIR -82 180 77 246 244 252 9 chr13 22762444 22762559 -96982339 + LTR16C LTR ERVL 71 213 -278 529 200 25 0 chr13 22762581 22762701 -96982197 + LTR16C LTR ERVL 363 485 -6 375 163 11 22 chr13 22762939 22763031 -96981867 + GA-rich Low_complexity Low_complexity 3 93 0 1500 225 38 40 chr13 22763126 22763548 -96981350 + L1MC4a LINE L1 7346 7766 -42 685 140 0 0 chr13 22764378 22764478 -96980420 - FLAM_C SINE Alu -33 110 11 1990 126 7 0 chr13 22764491 22764793 -96980105 - AluSx SINE Alu -8 304 1 2294 66 0 7 chr13 22765600 22765901 -96978997 - AluY SINE Alu -12 299 1 1326 219 111 28 chr13 22766298 22766722 -96978176 + MLT1C LTR MaLR 1 459 -8 322 322 71 95 chr13 22766767 22766795 -96978103 + L1MC/D LINE L1 5322 5349 -2459 1700 168 0 25 chr13 22766795 22767110 -96977788 + AluJo SINE Alu 1 307 -5 322 322 71 95 chr13 22767110 22767364 -96977534 + L1MC/D LINE L1 5349 5597 -2211 2003 106 7 23 chr13 22767365 22767668 -96977230 - AluSx SINE Alu -14 298 1 1576 148 7 35 chr13 22767912 22768202 -96976696 - AluSx SINE Alu -22 290 9 516 248 36 22 chr13 22768259 22768396 -96976502 + MER74B LTR ERVL 67 205 -417 264 229 0 0 chr13 22768446 22768494 -96976404 - MIR SINE MIR -82 126 79 2634 26 0 3 chr13 22768557 22768869 -96976029 + AluYa5 SINE Alu 1 311 0 244 156 16 94 chr13 22768920 22768984 -96975914 - L2 LINE L2 0 3272 3214 263 175 18 0 chr13 22769125 22769182 -96975716 + CT-rich Low_complexity Low_complexity 1 58 0 2074 103 10 17 chr13 22769184 22769486 -96975412 - AluSp SINE Alu -2 311 12 2410 60 0 3 chr13 22769968 22770269 -96974629 - AluY SINE Alu -9 302 3 1811 188 135 12 chr13 22770479 22770895 -96974003 - MLT1C LTR MaLR 0 467 1 1934 148 0 7 chr13 22772685 22772995 -96971903 - AluSx SINE Alu -4 308 1 198 266 21 128 chr13 22773198 22773292 -96971606 - MIR SINE MIR -102 106 23 561 274 64 95 chr13 22773362 22773720 -96971178 - MLT1J LTR MaLR -54 457 111 279 178 41 27 chr13 22773659 22773732 -96971166 - LTR67 LTR ERVL -380 177 104 * 419 316 73 10 chr13 22774455 22774661 -96970237 - MARNA DNA Mariner -46 540 322 22 0 0 0 chr13 22776935 22776957 -96967941 + AT_rich Low_complexity Low_complexity 1 22 0 652 256 94 30 chr13 22778130 22778535 -96966363 + LTR33 LTR ERVL 1 467 -54 255 295 121 23 chr13 22778586 22778759 -96966139 - MIR SINE MIR -63 199 10 1457 154 39 29 chr13 22778827 22779106 -96965792 + AluJo SINE Alu 1 282 -30 735 277 98 5 chr13 22784977 22785201 -96959697 - MIR SINE MIR 0 262 18 186 217 0 43 chr13 22785699 22785745 -96959153 + L2 LINE L2 1402 1445 -1869 346 284 0 87 chr13 22786378 22786480 -96958418 + MIR SINE MIR 59 150 -112 2131 106 0 6 chr13 22786480 22786791 -96958107 + AluY SINE Alu 1 309 -2 346 284 0 87 chr13 22786791 22786815 -96958083 + MIR SINE MIR 150 174 -88 822 238 17 11 chr13 22786996 22787177 -96957721 + MER5A DNA MER1_type 1 182 -7 1733 182 21 49 chr13 22788584 22788969 -96955929 - MLT1A2 LTR MaLR 0 374 1 425 286 59 20 chr13 22788996 22789199 -96955699 + MIR SINE MIR 42 252 -10 1298 204 106 0 chr13 22789341 22789606 -96955292 + MLT1A1 LTR MaLR 73 365 0 1639 259 21 42 chr13 22789608 22790041 -96954857 + MLT1F LTR MaLR 61 485 -57 2006 133 56 19 chr13 22790041 22790363 -96954535 - MER1B DNA MER1_type 0 337 4 1639 259 21 42 chr13 22790363 22790407 -96954491 + MLT1F LTR MaLR 485 528 -14 2157 119 3 0 chr13 22790725 22791036 -96953862 + AluSp SINE Alu 1 312 -1 238 283 0 0 chr13 22791285 22791338 -96953560 + (CA)n Simple_repeat Simple_repeat 1 53 0 2155 117 0 0 chr13 22791788 22792097 -96952801 - AluSc SINE Alu 0 309 1 1452 104 0 5 chr13 22792165 22792366 -96952532 - AluSx SINE Alu -112 200 1 192 247 0 41 chr13 22792662 22792735 -96952163 + L2 LINE L2 2013 2082 -1232 199 107 0 0 chr13 22793082 22793110 -96951788 - L2 LINE L2 -1 3271 3244 195 42 0 0 chr13 22793112 22793136 -96951762 + (TG)n Simple_repeat Simple_repeat 1 24 0 260 222 287 9 chr13 22793555 22793663 -96951235 - L2 LINE L2 -1254 2060 1923 231 310 99 30 chr13 22793706 22793938 -96950960 + L1M4 LINE L1 3596 3843 -2303 1775 157 7 0 chr13 22793981 22794261 -96950637 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr13 22794447 22794469 -96950429 + AT_rich Low_complexity Low_complexity 1 22 0 1308 200 48 10 chr13 22794478 22794768 -96950130 + AluJo SINE Alu 1 301 -11 357 338 38 8 chr13 22794958 22795091 -96949807 + L2 LINE L2 3134 3270 -2 783 229 60 28 chr13 22795706 22795955 -96948943 + L1ME LINE L1 5539 5795 -326 4000 68 9 4 chr13 22796199 22796725 -96948173 + L1PA6 LINE L1 5625 6153 -1 1259 180 56 88 chr13 22797383 22797760 -96947138 + MLT1A1 LTR MaLR 1 365 0 243 0 0 0 chr13 22798422 22798449 -96946449 + (T)n Simple_repeat Simple_repeat 1 27 0 1403 207 56 3 chr13 22799354 22799639 -96945259 + AluJb SINE Alu 1 300 -2 2376 135 25 3 chr13 22799639 22800014 -96944884 - MLT1B LTR MaLR -8 388 1 199 279 63 76 chr13 22800120 22800199 -96944699 - L2 LINE L2 -1 3312 3235 1737 137 0 53 chr13 22800248 22800547 -96944351 + AluJb SINE Alu 1 283 -29 216 0 0 0 chr13 22800550 22800574 -96944324 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 216 243 57 14 chr13 22800924 22800994 -96943904 - MIR SINE MIR -7 255 183 257 0 30 0 chr13 22802128 22802161 -96942737 + (TC)n Simple_repeat Simple_repeat 1 34 0 977 172 12 6 chr13 22802184 22802347 -96942551 - FRAM SINE Alu -2 164 1 4568 189 25 16 chr13 22802655 22802913 -96941985 + L1MB2 LINE L1 4899 5153 -1018 2072 126 3 0 chr13 22802913 22803215 -96941683 + AluSx SINE Alu 1 303 -9 4568 189 25 16 chr13 22803215 22804215 -96940683 + L1MB2 LINE L1 5153 6171 0 377 247 59 26 chr13 22804972 22805097 -96939801 + MIR SINE MIR 19 152 -75 237 167 0 0 chr13 22805196 22805250 -96939648 + GA-rich Low_complexity Low_complexity 1 54 0 269 240 52 65 chr13 22805540 22805694 -96939204 - L1ME3A LINE L1 0 6170 6019 361 305 41 25 chr13 22805839 22806036 -96938862 - L1MC5 LINE L1 -440 7521 7322 609 249 116 6 chr13 22806157 22806338 -96938560 + MER3 DNA MER1_type 9 209 0 529 252 51 34 chr13 22806339 22806573 -96938325 - L1MC5 LINE L1 -761 7200 6963 747 192 99 29 chr13 22806578 22806734 -96938164 - AluJo SINE Alu -9 303 133 2241 111 0 0 chr13 22806734 22807040 -96937858 - AluSc SINE Alu -3 306 1 747 192 99 29 chr13 22807040 22807055 -96937843 - AluJo SINE Alu -179 133 120 1545 165 6 115 chr13 22807072 22807411 -96937487 - AluJb SINE Alu 0 302 1 313 259 140 57 chr13 22807413 22807606 -96937292 - L1M4c LINE L1 -5298 1086 878 438 321 207 0 chr13 22808297 22808490 -96936408 + MIR SINE MIR 28 260 -2 674 306 79 45 chr13 22808537 22809089 -96935809 + L2 LINE L2 2481 3114 -199 1886 105 28 14 chr13 22809089 22809374 -96935524 - AluSx SINE Alu -23 289 1 674 306 79 45 chr13 22809374 22809576 -96935322 + L2 LINE L2 3114 3308 -5 3882 167 23 20 chr13 22810090 22810827 -96934071 - L1MB3 LINE L1 -2 6181 5443 877 207 0 6 chr13 22810910 22811074 -96933824 - FAM SINE Alu -22 163 1 21 57 0 0 chr13 22811089 22811124 -96933774 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr13 22811968 22811999 -96932899 + AT_rich Low_complexity Low_complexity 1 31 0 4842 240 42 24 chr13 22813505 22813879 -96931019 + L1M4 LINE L1 11 377 -6165 1726 149 43 4 chr13 22813879 22814160 -96930738 - AluSx SINE Alu -20 292 1 4842 240 42 24 chr13 22814160 22815033 -96929865 + L1M4 LINE L1 377 1281 -5261 240 306 176 23 chr13 22815034 22815380 -96929518 - L2 LINE L2 -694 2620 2222 1417 188 41 80 chr13 22815584 22815946 -96928952 + MLT1A1 LTR MaLR 1 348 -17 437 217 19 9 chr13 22815960 22816066 -96928832 + MER53 DNA DNA 34 140 -49 421 306 56 19 chr13 22817288 22817448 -96927450 + MIR SINE MIR 1 166 -96 767 186 70 12 chr13 22819349 22819521 -96925377 - MER53 DNA DNA 0 189 8 248 247 161 21 chr13 22820158 22820251 -96924647 - L3 LINE CR1 -375 1202 1097 1929 135 0 13 chr13 22820261 22820565 -96924333 + AluSx SINE Alu 1 300 -12 186 395 0 12 chr13 22820704 22820790 -96924108 - L3 LINE CR1 -634 943 859 809 108 0 17 chr13 22820824 22820944 -96923954 - FLAM_C SINE Alu -19 124 7 2865 3 0 0 chr13 22822833 22823149 -96921749 - AluYb8 SINE Alu -2 316 1 185 378 22 0 chr13 22823401 22823491 -96921407 + MIR SINE MIR 57 148 -114 293 316 75 23 chr13 22823644 22823818 -96921080 + L1MC/D LINE L1 5533 5715 -2093 25 0 0 0 chr13 22823959 22823984 -96920914 + AT_rich Low_complexity Low_complexity 1 25 0 858 209 16 21 chr13 22823990 22824177 -96920721 - AluJo SINE Alu -10 302 117 180 0 0 0 chr13 22824350 22824370 -96920528 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 374 254 90 8 chr13 22825860 22825994 -96918904 + L1MA9 LINE L1 5996 6140 -172 384 340 107 40 chr13 22826249 22826853 -96918045 + L2 LINE L2 2639 3269 -3 466 322 84 10 chr13 22827132 22827334 -96917564 + MIR SINE MIR 12 228 -34 250 257 14 57 chr13 22827383 22827453 -96917445 - MIR SINE MIR -180 82 16 754 252 33 0 chr13 22828048 22828262 -96916636 - L1PA16 LINE L1 -1 6165 5945 331 56 0 19 chr13 22828404 22828458 -96916440 - AluSc SINE Alu 0 299 247 521 291 132 24 chr13 22830312 22830563 -96914335 - L2 LINE L2 -5 3308 3031 * 526 269 59 90 chr13 22830533 22830590 -96914308 + MIR SINE MIR 14 71 -191 1911 186 38 28 chr13 22830590 22830987 -96913911 + MER57A LTR ERV1 1 401 -2 526 269 59 90 chr13 22830987 22831185 -96913713 + MIR SINE MIR 71 261 -1 2475 139 67 5 chr13 22831212 22831658 -96913240 + L1MB2 LINE L1 5689 6162 -9 235 297 59 30 chr13 22831753 22831854 -96913044 + MER91C DNA MER1_type 29 132 -8 510 264 76 156 chr13 22831891 22832494 -96912404 - LTR67 LTR ERVL -1 556 2 367 323 83 0 chr13 22834165 22834298 -96910600 + MIR SINE MIR 93 236 -26 1242 254 59 67 chr13 22834610 22835134 -96909764 - MLT2B1 LTR ERVL 0 520 1 3306 171 11 19 chr13 22836043 22836674 -96908224 + L1PA13 LINE L1 4127 4754 -1392 5555 98 44 43 chr13 22836674 22837683 -96907215 + L1PA13 LINE L1 5151 6161 -2 3306 171 11 19 chr13 22837683 22837695 -96907203 + L1PA13 LINE L1 4754 4765 -1381 1935 123 3 0 chr13 22837704 22837988 -96906910 + AluSx SINE Alu 23 307 -5 433 320 39 0 chr13 22839261 22839389 -96905509 + MIR SINE MIR 71 203 -59 556 330 56 26 chr13 22839609 22839842 -96905056 - MIR SINE MIR -2 260 21 1376 187 88 38 chr13 22840646 22840949 -96903949 - L1MD3 LINE L1 -232 7763 7440 2008 194 14 6 chr13 22840949 22841309 -96903589 - MLT1A1 LTR MaLR -2 363 1 1376 187 88 38 chr13 22841309 22841347 -96903551 - L1MD3 LINE L1 -555 7440 7405 239 323 135 51 chr13 22841532 22842223 -96902675 - L2 LINE L2 -2358 956 208 639 174 25 0 chr13 22842273 22842394 -96902504 + L1MA8 LINE L1 6164 6287 -4 219 341 81 8 chr13 22842404 22842527 -96902371 - L2 LINE L2 -1 3271 3140 249 83 0 0 chr13 22842943 22842979 -96901919 + (CA)n Simple_repeat Simple_repeat 1 36 0 299 264 72 42 chr13 22843081 22843248 -96901650 - MIR3 SINE MIR -16 192 21 377 287 31 47 chr13 22843659 22843788 -96901110 + MIR SINE MIR 8 134 -128 5140 133 9 56 chr13 22843806 22844651 -96900247 - L1PA14 LINE L1 -1 6160 5375 1536 150 87 0 chr13 22844651 22844905 -96899993 - AluSg SINE Alu -34 276 1 5140 133 9 56 chr13 22844905 22845647 -96899251 - L1PA14 LINE L1 -786 5375 4600 2087 157 16 0 chr13 22845647 22846011 -96898887 + L1P LINE L1 3958 4327 -1819 202 299 102 16 chr13 22846012 22846139 -96898759 + MIR SINE MIR 125 262 0 219 266 0 110 chr13 22846347 22846415 -96898483 - L2 LINE L2 -20 3293 3239 2106 93 0 0 chr13 22846415 22846720 -96898178 + AluY SINE Alu 1 305 0 219 266 0 110 chr13 22846720 22846759 -96898139 - L2 LINE L2 -74 3239 3197 376 294 9 0 chr13 22847256 22847365 -96897533 + MIR SINE MIR 116 225 -37 1521 48 0 5 chr13 22848416 22848602 -96896296 + L1PA3 LINE L1 5968 6152 -3 255 61 0 0 chr13 22848646 22848679 -96896219 + (GA)n Simple_repeat Simple_repeat 1 33 0 595 138 0 0 chr13 22848679 22848766 -96896132 + LTR34 LTR ERV1 582 668 -31 442 243 115 40 chr13 22849025 22849173 -96895725 - L2 LINE L2 -1 3312 3154 368 284 12 77 chr13 22849881 22850050 -96894848 - MIR3 SINE MIR 0 208 51 182 278 33 44 chr13 22850065 22850155 -96894743 + L2 LINE L2 3184 3272 0 689 259 96 23 chr13 22850157 22850377 -96894521 - MIR SINE MIR -26 236 1 247 283 30 50 chr13 22852126 22852225 -96892673 - MIR3 SINE MIR -27 181 85 257 214 57 29 chr13 22852843 22852913 -96891985 - LTR33 LTR ERVL -2 519 448 559 262 115 16 chr13 22853023 22853206 -96891692 - LTR33 LTR ERVL -319 202 2 188 280 217 35 chr13 22853448 22853591 -96891307 - L2 LINE L2 -10 3262 3094 684 168 18 0 chr13 22853749 22853862 -96891036 - FLAM_C SINE Alu -18 115 1 774 177 8 0 chr13 22853935 22854059 -96890839 + FLAM_C SINE Alu 2 126 -17 2293 92 0 0 chr13 22854075 22854381 -96890517 + AluSx SINE Alu 1 306 -6 360 229 14 0 chr13 22854448 22854518 -96890380 - L2 LINE L2 -18 3254 3184 2327 97 3 0 chr13 22854567 22854877 -96890021 + AluSp SINE Alu 1 311 -2 261 0 0 0 chr13 22855069 22855098 -96889800 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chr13 22857110 22857138 -96887760 + AT_rich Low_complexity Low_complexity 1 28 0 5708 139 34 13 chr13 22857150 22857602 -96887296 - L1MA5A LINE L1 -29 6268 5827 279 0 0 0 chr13 22857602 22857633 -96887265 + (TG)n Simple_repeat Simple_repeat 2 32 0 5708 139 34 13 chr13 22857633 22858214 -96886684 - L1MA5A LINE L1 -470 5827 5209 1321 176 4 4 chr13 22858199 22858460 -96886438 + L1MA5A LINE L1 4963 5223 -923 * 21 36 0 0 chr13 22858649 22858677 -96886221 + AT_rich Low_complexity Low_complexity 1 28 0 737 285 162 27 chr13 22858750 22860165 -96884733 + L1ME1 LINE L1 3953 5572 -592 201 289 0 0 chr13 22860207 22860259 -96884639 - MIR SINE MIR -2 260 209 292 271 67 36 chr13 22860411 22860612 -96884286 + L1ME1 LINE L1 5758 5962 -204 5351 59 6 1 chr13 22860885 22861550 -96883348 + L1PA7 LINE L1 5472 6139 -15 581 264 96 42 chr13 22861792 22861804 -96883094 + L1ME LINE L1 4157 4167 -1979 1528 170 3 23 chr13 22861804 22862110 -96882788 + AluJo SINE Alu 1 300 -12 581 264 96 42 chr13 22862110 22862574 -96882324 + L1ME LINE L1 4167 4659 -1487 207 191 0 0 chr13 22862608 22862655 -96882243 + A-rich Low_complexity Low_complexity 1 47 0 271 350 61 19 chr13 22862870 22863084 -96881814 + L1ME LINE L1 5376 5598 -523 918 206 34 48 chr13 22863726 22864018 -96880880 + pTR5 LTR ERV1 741 1028 -1410 2855 182 118 39 chr13 22864201 22864838 -96880060 + LTR12 LTR ERV1 2 688 0 735 135 92 0 chr13 22864838 22864975 -96879923 + LTR12 LTR ERV1 270 714 0 686 23 11 0 chr13 22866115 22866203 -96878695 + (CA)n Simple_repeat Simple_repeat 2 90 0 2008 188 261 12 chr13 22866299 22866901 -96877997 + Tigger3(Golem) DNA MER2_type 2278 3029 0 1101 204 92 55 chr13 22866916 22867318 -96877580 - MLT2B1 LTR ERVL -40 475 13 274 239 42 14 chr13 22867326 22867397 -96877501 - HERVL-B1 LTR ERVL 0 5654 5582 775 72 0 0 chr13 22867401 22867498 -96877400 + L1PA4 LINE L1 2 98 -6048 * 39032 38 9 1 chr13 22867496 22872986 -96871912 + L1PA4 LINE L1 623 6152 -3 6310 173 31 9 chr13 22873073 22875238 -96869660 - ERVL-B2 LTR ERVL -66 5698 3433 1765 128 15 15 chr13 22875245 22875510 -96869388 - ERVL-B2 LTR ERVL -2909 2855 2591 * 3525 173 5 9 chr13 22875495 22875529 -96869369 - ERVL-B2 LTR ERVL -3432 2332 2299 1461 159 120 19 chr13 22875529 22875837 -96869061 + MER44D DNA MER2_type 1 609 0 3525 173 5 9 chr13 22875837 22876381 -96868517 - ERVL-B2 LTR ERVL -3465 2299 1756 835 211 0 0 chr13 22876412 22876568 -96868330 - FRAM SINE Alu -19 157 2 7769 207 70 10 chr13 22876568 22878218 -96866680 - ERVL-B2 LTR ERVL -4013 1751 2 291 143 0 57 chr13 22878219 22878289 -96866609 - MLT2B2 LTR ERVL 0 554 455 181 156 16 16 chr13 22878291 22878355 -96866543 + (TA)n Simple_repeat Simple_repeat 2 65 0 2103 185 131 19 chr13 22878381 22878809 -96866089 - MLT2B2 LTR ERVL -39 476 1 583 82 27 49 chr13 22880679 22880862 -96864036 + (CA)n Simple_repeat Simple_repeat 1 179 0 553 83 29 51 chr13 22880881 22881238 -96863660 + (CA)n Simple_repeat Simple_repeat 1 348 0 389 141 34 40 chr13 22881304 22881481 -96863417 + (CA)n Simple_repeat Simple_repeat 1 176 0 343 139 26 55 chr13 22881503 22881856 -96863042 + (CA)n Simple_repeat Simple_repeat 1 343 0 273 130 24 49 chr13 22881909 22882032 -96862866 + (CA)n Simple_repeat Simple_repeat 1 120 0 340 190 33 37 chr13 22882058 22882531 -96862367 + (CA)n Simple_repeat Simple_repeat 1 471 0 188 341 57 0 chr13 22883738 22883861 -96861037 + L2 LINE L2 2927 3056 -257 247 295 48 19 chr13 22885477 22885582 -96859316 + MIR SINE MIR 116 223 -39 219 132 0 53 chr13 22889278 22889354 -96855544 + (GAATG)n Simple_repeat Simple_repeat 3 74 0 336 276 45 35 chr13 22889951 22890106 -96854792 + MLT1E3 LTR MaLR 243 406 -218 180 216 0 0 chr13 22890830 22890881 -96854017 + T-rich Low_complexity Low_complexity 1 51 0 186 156 0 0 chr13 22891510 22891542 -96853356 + L2 LINE L2 3241 3272 0 232 272 136 19 chr13 22891729 22891832 -96853066 - L1MC4 LINE L1 -1 8041 7927 396 371 84 16 chr13 22892283 22892652 -96852246 - L1ME LINE L1 -472 5698 5305 388 318 95 56 chr13 22892816 22893044 -96851854 - L1ME LINE L1 -838 5308 5090 2055 110 40 0 chr13 22893044 22893344 -96851554 + AluSx SINE Alu 1 312 0 388 318 95 56 chr13 22893344 22893684 -96851214 - L1ME LINE L1 -1056 5090 4765 3931 179 51 60 chr13 22893684 22894647 -96850251 - LTR13 LTR ERVK 0 954 1 388 318 95 56 chr13 22894647 22895349 -96849549 - L1ME LINE L1 -1381 4765 3987 197 132 26 0 chr13 22897131 22897169 -96847729 + (TA)n Simple_repeat Simple_repeat 1 39 0 1304 96 0 119 chr13 22897188 22897449 -96847449 - AluSc SINE Alu -7 302 73 1464 172 62 0 chr13 22897469 22897725 -96847173 - L1MC3 LINE L1 -830 6955 6684 1330 262 51 0 chr13 22897729 22898141 -96846757 + L1MB8 LINE L1 1046 1478 -4906 677 192 7 34 chr13 22898142 22898288 -96846610 - MER4D LTR ERV1 0 903 762 2931 117 60 7 chr13 22898294 22898748 -96846150 + MER9 LTR ERVK 34 511 0 2320 174 30 111 chr13 22898748 22899449 -96845449 - MER4E LTR ERV1 -135 644 1 1146 261 127 40 chr13 22899456 22900234 -96844664 + L1MB8 LINE L1 1632 2477 -4086 712 182 15 15 chr13 22900248 22900380 -96844518 + FLAM_C SINE Alu 1 132 -1 8034 66 6 5 chr13 22900393 22901399 -96843499 + LTR13 LTR ERVK 1 1007 0 1128 101 6 24 chr13 22901399 22901567 -96843331 + AluSg/x SINE Alu 139 303 -7 10306 219 37 37 chr13 22901568 22901728 -96843170 + L1MB8 LINE L1 2449 2608 -3962 1978 149 0 0 chr13 22901728 22902030 -96842868 + AluSg SINE Alu 1 302 -8 10306 219 37 37 chr13 22902030 22903643 -96841255 + L1MB8 LINE L1 2608 4220 -2350 2185 105 0 0 chr13 22903643 22903937 -96840961 + AluSg SINE Alu 1 294 -16 10306 219 37 37 chr13 22903937 22906135 -96838763 + L1MB8 LINE L1 4220 6570 0 401 253 105 49 chr13 22906276 22906580 -96838318 + L1M4 LINE L1 3673 3993 -2153 445 308 104 51 chr13 22906606 22907057 -96837841 + REP3 LTR ERV 1 475 -87 21 36 0 0 chr13 22907355 22907383 -96837515 + AT_rich Low_complexity Low_complexity 1 28 0 438 244 0 0 chr13 22907895 22907985 -96836913 + LTR33A LTR ERVL 434 523 0 368 255 27 53 chr13 22908322 22908510 -96836388 + L1P5 LINE L1 4886 5068 -1078 2089 129 30 0 chr13 22908664 22908967 -96835931 + AluSx SINE Alu 1 312 0 334 291 83 29 chr13 22909047 22909288 -96835610 + L1P5 LINE L1 5294 5547 -609 1270 214 38 70 chr13 22909377 22909774 -96835124 - MLT1B LTR MaLR 0 390 7 333 106 0 0 chr13 22910665 22910712 -96834186 - MLT1E1 LTR MaLR -423 231 185 1031 242 36 4 chr13 22911673 22911994 -96832904 + MLT1A1 LTR MaLR 13 446 -21 420 200 62 31 chr13 22912138 22912268 -96832630 + MIR SINE MIR 50 183 -79 856 177 29 0 chr13 22913205 22913380 -96831518 + L1MB7 LINE L1 5288 5467 -707 698 155 8 25 chr13 22913397 22913636 -96831262 + GA-rich Low_complexity Low_complexity 1 234 0 438 176 22 33 chr13 22913802 22913893 -96831005 + L1MB7 LINE L1 5484 5573 -607 1026 233 43 30 chr13 22913938 22914239 -96830659 + L1MB7 LINE L1 5819 6123 -61 188 209 0 0 chr13 22914274 22914317 -96830581 - MIR SINE MIR -120 142 100 605 221 16 0 chr13 22919123 22919244 -96825654 - MER58B DNA MER1_type 0 341 219 1556 84 23 28 chr13 22919244 22919458 -96825440 + THE1B LTR MaLR 1 213 -151 1621 199 46 35 chr13 22920728 22921132 -96823766 + L1M2c LINE L1 1563 1974 -4875 1937 164 10 0 chr13 22921132 22921436 -96823462 + AluSx SINE Alu 3 309 -3 1621 199 46 35 chr13 22921436 22921463 -96823435 + L1M2c LINE L1 1974 1999 -4850 3628 176 11 28 chr13 22921478 22921581 -96823317 + L1M2c LINE L1 2230 2333 -4515 1852 166 7 7 chr13 22921581 22921882 -96823016 + AluSx SINE Alu 2 302 -10 3628 176 11 28 chr13 22921882 22922883 -96822015 + L1M2c LINE L1 2333 3319 -3529 1544 107 34 0 chr13 22922890 22923124 -96821774 + L1MA5 LINE L1 6056 6297 -3 1003 252 24 18 chr13 22923192 22923451 -96821447 - MLT1H LTR MaLR -248 301 1 4563 236 38 28 chr13 22923905 22925121 -96819777 + L1PA12 LINE L1 10 2319 -5265 3636 82 21 10 chr13 22925110 22925633 -96819265 + L1PA11 LINE L1 5259 5787 -387 * 21 0 0 0 chr13 22926340 22926361 -96818537 + AT_rich Low_complexity Low_complexity 1 21 0 2639 114 25 0 chr13 22926660 22927056 -96817842 + L1PA11 LINE L1 5769 6174 0 311 246 36 18 chr13 22927129 22927239 -96817659 - L1ME3 LINE L1 -2 6160 6049 * 2954 249 112 24 chr13 22927234 22927877 -96817021 - L1M4 LINE L1 -1130 5016 4431 1425 158 102 39 chr13 22927877 22928162 -96816736 - AluJo SINE Alu -9 303 1 2954 249 112 24 chr13 22928162 22928756 -96816142 - L1M4 LINE L1 -1715 4431 3670 558 43 0 0 chr13 22930858 22930927 -96813971 + (TA)n Simple_repeat Simple_repeat 1 69 0 2332 79 0 4 chr13 22931114 22931447 -96813451 + AluSq SINE Alu 5 336 0 483 288 192 30 chr13 22931451 22931889 -96813009 - L1ME4a LINE L1 -293 5828 5320 233 255 0 0 chr13 22932546 22932597 -96812301 + (TA)n Simple_repeat Simple_repeat 2 52 0 352 280 20 0 chr13 22934438 22934538 -96810360 + GA-rich Low_complexity Low_complexity 1 102 0 5572 152 52 11 chr13 22934672 22934937 -96809961 - L1MA8 LINE L1 0 6291 6039 2213 119 0 3 chr13 22934937 22935239 -96809659 + AluSq SINE Alu 3 303 -10 5572 152 52 11 chr13 22935239 22936428 -96808470 - L1MA8 LINE L1 -252 6039 4774 325 195 26 13 chr13 22936934 22937011 -96807887 + MER116 DNA Mariner 3 80 0 454 287 98 68 chr13 22937297 22937429 -96807469 - L1ME4a LINE L1 -847 5299 5172 1941 119 0 34 chr13 22937429 22937723 -96807175 - AluJb SINE Alu -15 297 14 454 287 98 68 chr13 22937723 22938061 -96806837 - L1ME4a LINE L1 -974 5172 4815 415 245 186 10 chr13 22938062 22938266 -96806632 - L1ME4a LINE L1 -1371 4775 4536 4262 267 110 35 chr13 22938385 22938439 -96806459 - L1ME LINE L1 -399 5763 5714 2063 132 3 0 chr13 22938439 22938735 -96806163 - AluSx SINE Alu -15 297 1 4262 267 110 35 chr13 22938735 22940065 -96804833 - L1ME LINE L1 -448 5714 4485 1844 148 0 30 chr13 22940065 22940369 -96804529 - AluJb SINE Alu -17 295 1 4262 267 110 35 chr13 22940369 22940604 -96804294 - L1ME LINE L1 -1677 4485 4269 333 0 0 0 chr13 22940604 22940641 -96804257 + (TG)n Simple_repeat Simple_repeat 1 37 0 4262 267 110 35 chr13 22940641 22940672 -96804226 - L1ME LINE L1 -1893 4269 4242 1953 143 13 7 chr13 22940672 22940980 -96803918 + AluSx SINE Alu 1 310 -2 4262 267 110 35 chr13 22940980 22942302 -96802596 - L1ME LINE L1 -1920 4242 2565 571 301 42 32 chr13 22942508 22942820 -96802078 - L1ME4a LINE L1 -1995 4151 3837 3236 135 22 15 chr13 22942909 22943221 -96801677 - L1PA16 LINE L1 -21 6145 5826 2396 104 0 0 chr13 22943221 22943528 -96801370 - AluSq SINE Alu -6 307 1 3236 135 22 15 chr13 22943528 22943755 -96801143 - L1PA16 LINE L1 -340 5826 5602 543 108 11 0 chr13 22943748 22943841 -96801057 - L1PA16 LINE L1 -774 5392 5299 * 1851 81 3 88 chr13 22943842 22944138 -96800760 - LTR14B LTR ERVK -321 287 17 340 309 121 18 chr13 22944231 22944396 -96800502 - MER5A DNA MER1_type 0 189 8 217 378 0 12 chr13 22944431 22944513 -96800385 - MER5A DNA MER1_type -31 158 78 2343 180 47 16 chr13 22944656 22945150 -96799748 - LTR22 LTR ERVK 0 509 1 1770 166 0 14 chr13 22945283 22945572 -96799326 + AluJo SINE Alu 1 285 -27 2370 101 0 3 chr13 22945583 22945891 -96799007 + AluSq SINE Alu 1 307 -6 374 287 161 36 chr13 22947087 22947310 -96797588 + MIR SINE MIR 2 252 -10 486 226 211 39 chr13 22947464 22947623 -96797275 - Charlie7 DNA MER1_type -3 2609 2479 2134 128 0 0 chr13 22947623 22947912 -96796986 - AluSc SINE Alu -20 289 1 486 226 211 39 chr13 22947912 22948089 -96796809 - Charlie7 DNA MER1_type -133 2479 2215 21 36 0 0 chr13 22948238 22948266 -96796632 + AT_rich Low_complexity Low_complexity 1 28 0 1857 150 37 0 chr13 22948271 22948565 -96796333 + AluSx SINE Alu 7 311 -1 1774 143 57 4 chr13 22948687 22948967 -96795931 - AluJo SINE Alu -16 296 2 602 141 8 125 chr13 22948990 22949118 -96795780 - FLAM_C SINE Alu -18 125 13 692 218 100 66 chr13 22949175 22949556 -96795342 - L1MC5 LINE L1 -285 7676 7283 2380 68 0 39 chr13 22949679 22949988 -96794910 - AluY SINE Alu -14 297 1 1835 155 4 0 chr13 22950029 22950326 -96794572 + AluJb SINE Alu 5 302 0 399 217 0 0 chr13 22950510 22950616 -96794282 + (TATATG)n Simple_repeat Simple_repeat 2 107 0 652 282 160 29 chr13 22950619 22950931 -96793967 + MER115 DNA AcHobo 54 406 -287 772 202 5 72 chr13 22950948 22951141 -96793757 + MER115 DNA AcHobo 514 693 0 1764 57 17 26 chr13 22951696 22951926 -96792972 + AluY SINE Alu 83 310 -1 820 200 24 29 chr13 22952373 22952543 -96792355 - FRAM SINE Alu -10 166 1 21 0 0 0 chr13 22952936 22952957 -96791941 + AT_rich Low_complexity Low_complexity 1 21 0 496 267 64 13 chr13 22953247 22953483 -96791415 + L2 LINE L2 2033 2280 -1034 1712 147 34 4 chr13 22953513 22953778 -96791120 - AluJb SINE Alu -39 273 1 1197 274 43 29 chr13 22953778 22954486 -96790412 - L1ME LINE L1 -4823 1257 536 776 316 41 64 chr13 22954630 22955161 -96789737 - L1ME LINE L1 -5539 531 13 21 0 0 0 chr13 22955350 22955371 -96789527 + AT_rich Low_complexity Low_complexity 1 21 0 1852 171 0 3 chr13 22955376 22955675 -96789223 + AluJb SINE Alu 1 298 -14 437 219 57 19 chr13 22955805 22955910 -96788988 + MLT1J2 LTR MaLR 3 111 -339 440 292 105 28 chr13 22955972 22956170 -96788728 + MLT1J2 LTR MaLR 238 448 -2 670 209 95 0 chr13 22956549 22956697 -96788201 + L1PA16 LINE L1 5999 6160 -6 1078 61 30 0 chr13 22956901 22957032 -96787866 - AluYb8 SINE Alu -183 135 1 1156 172 23 0 chr13 22957076 22957297 -96787601 - L1MA4 LINE L1 0 6300 6075 970 211 22 64 chr13 22957360 22957685 -96787213 - L1MB7 LINE L1 0 6321 6032 2192 91 66 90 chr13 22958056 22958462 -96786436 + LTR14B LTR ERVK 1 608 0 417 255 0 0 chr13 22958462 22958560 -96786338 - MIR SINE MIR -106 156 59 496 239 92 0 chr13 22958653 22958783 -96786115 - MIR SINE MIR -65 197 56 1567 191 26 26 chr13 22960641 22960950 -96783948 + AluJo SINE Alu 2 310 -2 184 309 0 15 chr13 22960965 22961033 -96783865 - MIR3 SINE MIR -32 176 110 322 182 76 0 chr13 22961106 22961172 -96783726 - MIR SINE MIR -60 148 78 1816 171 0 17 chr13 22961320 22961613 -96783285 - AluJo SINE Alu -24 288 1 22 0 0 0 chr13 22962032 22962054 -96782844 + AT_rich Low_complexity Low_complexity 1 22 0 361 262 72 42 chr13 22962163 22962703 -96782195 + L1MC/D LINE L1 4934 5483 -750 940 145 14 0 chr13 22962725 22962870 -96782028 + FAM SINE Alu 28 174 -11 1078 89 0 7 chr13 22962928 22963063 -96781835 - AluSq/x SINE Alu -179 134 1 920 136 80 2 chr13 22963174 22963444 -96781454 - MER1B DNA MER1_type -2 337 1 1209 111 0 0 chr13 22964186 22964348 -96780550 + FRAM SINE Alu 1 162 -14 538 186 73 8 chr13 22964550 22964674 -96780224 - L1MB4 LINE L1 -1 6179 6048 2120 113 26 26 chr13 22965131 22965441 -96779457 + AluSg SINE Alu 1 310 0 286 266 165 13 chr13 22965601 22965759 -96779139 - MIR SINE MIR -79 183 2 250 231 37 74 chr13 22965775 22965883 -96779015 - L1MB4 LINE L1 -2330 5478 5375 1650 162 7 4 chr13 22965906 22966177 -96778721 - AluJb SINE Alu -40 272 1 825 118 8 8 chr13 22966185 22966304 -96778594 - FLAM_C SINE Alu -19 124 6 238 274 94 9 chr13 22968465 22968571 -96776327 - L2 LINE L2 -1 3271 3157 880 234 84 5 chr13 22968813 22969027 -96775871 - L1ME1 LINE L1 -8 6158 5928 23 33 0 0 chr13 22969336 22969366 -96775532 + AT_rich Low_complexity Low_complexity 1 30 0 1250 161 17 132 chr13 22969675 22970086 -96774812 + LTR49 LTR ERV1 1 485 -254 338 174 181 87 chr13 22970109 22970247 -96774651 + LTR48 LTR ERV1 607 757 -30 2242 228 74 54 chr13 22970324 22970970 -96773928 + MER21B LTR ERV1 98 756 -107 1435 91 106 0 chr13 22971401 22971609 -96773289 + MER30 DNA MER1_type 1 230 0 2191 110 0 0 chr13 22972355 22972666 -96772232 - AluSx SINE Alu 0 311 1 927 157 7 0 chr13 22972774 22972921 -96771977 + L1MB4 LINE L1 5333 5480 -694 1387 172 38 48 chr13 22972930 22973221 -96771677 + AluJb SINE Alu 1 288 -24 920 207 0 0 chr13 22973274 22973438 -96771460 + FRAM SINE Alu 8 171 -5 3736 169 35 1 chr13 22973456 22974112 -96770786 + L1MB4 LINE L1 5470 6152 -28 2536 69 0 0 chr13 22974112 22974415 -96770483 + AluY SINE Alu 1 303 -8 3736 169 35 1 chr13 22974415 22974446 -96770452 + L1MB4 LINE L1 6152 6180 0 802 233 0 0 chr13 22975882 22976045 -96768853 - FRAM SINE Alu -3 163 1 667 192 98 39 chr13 22977099 22977302 -96767596 - MIR SINE MIR -43 219 5 2294 115 0 3 chr13 22977935 22978240 -96766658 - AluSx SINE Alu -7 305 2 195 129 0 0 chr13 22978241 22978272 -96766626 + (T)n Simple_repeat Simple_repeat 1 31 0 233 236 115 54 chr13 22978312 22978460 -96766438 + L1ME4a LINE L1 5964 6120 -1 2057 96 67 3 chr13 22978838 22979120 -96765778 + AluSx SINE Alu 1 300 -12 718 281 19 27 chr13 22979653 22979916 -96764982 - MIR SINE MIR 0 262 2 234 0 0 0 chr13 22980486 22980512 -96764386 + (TA)n Simple_repeat Simple_repeat 2 27 0 1963 163 0 16 chr13 22980615 22980928 -96763970 - AluJo SINE Alu -4 308 1 1963 103 59 7 chr13 22981638 22981953 -96762945 + AluSq SINE Alu 1 313 0 512 221 27 40 chr13 22982270 22982419 -96762479 + MLT1H LTR MaLR 22 168 -381 2272 103 3 0 chr13 22982506 22982806 -96762092 + AluSx SINE Alu 12 312 0 252 184 447 0 chr13 22982857 22982960 -96761938 + HAL1 LINE L1 1290 1438 -1069 771 246 111 47 chr13 22982980 22982993 -96761905 + HAL1 LINE L1 2075 2086 -421 1608 184 16 44 chr13 22982993 22983115 -96761783 + AluJb SINE Alu 1 125 -187 2585 63 0 0 chr13 22983115 22983414 -96761484 - AluY SINE Alu -12 299 1 1608 184 16 44 chr13 22983414 22983611 -96761287 + AluJb SINE Alu 125 311 -1 771 246 111 47 chr13 22983611 22984004 -96760894 + HAL1 LINE L1 2086 2507 0 294 29 0 0 chr13 22984538 22984573 -96760325 + (CA)n Simple_repeat Simple_repeat 2 36 0 388 286 37 37 chr13 22984576 22984737 -96760161 + L1ME4a LINE L1 5941 6101 -20 1402 202 80 3 chr13 22985685 22985972 -96758926 - AluJb SINE Alu -3 309 1 339 252 310 7 chr13 22986368 22986523 -96758375 + L1MCc LINE L1 13 214 -6209 2399 255 108 65 chr13 22986536 22987714 -96757184 + L1MCc LINE L1 303 1531 -4892 2088 245 80 50 chr13 22987730 22988521 -96756377 + L1MCc LINE L1 1751 2581 -4541 10122 119 41 0 chr13 22988521 22990790 -96754108 + L1PA10 LINE L1 3859 6167 -1 2088 245 80 50 chr13 22990790 22991007 -96753891 + L1MCc LINE L1 2581 2790 -4332 411 206 57 4 chr13 22991007 22991153 -96753745 + MER3 DNA MER1_type 1 203 -6 1963 151 14 0 chr13 22991194 22991486 -96753412 - AluJb SINE Alu -16 296 1 2156 120 10 16 chr13 22991518 22991826 -96753072 + AluSx SINE Alu 1 306 -6 709 229 47 17 chr13 22991827 22992063 -96752835 + L1MCc LINE L1 2825 3067 -4055 894 206 0 0 chr13 22992445 22992605 -96752293 - FRAM SINE Alu -5 161 2 2355 106 3 0 chr13 22993406 22993709 -96751189 - AluSq SINE Alu -9 304 1 601 177 77 23 chr13 22994484 22994614 -96750284 - FLAM_C SINE Alu -5 138 2 459 273 62 24 chr13 22996837 22997046 -96747852 - MIR SINE MIR -38 224 8 266 210 0 32 chr13 22997049 22997111 -96747787 + tRNA-Gln-CAG tRNA tRNA 5 64 -11 249 322 74 0 chr13 22997128 22997249 -96747649 + MIR SINE MIR 110 239 -23 186 231 93 46 chr13 22997642 22997750 -96747148 + L2 LINE L2 1429 1541 -1773 1549 132 30 117 chr13 22997897 22998230 -96746668 - AluJb SINE Alu -8 304 1 196 241 0 0 chr13 22998321 22998375 -96746523 + MIR SINE MIR 204 257 -5 823 278 304 5 chr13 22998528 22999331 -96745567 + L2 LINE L2 1587 2629 -685 746 264 104 13 chr13 22999403 22999721 -96745177 + LTR16A LTR ERVL 104 450 0 1093 271 59 23 chr13 22999745 23000366 -96744532 + L2 LINE L2 2668 3308 -5 1798 176 0 7 chr13 23000797 23001092 -96743806 - AluJb SINE Alu -19 293 1 762 159 0 23 chr13 23001138 23001270 -96743628 - FLAM_A SINE Alu 0 142 14 194 313 150 7 chr13 23001877 23002024 -96742874 - MIR SINE MIR -74 188 21 1500 172 84 4 chr13 23002203 23002476 -96742422 + AluJo SINE Alu 1 295 -17 1933 156 10 3 chr13 23003444 23003739 -96741159 - AluJo SINE Alu -15 297 1 2413 82 117 107 chr13 23004434 23005185 -96739713 + pTR5 LTR ERV1 13 2435 -3 8539 112 18 4 chr13 23005185 23006415 -96738483 + Tigger1 DNA MER2_type 232 1478 -940 2440 94 3 0 chr13 23006416 23006724 -96738174 + AluSq SINE Alu 1 309 -4 595 194 56 76 chr13 23006742 23006886 -96738012 + FRAM SINE Alu 20 160 -16 6227 119 18 8 chr13 23006886 23007824 -96737074 + Tigger1 DNA MER2_type 1471 2418 0 384 315 40 0 chr13 23007864 23008013 -96736885 - L1ME3A LINE L1 -310 5860 5706 1486 201 3 43 chr13 23008014 23008210 -96736688 - AluJo SINE Alu -2 310 131 2811 20 0 0 chr13 23008210 23008515 -96736383 + AluYb8 SINE Alu 1 305 -13 1486 201 3 43 chr13 23008515 23008641 -96736257 - AluJo SINE Alu -181 131 1 2106 125 0 3 chr13 23008643 23008932 -96735966 - AluSx SINE Alu -24 288 1 336 245 8 12 chr13 23008940 23009058 -96735840 - L1ME3A LINE L1 -803 5343 5245 293 280 102 25 chr13 23009058 23009176 -96735722 + MIR SINE MIR 48 174 -88 1695 155 4 25 chr13 23009199 23009477 -96735421 - AluJo SINE Alu -39 273 2 244 257 64 36 chr13 23010036 23010176 -96734722 - L1ME3A LINE L1 -1081 5065 4922 306 258 120 60 chr13 23010281 23010448 -96734450 - L1ME3A LINE L1 -1421 4725 4549 22 56 0 19 chr13 23010839 23010871 -96734027 + AT_rich Low_complexity Low_complexity 1 33 -20 791 186 0 0 chr13 23010871 23010989 -96733909 - FLAM_C SINE Alu -15 118 1 22 56 0 19 chr13 23010989 23011010 -96733888 + AT_rich Low_complexity Low_complexity 33 53 0 307 297 38 38 chr13 23011370 23011609 -96733289 + L1ME4a LINE L1 5714 5952 -169 2031 115 0 33 chr13 23011675 23011979 -96732919 + AluSx SINE Alu 1 294 -18 2288 92 7 0 chr13 23011985 23012280 -96732618 + AluSc SINE Alu 1 297 -12 221 186 0 0 chr13 23012326 23012369 -96732529 - L2 LINE L2 -248 3065 3023 470 279 114 0 chr13 23012682 23012822 -96732076 - MER63 DNA MER1_type -276 786 5 447 148 70 120 chr13 23012865 23013007 -96731891 + L1ME4a LINE L1 5985 6119 -2 2140 122 0 0 chr13 23013372 23013659 -96731239 - AluSx SINE Alu -25 287 1 3220 177 71 38 chr13 23013665 23014333 -96730565 - L1MB5 LINE L1 0 6174 5480 2378 78 3 3 chr13 23014333 23014641 -96730257 + AluY SINE Alu 1 308 -3 3220 177 71 38 chr13 23014641 23014680 -96730218 - L1MB5 LINE L1 -694 5480 5444 447 216 85 65 chr13 23014830 23014983 -96729915 + MER63A DNA MER1_type 53 208 -2 21 0 0 0 chr13 23015416 23015437 -96729461 + AT_rich Low_complexity Low_complexity 1 21 0 737 185 23 0 chr13 23015946 23016076 -96728822 - FRAM SINE Alu -8 168 36 2203 112 10 3 chr13 23016128 23016424 -96728474 - AluSq SINE Alu -15 298 1 427 300 206 26 chr13 23016730 23017157 -96727741 + MLT1L LTR MaLR 106 609 -6 1679 174 14 3 chr13 23019204 23019498 -96725400 - AluJo SINE Alu -15 297 1 2011 135 22 19 chr13 23019865 23020176 -96724722 - AluSx SINE Alu 0 312 1 2349 99 0 0 chr13 23021748 23022050 -96722848 + AluSg SINE Alu 1 302 -8 225 268 98 62 chr13 23022334 23022446 -96722452 + L2 LINE L2 3150 3265 -7 1883 176 32 26 chr13 23022638 23023018 -96721880 + MLT1B LTR MaLR 1 382 -8 449 168 74 60 chr13 23023306 23023455 -96721443 - L1ME4a LINE L1 -9 6112 5962 650 170 10 0 chr13 23023612 23023712 -96721186 - FLAM_A SINE Alu -22 120 20 845 132 47 23 chr13 23024024 23024153 -96720745 + AluJo SINE Alu 3 134 -178 197 278 56 0 chr13 23024736 23024790 -96720108 + MIR3 SINE MIR 100 156 -52 21 36 0 0 chr13 23025044 23025072 -96719826 + AT_rich Low_complexity Low_complexity 1 28 0 341 294 109 0 chr13 23027070 23027189 -96717709 - L1ME LINE L1 -379 5742 5611 678 183 104 0 chr13 23027220 23027335 -96717563 - FLAM_C SINE Alu -13 130 4 29 0 0 0 chr13 23027336 23027365 -96717533 + AT_rich Low_complexity Low_complexity 1 29 0 276 266 0 0 chr13 23028058 23028122 -96716776 + MIR3 SINE MIR 138 201 -7 1980 106 84 3 chr13 23029310 23029594 -96715304 - AluSg SINE Alu -3 307 1 1965 141 7 3 chr13 23029709 23029999 -96714899 - AluSx SINE Alu -20 292 2 636 133 95 0 chr13 23030009 23030114 -96714784 - AluSg/x SINE Alu -12 297 183 2544 115 4 117 chr13 23030119 23030624 -96714274 - LTR46 LTR ERV1 -11 449 2 969 87 0 8 chr13 23030625 23030752 -96714146 - AluSg/x SINE Alu -103 207 82 3845 126 153 93 chr13 23031048 23032346 -96712552 - pTR5 LTR ERV1 0 2438 738 786 235 161 29 chr13 23033372 23033528 -96711370 - L1ME4a LINE L1 -16 6105 5971 2091 120 7 0 chr13 23033528 23033819 -96711079 - AluSq SINE Alu -20 293 1 786 235 161 29 chr13 23033819 23034108 -96710790 - L1ME4a LINE L1 -150 5971 5601 416 190 21 92 chr13 23034158 23034230 -96710668 + L1MB8 LINE L1 6044 6103 -75 1928 166 10 0 chr13 23034230 23034532 -96710366 + AluJb SINE Alu 1 305 -7 416 190 21 92 chr13 23034532 23034601 -96710297 + L1MB8 LINE L1 6103 6175 -3 480 239 89 111 chr13 23034661 23034705 -96710193 - L1ME4a LINE L1 -81 6040 5997 2232 100 10 3 chr13 23034705 23035005 -96709893 - AluSx SINE Alu -10 302 1 480 239 89 111 chr13 23035005 23035278 -96709620 - L1ME4a LINE L1 -124 5997 5734 2721 20 0 0 chr13 23035278 23035577 -96709321 + AluYa5 SINE Alu 1 299 -12 480 239 89 111 chr13 23035577 23035719 -96709179 - L1ME4a LINE L1 -387 5734 5590 344 67 0 100 chr13 23035733 23035793 -96709105 - L1MB3 LINE L1 -52 6131 6078 1553 156 45 24 chr13 23035804 23036093 -96708805 - AluJb SINE Alu -17 295 1 193 319 83 28 chr13 23038186 23038330 -96706568 - L2 LINE L2 -1016 2298 2147 987 211 12 40 chr13 23038455 23038777 -96706121 + L1M4 LINE L1 972 1284 -5258 * 5170 145 8 4 chr13 23038751 23039570 -96705328 + L1PA16 LINE L1 5833 6655 -9 2246 188 39 79 chr13 23039580 23039687 -96705211 + L1M4 LINE L1 1255 1365 -5281 1897 157 26 7 chr13 23039687 23039993 -96704905 + AluJo SINE Alu 1 312 0 2246 188 39 79 chr13 23039993 23040570 -96704328 + L1M4 LINE L1 1365 1912 -4734 1879 164 7 0 chr13 23040572 23040859 -96704039 + AluJb SINE Alu 1 289 -23 893 168 62 19 chr13 23041421 23041582 -96703316 - AluJo/FRAM SINE Alu -11 301 134 432 234 52 0 chr13 23041585 23041662 -96703236 - AluJ/FLAM SINE Alu -230 82 2 1740 132 4 0 chr13 23041728 23041970 -96702928 + AluSx SINE Alu 1 243 -69 1980 121 7 4 chr13 23042279 23042601 -96702297 + AluSx SINE Alu 1 323 0 714 198 8 0 chr13 23043145 23043266 -96701632 - FLAM_A SINE Alu -7 126 5 354 23 0 0 chr13 23043291 23043334 -96701564 + (TG)n Simple_repeat Simple_repeat 2 44 0 1927 152 3 7 chr13 23043344 23043647 -96701251 - AluSx SINE Alu -10 302 1 599 162 0 81 chr13 23043753 23043889 -96701009 - L1PA10 LINE L1 0 6168 6044 1526 163 22 18 chr13 23043892 23044169 -96700729 - LTR14B LTR ERVK -23 585 308 289 262 50 41 chr13 23047310 23047564 -96697334 + ALR/Alpha Satellite centromeric 1 256 0 2546 68 0 0 chr13 23047765 23048075 -96696823 + AluY SINE Alu 1 310 -1 28 0 0 47 chr13 23050055 23050082 -96694816 + AT_rich Low_complexity Low_complexity 1 27 -14 2242 100 0 3 chr13 23050082 23050371 -96694527 - AluY SINE Alu -23 288 1 28 0 0 47 chr13 23050371 23050386 -96694512 + AT_rich Low_complexity Low_complexity 27 41 0 2697 17 0 0 chr13 23053193 23053486 -96691412 - AluYa5 SINE Alu -18 293 1 3105 180 50 41 chr13 23053488 23054194 -96690704 + LTR8A LTR ERV1 16 727 0 486 308 35 0 chr13 23055060 23055232 -96689666 + L1PA16 LINE L1 2467 2644 -3502 * 941 165 88 0 chr13 23055231 23055413 -96689485 - L1PA15-16 LINE L1 -3932 2917 2720 9024 200 24 7 chr13 23055414 23058863 -96686035 + L1PA16 LINE L1 2658 6165 -1 258 32 0 0 chr13 23058900 23058931 -96685967 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 1575 259 25 0 chr13 23058953 23059359 -96685539 - L1M4 LINE L1 -940 5206 4791 257 132 0 38 chr13 23059943 23059996 -96684902 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 360 0 0 0 chr13 23060059 23060099 -96684799 + (TG)n Simple_repeat Simple_repeat 1 40 0 408 248 31 47 chr13 23060544 23060673 -96684225 + MLT1D LTR MaLR 343 469 -36 21 0 0 0 chr13 23061088 23061109 -96683789 + AT_rich Low_complexity Low_complexity 1 21 0 258 227 108 70 chr13 23061223 23061509 -96683389 - L1M4 LINE L1 -2866 3280 2984 1372 209 100 6 chr13 23061565 23061885 -96683013 + MLT1D LTR MaLR 156 505 0 218 207 244 0 chr13 23062576 23062658 -96682240 - MIR SINE MIR -71 137 36 396 0 0 0 chr13 23063602 23063646 -96681252 + (TG)n Simple_repeat Simple_repeat 2 45 0 253 290 139 23 chr13 23064278 23064426 -96680472 + MIR SINE MIR 5 142 -66 188 175 25 0 chr13 23065271 23065311 -96679587 + MIR SINE MIR 105 145 -63 1066 96 12 0 chr13 23067664 23067830 -96677068 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 3481 66 26 18 chr13 23067830 23068286 -96676612 - L1PA7 LINE L1 -13 6141 5682 227 351 115 20 chr13 23068995 23069343 -96675555 + L1ME LINE L1 5504 5884 -237 26 0 0 0 chr13 23069747 23069773 -96675125 + AT_rich Low_complexity Low_complexity 1 26 0 603 234 28 0 chr13 23070151 23070296 -96674602 - L1PA16 LINE L1 0 6166 6018 4133 154 16 25 chr13 23070528 23070720 -96674178 - L1MA3 LINE L1 0 6305 6113 189 0 0 0 chr13 23070720 23070741 -96674157 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2326 59 0 3 chr13 23070741 23071027 -96673871 - AluY SINE Alu -26 285 1 4133 154 16 25 chr13 23071027 23071597 -96673301 - L1MA3 LINE L1 -190 6115 5549 198 0 0 0 chr13 23072533 23072555 -96672343 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 767 188 0 0 chr13 23073319 23073436 -96671462 + FLAM_A SINE Alu 1 117 -16 43801 47 7 2 chr13 23073437 23079032 -96665866 - L1PA4 LINE L1 0 6155 590 180 0 0 0 chr13 23079032 23079052 -96665846 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 43801 47 7 2 chr13 23079052 23079571 -96665327 - L1PA4 LINE L1 -5565 590 8 8956 51 5 0 chr13 23079571 23080573 -96664325 - LTR13 LTR ERVK 0 1007 1 382 348 18 0 chr13 23082207 23082319 -96662579 - L2 LINE L2 -259 3054 2941 195 167 48 24 chr13 23084092 23084134 -96660764 + MER5A DNA MER1_type 43 85 -104 * 361 211 156 0 chr13 23084118 23084208 -96660690 - MER5A DNA MER1_type -77 112 9 5186 109 142 131 chr13 23084739 23086285 -96658613 - pTR5 LTR ERV1 0 2438 741 297 0 0 0 chr13 23087949 23087982 -96656916 + (TG)n Simple_repeat Simple_repeat 1 33 0 479 188 21 0 chr13 23088481 23088577 -96656321 - Charlie1 DNA MER1_type -45 2716 2619 986 201 25 0 chr13 23090043 23090247 -96654651 + AluJb SINE Alu 97 305 -7 1125 94 0 0 chr13 23090584 23090722 -96654176 + AluSq/x SINE Alu 1 138 -175 266 187 0 10 chr13 23090750 23090809 -96654089 - Alu SINE Alu -13 289 248 1620 184 24 3 chr13 23092273 23092567 -96652331 - AluJb SINE Alu -12 300 1 23 0 0 0 chr13 23093004 23093027 -96651871 + AT_rich Low_complexity Low_complexity 1 23 0 2075 65 11 8 chr13 23096131 23096391 -96648507 - AluSg1 SINE Alu -14 295 35 22 0 0 0 chr13 23096401 23096423 -96648475 + AT_rich Low_complexity Low_complexity 1 22 0 1094 88 0 0 chr13 23096423 23096570 -96648328 - AluY SINE Alu -8 303 157 588 306 95 6 chr13 23096607 23096966 -96647932 + L1M4 LINE L1 4549 4939 -1207 453 221 0 23 chr13 23096966 23097052 -96647846 + MER21B LTR ERV1 1 84 -779 207 0 0 0 chr13 23097244 23097267 -96647631 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2054 111 0 10 chr13 23097267 23097556 -96647342 - AluSx SINE Alu -26 286 1 948 185 83 0 chr13 23097784 23097989 -96646909 - MER99 DNA DNA -271 557 336 2159 103 0 30 chr13 23097990 23098291 -96646607 - AluSq SINE Alu -21 292 1 1116 130 36 36 chr13 23098606 23098798 -96646100 - AluJb SINE Alu -120 192 1 401 185 193 8 chr13 23098798 23098917 -96645981 - L1MB8 LINE L1 -269 5909 5769 5353 118 48 62 chr13 23098928 23099415 -96645483 - L1MA4A LINE L1 -1 6302 5810 180 0 0 0 chr13 23099415 23099435 -96645463 + (TA)n Simple_repeat Simple_repeat 2 21 0 5353 118 48 62 chr13 23099435 23099485 -96645413 - L1MA4A LINE L1 -493 5810 5761 2247 100 0 31 chr13 23099485 23099804 -96645094 - AluSg1 SINE Alu 0 309 1 5353 118 48 62 chr13 23099804 23100256 -96644642 - L1MA4A LINE L1 -542 5761 5304 230 56 28 0 chr13 23100256 23100292 -96644606 + (TATG)n Simple_repeat Simple_repeat 4 40 0 2043 119 11 3 chr13 23100292 23100577 -96644321 - AluSq SINE Alu -26 287 1 5387 146 36 4 chr13 23100577 23101668 -96643230 - L1 LINE L1 -3764 3084 1956 2041 151 3 0 chr13 23101668 23101972 -96642926 - AluSx SINE Alu -7 305 1 5387 146 36 4 chr13 23101972 23101997 -96642901 - L1 LINE L1 -4892 1956 1933 5902 107 20 31 chr13 23102241 23103157 -96641741 - L1PA15 LINE L1 -6 6159 5254 1382 115 0 21 chr13 23103169 23103361 -96641537 - AluSg SINE Alu -94 216 29 10271 150 22 17 chr13 23103361 23103836 -96641062 - L1PA15-16 LINE L1 -3489 3360 2889 561 30 0 0 chr13 23103836 23103903 -96640995 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 1867 157 4 0 chr13 23103903 23104177 -96640721 - AluSc SINE Alu -34 275 1 10271 150 22 17 chr13 23104177 23105745 -96639153 - L1PA15-16 LINE L1 -3959 2890 1305 2519 157 15 0 chr13 23105751 23106153 -96638745 - L1PA15-16 LINE L1 -6437 412 5 238 291 118 52 chr13 23106151 23106481 -96638417 - L1M4 LINE L1 -2316 3830 3479 * 654 156 0 0 chr13 23106492 23106588 -96638310 + AluSg/x SINE Alu 201 296 -13 622 194 119 12 chr13 23106935 23107095 -96637803 + MER96B DNA MER1_type? 3 179 -238 514 268 0 8 chr13 23107620 23107743 -96637155 - MER112 DNA MER1_type 0 260 139 545 246 24 53 chr13 23107827 23108039 -96636859 + MIR3 SINE MIR 13 208 0 1969 125 0 11 chr13 23108098 23108407 -96636491 + AluSx SINE Alu 1 292 -20 369 0 0 0 chr13 23109031 23109072 -96635826 + (TG)n Simple_repeat Simple_repeat 2 42 0 233 282 103 0 chr13 23109147 23109225 -96635673 - MIR SINE MIR -29 233 148 740 206 52 134 chr13 23109255 23109809 -96635089 - L1MC5 LINE L1 -48 7913 7405 429 225 117 0 chr13 23109809 23109920 -96634978 - MIR SINE MIR -42 220 97 216 0 0 0 chr13 23110209 23110233 -96634665 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 225 0 0 0 chr13 23111277 23111302 -96633596 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1919 123 0 0 chr13 23111305 23111582 -96633316 - AluSx SINE Alu -25 287 11 204 365 73 7 chr13 23113333 23113470 -96631428 + L3b LINE CR1 1116 1261 -322 1985 134 26 10 chr13 23113671 23113978 -96630920 - AluSx SINE Alu 0 312 1 636 310 16 5 chr13 23114723 23114910 -96629988 - MER5A DNA MER1_type 0 189 1 276 252 153 9 chr13 23115670 23115781 -96629117 + MIR SINE MIR 81 207 -55 671 163 16 16 chr13 23116102 23116225 -96628673 - AluJ SINE Alu 0 312 190 720 180 0 0 chr13 23116229 23116351 -96628547 - AluJ SINE Alu -179 133 12 2248 93 3 19 chr13 23116384 23116605 -96628293 - AluSp SINE Alu -5 308 92 5384 127 52 19 chr13 23116605 23117543 -96627355 + LTR5 LTR ERVK 1 969 0 2248 93 3 19 chr13 23117543 23117634 -96627264 - AluSp SINE Alu -221 92 1 2216 107 0 0 chr13 23118418 23118717 -96626181 + AluSc SINE Alu 1 299 -10 1478 190 17 3 chr13 23118769 23119058 -96625840 + AluSx SINE Alu 1 293 -19 353 45 0 0 chr13 23119075 23119119 -96625779 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 231 39 13 chr13 23119609 23119687 -96625211 + A-rich Low_complexity Low_complexity 4 83 0 902 107 0 0 chr13 23119757 23119878 -96625020 - FRAM SINE Alu -28 148 28 3141 181 51 7 chr13 23119878 23120470 -96624428 + MER54A LTR ERVL 284 901 0 854 58 117 0 chr13 23121927 23122047 -96622851 - MER85 DNA T2_type -2 137 4 208 206 32 0 chr13 23122623 23122686 -96622212 + (TA)n Simple_repeat Simple_repeat 1 65 0 1585 193 3 10 chr13 23123415 23123726 -96621172 - AluJb SINE Alu -3 309 1 13965 230 40 30 chr13 23124876 23125911 -96618987 - L1PA16 LINE L1 -9 7595 6572 2333 68 3 0 chr13 23125911 23126207 -96618691 + AluY SINE Alu 3 299 -12 13965 230 40 30 chr13 23126207 23127688 -96617210 - L1PA16 LINE L1 -1032 6572 5107 2113 105 0 20 chr13 23127688 23127994 -96616904 - AluY SINE Alu -11 300 1 13965 230 40 30 chr13 23127994 23129226 -96615672 - L1PA16 LINE L1 -2497 5107 3889 2123 97 0 3 chr13 23129226 23129514 -96615384 + AluY SINE Alu 3 289 -22 13965 230 40 30 chr13 23129514 23132690 -96612208 - L1PA16 LINE L1 -3715 3889 8 2130 94 0 16 chr13 23132866 23133174 -96611724 + AluY SINE Alu 3 305 -6 682 137 0 10 chr13 23133361 23133463 -96611435 - AluS SINE Alu -211 102 2 2323 94 0 0 chr13 23133623 23133931 -96610967 - AluSg SINE Alu -2 308 1 378 221 0 0 chr13 23136458 23136553 -96608345 + (TGGA)n Simple_repeat Simple_repeat 4 98 0 518 314 43 84 chr13 23136566 23136936 -96607962 + L2 LINE L2 2917 3271 -1 180 0 0 0 chr13 23140713 23140733 -96604165 + (A)n Simple_repeat Simple_repeat 1 20 0 195 180 213 0 chr13 23141509 23141570 -96603328 - MER5A DNA MER1_type -106 83 10 256 324 48 0 chr13 23141689 23141794 -96603104 - L2 LINE L2 -941 2373 2264 2066 110 0 0 chr13 23141986 23142276 -96602622 + AluSx SINE Alu 21 310 -2 295 311 57 0 chr13 23143523 23143648 -96601250 + MIR SINE MIR 20 150 -63 206 116 47 23 chr13 23144404 23144425 -96600473 + (TTCTG)n Simple_repeat Simple_repeat 2 21 -24 1416 172 15 78 chr13 23144425 23144757 -96600141 - AluJo SINE Alu -1 311 1 206 116 47 23 chr13 23144757 23144778 -96600120 + (TTCTG)n Simple_repeat Simple_repeat 21 45 0 1387 96 0 5 chr13 23145065 23145253 -96599645 - AluY SINE Alu -124 187 1 2239 148 5 8 chr13 23145253 23145631 -96599267 - L1MA4 LINE L1 -246 6054 5678 620 184 15 22 chr13 23145684 23145820 -96599078 + Ricksha DNA DNA 1 135 -1911 2207 177 33 5 chr13 23145872 23146239 -96598659 + Ricksha DNA DNA 307 683 -1363 259 258 103 21 chr13 23146166 23146263 -96598635 + MLT2D LTR ERVL 321 425 -128 * 2096 138 41 141 chr13 23146262 23146524 -96598374 + Ricksha DNA DNA 2641 2928 -323 2032 113 10 3 chr13 23146524 23146825 -96598073 - AluSq SINE Alu -10 303 1 2096 138 41 141 chr13 23146825 23146908 -96597990 + Ricksha DNA DNA 2928 3018 -233 2315 66 0 3 chr13 23146908 23147210 -96597688 - AluY SINE Alu -10 301 1 2096 138 41 141 chr13 23147210 23147401 -96597497 + Ricksha DNA DNA 3018 3124 -127 4153 128 105 54 chr13 23147431 23148213 -96596685 - LTR12 LTR ERV1 0 826 5 1609 208 16 43 chr13 23148246 23148684 -96596214 + pTR5 LTR ERV1 802 1227 -1211 4797 111 25 98 chr13 23148712 23149599 -96595299 + LTR12 LTR ERV1 5 826 0 384 220 189 8 chr13 23150267 23150399 -96594499 + L2 LINE L2 3115 3270 -43 1453 148 38 6 chr13 23150404 23150840 -96594058 + LTR54 LTR ERV1 1 510 0 243 173 0 0 chr13 23150871 23150923 -96593975 + GA-rich Low_complexity Low_complexity 2 53 0 407 320 47 6 chr13 23151027 23151198 -96593700 + MIR SINE MIR 16 193 -63 360 353 59 13 chr13 23151838 23152076 -96592822 + MIR SINE MIR 6 254 -8 476 251 134 27 chr13 23153179 23153402 -96591496 + MLT1J1 LTR MaLR 189 435 -11 1338 188 112 65 chr13 23153528 23153958 -96590940 + LTR7 LTR ERV1 1 450 0 2252 99 0 3 chr13 23154083 23154397 -96590501 - AluSq SINE Alu 0 313 1 293 283 41 69 chr13 23155203 23155348 -96589550 - MIR3 SINE MIR -28 180 40 237 266 31 16 chr13 23155453 23155517 -96589381 + MIR SINE MIR 89 153 -109 3937 113 4 11 chr13 23156151 23156478 -96588420 + MER41A LTR ERV1 1 324 -230 2182 107 0 0 chr13 23156478 23156776 -96588122 + AluSg SINE Alu 1 298 -12 3937 113 4 11 chr13 23156776 23157006 -96587892 + MER41A LTR ERV1 324 554 0 548 254 55 55 chr13 23157085 23157286 -96587612 + MIR SINE MIR 48 248 -14 297 252 179 0 chr13 23157449 23157572 -96587326 - MIR SINE MIR -71 191 47 685 272 44 44 chr13 23157750 23158000 -96586898 - MIR SINE MIR -12 250 1 420 227 144 57 chr13 23158238 23158432 -96586466 + L1MEd LINE L1 3 213 -5906 243 265 108 12 chr13 23158603 23158686 -96586212 + L1MEd LINE L1 464 554 -5565 801 183 0 21 chr13 23158688 23158830 -96586068 - FLAM_C SINE Alu -3 140 2 366 266 9 0 chr13 23158919 23159028 -96585870 + L1MEd LINE L1 671 780 -5339 336 265 204 6 chr13 23159062 23159224 -96585674 + L1MEd LINE L1 1064 1257 -4862 2313 71 0 37 chr13 23159243 23159566 -96585332 - AluY SINE Alu 0 311 1 1892 135 30 0 chr13 23159731 23160027 -96584871 + AluSq SINE Alu 9 313 0 780 149 0 0 chr13 23160058 23160179 -96584719 + FLAM_C SINE Alu 10 130 -13 1778 173 0 3 chr13 23160860 23161166 -96583732 - AluJb SINE Alu -7 305 1 805 127 16 0 chr13 23161265 23161391 -96583507 - FLAM_C SINE Alu -4 139 12 2072 34 52 4 chr13 23162334 23162647 -96582251 + AluY SINE Alu 1 326 0 1532 98 9 0 chr13 23163637 23163851 -96581047 - MER4E LTR ERV1 0 766 551 313 44 0 22 chr13 23163846 23163891 -96581007 - MER4E LTR ERV1 -735 44 1 * 1548 191 65 9 chr13 23164475 23164800 -96580098 - MER61A LTR ERV1 0 343 1 2443 61 3 13 chr13 23164890 23165203 -96579695 + AluY SINE Alu 1 310 -1 1900 108 14 21 chr13 23165331 23165617 -96579281 - MER61A-int LTR ERV1 -108 6650 6367 8673 126 55 38 chr13 23165717 23165896 -96579002 - MER61A-int LTR ERV1 -761 5997 5823 2088 122 3 0 chr13 23165896 23166192 -96578706 + AluSx SINE Alu 1 297 -15 8673 126 55 38 chr13 23166192 23167531 -96577367 - MER61A-int LTR ERV1 -935 5823 4452 3639 128 44 9 chr13 23167533 23168096 -96576802 - MER61A-int LTR ERV1 -2673 4085 3503 4133 117 73 22 chr13 23168133 23168938 -96575960 - MER61A-int LTR ERV1 -3666 3092 2247 3920 95 4 2 chr13 23168938 23169456 -96575442 + MER41A LTR ERV1 1 519 -35 1585 146 0 24 chr13 23169456 23169710 -96575188 - AluJb SINE Alu -58 254 7 403 224 0 12 chr13 23169717 23169802 -96575096 - L1ME2 LINE L1 -62 6102 6019 565 158 20 20 chr13 23169910 23170062 -96574836 - L1M4 LINE L1 -3183 2963 2812 309 275 180 35 chr13 23170166 23170533 -96574365 - L1M4 LINE L1 -2002 4144 3725 1764 131 6 70 chr13 23170684 23170997 -96573901 - AluJb SINE Alu -18 294 2 6929 65 33 0 chr13 23171041 23171909 -96572989 + MER11D LTR ERVK 1 897 0 509 309 16 3 chr13 23172484 23172676 -96572222 - L1MC4a LINE L1 -332 5910 5713 243 0 0 0 chr13 23173222 23173249 -96571649 + (ATG)n Simple_repeat Simple_repeat 1 27 0 2119 98 16 10 chr13 23173478 23173783 -96571115 + AluSx SINE Alu 1 307 -5 234 210 12 25 chr13 23174593 23174674 -96570224 + CT-rich Low_complexity Low_complexity 1 80 0 294 208 73 10 chr13 23174939 23175035 -96569863 - L1ME4a LINE L1 0 6121 6020 524 265 57 29 chr13 23175108 23175353 -96569545 + MLT1J1 LTR MaLR 45 296 -150 2070 124 3 13 chr13 23175427 23175741 -96569157 + AluSx SINE Alu 1 311 -1 800 163 0 0 chr13 23177979 23178102 -96566796 - FLAM_C SINE Alu -8 125 3 1324 168 71 4 chr13 23178814 23179082 -96565816 + AluJo SINE Alu 19 304 -8 625 281 46 12 chr13 23179105 23179433 -96565465 + L1M4 LINE L1 2211 2549 -3597 2495 203 22 42 chr13 23179521 23180112 -96564786 + MER119 DNA MER1_type 5 583 0 641 119 8 42 chr13 23180161 23180279 -96564619 + FLAM_C SINE Alu 30 143 0 1045 139 11 37 chr13 23180293 23180480 -96564418 + AluJb SINE Alu 127 308 -4 400 243 64 125 chr13 23180485 23180537 -96564361 + L1M4 LINE L1 2678 2732 -3414 2320 63 37 0 chr13 23180537 23180837 -96564061 + AluY SINE Alu 1 311 0 400 243 64 125 chr13 23180837 23181080 -96563818 + L1M4 LINE L1 2732 2955 -3191 2217 141 60 0 chr13 23181082 23181464 -96563434 - L1PA16 LINE L1 0 6166 5762 314 109 0 0 chr13 23181474 23181520 -96563378 + L1P4 LINE L1 5755 5800 -366 423 245 78 91 chr13 23181531 23181800 -96563098 + L1M4 LINE L1 2945 3205 -2941 1890 155 0 0 chr13 23181800 23182110 -96562788 + AluSx SINE Alu 1 310 -2 423 245 78 91 chr13 23182110 23182354 -96562544 + L1M4 LINE L1 3205 3451 -2695 3508 179 42 23 chr13 23182404 23183140 -96561758 + L1MC3 LINE L1 7015 7764 -21 23 54 0 0 chr13 23183247 23183284 -96561614 + AT_rich Low_complexity Low_complexity 1 37 0 1833 152 0 3 chr13 23183294 23183591 -96561307 + AluJb SINE Alu 1 296 -16 2178 78 0 3 chr13 23183593 23183941 -96560957 + AluY SINE Alu 1 347 0 724 285 81 4 chr13 23183941 23184201 -96560697 + L1M4 LINE L1 3950 4229 -1917 22 35 0 0 chr13 23185075 23185104 -96559794 + AT_rich Low_complexity Low_complexity 1 29 0 2862 152 30 4 chr13 23185420 23185921 -96558977 - L1MA4 LINE L1 -11 6289 5776 308 234 16 0 chr13 23185952 23186016 -96558882 - L1MC4 LINE L1 -1339 6703 6639 2517 30 0 7 chr13 23186019 23186321 -96558577 - AluY SINE Alu -11 300 1 3270 125 29 5 chr13 23186321 23186959 -96557939 - L1M2 LINE L1 -514 5786 5127 342 297 25 34 chr13 23187584 23187702 -96557196 + MIR SINE MIR 24 140 -68 1061 257 86 24 chr13 23187717 23188091 -96556807 - MLT2C1 LTR ERVL 0 397 1 401 327 47 45 chr13 23188241 23188666 -96556232 - L1ME4a LINE L1 -173 5948 5523 875 172 105 62 chr13 23188797 23188924 -96555974 + Tigger3(Golem) DNA MER2_type 1 142 -2887 2424 54 3 0 chr13 23188924 23189220 -96555678 + AluY SINE Alu 2 298 -13 875 172 105 62 chr13 23189220 23189301 -96555597 + Tigger3(Golem) DNA MER2_type 142 218 -2811 * 3747 135 66 2 chr13 23189276 23189416 -96555482 + Tigger3(Golem) DNA MER2_type 2354 2484 -545 575 242 0 8 chr13 23189416 23189540 -96555358 + FLAM_A SINE Alu 1 123 -10 3747 135 66 2 chr13 23189540 23190034 -96554864 + Tigger3(Golem) DNA MER2_type 2484 3029 0 1685 127 4 12 chr13 23190216 23190475 -96554423 - Tigger2 DNA MER2_type 0 2718 2462 4131 142 53 30 chr13 23190512 23190815 -96554083 - Tigger2 DNA MER2_type -1946 772 477 2373 51 3 0 chr13 23190815 23191107 -96553791 - AluY SINE Alu -18 293 1 4131 142 53 30 chr13 23191107 23191558 -96553340 - Tigger2 DNA MER2_type -2241 477 1 1651 180 81 33 chr13 23192753 23193148 -96551750 - MLT2D LTR ERVL 0 414 1 2169 107 0 0 chr13 23194349 23194647 -96550251 + AluSg SINE Alu 1 298 -12 357 225 179 26 chr13 23195228 23195379 -96549519 - MER5B DNA MER1_type -4 174 1 199 257 40 99 chr13 23195401 23195502 -96549396 - MIR SINE MIR -84 124 30 245 304 26 61 chr13 23195617 23195732 -96549166 + L3b LINE CR1 1327 1437 -146 256 228 0 0 chr13 23196689 23196746 -96548152 + MER53 DNA DNA 1 57 -132 699 141 141 0 chr13 23196746 23196867 -96548031 + FRAM SINE Alu 23 160 -16 304 206 0 14 chr13 23196868 23196941 -96547957 - MER53 DNA DNA -37 152 81 2144 94 3 16 chr13 23198296 23198604 -96546294 + AluSq SINE Alu 2 305 -8 2253 78 0 0 chr13 23199828 23200121 -96544777 - AluSc SINE Alu -14 295 3 879 238 17 74 chr13 23200290 23200589 -96544309 + L1MA9 LINE L1 5987 6268 -44 1460 148 72 14 chr13 23202285 23202562 -96542336 + AluJb SINE Alu 5 297 -15 216 175 70 35 chr13 23202972 23203029 -96541869 + L3 LINE CR1 1519 1577 0 2388 54 0 19 chr13 23203504 23203821 -96541077 - AluY SINE Alu 0 311 1 534 188 10 0 chr13 23204440 23204541 -96540357 - MLT1G LTR MaLR 0 590 489 873 57 63 10 chr13 23206626 23206964 -96537934 + (TG)n Simple_repeat Simple_repeat 1 537 0 702 58 64 23 chr13 23206991 23207163 -96537735 + (TG)n Simple_repeat Simple_repeat 2 180 0 213 279 141 55 chr13 23207451 23207622 -96537276 + MIR3 SINE MIR 13 173 -35 2272 81 0 3 chr13 23207706 23208004 -96536894 - AluSq SINE Alu -16 297 1 361 227 160 34 chr13 23208219 23208338 -96536560 - MER63 DNA MER1_type -302 760 1 227 273 64 27 chr13 23208428 23208538 -96536360 + MIR SINE MIR 120 233 -29 297 156 180 3 chr13 23209333 23209457 -96535441 + MER20 DNA MER1_type 30 219 0 2386 96 0 3 chr13 23210903 23211204 -96533694 + AluSp SINE Alu 1 300 -13 2518 65 3 0 chr13 23211205 23211540 -96533358 + AluY SINE Alu 1 336 0 2193 102 3 14 chr13 23211925 23212220 -96532678 + AluSx SINE Alu 1 292 -20 565 262 83 35 chr13 23212654 23212883 -96532015 + MIR SINE MIR 7 246 -16 634 314 31 14 chr13 23213600 23213893 -96531005 + L1MB7 LINE L1 5863 6160 -24 218 103 0 26 chr13 23218062 23218101 -96526797 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 233 373 105 19 chr13 23218266 23218580 -96526318 + L2 LINE L2 2222 2562 -752 246 32 0 0 chr13 23219597 23219628 -96525270 + (CA)n Simple_repeat Simple_repeat 1 31 0 2282 110 3 7 chr13 23220335 23220643 -96524255 - AluSq SINE Alu -6 307 1 189 279 49 0 chr13 23220875 23220936 -96523962 - MIR SINE MIR -43 219 156 2966 3 0 19 chr13 23221159 23221481 -96523417 + AluYb8 SINE Alu 1 316 -2 926 213 30 53 chr13 23221791 23222054 -96522844 + MIR SINE MIR 5 261 -1 2117 137 0 19 chr13 23222086 23222393 -96522505 + AluJo SINE Alu 1 301 -11 180 254 0 34 chr13 23222702 23222761 -96522137 + MIR SINE MIR 206 262 0 246 160 40 0 chr13 23222776 23222826 -96522072 - L1ME LINE L1 -452 5669 5618 280 279 27 82 chr13 23224987 23225134 -96519764 + L2 LINE L2 2925 3063 -209 2449 95 0 9 chr13 23225950 23226266 -96518632 + AluSq SINE Alu 1 313 0 199 208 19 19 chr13 23226945 23226998 -96517900 - L2 LINE L2 0 3313 3261 349 282 70 14 chr13 23227392 23227534 -96517364 - L2 LINE L2 0 3313 3164 2090 112 7 0 chr13 23227969 23228273 -96516625 - AluSx SINE Alu 0 308 3 706 65 56 28 chr13 23228291 23228399 -96516499 - HY1 scRNA scRNA -1 111 1 1088 156 13 69 chr13 23228399 23228622 -96516276 - AluJo SINE Alu -16 296 85 519 126 58 0 chr13 23228626 23228713 -96516185 - FRAM SINE Alu -59 117 26 1922 135 20 24 chr13 23228734 23229030 -96515868 - AluSx SINE Alu -17 295 1 219 36 0 0 chr13 23229727 23229755 -96515143 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 211 318 15 0 chr13 23230112 23230178 -96514720 - L2 LINE L2 -527 2787 2721 2117 134 3 13 chr13 23230398 23230705 -96514193 - AluJb SINE Alu -8 304 1 295 313 0 0 chr13 23232279 23232359 -96512539 - MER5A DNA MER1_type -100 89 10 1716 141 111 4 chr13 23232418 23232680 -96512218 - AluSx SINE Alu -19 293 4 227 35 0 0 chr13 23233298 23233327 -96511571 + MER5A DNA MER1_type 41 69 -120 614 200 21 14 chr13 23233331 23233471 -96511427 + FLAM_A SINE Alu 2 142 0 1057 118 11 6 chr13 23233536 23233714 -96511184 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 409 218 11 0 chr13 23233716 23233803 -96511095 + MER5A DNA MER1_type 64 151 -38 451 269 69 40 chr13 23233824 23233999 -96510899 - MER97b DNA MER1_type? -859 194 15 856 158 0 0 chr13 23234855 23234982 -96509916 + FLAM_C SINE Alu 1 127 -16 309 282 77 46 chr13 23238487 23238682 -96506216 - L1ME4a LINE L1 -2 6119 5919 333 254 91 27 chr13 23238870 23238980 -96505918 - L1ME4a LINE L1 -474 5647 5531 2245 120 0 0 chr13 23239258 23239557 -96505341 - AluSx SINE Alu -13 299 1 918 129 0 0 chr13 23239781 23239905 -96504993 + FLAM_C SINE Alu 1 124 -19 227 337 36 0 chr13 23239914 23239997 -96504901 - L2 LINE L2 -561 2753 2668 2357 89 7 0 chr13 23240368 23240671 -96504227 + AluY SINE Alu 1 305 -6 181 353 173 0 chr13 23240680 23240819 -96504079 - MIR SINE MIR -3 259 97 861 232 150 15 chr13 23240880 23241220 -96503678 + LTR37A LTR ERV1 3 388 -38 180 125 0 0 chr13 23241654 23241686 -96503212 + (T)n Simple_repeat Simple_repeat 1 32 0 1869 136 48 42 chr13 23241759 23242069 -96502829 - AluJb SINE Alu 0 312 1 1518 187 63 20 chr13 23242642 23242989 -96501909 + L1PA16 LINE L1 5803 6164 -2 216 229 133 19 chr13 23243884 23243989 -96500909 + L2 LINE L2 3150 3266 -6 1898 174 3 3 chr13 23244085 23244389 -96500509 + AluJo SINE Alu 3 306 -6 201 74 0 0 chr13 23244391 23244418 -96500480 + (GGA)n Simple_repeat Simple_repeat 3 29 0 583 48 24 0 chr13 23244418 23244501 -96500397 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 219 297 0 0 chr13 23244834 23244898 -96500000 + L2 LINE L2 1912 1975 -1339 628 250 48 18 chr13 23245065 23245293 -96499605 - MER90 LTR ERV1 0 575 341 1054 153 222 106 chr13 23245680 23245844 -96499054 - LTR52 LTR ERVL -5 416 273 2370 76 0 10 chr13 23245844 23246134 -96498764 + AluY SINE Alu 1 287 -24 1054 153 222 106 chr13 23246134 23246329 -96498569 - LTR52 LTR ERVL -148 273 15 2016 155 0 7 chr13 23246329 23246632 -96498266 + AluSx SINE Alu 1 301 -11 437 211 0 11 chr13 23246781 23246871 -96498027 - MIR SINE MIR -22 240 152 1731 145 25 22 chr13 23246882 23246940 -96497958 - MER2 DNA MER2_type -25 320 264 2118 123 10 0 chr13 23246940 23247233 -96497665 + AluSx SINE Alu 1 296 -16 1731 145 25 22 chr13 23247233 23247492 -96497406 - MER2 DNA MER2_type -81 264 2 520 303 26 33 chr13 23247493 23247645 -96497253 - MIR SINE MIR -111 151 1 246 278 157 28 chr13 23248316 23248424 -96496474 - MIR3 SINE MIR -36 172 66 506 151 21 11 chr13 23248618 23248711 -96496187 - MIR SINE MIR -98 164 71 1185 165 54 19 chr13 23248846 23249106 -96495792 - LTR54 LTR ERV1 0 510 242 1934 144 7 3 chr13 23249122 23249421 -96495477 - AluSq SINE Alu -13 300 1 182 305 53 21 chr13 23250279 23250374 -96494524 - MER5A DNA MER1_type -67 122 25 628 157 0 0 chr13 23250693 23250808 -96494090 - FLAM_A SINE Alu 0 142 28 1849 113 16 12 chr13 23251342 23251599 -96493299 + AluSc SINE Alu 51 308 -1 246 276 61 31 chr13 23252016 23252114 -96492784 + MLT1G1 LTR MaLR 1 101 -494 2165 152 66 76 chr13 23252337 23252577 -96492321 + LTR54 LTR ERV1 1 242 -268 2376 93 3 3 chr13 23252577 23252878 -96492020 + AluSx SINE Alu 1 301 -11 2165 152 66 76 chr13 23252878 23253152 -96491746 + LTR54 LTR ERV1 242 510 0 506 151 21 11 chr13 23253287 23253380 -96491518 + MIR SINE MIR 71 164 -98 196 130 43 0 chr13 23255908 23255954 -96488944 + GA-rich Low_complexity Low_complexity 2 49 0 205 103 0 0 chr13 23261917 23261946 -96482952 + MIR SINE MIR 84 112 -96 2541 51 0 0 chr13 23261946 23262240 -96482658 - AluY SINE Alu -17 294 1 409 131 48 7 chr13 23262988 23263133 -96481765 + (TA)n Simple_repeat Simple_repeat 1 151 0 40 0 0 0 chr13 23263147 23263187 -96481711 + AT_rich Low_complexity Low_complexity 1 40 0 1972 110 3 28 chr13 23263394 23263708 -96481190 - AluSq SINE Alu 0 309 3 2542 59 0 3 chr13 23263845 23264148 -96480750 + AluY SINE Alu 1 302 -9 323 190 36 51 chr13 23264627 23264820 -96480078 + L1ME2 LINE L1 5312 5495 -685 890 240 61 51 chr13 23264887 23265199 -96479699 + L1MEd LINE L1 401 715 -5404 * 939 247 29 14 chr13 23265192 23265467 -96479431 + L1MEd LINE L1 979 1257 -4862 315 291 56 53 chr13 23265512 23265832 -96479066 + L1MEd LINE L1 1336 1656 -4473 272 344 176 0 chr13 23265974 23266099 -96478799 - L2 LINE L2 -299 2973 2827 1573 117 46 4 chr13 23266099 23266338 -96478560 + L1PA13 LINE L1 5321 5569 -596 4958 56 13 20 chr13 23266338 23267370 -96477528 - MER11A LTR ERVK 0 1266 6 4140 86 59 3 chr13 23267370 23267942 -96476956 + L1PA13 LINE L1 5560 6163 0 987 241 87 78 chr13 23267942 23268231 -96476667 + L1ME2 LINE L1 5737 6022 -142 2349 79 0 0 chr13 23268231 23268522 -96476376 - AluY SINE Alu -20 291 1 987 241 87 78 chr13 23268522 23268539 -96476359 + L1ME2 LINE L1 6022 6037 -127 1800 144 0 0 chr13 23268539 23268789 -96476109 - AluSq SINE Alu -63 250 1 987 241 87 78 chr13 23268789 23268905 -96475993 + L1ME2 LINE L1 6037 6164 0 373 181 150 8 chr13 23268918 23269051 -96475847 + L1MC5 LINE L1 7773 7924 -37 357 248 0 29 chr13 23269163 23269268 -96475630 + L1ME3A LINE L1 6068 6169 -1 764 219 6 37 chr13 23269738 23269902 -96474996 - FRAM SINE Alu -3 163 5 678 191 28 14 chr13 23269910 23270051 -96474847 - MER5B DNA MER1_type -35 143 1 1928 115 0 0 chr13 23270316 23270569 -96474329 + AluSg SINE Alu 46 298 -12 2272 79 0 36 chr13 23270631 23270936 -96473962 + AluY SINE Alu 1 294 -17 209 292 9 53 chr13 23271204 23271317 -96473581 + MIR SINE MIR 4 111 -97 1861 242 120 2 chr13 23271359 23271843 -96473055 + MLT1H LTR MaLR 9 549 0 1001 231 99 0 chr13 23272432 23272714 -96472184 + MER33 DNA MER1_type 1 310 -14 723 19 88 6 chr13 23272835 23272994 -96471904 + (TA)n Simple_repeat Simple_repeat 1 172 0 22 35 0 0 chr13 23273938 23273967 -96470931 + GC_rich Low_complexity Low_complexity 1 29 0 2293 95 0 25 chr13 23275622 23275938 -96468960 - AluSx SINE Alu -4 308 1 1136 142 6 0 chr13 23276177 23276353 -96468545 - AluSg/x SINE Alu 0 312 136 195 42 0 0 chr13 23276623 23276647 -96468251 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1900 150 0 7 chr13 23276650 23276936 -96467962 - AluSx SINE Alu -28 284 1 1308 214 23 8 chr13 23277184 23277450 -96467448 - L1MB8 LINE L1 -6 6172 5903 26 0 0 0 chr13 23278183 23278209 -96466689 + AT_rich Low_complexity Low_complexity 1 26 0 642 257 30 15 chr13 23279216 23279418 -96465480 + L1MA6 LINE L1 5746 5950 -350 490 213 9 0 chr13 23279419 23279527 -96465371 + L1MA4A LINE L1 5746 5854 -449 538 127 218 0 chr13 23279570 23279680 -96465218 - MER1B DNA MER1_type -163 134 1 364 282 117 70 chr13 23279680 23279893 -96465005 + L2 LINE L2 2673 2895 -419 270 116 47 0 chr13 23280638 23280702 -96464196 - Alu SINE Alu 0 306 241 2210 92 7 10 chr13 23280758 23281096 -96463802 + AluSx SINE Alu 1 312 0 1700 162 7 23 chr13 23281492 23281794 -96463104 + AluJb SINE Alu 2 298 -14 384 335 60 38 chr13 23281804 23282252 -96462646 - L1ME4a LINE L1 -143 5978 5521 2257 121 0 0 chr13 23284201 23284506 -96460392 - AluSx SINE Alu -7 305 1 1221 120 54 7 chr13 23284722 23285086 -96459812 + MSTA LTR MaLR 3 426 -2 2216 97 3 19 chr13 23285676 23285985 -96458913 + AluSc SINE Alu 1 304 -5 203 189 0 57 chr13 23286580 23286633 -96458265 + GA-rich Low_complexity Low_complexity 2 51 0 2089 77 14 7 chr13 23286739 23287025 -96457873 + AluSx SINE Alu 1 288 -24 2702 133 29 16 chr13 23287279 23287942 -96456956 + L1M2 LINE L1 4915 5584 -728 272 310 106 9 chr13 23288519 23288632 -96456266 - L2 LINE L2 -518 2796 2673 2073 122 6 6 chr13 23288964 23289276 -96455622 + AluSx SINE Alu 1 312 0 2397 58 0 48 chr13 23290082 23290394 -96454504 - AluY SINE Alu -14 297 1 324 0 0 0 chr13 23291766 23291802 -96453096 + (TG)n Simple_repeat Simple_repeat 2 37 0 2540 41 0 0 chr13 23291900 23292192 -96452706 - AluY SINE Alu -19 292 1 201 275 0 0 chr13 23292388 23292428 -96452470 - L2 LINE L2 -2918 396 357 1667 128 0 8 chr13 23292823 23293065 -96451833 + AluSx SINE Alu 1 240 -72 225 154 0 0 chr13 23293075 23293114 -96451784 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 1062 127 33 0 chr13 23293953 23294103 -96450795 + AluJb SINE Alu 130 284 -28 2265 105 0 0 chr13 23294345 23294640 -96450258 + AluSc SINE Alu 1 295 -14 2243 95 0 7 chr13 23295165 23295461 -96449437 - AluSc SINE Alu -15 294 1 237 217 36 84 chr13 23295592 23295675 -96449223 + MIR SINE MIR 117 195 -67 22 0 0 0 chr13 23297002 23297024 -96447874 + AT_rich Low_complexity Low_complexity 1 22 0 345 218 39 70 chr13 23297815 23298022 -96446876 - L1ME LINE L1 -674 5496 5289 1127 226 16 69 chr13 23298026 23298344 -96446554 - AluJo SINE Alu -1 301 1 2178 83 7 0 chr13 23298614 23298892 -96446006 + AluSp SINE Alu 15 294 -19 201 94 0 0 chr13 23299303 23299335 -96445563 + (T)n Simple_repeat Simple_repeat 1 32 0 5114 130 38 19 chr13 23299421 23299483 -96445415 + L1PA16 LINE L1 5286 5345 -821 2404 76 0 7 chr13 23299483 23299787 -96445111 - AluY SINE Alu -9 302 1 5114 130 38 19 chr13 23299787 23300587 -96444311 + L1PA16 LINE L1 5345 6165 -1 23 33 0 0 chr13 23301024 23301054 -96443844 + AT_rich Low_complexity Low_complexity 1 30 0 2120 116 0 26 chr13 23301076 23301386 -96443512 - AluSx SINE Alu -10 302 1 21 0 0 0 chr13 23302109 23302130 -96442768 + AT_rich Low_complexity Low_complexity 1 21 0 1714 181 0 7 chr13 23302135 23302427 -96442471 - AluJo SINE Alu -22 290 1 254 348 31 10 chr13 23303308 23303408 -96441490 - MIR SINE MIR -99 109 7 607 280 21 74 chr13 23303514 23303757 -96441141 - MER102a DNA MER1_type -1 329 100 945 145 0 0 chr13 23304263 23304394 -96440504 + FLAM_C SINE Alu 2 132 -1 21 0 0 0 chr13 23304657 23304678 -96440220 + AT_rich Low_complexity Low_complexity 1 21 0 1903 163 0 3 chr13 23304856 23305150 -96439748 + AluJb SINE Alu 1 293 -19 225 286 130 52 chr13 23305393 23305547 -96439351 - L3 LINE CR1 -93 1484 1319 1959 150 6 25 chr13 23305784 23306098 -96438800 + AluSx SINE Alu 1 308 -4 308 143 0 79 chr13 23307291 23307354 -96437544 - MLT1C LTR MaLR -409 58 1 1349 178 23 100 chr13 23307358 23307493 -96437405 - MLT1C-int LTR MaLR -4 1367 1223 1949 142 0 14 chr13 23307493 23307788 -96437110 + AluSx SINE Alu 17 307 -5 1349 178 23 100 chr13 23307788 23308001 -96436897 - MLT1C-int LTR MaLR -148 1223 1046 1635 188 10 23 chr13 23308227 23308530 -96436368 + AluJo SINE Alu 1 299 -13 1516 177 0 71 chr13 23309064 23309375 -96435523 - AluJo SINE Alu -23 289 1 933 177 11 17 chr13 23309464 23309639 -96435259 + AluJo SINE Alu 35 208 -104 6702 222 102 29 chr13 23309640 23311586 -96433312 - L1 LINE L1 -846 5536 3734 2125 104 10 7 chr13 23311586 23311884 -96433014 - AluY SINE Alu -12 299 1 6702 222 102 29 chr13 23311884 23314533 -96430365 - L1 LINE L1 -2648 3734 526 289 200 0 0 chr13 23317282 23317327 -96427571 + MER3 DNA MER1_type 46 90 -119 * 866 115 7 47 chr13 23317288 23317436 -96427462 - MER3 DNA MER1_type -4 205 64 769 180 90 198 chr13 23317436 23317880 -96427018 - MSTD LTR MaLR 0 396 1 464 370 94 36 chr13 23317946 23318467 -96426431 - L2 LINE L2 -550 2764 2214 250 314 176 17 chr13 23319181 23319420 -96425478 - L2 LINE L2 -1093 2221 1945 253 286 101 25 chr13 23319737 23319856 -96425042 + L3 LINE CR1 476 603 -974 1698 181 7 3 chr13 23321270 23321558 -96423340 + AluJb SINE Alu 1 289 -23 1833 155 18 3 chr13 23321613 23321897 -96423001 - AluSx SINE Alu -24 288 1 26 0 0 0 chr13 23322128 23322154 -96422744 + AT_rich Low_complexity Low_complexity 1 26 0 285 266 75 0 chr13 23322303 23322397 -96422501 - L1MC4a LINE L1 -1869 5939 5839 27 29 0 0 chr13 23323195 23323229 -96421669 + AT_rich Low_complexity Low_complexity 1 34 0 4460 152 67 17 chr13 23324352 23324584 -96420314 + MER6 DNA MER2_type 1 220 -645 360 0 0 0 chr13 23324584 23324624 -96420274 + (TG)n Simple_repeat Simple_repeat 2 41 0 4460 152 67 17 chr13 23324624 23325214 -96419684 + MER6 DNA MER2_type 220 864 -1 500 262 166 0 chr13 23325439 23325626 -96419272 + MIR SINE MIR 26 243 -19 398 265 31 10 chr13 23327877 23327975 -96416923 + L2 LINE L2 3200 3299 -14 314 262 119 0 chr13 23328002 23328128 -96416770 + L1ME4a LINE L1 5978 6118 -3 1473 164 80 0 chr13 23328249 23328511 -96416387 + AluJb SINE Alu 11 293 -19 1870 108 4 4 chr13 23328853 23329122 -96415776 - AluSg1 SINE Alu 0 309 41 1472 161 37 37 chr13 23329647 23329945 -96414953 + AluJo SINE Alu 1 298 -14 1731 149 46 7 chr13 23330175 23330457 -96414441 - AluSg SINE Alu -12 298 6 1655 152 37 4 chr13 23330868 23331137 -96413761 + AluJo SINE Alu 1 278 -34 21 0 0 0 chr13 23331338 23331359 -96413539 + AT_rich Low_complexity Low_complexity 1 21 0 553 265 125 5 chr13 23331794 23331994 -96412904 - MIR SINE MIR -38 224 1 3283 147 46 18 chr13 23332079 23332758 -96412140 - L1MB4 LINE L1 -7 6671 5974 5579 50 81 1 chr13 23332770 23333514 -96411384 - L1PA7 LINE L1 -2 6152 5350 42764 33 23 1 chr13 23333526 23339549 -96405349 - L1PA3 LINE L1 0 6155 2 2349 77 0 3 chr13 23339565 23339862 -96405036 - AluY SINE Alu -15 296 1 778 133 36 182 chr13 23339863 23340033 -96404865 - L1MB4 LINE L1 -709 5969 5845 1638 194 13 3 chr13 23340033 23340332 -96404566 - AluJo SINE Alu -6 306 5 778 133 36 182 chr13 23340332 23340439 -96404459 - L1MB4 LINE L1 -833 5845 5724 1913 171 65 36 chr13 23340440 23340511 -96404387 - Tigger2a DNA MER2_type -2274 434 367 1434 172 12 106 chr13 23340511 23340842 -96404056 - AluJo SINE Alu -2 300 1 1913 171 65 36 chr13 23340842 23341184 -96403714 - Tigger2a DNA MER2_type -2341 367 9 4063 185 43 138 chr13 23341191 23342309 -96402589 - L1MB4 LINE L1 -920 5724 4501 414 0 0 0 chr13 23342309 23342355 -96402543 + (TG)n Simple_repeat Simple_repeat 2 47 0 4063 185 43 138 chr13 23342355 23342763 -96402135 - L1MB4 LINE L1 -2143 4501 4355 1609 201 0 16 chr13 23342763 23343077 -96401821 - AluJb SINE Alu 0 312 4 4063 185 43 138 chr13 23343077 23343152 -96401746 - L1MB4 LINE L1 -2289 4355 4274 2096 169 26 3 chr13 23343152 23343501 -96401397 - MER73 LTR ERVL 0 644 288 * 2195 174 23 8 chr13 23343497 23343881 -96401017 - MER54A LTR ERVL -509 392 3 4758 218 51 21 chr13 23343882 23344317 -96400581 - L1MB4 LINE L1 -2367 4277 3856 2127 126 7 0 chr13 23344317 23344611 -96400287 + AluSx SINE Alu 1 296 -16 4758 218 51 21 chr13 23344611 23345878 -96399020 - L1MB4 LINE L1 -2788 3856 2521 2008 177 93 7 chr13 23345909 23346360 -96398538 - L1MB2 LINE L1 -1 6170 5681 * 3901 189 123 55 chr13 23346359 23346990 -96397908 - L1MB4 LINE L1 -4125 2521 1934 2280 103 3 3 chr13 23346990 23347302 -96397596 - AluSx SINE Alu 0 312 1 216 0 0 0 chr13 23347303 23347327 -96397571 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1974 132 3 3 chr13 23347329 23347616 -96397282 - AluSx SINE Alu -25 287 1 3901 189 123 55 chr13 23347616 23347796 -96397102 - L1MB4 LINE L1 -4712 1934 1768 1920 208 47 13 chr13 23347796 23348248 -96396650 - MLT1C LTR MaLR 0 467 1 3901 189 123 55 chr13 23348248 23348678 -96396220 - L1MB4 LINE L1 -4878 1768 1189 3040 146 64 39 chr13 23348762 23349291 -96395607 - LTR9 LTR ERV1 -37 575 30 1973 143 7 0 chr13 23349291 23349598 -96395300 - AluSx SINE Alu -1 311 3 3040 146 64 39 chr13 23349598 23349629 -96395269 - LTR9 LTR ERV1 -582 30 1 508 207 107 0 chr13 23349798 23349938 -96394960 - L1M2 LINE L1 -4159 2690 2536 2094 118 0 0 chr13 23349973 23350252 -96394646 - AluSg SINE Alu -31 279 1 445 211 68 23 chr13 23350284 23350417 -96394481 - L1MB4 LINE L1 -5587 955 817 405 278 23 8 chr13 23350505 23350638 -96394260 - L1MB4 LINE L1 -5710 936 802 309 249 93 63 chr13 23350943 23351148 -96393750 - L1MB4 LINE L1 -6293 249 39 276 264 64 43 chr13 23351549 23351689 -96393209 + L1MC4 LINE L1 7190 7332 -710 255 256 65 87 chr13 23351795 23352099 -96392799 + L1MC4 LINE L1 7274 7677 -365 1945 128 11 3 chr13 23353377 23353659 -96391239 + AluSx SINE Alu 7 290 -22 2387 90 3 0 chr13 23353659 23353959 -96390939 + AluSp SINE Alu 1 301 -12 1062 118 0 20 chr13 23353959 23354112 -96390786 - AluSq/x SINE Alu -162 151 2 1100 155 98 136 chr13 23354335 23354400 -96390498 - MLT1A1 LTR MaLR 0 365 299 1955 5 0 0 chr13 23354400 23354612 -96390286 + AluYa5 SINE Alu 100 311 0 1100 155 98 136 chr13 23354612 23354914 -96389984 - MLT1A1 LTR MaLR -66 299 12 349 254 98 33 chr13 23355310 23355432 -96389466 - HAL1 LINE L1 -100 2407 2278 1360 182 102 15 chr13 23355702 23355966 -96388932 - AluJb SINE Alu -25 287 1 600 277 80 9 chr13 23355981 23356205 -96388693 - HAL1 LINE L1 -628 1879 1640 454 220 87 144 chr13 23356841 23357105 -96387793 - MIR SINE MIR -10 252 4 2189 107 0 10 chr13 23358038 23358337 -96386561 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr13 23358890 23358912 -96385986 + AT_rich Low_complexity Low_complexity 1 22 0 808 245 76 8 chr13 23359383 23359620 -96385278 + MER46C DNA MER2_type 86 338 0 1849 164 0 10 chr13 23359626 23359925 -96384973 - AluJo SINE Alu -16 296 1 208 198 169 0 chr13 23360119 23360175 -96384723 - MIR SINE MIR -76 132 67 2025 118 3 37 chr13 23361003 23361326 -96383572 + AluSx SINE Alu 1 312 0 12979 191 32 29 chr13 23361300 23367724 -96377174 + L1PB1 LINE L1 104 6864 -3 2345 73 0 23 chr13 23368508 23368809 -96376089 + AluSx SINE Alu 1 294 -18 1826 122 11 8 chr13 23369578 23369841 -96375057 + AluSx SINE Alu 42 305 -7 2195 110 0 3 chr13 23370068 23370360 -96374538 + AluSg SINE Alu 1 291 -19 436 213 46 9 chr13 23370403 23370511 -96374387 - L1ME1 LINE L1 -6 6160 6049 25 0 0 0 chr13 23370804 23370829 -96374069 + AT_rich Low_complexity Low_complexity 1 25 0 1252 294 88 13 chr13 23370984 23371439 -96373459 - L2 LINE L2 0 3313 2825 22 0 0 0 chr13 23371937 23371959 -96372939 + AT_rich Low_complexity Low_complexity 1 22 0 727 189 0 0 chr13 23372778 23372900 -96371998 + FRAM SINE Alu 1 122 -54 384 265 179 0 chr13 23372903 23373054 -96371844 - L3 LINE CR1 -723 854 677 1331 98 113 0 chr13 23373432 23373636 -96371262 + MER30 DNA MER1_type 4 230 0 489 224 97 30 chr13 23373948 23374113 -96370785 - MIR SINE MIR -1 261 86 2278 119 3 0 chr13 23374165 23374476 -96370422 - AluSx SINE Alu 0 312 1 398 329 127 21 chr13 23374858 23375095 -96369803 - MIR SINE MIR 0 262 1 641 172 6 38 chr13 23375133 23375211 -96369687 - L1MB3 LINE L1 -12 6171 6099 2304 106 0 3 chr13 23375211 23375513 -96369385 + AluSx SINE Alu 1 301 -11 641 172 6 38 chr13 23375513 23375591 -96369307 - L1MB3 LINE L1 -84 6099 6020 23 33 0 0 chr13 23375593 23375623 -96369275 + AT_rich Low_complexity Low_complexity 1 30 0 694 218 0 0 chr13 23375875 23375999 -96368899 + FLAM_A SINE Alu 1 124 -9 289 329 7 20 chr13 23376075 23376169 -96368729 - MARNA DNA Mariner -179 407 314 1441 91 68 27 chr13 23376169 23376390 -96368508 - MER30 DNA MER1_type 0 230 1 289 329 7 20 chr13 23376390 23376441 -96368457 - MARNA DNA Mariner -272 314 264 383 301 0 32 chr13 23376722 23376845 -96368053 - L2 LINE L2 -5 3267 3149 2242 93 3 0 chr13 23377836 23378125 -96366773 - AluSp SINE Alu -23 290 1 2540 57 0 0 chr13 23378968 23379269 -96365629 - AluY SINE Alu -10 301 1 225 0 0 0 chr13 23379740 23379765 -96365133 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2082 125 0 0 chr13 23379765 23380045 -96364853 - AluSx SINE Alu -32 280 1 311 238 30 50 chr13 23381065 23381166 -96363732 + MIR SINE MIR 164 262 0 891 291 95 30 chr13 23381866 23382179 -96362719 - L1ME3 LINE L1 -211 5951 5660 2222 101 7 14 chr13 23382179 23382475 -96362423 + AluSg SINE Alu 1 294 -16 891 291 95 30 chr13 23382475 23382970 -96361928 - L1ME3 LINE L1 -502 5660 5054 2330 100 0 3 chr13 23382970 23383270 -96361628 + AluSg SINE Alu 1 299 -11 891 291 95 30 chr13 23383270 23383574 -96361324 - L1ME3 LINE L1 -1108 5054 4771 449 232 21 0 chr13 23384381 23384451 -96360447 - MER69 DNA AcHobo -2 2524 2457 1745 163 22 0 chr13 23384451 23384728 -96360170 + AluJb SINE Alu 1 283 -29 449 232 21 0 chr13 23384728 23384799 -96360099 - MER69 DNA AcHobo -69 2457 2380 298 183 157 166 chr13 23385163 23385398 -96359500 - MIR SINE MIR -24 238 6 24 0 0 0 chr13 23386436 23386460 -96358438 + AT_rich Low_complexity Low_complexity 1 24 0 327 276 163 44 chr13 23386628 23386831 -96358067 - MIR SINE MIR -1 261 35 1769 172 3 7 chr13 23387713 23388010 -96356888 - AluJb SINE Alu -16 296 1 21 36 0 0 chr13 23388053 23388081 -96356817 + AT_rich Low_complexity Low_complexity 1 28 0 34 42 0 0 chr13 23388245 23388293 -96356605 + AT_rich Low_complexity Low_complexity 1 48 0 1030 194 84 40 chr13 23388541 23388668 -96356230 - MLT1F LTR MaLR -13 529 409 1792 159 77 11 chr13 23388668 23389020 -96355878 - THE1C LTR MaLR 0 375 1 1030 194 84 40 chr13 23389020 23389165 -96355733 - MLT1F LTR MaLR -133 409 245 385 327 155 9 chr13 23390743 23391092 -96353806 - L2 LINE L2 -26 3287 2888 3293 178 98 14 chr13 23393111 23394029 -96350869 - L1MB8 LINE L1 0 6178 5195 560 219 19 0 chr13 23394048 23394153 -96350745 - FLAM_A SINE Alu -35 107 1 443 158 0 20 chr13 23394155 23394256 -96350642 - L1MB8 LINE L1 -944 5202 5104 2823 3 0 0 chr13 23395017 23395322 -96349576 + AluYa5 SINE Alu 1 305 -6 403 236 217 19 chr13 23395871 23396032 -96348866 + L2 LINE L2 3121 3313 0 837 230 177 38 chr13 23396238 23396590 -96348308 - MLT1F LTR MaLR -2 553 98 1714 177 3 29 chr13 23396590 23396763 -96348135 - AluJo SINE Alu -9 303 140 2407 70 0 19 chr13 23396763 23397075 -96347823 - AluY SINE Alu -5 306 1 1714 177 3 29 chr13 23397075 23397212 -96347686 - AluJo SINE Alu -172 140 1 837 230 177 38 chr13 23397212 23397326 -96347572 - MLT1F LTR MaLR -457 98 1 271 300 100 0 chr13 23397676 23397776 -96347122 - MIR SINE MIR -53 209 100 2086 131 14 0 chr13 23398165 23398462 -96346436 - AluSx SINE Alu -11 301 1 2238 104 3 0 chr13 23398462 23398759 -96346139 - AluSg SINE Alu -12 298 1 2263 93 30 3 chr13 23398787 23399088 -96345810 - AluSp SINE Alu -4 309 1 190 237 26 0 chr13 23399371 23399409 -96345489 - L2 LINE L2 -20 3252 3214 3483 105 58 27 chr13 23400264 23400884 -96344014 - L1MA4A LINE L1 -8 6295 5657 3587 176 41 25 chr13 23401201 23401243 -96343655 - L1MB3 LINE L1 -1 6182 6142 2254 84 7 10 chr13 23401243 23401540 -96343358 - AluSx SINE Alu -16 296 1 3587 176 41 25 chr13 23401540 23401884 -96343014 - L1MB3 LINE L1 -41 6142 5805 7728 117 56 5 chr13 23401884 23403121 -96341777 + HSMAR2 DNA Mariner 2 1301 -1 3587 176 41 25 chr13 23403121 23403561 -96341337 - L1MB3 LINE L1 -378 5805 5342 600 198 33 61 chr13 23403573 23403785 -96341113 - L1MB3 LINE L1 -920 5226 5021 331 251 160 76 chr13 23404702 23404977 -96339921 + MER102b DNA MER1_type 17 314 -27 1898 194 98 20 chr13 23405216 23405705 -96339193 - MLT2B3 LTR ERVL -27 527 1 1909 138 81 3 chr13 23406900 23407248 -96337650 - THE1C LTR MaLR 0 375 1 272 266 165 39 chr13 23407542 23407982 -96336916 - L1ME LINE L1 -519 5645 5127 2107 112 49 0 chr13 23407982 23408268 -96336630 - AluSx SINE Alu -12 300 1 272 266 165 39 chr13 23408268 23408324 -96336574 - L1ME LINE L1 -1037 5127 5079 384 218 34 0 chr13 23408413 23408560 -96336338 + (TA)n Simple_repeat Simple_repeat 2 153 0 252 32 0 0 chr13 23408582 23408613 -96336285 + AluSq/x SINE Alu 74 104 -199 23 33 0 0 chr13 23409385 23409415 -96335483 + AT_rich Low_complexity Low_complexity 1 30 0 2478 56 0 34 chr13 23409980 23410302 -96334596 - AluY SINE Alu 0 311 1 222 151 57 38 chr13 23410484 23410537 -96334361 + L2 LINE L2 3207 3260 -12 2098 137 3 0 chr13 23410775 23411075 -96333823 + AluSx SINE Alu 1 301 -11 2073 118 31 3 chr13 23411342 23411629 -96333269 - AluSp SINE Alu -18 295 1 509 203 32 57 chr13 23412402 23412525 -96332373 + FLAM_A SINE Alu 1 120 -13 2400 76 10 0 chr13 23413141 23413442 -96331456 - AluY SINE Alu -7 304 1 211 310 28 0 chr13 23413449 23413520 -96331378 + L2 LINE L2 3229 3301 -12 1792 148 13 23 chr13 23413646 23413949 -96330949 + AluSx SINE Alu 1 300 -12 215 316 146 24 chr13 23414229 23414435 -96330463 + L2 LINE L2 2127 2357 -957 924 276 117 23 chr13 23415398 23415826 -96329072 - MLT1L LTR MaLR -3 612 145 3303 183 35 13 chr13 23415842 23416466 -96328432 - LTR9B LTR ERV1 0 644 7 1337 161 7 14 chr13 23416475 23416725 -96328173 - HUERS-P3 LTR ERV1 -6 8913 7168 740 177 86 11 chr13 23417016 23417202 -96327696 - HUERS-P3 LTR ERV1 -537 4343 4144 3828 188 51 77 chr13 23417203 23418011 -96326887 - HUERS-P3 LTR ERV1 -1934 6985 6198 2634 39 0 3 chr13 23418011 23418320 -96326578 - AluY SINE Alu -3 308 1 3828 188 51 77 chr13 23418320 23418357 -96326541 - HUERS-P3 LTR ERV1 -2721 6198 6162 * 4258 125 8 8 chr13 23418342 23418960 -96325938 - HUERS-P3 LTR ERV1 -3342 5577 4960 789 221 36 0 chr13 23418971 23419111 -96325787 - HUERS-P3 LTR ERV1 -4236 4683 4539 * 1032 127 24 24 chr13 23419104 23419269 -96325629 - HUERS-P3 LTR ERV1 -5635 3284 3120 2328 270 107 38 chr13 23419269 23420600 -96324298 - L1MEc LINE L1 -4428 1968 546 410 323 0 23 chr13 23420600 23420733 -96324165 - L2 LINE L2 -920 2394 2265 * 639 274 39 10 chr13 23420730 23420938 -96323960 + L2 LINE L2 1902 2115 -1199 4452 271 110 38 chr13 23421053 23422335 -96322563 - L1ME LINE L1 -482 5688 4499 1745 162 3 26 chr13 23422335 23422638 -96322260 - AluJb SINE Alu -16 296 1 4452 271 110 38 chr13 23422638 23422878 -96322020 - L1ME LINE L1 -1671 4499 4278 405 0 0 0 chr13 23422878 23422923 -96321975 + (TG)n Simple_repeat Simple_repeat 2 46 0 4452 271 110 38 chr13 23422923 23422956 -96321942 - L1ME LINE L1 -1892 4278 4249 2097 129 10 6 chr13 23422956 23423267 -96321631 + AluSx SINE Alu 1 312 0 4452 271 110 38 chr13 23423267 23424622 -96320276 - L1ME LINE L1 -1921 4249 2565 694 304 36 24 chr13 23424831 23425163 -96319735 - L1M4 LINE L1 -1995 4151 3816 1880 154 22 3 chr13 23425234 23425546 -96319352 - L1PA16 LINE L1 -21 6145 5828 2437 92 0 0 chr13 23425546 23425852 -96319046 - AluSq SINE Alu -7 306 1 2166 116 3 0 chr13 23425855 23426166 -96318732 - AluSx SINE Alu 0 312 1 1720 182 51 22 chr13 23426167 23426580 -96318318 - L1 LINE L1 -2139 4007 3583 771 109 0 36 chr13 23426719 23426829 -96318069 - AluSg SINE Alu -176 134 29 10037 142 23 42 chr13 23426829 23427303 -96317595 - L1PA15-16 LINE L1 -3489 3360 2878 351 0 0 0 chr13 23427303 23427342 -96317556 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2031 131 4 0 chr13 23427342 23427616 -96317282 - AluSc SINE Alu -34 275 1 10037 142 23 42 chr13 23427616 23427892 -96317006 - L1PA15-16 LINE L1 -3970 2879 2599 10639 25 19 118 chr13 23427892 23429429 -96315469 + SVA Other Other 3 1386 0 10037 142 23 42 chr13 23429429 23430757 -96314141 - L1PA15-16 LINE L1 -4250 2599 1305 2494 166 15 0 chr13 23430763 23431167 -96313731 - L1PA15-16 LINE L1 -6437 412 3 335 338 117 25 chr13 23431168 23431485 -96313413 - L1M4 LINE L1 -2322 3824 3479 609 144 33 0 chr13 23431496 23431586 -96313312 + AluSg/x SINE Alu 201 293 -16 698 176 119 6 chr13 23431930 23432089 -96312809 + MER96B DNA MER1_type? 3 179 -238 514 268 0 8 chr13 23432613 23432736 -96312162 - MER112 DNA MER1_type 0 260 139 432 0 0 0 chr13 23432754 23432802 -96312096 + (TG)n Simple_repeat Simple_repeat 2 49 0 580 255 15 49 chr13 23432852 23433065 -96311833 + MIR3 SINE MIR 13 208 0 1981 118 0 11 chr13 23433124 23433403 -96311495 + AluSx SINE Alu 1 276 -36 207 0 0 0 chr13 23433410 23433433 -96311465 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 360 0 0 0 chr13 23434056 23434096 -96310802 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 269 115 13 chr13 23434171 23434249 -96310649 - MIR SINE MIR -29 233 148 755 204 62 138 chr13 23434281 23434830 -96310068 - L1MC5 LINE L1 -50 7911 7405 478 239 39 23 chr13 23434830 23434960 -96309938 - MIR SINE MIR -42 220 89 216 0 0 0 chr13 23435238 23435262 -96309636 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 270 0 0 0 chr13 23436308 23436338 -96308560 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2013 126 0 0 chr13 23436341 23436618 -96308280 - AluSx SINE Alu -25 287 11 232 337 20 0 chr13 23438381 23438479 -96306419 + L3b LINE CR1 1125 1224 -359 2161 121 26 10 chr13 23438699 23439006 -96305892 - AluSx SINE Alu 0 312 1 587 316 16 5 chr13 23439751 23439938 -96304960 - MER5A DNA MER1_type 0 189 1 198 239 209 0 chr13 23440291 23440358 -96304540 - L2 LINE L2 -1 3312 3232 244 261 153 9 chr13 23440723 23440834 -96304064 + MIR SINE MIR 81 207 -55 759 187 0 0 chr13 23441130 23441253 -96303645 - AluJb SINE Alu 0 312 190 888 198 210 24 chr13 23441255 23441412 -96303486 - AluSp SINE Alu -4 299 173 1460 127 5 9 chr13 23441412 23441632 -96303266 - AluSc SINE Alu -4 305 87 5837 129 47 17 chr13 23441634 23442575 -96302323 + LTR5 LTR ERVK 1 969 0 888 198 210 24 chr13 23442575 23442666 -96302232 - AluSp SINE Alu -130 173 1 2449 92 0 0 chr13 23443406 23443709 -96301189 + AluSc SINE Alu 1 303 -6 2138 125 10 0 chr13 23443761 23444057 -96300841 + AluSx SINE Alu 1 299 -13 207 0 0 0 chr13 23444062 23444085 -96300813 + (CA)n Simple_repeat Simple_repeat 2 24 0 922 116 0 0 chr13 23444707 23444828 -96300070 - FRAM SINE Alu -28 148 28 2943 183 42 34 chr13 23444828 23445441 -96299457 + MER54A LTR ERVL 284 901 0 891 67 117 0 chr13 23447163 23447283 -96297615 - MER85 DNA T2_type -2 137 4 1798 174 3 10 chr13 23448636 23448946 -96295952 - AluJb SINE Alu -4 308 1 12053 206 21 10 chr13 23450096 23453829 -96291069 - L1PA16 LINE L1 -9 6157 2348 2145 126 0 0 chr13 23453831 23454124 -96290774 + AluSg SINE Alu 1 293 -17 2220 130 0 0 chr13 23456984 23457291 -96287607 - AluSx SINE Alu -5 307 1 1691 210 36 0 chr13 23458732 23459061 -96285837 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chr13 23459720 23459741 -96285157 + AT_rich Low_complexity Low_complexity 1 21 0 3333 125 32 51 chr13 23459758 23460348 -96284550 - LTR14B LTR ERVK -13 595 17 417 295 114 18 chr13 23460443 23460609 -96284289 - MER5A DNA MER1_type 0 189 8 239 368 0 11 chr13 23460644 23460731 -96284167 - MER5A DNA MER1_type -31 158 73 2471 176 55 16 chr13 23460869 23461359 -96283539 - LTR22 LTR ERVK 0 509 1 1744 170 0 14 chr13 23461492 23461781 -96283117 + AluJo SINE Alu 1 285 -27 2149 116 0 25 chr13 23461792 23462112 -96282786 + AluSq SINE Alu 1 312 -1 459 271 172 36 chr13 23463283 23463504 -96281394 + MIR SINE MIR 2 252 -10 243 225 231 31 chr13 23463670 23463830 -96281068 - Charlie7 DNA MER1_type 0 2612 2421 337 269 135 7 chr13 23464070 23464211 -96280687 - L1ME LINE L1 -379 5742 5584 789 169 8 0 chr13 23464230 23464354 -96280544 - FLAM_C SINE Alu -7 126 2 2168 123 0 3 chr13 23465094 23465395 -96279503 + AluSx SINE Alu 1 300 -12 1297 135 5 10 chr13 23466644 23466844 -96278054 - AluSg/x SINE Alu -30 280 82 185 352 77 40 chr13 23467320 23467567 -96277331 - L2 LINE L2 -912 2402 2147 843 215 15 80 chr13 23467692 23468017 -96276881 + L1M4 LINE L1 972 1275 -5267 5328 100 28 10 chr13 23468018 23468818 -96276080 + L1PA16 LINE L1 5351 6164 -2 2312 192 61 42 chr13 23468811 23468921 -96275977 + L1M4 LINE L1 1255 1361 -5285 * 1765 159 30 14 chr13 23468921 23469217 -96275681 + AluJo SINE Alu 7 307 -5 2312 192 61 42 chr13 23469217 23469757 -96275141 + L1M4 LINE L1 1361 1918 -4728 1738 177 14 0 chr13 23469760 23470042 -96274856 + AluJb SINE Alu 4 289 -23 2219 112 3 0 chr13 23470389 23470683 -96274215 + AluSp SINE Alu 1 295 -18 1834 137 3 27 chr13 23470862 23471154 -96273744 - LTR22A LTR ERVK 0 458 174 6746 103 9 3 chr13 23471154 23472083 -96272815 - HERVK22 LTR ERVK -3760 3077 2144 6071 132 20 2 chr13 23472083 23473000 -96271898 - HERVK22 LTR ERVK -5902 935 3 3105 121 4 11 chr13 23473002 23473457 -96271441 - LTR22A LTR ERVK 0 458 7 787 194 65 19 chr13 23473503 23473658 -96271240 - AluJo/FRAM SINE Alu -17 295 134 479 195 52 0 chr13 23473661 23473738 -96271160 - AluJ/FLAM SINE Alu -230 82 2 847 156 0 8 chr13 23473843 23473971 -96270927 + FLAM_C SINE Alu 2 128 -5 472 278 60 60 chr13 23474123 23474357 -96270541 - MIR SINE MIR -14 248 15 2532 53 0 22 chr13 23474987 23475305 -96269593 + AluY SINE Alu 1 311 0 223 218 23 35 chr13 23475802 23475889 -96269009 + A-rich Low_complexity Low_complexity 2 87 0 542 120 20 30 chr13 23476980 23477080 -96267818 - L1MA10 LINE L1 -1 6333 6235 252 208 0 0 chr13 23477557 23477610 -96267288 - L1ME3A LINE L1 -11 6159 6107 2129 209 43 9 chr13 23477646 23478092 -96266806 - MER65C LTR ERV1 0 461 1 307 255 0 0 chr13 23478106 23478192 -96266706 - L1ME3 LINE L1 -174 5996 5911 2167 124 0 19 chr13 23478193 23478500 -96266398 + AluSx SINE Alu 1 301 -11 3776 185 54 68 chr13 23478603 23479048 -96265850 - Charlie5 DNA MER1_type -846 1778 1328 1829 156 3 29 chr13 23479048 23479355 -96265543 + AluJb SINE Alu 1 299 -13 3776 185 54 68 chr13 23479355 23479402 -96265496 - Charlie5 DNA MER1_type -1296 1328 1282 1666 172 10 10 chr13 23479402 23479705 -96265193 + AluJb SINE Alu 3 305 -7 3776 185 54 68 chr13 23479705 23480206 -96264692 - Charlie5 DNA MER1_type -1342 1282 798 800 205 0 13 chr13 23480206 23480357 -96264541 + Tigger2a DNA MER2_type 1 149 -285 366 47 0 0 chr13 23480353 23480396 -96264502 - Tigger2 DNA MER2_type -263 2455 2413 * 1575 150 71 11 chr13 23480449 23480729 -96264169 + Tigger2 DNA MER2_type 2422 2718 0 3110 201 84 10 chr13 23480738 23481066 -96263832 - Charlie5 DNA MER1_type -1834 790 488 1728 168 118 28 chr13 23481066 23481429 -96263469 + MSTD LTR MaLR 1 396 0 3110 201 84 10 chr13 23481429 23481828 -96263070 - Charlie5 DNA MER1_type -2136 488 9 2181 83 7 13 chr13 23481851 23482151 -96262747 - AluY SINE Alu -13 298 1 2532 53 0 22 chr13 23482815 23483133 -96261765 - AluY SINE Alu 0 311 1 471 270 64 60 chr13 23483763 23483996 -96260902 + MIR SINE MIR 15 248 -14 847 156 0 8 chr13 23484148 23484276 -96260622 - FLAM_C SINE Alu -5 128 2 1791 163 3 29 chr13 23484381 23484687 -96260211 + AluJb SINE Alu 2 299 -13 1517 191 73 102 chr13 23484688 23484734 -96260164 - Charlie5 DNA MER1_type -1295 1329 1283 1666 172 10 10 chr13 23484734 23485037 -96259861 + AluJb SINE Alu 3 305 -7 1517 191 73 102 chr13 23485037 23485538 -96259360 - Charlie5 DNA MER1_type -1341 1283 798 800 205 0 13 chr13 23485538 23485689 -96259209 + Tigger2a DNA MER2_type 1 149 -285 366 47 0 0 chr13 23485685 23485728 -96259170 - Tigger2 DNA MER2_type -253 2465 2423 * 1552 150 71 11 chr13 23485781 23486061 -96258837 + Tigger2 DNA MER2_type 2422 2718 0 3049 202 84 11 chr13 23486070 23486398 -96258500 - Charlie5 DNA MER1_type -1834 790 487 1728 168 118 28 chr13 23486398 23486761 -96258137 + MSTD LTR MaLR 1 396 0 3049 202 84 11 chr13 23486761 23487161 -96257737 - Charlie5 DNA MER1_type -2137 487 9 2237 77 7 13 chr13 23487184 23487484 -96257414 - AluY SINE Alu -13 298 1 481 248 121 27 chr13 23487516 23487811 -96257087 - L1MC4a LINE L1 -1903 5905 5548 248 244 81 24 chr13 23487914 23488037 -96256861 - L1MC4a LINE L1 -2331 5477 5348 1518 240 271 25 chr13 23488202 23488622 -96256276 + L2 LINE L2 1548 1863 -1451 2185 85 21 4 chr13 23488622 23488931 -96255967 - AluSq SINE Alu 0 314 1 1518 240 271 25 chr13 23488931 23489239 -96255659 + L2 LINE L2 1863 2457 -857 257 212 106 97 chr13 23489222 23489335 -96255563 - L2 LINE L2 -2674 640 527 * 206 32 32 0 chr13 23489341 23489372 -96255526 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 1984 139 3 7 chr13 23489372 23489661 -96255237 - AluSx SINE Alu -24 288 1 813 150 0 8 chr13 23489663 23489790 -96255108 - AluJb SINE Alu -16 296 171 380 261 369 11 chr13 23489798 23490158 -96254740 - L2 LINE L2 -2793 521 33 403 319 292 0 chr13 23490225 23490386 -96254512 + L2 LINE L2 2973 3086 -227 204 40 0 0 chr13 23490386 23490411 -96254487 + (TG)n Simple_repeat Simple_repeat 2 26 0 403 319 292 0 chr13 23490411 23490509 -96254389 + L2 LINE L2 3086 3308 -5 1015 144 6 35 chr13 23492735 23492909 -96251989 + AluJo SINE Alu 120 288 -24 204 242 22 132 chr13 23493399 23493490 -96251408 - L2 LINE L2 -5 3267 3187 193 303 110 19 chr13 23493481 23493636 -96251262 + L3 LINE CR1 1101 1269 -308 * 604 197 25 8 chr13 23493805 23493927 -96250971 - Charlie1 DNA MER1_type 0 2761 2638 2119 109 7 3 chr13 23493928 23494212 -96250686 + AluSx SINE Alu 1 285 -27 683 219 0 0 chr13 23494753 23494872 -96250026 - FLAM_A SINE Alu -10 123 5 2105 130 7 3 chr13 23494915 23495208 -96249690 - AluSx SINE Alu -18 294 1 706 251 51 122 chr13 23495300 23495826 -96249072 - L1MC4 LINE L1 -1 8041 7553 1523 137 76 54 chr13 23495836 23496136 -96248762 - AluSx SINE Alu 0 306 1 35 63 0 0 chr13 23496818 23496881 -96248017 + AT_rich Low_complexity Low_complexity 1 63 0 233 296 157 0 chr13 23499479 23499587 -96245311 - L1MC/D LINE L1 -1904 5904 5780 389 221 136 14 chr13 23499707 23499847 -96245051 - L1ME4a LINE L1 -6 6115 5959 1405 189 148 84 chr13 23500806 23501245 -96243653 - MLT1C LTR MaLR 0 467 1 251 180 0 33 chr13 23501297 23501358 -96243540 + MER46C DNA MER2_type 83 141 -197 692 254 35 22 chr13 23501573 23501801 -96243097 - L1M4c LINE L1 -6124 260 30 392 192 26 0 chr13 23501816 23501894 -96243004 + MER46C DNA MER2_type 256 335 -3 382 269 37 37 chr13 23502280 23502414 -96242484 - MIR SINE MIR -108 154 21 1987 151 3 0 chr13 23502437 23502742 -96242156 - AluJb SINE Alu -6 306 1 364 281 97 42 chr13 23502974 23503212 -96241686 - L1ME4a LINE L1 -2262 5546 5296 931 268 236 20 chr13 23503304 23503800 -96241098 + L2 LINE L2 2149 2536 -777 2130 80 23 47 chr13 23503800 23504099 -96240799 - AluSp SINE Alu -21 292 1 931 268 236 20 chr13 23504099 23504475 -96240423 + L2 LINE L2 2536 3215 -98 887 167 54 12 chr13 23504477 23504645 -96240253 - AluJo SINE Alu -17 295 121 291 307 0 0 chr13 23504645 23504720 -96240178 + L2 LINE L2 3236 3310 -3 409 234 103 0 chr13 23505481 23505626 -96239272 + L1M4 LINE L1 5021 5180 -966 517 218 84 101 chr13 23506027 23506256 -96238642 - L1MC5 LINE L1 -35 7926 7704 1875 132 7 7 chr13 23506256 23506536 -96238362 + AluSx SINE Alu 1 280 -32 517 218 84 101 chr13 23506536 23506673 -96238225 - L1MC5 LINE L1 -257 7704 7566 243 281 18 0 chr13 23506973 23507030 -96237868 - L2 LINE L2 0 3272 3215 359 224 109 90 chr13 23507030 23507186 -96237712 - L1MC/D LINE L1 -2098 5710 5552 1032 145 70 0 chr13 23507199 23507371 -96237527 - AluSg/x SINE Alu -11 301 118 529 250 30 43 chr13 23507904 23508068 -96236830 - MER3 DNA MER1_type 0 209 48 280 272 152 0 chr13 23508527 23508619 -96236279 - L2 LINE L2 -4 3268 3163 365 267 64 45 chr13 23508619 23508821 -96236077 - L1MC4 LINE L1 -965 7077 6872 2102 72 72 10 chr13 23508833 23509158 -96235740 - AluY SINE Alu 0 343 1 1136 185 37 8 chr13 23511856 23512099 -96232799 + L1MB3 LINE L1 5931 6180 -3 589 231 32 32 chr13 23512291 23512447 -96232451 - L2 LINE L2 -38 3275 3120 604 267 287 22 chr13 23512680 23513730 -96231168 - L2 LINE L2 -537 2777 1450 304 275 180 5 chr13 23514133 23514322 -96230576 - L1MC4 LINE L1 0 8042 7821 284 167 39 13 chr13 23514423 23514501 -96230397 - L2 LINE L2 -2464 850 771 946 170 71 11 chr13 23515386 23515568 -96229330 + MER46A DNA MER2_type 44 236 0 325 304 121 4 chr13 23515841 23516233 -96228665 - L1MC/D LINE L1 -592 5570 5127 698 225 0 0 chr13 23516503 23516632 -96228266 + Tigger1 DNA MER2_type 10 138 -2280 3917 96 19 13 chr13 23516644 23517167 -96227731 - MER1A DNA MER1_type -1 526 1 352 198 86 35 chr13 23517190 23517306 -96227592 - L1M4 LINE L1 -905 5241 5120 444 244 74 15 chr13 23517596 23517731 -96227167 + MIR SINE MIR 49 191 -71 241 229 43 29 chr13 23517970 23518040 -96226858 + MER116 DNA Mariner 1 71 -9 219 301 73 32 chr13 23518091 23518214 -96226684 + L2 LINE L2 2618 2745 -569 227 267 0 0 chr13 23518224 23518284 -96226614 + Charlie7 DNA MER1_type 38 97 -2515 21 36 0 0 chr13 23518725 23518753 -96226145 + AT_rich Low_complexity Low_complexity 1 28 0 562 203 13 51 chr13 23519724 23519882 -96225016 + L1MC5 LINE L1 7059 7210 -751 30 59 0 0 chr13 23521029 23521080 -96223818 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr13 23522035 23522058 -96222840 + AT_rich Low_complexity Low_complexity 1 23 0 642 187 0 0 chr13 23522185 23522640 -96222258 + (TA)n Simple_repeat Simple_repeat 1 455 0 230 232 18 0 chr13 23522753 23522809 -96222089 + MLT1B LTR MaLR 334 390 0 204 97 0 0 chr13 23523229 23523260 -96221638 + (TG)n Simple_repeat Simple_repeat 2 32 0 2041 68 7 58 chr13 23523628 23523938 -96220960 + AluY SINE Alu 5 298 -13 317 324 14 0 chr13 23524367 23524488 -96220410 + L1ME LINE L1 321 445 -5625 435 248 101 0 chr13 23524535 23524644 -96220254 + L1ME LINE L1 2667 2786 -3294 717 248 85 30 chr13 23524646 23524977 -96219921 + L1MC4 LINE L1 7689 8037 -5 232 168 65 194 chr13 23525653 23525808 -96219090 + LTR67 LTR ERVL 46 180 -377 2755 176 53 4 chr13 23526001 23526528 -96218370 - L1MB5 LINE L1 -50 6124 5572 413 165 12 12 chr13 23526529 23526614 -96218284 + LTR67 LTR ERVL 471 555 -2 239 328 0 0 chr13 23526616 23526677 -96218221 - MIR SINE MIR -113 149 89 2623 52 3 3 chr13 23527096 23527406 -96217492 - AluY SINE Alu -1 310 1 3327 179 104 20 chr13 23528723 23529434 -96215464 - MER21A LTR ERV1 -160 771 1 287 257 29 0 chr13 23530291 23530361 -96214537 + GA-rich Low_complexity Low_complexity 2 73 0 21 0 0 0 chr13 23531160 23531181 -96213717 + AT_rich Low_complexity Low_complexity 1 21 0 4127 160 48 9 chr13 23531187 23532433 -96212465 - L1MA8 LINE L1 -274 6017 4723 312 221 26 13 chr13 23532921 23532998 -96211900 + MER116 DNA Mariner 3 80 0 320 256 80 89 chr13 23533292 23533424 -96211474 - L1MB5 LINE L1 -847 5299 5167 1966 142 3 7 chr13 23533424 23533720 -96211178 - AluJb SINE Alu -15 297 3 320 256 80 89 chr13 23533720 23533900 -96210998 - L1MB5 LINE L1 -979 5167 4990 704 186 32 0 chr13 23534029 23534153 -96210745 + AluJb SINE Alu 166 293 -19 1493 114 5 9 chr13 23534251 23534462 -96210436 - AluSg/x SINE Alu -17 293 84 2063 135 0 3 chr13 23534462 23534750 -96210148 - AluSg SINE Alu -23 287 1 1110 289 111 18 chr13 23534769 23535245 -96209653 + L1ME3 LINE L1 5094 5667 -495 2219 101 7 14 chr13 23535245 23535541 -96209357 - AluSg SINE Alu -16 294 1 1110 289 111 18 chr13 23535541 23535855 -96209043 + L1ME3 LINE L1 5667 5951 -211 1316 253 88 12 chr13 23537031 23537530 -96207368 - L1MB5 LINE L1 -2337 3809 3273 2140 104 10 7 chr13 23537530 23537828 -96207070 - AluY SINE Alu -12 299 1 859 159 8 0 chr13 23537833 23537965 -96206933 - FLAM_C SINE Alu -10 133 1 263 257 73 28 chr13 23537970 23538079 -96206819 - MLT1F LTR MaLR -428 114 1 264 300 100 0 chr13 23538429 23538529 -96206369 - MIR SINE MIR -53 209 100 1440 112 5 0 chr13 23538918 23539115 -96205783 - AluSg/x SINE Alu -11 299 102 2293 93 3 17 chr13 23541602 23541904 -96202994 + AluSx SINE Alu 1 298 -14 1069 202 99 4 chr13 23542040 23542273 -96202625 + MLT2B3 LTR ERVL 279 533 -21 425 251 160 76 chr13 23542506 23542781 -96202117 - MER102b DNA MER1_type -27 314 17 204 128 0 26 chr13 23593808 23593847 -96151051 + (CGG)n Simple_repeat Simple_repeat 3 40 0 24 32 0 0 chr13 23594076 23594107 -96150791 + GC_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 23594453 23594475 -96150423 + GC_rich Low_complexity Low_complexity 1 22 0 200 188 0 0 chr13 23595904 23595936 -96148962 + polypyrimidine Low_complexity Low_complexity 1 32 0 201 39 0 0 chr13 23595941 23595967 -96148931 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 505 161 39 8 chr13 23596393 23596523 -96148375 + GA-rich Low_complexity Low_complexity 1 134 0 382 36 36 0 chr13 23596588 23596644 -96148254 + (ATG)n Simple_repeat Simple_repeat 3 60 0 297 89 0 0 chr13 23597679 23597724 -96147174 + (TG)n Simple_repeat Simple_repeat 2 46 0 225 224 37 19 chr13 23598218 23598325 -96146573 + (TA)n Simple_repeat Simple_repeat 2 110 0 1787 167 17 7 chr13 23599465 23599856 -96145042 - AluSx SINE Alu 0 395 2 1158 192 41 50 chr13 23600972 23601289 -96143609 - MLT1C LTR MaLR -153 314 1 1481 214 18 9 chr13 23602822 23603149 -96141749 - MER70B LTR ERVL -248 330 1 538 268 137 38 chr13 23603974 23604056 -96140842 - MLT1J1 LTR MaLR -5 441 369 2001 199 3 8 chr13 23604056 23604423 -96140475 - MLT1A1 LTR MaLR 0 365 1 538 268 137 38 chr13 23604423 23604770 -96140128 - MLT1J1 LTR MaLR -77 369 1 269 346 98 13 chr13 23606851 23607004 -96137894 - L3 LINE CR1 -95 1482 1317 685 235 82 6 chr13 23607017 23607187 -96137711 - MIR SINE MIR -16 246 64 2079 158 0 0 chr13 23607215 23607525 -96137373 - AluSx SINE Alu -2 310 1 838 267 55 40 chr13 23607548 23608070 -96136828 - MLT1H1 LTR MaLR 0 555 10 472 298 295 50 chr13 23608105 23608853 -96136045 - L3 LINE CR1 -283 1294 316 1841 172 0 17 chr13 23608853 23609149 -96135749 - AluJo SINE Alu -21 291 1 472 298 295 50 chr13 23609149 23609240 -96135658 - L3 LINE CR1 -1261 316 249 1939 149 3 3 chr13 23610629 23610911 -96133987 + AluSx SINE Alu 1 282 -30 228 385 126 13 chr13 23610928 23611229 -96133669 + L3b LINE CR1 1241 1575 -8 1772 179 14 8 chr13 23611877 23612234 -96132664 + MLT1B LTR MaLR 24 382 -8 2192 56 4 4 chr13 23612403 23612670 -96132228 + AluY SINE Alu 39 305 -6 319 316 58 52 chr13 23613871 23614026 -96130872 + L2 LINE L2 3112 3267 -5 1533 116 5 5 chr13 23614158 23614373 -96130525 + AluSp SINE Alu 93 307 -6 3858 171 21 39 chr13 23614390 23615144 -96129754 + MER21B LTR ERV1 101 841 -22 32 0 0 23 chr13 23615338 23615366 -96129532 + AT_rich Low_complexity Low_complexity 1 29 -13 2802 25 0 10 chr13 23615366 23615680 -96129218 + AluY SINE Alu 1 311 0 32 0 0 23 chr13 23615680 23615694 -96129204 + AT_rich Low_complexity Low_complexity 29 42 0 * 184 354 135 5 chr13 23615693 23615885 -96129013 - L2 LINE L2 -480 2834 2618 521 244 60 30 chr13 23617280 23617448 -96127450 + MLT1K LTR MaLR 412 584 -4 192 277 50 34 chr13 23617510 23617629 -96127269 + L2 LINE L2 1360 1480 -1834 1761 174 0 19 chr13 23617830 23618147 -96126751 + AluJo SINE Alu 1 311 -1 426 253 69 90 chr13 23619112 23619345 -96125553 - MLT1K LTR MaLR -4 584 357 824 136 8 0 chr13 23619415 23619547 -96125351 + FLAM_C SINE Alu 1 133 0 28 48 0 0 chr13 23621596 23621638 -96123260 + AT_rich Low_complexity Low_complexity 1 42 0 435 226 61 0 chr13 23623856 23623971 -96120927 - MIR SINE MIR 0 262 141 224 276 0 0 chr13 23623992 23624050 -96120848 + CT-rich Low_complexity Low_complexity 2 59 0 2650 166 6 32 chr13 23624450 23624496 -96120402 - L1MB1 LINE L1 0 6168 6122 2301 100 7 3 chr13 23624496 23624795 -96120103 - AluSx SINE Alu -10 302 3 2650 166 6 32 chr13 23624795 23625254 -96119644 - L1MB1 LINE L1 -46 6122 5676 8830 156 18 39 chr13 23625452 23626212 -96118686 - L1MB1 LINE L1 -769 5377 4603 2179 110 21 0 chr13 23626212 23626502 -96118396 - AluSx SINE Alu -16 296 1 8830 156 18 39 chr13 23626502 23627453 -96117445 - L1MB1 LINE L1 -1543 4603 3701 322 143 16 16 chr13 23627605 23627668 -96117230 - AluS SINE Alu -237 63 1 920 264 60 23 chr13 23628483 23628846 -96116052 + L1ME2 LINE L1 5785 6158 -6 363 309 47 7 chr13 23629155 23629304 -96115594 - MIR SINE MIR -43 219 65 568 135 0 10 chr13 23629860 23629956 -96114942 - FRAM SINE Alu -11 165 71 488 230 0 7 chr13 23629958 23630110 -96114788 + (TG)n Simple_repeat Simple_repeat 2 152 0 477 304 47 16 chr13 23630438 23630629 -96114269 - MIR SINE MIR -1 261 65 258 274 266 0 chr13 23630839 23630952 -96113946 - L2 LINE L2 -4 3268 3126 830 283 94 11 chr13 23632243 23632444 -96112454 - L2 LINE L2 -4 3309 3126 288 0 0 0 chr13 23632444 23632476 -96112422 + (TG)n Simple_repeat Simple_repeat 2 33 0 830 283 94 11 chr13 23632476 23632634 -96112264 - L2 LINE L2 -187 3126 2920 2108 166 5 27 chr13 23632697 23632878 -96112020 + MLT1A1 LTR MaLR 1 171 -194 2660 108 14 0 chr13 23632878 23633248 -96111650 - THE1C LTR MaLR 0 375 1 2108 166 5 27 chr13 23633248 23633439 -96111459 + MLT1A1 LTR MaLR 171 365 0 228 389 87 0 chr13 23634524 23634650 -96110248 + L2 LINE L2 3136 3272 0 1321 226 129 12 chr13 23634701 23635103 -96109795 + LTR2 LTR ERV1 1 449 0 21 0 0 0 chr13 23636159 23636180 -96108718 + AT_rich Low_complexity Low_complexity 1 21 0 2324 98 3 0 chr13 23636330 23636625 -96108273 - AluSq SINE Alu -15 298 3 258 212 45 15 chr13 23636647 23636713 -96108185 + L2 LINE L2 3246 3313 0 297 0 0 0 chr13 23637092 23637125 -96107773 + (TG)n Simple_repeat Simple_repeat 2 34 0 2317 78 0 0 chr13 23637125 23637401 -96107497 - AluY SINE Alu -20 291 16 3468 179 48 8 chr13 23638392 23639045 -96105853 - LTR58 LTR ERV1 0 679 1 726 227 164 54 chr13 23639081 23639416 -96105482 + MER93b LTR ERV1 2 373 0 1154 189 129 63 chr13 23640910 23641196 -96103702 + AluJo SINE Alu 8 312 0 1374 146 5 5 chr13 23641427 23641639 -96103259 + AluSx SINE Alu 1 212 -100 2143 104 0 4 chr13 23641669 23641990 -96102908 + AluSc SINE Alu 1 320 0 183 261 109 11 chr13 23642128 23642220 -96102678 - MIR SINE MIR -70 192 92 284 280 100 13 chr13 23642540 23642690 -96102208 + L2 LINE L2 3111 3273 -40 295 170 0 4 chr13 23643030 23643088 -96101810 + FRAM/FAM SINE Alu 9 51 -124 10655 190 12 12 chr13 23643197 23644954 -96099944 - L1PB1 LINE L1 0 6151 4385 216 0 0 0 chr13 23644954 23644978 -96099920 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 10655 190 12 12 chr13 23644978 23646437 -96098461 - L1PB1 LINE L1 -1766 4385 2927 2252 92 7 26 chr13 23646438 23646743 -96098155 - AluSc SINE Alu -10 299 1 787 170 0 99 chr13 23647132 23647344 -96097554 - L1MA4 LINE L1 0 6300 6110 1549 190 0 32 chr13 23647555 23647839 -96097059 + AluJo SINE Alu 1 275 -37 189 0 0 0 chr13 23647842 23647863 -96097035 + (TC)n Simple_repeat Simple_repeat 2 22 0 195 184 0 0 chr13 23647863 23647901 -96096997 + (TA)n Simple_repeat Simple_repeat 2 39 0 228 67 0 0 chr13 23647901 23647931 -96096967 + (CA)n Simple_repeat Simple_repeat 2 31 0 210 351 18 9 chr13 23648213 23648324 -96096574 + L2 LINE L2 2948 3059 -213 2007 102 56 30 chr13 23648697 23649000 -96095898 + AluY SINE Alu 1 311 0 1870 153 13 3 chr13 23649037 23649344 -96095554 + AluJb SINE Alu 1 310 -2 2181 152 8 0 chr13 23649600 23649956 -96094942 - L1MA5A LINE L1 -40 6257 5899 1205 144 24 5 chr13 23649956 23650164 -96094734 - LTR49 LTR ERV1 -383 212 1 282 242 74 21 chr13 23650512 23650607 -96094291 + LTR16A1 LTR ERVL 179 278 -179 2484 100 73 36 chr13 23650643 23651054 -96093844 + MSTC LTR MaLR 3 428 0 1145 264 105 87 chr13 23652628 23653322 -96091576 - MER21B LTR ERV1 -149 714 8 183 139 0 0 chr13 23655586 23655622 -96089276 + (CTG)n Simple_repeat Simple_repeat 1 36 0 205 271 0 0 chr13 23656790 23656838 -96088060 - L2 LINE L2 -4 3268 3221 221 211 88 0 chr13 23657037 23657094 -96087804 - MIR SINE MIR -109 153 92 2762 242 49 73 chr13 23657556 23658975 -96085923 + L1M1 LINE L1 18 2332 -5233 870 184 0 0 chr13 23659309 23659450 -96085448 + FRAM SINE Alu 10 150 -26 387 0 0 0 chr13 23659477 23659520 -96085378 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 43 0 0 chr13 23659519 23659542 -96085356 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 305 264 107 8 chr13 23660559 23660680 -96084218 - MIR3 SINE MIR -18 190 58 813 145 34 101 chr13 23660797 23661004 -96083894 - MER34C LTR ERV1 -33 552 360 619 164 10 0 chr13 23662188 23662292 -96082606 + FLAM_C SINE Alu 1 105 -38 3354 137 29 18 chr13 23662292 23662840 -96082058 - MER41C LTR ERV1 0 554 1 275 189 0 19 chr13 23662847 23662900 -96081998 + MER34B LTR ERV1 514 565 0 2557 212 18 21 chr13 23663313 23663917 -96080981 + L1MB7 LINE L1 4448 5049 -1097 246 157 118 0 chr13 23663916 23663967 -96080931 - L1M4 LINE L1 -1021 5125 5069 * 2696 194 50 6 chr13 23663979 23664747 -96080151 + L1MB7 LINE L1 5069 5904 -280 * 5649 113 14 3 chr13 23664744 23665636 -96079262 + L1MA3 LINE L1 5186 6087 -218 200 216 21 31 chr13 23666103 23666200 -96078698 + (TA)n Simple_repeat Simple_repeat 2 97 0 2331 95 10 0 chr13 23666422 23666726 -96078172 + AluSg SINE Alu 1 307 -3 501 62 0 0 chr13 23669117 23669182 -96075716 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 2364 83 3 26 chr13 23669184 23669497 -96075401 - AluY SINE Alu -5 306 1 2202 118 7 0 chr13 23669521 23669826 -96075072 - AluSx SINE Alu -5 307 1 360 257 208 20 chr13 23670467 23670669 -96074229 - L2 LINE L2 -526 2788 2549 554 197 171 0 chr13 23672401 23672553 -96072345 + MER45A DNA AcHobo 1 178 0 264 100 0 0 chr13 23672963 23673003 -96071895 + (T)n Simple_repeat Simple_repeat 1 40 0 1932 113 28 10 chr13 23673612 23673903 -96070995 - AluSx SINE Alu -16 296 1 562 248 9 0 chr13 23674226 23674335 -96070563 + MER81 DNA DNA 5 114 0 419 176 0 0 chr13 23674393 23674461 -96070437 + AluJ/FLAM SINE Alu 2 69 -243 348 318 85 31 chr13 23675977 23676106 -96068792 + L2 LINE L2 3137 3272 0 1103 165 0 6 chr13 23676270 23676446 -96068452 + AluJo SINE Alu 1 175 -137 3188 127 6 27 chr13 23676447 23676960 -96067938 + L1MC1 LINE L1 5375 5876 -457 21 36 0 0 chr13 23677511 23677539 -96067359 + AT_rich Low_complexity Low_complexity 1 28 0 2176 71 46 4 chr13 23677543 23677824 -96067074 - AluY SINE Alu -18 293 1 304 285 122 14 chr13 23677924 23678025 -96066873 + L1MC/D LINE L1 4076 4165 -1981 2035 214 13 5 chr13 23678025 23678418 -96066480 - MSTD LTR MaLR 0 396 1 304 285 122 14 chr13 23678418 23678537 -96066361 + L1MC/D LINE L1 4165 4320 -1826 2142 125 10 0 chr13 23678541 23678837 -96066061 + AluSx SINE Alu 1 299 -13 1860 287 95 34 chr13 23678944 23679478 -96065420 + L1M3c LINE L1 1046 1546 -4850 1939 170 0 0 chr13 23679478 23679767 -96065131 + AluJb SINE Alu 1 289 -23 1860 287 95 34 chr13 23679767 23679862 -96065036 + L1M3c LINE L1 1546 1634 -4762 2547 159 11 23 chr13 23679862 23680301 -96064597 - Tigger2a DNA MER2_type 0 434 1 1860 287 95 34 chr13 23680301 23680756 -96064142 + L1M3c LINE L1 1634 2060 -4336 2331 108 0 0 chr13 23680756 23681053 -96063845 - AluSx SINE Alu -15 297 1 1860 287 95 34 chr13 23681053 23681393 -96063505 + L1M3c LINE L1 2060 2519 -3877 5763 244 81 30 chr13 23681394 23681821 -96063077 + L1ME1 LINE L1 3100 3504 -2662 2262 90 0 50 chr13 23681821 23682142 -96062756 - AluSg SINE Alu -5 305 1 5763 244 81 30 chr13 23682142 23683214 -96061684 + L1ME1 LINE L1 3504 4519 -1647 2231 119 0 6 chr13 23683214 23683547 -96061351 + AluSg SINE Alu 1 310 0 5763 244 81 30 chr13 23683547 23684891 -96060007 + L1ME1 LINE L1 4519 6103 -63 2637 55 0 0 chr13 23684891 23685201 -96059697 - AluY SINE Alu -1 310 1 5763 244 81 30 chr13 23685201 23685269 -96059629 + L1ME1 LINE L1 6103 6166 0 750 292 97 39 chr13 23685357 23685843 -96059055 + LTR33 LTR ERVL 8 521 0 228 312 18 9 chr13 23685933 23686042 -96058856 + L1P LINE L1 4482 4591 -1555 247 286 98 31 chr13 23686216 23686440 -96058458 + L1MC/D LINE L1 4812 5050 -1096 1855 167 74 24 chr13 23686469 23686846 -96058052 - MSTD LTR MaLR 0 396 1 1136 195 80 58 chr13 23686869 23687182 -96057716 + MER2 DNA MER2_type 1 320 -25 1323 264 47 10 chr13 23687288 23687697 -96057201 + L1MC/D LINE L1 5270 5691 -747 362 245 64 107 chr13 23688314 23688547 -96056351 + MER65-int LTR ERV1 81 303 -4568 238 243 49 60 chr13 23688728 23688913 -96055985 - MER54A LTR ERVL -618 283 101 272 198 0 88 chr13 23688913 23689004 -96055894 + MER65-int LTR ERV1 656 738 -4133 1785 179 3 7 chr13 23690016 23690312 -96054586 + AluJo SINE Alu 1 295 -17 5134 112 11 3 chr13 23690425 23691178 -96053720 - L1PA13 LINE L1 0 6163 5405 1707 178 7 13 chr13 23692556 23692854 -96052044 + AluJo SINE Alu 1 296 -16 2153 102 0 7 chr13 23693998 23694307 -96050591 + AluSx SINE Alu 1 307 0 1125 168 0 5 chr13 23694318 23694508 -96050390 + L1PB4 LINE L1 5966 6154 -2 2143 100 42 0 chr13 23694899 23695188 -96049710 + AluSx SINE Alu 1 301 -11 6223 85 11 6 chr13 23695727 23696574 -96048324 - L1PA11 LINE L1 -1 6173 5323 1886 122 16 56 chr13 23697080 23697384 -96047514 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr13 23697384 23697405 -96047493 + AT_rich Low_complexity Low_complexity 1 21 0 2051 131 0 10 chr13 23697999 23698305 -96046593 + AluSx SINE Alu 1 303 -9 2443 85 7 3 chr13 23698561 23698868 -96046030 + AluSq SINE Alu 1 308 -5 189 107 0 0 chr13 23700180 23700208 -96044690 + (GGAGAA)n Simple_repeat Simple_repeat 3 30 0 45 0 0 0 chr13 23700587 23700632 -96044266 + AT_rich Low_complexity Low_complexity 1 45 0 1920 116 49 0 chr13 23700641 23700908 -96043990 + AluSx SINE Alu 1 280 -32 204 97 0 0 chr13 23700908 23700939 -96043959 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 243 222 0 0 chr13 23700988 23701042 -96043856 + L2 LINE L2 3213 3266 -6 2533 132 89 22 chr13 23701649 23702097 -96042801 + LTR64 LTR ERVK 1 478 -80 927 118 0 29 chr13 23702120 23702256 -96042642 - FLAM_C SINE Alu -1 132 1 1841 171 0 0 chr13 23702297 23702583 -96042315 - AluJb SINE Alu -26 286 1 9911 172 106 11 chr13 23702768 23705230 -96039668 + L1PBa LINE L1 647 3345 -3517 436 241 61 30 chr13 23705418 23705671 -96039227 + MLT1L LTR MaLR 312 611 -4 805 261 31 52 chr13 23706434 23706821 -96038077 - L1MC5 LINE L1 -36 7925 7547 1329 219 28 100 chr13 23706873 23707059 -96037839 - L1MC5 LINE L1 -729 7232 7034 2093 110 7 0 chr13 23707059 23707372 -96037526 + AluSx SINE Alu 1 315 0 1329 219 28 100 chr13 23707372 23707764 -96037134 - L1MC5 LINE L1 -927 7034 6695 349 275 53 8 chr13 23707904 23708035 -96036863 + MIR SINE MIR 67 203 -59 23 0 0 0 chr13 23708882 23708905 -96035993 + AT_rich Low_complexity Low_complexity 1 23 0 233 100 0 0 chr13 23709243 23709273 -96035625 - MLT2D LTR ERVL -5 510 481 1665 140 0 98 chr13 23709343 23709650 -96035248 + AluJb SINE Alu 1 277 -35 1693 148 98 0 chr13 23709681 23709999 -96034899 - MLT2D LTR ERVL -65 349 1 503 245 104 7 chr13 23710566 23710776 -96034122 + MLT1H LTR MaLR 1 281 -268 312 262 71 0 chr13 23710993 23711077 -96033821 + MLT1H LTR MaLR 466 555 0 2179 109 13 10 chr13 23711632 23711936 -96032962 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr13 23712569 23712591 -96032307 + AT_rich Low_complexity Low_complexity 1 22 0 1752 149 10 7 chr13 23712631 23712933 -96031965 - L1MC1 LINE L1 -1 6332 6030 1348 153 48 34 chr13 23713079 23713373 -96031525 + L1MB7 LINE L1 5887 6184 0 516 243 181 35 chr13 23713932 23714158 -96030740 + MLT1L LTR MaLR 8 266 -349 2354 252 40 43 chr13 23714643 23715326 -96029572 - L1ME3 LINE L1 -41 6121 5441 2258 122 3 0 chr13 23715326 23715637 -96029261 - AluSx SINE Alu 0 312 1 2354 252 40 43 chr13 23715637 23716131 -96028767 - L1ME3 LINE L1 -721 5441 4947 1379 239 46 46 chr13 23716157 23716356 -96028542 - L1ME3 LINE L1 -1279 4867 4669 2344 110 0 0 chr13 23716356 23716666 -96028232 - AluSx SINE Alu -2 310 1 1379 239 46 46 chr13 23716666 23716964 -96027934 - L1ME3 LINE L1 -1476 4670 4370 1696 225 75 58 chr13 23717005 23717114 -96027784 - L1ME1 LINE L1 -5 6161 6055 1865 111 12 0 chr13 23717114 23717357 -96027541 + AluSx SINE Alu 38 283 -29 184 80 0 0 chr13 23717357 23717382 -96027516 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 1696 225 75 58 chr13 23717382 23717857 -96027041 - L1ME1 LINE L1 -111 6055 5566 237 303 17 17 chr13 23717862 23717981 -96026917 - L1ME3 LINE L1 -1755 4391 4273 1256 162 81 0 chr13 23718245 23718479 -96026419 - AluSg SINE Alu -57 253 1 700 240 98 62 chr13 23720545 23720882 -96024016 + MLT1L LTR MaLR 1 349 -266 363 132 0 0 chr13 23721415 23721483 -96023415 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 1562 168 81 0 chr13 23721500 23721785 -96023113 - AluJo SINE Alu -4 308 1 2158 100 0 0 chr13 23722244 23722533 -96022365 - AluSg SINE Alu -16 294 6 2079 74 14 18 chr13 23723423 23723708 -96021190 + AluY SINE Alu 1 284 -27 270 56 0 0 chr13 23724523 23724559 -96020339 + (TA)n Simple_repeat Simple_repeat 2 37 0 844 257 141 27 chr13 23725302 23725714 -96019184 + MLT1C LTR MaLR 1 459 -8 235 397 7 0 chr13 23725730 23725866 -96019032 + L2 LINE L2 2232 2368 -946 2312 92 0 0 chr13 23725915 23726219 -96018679 + AluSq SINE Alu 1 304 -9 2513 43 0 0 chr13 23726410 23726711 -96018187 + AluY SINE Alu 1 301 -10 391 165 70 52 chr13 23727005 23727120 -96017778 - L1PA16 LINE L1 0 6166 6050 1065 197 19 57 chr13 23727312 23727601 -96017297 + L1P5 LINE L1 5441 5724 -430 708 121 0 0 chr13 23727702 23727801 -96017097 - MLT1A1 LTR MaLR -2 363 265 598 89 89 0 chr13 23727801 23727891 -96017007 + MER4A LTR ERV1 1 98 -566 1712 139 14 75 chr13 23727891 23728259 -96016639 + MER4A LTR ERV1 261 664 0 1208 242 11 0 chr13 23728259 23728523 -96016375 - MLT1A1 LTR MaLR -97 268 2 894 302 114 16 chr13 23729054 23729538 -96015360 + L1MC4a LINE L1 5296 5826 -1982 * 2388 145 17 2 chr13 23729535 23729943 -96014955 + L1MB3 LINE L1 5725 6138 -45 1961 124 0 10 chr13 23729946 23730244 -96014654 + AluSx SINE Alu 1 295 -17 2029 105 7 0 chr13 23730743 23731028 -96013870 + AluSx SINE Alu 1 287 -25 382 216 27 99 chr13 23731752 23731863 -96013035 - MER20 DNA MER1_type -116 103 1 389 273 116 8 chr13 23732109 23732230 -96012668 - MIR SINE MIR -79 183 50 565 231 37 15 chr13 23733254 23733388 -96011510 - MIR SINE MIR -77 185 49 2305 58 3 0 chr13 23733655 23733946 -96010952 - AluY SINE Alu 0 311 20 261 0 0 0 chr13 23734672 23734701 -96010197 + (TG)n Simple_repeat Simple_repeat 2 30 0 2189 106 0 3 chr13 23734750 23735053 -96009845 + AluSx SINE Alu 1 302 -10 220 347 0 13 chr13 23735077 23735152 -96009746 - L2 LINE L2 -36 3236 3163 211 196 0 39 chr13 23735179 23735230 -96009668 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 1455 167 0 4 chr13 23735601 23735852 -96009046 + AluSx SINE Alu 50 299 -13 1960 149 0 0 chr13 23736054 23736362 -96008536 - AluSx SINE Alu -4 308 1 700 282 25 0 chr13 23737775 23737938 -96006960 - MIR SINE MIR -49 213 47 186 322 17 43 chr13 23738838 23738892 -96006006 - L2 LINE L2 -38 3234 3180 2240 104 3 0 chr13 23738892 23739201 -96005697 - AluSp SINE Alu -3 310 1 186 322 17 43 chr13 23739201 23739261 -96005637 - L2 LINE L2 -92 3180 3123 283 267 91 3 chr13 23739363 23739467 -96005431 - Charlie8 DNA MER1_type -2290 127 2 25 31 0 0 chr13 23739634 23739666 -96005232 + AT_rich Low_complexity Low_complexity 1 32 0 289 113 0 29 chr13 23739666 23739731 -96005167 - Alu SINE Alu -19 283 247 1206 164 136 82 chr13 23739731 23739747 -96005151 - MSTD LTR MaLR -62 334 320 1886 190 64 11 chr13 23739747 23740121 -96004777 + MSTD LTR MaLR 3 396 0 1206 164 136 82 chr13 23740121 23740421 -96004477 - MSTD LTR MaLR -76 320 1 852 220 47 19 chr13 23740504 23740718 -96004180 + MIR SINE MIR 43 262 0 270 360 0 0 chr13 23741013 23741102 -96003796 - MER5A DNA MER1_type -83 106 18 218 274 68 27 chr13 23743403 23743476 -96001422 + MIR SINE MIR 127 202 -60 1972 103 0 62 chr13 23743504 23743825 -96001073 + AluSx SINE Alu 1 301 -11 298 350 13 38 chr13 23744263 23744420 -96000478 + MIR SINE MIR 50 202 -60 197 307 71 24 chr13 23744522 23744649 -96000249 + MIR SINE MIR 60 192 -70 972 165 6 6 chr13 23744839 23745015 -95999883 - FRAM SINE Alu 0 176 1 689 137 24 8 chr13 23746648 23746772 -95998126 + MER31B LTR ERV1 1 126 -340 * 718 133 147 7 chr13 23746749 23746899 -95997999 + MER31B LTR ERV1 243 413 -53 1970 153 80 28 chr13 23746909 23747293 -95997605 + MSTB1 LTR MaLR 7 410 -22 1680 95 4 9 chr13 23747293 23747524 -95997374 - MER30 DNA MER1_type 0 230 1 320 155 28 14 chr13 23747556 23747627 -95997271 + MER31B LTR ERV1 395 466 0 466 235 120 54 chr13 23747635 23748128 -95996770 - MLT1H1 LTR MaLR -29 566 4 1844 117 32 14 chr13 23748182 23748485 -95996413 + AluSx SINE Alu 5 312 0 510 198 18 0 chr13 23748587 23748698 -95996200 + L1MD3 LINE L1 6919 7031 -964 944 162 65 142 chr13 23748810 23749162 -95995736 + MER51C LTR ERV1 326 640 0 299 235 0 0 chr13 23749175 23749243 -95995655 + L1MC3 LINE L1 7029 7096 -689 325 265 31 10 chr13 23749244 23749342 -95995556 + MLT1F1 LTR MaLR 35 134 -433 2463 147 46 31 chr13 23749345 23749754 -95995144 + L1MC3 LINE L1 7205 7623 -162 2463 63 0 0 chr13 23749754 23750056 -95994842 + AluY SINE Alu 1 302 -9 2463 147 46 31 chr13 23750056 23750101 -95994797 + L1MC3 LINE L1 7623 7666 -119 1359 189 71 53 chr13 23750125 23750330 -95994568 - MER2 DNA MER2_type 0 344 129 1965 125 0 10 chr13 23750330 23750635 -95994263 + AluSx SINE Alu 11 312 0 1359 189 71 53 chr13 23750635 23750767 -95994131 - MER2 DNA MER2_type -215 129 1 2362 83 13 0 chr13 23804103 23804405 -95940493 + AluSq SINE Alu 2 307 -6 32 0 0 23 chr13 23806472 23806486 -95938412 + AT_rich Low_complexity Low_complexity 1 14 -28 1742 101 22 14 chr13 23806486 23806762 -95938136 - L1PB1 LINE L1 0 6151 5874 32 0 0 23 chr13 23806762 23806790 -95938108 + AT_rich Low_complexity Low_complexity 14 42 0 618 13 0 0 chr13 23806790 23806865 -95938033 - L1PA3 LINE L1 -4 6151 6077 335 87 48 164 chr13 23806865 23806929 -95937969 - L1PB1 LINE L1 -265 5886 5837 1801 117 59 38 chr13 23806929 23807219 -95937679 - AluSq SINE Alu -17 296 1 335 87 48 164 chr13 23807219 23807258 -95937640 - L1PB1 LINE L1 -314 5837 5795 342 67 0 0 chr13 23807259 23807304 -95937594 + (TA)n Simple_repeat Simple_repeat 2 46 0 219 69 0 0 chr13 23807306 23807335 -95937563 + (CA)n Simple_repeat Simple_repeat 1 29 0 245 182 18 0 chr13 23807444 23807499 -95937399 - L1ME LINE L1 -539 5582 5527 359 251 204 42 chr13 23807724 23807891 -95937007 + MIR SINE MIR 48 241 -21 543 322 94 5 chr13 23808527 23808729 -95936169 - MIR SINE MIR -12 250 31 606 246 104 38 chr13 23809635 23809846 -95935052 - MIR SINE MIR -21 241 17 2459 87 3 0 chr13 23809901 23810210 -95934688 + AluSp SINE Alu 1 310 -3 1596 110 200 0 chr13 23810404 23810704 -95934194 - MER46B DNA MER2_type -1 235 1 542 226 161 5 chr13 23810709 23810908 -95933990 - MLT1J LTR MaLR -246 265 36 390 219 85 37 chr13 23811023 23811187 -95933711 - L1MEd LINE L1 -5946 173 2 330 188 257 0 chr13 23811519 23811620 -95933278 + Charlie5 DNA MER1_type 1 127 -2485 * 924 231 89 0 chr13 23811617 23811916 -95932982 + Charlie5 DNA MER1_type 2234 2572 -52 676 207 8 8 chr13 23811916 23812037 -95932861 - FLAM_A SINE Alu -12 121 1 924 231 89 0 chr13 23812037 23812096 -95932802 + Charlie5 DNA MER1_type 2572 2624 0 657 289 92 9 chr13 23812773 23812991 -95931907 + MIR SINE MIR 26 261 -1 2826 164 68 83 chr13 23813450 23813590 -95931308 - L1MB7 LINE L1 -5 6179 6038 1588 132 8 0 chr13 23813590 23813825 -95931073 + AluSx SINE Alu 57 293 -19 1654 161 20 24 chr13 23813825 23814117 -95930781 - AluJo SINE Alu -21 291 1 2826 164 68 83 chr13 23814117 23814385 -95930513 - L1MB7 LINE L1 -145 6039 5769 2042 136 3 3 chr13 23814385 23814693 -95930205 - AluSx SINE Alu -1 311 4 2826 164 68 83 chr13 23814693 23815114 -95929784 - L1MB7 LINE L1 -415 5769 5360 676 293 64 69 chr13 23815153 23815251 -95929647 - L2 LINE L2 0 3313 3216 2050 149 0 0 chr13 23815251 23815559 -95929339 + AluJb SINE Alu 1 308 -4 676 293 64 69 chr13 23815559 23816057 -95928841 - L2 LINE L2 -97 3216 2621 1270 259 143 18 chr13 23816125 23816193 -95928705 - L2 LINE L2 -658 2656 2598 3131 161 9 33 chr13 23816193 23816637 -95928261 - MER41D LTR ERV1 0 557 129 2353 103 0 0 chr13 23816637 23816937 -95927961 - AluSx SINE Alu -12 300 1 3131 161 9 33 chr13 23816937 23817063 -95927835 - MER41D LTR ERV1 -428 129 1 1270 259 143 18 chr13 23817063 23817538 -95927360 - L2 LINE L2 -716 2598 2045 378 284 57 7 chr13 23817684 23817825 -95927073 + L1ME LINE L1 44 191 -5879 248 229 0 0 chr13 23817826 23817896 -95927002 + T-rich Low_complexity Low_complexity 1 70 0 1717 176 3 22 chr13 23817986 23818304 -95926594 + AluJb SINE Alu 1 312 0 1067 267 115 34 chr13 23818391 23818900 -95925998 + L1ME LINE L1 348 918 -5152 2217 92 3 0 chr13 23818900 23819183 -95925715 + AluSq SINE Alu 1 310 0 195 0 39 0 chr13 23819183 23819209 -95925689 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1067 267 115 34 chr13 23819209 23819315 -95925583 + L1ME LINE L1 918 1014 -5056 23 0 0 0 chr13 23819456 23819479 -95925419 + AT_rich Low_complexity Low_complexity 1 23 0 1416 269 77 32 chr13 23819860 23820702 -95924196 + L1ME LINE L1 988 1975 -4171 2407 90 7 0 chr13 23820702 23821003 -95923895 + AluSx SINE Alu 1 303 -9 1416 269 77 32 chr13 23821003 23821023 -95923875 + L1ME LINE L1 1975 1993 -4153 625 277 219 38 chr13 23821024 23821272 -95923626 - L2 LINE L2 -1782 1532 1330 2538 56 7 13 chr13 23821272 23821577 -95923321 - AluY SINE Alu -8 303 1 625 277 219 38 chr13 23821577 23821930 -95922968 - L2 LINE L2 -1984 1330 822 232 270 16 0 chr13 23821930 23821950 -95922948 + MER3 DNA MER1_type 27 47 -162 575 196 0 0 chr13 23821950 23822057 -95922841 - MER3 DNA MER1_type 0 209 103 2154 128 0 0 chr13 23822057 23822355 -95922543 - AluSq SINE Alu -14 299 2 503 262 40 0 chr13 23822781 23822930 -95921968 - MER112 DNA MER1_type -104 156 2 342 284 74 14 chr13 23822980 23823128 -95921770 - L1ME LINE L1 -616 5550 5394 1938 187 68 34 chr13 23823147 23823591 -95921307 + LTR2B LTR ERV1 32 490 0 436 244 78 125 chr13 23823593 23824083 -95920815 - L1ME LINE L1 -748 5398 4958 2078 119 3 0 chr13 23824083 23824411 -95920487 - AluSq SINE Alu 0 329 1 436 244 78 125 chr13 23824411 23824728 -95920170 - L1ME LINE L1 -1188 4958 4628 606 196 22 14 chr13 23824764 23824902 -95919996 - MER4C LTR ERV1 0 465 327 14696 48 2 0 chr13 23824903 23827530 -95917368 + L1PA5 LINE L1 3588 6216 0 631 278 14 43 chr13 23827545 23827653 -95917245 - L1ME LINE L1 -1842 4304 4194 2294 108 7 0 chr13 23827653 23827949 -95916949 + AluSp SINE Alu 1 298 -15 631 278 14 43 chr13 23827949 23828117 -95916781 - L1ME LINE L1 -1952 4194 4036 310 299 0 0 chr13 23828127 23828214 -95916684 - L1MC4 LINE L1 -1339 6703 6617 1908 130 17 23 chr13 23828214 23828513 -95916385 - AluSc SINE Alu -12 297 1 420 287 72 34 chr13 23828526 23828763 -95916135 - L1ME LINE L1 -2130 4016 3771 704 269 58 42 chr13 23828792 23829219 -95915679 - L1ME LINE L1 -2899 3247 2814 2230 117 0 0 chr13 23829759 23830059 -95914839 - AluSx SINE Alu -12 300 1 1302 191 41 32 chr13 23830059 23830404 -95914494 - L1M4 LINE L1 -1100 5046 4699 1123 241 119 17 chr13 23830535 23830879 -95914019 + MLT1G1 LTR MaLR 3 381 -214 2456 85 0 3 chr13 23831111 23831417 -95913481 + AluSc SINE Alu 1 305 -4 1842 176 0 0 chr13 23831717 23832006 -95912892 + AluJb SINE Alu 4 292 -20 410 310 54 47 chr13 23832082 23832340 -95912558 + L3b LINE CR1 1190 1449 -134 195 42 0 0 chr13 23833794 23833818 -95911080 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 691 116 0 0 chr13 23833822 23833917 -95910981 - AluSg/x SINE Alu -35 277 183 2304 93 7 0 chr13 23834017 23834318 -95910580 + AluSq SINE Alu 11 313 0 194 138 0 0 chr13 23834640 23834669 -95910229 + MIR SINE MIR 86 114 -94 513 136 0 0 chr13 23834693 23834796 -95910102 + (TG)n Simple_repeat Simple_repeat 1 103 0 25 75 0 0 chr13 23835285 23835338 -95909560 + GC_rich Low_complexity Low_complexity 1 53 0 219 175 0 35 chr13 23835626 23835683 -95909215 + (CGGGG)n Simple_repeat Simple_repeat 4 58 0 339 203 0 0 chr13 23836194 23836268 -95908630 + (CA)n Simple_repeat Simple_repeat 2 75 0 773 275 102 20 chr13 23836757 23837200 -95907698 - L2 LINE L2 -612 2702 2224 636 190 41 24 chr13 23837200 23837371 -95907527 + MER45A DNA AcHobo 1 174 -4 1008 244 81 21 chr13 23837395 23837830 -95907068 - L2 LINE L2 -1154 2160 1700 309 262 83 14 chr13 23837843 23838052 -95906846 - L2 LINE L2 -2761 553 240 355 230 110 10 chr13 23838536 23838636 -95906262 - L2 LINE L2 -13 3300 3191 1313 92 6 6 chr13 23838858 23839032 -95905866 - AluSc SINE Alu -126 183 10 253 295 103 0 chr13 23839227 23839305 -95905593 - MIR3 SINE MIR -15 193 108 1754 161 33 4 chr13 23840688 23840997 -95903901 + AluSx SINE Alu 1 317 0 1921 143 20 7 chr13 23841007 23841301 -95903597 + AluJo SINE Alu 1 298 -14 217 235 39 0 chr13 23843248 23843299 -95901599 - L2 LINE L2 -680 2634 2582 1240 197 55 3 chr13 23843555 23843845 -95901053 + MER33 DNA MER1_type 11 315 -9 211 272 80 74 chr13 23843890 23844052 -95900846 - MIR3 SINE MIR -11 197 35 4769 132 13 9 chr13 23845169 23845922 -95898976 - L1MC1 LINE L1 -246 6087 5332 2534 73 0 0 chr13 23845922 23846225 -95898673 - AluY SINE Alu -8 303 1 1770 88 0 0 chr13 23846225 23846442 -95898456 - AluSc SINE Alu -20 289 73 978 69 0 0 chr13 23846444 23846560 -95898338 - AluSc SINE Alu -180 129 14 983 204 13 34 chr13 23846561 23846796 -95898102 - L1MC1 LINE L1 -816 5330 5101 248 269 78 91 chr13 23847166 23847978 -95896920 - L1MDa LINE L1 -856 2045 1285 541 304 57 0 chr13 23848474 23848668 -95896230 + MIR SINE MIR 37 241 -21 24 77 0 0 chr13 23848676 23848728 -95896170 + AT_rich Low_complexity Low_complexity 1 52 0 1290 178 5 5 chr13 23848864 23849077 -95895821 - AluJb SINE Alu -13 299 87 2136 104 10 13 chr13 23849087 23849386 -95895512 - AluSx SINE Alu -14 298 1 2307 57 0 4 chr13 23849885 23850195 -95894703 + AluY SINE Alu 1 309 0 2229 115 3 0 chr13 23850952 23851247 -95893651 + AluSx SINE Alu 1 296 -16 313 134 15 15 chr13 23851334 23851401 -95893497 + GA-rich Low_complexity Low_complexity 3 69 0 1947 191 70 27 chr13 23851489 23851929 -95892969 - LTR2B LTR ERV1 0 490 32 186 333 14 92 chr13 23852836 23852977 -95891921 - L2 LINE L2 -10 3262 3133 2112 117 3 10 chr13 23853145 23853464 -95891434 - AluSx SINE Alu 0 312 1 1516 189 42 95 chr13 23853492 23853818 -95891080 - L1ME1 LINE L1 -6 6160 5861 2280 102 17 0 chr13 23853818 23854111 -95890787 + AluSx SINE Alu 1 298 -14 1516 189 42 95 chr13 23854111 23854217 -95890681 - L1ME1 LINE L1 -305 5861 5751 200 200 18 0 chr13 23854498 23854553 -95890345 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 197 305 86 47 chr13 23854567 23854695 -95890203 - L2 LINE L2 -2 3270 3138 3428 121 74 3 chr13 23855395 23855965 -95888933 + LTR24C LTR ERV1 1 610 -25 830 184 0 0 chr13 23855965 23856106 -95888792 + FLAM_A SINE Alu 1 141 -1 311 53 0 0 chr13 23856108 23856146 -95888752 + LTR24C LTR ERV1 598 635 0 1545 167 108 7 chr13 23856304 23856573 -95888325 - AluJo SINE Alu -16 296 1 2378 106 0 0 chr13 23856584 23856886 -95888012 - AluSx SINE Alu -10 302 1 207 185 19 37 chr13 23857571 23857625 -95887273 + A-rich Low_complexity Low_complexity 4 56 0 1091 196 47 120 chr13 23857785 23858360 -95886538 + MER34B LTR ERV1 1 521 -21 3980 124 38 11 chr13 23858544 23858764 -95886134 - MER39B LTR ERV1 0 653 440 1468 189 0 4 chr13 23858764 23859007 -95885891 - AluJo SINE Alu -70 242 1 2207 114 7 0 chr13 23859014 23859312 -95885586 - AluSc SINE Alu -9 300 1 3980 124 38 11 chr13 23859312 23859718 -95885180 - MER39B LTR ERV1 -218 435 2 849 192 33 33 chr13 23860001 23860183 -95884715 - MER70A LTR ERVL -16 456 275 976 178 31 21 chr13 23860229 23860420 -95884478 - MER70B LTR ERVL -385 193 1 6007 118 16 3 chr13 23860784 23861676 -95883222 - MER4D LTR ERV1 0 903 1 198 256 178 11 chr13 23861726 23861816 -95883082 + L2 LINE L2 3206 3310 -3 896 199 21 31 chr13 23862341 23862532 -95882366 - MER5A DNA MER1_type 0 189 1 2759 19 0 13 chr13 23862562 23862872 -95882026 - AluYa5 SINE Alu -5 306 1 741 202 0 11 chr13 23862877 23863141 -95881757 + CT-rich Low_complexity Low_complexity 1 261 0 1446 155 4 13 chr13 23863154 23863393 -95881505 - AluJo SINE Alu -73 239 3 1150 132 20 0 chr13 23863542 23863739 -95881159 - L1MA4A LINE L1 0 6303 6103 1413 142 18 0 chr13 23864822 23865041 -95879857 - MER44D DNA MER2_type -14 591 314 808 209 14 0 chr13 23865041 23865189 -95879709 - FRAM SINE Alu -26 150 1 1822 189 12 16 chr13 23865190 23865512 -95879386 - MER44D DNA MER2_type -377 328 8 1355 214 16 43 chr13 23865834 23865953 -95878945 + MLT1A1 LTR MaLR 53 174 -191 1719 207 8 40 chr13 23865953 23866330 -95878568 - MLT1A1 LTR MaLR 0 365 1 1355 214 16 43 chr13 23866330 23866532 -95878366 + MLT1A1 LTR MaLR 174 365 0 530 367 96 0 chr13 23867144 23867384 -95877514 - L2 LINE L2 0 3272 3010 375 313 151 20 chr13 23867712 23868443 -95876455 - L2 LINE L2 -731 2583 1758 261 83 0 0 chr13 23869122 23869158 -95875740 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2215 156 85 16 chr13 23869256 23869679 -95875219 - LTR47A LTR ERVL 0 452 1 213 200 21 116 chr13 23869717 23869812 -95875086 - L2 LINE L2 -181 3091 3006 1303 62 0 0 chr13 23871088 23871249 -95873649 + L1PA8 LINE L1 5998 6158 -14 2228 96 3 3 chr13 23871283 23871574 -95873324 + AluSc SINE Alu 1 291 -18 180 200 0 0 chr13 23873112 23873157 -95871741 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 1148 129 0 0 chr13 23873184 23873339 -95871559 - AluSq SINE Alu -158 155 1 579 222 44 39 chr13 23873339 23873519 -95871379 - L1M4 LINE L1 -1100 5046 4866 206 372 39 74 chr13 23873750 23874008 -95870890 + L2 LINE L2 2992 3240 -32 186 167 0 0 chr13 23875183 23875219 -95869679 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 2162 100 14 17 chr13 23876315 23876606 -95868292 - AluSx SINE Alu -22 290 1 2055 114 0 0 chr13 23876758 23877038 -95867860 - AluSq SINE Alu -1 312 33 237 313 61 10 chr13 23877508 23877607 -95867291 - MIR3 SINE MIR -10 198 95 2354 102 0 3 chr13 23877675 23877980 -95866918 - AluSx SINE Alu -8 304 1 751 295 119 28 chr13 23878726 23879325 -95865573 + L2 LINE L2 2420 3142 -171 1687 196 7 0 chr13 23879325 23879616 -95865282 - AluJo SINE Alu -19 293 1 751 295 119 28 chr13 23879616 23879728 -95865170 + L2 LINE L2 3142 3242 -71 192 360 13 0 chr13 23880884 23880959 -95863939 + MIR3 SINE MIR 95 170 -38 294 172 0 17 chr13 23881149 23881207 -95863691 - MER5A DNA MER1_type -78 111 55 1172 216 164 19 chr13 23881949 23882320 -95862578 - LTR37A LTR ERV1 0 426 2 201 175 0 0 chr13 23882538 23882578 -95862320 + (TG)n Simple_repeat Simple_repeat 1 40 0 646 189 57 39 chr13 23882802 23882984 -95861914 - MER39 LTR ERV1 0 684 399 906 114 0 0 chr13 23884071 23884202 -95860696 + L1PA10 LINE L1 6028 6158 -10 1719 186 3 0 chr13 23884831 23885121 -95859777 - AluJo SINE Alu -21 291 1 2619 139 11 18 chr13 23886101 23886547 -95858351 - MER65A LTR ERV1 -1 444 2 364 284 129 40 chr13 23886694 23887235 -95857663 - L1MC4a LINE L1 -599 5575 5348 2209 131 0 0 chr13 23888163 23888461 -95856437 + AluSq SINE Alu 1 298 -15 391 148 0 0 chr13 23888884 23888945 -95855953 - L1MC1 LINE L1 -395 5938 5878 237 27 0 0 chr13 23888950 23888987 -95855911 - Alu SINE Alu -1 298 262 1131 141 5 44 chr13 23889006 23889060 -95855838 - L1MC1 LINE L1 -395 5938 5883 2457 76 0 7 chr13 23889060 23889364 -95855534 - AluY SINE Alu -9 302 1 1131 141 5 44 chr13 23889364 23889515 -95855383 - L1MC1 LINE L1 -450 5883 5741 * 1660 176 25 41 chr13 23889496 23889596 -95855302 + L1MC2 LINE L1 5917 6017 -327 2221 154 65 12 chr13 23889596 23889999 -95854899 - MSTB LTR MaLR 0 426 3 1660 176 25 41 chr13 23889999 23890149 -95854749 + L1MC2 LINE L1 6017 6168 -176 2018 134 0 11 chr13 23890149 23890433 -95854465 + AluSx SINE Alu 1 281 -31 204 40 0 0 chr13 23890438 23890463 -95854435 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1660 176 25 41 chr13 23890463 23890568 -95854330 + L1MC2 LINE L1 6172 6273 -71 3154 95 71 11 chr13 23890589 23891040 -95853858 + MER1A DNA MER1_type 51 528 -1 233 180 20 0 chr13 23891041 23891091 -95853807 + L1MC2 LINE L1 6270 6320 -24 2190 125 0 0 chr13 23891102 23891397 -95853501 + AluSc SINE Alu 1 295 -14 1738 158 50 0 chr13 23891404 23891682 -95853216 + AluJb SINE Alu 1 292 -20 23 33 0 0 chr13 23891687 23891717 -95853181 + AT_rich Low_complexity Low_complexity 1 30 0 2158 121 0 9 chr13 23892574 23892889 -95852009 + AluSq SINE Alu 1 312 -1 213 290 14 0 chr13 23893617 23893686 -95851212 - L2 LINE L2 -994 2320 2251 213 272 126 46 chr13 23893777 23894016 -95850882 - L2 LINE L2 -1232 2082 1825 2183 117 17 0 chr13 23894087 23894386 -95850512 - AluSx SINE Alu -8 304 1 285 98 0 0 chr13 23894484 23894525 -95850373 + (CA)n Simple_repeat Simple_repeat 2 42 0 2342 93 6 3 chr13 23894630 23894941 -95849957 - AluSp SINE Alu -1 312 1 1881 188 22 5 chr13 23895277 23895644 -95849254 - L1MB7 LINE L1 -67 6117 5745 1938 149 0 3 chr13 23896754 23897055 -95847843 - AluJo SINE Alu 0 312 13 2305 173 44 2 chr13 23897189 23897618 -95847280 + L1PB4 LINE L1 5710 6156 0 2062 139 0 16 chr13 23897825 23898142 -95846756 - AluSx SINE Alu 0 312 1 2439 71 10 0 chr13 23898616 23898912 -95845986 - AluSq SINE Alu -14 299 1 669 56 0 0 chr13 23899406 23899496 -95845402 + (TG)n Simple_repeat Simple_repeat 2 91 0 5768 116 18 13 chr13 23899611 23900273 -95844625 - L1PA16 LINE L1 -9 6157 5489 2013 146 7 3 chr13 23900273 23900568 -95844330 - AluJb SINE Alu -16 296 1 5768 116 18 13 chr13 23900568 23900756 -95844142 - L1PA16 LINE L1 -677 5489 5303 1828 154 17 7 chr13 23901854 23902152 -95842746 + AluJo SINE Alu 2 302 -10 205 26 53 26 chr13 23902157 23902195 -95842703 + (GAAAA)n Simple_repeat Simple_repeat 5 43 0 1685 164 34 20 chr13 23903120 23903412 -95841486 + AluJo SINE Alu 1 296 -16 4472 144 64 53 chr13 23905225 23905903 -95838995 - L1MB3 LINE L1 -2 6181 5493 1572 171 28 21 chr13 23905903 23906190 -95838708 - AluJo SINE Alu -8 304 16 4472 144 64 53 chr13 23906190 23906617 -95838281 - L1MB3 LINE L1 -690 5493 5072 640 238 15 40 chr13 23907164 23907366 -95837532 + L2 LINE L2 3117 3313 0 2167 218 134 46 chr13 23907450 23908130 -95836768 - L1ME3 LINE L1 -30 6201 5411 1992 127 29 0 chr13 23908130 23908429 -95836469 - AluSx SINE Alu 0 307 1 2167 218 134 46 chr13 23908429 23908719 -95836179 - L1ME3 LINE L1 -820 5411 5148 840 212 0 0 chr13 23910338 23910511 -95834387 - AluJb SINE Alu 0 309 137 1460 108 21 21 chr13 23910754 23910892 -95834006 - L1MA4 LINE L1 0 6300 6160 2491 199 107 60 chr13 23910892 23911681 -95833217 - LTR1B LTR ERV1 0 826 1 1460 108 21 21 chr13 23911681 23911783 -95833115 - L1MA4 LINE L1 -139 6161 6060 240 306 87 27 chr13 23912014 23912137 -95832761 - L1ME LINE L1 -224 5897 5758 2130 116 0 47 chr13 23912137 23912456 -95832442 - AluSx SINE Alu -8 304 1 240 306 87 27 chr13 23912456 23912515 -95832383 - L1ME LINE L1 -363 5758 5704 1848 236 142 12 chr13 23912561 23913314 -95831584 - L1ME3 LINE L1 -2928 3287 2437 5233 78 10 3 chr13 23913315 23914017 -95830881 - L1PA13 LINE L1 -3 6160 5454 198 0 0 0 chr13 23914020 23914042 -95830856 + (TG)n Simple_repeat Simple_repeat 1 22 0 2497 46 0 0 chr13 23914042 23914322 -95830576 - AluY SINE Alu -31 280 1 592 169 0 0 chr13 23914324 23914413 -95830485 - AluJ/FLAM SINE Alu -222 90 2 787 262 70 23 chr13 23914433 23914777 -95830121 - L1ME3 LINE L1 -5015 1381 1022 605 321 15 19 chr13 23914771 23915033 -95829865 - L1ME3 LINE L1 -6100 296 36 * 2445 80 3 0 chr13 23915344 23915646 -95829252 - AluY SINE Alu -8 303 1 2073 122 7 0 chr13 23916307 23916601 -95828297 + AluSx SINE Alu 1 296 -16 2104 102 4 4 chr13 23916617 23916891 -95828007 - AluSq SINE Alu -11 302 29 427 337 10 15 chr13 23917860 23918059 -95826839 - LTR16B LTR ERVL -9 455 258 2454 76 0 0 chr13 23918135 23918436 -95826462 + AluSg SINE Alu 1 301 -9 1630 110 9 0 chr13 23920368 23920596 -95824302 + MER30 DNA MER1_type 1 230 0 369 299 7 28 chr13 23920948 23921092 -95823806 + MIR SINE MIR 81 221 -41 637 188 8 16 chr13 23921879 23922007 -95822891 - FLAM_A SINE Alu -6 127 1 564 309 127 16 chr13 23922895 23923335 -95821563 - L2 LINE L2 0 3313 2825 2175 111 4 0 chr13 23923413 23923727 -95821171 + AluSx SINE Alu 1 315 0 333 118 0 0 chr13 23925325 23925376 -95819522 + (GGA)n Simple_repeat Simple_repeat 3 53 0 451 206 22 0 chr13 23925376 23925468 -95819430 + MER58C DNA MER1_type 122 215 0 224 232 36 0 chr13 23925487 23925543 -95819355 - MIR SINE MIR -66 142 85 1233 262 83 101 chr13 23925697 23926419 -95818479 - MER21B LTR ERV1 -149 714 6 23 68 0 0 chr13 23926903 23926947 -95817951 + AT_rich Low_complexity Low_complexity 1 44 0 180 0 0 0 chr13 23927944 23927964 -95816934 + (A)n Simple_repeat Simple_repeat 1 20 0 295 243 54 72 chr13 23928303 23928414 -95816484 - L2 LINE L2 0 3313 3205 941 134 0 12 chr13 23929163 23929327 -95815571 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 841 125 0 8 chr13 23929328 23929448 -95815450 - FLAM_C SINE Alu -24 119 1 2352 48 10 3 chr13 23931080 23931374 -95813524 - AluY SINE Alu -15 296 1 201 108 0 0 chr13 23932280 23932317 -95812581 + (CGGGGG)n Simple_repeat Simple_repeat 3 39 0 26 30 0 0 chr13 23932400 23932433 -95812465 + GC_rich Low_complexity Low_complexity 1 33 0 365 323 0 0 chr13 23933252 23933351 -95811547 - MIR SINE MIR -127 135 37 3349 151 53 67 chr13 23933896 23934598 -95810300 + L1MB7 LINE L1 5433 6124 -60 2153 107 28 0 chr13 23934877 23935166 -95809732 - AluSx SINE Alu -15 297 1 2260 123 0 0 chr13 23935635 23935935 -95808963 + AluSx SINE Alu 1 300 -12 26 64 0 0 chr13 23936111 23936158 -95808740 + AT_rich Low_complexity Low_complexity 1 47 0 1088 205 31 5 chr13 23937066 23937290 -95807608 - L1MB8 LINE L1 -39 6139 5910 21 36 0 0 chr13 23937351 23937379 -95807519 + AT_rich Low_complexity Low_complexity 1 28 0 2528 75 0 3 chr13 23937803 23938110 -95806788 + AluY SINE Alu 1 306 -5 5712 116 0 15 chr13 23938224 23938371 -95806527 - L1PA14 LINE L1 0 6161 6013 1978 97 38 56 chr13 23938371 23938659 -95806239 - AluSx SINE Alu -29 283 1 5712 116 0 15 chr13 23938659 23939553 -95805345 - L1PA14 LINE L1 -148 6013 5144 2021 130 0 13 chr13 23939813 23940112 -95804786 - AluSx SINE Alu -16 296 2 1183 210 47 5 chr13 23940879 23941175 -95803723 + L1MD3 LINE L1 7481 7967 -15 2318 101 0 0 chr13 23941178 23941474 -95803424 + AluSq SINE Alu 1 296 -17 277 174 64 92 chr13 23942334 23942379 -95802519 - Charlie7 DNA MER1_type 0 2612 2567 2182 93 21 3 chr13 23942379 23942669 -95802229 - AluSc SINE Alu -14 295 1 277 174 64 92 chr13 23942669 23942732 -95802166 - Charlie7 DNA MER1_type -45 2567 2507 * 713 266 35 31 chr13 23942726 23943015 -95801883 - Charlie7 DNA MER1_type -1923 689 400 7411 59 8 38 chr13 23943016 23944725 -95800173 - SVA Other Other -683 1383 1 291 297 79 7 chr13 23944801 23944979 -95799919 + MLT1J LTR MaLR 43 270 -241 421 278 42 0 chr13 23944988 23945132 -95799766 - Charlie7 DNA MER1_type -2209 403 254 1487 154 41 110 chr13 23945139 23945529 -95799369 - MLT1A2 LTR MaLR -11 363 1 295 268 143 0 chr13 23945572 23945684 -95799214 - Charlie7 DNA MER1_type -2429 183 56 189 262 8 71 chr13 23945958 23946084 -95798814 - L2 LINE L2 -250 3022 2905 2238 114 16 50 chr13 23946115 23946492 -95798406 + THE1B LTR MaLR 1 364 0 877 157 8 0 chr13 23947144 23947278 -95797620 + AluJo SINE Alu 3 137 -175 198 0 0 0 chr13 23948018 23948040 -95796858 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2067 122 10 7 chr13 23948044 23948339 -95796559 - AluSq SINE Alu -16 297 2 1821 151 3 14 chr13 23950206 23950498 -95794400 + AluJb SINE Alu 1 289 -23 263 299 62 0 chr13 23950973 23951070 -95793828 + MIR SINE MIR 151 253 -9 198 103 0 0 chr13 23951353 23951382 -95793516 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 236 353 58 13 chr13 23951444 23951600 -95793298 + MIR SINE MIR 56 218 -44 1292 174 20 4 chr13 23951680 23951927 -95792971 - L1MB2 LINE L1 0 6171 5921 1498 152 144 0 chr13 23951984 23952240 -95792658 + AluSx SINE Alu 3 295 -17 244 233 55 27 chr13 23953977 23954050 -95790848 - MIR SINE MIR -115 147 73 395 216 237 0 chr13 23954076 23954173 -95790725 + MER97b DNA MER1_type? 27 146 -907 1051 224 82 30 chr13 23954241 23954555 -95790343 - AluJo SINE Alu 0 341 14 491 279 54 44 chr13 23954696 23954900 -95789998 + MER97c DNA MER1_type? 274 479 -611 759 176 7 7 chr13 23954914 23955050 -95789848 - AluJo SINE Alu -175 137 2 1216 209 120 9 chr13 23955051 23955400 -95789498 + MER97b DNA MER1_type? 472 859 -194 363 270 40 62 chr13 23955510 23955579 -95789319 + MER97c DNA MER1_type? 867 936 -154 2184 123 3 0 chr13 23955579 23955879 -95789019 - AluSx SINE Alu -11 301 1 363 270 40 62 chr13 23955879 23956035 -95788863 + MER97c DNA MER1_type? 936 1087 -3 194 354 25 0 chr13 23956170 23956249 -95788649 + MIR3 SINE MIR 119 199 -9 1623 172 0 29 chr13 23958974 23959282 -95785616 - AluJo SINE Alu -5 307 9 2129 75 3 38 chr13 23961194 23961509 -95783389 + AluY SINE Alu 1 305 0 370 250 318 5 chr13 23962233 23962425 -95782473 - MIR SINE MIR -3 259 8 190 286 66 33 chr13 23962971 23963062 -95781836 + MIR SINE MIR 50 143 -119 1622 158 44 11 chr13 23964117 23964390 -95780508 - AluJb SINE Alu -20 292 11 1779 223 98 25 chr13 23964655 23965175 -95779723 - MER74A LTR ERVL 0 558 1 195 129 0 0 chr13 23967935 23967966 -95776932 + (T)n Simple_repeat Simple_repeat 1 31 0 2934 7 0 0 chr13 23967982 23968291 -95776607 + AluYb8 SINE Alu 1 309 -9 313 136 0 0 chr13 23970234 23970278 -95774620 - Alu SINE Alu -256 44 1 * 859 133 193 6 chr13 23970278 23970439 -95774459 - MER46B DNA MER2_type -169 67 1 319 196 0 0 chr13 23970391 23970447 -95774451 + MER46A DNA MER2_type 97 152 -84 * 204 40 0 0 chr13 23970461 23970486 -95774412 + (TA)n Simple_repeat Simple_repeat 2 26 0 315 0 0 0 chr13 23970743 23970778 -95774120 + (TG)n Simple_repeat Simple_repeat 2 36 0 2230 64 4 0 chr13 23970925 23971192 -95773706 - AluY SINE Alu -9 302 35 606 264 68 23 chr13 23971199 23971506 -95773392 - HAL1 LINE L1 -1126 1381 1061 283 169 108 0 chr13 23971581 23971646 -95773252 - HAL1 LINE L1 -1608 899 828 3966 192 23 12 chr13 23971653 23972429 -95772469 - L1MB4 LINE L1 0 6180 5396 619 299 58 58 chr13 23972418 23972990 -95771908 - HAL1 LINE L1 -1653 854 283 * 2264 106 3 0 chr13 23973169 23973462 -95771436 + AluSq SINE Alu 1 294 -19 28 29 0 0 chr13 23974712 23974747 -95770151 + AT_rich Low_complexity Low_complexity 1 35 0 5643 115 20 53 chr13 23974766 23975883 -95769015 - L1PB1 LINE L1 -21 6130 5058 1388 199 24 10 chr13 23978537 23978833 -95766065 + L1MB4 LINE L1 5880 6179 -1 220 209 0 0 chr13 23978851 23978894 -95766004 + (CATA)n Simple_repeat Simple_repeat 2 44 0 331 261 106 49 chr13 23979678 23979904 -95764994 + L1 LINE L1 4177 4415 -1731 23 0 0 0 chr13 23980084 23980107 -95764791 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 23982166 23982191 -95762707 + (TC)n Simple_repeat Simple_repeat 2 26 0 2105 108 11 14 chr13 23982191 23982478 -95762420 - AluSx SINE Alu -26 286 1 230 255 53 94 chr13 23984003 23984120 -95760778 - MIR SINE MIR -84 124 10 481 259 40 65 chr13 23984421 23984742 -95760156 - HAL1 LINE L1 -1351 1156 844 771 235 108 110 chr13 23985223 23985669 -95759229 + MLT2B2 LTR ERVL 1 445 -19 253 250 44 0 chr13 23986159 23986227 -95758671 + L1ME3A LINE L1 6072 6142 -28 2275 120 0 0 chr13 23987097 23987406 -95757492 - AluSx SINE Alu -3 309 1 26 0 0 0 chr13 23987408 23987434 -95757464 + AT_rich Low_complexity Low_complexity 1 26 0 743 151 0 0 chr13 23987445 23987551 -95757347 + U6 snRNA snRNA 2 107 0 871 315 44 46 chr13 23989241 23989839 -95755059 + L2 LINE L2 2711 3302 -11 13777 169 38 62 chr13 23990244 23990917 -95753981 - L1MA4 LINE L1 -12 6470 5782 2334 81 3 44 chr13 23990917 23991238 -95753660 - AluY SINE Alu -3 308 1 13777 169 38 62 chr13 23991238 23992039 -95752859 - L1MA4 LINE L1 -700 5782 4963 482 184 69 0 chr13 23992039 23992126 -95752772 - FLAM SINE Alu -12 131 39 13777 169 38 62 chr13 23992126 23993167 -95751731 - L1MA4 LINE L1 -1519 4963 3899 1934 146 24 3 chr13 23993167 23993462 -95751436 + AluSx SINE Alu 1 301 -11 13777 169 38 62 chr13 23993462 23993598 -95751300 - L1MA4 LINE L1 -2583 3899 3761 875 175 18 24 chr13 23993598 23993764 -95751134 - AluJb SINE Alu -13 299 135 13777 169 38 62 chr13 23993764 23997516 -95747382 - L1MA4 LINE L1 -2721 3761 1 651 160 194 0 chr13 23997605 23997755 -95747143 + MER5A DNA MER1_type 4 187 -2 646 51 0 0 chr13 23998987 23999065 -95745833 - L1PA5 LINE L1 -1 6153 6076 212 373 36 0 chr13 23999071 23999181 -95745717 + (CATATA)n Simple_repeat Simple_repeat 3 116 0 1769 105 34 4 chr13 23999194 23999465 -95745433 - L1PA5 LINE L1 -34 6120 5841 581 76 49 45 chr13 24001443 24001709 -95743189 + (TA)n Simple_repeat Simple_repeat 1 267 0 317 275 0 37 chr13 24001712 24001821 -95743077 + L1MC4 LINE L1 6614 6718 -1324 1983 146 104 3 chr13 24001924 24002252 -95742646 + MER46B DNA MER2_type 1 236 0 1988 156 3 3 chr13 24002982 24003290 -95741608 - AluJb SINE Alu -4 308 1 203 293 120 23 chr13 24005037 24005170 -95739728 - L2 LINE L2 -26 3246 3101 * 708 235 16 22 chr13 24005107 24005290 -95739608 - MER5A DNA MER1_type -7 182 1 2059 133 13 3 chr13 24005860 24006169 -95738729 + AluJb SINE Alu 1 312 0 2097 112 3 16 chr13 24006437 24006740 -95738158 - AluSx SINE Alu -13 299 1 323 320 22 43 chr13 24007191 24007392 -95737506 - MIR SINE MIR -60 202 4 342 308 83 8 chr13 24007638 24007758 -95737140 + MIR SINE MIR 21 149 -113 694 279 25 15 chr13 24007778 24007982 -95736916 - MIR SINE MIR -56 206 1 360 0 0 0 chr13 24009385 24009425 -95735473 + (TG)n Simple_repeat Simple_repeat 2 41 0 1718 138 19 70 chr13 24009425 24009737 -95735161 - AluJo SINE Alu -16 296 1 341 296 179 25 chr13 24009817 24009979 -95734919 - MIR SINE MIR -19 243 57 2172 129 0 10 chr13 24011180 24011489 -95733409 - AluSx SINE Alu -6 306 1 1338 159 0 10 chr13 24011650 24011858 -95733040 + AluJo SINE Alu 86 291 -21 21 36 0 0 chr13 24013237 24013265 -95731633 + AT_rich Low_complexity Low_complexity 1 28 0 222 327 159 0 chr13 24014422 24014535 -95730363 - L2 LINE L2 0 3272 3142 250 333 116 21 chr13 24014818 24015242 -95729656 - L2 LINE L2 -2333 981 518 565 167 11 0 chr13 24015752 24015842 -95729056 + FLAM_A SINE Alu 36 126 -16 2129 138 0 0 chr13 24015954 24016259 -95728639 - AluJb SINE Alu -7 305 1 497 241 103 69 chr13 24017015 24017172 -95727726 - MIR SINE MIR -37 225 56 2220 96 0 0 chr13 24017172 24017499 -95727399 + AluSx SINE Alu 1 327 0 497 241 103 69 chr13 24017499 24017542 -95727356 - MIR SINE MIR -206 56 16 3801 109 13 2 chr13 24017542 24018064 -95726834 + MER1A DNA MER1_type 1 528 -1 2008 144 0 6 chr13 24018266 24018579 -95726319 + AluSx SINE Alu 1 311 -1 2298 97 0 7 chr13 24019502 24019801 -95725097 + AluSg SINE Alu 1 297 -13 561 243 40 40 chr13 24019984 24020157 -95724741 - MLT1D LTR MaLR 0 505 333 628 223 0 136 chr13 24020208 24020347 -95724551 - MLT1D LTR MaLR -315 190 90 2177 107 3 3 chr13 24020347 24020645 -95724253 + AluSx SINE Alu 1 298 -14 628 223 0 136 chr13 24020645 24020725 -95724173 - MLT1D LTR MaLR -415 90 1 588 258 92 72 chr13 24022045 24022309 -95722589 - L1MEc LINE L1 -4303 2093 1819 2230 119 0 0 chr13 24022309 24022611 -95722287 - AluSx SINE Alu -10 302 1 588 258 92 72 chr13 24022611 24022706 -95722192 - L1MEc LINE L1 -4577 1819 1727 286 282 137 8 chr13 24022707 24022948 -95721950 - L1MEc LINE L1 -4425 1971 1700 197 208 42 21 chr13 24024005 24024053 -95720845 + L2 LINE L2 3261 3309 -4 474 18 0 0 chr13 24024836 24024891 -95720007 + (TG)n Simple_repeat Simple_repeat 2 56 0 2079 137 0 3 chr13 24024892 24025184 -95719714 - AluSx SINE Alu -21 291 1 6091 102 7 4 chr13 24025950 24026965 -95717933 - L1PA16 LINE L1 -2 6164 5128 253 292 201 11 chr13 24027026 24027184 -95717714 - MIR SINE MIR -61 147 3 2139 105 17 10 chr13 24028232 24028526 -95716372 - AluSq SINE Alu -17 296 1 23 0 0 0 chr13 24029139 24029162 -95715736 + AT_rich Low_complexity Low_complexity 1 23 0 2197 131 3 0 chr13 24029575 24029880 -95715018 + AluSx SINE Alu 1 306 -6 1690 178 11 3 chr13 24030166 24030452 -95714446 - AluJo SINE Alu -24 288 1 274 284 62 62 chr13 24030550 24030726 -95714172 - HAL1 LINE L1 -23 2484 2309 2324 105 0 3 chr13 24030742 24031048 -95713850 + AluSx SINE Alu 1 305 -7 434 314 118 14 chr13 24031560 24031836 -95713062 + L1ME LINE L1 5298 5600 -570 383 136 30 0 chr13 24031848 24031914 -95712984 + L1MC3 LINE L1 7552 7619 -166 418 272 49 33 chr13 24031924 24032125 -95712773 + L1ME LINE L1 5605 5824 -297 825 267 88 18 chr13 24032574 24032859 -95712039 + MER69 DNA AcHobo 244 548 -1978 1199 216 101 23 chr13 24032869 24033305 -95711593 + MER69 DNA AcHobo 2022 2491 -35 423 0 0 0 chr13 24033806 24033853 -95711045 + (CA)n Simple_repeat Simple_repeat 2 48 0 426 214 46 64 chr13 24034505 24034678 -95710220 - HAL1 LINE L1 -8 2499 2330 21 0 0 0 chr13 24034925 24034946 -95709952 + AT_rich Low_complexity Low_complexity 1 21 0 228 284 12 49 chr13 24035125 24035206 -95709692 - HAL1 LINE L1 -767 1740 1663 401 290 248 29 chr13 24035215 24035522 -95709376 - HAL1 LINE L1 -898 1609 1236 6288 55 46 45 chr13 24035522 24036640 -95708258 - SVA Other Other -551 1380 433 362 279 99 87 chr13 24086663 24086985 -95657913 - L1M4 LINE L1 -1826 4320 3995 1055 268 104 30 chr13 24087011 24087458 -95657440 - L1M4 LINE L1 -2218 3928 3411 2261 103 7 0 chr13 24087458 24087748 -95657150 + AluSc SINE Alu 1 292 -17 1055 268 104 30 chr13 24087748 24087990 -95656908 - L1M4 LINE L1 -2735 3411 3188 303 316 95 57 chr13 24088537 24088800 -95656098 - L1M4 LINE L1 -1186 4960 4688 860 132 26 0 chr13 24089381 24089519 -95655379 - L1P LINE L1 -1118 5028 4884 2850 100 15 8 chr13 24089519 24089920 -95654978 + L1PA13 LINE L1 5760 6163 0 860 132 26 0 chr13 24089920 24089933 -95654965 - L1P LINE L1 -1262 4884 4873 1830 167 7 10 chr13 24090497 24090802 -95654096 - AluJb SINE Alu -8 304 1 2287 111 7 0 chr13 24091447 24091754 -95653144 - AluSx SINE Alu -3 309 1 368 287 144 11 chr13 24092338 24092519 -95652379 + MIR SINE MIR 39 243 -19 2291 105 10 0 chr13 24092573 24092868 -95652030 - AluSx SINE Alu -14 298 1 764 77 0 0 chr13 24092961 24093052 -95651846 + AluSg/x SINE Alu 208 298 -14 2289 129 0 0 chr13 24093066 24093377 -95651521 + AluSx SINE Alu 1 311 -1 687 239 101 0 chr13 24093680 24093868 -95651030 - MER102a DNA MER1_type 0 330 124 1134 227 61 64 chr13 24094566 24094651 -95650247 + MER90 LTR ERV1 238 322 -292 2333 91 0 3 chr13 24094651 24094949 -95649949 + AluSq SINE Alu 1 297 -16 1134 227 61 64 chr13 24094949 24095238 -95649660 + MER90 LTR ERV1 322 611 -3 953 271 8 4 chr13 24098271 24098511 -95646387 + MIR SINE MIR 1 241 -21 348 296 24 48 chr13 24099377 24099502 -95645396 - MIR SINE MIR -117 145 24 1508 127 0 0 chr13 24100222 24100435 -95644463 + AluJb SINE Alu 1 213 -99 821 153 8 15 chr13 24101610 24101741 -95643157 + FLAM_A SINE Alu 4 133 0 767 146 0 41 chr13 24102022 24102145 -95642753 - FLAM_A SINE Alu -13 120 3 221 163 75 0 chr13 24102169 24102249 -95642649 + (TA)n Simple_repeat Simple_repeat 1 86 0 1914 118 3 88 chr13 24102496 24102835 -95642063 - AluSx SINE Alu -2 310 1 4477 239 48 62 chr13 24103252 24103284 -95641614 - L1M4c LINE L1 -4186 2639 2608 1538 142 62 31 chr13 24103284 24103531 -95641367 - L1MB5 LINE L1 -8 6166 5907 2477 186 13 45 chr13 24103531 24104003 -95640895 + MSTB2 LTR MaLR 1 457 0 1538 142 62 31 chr13 24104003 24104044 -95640854 - L1MB5 LINE L1 -267 5907 5869 4477 239 48 62 chr13 24104044 24106523 -95638375 - L1M4c LINE L1 -4217 2608 14 9499 52 1 0 chr13 24107301 24108371 -95636527 + MER11C LTR ERVK 1 1071 0 297 320 20 0 chr13 24109046 24109146 -95635752 - L3 LINE CR1 -249 1328 1227 642 153 46 8 chr13 24112237 24112368 -95632530 + L1MA4A LINE L1 6168 6303 0 27 0 0 0 chr13 24112972 24112999 -95631899 + AT_rich Low_complexity Low_complexity 1 27 0 831 211 139 0 chr13 24113449 24113629 -95631269 - MER3 DNA MER1_type -4 205 1 421 222 159 8 chr13 24114982 24115108 -95629790 + MIR3 SINE MIR 4 148 -60 184 382 80 43 chr13 24115227 24115737 -95629161 - L2 LINE L2 -661 2653 2125 216 220 169 0 chr13 24116059 24116118 -95628780 - L2 LINE L2 -2066 1248 1180 1425 226 108 39 chr13 24116401 24116835 -95628063 + MLT1C LTR MaLR 3 466 -1 668 265 113 95 chr13 24121625 24122515 -95622383 - L2 LINE L2 0 3313 2318 379 252 72 9 chr13 24122831 24122942 -95621956 - MER102a DNA MER1_type -147 183 66 289 286 50 21 chr13 24123129 24123269 -95621629 + L2 LINE L2 3106 3249 -64 2491 258 22 41 chr13 24126854 24127666 -95617232 + L1ME1 LINE L1 5373 6334 0 412 259 27 34 chr13 24129177 24129324 -95615574 + Tigger8 DNA MER2_type 430 575 -91 192 40 0 0 chr13 24129959 24129984 -95614914 + (TC)n Simple_repeat Simple_repeat 2 26 0 843 186 84 0 chr13 24129990 24130157 -95614741 - AluY SINE Alu -3 308 128 1337 144 4 48 chr13 24130160 24130389 -95614509 - AluSg/x SINE Alu -11 299 81 1360 180 62 42 chr13 24130985 24131274 -95613624 - AluJo SINE Alu -17 295 1 12051 118 43 9 chr13 24131345 24133187 -95611711 - Tigger1 DNA MER2_type 0 2418 514 1675 158 0 4 chr13 24133204 24133470 -95611428 - Tigger1 DNA MER2_type -2153 265 1 2099 121 0 3 chr13 24133564 24133876 -95611022 - AluSx SINE Alu 0 311 1 643 326 49 0 chr13 24133927 24134151 -95610747 - MIR SINE MIR -14 248 14 1638 149 19 55 chr13 24134520 24134829 -95610069 - AluJb SINE Alu -14 298 1 3792 180 100 9 chr13 24136549 24137531 -95607367 - L1MB8 LINE L1 -6 6172 5092 396 0 0 0 chr13 24138019 24138063 -95606835 + (CA)n Simple_repeat Simple_repeat 2 45 0 2323 113 0 0 chr13 24139364 24139673 -95605225 - AluSc SINE Alu 0 309 1 2578 173 86 29 chr13 24139695 24140244 -95604654 + L1MB5 LINE L1 5587 6166 -8 287 300 15 62 chr13 24140424 24140554 -95604344 + MER5B DNA MER1_type 49 172 -6 1714 149 27 27 chr13 24140633 24140929 -95603969 - AluJo SINE Alu -14 298 3 204 317 65 65 chr13 24141067 24141190 -95603708 - MIR SINE MIR -122 140 18 460 233 54 0 chr13 24141942 24142071 -95602827 - L1ME4a LINE L1 0 6121 5986 210 91 0 0 chr13 24145399 24145432 -95599466 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 29 0 0 0 chr13 24146401 24146430 -95598468 + AT_rich Low_complexity Low_complexity 1 29 0 1885 165 9 6 chr13 24146431 24146758 -95598140 - L1MA4 LINE L1 -10 6290 5963 215 317 39 39 chr13 24147166 24147270 -95597628 - MIR SINE MIR -47 215 112 2068 114 3 3 chr13 24147303 24147600 -95597298 - AluSx SINE Alu -15 297 1 813 185 0 22 chr13 24147723 24147858 -95597040 + FLAM_C SINE Alu 1 132 -1 396 103 0 0 chr13 24150411 24150469 -95594429 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 913 286 145 31 chr13 24150521 24150934 -95593964 + L2 LINE L2 2854 3313 0 333 303 62 28 chr13 24151469 24151614 -95593284 - L2 LINE L2 -458 2856 2707 4185 177 57 37 chr13 24151615 24152897 -95592001 - L1MB7 LINE L1 0 6184 4870 497 276 8 16 chr13 24152981 24153104 -95591794 - L2 LINE L2 -8 3305 3184 270 262 29 141 chr13 24153639 24153845 -95591053 - MIR SINE MIR -17 245 63 509 80 13 0 chr13 24155723 24155798 -95589100 + (TGGA)n Simple_repeat Simple_repeat 1 76 0 2423 77 17 0 chr13 24156457 24156757 -95588141 - AluY SINE Alu -6 305 1 1096 188 99 5 chr13 24157257 24157417 -95587481 - AluJo SINE Alu -8 304 116 189 0 0 0 chr13 24157417 24157438 -95587460 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1096 188 99 5 chr13 24157438 24157500 -95587398 - AluJo SINE Alu -196 116 61 628 221 19 6 chr13 24157508 24157666 -95587232 - L1MB7 LINE L1 0 6184 6025 811 173 71 0 chr13 24157666 24157834 -95587064 - L1 LINE L1 -1006 5140 4961 2829 176 8 51 chr13 24157904 24158490 -95586408 - L1MB7 LINE L1 -192 5992 5432 853 300 88 11 chr13 24159211 24159667 -95585231 - L1ME3A LINE L1 -244 5926 5436 292 312 21 7 chr13 24159698 24159839 -95585059 - L1ME3A LINE L1 -3746 2400 2258 1422 181 63 52 chr13 24160107 24160510 -95584388 + MLT1E3 LTR MaLR 140 624 0 218 320 13 13 chr13 24161255 24161333 -95583565 - L2 LINE L2 -33 3239 3162 200 261 0 0 chr13 24162247 24162293 -95582605 - MIR SINE MIR -119 143 98 1042 190 59 69 chr13 24162644 24163082 -95581816 - MLT1D LTR MaLR -2 503 1 323 286 60 30 chr13 24164508 24164641 -95580257 + MIR SINE MIR 12 148 -114 180 200 0 0 chr13 24165329 24165369 -95579529 + CT-rich Low_complexity Low_complexity 1 40 0 195 302 175 24 chr13 24165682 24165808 -95579090 - MIR SINE MIR -35 227 83 266 230 95 0 chr13 24166198 24166272 -95578626 + MER103 DNA DNA 74 154 -12 1769 169 3 7 chr13 24166304 24166606 -95578292 + AluJb SINE Alu 1 301 -11 1416 192 8 4 chr13 24167088 24167349 -95577549 + AluJb SINE Alu 1 262 -50 609 193 12 28 chr13 24167350 24167603 -95577295 + GA-rich Low_complexity Low_complexity 1 249 0 358 204 20 10 chr13 24167614 24167712 -95577186 + GA-rich Low_complexity Low_complexity 4 102 0 470 285 43 38 chr13 24170161 24170347 -95574551 - L3b LINE CR1 -180 1403 1217 214 296 0 19 chr13 24170407 24170461 -95574437 + L2 LINE L2 3219 3271 -1 344 349 66 0 chr13 24170785 24170937 -95573961 - L2 LINE L2 -10 3262 3101 2264 121 0 0 chr13 24170937 24171234 -95573664 - AluSq SINE Alu -16 297 1 1915 160 0 3 chr13 24171556 24171850 -95573048 - AluJb SINE Alu -13 299 7 3811 139 43 3 chr13 24171959 24172536 -95572362 + MER7C DNA MER2_type 2 601 -1 927 230 72 5 chr13 24172853 24173062 -95571836 - MER58A DNA MER1_type -1 223 1 204 280 53 83 chr13 24173415 24173547 -95571351 - MIR SINE MIR -45 217 90 1046 158 18 0 chr13 24173795 24173966 -95570932 - AluJb SINE Alu -12 300 127 2429 83 0 6 chr13 24173966 24174279 -95570619 - AluY SINE Alu 0 311 1 2538 78 0 0 chr13 24176323 24176631 -95568267 + AluY SINE Alu 1 308 -3 1579 180 37 27 chr13 24177677 24177972 -95566926 - AluJo SINE Alu -14 298 1 2089 142 51 3 chr13 24178282 24178614 -95566284 - MER7A DNA MER2_type 0 346 1 210 37 0 0 chr13 24178951 24178978 -95565920 + (TC)n Simple_repeat Simple_repeat 2 28 0 2148 154 61 50 chr13 24179271 24179733 -95565165 + MLT1C LTR MaLR 1 467 0 2242 72 0 31 chr13 24181221 24181543 -95563355 - AluSx SINE Alu 0 313 1 191 261 130 22 chr13 24183985 24184077 -95560821 - MIR SINE MIR -52 210 109 691 196 8 8 chr13 24186176 24186332 -95558566 + FLAM_A SINE Alu 1 133 0 1573 125 52 66 chr13 24187731 24188019 -95556879 - AluJo SINE Alu -3 309 26 234 244 119 62 chr13 24188095 24188288 -95556610 - L1ME4a LINE L1 -60 6061 5858 341 141 0 94 chr13 24188288 24188352 -95556546 + AluJ/FLAM SINE Alu 1 58 -244 2037 131 24 0 chr13 24188474 24188765 -95556133 + AluSx SINE Alu 1 298 -14 610 117 0 29 chr13 24188905 24189008 -95555890 - FRAM SINE Alu -7 169 70 29 0 0 0 chr13 24190980 24191009 -95553889 + AT_rich Low_complexity Low_complexity 1 29 0 2022 130 0 10 chr13 24191920 24192212 -95552686 + AluSg SINE Alu 1 289 -21 429 145 0 0 chr13 24192620 24192696 -95552202 - AluJ/FRAM SINE Alu -10 302 227 586 301 12 45 chr13 24192823 24193069 -95551829 + MIR SINE MIR 3 240 -22 198 0 0 0 chr13 24193799 24193821 -95551077 + (TG)n Simple_repeat Simple_repeat 1 22 0 359 202 12 0 chr13 24195270 24195354 -95549544 + GA-rich Low_complexity Low_complexity 2 86 0 696 197 0 0 chr13 24197792 24197914 -95546984 + FLAM_A SINE Alu 1 122 -11 278 173 58 19 chr13 24197915 24198019 -95546879 + (TA)n Simple_repeat Simple_repeat 1 108 0 2254 123 0 22 chr13 24198275 24198592 -95546306 + AluSx SINE Alu 1 310 -2 464 230 164 7 chr13 24200817 24200969 -95543929 + MER5A DNA MER1_type 14 189 0 1890 229 65 49 chr13 24202516 24203067 -95541831 - MER119 DNA MER1_type -21 562 3 223 356 85 5 chr13 24203496 24203684 -95541214 + L3 LINE CR1 849 1051 -526 361 282 41 47 chr13 24203721 24203891 -95541007 + L3 LINE CR1 1156 1324 -253 5218 73 30 6 chr13 24206292 24206967 -95537931 + LTR8 LTR ERV1 1 691 0 258 106 0 0 chr13 24209023 24209070 -95535828 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 2032 109 0 21 chr13 24209070 24209355 -95535543 - AluSq SINE Alu -34 279 1 228 244 0 0 chr13 24209985 24210075 -95534823 + (TG)n Simple_repeat Simple_repeat 2 91 0 197 247 10 0 chr13 24210110 24210207 -95534691 + (TG)n Simple_repeat Simple_repeat 2 99 0 3274 100 15 0 chr13 24210413 24210874 -95534024 + L1PA10 LINE L1 5701 6168 0 291 377 62 0 chr13 24212323 24212469 -95532429 + MER91A DNA MER1_type 17 171 -25 322 220 14 113 chr13 24215263 24215404 -95529494 + L1MB3 LINE L1 6050 6176 -7 1680 186 46 15 chr13 24216906 24217233 -95527665 - MER1B DNA MER1_type 0 337 1 2329 53 0 28 chr13 24217290 24217574 -95527324 + AluY SINE Alu 16 291 -20 1999 141 3 20 chr13 24217783 24218089 -95526809 - AluSx SINE Alu -11 301 1 1202 187 72 75 chr13 24218809 24219025 -95525873 + MER2 DNA MER2_type 1 218 -127 2139 101 3 3 chr13 24219025 24219336 -95525562 - AluSq SINE Alu 0 311 1 1202 187 72 75 chr13 24219336 24219439 -95525459 + MER2 DNA MER2_type 218 320 -25 189 206 48 16 chr13 24219934 24219997 -95524901 - L2 LINE L2 -251 3021 2957 2298 93 3 0 chr13 24221057 24221347 -95523551 - AluSg SINE Alu -8 302 12 1809 110 0 4 chr13 24221412 24221648 -95523250 + AluSx SINE Alu 1 235 -77 25 0 0 0 chr13 24221663 24221688 -95523210 + AT_rich Low_complexity Low_complexity 1 25 0 1658 218 34 81 chr13 24222985 24223050 -95521848 - L1ME1 LINE L1 -2 6164 6097 2058 101 3 82 chr13 24223050 24223378 -95521520 - AluSq SINE Alu -11 302 1 1658 218 34 81 chr13 24223378 24223866 -95521032 - L1ME1 LINE L1 -69 6097 5637 336 304 31 12 chr13 24224408 24224569 -95520329 + MIR SINE MIR 79 242 -20 347 327 65 6 chr13 24224674 24224842 -95520056 - MIR SINE MIR -51 211 34 5923 132 21 7 chr13 24225666 24226705 -95518193 + L1PA13 LINE L1 4270 5347 -816 1892 148 22 29 chr13 24226705 24227016 -95517882 + AluJb SINE Alu 1 309 -3 5923 132 21 7 chr13 24227016 24227824 -95517074 + L1PA13 LINE L1 5347 6142 -21 411 21 0 0 chr13 24227824 24227872 -95517026 + (CA)n Simple_repeat Simple_repeat 2 49 0 1484 160 65 44 chr13 24228926 24229219 -95515679 + AluJo SINE Alu 3 301 -11 455 172 16 16 chr13 24229232 24229354 -95515544 + GA-rich Low_complexity Low_complexity 3 124 0 284 304 8 32 chr13 24229802 24229927 -95514971 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 1248 227 50 59 chr13 24230530 24230988 -95513910 + L1ME1 LINE L1 5704 6157 -9 360 0 0 0 chr13 24231116 24231156 -95513742 + (CA)n Simple_repeat Simple_repeat 2 41 0 2184 111 3 7 chr13 24232247 24232544 -95512354 - AluSx SINE Alu -16 296 1 1350 105 51 43 chr13 24233184 24233281 -95511617 + L1MA3 LINE L1 6047 6142 -163 2321 101 0 0 chr13 24233281 24233578 -95511320 + AluSq SINE Alu 1 297 -16 1350 105 51 43 chr13 24233578 24233737 -95511161 + L1MA3 LINE L1 6142 6305 0 35 0 0 0 chr13 24233737 24233772 -95511126 + AT_rich Low_complexity Low_complexity 1 35 0 490 94 47 24 chr13 24235102 24235187 -95509711 - MER34 LTR ERV1 0 542 456 810 84 0 9 chr13 24235191 24235298 -95509600 + FLAM_A SINE Alu 24 129 -13 2159 183 27 5 chr13 24235298 24235740 -95509158 - MER34 LTR ERV1 -64 478 27 585 258 91 45 chr13 24236294 24236515 -95508383 - MIR SINE MIR 0 262 32 195 283 43 0 chr13 24237793 24237839 -95507059 + L2 LINE L2 363 410 -2904 2828 82 0 11 chr13 24238012 24238391 -95506507 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr13 24239758 24239794 -95505104 + AT_rich Low_complexity Low_complexity 1 36 0 1860 167 0 26 chr13 24241522 24241827 -95503071 + AluJb SINE Alu 1 297 -15 1852 142 87 3 chr13 24242418 24242885 -95502013 - LTR31 LTR ERV1 -60 559 1 2406 189 17 14 chr13 24242923 24243847 -95501051 - L1M4 LINE L1 -477 5707 4786 1630 164 26 56 chr13 24244429 24244612 -95500286 - AluJo SINE Alu -16 296 124 2279 114 0 0 chr13 24244612 24244909 -95499989 + AluSx SINE Alu 1 297 -15 1630 164 26 56 chr13 24244909 24245030 -95499868 - AluJo SINE Alu -188 124 1 978 164 26 11 chr13 24245445 24245634 -95499264 + L1PA16 LINE L1 5959 6150 -16 291 208 0 52 chr13 24245689 24245766 -95499132 + L2 LINE L2 2330 2402 -912 184 294 56 86 chr13 24245797 24245994 -95498904 + L2 LINE L2 2826 3016 -256 414 263 26 51 chr13 24246002 24246158 -95498740 + L2 LINE L2 3160 3311 -2 26 30 0 0 chr13 24246870 24246903 -95497995 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr13 24247668 24247705 -95497193 + AT_rich Low_complexity Low_complexity 1 37 0 1702 180 3 37 chr13 24247864 24248164 -95496734 + AluJb SINE Alu 1 290 -22 431 289 75 19 chr13 24248170 24248488 -95496410 - HAL1 LINE L1 -143 2364 2029 271 271 182 6 chr13 24248584 24248765 -95496133 - HAL1 LINE L1 -607 1900 1688 252 250 61 45 chr13 24248780 24248912 -95495986 + Charlie2 DNA MER1_type 2019 2152 -710 * 389 188 134 38 chr13 24248906 24249092 -95495806 + Charlie2 DNA MER1_type 2401 2604 -258 3136 62 60 0 chr13 24249093 24249526 -95495372 + L1PA10 LINE L1 5710 6168 0 267 250 56 0 chr13 24249526 24249598 -95495300 - MIR SINE MIR -157 105 30 220 254 0 36 chr13 24249624 24249679 -95495219 - L2 LINE L2 -103 3169 3117 719 92 46 35 chr13 24249679 24249853 -95495045 + (ATATG)n Simple_repeat Simple_repeat 4 179 0 1279 172 33 105 chr13 24249984 24250374 -95494524 + MLT2D LTR ERVL 1 362 -52 261 57 0 0 chr13 24250383 24250418 -95494480 + (CA)n Simple_repeat Simple_repeat 1 35 0 673 171 62 21 chr13 24250423 24250616 -95494282 + Charlie2 DNA MER1_type 2594 2794 -68 3766 186 64 30 chr13 24250641 24251029 -95493869 + L1MB3 LINE L1 4598 4971 -1212 1809 147 0 58 chr13 24251029 24251342 -95493556 + AluJb SINE Alu 1 295 -17 3766 186 64 30 chr13 24251342 24252486 -95492412 + L1MB3 LINE L1 4971 6173 -10 337 362 88 27 chr13 24252673 24253002 -95491896 + L2 LINE L2 2920 3268 -4 1613 181 57 10 chr13 24253978 24254276 -95490622 - AluJb SINE Alu 0 312 1 376 308 51 10 chr13 24254733 24254943 -95489955 + MIR SINE MIR 38 254 -8 293 359 0 0 chr13 24255064 24255156 -95489742 - L2 LINE L2 -19 3294 3203 212 175 0 0 chr13 24255946 24255986 -95488912 + T-rich Low_complexity Low_complexity 3 42 0 999 221 38 14 chr13 24257976 24258189 -95486709 - MER20 DNA MER1_type -1 218 1 245 275 190 16 chr13 24258704 24258951 -95485947 - L1MC/D LINE L1 -2265 5543 5254 267 312 135 18 chr13 24259330 24259500 -95485398 - L2 LINE L2 -369 2945 2756 24 0 0 0 chr13 24259714 24259738 -95485160 + AT_rich Low_complexity Low_complexity 1 24 0 399 254 53 77 chr13 24259820 24260158 -95484740 - HAL1b LINE L1 -841 507 178 2087 129 0 3 chr13 24260273 24260567 -95484331 - AluSx SINE Alu -19 293 1 2028 148 3 10 chr13 24261441 24261752 -95483146 - AluJo SINE Alu -1 311 3 1072 184 79 44 chr13 24262221 24262536 -95482362 + L1MA7 LINE L1 5966 6291 0 219 281 146 73 chr13 24262735 24262831 -95482067 - L2 LINE L2 -25 3247 3145 2259 98 0 16 chr13 24263391 24263707 -95481191 - AluSx SINE Alu -1 311 1 477 0 0 0 chr13 24265964 24266017 -95478881 + (TA)n Simple_repeat Simple_repeat 1 53 0 192 260 83 73 chr13 24266110 24266176 -95478722 - L2 LINE L2 0 3272 3206 344 306 87 35 chr13 24266176 24266306 -95478592 + MER5A DNA MER1_type 1 144 -45 1715 158 14 28 chr13 24266306 24266597 -95478301 - AluJb SINE Alu -14 298 12 344 306 87 35 chr13 24266597 24266639 -95478259 + MER5A DNA MER1_type 144 182 -7 523 229 76 111 chr13 24266921 24267318 -95477580 - L1MC4 LINE L1 -9 8033 7651 2350 93 3 0 chr13 24267507 24267808 -95477090 - AluY SINE Alu -9 302 1 2213 128 0 0 chr13 24267856 24268162 -95476736 + AluSx SINE Alu 1 306 -6 211 343 135 27 chr13 24269417 24269831 -95475067 + L2 LINE L2 2075 2533 -781 557 185 11 0 chr13 24269836 24269928 -95474970 - FLAM_A SINE Alu -49 93 1 263 287 37 29 chr13 24270228 24270364 -95474534 + Charlie2 DNA MER1_type 170 306 -2556 435 227 136 23 chr13 24270670 24270846 -95474052 + Charlie2a DNA MER1_type 1467 1662 -1200 1202 268 31 19 chr13 24270918 24271404 -95473494 + Charlie2a DNA MER1_type 1661 2152 -710 389 188 134 38 chr13 24271398 24271584 -95473314 + Charlie2a DNA MER1_type 2401 2604 -258 * 3136 62 60 0 chr13 24271585 24272018 -95472880 + L1PA10 LINE L1 5710 6168 0 267 250 56 0 chr13 24272018 24272090 -95472808 - MIR SINE MIR -157 105 30 220 254 0 36 chr13 24272116 24272171 -95472727 - L2 LINE L2 -103 3169 3117 755 84 34 50 chr13 24272171 24272350 -95472548 + (ATATG)n Simple_repeat Simple_repeat 4 179 0 1279 172 33 105 chr13 24272481 24272871 -95472027 + MLT2D LTR ERVL 1 362 -52 297 51 0 0 chr13 24272880 24272919 -95471979 + (CA)n Simple_repeat Simple_repeat 1 39 0 643 180 57 21 chr13 24272924 24273118 -95471780 + Charlie2a DNA MER1_type 2594 2794 -68 1394 212 40 52 chr13 24273143 24273534 -95471364 + L1M4 LINE L1 4598 4985 -1161 1809 147 0 58 chr13 24273534 24273847 -95471051 + AluJb SINE Alu 1 295 -17 1394 212 40 52 chr13 24273847 24273875 -95471023 + L1M4 LINE L1 4985 5012 -1134 659 303 87 73 chr13 24274002 24275032 -95469866 + L1MC4a LINE L1 4001 5045 -1101 405 270 1 0 chr13 24275223 24275368 -95469530 + L1M LINE L1 5277 5423 -868 687 319 60 45 chr13 24275380 24275975 -95468923 + L1MC4a LINE L1 5317 5920 -1888 1235 173 128 12 chr13 24275985 24276228 -95468670 - AluJo SINE Alu -30 282 12 180 0 0 0 chr13 24276276 24276296 -95468602 + (TG)n Simple_repeat Simple_repeat 2 21 0 1649 179 155 29 chr13 24277183 24277454 -95467444 - LTR54B LTR ERV1 -32 466 124 356 0 23 0 chr13 24277454 24277498 -95467400 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1649 179 155 29 chr13 24277498 24277640 -95467258 - LTR54B LTR ERV1 -374 124 1 261 273 34 23 chr13 24277951 24278039 -95466859 + L2 LINE L2 3184 3272 0 423 0 0 0 chr13 24278716 24278763 -95466135 + (CA)n Simple_repeat Simple_repeat 1 47 0 653 73 0 0 chr13 24280059 24280141 -95464757 + L1P LINE L1 2 83 -6063 1056 205 63 14 chr13 24283037 24283376 -95461522 - MSTD LTR MaLR 0 396 1 2231 104 19 0 chr13 24283685 24283992 -95460906 + AluSq SINE Alu 1 313 0 484 140 0 20 chr13 24283995 24284095 -95460803 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 1700 218 19 14 chr13 24284653 24285016 -95459882 + MLT1A1 LTR MaLR 1 365 0 2265 106 0 0 chr13 24285529 24285821 -95459077 - AluSg SINE Alu -18 292 1 24 0 0 0 chr13 24286876 24286900 -95457998 + AT_rich Low_complexity Low_complexity 1 24 0 2391 90 3 0 chr13 24287186 24287487 -95457411 + AluSq SINE Alu 1 302 -11 417 305 89 39 chr13 24287503 24287785 -95457113 - L2 LINE L2 -35 3237 2942 335 200 0 0 chr13 24288906 24288966 -95455932 - MLT1J2 LTR MaLR -45 405 346 1694 255 30 30 chr13 24288984 24289517 -95455381 + MER74B LTR ERVL 56 588 -34 400 226 69 2 chr13 24289622 24289761 -95455137 - MLT1J2 LTR MaLR -229 180 36 2337 90 0 3 chr13 24292592 24292891 -95452007 + AluSx SINE Alu 1 298 -14 949 156 58 40 chr13 24293127 24293300 -95451598 - FRAM SINE Alu -1 175 1 1224 168 28 5 chr13 24293465 24293679 -95451219 + MER20 DNA MER1_type 1 219 0 837 130 0 3 chr13 24293988 24294211 -95450687 + AluSq SINE Alu 2 297 -16 477 243 56 21 chr13 24294220 24294364 -95450534 + MIR SINE MIR 73 221 -41 1972 127 28 11 chr13 24294406 24294689 -95450209 + AluSx SINE Alu 1 288 -24 222 37 0 0 chr13 24294689 24294716 -95450182 + (TA)n Simple_repeat Simple_repeat 1 27 0 288 266 108 29 chr13 24295516 24295620 -95449278 + L2 LINE L2 2392 2511 -803 1532 163 83 28 chr13 24295620 24295908 -95448990 - AluJo SINE Alu -8 304 1 288 266 108 29 chr13 24295908 24295942 -95448956 + L2 LINE L2 2511 2541 -773 726 150 92 0 chr13 24295972 24296092 -95448806 + MER3 DNA MER1_type 3 133 -76 4168 167 38 60 chr13 24296094 24296261 -95448637 - L1MB7 LINE L1 -8 6176 6007 2489 84 0 0 chr13 24296261 24296560 -95448338 + AluSx SINE Alu 1 299 -13 4168 167 38 60 chr13 24296560 24297569 -95447329 - L1MB7 LINE L1 -177 6007 5024 1538 185 19 0 chr13 24297569 24297839 -95447059 + L1PB4 LINE L1 5881 6155 -1 4168 167 38 60 chr13 24297839 24297872 -95447026 - L1MB7 LINE L1 -1160 5024 4992 816 147 78 11 chr13 24297878 24298069 -95446829 - L1MB4 LINE L1 -1 6179 5976 389 216 11 0 chr13 24298069 24298157 -95446741 + MER3 DNA MER1_type 121 209 0 559 306 76 20 chr13 24298173 24298634 -95446264 + L2 LINE L2 2595 3073 -240 1027 170 0 6 chr13 24298665 24298836 -95446062 - FRAM SINE Alu -10 166 1 2299 114 10 0 chr13 24298854 24299162 -95445736 - AluSx SINE Alu 0 312 2 476 257 131 23 chr13 24299172 24299347 -95445551 + L2 LINE L2 3119 3312 -1 1361 157 25 58 chr13 24300075 24300216 -95444682 + L1PA16 LINE L1 5896 6026 -140 2247 97 0 0 chr13 24300216 24300537 -95444361 + AluSg1 SINE Alu 2 322 0 1361 157 25 58 chr13 24300537 24300668 -95444230 + L1PA16 LINE L1 6026 6160 -6 205 171 0 0 chr13 24300850 24300885 -95444013 + A-rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr13 24301256 24301276 -95443622 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 507 307 70 18 chr13 24302434 24302776 -95442122 - L1ME4a LINE L1 -52 6069 5710 588 241 69 46 chr13 24302797 24303058 -95441840 - L2 LINE L2 -588 2726 2460 438 281 131 14 chr13 24304449 24304670 -95440228 + MER115 DNA AcHobo 1 247 -446 229 290 121 40 chr13 24307494 24307651 -95437247 + MIR SINE MIR 32 196 -63 257 174 14 0 chr13 24307896 24307965 -95436933 + (CA)n Simple_repeat Simple_repeat 1 70 0 334 224 51 10 chr13 24307967 24308065 -95436833 + MER5A DNA MER1_type 88 189 0 2260 66 0 0 chr13 24310112 24310386 -95434512 + AluY SINE Alu 33 306 -5 4407 128 38 46 chr13 24310964 24311724 -95433174 - LTR1 LTR ERV1 0 785 32 566 271 181 52 chr13 24313314 24313739 -95431159 + MLT1K LTR MaLR 17 496 -92 1405 206 41 16 chr13 24314007 24314323 -95430575 - MER33 DNA MER1_type 0 324 1 2314 70 39 0 chr13 24314933 24315219 -95429679 - AluY SINE Alu -14 297 1 210 302 215 19 chr13 24315287 24315598 -95429300 + L2 LINE L2 2591 2962 -352 3098 179 41 80 chr13 24315792 24316556 -95428342 + L1MB2 LINE L1 5438 6171 0 25 0 0 0 chr13 24318310 24318335 -95426563 + AT_rich Low_complexity Low_complexity 1 25 0 1171 60 7 0 chr13 24319626 24319776 -95425122 - MER41A LTR ERV1 0 554 404 * 1924 89 4 4 chr13 24319774 24320033 -95424865 - MER41A LTR ERV1 -295 259 1 390 42 0 0 chr13 24322871 24322919 -95421979 + (GA)n Simple_repeat Simple_repeat 1 48 0 465 198 10 0 chr13 24323045 24323141 -95421757 + MER5A DNA MER1_type 9 105 -84 627 51 0 0 chr13 24324187 24324266 -95420632 + (ATG)n Simple_repeat Simple_repeat 1 79 0 239 289 48 0 chr13 24324347 24324430 -95420468 - MIR SINE MIR -135 127 41 1275 115 22 0 chr13 24324552 24324735 -95420163 + AluSq SINE Alu 121 307 -6 2374 108 0 0 chr13 24326398 24326705 -95418193 - AluSq SINE Alu -6 307 1 660 216 52 71 chr13 24328312 24328580 -95416318 + L1ME3A LINE L1 5903 6165 -5 2253 89 10 0 chr13 24328637 24328928 -95415970 - AluSq SINE Alu -19 294 1 2113 116 7 3 chr13 24329871 24330164 -95414734 + AluSp SINE Alu 1 294 -19 261 0 0 0 chr13 24330538 24330567 -95414331 + (TA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr13 24330567 24330597 -95414301 + AT_rich Low_complexity Low_complexity 1 30 0 2320 99 0 3 chr13 24331173 24331476 -95413422 + AluSg SINE Alu 1 302 -8 2118 106 0 3 chr13 24332610 24332916 -95411982 - AluSx SINE Alu 0 305 1 2215 79 41 7 chr13 24333277 24333567 -95411331 - AluY SINE Alu -10 301 2 366 42 0 0 chr13 24333749 24333797 -95411101 + (TC)n Simple_repeat Simple_repeat 1 48 0 213 175 0 0 chr13 24333873 24333913 -95410985 + CT-rich Low_complexity Low_complexity 2 41 0 44786 37 5 1 chr13 24334341 24340470 -95404428 - L1PA4 LINE L1 0 6155 2 413 311 28 38 chr13 24340907 24341225 -95403673 - L2 LINE L2 -373 2941 2627 2614 181 71 68 chr13 24341317 24342037 -95402861 - MER72 LTR ERV1 0 722 1 34 55 0 0 chr13 24342759 24342814 -95402084 + AT_rich Low_complexity Low_complexity 1 55 0 186 240 56 104 chr13 24344042 24344167 -95400731 + L2 LINE L2 2203 2321 -993 297 0 0 0 chr13 24344232 24344265 -95400633 + (CA)n Simple_repeat Simple_repeat 1 33 0 675 120 0 0 chr13 24344318 24344443 -95400455 + AluSp/q SINE Alu 193 317 0 503 270 173 17 chr13 24344700 24344989 -95399909 + L2 LINE L2 2627 2960 -354 238 249 142 53 chr13 24345073 24345242 -95399656 + L2 LINE L2 3130 3313 0 357 310 7 45 chr13 24345244 24345290 -95399608 + MER5B DNA MER1_type 30 76 -102 1303 193 9 0 chr13 24345290 24345523 -95399375 - MER46A DNA MER2_type 0 236 2 357 310 7 45 chr13 24345523 24345631 -95399267 + MER5B DNA MER1_type 76 178 0 180 0 0 0 chr13 24346708 24346728 -95398170 + (TC)n Simple_repeat Simple_repeat 2 21 0 1991 69 3 73 chr13 24348250 24348539 -95396359 + AluSx SINE Alu 11 279 -33 353 125 0 0 chr13 24348542 24348590 -95396308 + AluS SINE Alu 230 277 -23 349 118 0 0 chr13 24348593 24348685 -95396213 + AluSc SINE Alu 230 321 0 1033 174 25 45 chr13 24350386 24350717 -95394181 + L1MA6 LINE L1 5997 6298 -2 1904 173 48 41 chr13 24350948 24351411 -95393487 - L1MB4 LINE L1 -39 6141 5676 21 0 0 0 chr13 24352215 24352236 -95392662 + AT_rich Low_complexity Low_complexity 1 21 0 3827 169 36 12 chr13 24353176 24353448 -95391450 + L1MA7 LINE L1 5509 5773 -518 369 0 0 0 chr13 24353448 24353489 -95391409 + (CA)n Simple_repeat Simple_repeat 2 42 0 3827 169 36 12 chr13 24353489 24353971 -95390927 + L1MA7 LINE L1 5773 6281 -10 213 266 121 32 chr13 24354213 24354337 -95390561 + MIR SINE MIR 15 149 -113 267 360 22 14 chr13 24355162 24355301 -95389597 + MIR3 SINE MIR 43 182 -26 279 290 117 61 chr13 24355316 24355744 -95389154 + L2 LINE L2 1931 2382 -932 582 268 199 35 chr13 24356558 24356961 -95387937 - LTR33A LTR ERVL 0 523 55 189 173 19 39 chr13 24357095 24357147 -95387751 + L2 LINE L2 3262 3312 -1 239 304 72 0 chr13 24357910 24357979 -95386919 - MIR3 SINE MIR -26 182 109 180 77 0 0 chr13 24358575 24358601 -95386297 + (TTCCC)n Simple_repeat Simple_repeat 2 27 0 299 308 76 22 chr13 24358717 24358914 -95385984 - MIR SINE MIR -54 208 4 1577 174 0 71 chr13 24361069 24361379 -95383519 - AluJo SINE Alu -23 289 2 1800 135 35 7 chr13 24362108 24362390 -95382508 + AluJb SINE Alu 21 310 -2 2232 103 3 22 chr13 24362628 24362939 -95381959 + AluSg SINE Alu 1 305 -5 2317 181 42 2 chr13 24365511 24365941 -95378957 - MLT1C LTR MaLR 0 467 21 2671 102 6 3 chr13 24365980 24366342 -95378556 + THE1B LTR MaLR 1 363 -1 2368 76 0 10 chr13 24366544 24366847 -95378051 + AluY SINE Alu 1 300 -11 2318 95 10 0 chr13 24367023 24367318 -95377580 - AluSq SINE Alu -15 298 1 341 333 26 19 chr13 24367734 24367890 -95377008 + L2 LINE L2 3116 3272 0 842 161 0 0 chr13 24368010 24368134 -95376764 + FLAM_C SINE Alu 1 124 -19 24 0 0 0 chr13 24368140 24368164 -95376734 + AT_rich Low_complexity Low_complexity 1 24 0 689 221 0 0 chr13 24370113 24370253 -95374645 + Tigger4(Zombi) DNA MER2_type 1 140 -2591 1504 125 141 4 chr13 24370869 24371125 -95373773 + AluJo SINE Alu 1 291 -21 438 305 155 29 chr13 24371442 24372045 -95372853 + L2 LINE L2 2632 3311 -2 1701 175 53 50 chr13 24372351 24372711 -95372187 + MER46B DNA MER2_type 1 236 0 2387 97 0 3 chr13 24373057 24373367 -95371531 + AluSq SINE Alu 1 309 -4 2125 115 0 26 chr13 24374143 24374447 -95370451 - AluSx SINE Alu -16 296 1 229 228 0 18 chr13 24374779 24374836 -95370062 + MIR SINE MIR 195 250 -12 307 325 76 30 chr13 24375714 24375951 -95368947 + MIR SINE MIR 9 256 -6 242 289 74 37 chr13 24376310 24376445 -95368453 - MIR SINE MIR -26 236 97 2028 170 84 5 chr13 24376730 24377124 -95367774 - MSTB LTR MaLR -1 425 1 204 200 0 0 chr13 24378617 24378672 -95366226 + T-rich Low_complexity Low_complexity 1 55 0 2416 63 0 0 chr13 24378863 24379164 -95365734 + AluY SINE Alu 4 304 -7 22 35 0 0 chr13 24379209 24379238 -95365660 + AT_rich Low_complexity Low_complexity 1 29 0 2133 117 0 0 chr13 24380135 24380435 -95364463 - AluSx SINE Alu -12 300 1 276 283 198 6 chr13 24382072 24382249 -95362649 + MIR SINE MIR 13 223 -39 344 266 99 17 chr13 24383397 24383618 -95361280 - L1ME2 LINE L1 -298 5866 5629 574 237 84 42 chr13 24383623 24383718 -95361180 - L1ME2 LINE L1 -913 5233 5143 2017 114 0 7 chr13 24383718 24384016 -95360882 - AluSx SINE Alu -16 296 1 574 237 84 42 chr13 24384016 24384182 -95360716 - L1ME2 LINE L1 -1003 5143 4961 1824 179 33 15 chr13 24384604 24384940 -95359958 + MER7A DNA MER2_type 2 341 -5 2019 104 35 0 chr13 24385518 24385807 -95359091 + AluSx SINE Alu 1 299 -13 1316 163 26 0 chr13 24385816 24386043 -95358855 + 7SLRNA srpRNA srpRNA 51 283 -37 26 0 0 0 chr13 24386062 24386088 -95358810 + AT_rich Low_complexity Low_complexity 1 26 0 468 277 54 14 chr13 24386111 24386259 -95358639 + MIR SINE MIR 24 177 -85 442 264 98 31 chr13 24387338 24387501 -95357397 - MIR SINE MIR -87 175 2 2138 115 0 0 chr13 24388035 24388340 -95356558 - AluSx SINE Alu -7 305 1 749 209 173 5 chr13 24389632 24389823 -95355075 - MIR SINE MIR -4 258 36 1158 256 33 39 chr13 24389828 24390191 -95354707 + MLT1A2 LTR MaLR 1 361 -13 1987 134 0 0 chr13 24391100 24391392 -95353506 - AluSx SINE Alu -20 292 1 23 0 0 0 chr13 24391972 24391995 -95352903 + AT_rich Low_complexity Low_complexity 1 23 0 550 176 0 0 chr13 24392012 24392114 -95352784 - HY1 scRNA scRNA -10 102 1 2690 223 55 18 chr13 24392252 24392920 -95351978 + L1ME2 LINE L1 5456 6148 -16 1459 179 36 17 chr13 24393663 24393964 -95350934 - AluJo SINE Alu -5 307 1 216 0 0 0 chr13 24394815 24394839 -95350059 + (A)n Simple_repeat Simple_repeat 1 24 0 12386 88 9 2 chr13 24394851 24396439 -95348459 + L1PA7 LINE L1 8 1606 -4855 16670 89 5 41 chr13 24396439 24399604 -95345294 + L1PA7 LINE L1 3338 6469 0 280 75 132 0 chr13 24400196 24400249 -95344649 - L1MA4A LINE L1 -5 6298 6239 401 296 68 14 chr13 24401001 24401221 -95343677 - L1ME4a LINE L1 -296 5825 5594 1002 197 0 5 chr13 24403154 24403347 -95341551 + AluJo SINE Alu 121 312 0 2339 84 0 3 chr13 24404406 24404716 -95340182 + AluSc SINE Alu 1 309 0 2145 99 3 3 chr13 24406170 24406463 -95338435 + AluSx SINE Alu 1 293 -19 184 311 94 28 chr13 24411014 24411120 -95333778 - L2 LINE L2 -2 3311 3199 300 269 180 30 chr13 24411822 24411989 -95332909 + MIR SINE MIR 40 231 -31 352 227 118 36 chr13 24415372 24415482 -95329416 + MIR SINE MIR 16 134 -74 2267 62 0 29 chr13 24416584 24416890 -95328008 + AluY SINE Alu 1 297 -14 382 269 32 118 chr13 24416892 24417360 -95327538 - L1MC5 LINE L1 -32 7929 7502 592 224 8 8 chr13 24417367 24417515 -95327383 - FLAM_A SINE Alu 0 142 6 218 259 24 35 chr13 24417618 24417703 -95327195 - MIR SINE MIR -62 146 63 2068 95 0 11 chr13 24418073 24418319 -95326579 - AluSg1 SINE Alu 0 305 61 180 0 0 0 chr13 24418319 24418339 -95326559 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 2068 95 0 11 chr13 24418339 24418400 -95326498 - AluSg1 SINE Alu -244 61 1 231 36 0 0 chr13 24418923 24418951 -95325947 + (TTG)n Simple_repeat Simple_repeat 2 29 0 24 32 0 0 chr13 24418965 24418996 -95325902 + AT_rich Low_complexity Low_complexity 1 31 0 2326 48 3 0 chr13 24419952 24420242 -95324656 + AluY SINE Alu 1 291 -20 1864 203 60 21 chr13 24421146 24421580 -95323318 - MER39 LTR ERV1 0 707 257 298 136 17 71 chr13 24421553 24421654 -95323244 - MER39 LTR ERV1 -560 93 1 * 250 311 189 5 chr13 24421654 24421844 -95323054 - L2 LINE L2 -285 3028 2804 1018 184 0 6 chr13 24422017 24422191 -95322707 + FAM SINE Alu 1 173 -2 26 50 0 0 chr13 24422934 24422974 -95321924 + AT_rich Low_complexity Low_complexity 1 40 0 24 96 0 0 chr13 24423137 24423210 -95321688 + AT_rich Low_complexity Low_complexity 1 73 0 1816 136 0 14 chr13 24425245 24425540 -95319358 + AluJo SINE Alu 3 293 -19 1967 144 20 0 chr13 24425614 24425920 -95318978 + AluSx SINE Alu 1 312 0 276 317 38 32 chr13 24426728 24426914 -95317984 - MLT1L LTR MaLR 0 615 429 4577 133 22 13 chr13 24427353 24428128 -95316770 - L1MA9 LINE L1 0 6312 5531 21 36 0 0 chr13 24428325 24428353 -95316545 + AT_rich Low_complexity Low_complexity 1 28 0 806 238 161 45 chr13 24431478 24431924 -95312974 - L2 LINE L2 -1 3312 2815 3132 162 34 35 chr13 24432546 24433195 -95311703 - L1MD1 LINE L1 0 6636 5989 338 174 29 14 chr13 24433220 24433289 -95311609 - MLT1H LTR MaLR -54 495 426 505 113 12 0 chr13 24433307 24433387 -95311511 - L1MB7 LINE L1 -21 6163 6083 * 8449 219 46 81 chr13 24433380 24433981 -95310917 - L1MD1 LINE L1 -627 6009 5389 5257 9 0 0 chr13 24433981 24434560 -95310338 - L1PA2 LINE L1 -1 6154 5576 8449 219 46 81 chr13 24434560 24437597 -95307301 - L1MD1 LINE L1 -1247 5389 2504 5091 205 122 40 chr13 24437624 24437809 -95307089 - L1MD1 LINE L1 -4338 2202 2034 2121 127 0 13 chr13 24437809 24437985 -95306913 - AluSx SINE Alu -4 308 136 2283 110 0 0 chr13 24437985 24438276 -95306622 - AluSx SINE Alu -21 291 1 2121 127 0 13 chr13 24438276 24438407 -95306491 - AluSx SINE Alu -176 136 5 5091 205 122 40 chr13 24438407 24439877 -95305021 - L1MD1 LINE L1 -4506 2034 258 221 273 182 0 chr13 24440940 24441039 -95303859 + L2 LINE L2 3153 3269 -3 23 0 0 0 chr13 24441993 24442016 -95302882 + AT_rich Low_complexity Low_complexity 1 23 0 3967 185 51 30 chr13 24442158 24443288 -95301610 - L1MB5 LINE L1 -6 6168 5009 1196 154 24 12 chr13 24443292 24443538 -95301360 - L1MA7 LINE L1 0 6291 6043 2550 70 9 0 chr13 24443538 24443868 -95301030 + L1PA6 LINE L1 5821 6154 0 11831 165 43 9 chr13 24443868 24444141 -95300757 - L1MA7 LINE L1 -233 6058 5796 438 20 0 0 chr13 24444141 24444192 -95300706 + (TG)n Simple_repeat Simple_repeat 2 52 0 11831 165 43 9 chr13 24444192 24446945 -95297953 - L1MA7 LINE L1 -495 5796 2930 4683 224 31 27 chr13 24446946 24448221 -95296677 - L1MB5 LINE L1 -1130 5016 3737 307 289 110 46 chr13 24448871 24449217 -95295681 + L1MEd LINE L1 18 385 -5734 21 57 0 0 chr13 24450398 24450433 -95294465 + AT_rich Low_complexity Low_complexity 1 35 0 1335 280 112 27 chr13 24450450 24451042 -95293856 - MER115 DNA AcHobo -1 692 51 2258 110 3 0 chr13 24451076 24451376 -95293522 + AluSx SINE Alu 1 301 -11 233 351 30 8 chr13 24451452 24451583 -95293315 + MIR3 SINE MIR 64 197 -11 2077 168 37 0 chr13 24452437 24452811 -95292087 - MLT1B LTR MaLR 0 390 3 1928 149 7 14 chr13 24452944 24453240 -95291658 + AluJo SINE Alu 1 294 -18 248 308 17 0 chr13 24453923 24454040 -95290858 + G-rich Low_complexity Low_complexity 1 119 0 2290 117 3 0 chr13 24454685 24454994 -95289904 + AluSq SINE Alu 1 310 -3 438 229 208 0 chr13 24455411 24455523 -95289375 + MIR SINE MIR 31 118 -144 2192 187 17 17 chr13 24455523 24455982 -95288916 - LOR1b LTR ERV1 -2 459 1 438 229 208 0 chr13 24455982 24456061 -95288837 + MIR SINE MIR 118 262 0 191 368 80 6 chr13 24456063 24456226 -95288672 + MIR SINE MIR 66 240 -22 281 294 64 53 chr13 24458144 24458331 -95286567 - MIR3 SINE MIR -12 196 8 210 37 0 0 chr13 24459283 24459310 -95285588 + (TTCTG)n Simple_repeat Simple_repeat 3 29 0 764 196 82 23 chr13 24460013 24460232 -95284666 + MIR SINE MIR 31 262 0 2176 118 0 10 chr13 24460404 24460700 -95284198 + AluSx SINE Alu 1 293 -19 2001 127 0 3 chr13 24465398 24465723 -95279175 + AluSx SINE Alu 3 326 0 1992 125 35 0 chr13 24466208 24466496 -95278402 - AluSg SINE Alu -12 298 1 2091 117 11 3 chr13 24469445 24469727 -95275171 + AluSx SINE Alu 1 284 -28 216 0 0 0 chr13 24469727 24469751 -95275147 + (CAT)n Simple_repeat Simple_repeat 2 25 0 255 242 0 16 chr13 24470634 24470696 -95274202 + MIR SINE MIR 200 260 -2 25 31 0 0 chr13 24471492 24471524 -95273374 + AT_rich Low_complexity Low_complexity 1 32 0 1971 125 24 7 chr13 24472079 24472366 -95272532 - AluSx SINE Alu -11 301 10 291 163 0 0 chr13 24472520 24472569 -95272329 + L2 LINE L2 3264 3312 -1 1672 158 49 3 chr13 24472617 24472902 -95271996 + AluJo SINE Alu 1 298 -14 634 159 146 13 chr13 24473291 24473442 -95271456 - MLT1B LTR MaLR -219 171 1 981 157 120 0 chr13 24473659 24473850 -95271048 - L1MB5 LINE L1 0 6174 5961 716 171 8 16 chr13 24473861 24473984 -95270914 - FLAM_C SINE Alu -21 122 1 3568 166 35 12 chr13 24473984 24474720 -95270178 - L1MB5 LINE L1 -212 5972 5223 24 32 0 0 chr13 24475083 24475114 -95269784 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr13 24475485 24475516 -95269382 + AT_rich Low_complexity Low_complexity 1 31 0 342 0 0 0 chr13 24477192 24477230 -95267668 + (TG)n Simple_repeat Simple_repeat 2 39 0 2198 121 0 0 chr13 24478776 24479073 -95265825 - AluSx SINE Alu -15 297 1 225 282 0 127 chr13 24479751 24479805 -95265093 + L3 LINE CR1 1480 1539 -38 1167 197 51 91 chr13 24479805 24479978 -95264920 + MER58B DNA MER1_type 2 180 -2240 2435 53 3 41 chr13 24479978 24480297 -95264601 + AluY SINE Alu 1 307 -4 1167 197 51 91 chr13 24480297 24480433 -95264465 + MER58B DNA MER1_type 180 298 -2122 1679 157 3 39 chr13 24480433 24480745 -95264153 - AluJo SINE Alu -11 301 1 1167 197 51 91 chr13 24480745 24480784 -95264114 + MER58B DNA MER1_type 298 337 -4 225 282 0 127 chr13 24480784 24480839 -95264059 + L3 LINE CR1 1539 1575 -2 1941 134 13 10 chr13 24482351 24482658 -95262240 + AluSx SINE Alu 1 308 -4 261 139 0 0 chr13 24484944 24484987 -95259911 + (A)n Simple_repeat Simple_repeat 1 43 0 198 188 0 0 chr13 24487227 24487259 -95257639 + MIR SINE MIR 221 252 -10 4059 128 44 23 chr13 24487267 24487833 -95257065 + L1MA4 LINE L1 5597 6181 -119 2216 115 3 0 chr13 24487833 24488137 -95256761 + AluSg SINE Alu 1 305 -5 4059 128 44 23 chr13 24488137 24488255 -95256643 + L1MA4 LINE L1 6181 6295 -5 648 191 63 74 chr13 24489308 24489356 -95255542 - MER5A DNA MER1_type -2 187 140 2065 146 0 0 chr13 24489356 24489658 -95255240 + AluJb SINE Alu 1 302 -10 648 191 63 74 chr13 24489658 24489798 -95255100 - MER5A DNA MER1_type -49 140 1 1302 163 65 0 chr13 24490047 24490164 -95254734 + AluJo SINE Alu 1 109 -203 423 0 0 0 chr13 24490164 24490211 -95254687 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1302 163 65 0 chr13 24490211 24490308 -95254590 + AluJo SINE Alu 109 229 -83 268 250 0 0 chr13 24490506 24490558 -95254340 + L1ME2 LINE L1 6097 6148 -16 1071 167 162 9 chr13 24490582 24490792 -95254106 + AluY SINE Alu 44 285 -26 1570 162 42 7 chr13 24490823 24491107 -95253791 + AluJb SINE Alu 1 294 -18 2515 80 0 0 chr13 24492532 24492843 -95252055 - AluSx SINE Alu -1 311 1 243 0 0 0 chr13 24493032 24493059 -95251839 + (GA)n Simple_repeat Simple_repeat 2 28 0 759 156 0 0 chr13 24494197 24494329 -95250569 + FRAM SINE Alu 38 169 0 2280 95 0 7 chr13 24495123 24495417 -95249481 + AluSg SINE Alu 1 292 -18 394 271 54 8 chr13 24496416 24496545 -95248353 - L2 LINE L2 -52 3261 3127 354 366 21 7 chr13 24497093 24497235 -95247663 + MIR SINE MIR 22 165 -97 2342 162 80 2 chr13 24497427 24497865 -95247033 - LOR1a LTR ERV1 -25 472 1 2039 120 28 0 chr13 24497927 24498210 -95246688 - AluSq SINE Alu -22 291 1 584 128 43 11 chr13 24498242 24498336 -95246562 - LTR12 LTR ERV1 -229 485 389 329 147 59 88 chr13 24498336 24498438 -95246460 - LTR30 LTR ERV1 -79 643 379 528 206 39 25 chr13 24498439 24498640 -95246258 - LTR12 LTR ERV1 -429 1475 96 247 250 0 0 chr13 24498640 24498692 -95246206 - LTR30 LTR ERV1 -670 52 1 227 301 204 0 chr13 24498738 24498831 -95246067 - L2 LINE L2 -38 3234 3123 394 146 0 0 chr13 24498845 24498913 -95245985 - MLT1G1 LTR MaLR -6 589 476 794 194 0 8 chr13 24498924 24499058 -95245840 + FLAM_A SINE Alu 1 133 0 2667 161 60 39 chr13 24499067 24499637 -95245261 + L1MB3 LINE L1 5595 6176 -7 758 245 155 49 chr13 24499640 24499758 -95245140 - MLT1H1 LTR MaLR -55 540 436 1227 213 135 27 chr13 24499758 24500092 -95244806 + MLT1A2 LTR MaLR 1 370 -4 758 245 155 49 chr13 24500092 24500420 -95244478 - MLT1H1 LTR MaLR -159 436 3 2080 110 3 64 chr13 24501048 24501375 -95243523 - AluSq SINE Alu -2 311 5 1880 185 73 0 chr13 24501993 24502333 -95242565 - MER47A DNA MER2_type 0 366 2 225 280 75 65 chr13 24502405 24502498 -95242400 - L2 LINE L2 -33 3239 3146 2047 138 7 0 chr13 24502717 24503014 -95241884 + AluSq SINE Alu 1 299 -14 205 278 139 78 chr13 24503146 24503326 -95241572 - MIR SINE MIR -49 213 23 1647 170 0 55 chr13 24503349 24503661 -95241237 + AluJo SINE Alu 1 295 -17 432 228 304 35 chr13 24503927 24504423 -95240475 + LTR50 LTR ERVL 1 758 -37 233 176 77 66 chr13 24504428 24504519 -95240379 + L1ME LINE L1 5582 5673 -497 1442 103 0 10 chr13 24504525 24504752 -95240146 - AluSq SINE Alu 0 317 93 641 243 0 0 chr13 24505890 24506026 -95238872 + MIR SINE MIR 122 257 -5 285 355 13 26 chr13 24506229 24506384 -95238514 + L2 LINE L2 3159 3311 -2 433 235 154 15 chr13 24506726 24506862 -95238036 - MIR3 SINE MIR -20 188 34 713 198 0 0 chr13 24507994 24508110 -95236788 + FLAM_A SINE Alu 8 123 -19 214 313 214 10 chr13 24509290 24509482 -95235416 - L2 LINE L2 -1 3312 3082 1341 280 123 23 chr13 24512360 24513025 -95231873 + HAL1 LINE L1 1619 2350 -157 1219 169 9 144 chr13 24513331 24513679 -95231219 + AluJo SINE Alu 2 302 0 494 193 17 8 chr13 24514958 24515145 -95229753 - MER8 DNA MER2_type 0 239 8 1419 181 11 22 chr13 24515696 24515973 -95228925 + AluJb SINE Alu 33 306 -6 1559 170 30 22 chr13 24516197 24516467 -95228431 + AluSx SINE Alu 1 272 -40 22 35 0 0 chr13 24517605 24517634 -95227264 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 24518064 24518092 -95226806 + AT_rich Low_complexity Low_complexity 1 28 0 2426 72 0 28 chr13 24518404 24518724 -95226174 - AluY SINE Alu 0 311 1 514 238 159 9 chr13 24518725 24518939 -95225959 - L1M4 LINE L1 -3744 2402 2157 243 192 0 39 chr13 24519113 24519165 -95225733 - MER3 DNA MER1_type 0 209 160 2752 238 31 14 chr13 24519620 24520329 -95224569 + MER54A LTR ERVL 179 899 -2 435 218 22 3 chr13 24520330 24520435 -95224463 - L1ME2 LINE L1 -324 5840 5737 440 272 6 31 chr13 24520493 24520655 -95224243 - L1ME2 LINE L1 -413 5753 5596 201 39 0 0 chr13 24520661 24520687 -95224211 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1330 235 129 56 chr13 24520795 24521087 -95223811 - L1ME3A LINE L1 -135 6035 5766 1647 186 0 20 chr13 24521087 24521388 -95223510 - AluJo SINE Alu -16 296 2 1330 235 129 56 chr13 24521388 24521739 -95223159 - L1ME3A LINE L1 -404 5766 5319 736 245 108 58 chr13 24521780 24521986 -95222912 - L1ME3A LINE L1 -2828 3318 3124 1647 189 3 3 chr13 24521986 24522287 -95222611 - AluJb SINE Alu -11 301 1 736 245 108 58 chr13 24522287 24522619 -95222279 - L1ME3A LINE L1 -3022 3124 2753 736 197 0 8 chr13 24523078 24523205 -95221693 - FLAM_C SINE Alu -16 127 2 200 308 0 33 chr13 24523454 24523545 -95221353 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 2185 103 31 0 chr13 24523560 24523851 -95221047 - AluSc SINE Alu -9 300 1 357 168 107 92 chr13 24523855 24523986 -95220912 - L1MC4a LINE L1 -1869 5939 5807 1163 254 84 25 chr13 24524189 24524648 -95220250 + MLT1H1 LTR MaLR 2 452 -103 486 221 64 7 chr13 24524798 24524938 -95219960 - MIR SINE MIR -98 164 17 2132 113 0 0 chr13 24525080 24525373 -95219525 + AluJb SINE Alu 1 293 -19 1931 127 74 0 chr13 24525441 24525725 -95219173 + AluSx SINE Alu 3 307 -5 34 0 0 0 chr13 24526413 24526447 -95218451 + AT_rich Low_complexity Low_complexity 1 34 0 1630 190 80 131 chr13 24527684 24528119 -95216779 - L1MC4 LINE L1 -89 7953 7560 1875 136 26 19 chr13 24528119 24528427 -95216471 - AluJb SINE Alu -2 310 1 1630 190 80 131 chr13 24528427 24528632 -95216266 - L1MC4 LINE L1 -482 7560 7346 1594 180 0 33 chr13 24529256 24529556 -95215342 - AluJo SINE Alu -22 290 1 35 41 0 0 chr13 24532124 24532173 -95212725 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 24532231 24532252 -95212646 + AT_rich Low_complexity Low_complexity 1 21 0 201 147 0 0 chr13 24532559 24532593 -95212305 + (CATATA)n Simple_repeat Simple_repeat 5 38 0 2307 105 0 0 chr13 24533775 24534071 -95210827 - AluSx SINE Alu -16 296 1 237 132 0 0 chr13 24534106 24534144 -95210754 + (T)n Simple_repeat Simple_repeat 1 38 0 25 51 0 0 chr13 24534660 24534699 -95210199 + AT_rich Low_complexity Low_complexity 1 39 0 280 394 83 19 chr13 24534784 24535147 -95209751 + L2 LINE L2 2883 3268 -4 1923 113 30 0 chr13 24535383 24535649 -95209249 + AluSx SINE Alu 1 274 -38 333 224 24 0 chr13 24535656 24535741 -95209157 + L1MC4 LINE L1 6614 6700 -1342 195 129 0 0 chr13 24535743 24535774 -95209124 + (TA)n Simple_repeat Simple_repeat 1 31 0 613 264 80 45 chr13 24535774 24535853 -95209045 + L1MEd LINE L1 928 1003 -5263 2248 115 0 7 chr13 24535853 24536158 -95208740 + AluSx SINE Alu 1 303 -9 613 264 80 45 chr13 24536158 24536481 -95208417 + L1MEd LINE L1 1003 1393 -4873 3186 186 31 5 chr13 24536916 24537529 -95207369 - L1MB4 LINE L1 -1 6179 5551 1069 167 45 32 chr13 24537531 24537752 -95207146 - L1MB4 LINE L1 -698 5482 5259 2194 138 0 0 chr13 24538023 24538327 -95206571 + AluSx SINE Alu 1 304 -8 829 315 15 11 chr13 24538521 24538781 -95206117 - MIR SINE MIR -1 261 1 1508 190 28 24 chr13 24539717 24539783 -95205115 + MER45B DNA AcHobo 38 102 -938 2154 104 20 7 chr13 24539783 24540081 -95204817 - AluSq SINE Alu -11 302 1 1508 190 28 24 chr13 24540081 24540303 -95204595 + MER45B DNA AcHobo 102 327 -713 573 128 12 0 chr13 24540303 24540389 -95204509 + L1M3 LINE L1 5587 5673 -510 788 101 335 21 chr13 24540389 24540577 -95204321 + MER45B DNA AcHobo 790 1036 -4 495 250 0 0 chr13 24540579 24540679 -95204219 + L1ME LINE L1 5523 5622 -544 200 136 68 0 chr13 24541994 24542038 -95202860 + A-rich Low_complexity Low_complexity 1 47 0 498 332 94 0 chr13 24542302 24542525 -95202373 - MIR SINE MIR -8 254 11 184 263 0 0 chr13 24542638 24542676 -95202222 + L3b LINE CR1 1200 1237 -346 1141 284 83 43 chr13 24542823 24543057 -95201841 + LTR16B LTR ERVL 1 224 -240 2195 52 33 4 chr13 24543057 24543353 -95201545 + AluY SINE Alu 1 304 0 1141 284 83 43 chr13 24543353 24543561 -95201337 + LTR16B LTR ERVL 224 462 -2 2441 86 0 3 chr13 24543591 24543904 -95200994 + AluSx SINE Alu 1 312 0 193 340 0 0 chr13 24544677 24544727 -95200171 + MIR SINE MIR 64 113 -149 1920 132 17 20 chr13 24545109 24545405 -95199493 + AluJb SINE Alu 1 295 -17 346 280 347 19 chr13 24546110 24546230 -95198668 - L2 LINE L2 0 3272 3193 1111 175 123 32 chr13 24546230 24546482 -95198416 + ORSL DNA AcHobo 1 275 0 346 280 347 19 chr13 24546482 24546629 -95198269 - L2 LINE L2 -79 3193 2917 245 374 34 11 chr13 24547295 24547474 -95197424 - L2 LINE L2 -899 2415 2233 3119 195 33 0 chr13 24547476 24548020 -95196878 + MER68 LTR ERV1 1 562 0 218 291 13 38 chr13 24550044 24550123 -95194775 + MIR SINE MIR 3 79 -183 2282 104 0 3 chr13 24550854 24551161 -95193737 + AluSg SINE Alu 1 306 -4 211 360 47 23 chr13 24551460 24551632 -95193266 + L2 LINE L2 2612 2787 -527 253 194 163 51 chr13 24552014 24552112 -95192786 + L2 LINE L2 3204 3312 -1 25 65 0 0 chr13 24553007 24553053 -95191845 + AT_rich Low_complexity Low_complexity 1 46 0 662 268 28 6 chr13 24555543 24555722 -95189176 + MIR SINE MIR 79 261 -1 389 342 0 0 chr13 24555736 24555856 -95189042 + L2 LINE L2 3178 3297 -16 239 214 0 71 chr13 24555858 24555928 -95188970 - U4 snRNA snRNA -80 65 1 2201 102 0 7 chr13 24556050 24556358 -95188540 + AluSg SINE Alu 1 306 0 344 266 0 0 chr13 24556824 24556903 -95187995 + MLT1J2 LTR MaLR 84 162 -288 1196 185 19 0 chr13 24556984 24557189 -95187709 + MER3 DNA MER1_type 1 209 0 247 172 184 35 chr13 24557239 24557326 -95187572 + MLT1J1 LTR MaLR 347 446 0 31 44 0 0 chr13 24558170 24558215 -95186683 + AT_rich Low_complexity Low_complexity 1 45 0 283 330 34 11 chr13 24559945 24560033 -95184865 + MER5B DNA MER1_type 27 116 -62 1271 122 185 4 chr13 24562048 24562286 -95182612 - AluJo SINE Alu -17 285 5 237 207 276 11 chr13 24563014 24563101 -95181797 - L2 LINE L2 0 3313 3204 194 361 74 9 chr13 24563157 24563265 -95181633 + L2 LINE L2 3118 3232 -40 25 51 0 0 chr13 24564097 24564136 -95180762 + AT_rich Low_complexity Low_complexity 1 39 0 2370 100 0 0 chr13 24564301 24564600 -95180298 + AluSc SINE Alu 1 299 -10 2157 146 17 14 chr13 24564760 24565117 -95179781 - L1MB7 LINE L1 -9 6175 5818 813 273 174 28 chr13 24565208 24565604 -95179294 - LTR16A1 LTR ERVL -1 456 3 2699 306 77 43 chr13 24565688 24568034 -95176864 - ERVL LTR ERVL -90 4906 2808 371 236 47 8 chr13 24568066 24568193 -95176705 - Charlie5 DNA MER1_type -85 2527 2396 23 33 0 0 chr13 24569916 24569946 -95174952 + AT_rich Low_complexity Low_complexity 1 30 0 2487 59 0 34 chr13 24570512 24570834 -95174064 - AluY SINE Alu 0 311 1 205 170 57 38 chr13 24571014 24571067 -95173831 + L2 LINE L2 3207 3260 -12 2139 142 3 0 chr13 24571303 24571613 -95173285 + AluSx SINE Alu 1 311 -1 467 209 35 61 chr13 24572567 24572682 -95172216 + FLAM_A SINE Alu 3 114 -19 21 0 0 0 chr13 24572685 24572706 -95172192 + AT_rich Low_complexity Low_complexity 1 21 0 284 312 72 0 chr13 24573254 24573379 -95171519 + L2 LINE L2 3168 3301 -12 1642 120 84 22 chr13 24573505 24573779 -95171119 + AluSq SINE Alu 1 291 -22 216 343 135 19 chr13 24574065 24574272 -95170626 + L2 LINE L2 2127 2357 -957 1128 276 138 29 chr13 24575238 24575788 -95169110 - MLT1L LTR MaLR -3 612 3 265 217 42 25 chr13 24575797 24575917 -95168981 + (TATAA)n Simple_repeat Simple_repeat 4 125 0 26 0 0 0 chr13 24575955 24575981 -95168917 + AT_rich Low_complexity Low_complexity 1 26 0 1747 136 0 0 chr13 24576054 24576297 -95168601 + AluSx SINE Alu 1 243 -69 638 135 0 0 chr13 24576297 24576386 -95168512 - AluS SINE Alu -222 90 2 363 265 44 37 chr13 24576425 24576561 -95168337 + L1ME LINE L1 5672 5808 -313 1912 264 39 34 chr13 24576999 24577587 -95167311 - MLT1E LTR MaLR -2 591 1 410 308 65 55 chr13 24578464 24578772 -95166126 + MLT1J2 LTR MaLR 21 331 -119 1844 142 7 4 chr13 24579358 24579632 -95165266 + AluSq SINE Alu 31 305 -8 187 43 0 0 chr13 24579964 24579987 -95164911 + (TTTA)n Simple_repeat Simple_repeat 2 172 0 1893 164 0 3 chr13 24579987 24580271 -95164627 - AluJb SINE Alu -6 306 1 586 266 0 0 chr13 24580865 24580978 -95163920 - MER81 DNA DNA -1 113 1 1890 138 20 20 chr13 24581105 24581402 -95163496 + AluJo SINE Alu 1 297 -15 2409 53 0 0 chr13 24582345 24582670 -95162228 - AluY SINE Alu 0 325 1 691 312 118 30 chr13 24583161 24583805 -95161093 - L1ME4a LINE L1 -96 6025 5314 1726 228 64 67 chr13 24584692 24585382 -95159516 - L1ME4a LINE L1 -1099 5047 4360 * 7061 241 73 43 chr13 24585373 24585704 -95159194 - L1MEc LINE L1 -1542 4673 4353 1899 185 10 31 chr13 24585704 24586094 -95158804 - L1MB7 LINE L1 0 6184 5803 7061 241 73 43 chr13 24586094 24586338 -95158560 - L1MEc LINE L1 -1862 4353 4118 2036 100 57 0 chr13 24586338 24586617 -95158281 - AluY SINE Alu -16 295 1 7061 241 73 43 chr13 24586617 24588324 -95156574 - L1MEc LINE L1 -2097 4118 2463 599 169 16 0 chr13 24588324 24588448 -95156450 - L1MB2 LINE L1 -2 6169 6044 7061 241 73 43 chr13 24588448 24588610 -95156288 - L1MEc LINE L1 -3752 2463 2307 1808 161 0 7 chr13 24588610 24588896 -95156002 - AluSx SINE Alu -26 286 3 7061 241 73 43 chr13 24588896 24590389 -95154509 - L1MEc LINE L1 -3908 2307 656 740 132 8 0 chr13 24590421 24590438 -95154460 - L1MB7 LINE L1 -309 5875 5860 1626 119 5 0 chr13 24590438 24590657 -95154241 + AluSg/x SINE Alu 73 292 -20 740 132 8 0 chr13 24590657 24590773 -95154125 - L1MB7 LINE L1 -324 5860 5759 244 281 173 43 chr13 24592164 24592303 -95152595 - MER5B DNA MER1_type -1 177 21 300 207 12 73 chr13 24593093 24593175 -95151723 + MER5B DNA MER1_type 2 78 -100 440 199 53 53 chr13 24593206 24593297 -95151601 - MER5A DNA MER1_type -58 131 38 4269 119 39 2 chr13 24593297 24593909 -95150989 + MER41B LTR ERV1 1 635 0 440 199 53 53 chr13 24593909 24593948 -95150950 - MER5A DNA MER1_type -150 39 1 210 179 26 0 chr13 24594015 24594054 -95150844 + CT-rich Low_complexity Low_complexity 1 40 0 2263 97 3 0 chr13 24594379 24594669 -95150229 - AluSx SINE Alu -21 291 1 806 185 23 0 chr13 24594992 24595165 -95149733 + MER69 DNA AcHobo 2344 2520 -6 283 262 78 48 chr13 24596073 24596176 -95148722 - MIR SINE MIR -80 128 23 432 284 12 8 chr13 24596180 24596312 -95148586 + MIR SINE MIR 13 147 -62 4590 257 102 26 chr13 24596550 24598375 -95146523 - L2 LINE L2 -1 3312 1357 1447 176 68 3 chr13 24599222 24599529 -95145369 - L1MB3 LINE L1 0 6183 5857 2131 138 0 0 chr13 24599835 24600132 -95144766 + AluSx SINE Alu 1 297 -15 13984 132 23 121 chr13 24600142 24601034 -95143864 + L1P LINE L1 12 990 -5156 2463 28 42 0 chr13 24601034 24601323 -95143575 + AluY SINE Alu 2 302 -9 13984 132 23 121 chr13 24601323 24603568 -95141330 + L1P LINE L1 990 2842 -3304 812 87 0 0 chr13 24603568 24603671 -95141227 - AluSq/x SINE Alu -210 103 1 197 159 43 14 chr13 24603906 24603975 -95140923 + (TA)n Simple_repeat Simple_repeat 2 72 0 212 332 75 83 chr13 24604487 24604885 -95140013 + L2 LINE L2 2872 3266 -6 529 169 12 0 chr13 24605361 24605444 -95139454 + AluJ/FLAM SINE Alu 1 84 -228 794 249 98 87 chr13 24605449 24605899 -95138999 + L2 LINE L2 2691 3134 -179 207 0 0 0 chr13 24605899 24605922 -95138976 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2287 102 0 3 chr13 24605924 24606218 -95138680 - AluSq SINE Alu -20 293 1 794 249 98 87 chr13 24606218 24606359 -95138539 + L2 LINE L2 3134 3300 -13 280 293 9 66 chr13 24606437 24606543 -95138355 + MIR SINE MIR 8 107 -155 7853 41 2 2 chr13 24606742 24607708 -95137190 + L1PA5 LINE L1 5191 6153 -1 408 231 192 51 chr13 24607880 24607959 -95136939 - MIR SINE MIR -22 240 173 1857 143 32 0 chr13 24607959 24608239 -95136659 - AluJo SINE Alu -9 303 15 408 231 192 51 chr13 24608239 24608315 -95136583 - MIR SINE MIR -89 173 63 188 319 201 59 chr13 24609368 24609622 -95135276 - L2 LINE L2 0 3272 2983 1972 132 0 23 chr13 24609764 24610067 -95134831 + AluSx SINE Alu 1 296 -16 2109 110 48 0 chr13 24610959 24611250 -95133648 - AluSq SINE Alu -8 305 1 635 280 108 26 chr13 24611297 24611529 -95133369 - MIR SINE MIR -3 259 9 257 271 66 66 chr13 24612473 24612624 -95132274 - L2 LINE L2 -2 3311 3161 558 0 0 0 chr13 24612650 24612712 -95132186 + (TATTG)n Simple_repeat Simple_repeat 5 66 0 1974 154 3 0 chr13 24612712 24612997 -95131901 - AluSx SINE Alu -26 286 1 324 232 111 0 chr13 24613513 24613612 -95131286 - MIR3 SINE MIR -41 167 58 183 80 0 0 chr13 24614015 24614040 -95130858 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2346 81 0 3 chr13 24614263 24614559 -95130339 - AluY SINE Alu -16 295 1 1921 66 49 0 chr13 24615792 24616035 -95128863 + AluY SINE Alu 45 299 -12 513 315 81 20 chr13 24616192 24616565 -95128333 - L2 LINE L2 -184 3088 2680 2027 101 0 7 chr13 24617696 24617972 -95126926 + AluSc SINE Alu 1 274 -35 1329 158 0 0 chr13 24618214 24618417 -95126481 - AluSg/x SINE Alu -39 273 71 890 127 35 0 chr13 24618451 24618593 -95126305 - FRAM SINE Alu -4 172 26 1165 170 106 13 chr13 24618601 24618836 -95126062 + AluJo SINE Alu 46 302 -10 372 240 173 61 chr13 24619464 24619776 -95125122 + L1MEd LINE L1 598 944 -5175 1883 109 30 8 chr13 24619788 24620055 -95124843 + AluSx SINE Alu 2 274 -38 269 218 23 23 chr13 24620056 24620143 -95124755 + L1MC4 LINE L1 6616 6702 -1340 619 265 81 42 chr13 24620158 24620237 -95124661 + L1MEd LINE L1 928 1003 -5263 2298 115 0 6 chr13 24620237 24620550 -95124348 + AluSx SINE Alu 1 311 -1 619 265 81 42 chr13 24620550 24620872 -95124026 + L1MEd LINE L1 1003 1393 -4873 3287 179 31 5 chr13 24621307 24621920 -95122978 - L1MB4 LINE L1 -1 6179 5551 1049 172 45 32 chr13 24621922 24622143 -95122755 - L1MB4 LINE L1 -698 5482 5259 2194 138 0 0 chr13 24622414 24622718 -95122180 + AluSx SINE Alu 1 304 -8 829 315 15 11 chr13 24622912 24623172 -95121726 - MIR SINE MIR -1 261 1 475 257 29 15 chr13 24624327 24624463 -95120435 + MIR SINE MIR 32 169 -93 31 18 0 53 chr13 24624592 24624617 -95120281 + AT_rich Low_complexity Low_complexity 1 26 -28 1941 149 0 0 chr13 24624617 24624906 -95119992 - AluSx SINE Alu -23 289 1 31 18 0 53 chr13 24624906 24624937 -95119961 + AT_rich Low_complexity Low_complexity 26 54 0 2262 106 0 0 chr13 24625470 24625762 -95119136 + AluSx SINE Alu 1 292 -20 22 35 0 0 chr13 24625935 24625964 -95118934 + AT_rich Low_complexity Low_complexity 1 29 0 2304 92 0 3 chr13 24626340 24626634 -95118264 - AluSx SINE Alu -19 293 1 288 320 86 68 chr13 24626786 24627183 -95117715 + L2 LINE L2 2829 3232 -40 219 109 22 22 chr13 24627339 24627385 -95117513 + A-rich Low_complexity Low_complexity 2 47 0 2359 45 3 58 chr13 24627459 24627772 -95117126 - AluY SINE Alu -15 296 1 198 0 0 0 chr13 24627805 24627827 -95117071 + (A)n Simple_repeat Simple_repeat 1 22 0 2269 100 0 7 chr13 24628827 24629136 -95115762 + AluSx SINE Alu 1 307 -5 908 211 11 16 chr13 24630004 24630194 -95114704 - MER5A DNA MER1_type 0 189 1 4888 230 66 17 chr13 24630368 24631953 -95112945 - L1MDa LINE L1 -4723 1817 17 24 0 0 0 chr13 24632068 24632092 -95112806 + AT_rich Low_complexity Low_complexity 1 24 0 2374 173 22 7 chr13 24632864 24633281 -95111617 + MSTB LTR MaLR 4 426 0 2022 255 35 31 chr13 24633972 24634493 -95110405 + L1M4 LINE L1 27 549 -5993 4066 234 97 31 chr13 24634522 24636003 -95108895 + L1M4 LINE L1 973 2550 -4096 304 346 19 25 chr13 24636003 24636165 -95108733 - L1M4 LINE L1 -1313 4833 4673 2097 223 71 30 chr13 24636165 24636726 -95108172 + MER74B LTR ERVL 29 612 -10 739 270 11 22 chr13 24636737 24637004 -95107894 - L1M4 LINE L1 -1498 4648 4385 627 228 90 0 chr13 24637016 24637161 -95107737 - FRAM SINE Alu -6 170 13 968 158 28 0 chr13 24637409 24637586 -95107312 - MER57B LTR ERV1 0 434 253 7021 162 20 8 chr13 24637586 24638378 -95106520 + L1PA16 LINE L1 3893 4674 -1492 1847 116 16 0 chr13 24638378 24638629 -95106269 + AluSg SINE Alu 44 298 -12 7021 162 20 8 chr13 24638629 24640071 -95104827 + L1PA16 LINE L1 4674 6157 -9 12160 151 19 16 chr13 24640075 24640129 -95104769 - ERVL-C2 LTR ERVL -255 5509 5457 189 74 0 0 chr13 24640129 24640156 -95104742 + (CA)n Simple_repeat Simple_repeat 2 28 0 12160 151 19 16 chr13 24640156 24642122 -95102776 - ERVL-C2 LTR ERVL -307 5457 3444 5486 159 48 12 chr13 24642110 24642536 -95102362 - ERVL-C2 LTR ERVL -2965 2799 2390 * 2185 151 110 15 chr13 24642536 24642926 -95101972 + MSTA LTR MaLR 1 427 -1 5486 159 48 12 chr13 24642926 24643428 -95101470 - ERVL-C2 LTR ERVL -3374 2390 1837 7516 212 28 35 chr13 24643458 24643967 -95100931 - ERVL-C2 LTR ERVL -4139 1625 1114 1126 171 411 10 chr13 24643967 24644271 -95100627 + MSTB LTR MaLR 1 426 0 7516 212 28 35 chr13 24644271 24645150 -95099748 - ERVL-C2 LTR ERVL -4650 1114 247 2211 129 46 35 chr13 24645150 24645521 -95099377 - THE1C LTR MaLR 0 375 1 7516 212 28 35 chr13 24645521 24645766 -95099132 - ERVL-C2 LTR ERVL -5517 247 2 277 110 0 141 chr13 24645767 24645863 -95099035 - MLT2C2 LTR ERVL 0 464 422 1411 219 99 56 chr13 24645882 24646347 -95098551 - MLT2B1 LTR ERVL -35 485 1 2491 85 0 0 chr13 24646491 24646798 -95098100 + AluY SINE Alu 1 307 -4 288 264 170 0 chr13 24646903 24647009 -95097889 + MIR SINE MIR 3 126 -136 226 102 0 61 chr13 24647038 24647087 -95097811 - LTR66 LTR ERVL -171 439 394 425 141 33 25 chr13 24647093 24647214 -95097684 + (TA)n Simple_repeat Simple_repeat 1 122 0 235 100 20 20 chr13 24647222 24647272 -95097626 - LTR66 LTR ERVL -171 439 390 2307 105 0 0 chr13 24648452 24648748 -95096150 - AluSx SINE Alu -16 296 1 228 135 0 0 chr13 24648783 24648820 -95096078 + (T)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr13 24649336 24649358 -95095540 + AT_rich Low_complexity Low_complexity 1 22 0 235 189 95 53 chr13 24649363 24649458 -95095440 - L1MC4a LINE L1 -1636 6172 6074 271 398 84 17 chr13 24649465 24649822 -95095076 + L2 LINE L2 2888 3268 -4 2232 116 0 0 chr13 24650058 24650361 -95094537 + AluSg SINE Alu 1 303 -7 252 0 0 0 chr13 24650377 24650405 -95094493 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 2131 111 7 3 chr13 24650408 24650696 -95094202 - AluSg SINE Alu -21 289 1 21 57 0 0 chr13 24650915 24650950 -95093948 + AT_rich Low_complexity Low_complexity 1 35 0 356 234 123 58 chr13 24651709 24651880 -95093018 - L2 LINE L2 0 3313 3132 2165 136 0 0 chr13 24651933 24652241 -95092657 + AluSx SINE Alu 1 308 -4 21 36 0 0 chr13 24652317 24652345 -95092553 + AT_rich Low_complexity Low_complexity 1 28 0 780 181 0 0 chr13 24652347 24652474 -95092424 + FRAM SINE Alu 40 166 -10 263 272 100 69 chr13 24653406 24653887 -95091011 + L1M4 LINE L1 2335 2830 -3316 231 295 50 22 chr13 24654073 24654212 -95090686 + L1P LINE L1 4884 5026 -1120 1089 116 9 116 chr13 24654216 24654441 -95090457 + L1MB8 LINE L1 5977 6177 -1 31 0 0 0 chr13 24654442 24654473 -95090425 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr13 24654705 24654729 -95090169 + AT_rich Low_complexity Low_complexity 1 24 0 317 327 153 14 chr13 24654801 24655024 -95089874 + L1ME4a LINE L1 5392 5645 -2163 702 179 11 11 chr13 24655067 24655246 -95089652 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 268 301 114 40 chr13 24655582 24655881 -95089017 + L1ME4a LINE L1 5624 5944 -177 203 147 0 0 chr13 24655892 24655926 -95088972 + (TG)n Simple_repeat Simple_repeat 2 35 0 2317 79 0 3 chr13 24656529 24656821 -95088077 + AluY SINE Alu 2 292 -19 869 178 0 0 chr13 24657579 24657708 -95087190 - FLAM_A SINE Alu -4 129 1 525 309 88 41 chr13 24657710 24657847 -95087051 - L1M4 LINE L1 -1085 5061 4932 2062 179 2 54 chr13 24657847 24658256 -95086642 - MLT1B LTR MaLR 0 390 3 525 309 88 41 chr13 24658256 24658892 -95086006 - L1M4 LINE L1 -1214 4932 4252 1637 256 65 20 chr13 24659191 24659680 -95085218 + MER74B LTR ERVL 56 566 -56 668 183 69 92 chr13 24660089 24660213 -95084685 - L1MC5 LINE L1 -11 7950 7825 2545 44 0 7 chr13 24660213 24660509 -95084389 + AluY SINE Alu 1 294 -17 668 183 69 92 chr13 24660509 24660646 -95084252 - L1MC5 LINE L1 -136 7825 7695 218 274 147 20 chr13 24660751 24660853 -95084045 + MIR SINE MIR 19 133 -75 338 353 16 8 chr13 24661002 24661124 -95083774 + MIR SINE MIR 22 144 -118 368 211 64 9 chr13 24661212 24661321 -95083577 + Charlie7 DNA MER1_type 65 179 -2433 453 284 34 92 chr13 24661338 24661880 -95083018 - L1MEd LINE L1 -4869 1250 762 9130 95 0 1 chr13 24661996 24663180 -95081718 + THE1B-int LTR MaLR 398 1580 0 2429 113 73 14 chr13 24663180 24663524 -95081374 + THE1B LTR MaLR 1 364 0 1852 181 0 0 chr13 24663524 24663856 -95081042 + L1PA13 LINE L1 4126 4457 -1689 1763 124 0 16 chr13 24663856 24664113 -95080785 + AluSx SINE Alu 35 287 -25 805 99 9 0 chr13 24664131 24664242 -95080656 + THE1B LTR MaLR 253 364 0 6384 114 9 3 chr13 24664242 24665404 -95079494 + L1PA13 LINE L1 4995 6163 0 1552 202 34 3 chr13 24665914 24666211 -95078687 + AluJo SINE Alu 1 306 -6 226 290 0 0 chr13 24666476 24666538 -95078360 + GA-rich Low_complexity Low_complexity 3 64 0 1669 184 52 66 chr13 24666608 24667153 -95077745 + MER67C LTR ERV1 1 504 -10 22 0 0 0 chr13 24667919 24667941 -95076957 + AT_rich Low_complexity Low_complexity 1 22 0 4781 165 37 26 chr13 24668016 24669277 -95075621 + L1MB4 LINE L1 4909 6178 -2 622 273 53 76 chr13 24669389 24669731 -95075167 + L1ME3A LINE L1 4869 5196 -950 2402 74 0 0 chr13 24669731 24670027 -95074871 - AluY SINE Alu -15 296 1 622 273 53 76 chr13 24670027 24670226 -95074672 + L1ME3A LINE L1 5196 5398 -748 381 334 99 21 chr13 24670246 24670690 -95074208 + L1ME3A LINE L1 5470 5938 -232 2044 106 4 0 chr13 24670888 24671162 -95073736 + AluSc SINE Alu 33 307 -2 1698 74 0 52 chr13 24671553 24671783 -95073115 + AluSq SINE Alu 1 218 -95 617 172 125 8 chr13 24672068 24672196 -95072702 - MLT1B LTR MaLR -234 156 14 2254 105 0 0 chr13 24672270 24672565 -95072333 - AluSx SINE Alu -17 295 1 884 168 6 48 chr13 24673472 24673639 -95071259 - FRAM SINE Alu -17 159 1 1213 200 69 87 chr13 24673668 24673835 -95071063 + MLT1C LTR MaLR 7 176 -291 2059 122 0 3 chr13 24673835 24674129 -95070769 + AluSx SINE Alu 1 293 -19 1213 200 69 87 chr13 24674129 24674396 -95070502 + MLT1C LTR MaLR 176 433 -34 359 286 81 11 chr13 24674421 24674606 -95070292 + L2 LINE L2 1771 1968 -1346 196 272 201 41 chr13 24674760 24675028 -95069870 + L2 LINE L2 2341 2651 -663 2217 105 0 16 chr13 24675090 24675394 -95069504 + AluSx SINE Alu 3 301 -11 1801 151 15 48 chr13 24675401 24675733 -95069165 - MLT1A1 LTR MaLR -40 325 5 459 0 0 0 chr13 24675776 24675827 -95069071 + (TG)n Simple_repeat Simple_repeat 1 51 0 2324 132 14 3 chr13 24675827 24676190 -95068708 - L1MA9 LINE L1 -161 6151 5785 1725 265 32 2 chr13 24676436 24676847 -95068051 - MER70B LTR ERVL -152 426 4 2172 234 14 24 chr13 24676860 24677440 -95067458 - MER70B-int LTR ERVL 0 5023 4450 1192 204 32 22 chr13 24678123 24678559 -95066339 - MER70B-int LTR ERVL -1443 3580 3084 * 1494 163 112 14 chr13 24678556 24678851 -95066047 - MER70B-int LTR ERVL -2375 2648 2325 335 379 128 0 chr13 24678861 24679088 -95065810 - L1M3c LINE L1 -5884 257 2 270 165 273 66 chr13 24679132 24679253 -95065645 - L1MC4 LINE L1 -366 7676 7531 724 283 94 7 chr13 24679429 24679715 -95065183 - L1MC4 LINE L1 -443 7599 7289 1741 179 28 0 chr13 24679715 24680005 -95064893 + AluJb SINE Alu 1 298 -14 319 219 29 0 chr13 24681036 24681141 -95063757 + (TA)n Simple_repeat Simple_repeat 1 108 0 252 0 0 0 chr13 24681176 24681204 -95063694 + (TA)n Simple_repeat Simple_repeat 2 29 0 2485 58 0 16 chr13 24681204 24681515 -95063383 - AluY SINE Alu -5 306 1 189 0 0 0 chr13 24682172 24682193 -95062705 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1578 183 0 21 chr13 24682196 24682486 -95062412 - AluJb SINE Alu -28 284 1 327 207 17 52 chr13 24682492 24682608 -95062290 + Charlie7 DNA MER1_type 2435 2546 -66 2336 62 7 3 chr13 24682649 24682939 -95061959 + AluSq SINE Alu 1 291 -22 327 276 26 79 chr13 24683077 24683229 -95061669 - L2 LINE L2 -7 3306 3163 216 293 17 0 chr13 24683706 24683764 -95061134 + (CG)n Simple_repeat Simple_repeat 2 60 0 2673 48 0 0 chr13 24683950 24684260 -95060638 - AluY SINE Alu 0 311 2 365 274 0 12 chr13 24684794 24684878 -95060020 - MIR SINE MIR -153 109 27 1020 139 13 0 chr13 24684922 24685073 -95059825 - FRAM SINE Alu -24 152 1 358 259 35 26 chr13 24685158 24685274 -95059624 + MIR3 SINE MIR 86 202 -6 2329 102 16 0 chr13 24685808 24686112 -95058786 - AluSc SINE Alu 0 309 1 2231 90 3 0 chr13 24686231 24686520 -95058378 + AluSx SINE Alu 1 290 -22 208 279 47 58 chr13 24686869 24686955 -95057943 - L3b LINE CR1 -98 1485 1401 1841 224 56 18 chr13 24687120 24687567 -95057331 - MLT1D LTR MaLR -21 484 21 323 344 51 6 chr13 24687600 24687757 -95057141 - L3 LINE CR1 -41 1536 1373 215 349 48 0 chr13 24687880 24687963 -95056935 - L2 LINE L2 -4 3268 3182 5286 266 104 20 chr13 24688469 24688619 -95056279 - L2 LINE L2 0 3313 3177 1893 140 90 39 chr13 24688619 24688976 -95055922 + THE1C LTR MaLR 1 375 0 5286 266 104 20 chr13 24688976 24689595 -95055303 - L2 LINE L2 -136 3177 2611 2708 196 70 33 chr13 24689595 24690165 -95054733 + MLT1E LTR MaLR 1 591 -2 5286 266 104 20 chr13 24690165 24691499 -95053399 - L2 LINE L2 -702 2611 1032 4520 141 63 41 chr13 24691505 24691786 -95053112 + L1MCa LINE L1 579 852 -5574 3440 77 18 14 chr13 24691786 24692228 -95052670 - MLT2A1 LTR ERVL 0 444 1 4520 141 63 41 chr13 24692228 24692857 -95052041 + L1MCa LINE L1 852 1509 -4917 274 298 36 12 chr13 24692857 24692941 -95051957 - MIR SINE MIR -171 91 6 201 129 0 0 chr13 24692974 24693005 -95051893 + (CA)n Simple_repeat Simple_repeat 2 32 0 1318 283 97 36 chr13 24693137 24693553 -95051345 + L1MEc LINE L1 1213 1602 -4794 1854 112 71 4 chr13 24693553 24693848 -95051050 + AluSx SINE Alu 1 313 0 1318 283 97 36 chr13 24693848 24694176 -95050722 + L1MEc LINE L1 1602 2003 -4393 3551 166 22 37 chr13 24694249 24694918 -95049980 + MER67B LTR ERV1 1 659 -2 911 97 0 0 chr13 24694928 24695041 -95049857 + AluY SINE Alu 1 113 -198 657 234 27 11 chr13 24695041 24695225 -95049673 + L1MEc LINE L1 2856 3042 -3173 195 184 0 0 chr13 24695225 24695263 -95049635 + (TA)n Simple_repeat Simple_repeat 2 39 0 237 174 0 0 chr13 24695300 24695346 -95049552 + LTR66 LTR ERVL 394 439 -171 * 1899 201 37 5 chr13 24695332 24695703 -95049195 - MLT2D LTR ERVL -40 480 1 3630 212 117 41 chr13 24695703 24696991 -95047907 + L1M3 LINE L1 4004 5406 -760 2210 137 5 67 chr13 24696991 24697377 -95047521 + MLT1A1 LTR MaLR 4 365 0 3630 212 117 41 chr13 24697377 24697510 -95047388 + L1M3 LINE L1 5406 5528 -638 1565 189 31 18 chr13 24697524 24697587 -95047311 + MER45B DNA AcHobo 38 99 -941 2246 99 20 3 chr13 24697587 24697889 -95047009 - AluSq SINE Alu -6 307 1 1565 189 31 18 chr13 24697889 24698111 -95046787 + MER45B DNA AcHobo 99 327 -713 573 128 12 0 chr13 24698111 24698197 -95046701 + L1M3 LINE L1 5587 5673 -510 788 101 335 21 chr13 24698197 24698385 -95046513 + MER45B DNA AcHobo 790 1036 -4 495 250 0 0 chr13 24698387 24698487 -95046411 + L1ME LINE L1 5523 5622 -544 200 136 68 0 chr13 24699801 24699845 -95045053 + A-rich Low_complexity Low_complexity 1 47 0 474 336 94 0 chr13 24700109 24700332 -95044566 - MIR SINE MIR -8 254 11 184 263 0 0 chr13 24700445 24700483 -95044415 + L3b LINE CR1 1200 1237 -346 1141 284 83 43 chr13 24700630 24700864 -95044034 + LTR16B LTR ERVL 1 224 -240 2195 52 33 4 chr13 24700864 24701160 -95043738 + AluY SINE Alu 1 304 0 1141 284 83 43 chr13 24701160 24701368 -95043530 + LTR16B LTR ERVL 224 462 -2 2441 86 0 3 chr13 24701398 24701711 -95043187 + AluSx SINE Alu 1 312 0 193 340 0 0 chr13 24702484 24702534 -95042364 + MIR SINE MIR 64 113 -149 1920 132 17 20 chr13 24702916 24703212 -95041686 + AluJb SINE Alu 1 295 -17 346 280 347 19 chr13 24703917 24704037 -95040861 - L2 LINE L2 0 3272 3193 1111 175 123 32 chr13 24704037 24704289 -95040609 + ORSL DNA AcHobo 1 275 0 346 280 347 19 chr13 24704289 24704436 -95040462 - L2 LINE L2 -79 3193 2917 245 374 34 11 chr13 24705102 24705281 -95039617 - L2 LINE L2 -899 2415 2233 3119 195 33 0 chr13 24705283 24705827 -95039071 + MER68 LTR ERV1 1 562 0 218 291 13 38 chr13 24707851 24707930 -95036968 + MIR SINE MIR 3 79 -183 2282 104 0 3 chr13 24708661 24708968 -95035930 + AluSg SINE Alu 1 306 -4 211 360 47 23 chr13 24709267 24709439 -95035459 + L2 LINE L2 2612 2787 -527 253 194 163 51 chr13 24709821 24709919 -95034979 + L2 LINE L2 3204 3312 -1 25 65 0 0 chr13 24710814 24710860 -95034038 + AT_rich Low_complexity Low_complexity 1 46 0 662 268 28 6 chr13 24713350 24713529 -95031369 + MIR SINE MIR 79 261 -1 389 342 0 0 chr13 24713543 24713663 -95031235 + L2 LINE L2 3178 3297 -16 239 214 0 71 chr13 24713665 24713735 -95031163 - U4 snRNA snRNA -80 65 1 2201 102 0 7 chr13 24713857 24714165 -95030733 + AluSg SINE Alu 1 306 0 344 266 0 0 chr13 24714631 24714710 -95030188 + MLT1J2 LTR MaLR 84 162 -288 1196 185 19 0 chr13 24714791 24714996 -95029902 + MER3 DNA MER1_type 1 209 0 247 172 184 35 chr13 24715046 24715133 -95029765 + MLT1J1 LTR MaLR 347 446 0 31 44 0 0 chr13 24715977 24716022 -95028876 + AT_rich Low_complexity Low_complexity 1 45 0 283 330 34 11 chr13 24717752 24717840 -95027058 + MER5B DNA MER1_type 27 116 -62 1271 122 185 4 chr13 24719855 24720093 -95024805 - AluJo SINE Alu -17 285 5 237 207 276 11 chr13 24720823 24720910 -95023988 - L2 LINE L2 0 3313 3204 25 51 0 0 chr13 24721881 24721920 -95022978 + AT_rich Low_complexity Low_complexity 1 39 0 2383 97 0 0 chr13 24722084 24722383 -95022515 + AluSc SINE Alu 1 299 -10 2137 148 17 14 chr13 24722543 24722900 -95021998 - L1MB7 LINE L1 -9 6175 5818 800 275 174 28 chr13 24722991 24723387 -95021511 - LTR16A1 LTR ERVL -1 456 3 1989 319 59 18 chr13 24723471 24724794 -95020104 - HERV16 LTR ERVL -90 5344 3938 2591 317 37 9 chr13 24724859 24725843 -95019055 - HERV16 LTR ERVL -1926 3838 2828 371 236 47 8 chr13 24725849 24725976 -95018922 - Charlie5 DNA MER1_type -85 2527 2396 1698 309 61 19 chr13 24726809 24727081 -95017817 - HERV16 LTR ERVL -2923 2841 2582 420 139 0 70 chr13 24727081 24727167 -95017731 - MADE1 DNA Mariner 0 80 1 1698 309 61 19 chr13 24727167 24727651 -95017247 - HERV16 LTR ERVL -3182 2582 2053 * 2398 298 115 55 chr13 24727641 24728379 -95016519 - HERV16 LTR ERVL -3184 1812 1119 222 37 0 0 chr13 24728379 24728406 -95016492 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2398 298 115 55 chr13 24728406 24729377 -95015521 - HERV16 LTR ERVL -3877 1119 1 388 243 162 7 chr13 24729377 24729525 -95015373 - LTR16A1 LTR ERVL 0 457 287 769 188 5 124 chr13 24729931 24730065 -95014833 - MER5B DNA MER1_type 0 178 74 2300 107 3 0 chr13 24730065 24730363 -95014535 - AluSq SINE Alu -14 299 1 769 188 5 124 chr13 24730363 24730430 -95014468 - MER5B DNA MER1_type -104 74 1 216 270 135 18 chr13 24730431 24730542 -95014356 + L2 LINE L2 3190 3313 0 2299 94 0 23 chr13 24730828 24731136 -95013762 + AluSq SINE Alu 1 301 -12 816 123 0 72 chr13 24731149 24731287 -95013611 + FLAM_C SINE Alu 1 128 -15 2020 109 51 0 chr13 24731634 24731908 -95012990 - AluSg SINE Alu -22 288 1 2431 62 0 13 chr13 24732304 24732609 -95012289 - AluY SINE Alu -10 301 1 1749 196 0 7 chr13 24735074 24735380 -95009518 - AluJo SINE Alu -8 304 1 2291 119 0 0 chr13 24735903 24736214 -95008684 + AluSx SINE Alu 1 311 -1 2110 135 0 0 chr13 24736219 24736508 -95008390 + AluSx SINE Alu 3 291 -21 516 318 50 0 chr13 24736812 24736991 -95007907 - MIR SINE MIR -13 249 62 2343 95 0 0 chr13 24737323 24737619 -95007279 - AluSx SINE Alu -16 296 1 578 227 198 12 chr13 24737968 24738140 -95006758 + MIR SINE MIR 59 262 0 366 250 159 9 chr13 24738198 24738418 -95006480 - LTR16C LTR ERVL -16 475 223 2133 127 0 0 chr13 24738488 24738779 -95006119 + AluSx SINE Alu 1 291 -21 2035 136 27 0 chr13 24738833 24739134 -95005764 + AluSc SINE Alu 1 309 0 228 135 0 0 chr13 24739184 24739221 -95005677 + (CAT)n Simple_repeat Simple_repeat 2 38 0 319 292 42 0 chr13 24739647 24739743 -95005155 + MER5B DNA MER1_type 2 101 -77 3362 190 20 8 chr13 24739744 24740454 -95004444 - L1 LINE L1 -1120 5026 4309 273 160 0 0 chr13 24740454 24740504 -95004394 + Alu SINE Alu 259 308 0 430 240 33 8 chr13 24740535 24740656 -95004242 + L1MA9 LINE L1 6167 6290 -22 263 163 0 0 chr13 24740704 24740747 -95004151 + MER5B DNA MER1_type 136 178 0 4353 141 15 51 chr13 24740869 24741695 -95003203 + L1MA9 LINE L1 5021 5875 -437 2473 99 0 0 chr13 24741695 24742007 -95002891 + AluSq SINE Alu 1 312 -1 4353 141 15 51 chr13 24742007 24742254 -95002644 + L1MA9 LINE L1 5875 6141 -171 2327 92 0 3 chr13 24742254 24742557 -95002341 + AluSx SINE Alu 1 302 -10 4353 141 15 51 chr13 24742557 24742702 -95002196 + L1MA9 LINE L1 6141 6290 -22 2398 43 0 4 chr13 24742718 24743028 -95001870 + AluY SINE Alu 2 310 0 967 331 30 48 chr13 24744248 24744743 -95000155 + L2 LINE L2 994 1479 -1835 1121 256 59 22 chr13 24744757 24745235 -94999663 + MLT1H LTR MaLR 14 547 -2 222 333 21 10 chr13 24745255 24745351 -94999547 + L2 LINE L2 1493 1589 -1725 662 219 121 47 chr13 24745581 24745796 -94999102 - MIR SINE MIR -27 235 5 1185 284 94 95 chr13 24745810 24745929 -94998969 + L2 LINE L2 1802 1920 -1393 708 217 66 40 chr13 24745929 24746155 -94998743 + MER106A DNA MER1_type 1 232 -4 1185 284 94 95 chr13 24746155 24746919 -94997979 + L2 LINE L2 1920 2683 -630 1024 128 6 6 chr13 24746919 24747099 -94997799 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 189 0 0 0 chr13 24747108 24747129 -94997769 + (TCCA)n Simple_repeat Simple_repeat 3 23 0 1185 284 94 95 chr13 24747129 24747577 -94997321 + L2 LINE L2 2691 3135 -178 1991 139 9 22 chr13 24749176 24749492 -94995406 + AluJo SINE Alu 1 312 0 185 291 73 0 chr13 24750108 24750163 -94994735 - L2 LINE L2 0 3272 3214 198 118 0 0 chr13 24751333 24751367 -94993531 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 318 26 0 0 chr13 24755051 24755090 -94989808 + (TG)n Simple_repeat Simple_repeat 1 39 0 804 260 35 31 chr13 24755170 24755424 -94989474 - MIR SINE MIR 0 262 8 198 0 0 0 chr13 24755658 24755680 -94989218 + (TG)n Simple_repeat Simple_repeat 2 23 0 317 349 128 13 chr13 24755722 24755871 -94989027 + MIR3 SINE MIR 16 181 -27 1842 160 29 29 chr13 24756394 24756738 -94988160 - MER2 DNA MER2_type 0 344 1 423 320 79 57 chr13 24756944 24757172 -94987726 - L2 LINE L2 0 3272 3040 2863 142 43 13 chr13 24758468 24759002 -94985896 - L1MB7 LINE L1 -19 6165 5616 2502 55 3 0 chr13 24760291 24760598 -94984300 - AluY SINE Alu -3 308 1 2064 107 10 0 chr13 24760614 24760903 -94983995 - AluSq SINE Alu -21 292 1 2385 61 0 3 chr13 24760914 24761211 -94983687 - AluY SINE Alu -15 296 1 24 0 0 0 chr13 24761371 24761395 -94983503 + AT_rich Low_complexity Low_complexity 1 24 0 848 173 31 19 chr13 24761427 24761443 -94983455 - FRAM SINE Alu -137 165 151 180 0 0 0 chr13 24761443 24761463 -94983435 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 848 173 31 19 chr13 24761463 24761608 -94983290 - FRAM SINE Alu -151 151 2 363 216 11 0 chr13 24761690 24761778 -94983120 - L1MA4A LINE L1 -26 6277 6189 2960 160 14 10 chr13 24761784 24762366 -94982532 - L1MA4A LINE L1 -183 6120 5537 238 356 113 52 chr13 24762366 24762596 -94982302 - L2 LINE L2 -38 3234 2991 976 294 172 19 chr13 24762825 24763522 -94981376 - L2 LINE L2 -362 2952 2149 412 253 207 5 chr13 24764749 24764947 -94979951 - L1MC4a LINE L1 -1903 5905 5668 513 0 0 0 chr13 24765421 24765478 -94979420 + (CA)n Simple_repeat Simple_repeat 2 58 0 1726 181 0 0 chr13 24765493 24765764 -94979134 - AluJo SINE Alu -21 291 21 200 35 35 0 chr13 24767023 24767052 -94977846 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3486 169 100 43 chr13 24767206 24767276 -94977622 - L1MB8 LINE L1 0 6178 6113 2340 108 3 0 chr13 24767276 24767573 -94977325 + AluSq SINE Alu 1 298 -15 3486 169 100 43 chr13 24767573 24768406 -94976492 - L1MB8 LINE L1 -65 6113 5225 3728 109 51 149 chr13 24768406 24768692 -94976206 - Tigger3(Golem) DNA MER2_type 0 3029 2717 1425 194 14 25 chr13 24768692 24768976 -94975922 + AluJo SINE Alu 1 281 -31 3728 109 51 149 chr13 24768976 24769381 -94975517 - Tigger3(Golem) DNA MER2_type -312 2717 2274 505 149 11 11 chr13 24769381 24769468 -94975430 + AluJ/FLAM SINE Alu 1 87 -225 3728 109 51 149 chr13 24769468 24770082 -94974816 - Tigger3(Golem) DNA MER2_type -755 2274 1 1205 196 237 7 chr13 24770086 24770524 -94974374 - L1MB8 LINE L1 -937 5209 4671 21 0 0 0 chr13 24770706 24770727 -94974171 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 24770827 24770850 -94974048 + AT_rich Low_complexity Low_complexity 1 23 0 402 291 102 20 chr13 24771256 24771510 -94973388 - L1MC4a LINE L1 -439 5682 5408 2398 92 0 0 chr13 24771595 24771901 -94972997 - AluY SINE Alu -5 306 1 461 322 115 29 chr13 24772072 24772550 -94972348 - L1MC4a LINE L1 -1087 5059 4541 422 189 75 0 chr13 24772682 24772788 -94972110 - MER53 DNA DNA -75 114 1 2259 79 7 0 chr13 24773044 24773322 -94971576 - AluSc SINE Alu -20 289 10 214 278 12 33 chr13 24773539 24773634 -94971264 + MIR SINE MIR 49 144 -64 23 0 0 0 chr13 24773724 24773747 -94971151 + AT_rich Low_complexity Low_complexity 1 23 0 552 316 130 3 chr13 24775076 24775361 -94969537 + L3 LINE CR1 1251 1571 -6 256 297 0 62 chr13 24775626 24775754 -94969144 - L2 LINE L2 -829 2485 2366 239 308 15 0 chr13 24775856 24775921 -94968977 + L1MC4 LINE L1 6934 6999 -1043 1574 187 59 9 chr13 24775932 24776253 -94968645 - MER2 DNA MER2_type 0 345 9 1250 293 74 31 chr13 24776330 24777071 -94967827 + L1MC4 LINE L1 7109 7881 -161 258 32 0 0 chr13 24777139 24777170 -94967728 + (TG)n Simple_repeat Simple_repeat 2 32 0 526 224 28 47 chr13 24777646 24777871 -94967027 - L1M4 LINE L1 -681 5497 5275 1039 168 5 10 chr13 24777969 24778172 -94966726 + L1PB1 LINE L1 3 204 -6659 * 12425 184 40 31 chr13 24778163 24780498 -94964400 + L1PB1 LINE L1 1113 3426 -3441 2181 104 0 3 chr13 24780498 24780785 -94964113 + AluSc SINE Alu 1 286 -23 2257 99 7 3 chr13 24780788 24781092 -94963806 + AluSg SINE Alu 1 305 -5 12425 184 40 31 chr13 24781092 24782130 -94962768 + L1PB1 LINE L1 3427 4454 -2413 2088 112 25 0 chr13 24782130 24782436 -94962462 + AluSq SINE Alu 3 315 0 12425 184 40 31 chr13 24782436 24783066 -94961832 + L1PB1 LINE L1 4454 5077 -1790 243 88 0 0 chr13 24783066 24783100 -94961798 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 12425 184 40 31 chr13 24783100 24784458 -94960440 + L1PB1 LINE L1 5077 6505 -362 459 18 0 0 chr13 24784470 24784525 -94960373 - AluSg/x SINE Alu -43 266 212 2511 104 6 6 chr13 24784532 24784897 -94960001 + L1PB1 LINE L1 6501 6865 -2 401 251 134 40 chr13 24785032 24785135 -94959763 - L1M4 LINE L1 -901 5245 5153 2206 104 0 3 chr13 24785135 24785432 -94959466 - AluSg SINE Alu -14 296 1 401 251 134 40 chr13 24785432 24785603 -94959295 - L1M4 LINE L1 -993 5153 4945 780 197 45 155 chr13 24785609 24785945 -94958953 - L1M4 LINE L1 -1379 4767 4396 1630 145 80 0 chr13 24785945 24786207 -94958691 - AluSx SINE Alu -27 285 3 780 197 45 155 chr13 24786207 24786222 -94958676 - L1M4 LINE L1 -1750 4396 4381 2361 90 7 0 chr13 24786222 24786522 -94958376 - AluSc SINE Alu -7 302 1 780 197 45 155 chr13 24786522 24786723 -94958175 - L1M4 LINE L1 -1765 4381 4275 2299 81 0 0 chr13 24786724 24787019 -94957879 - AluY SINE Alu -16 295 1 210 37 0 0 chr13 24787972 24787999 -94956899 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2123 112 7 14 chr13 24788004 24788299 -94956599 + AluSg SINE Alu 1 293 -17 1473 138 53 0 chr13 24788305 24788530 -94956368 + Tigger3(Golem) DNA MER2_type 2791 3027 -2 279 272 103 70 chr13 24788655 24788956 -94955942 - HAL1 LINE L1 -4 2503 2193 797 256 30 0 chr13 24788964 24789163 -94955735 - HAL1 LINE L1 -677 1830 1626 477 176 33 0 chr13 24789443 24789534 -94955364 + MER5A DNA MER1_type 9 102 -87 612 308 26 51 chr13 24789604 24789877 -94955021 - MLT1J LTR MaLR -235 276 11 696 223 30 72 chr13 24789877 24790182 -94954716 - HAL1 LINE L1 -899 1608 1317 312 93 0 0 chr13 24790186 24790229 -94954669 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 299 241 90 24 chr13 24790277 24790443 -94954455 - HAL1 LINE L1 -1341 1166 990 279 27 41 178 chr13 24790454 24790485 -94954413 - L1MA8 LINE L1 -6 6285 6268 2025 117 13 10 chr13 24790485 24790785 -94954113 + AluSx SINE Alu 1 301 -11 279 27 41 178 chr13 24790785 24790826 -94954072 - L1MA8 LINE L1 -23 6268 6223 4048 154 70 14 chr13 24790850 24791293 -94953605 - L1MA8 LINE L1 -6 6294 5877 915 193 6 0 chr13 24791293 24791454 -94953444 - AluJo SINE Alu -4 298 137 4048 154 70 14 chr13 24791454 24791897 -94953001 - L1MA8 LINE L1 -423 5877 5322 2150 112 10 0 chr13 24791902 24792205 -94952693 - AluSc SINE Alu -3 306 1 353 296 112 34 chr13 24792258 24792464 -94952434 - HAL1 LINE L1 -1608 899 678 686 254 107 43 chr13 24792488 24792928 -94951970 - MER110A LTR ERV1 0 468 1 6620 257 102 69 chr13 24793070 24794934 -94949964 - MER110A-int LTR ERV1 -74 4573 2580 1239 171 42 114 chr13 24794934 24795337 -94949561 - MLT1A2 LTR MaLR 0 374 1 6620 257 102 69 chr13 24795337 24796312 -94948586 - MER110A-int LTR ERV1 -2067 2580 1639 1151 170 22 31 chr13 24796441 24796670 -94948228 - Tigger3(Golem) DNA MER2_type 0 3029 2803 280 277 15 0 chr13 24796645 24796710 -94948188 - Tigger3(Golem) DNA MER2_type -2963 66 1 * 255 272 0 87 chr13 24796711 24796814 -94948084 - MER110A-int LTR ERV1 -3170 1477 1384 307 301 43 21 chr13 24796873 24796966 -94947932 - MER110A-int LTR ERV1 -3295 1352 1258 768 217 133 6 chr13 24796994 24797160 -94947738 - MER58C DNA MER1_type 0 215 29 358 191 0 29 chr13 24797341 24797409 -94947489 - Tigger7 DNA MER2_type 0 2491 2426 1458 167 15 15 chr13 24797439 24797703 -94947195 - Tigger7 DNA MER2_type -2223 264 1 305 296 111 0 chr13 24797714 24797849 -94947049 - MER110A-int LTR ERV1 -3969 678 529 * 381 286 8 25 chr13 24797829 24797948 -94946950 - MER89-int LTR ERV1 -4124 2677 2561 261 333 35 0 chr13 24798169 24798256 -94946642 - MER89-int LTR ERV1 -4432 215 126 189 0 0 0 chr13 24798376 24798397 -94946501 + (T)n Simple_repeat Simple_repeat 1 21 0 392 339 32 32 chr13 24798497 24798866 -94946032 - MER89-int LTR ERV1 -4441 2360 1992 254 327 71 0 chr13 24799764 24799877 -94945021 - L2 LINE L2 -604 2710 2590 542 153 119 42 chr13 24800034 24800152 -94944746 - AluJo SINE Alu -172 130 4 575 230 52 110 chr13 24800328 24800468 -94944430 - L1MEc LINE L1 -3143 3072 2926 1635 116 8 27 chr13 24800468 24800726 -94944172 - AluSx SINE Alu -16 296 44 575 230 52 110 chr13 24800726 24800967 -94943931 - L1MEc LINE L1 -3289 2926 2713 295 236 9 27 chr13 24801012 24801122 -94943776 - L1MEc LINE L1 -3767 2448 2341 2176 112 0 7 chr13 24801145 24801450 -94943448 + AluSg1 SINE Alu 1 303 -6 324 222 204 57 chr13 24801542 24801718 -94943180 - L1MEc LINE L1 -4164 2232 2031 1483 167 3 97 chr13 24801800 24802130 -94942768 - AluJo SINE Alu -3 299 1 806 286 80 36 chr13 24802228 24802952 -94941946 - L1MEc LINE L1 -4616 1780 1025 2345 102 3 0 chr13 24803785 24804090 -94940808 - AluSx SINE Alu -6 306 1 1593 200 58 90 chr13 24804322 24804822 -94940076 + MLT1D LTR MaLR 22 505 0 806 227 62 0 chr13 24805282 24805476 -94939422 - MER3 DNA MER1_type -1 208 3 458 279 192 0 chr13 24805566 24805738 -94939160 + MIR SINE MIR 51 255 -7 414 329 37 0 chr13 24805845 24806009 -94938889 + L2 LINE L2 1728 1897 -1417 677 273 129 5 chr13 24806035 24806244 -94938654 + MIR SINE MIR 1 235 -27 2474 71 0 0 chr13 24806304 24806600 -94938298 - AluY SINE Alu -15 296 1 540 362 21 11 chr13 24806625 24806907 -94937991 + L2 LINE L2 1994 2278 -1036 1147 192 19 41 chr13 24806907 24806936 -94937962 - L1MB3 LINE L1 -24 6159 6131 1788 100 117 18 chr13 24806936 24807217 -94937681 - AluSg SINE Alu -1 309 1 1147 192 19 41 chr13 24807217 24807453 -94937445 - L1MB3 LINE L1 -52 6131 5900 2220 124 20 13 chr13 24807489 24807939 -94936959 - MER1A DNA MER1_type -2 527 1 225 274 16 0 chr13 24808447 24808509 -94936389 + CT-rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr13 24808509 24808533 -94936365 + AT_rich Low_complexity Low_complexity 1 24 0 501 300 125 82 chr13 24808542 24809125 -94935773 - MLT1L LTR MaLR -2 613 6 5298 72 0 27 chr13 24809171 24809878 -94935020 + LTR12 LTR ERV1 1 688 0 196 297 50 40 chr13 24810286 24810387 -94934511 + L2 LINE L2 3175 3276 -37 235 270 165 9 chr13 24810741 24810856 -94934042 - MIR SINE MIR -30 232 100 185 65 32 0 chr13 24812575 24812606 -94932292 + (TG)n Simple_repeat Simple_repeat 2 33 0 393 226 158 8 chr13 24812781 24812914 -94931984 + MIR SINE MIR 2 154 -108 4318 156 228 42 chr13 24812964 24813227 -94931671 + L1MB3 LINE L1 21 234 -6150 1853 161 0 3 chr13 24813227 24813512 -94931386 + AluJb SINE Alu 1 284 -28 4318 156 228 42 chr13 24813512 24814373 -94930525 + L1MB3 LINE L1 234 1355 -5029 * 9340 213 55 34 chr13 24814365 24816336 -94928562 + L1MB3 LINE L1 2615 4543 -1876 2277 108 3 3 chr13 24816336 24816641 -94928257 + AluSq SINE Alu 1 305 -8 9340 213 55 34 chr13 24816641 24817268 -94927630 + L1MB3 LINE L1 4543 5155 -1264 1739 164 0 46 chr13 24817268 24817591 -94927307 + AluJo SINE Alu 1 308 -4 9340 213 55 34 chr13 24817591 24818716 -94926182 + L1MB3 LINE L1 5155 6418 -1 208 254 8 8 chr13 24818898 24819028 -94925870 + (TA)n Simple_repeat Simple_repeat 1 130 0 1169 140 68 162 chr13 24820280 24820693 -94924205 - MLT1A2 LTR MaLR 0 374 1 278 317 26 37 chr13 24821003 24821186 -94923712 - L1ME LINE L1 -482 5682 5499 224 240 20 0 chr13 24822256 24822306 -94922592 + L2 LINE L2 3225 3275 -38 430 324 77 12 chr13 24822594 24822841 -94922057 - MER90 LTR ERV1 -18 557 295 1090 284 66 58 chr13 24823352 24823925 -94920973 - MER110-int LTR ERV1 -1337 3310 2733 28 61 0 0 chr13 24824375 24824424 -94920474 + AT_rich Low_complexity Low_complexity 1 49 0 2170 125 0 0 chr13 24824686 24824990 -94919908 + AluSx SINE Alu 3 306 -6 27 62 0 0 chr13 24825018 24825066 -94919832 + AT_rich Low_complexity Low_complexity 1 48 0 609 259 52 42 chr13 24825702 24825988 -94918910 - HAL1 LINE L1 -974 1533 1245 598 310 51 16 chr13 24826107 24826362 -94918536 - HAL1 LINE L1 -2240 267 4 24 0 0 0 chr13 24826500 24826524 -94918374 + AT_rich Low_complexity Low_complexity 1 24 0 2284 102 0 3 chr13 24826630 24826944 -94917954 - AluSq SINE Alu 0 313 1 242 346 0 12 chr13 24827037 24827118 -94917780 + L2 LINE L2 2888 2967 -305 5779 168 90 33 chr13 24827180 24827350 -94917548 - L1MA3 LINE L1 -7 6298 6139 1964 136 17 0 chr13 24827350 24827645 -94917253 - AluSx SINE Alu -12 300 1 5779 168 90 33 chr13 24827645 24829381 -94915517 - L1MA3 LINE L1 -166 6139 4228 1888 107 0 0 chr13 24829381 24829623 -94915275 + AluSx SINE Alu 38 279 -33 5779 168 90 33 chr13 24829623 24829923 -94914975 - L1MA3 LINE L1 -2077 4228 3947 1005 154 35 0 chr13 24830042 24830211 -94914687 + Tigger4(Zombi) DNA MER2_type 5 179 -2552 * 2769 109 32 32 chr13 24830209 24830283 -94914615 + Tigger4(Zombi) DNA MER2_type 2265 2338 -393 2062 141 0 0 chr13 24830283 24830581 -94914317 - AluSq SINE Alu -15 298 1 2769 109 32 32 chr13 24830581 24830973 -94913925 + Tigger4(Zombi) DNA MER2_type 2337 2731 0 27 73 0 0 chr13 24831837 24831892 -94913006 + AT_rich Low_complexity Low_complexity 1 55 0 419 359 138 26 chr13 24831930 24832540 -94912358 + L2 LINE L2 1341 2018 -1296 360 310 139 66 chr13 24832542 24833045 -94911853 + L2 LINE L2 2171 2710 -604 306 0 0 0 chr13 24833062 24833096 -94911802 + (CAA)n Simple_repeat Simple_repeat 2 35 0 363 78 0 0 chr13 24833254 24833305 -94911593 + (CA)n Simple_repeat Simple_repeat 2 52 0 824 229 19 33 chr13 24833314 24833528 -94911370 + Charlie1 DNA MER1_type 10 220 -2541 553 189 53 8 chr13 24833524 24833656 -94911242 + Charlie1 DNA MER1_type 2622 2759 -2 * 2627 36 0 3 chr13 24833692 24833995 -94910903 - AluY SINE Alu -9 302 1 365 255 229 38 chr13 24834065 24834222 -94910676 + L2 LINE L2 3124 3310 -3 514 339 38 6 chr13 24834412 24834595 -94910303 + MIR3 SINE MIR 15 203 -5 28 86 0 0 chr13 24834624 24834694 -94910204 + AT_rich Low_complexity Low_complexity 1 70 0 24 0 0 0 chr13 24835094 24835118 -94909780 + AT_rich Low_complexity Low_complexity 1 24 0 564 217 159 16 chr13 24835921 24836110 -94908788 + L1ME3A LINE L1 5945 6160 -10 1247 248 149 26 chr13 24836215 24836837 -94908061 - L1M4 LINE L1 -945 5201 4503 341 57 0 19 chr13 24836837 24836890 -94908008 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr13 24836890 24836915 -94907983 + AT_rich Low_complexity Low_complexity 1 25 0 1127 256 83 2 chr13 24836923 24837334 -94907564 - L1M4 LINE L1 -1843 4303 3860 532 196 26 26 chr13 24837327 24837480 -94907418 - L1M4 LINE L1 -3206 2940 2788 * 507 237 7 40 chr13 24837478 24837630 -94907268 + L1MC5 LINE L1 7696 7842 -119 * 2270 105 0 0 chr13 24838272 24838566 -94906332 - AluSg SINE Alu -16 294 1 24 0 0 0 chr13 24838845 24838869 -94906029 + AT_rich Low_complexity Low_complexity 1 24 0 2205 81 21 0 chr13 24839070 24839354 -94905544 - AluSc SINE Alu -19 290 1 521 233 25 17 chr13 24839553 24839701 -94905197 + MIR SINE MIR 38 254 -8 1679 175 0 36 chr13 24839933 24840264 -94904634 - MLT1B LTR MaLR -2 388 70 * 4026 108 107 153 chr13 24840258 24841033 -94903865 - Tigger3b DNA MER2_type -1797 1232 423 2896 131 31 6 chr13 24841033 24841514 -94903384 - L1PA16 LINE L1 0 6166 5674 4026 108 107 153 chr13 24841514 24841619 -94903279 - Tigger3b DNA MER2_type -2606 423 315 1652 138 71 25 chr13 24841619 24841902 -94902996 + AluSx SINE Alu 1 296 -16 4026 108 107 153 chr13 24841902 24842324 -94902574 - Tigger3b DNA MER2_type -2714 315 1 497 132 13 0 chr13 24842324 24842400 -94902498 - MLT1B LTR MaLR -313 77 1 2104 113 3 7 chr13 24842523 24842824 -94902074 - AluSx SINE Alu -12 300 1 287 328 17 17 chr13 24842977 24843093 -94901805 - L2 LINE L2 0 3272 3157 662 303 29 29 chr13 24843202 24843446 -94901452 + MIR SINE MIR 10 253 -9 21 0 0 0 chr13 24844312 24844333 -94900565 + AT_rich Low_complexity Low_complexity 1 21 0 4050 174 38 38 chr13 24844633 24845441 -94899457 + L1MB4 LINE L1 5200 6012 -168 1683 120 59 115 chr13 24845441 24845798 -94899100 + MER1B DNA MER1_type 1 337 0 4050 174 38 38 chr13 24845798 24845968 -94898930 + L1MB4 LINE L1 6012 6180 0 21 57 0 0 chr13 24846598 24846633 -94898265 + AT_rich Low_complexity Low_complexity 1 35 0 262 285 57 55 chr13 24846741 24846872 -94898026 + MIR SINE MIR 51 183 -65 2062 141 20 3 chr13 24846998 24847339 -94897559 + MER7A DNA MER2_type 2 346 0 30 27 0 0 chr13 24847788 24847825 -94897073 + AT_rich Low_complexity Low_complexity 1 37 0 38 51 0 0 chr13 24848969 24849028 -94895870 + AT_rich Low_complexity Low_complexity 1 59 0 2360 77 0 3 chr13 24849067 24849377 -94895521 - AluY SINE Alu -2 309 1 24 53 0 0 chr13 24851054 24851092 -94893806 + AT_rich Low_complexity Low_complexity 1 38 0 2139 105 33 18 chr13 24851339 24851671 -94893227 + MER1B DNA MER1_type 1 337 0 2241 102 0 3 chr13 24852195 24852499 -94892399 + AluSg1 SINE Alu 1 303 -6 822 210 17 17 chr13 24852977 24853153 -94891745 + MER97b DNA MER1_type? 2 177 -876 2093 174 22 29 chr13 24854464 24854878 -94890020 - MLT2D LTR ERVL 0 414 4 2294 76 20 13 chr13 24854881 24855183 -94889715 + AluY SINE Alu 1 304 -7 1958 126 3 13 chr13 24855391 24855693 -94889205 + L1MB3 LINE L1 5533 5831 -352 1342 156 15 0 chr13 24855693 24855898 -94889000 + AluJo SINE Alu 86 293 -19 1681 96 123 15 chr13 24855918 24856242 -94888656 + L1MB3 LINE L1 5821 6179 -4 2159 134 0 3 chr13 24856569 24856876 -94888022 - AluSx SINE Alu -6 306 1 822 161 0 0 chr13 24857040 24857158 -94887740 + FLAM_C SINE Alu 7 124 -19 295 279 74 49 chr13 24857452 24857574 -94887324 + L2 LINE L2 3147 3271 -1 2104 168 6 6 chr13 24858199 24858562 -94886336 - MER47A DNA MER2_type -2 364 2 881 135 0 0 chr13 24858616 24858790 -94886108 - FLAM_C SINE Alu 0 174 1 2812 178 23 48 chr13 24859010 24859072 -94885826 - MLT2B3 LTR ERVL 0 554 492 494 70 14 0 chr13 24859072 24859143 -94885755 + (TGGA)n Simple_repeat Simple_repeat 3 74 0 2812 178 23 48 chr13 24859143 24859648 -94885250 - MLT2B3 LTR ERVL -62 492 1 21 0 0 0 chr13 24859854 24859875 -94885023 + AT_rich Low_complexity Low_complexity 1 21 0 2167 82 0 24 chr13 24859915 24860206 -94884692 + AluY SINE Alu 16 299 -12 751 167 0 53 chr13 24860380 24860530 -94884368 - FLAM_C SINE Alu -1 142 1 236 309 21 53 chr13 24860931 24861025 -94883873 - MIR SINE MIR -76 132 42 550 230 86 89 chr13 24861025 24861282 -94883616 - MER112 DNA MER1_type 0 260 5 26 0 0 0 chr13 24863420 24863446 -94881452 + AT_rich Low_complexity Low_complexity 1 26 0 331 191 119 0 chr13 24864315 24864399 -94880499 + MIR SINE MIR 52 145 -117 389 331 8 16 chr13 24864497 24864618 -94880280 + L2 LINE L2 3194 3313 0 419 353 111 16 chr13 24865062 24865252 -94879646 + L2 LINE L2 2553 2760 -554 559 207 21 14 chr13 24865317 24865462 -94879436 - MER104 DNA Tc2 -32 148 3 612 251 72 32 chr13 24865664 24865943 -94878955 - L1M4 LINE L1 -2225 3921 3632 1183 143 4 78 chr13 24866009 24866239 -94878659 + AluJb SINE Alu 1 213 -99 2000 136 0 3 chr13 24866690 24866984 -94877914 - AluSx SINE Alu -19 293 1 1478 170 50 40 chr13 24866984 24867284 -94877614 - AluJb SINE Alu -9 303 1 290 348 0 0 chr13 24867489 24867578 -94877320 - L2 LINE L2 -568 2746 2658 222 213 11 96 chr13 24868123 24868217 -94876681 + MIR SINE MIR 66 151 -57 215 211 28 28 chr13 24868549 24868620 -94876278 + CT-rich Low_complexity Low_complexity 4 74 0 194 357 85 39 chr13 24870888 24871017 -94873881 - L2 LINE L2 -6 3266 3132 333 313 48 54 chr13 24871069 24871216 -94873682 + MIR3 SINE MIR 55 200 -8 1781 166 7 7 chr13 24871958 24872266 -94872632 + AluJb SINE Alu 3 310 -2 1217 237 177 28 chr13 24872282 24872864 -94872034 - HAL1b LINE L1 -76 1272 604 975 280 131 32 chr13 24872990 24874093 -94870805 - HAL1 LINE L1 -632 1875 586 427 311 90 0 chr13 24874221 24874388 -94870510 + L2 LINE L2 2946 3127 -186 346 164 44 0 chr13 24874719 24874809 -94870089 + L1MD3 LINE L1 7725 7992 -3 181 324 29 15 chr13 24875434 24875502 -94869396 - L2 LINE L2 -95 3218 3150 2161 108 10 0 chr13 24875667 24875963 -94868935 - AluSx SINE Alu -13 299 1 2176 124 0 0 chr13 24876219 24876526 -94868372 + AluSx SINE Alu 1 307 -5 764 184 0 0 chr13 24877784 24877909 -94866989 - FLAM_A SINE Alu -8 125 1 188 300 0 0 chr13 24878562 24878612 -94866286 - L2 LINE L2 -6 3266 3217 2209 109 0 3 chr13 24878828 24879130 -94865768 - AluSg SINE Alu -9 301 1 24 0 0 0 chr13 24879379 24879403 -94865495 + AT_rich Low_complexity Low_complexity 1 24 0 225 211 0 0 chr13 24879810 24879867 -94865031 + T-rich Low_complexity Low_complexity 1 57 0 445 308 33 0 chr13 24880922 24881042 -94863856 - L2 LINE L2 -1 3312 3189 908 94 8 8 chr13 24881710 24881837 -94863061 + AluSp SINE Alu 38 164 -149 1142 103 0 24 chr13 24881843 24882008 -94862890 + AluSp SINE Alu 139 299 -14 22 35 0 0 chr13 24883367 24883396 -94861502 + AT_rich Low_complexity Low_complexity 1 29 0 247 257 14 0 chr13 24884556 24884626 -94860272 + CT-rich Low_complexity Low_complexity 2 72 0 2193 101 28 0 chr13 24885198 24885484 -94859414 + AluSc SINE Alu 1 294 -15 323 336 39 0 chr13 24885712 24885840 -94859058 + MER5A DNA MER1_type 57 189 0 809 258 47 13 chr13 24885956 24886189 -94858709 - MIR SINE MIR 0 262 22 536 231 142 35 chr13 24886245 24886414 -94858484 + MER3 DNA MER1_type 1 187 -22 497 273 145 18 chr13 24888092 24888319 -94856579 + MIR SINE MIR 1 256 -6 343 268 255 6 chr13 24888323 24888480 -94856418 + MIR SINE MIR 1 196 -66 243 333 83 0 chr13 24888510 24888606 -94856292 - MIR SINE MIR -133 129 26 431 205 4 19 chr13 24889544 24889784 -94855114 + AluJo SINE Alu 1 297 -15 2194 117 10 0 chr13 24892155 24892464 -94852434 - AluSx SINE Alu 0 312 1 252 331 91 34 chr13 24892686 24892861 -94852037 + L2 LINE L2 2110 2294 -1020 306 260 82 34 chr13 24892880 24893026 -94851872 + L2 LINE L2 3073 3225 -88 631 279 205 52 chr13 24893042 24893814 -94851084 + L2 LINE L2 2156 3126 -187 2333 101 0 0 chr13 24893814 24894110 -94850788 + AluSx SINE Alu 1 296 -16 631 279 205 52 chr13 24894110 24894333 -94850565 + L2 LINE L2 3126 3313 0 269 239 42 0 chr13 24894333 24894404 -94850494 + L2 LINE L2 2301 2374 -940 502 223 7 0 chr13 24894418 24894557 -94850341 - AluJb SINE Alu 0 312 173 331 321 3 20 chr13 24894575 24894797 -94850101 + C-rich Low_complexity Low_complexity 1 218 0 1753 118 8 0 chr13 24895081 24895327 -94849571 - AluSx SINE Alu -64 248 1 858 129 0 0 chr13 24895562 24895678 -94849220 + FLAM_C SINE Alu 1 116 -17 306 0 0 0 chr13 24895680 24895714 -94849184 + (CA)n Simple_repeat Simple_repeat 2 35 0 1787 161 0 24 chr13 24896162 24896454 -94848444 - AluJo SINE Alu -26 286 2 436 308 86 69 chr13 24896885 24897153 -94847745 - L2 LINE L2 0 3313 3032 636 65 13 0 chr13 24897153 24897230 -94847668 - MADE1 DNA Mariner 0 80 3 436 308 86 69 chr13 24897230 24897439 -94847459 - L2 LINE L2 -281 3032 2828 666 263 82 73 chr13 24897678 24898252 -94846646 + L2 LINE L2 2621 3184 -129 187 279 221 19 chr13 24898300 24898404 -94846494 + MIR SINE MIR 28 152 -110 497 222 152 41 chr13 24898516 24898687 -94846211 - MIR SINE MIR -42 220 31 530 353 27 20 chr13 24899380 24899675 -94845223 + LTR16C LTR ERVL 193 489 -2 985 230 59 0 chr13 24899995 24900234 -94844664 + MERVL LTR ERVL 2427 2679 -2806 2835 206 180 9 chr13 24900242 24901019 -94843879 + L1M4c LINE L1 27 936 -5448 1250 115 6 0 chr13 24901019 24901193 -94843705 + AluSc SINE Alu 132 306 -3 776 211 66 9 chr13 24901200 24901413 -94843485 + L1M4c LINE L1 923 1147 -5237 * 1864 190 37 19 chr13 24901412 24902000 -94842898 + L1M4c LINE L1 2121 2716 -3666 2272 219 30 52 chr13 24902036 24902632 -94842266 + L1M4c LINE L1 4057 4636 -1746 2153 139 0 0 chr13 24902632 24902933 -94841965 + AluSx SINE Alu 1 301 -11 2272 219 30 52 chr13 24902933 24903045 -94841853 + L1M4c LINE L1 4636 4749 -1633 1160 203 61 12 chr13 24903138 24903384 -94841514 - AluJo SINE Alu -10 302 45 279 54 0 0 chr13 24903384 24903421 -94841477 + (TTA)n Simple_repeat Simple_repeat 1 37 0 366 194 0 0 chr13 24903421 24903493 -94841405 - AluSp/q SINE Alu 0 303 232 315 83 0 0 chr13 24903498 24903546 -94841352 - AluY SINE Alu 0 302 255 1702 67 0 5 chr13 24903546 24903755 -94841143 - AluY SINE Alu -103 208 1 1810 125 0 0 chr13 24903755 24903994 -94840904 - AluSx SINE Alu -72 240 1 361 239 110 31 chr13 24903996 24904159 -94840739 - L1MEc LINE L1 -5105 1291 1116 2228 293 74 22 chr13 24904175 24904236 -94840662 - L1MEc LINE L1 -5380 1016 960 14954 130 42 26 chr13 24904236 24906169 -94838729 + Tigger1 DNA MER2_type 1 1902 -516 2424 77 3 7 chr13 24906169 24906468 -94838430 - AluSx SINE Alu -12 300 3 14954 130 42 26 chr13 24906468 24906793 -94838105 + Tigger1 DNA MER2_type 1902 2301 -117 1536 165 16 0 chr13 24906793 24907041 -94837857 - AluJo SINE Alu -17 295 44 14954 130 42 26 chr13 24907041 24907161 -94837737 + Tigger1 DNA MER2_type 2301 2418 0 2228 293 74 22 chr13 24907161 24908031 -94836867 - L1MEc LINE L1 -5436 960 37 2474 68 0 13 chr13 24908711 24909018 -94835880 - AluSg1 SINE Alu -6 303 1 886 173 32 16 chr13 24909212 24909397 -94835501 - MER53 DNA DNA 0 189 2 390 129 0 0 chr13 24910510 24910572 -94834326 + (T)n Simple_repeat Simple_repeat 1 62 0 234 225 0 56 chr13 24911275 24911346 -94833552 + MIR3 SINE MIR 95 161 -47 187 314 14 14 chr13 24911681 24911751 -94833147 + L2 LINE L2 3184 3253 -19 379 303 73 6 chr13 24911822 24911987 -94832911 - MIR SINE MIR -71 191 16 259 257 46 46 chr13 24912090 24912199 -94832699 + MLT1L LTR MaLR 495 603 -12 247 286 18 0 chr13 24913426 24913482 -94831416 - L2 LINE L2 -18 3254 3198 308 224 153 10 chr13 24914047 24914145 -94830753 - MER5A DNA MER1_type -59 130 19 335 289 91 25 chr13 24914269 24914390 -94830508 + MIR3 SINE MIR 41 169 -39 576 256 58 0 chr13 24914468 24914627 -94830271 + FLAM_A SINE Alu 4 169 0 7642 205 28 23 chr13 24914629 24916758 -94828140 + L1M1 LINE L1 3071 5211 -2354 958 179 0 0 chr13 24916762 24916930 -94827968 + L1M1 LINE L1 5533 5700 -1865 * 4305 190 3 23 chr13 24916903 24917759 -94827139 + L1P LINE L1 4707 5545 -2020 266 286 59 59 chr13 24918073 24918192 -94826706 - MER5A DNA MER1_type -50 139 21 339 316 76 13 chr13 24918296 24918454 -94826444 + MIR3 SINE MIR 34 201 -7 402 224 147 39 chr13 24918706 24918862 -94826036 + MER5B DNA MER1_type 6 178 0 281 296 96 30 chr13 24919085 24919220 -94825678 + MIR SINE MIR 63 206 -56 3080 224 73 24 chr13 24919289 24920751 -94824147 + L1ME1 LINE L1 5967 7582 -3 695 342 121 35 chr13 24920753 24921770 -94823128 - L2 LINE L2 -13 3259 2148 6279 233 21 17 chr13 24921833 24924283 -94820615 + L1MA5A LINE L1 4 2615 -4174 * 8600 129 21 21 chr13 24924282 24925914 -94818984 + L1MA5A LINE L1 4505 6139 -800 1898 129 30 0 chr13 24925914 24926185 -94818713 + AluSx SINE Alu 1 279 -33 8600 129 21 21 chr13 24926185 24926981 -94817917 + L1MA5A LINE L1 6139 6934 -5 414 337 143 19 chr13 24927002 24927616 -94817282 - L2 LINE L2 -1239 2075 1386 229 73 49 0 chr13 24927766 24927807 -94817091 + AluSx SINE Alu 260 302 0 236 387 93 17 chr13 24927812 24928114 -94816784 - L2 LINE L2 -2671 643 319 617 288 80 74 chr13 24928777 24929142 -94815756 + L2 LINE L2 2897 3263 -9 320 93 0 19 chr13 24929144 24929198 -94815700 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 209 303 45 34 chr13 24929230 24929319 -94815579 + MIR SINE MIR 13 102 -160 2078 139 7 0 chr13 24929756 24930057 -94814841 - AluSx SINE Alu -9 303 1 1535 236 111 39 chr13 24930612 24931079 -94813819 + MLT1D LTR MaLR 1 501 -4 465 305 15 8 chr13 24931299 24931430 -94813468 - MIR SINE MIR -50 212 81 640 252 138 24 chr13 24931543 24931668 -94813230 + MIR SINE MIR 13 122 -140 201 39 0 0 chr13 24931668 24931694 -94813204 + (TGG)n Simple_repeat Simple_repeat 1 26 0 640 252 138 24 chr13 24931694 24931778 -94813120 + MIR SINE MIR 122 246 -16 237 303 0 0 chr13 24932665 24932731 -94812167 + T-rich Low_complexity Low_complexity 4 69 0 1550 221 65 3 chr13 24933285 24933841 -94811057 + L1MA10 LINE L1 5035 5609 -703 16215 161 24 54 chr13 24933847 24938169 -94806729 + L1MA3 LINE L1 11 3954 -3770 183 80 0 0 chr13 24938169 24938194 -94806704 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 16215 161 24 54 chr13 24938194 24941856 -94803042 + L1MA3 LINE L1 3954 7724 0 3404 166 16 55 chr13 24941856 24942620 -94802278 + L1MA10 LINE L1 5594 6332 -2 417 239 66 80 chr13 24942930 24943143 -94801755 + MER63A DNA MER1_type 1 210 0 247 298 97 0 chr13 24944365 24944489 -94800409 - MIR SINE MIR -19 243 108 189 107 0 0 chr13 24944553 24944581 -94800317 + (TG)n Simple_repeat Simple_repeat 1 28 0 304 355 43 7 chr13 24944589 24944727 -94800171 + L2 LINE L2 3129 3271 -1 393 224 66 0 chr13 24946605 24946757 -94798141 + (TA)n Simple_repeat Simple_repeat 2 163 0 2078 96 0 84 chr13 24947306 24947639 -94797259 - AluSg SINE Alu -5 305 1 663 347 89 44 chr13 24947712 24948285 -94796613 + L1M4 LINE L1 3390 3988 -2158 313 240 156 19 chr13 24948569 24948723 -94796175 + L1ME4a LINE L1 5933 6107 -14 2252 95 0 7 chr13 24949407 24949701 -94795197 - AluSx SINE Alu -20 292 1 467 247 7 91 chr13 24950409 24950563 -94794335 + MIR SINE MIR 1 141 -121 469 301 146 69 chr13 24950611 24951170 -94793728 + L2 LINE L2 2711 3312 -1 290 162 103 15 chr13 24951536 24951604 -94793294 + L1ME4a LINE L1 5574 5647 -474 373 315 103 14 chr13 24951612 24951825 -94793073 + L1ME4a LINE L1 5684 5915 -206 274 282 74 13 chr13 24951845 24951994 -94792904 + L1ME4a LINE L1 5964 6121 0 940 289 44 22 chr13 24952118 24952482 -94792416 + L1MC4a LINE L1 5512 5883 -1925 246 205 48 84 chr13 24954002 24954085 -94790813 + L2 LINE L2 3137 3216 -56 232 200 0 0 chr13 24954932 24954977 -94789921 - MER117 DNA MER1_type -152 45 1 265 360 0 0 chr13 24956570 24956659 -94788239 + L2 LINE L2 2658 2746 -568 1070 104 0 0 chr13 25056665 25056800 -94688098 + AluSg/x SINE Alu 156 290 -22 1896 134 0 24 chr13 25056825 25057115 -94687783 + AluSx SINE Alu 26 308 -4 463 278 203 41 chr13 25058856 25059094 -94685804 + L1ME4a LINE L1 5577 5775 -346 1940 119 59 7 chr13 25059094 25059380 -94685518 + AluSg SINE Alu 1 301 -9 463 278 203 41 chr13 25059380 25059613 -94685285 + L1ME4a LINE L1 5775 6117 -4 475 307 121 59 chr13 25059666 25060037 -94684861 + L3 LINE CR1 877 1270 -307 490 286 14 21 chr13 25060358 25060498 -94684400 - L2 LINE L2 0 3313 3175 502 222 24 16 chr13 25060501 25060627 -94684271 - MIR SINE MIR -46 216 90 695 269 82 26 chr13 25061498 25061766 -94683132 - L2 LINE L2 -4 3309 3027 373 230 87 24 chr13 25061804 25061930 -94682968 + MIR SINE MIR 61 194 -68 1646 108 0 5 chr13 25061995 25062209 -94682689 + AluSq SINE Alu 1 213 -100 382 94 166 1 chr13 25062213 25062300 -94682598 + L1MC2 LINE L1 6241 6343 -1 2110 148 0 0 chr13 25062337 25062647 -94682251 - AluSx SINE Alu -2 310 1 1402 92 0 0 chr13 25063469 25063642 -94681256 - AluSq SINE Alu -118 195 23 397 286 101 51 chr13 25063756 25063934 -94680964 - HAL1 LINE L1 -2286 221 35 313 250 0 34 chr13 25063934 25064022 -94680876 - LTR39 LTR ERV1 0 783 699 1160 203 18 31 chr13 25064085 25064371 -94680527 - LTR39 LTR ERV1 -501 282 1 637 76 0 0 chr13 25064387 25064466 -94680432 + AluS SINE Alu 2 80 -233 367 290 129 8 chr13 25064854 25064978 -94679920 + MIR SINE MIR 119 257 -5 248 347 60 40 chr13 25065472 25065671 -94679227 + L3 LINE CR1 64 266 -1311 202 350 52 0 chr13 25065804 25065901 -94678997 - MIR SINE MIR 0 262 161 428 271 0 8 chr13 25066468 25066586 -94678312 - LTR33 LTR ERVL -11 510 394 290 243 0 14 chr13 25066813 25066887 -94678011 - LTR33 LTR ERVL -448 73 1 2067 123 45 0 chr13 25067053 25067345 -94677553 + AluSx SINE Alu 1 305 -7 180 111 0 0 chr13 25067354 25067381 -94677517 + (A)n Simple_repeat Simple_repeat 1 27 0 443 244 36 48 chr13 25067381 25067549 -94677349 + Charlie8 DNA MER1_type 2 167 -2250 403 295 122 58 chr13 25067992 25068031 -94676867 + L2 LINE L2 2730 2765 -507 973 207 31 45 chr13 25068031 25068253 -94676645 + MER20 DNA MER1_type 1 219 0 403 295 122 58 chr13 25068253 25068665 -94676233 + L2 LINE L2 2765 3223 -49 235 362 80 55 chr13 25069972 25070171 -94674727 - MIR3 SINE MIR -3 205 2 520 278 112 18 chr13 25070209 25070445 -94674453 + MIR SINE MIR 9 255 -7 1051 166 8 81 chr13 25070695 25070771 -94674127 + L1MA3 LINE L1 6066 6146 -159 1849 191 3 0 chr13 25070771 25071075 -94673823 + AluJb SINE Alu 1 305 -7 1051 166 8 81 chr13 25071075 25071257 -94673641 + L1MA3 LINE L1 6146 6305 0 1036 291 121 14 chr13 25071266 25071695 -94673203 - L2 LINE L2 -342 2972 2498 2039 165 39 31 chr13 25071697 25072242 -94672656 + MLT2A2 LTR ERVL 1 554 0 441 287 99 22 chr13 25072246 25072427 -94672471 - L2 LINE L2 -818 2496 2302 1909 160 7 114 chr13 25072427 25072883 -94672015 + MLT2D LTR ERVL 8 414 0 972 219 79 4 chr13 25072953 25073218 -94671680 - MER33 DNA MER1_type -39 285 1 664 274 148 56 chr13 25073220 25073673 -94671225 - L2 LINE L2 -1094 2220 1695 2232 110 3 13 chr13 25073673 25073974 -94670924 - AluSx SINE Alu -13 299 2 664 274 148 56 chr13 25073974 25074129 -94670769 - L2 LINE L2 -1619 1695 1556 521 273 11 23 chr13 25074279 25074455 -94670443 + MER5B DNA MER1_type 2 175 -3 192 121 0 190 chr13 25074892 25074950 -94669948 - L2 LINE L2 0 3313 3267 262 260 135 31 chr13 25075246 25075342 -94669556 - L2 LINE L2 -30 3242 3137 21 0 0 0 chr13 25077341 25077362 -94667536 + AT_rich Low_complexity Low_complexity 1 21 0 2471 84 3 0 chr13 25079152 25079462 -94665436 - AluY SINE Alu 0 311 1 1895 180 103 5 chr13 25079878 25080256 -94664642 - Tigger7 DNA MER2_type -2065 422 8 543 168 0 0 chr13 25080353 25080448 -94664450 - AluSg/x SINE Alu -2 308 214 294 192 0 0 chr13 25080475 25080527 -94664371 + HERVK LTR ERVK 439 490 -6753 854 170 18 47 chr13 25080530 25080701 -94664197 + LTR5 LTR ERVK 804 969 0 1218 195 46 8 chr13 25080701 25080963 -94663935 + HERVK LTR ERVK 1 272 -6971 1187 157 0 0 chr13 25080945 25081143 -94663755 + HERVK LTR ERVK 423 620 -6623 * 2192 141 0 25 chr13 25081474 25081794 -94663104 + AluSx SINE Alu 1 312 0 1057 241 124 37 chr13 25081883 25082085 -94662813 + MLT1C LTR MaLR 1 184 -283 1901 161 0 0 chr13 25082085 25082370 -94662528 + AluJb SINE Alu 1 285 -27 1057 241 124 37 chr13 25082370 25082595 -94662303 + MLT1C LTR MaLR 184 465 -2 1740 126 0 4 chr13 25083552 25083798 -94661100 - AluSx SINE Alu -8 304 60 1706 94 76 10 chr13 25083798 25084124 -94660774 + LTR7 LTR ERV1 1 408 -42 465 94 0 0 chr13 25084136 25084200 -94660698 - AluJ/FLAM SINE Alu -247 65 2 447 355 6 6 chr13 25085168 25085334 -94659564 + MIR3 SINE MIR 37 202 -6 2129 113 3 7 chr13 25085513 25085806 -94659092 + AluSx SINE Alu 1 292 -20 205 304 98 54 chr13 25087729 25087841 -94657057 + MIR SINE MIR 53 169 -93 2031 137 0 0 chr13 25090330 25090614 -94654284 + AluSx SINE Alu 11 294 -18 238 185 0 92 chr13 25091128 25091193 -94653705 + MST-int LTR MaLR 673 731 -920 346 155 31 210 chr13 25091280 25091571 -94653327 - L1MC4 LINE L1 0 8042 7804 639 240 91 68 chr13 25091964 25092303 -94652595 - MLT1G LTR MaLR -242 348 1 192 319 37 111 chr13 25092334 25092469 -94652429 + L2 LINE L2 3123 3247 -25 2331 107 10 0 chr13 25092489 25092798 -94652100 + AluSx SINE Alu 1 312 0 1321 227 40 73 chr13 25092987 25093467 -94651431 + MER101 LTR ERV1 11 474 0 2042 128 0 20 chr13 25094522 25094828 -94650070 + AluSx SINE Alu 1 300 -12 2642 37 0 0 chr13 25095093 25095388 -94649510 + AluY SINE Alu 1 295 -16 1601 197 0 3 chr13 25095402 25095697 -94649201 + AluJo SINE Alu 4 297 -15 1464 189 94 31 chr13 25095757 25095952 -94648946 - MER2 DNA MER2_type 0 345 121 2022 122 6 45 chr13 25095952 25096264 -94648634 - AluSx SINE Alu -12 300 1 1464 189 94 31 chr13 25096264 25096386 -94648512 - MER2 DNA MER2_type -224 121 8 2012 158 28 50 chr13 25096510 25096909 -94647989 - MLT1B LTR MaLR 0 390 1 311 0 26 0 chr13 25097086 25097125 -94647773 + (CA)n Simple_repeat Simple_repeat 2 41 0 1815 146 43 67 chr13 25097420 25097811 -94647087 + MLT1B LTR MaLR 9 390 0 387 348 42 70 chr13 25098312 25098671 -94646227 + L2 LINE L2 2906 3254 -18 209 237 0 0 chr13 25099758 25099796 -94645102 + L2 LINE L2 3215 3252 -20 296 260 207 12 chr13 25100248 25100417 -94644481 - MIR SINE MIR -12 250 49 220 238 53 19 chr13 25100485 25100592 -94644306 + MIR SINE MIR 83 202 -6 2067 218 98 33 chr13 25101630 25102232 -94642666 - LTR48B LTR ERV1 0 644 4 2546 53 7 3 chr13 25102255 25102555 -94642343 - AluY SINE Alu -10 301 1 1499 213 145 43 chr13 25103176 25103604 -94641294 + MLT2B1 LTR ERVL 3 386 -134 1951 160 71 0 chr13 25103604 25103929 -94640969 + MER7A DNA MER2_type 1 346 0 384 22 0 0 chr13 25103929 25103974 -94640924 + (TA)n Simple_repeat Simple_repeat 1 45 0 1499 213 145 43 chr13 25103974 25104014 -94640884 + MLT2B1 LTR ERVL 385 520 0 25 0 0 0 chr13 25104060 25104085 -94640813 + AT_rich Low_complexity Low_complexity 1 25 0 204 40 0 0 chr13 25104291 25104316 -94640582 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 25104925 25104946 -94639952 + AT_rich Low_complexity Low_complexity 1 21 0 975 169 0 0 chr13 25105529 25105683 -94639215 + FRAM SINE Alu 5 158 -8 2090 117 10 10 chr13 25106157 25106291 -94638607 + AluJb SINE Alu 1 134 -178 2204 110 7 3 chr13 25106291 25106582 -94638316 + AluSq SINE Alu 1 292 -21 2090 117 10 10 chr13 25106582 25106746 -94638152 + AluJb SINE Alu 133 299 -13 186 118 0 0 chr13 25106821 25106855 -94638043 + (TG)n Simple_repeat Simple_repeat 1 34 0 479 312 32 0 chr13 25106960 25107114 -94637784 + MIR SINE MIR 14 172 -90 322 272 126 0 chr13 25107830 25107933 -94636965 + MIR SINE MIR 66 181 -81 2132 125 32 35 chr13 25108225 25108269 -94636629 - L1MB2 LINE L1 -7 6164 6121 219 36 0 0 chr13 25108269 25108297 -94636601 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2415 61 0 0 chr13 25108297 25108577 -94636321 - AluY SINE Alu -31 280 1 2132 125 32 35 chr13 25108577 25108907 -94635991 - L1MB2 LINE L1 -48 6123 5790 666 133 71 0 chr13 25109095 25109208 -94635690 - L1MB2 LINE L1 -384 5799 5679 353 276 18 29 chr13 25111959 25112129 -94632769 + L1ME4a LINE L1 5954 6121 0 879 216 22 35 chr13 25112325 25112557 -94632341 + MIR SINE MIR 33 261 -1 890 132 0 22 chr13 25112661 25112797 -94632101 - FLAM_C SINE Alu 0 133 1 1552 205 10 3 chr13 25116630 25116918 -94627980 - AluJo SINE Alu -22 290 1 216 209 0 0 chr13 25117391 25117434 -94627464 + A-rich Low_complexity Low_complexity 2 44 0 2136 103 0 31 chr13 25117434 25117753 -94627145 + AluSx SINE Alu 1 309 -3 237 229 43 29 chr13 25117764 25117834 -94627064 - Charlie8 DNA MER1_type -2343 74 4 306 0 0 0 chr13 25118408 25118442 -94626456 + (CA)n Simple_repeat Simple_repeat 2 35 0 191 336 80 24 chr13 25118516 25118641 -94626257 + L2 LINE L2 2926 3057 -256 2251 123 0 0 chr13 25119985 25120294 -94624604 - AluSc SINE Alu 0 309 1 232 250 17 0 chr13 25120626 25120686 -94624212 + MIR SINE MIR 81 141 -121 184 268 18 0 chr13 25121510 25121566 -94623332 - MIR SINE MIR -61 147 91 2113 128 131 11 chr13 25121951 25122333 -94622565 + MSTA LTR MaLR 1 428 0 339 266 187 48 chr13 25122469 25122758 -94622140 - L2 LINE L2 -4 3268 2940 226 247 221 19 chr13 25123184 25123338 -94621560 + MIR SINE MIR 78 262 0 477 205 98 71 chr13 25124455 25124550 -94620348 + L1MC4 LINE L1 7813 7904 -138 2357 64 3 10 chr13 25124550 25124847 -94620051 + AluY SINE Alu 1 295 -16 477 205 98 71 chr13 25124847 25124975 -94619923 + L1MC4 LINE L1 7904 8042 0 211 74 0 0 chr13 25124998 25125025 -94619873 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 397 62 31 15 chr13 25125025 25125090 -94619808 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1622 116 0 4 chr13 25125190 25125422 -94619476 + AluY SINE Alu 66 296 -15 341 228 132 0 chr13 25125436 25125550 -94619348 + L1MC4 LINE L1 7914 8042 0 211 74 0 0 chr13 25125573 25125600 -94619298 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 703 66 19 9 chr13 25125600 25125706 -94619192 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 1759 185 6 13 chr13 25125707 25126021 -94618877 - AluJo SINE Alu 0 312 1 3327 153 35 56 chr13 25126167 25126848 -94618050 - L1MC2 LINE L1 -377 5967 5301 521 281 63 74 chr13 25126961 25127423 -94617475 + MLT1J LTR MaLR 25 481 -30 197 369 29 39 chr13 25127610 25127713 -94617185 - L2 LINE L2 -33 3280 3179 242 175 79 0 chr13 25128520 25128583 -94616315 + CT-rich Low_complexity Low_complexity 4 71 0 21 71 0 0 chr13 25129233 25129275 -94615623 + GC_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr13 25129334 25129360 -94615538 + GC_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr13 25129529 25129560 -94615338 + GC_rich Low_complexity Low_complexity 1 31 0 2554 70 0 3 chr13 25131396 25131710 -94613188 - AluSq SINE Alu 0 313 1 235 343 111 0 chr13 25132101 25132200 -94612698 - L2 LINE L2 -12 3260 3151 239 327 136 32 chr13 25132638 25132889 -94612009 - L2 LINE L2 -414 2900 2624 1809 196 159 25 chr13 25133205 25133714 -94611184 + MER119 DNA MER1_type 7 583 0 223 338 31 12 chr13 25133742 25133902 -94610996 - L2 LINE L2 -1108 2206 2044 312 139 14 14 chr13 25134605 25134677 -94610221 + C-rich Low_complexity Low_complexity 1 72 0 254 0 83 0 chr13 25134691 25134727 -94610171 + T-rich Low_complexity Low_complexity 3 41 0 717 120 0 0 chr13 25135025 25135125 -94609773 - FLAM_C SINE Alu -12 131 32 1949 118 37 0 chr13 25135180 25135451 -94609447 + AluSx SINE Alu 2 282 -30 26 30 0 0 chr13 25135587 25135620 -94609278 + AT_rich Low_complexity Low_complexity 1 33 0 267 317 49 8 chr13 25135881 25136004 -94608894 - L2 LINE L2 -6 3307 3180 186 196 0 87 chr13 25136504 25136550 -94608348 + L2 LINE L2 3267 3308 -5 249 161 0 71 chr13 25136812 25136868 -94608030 - AluJo SINE Alu -165 137 86 * 259 167 21 0 chr13 25136837 25136885 -94608013 - Alu SINE Alu -20 282 234 614 167 0 0 chr13 25136888 25136996 -94607902 + AluSg/x SINE Alu 195 302 -7 352 268 180 10 chr13 25138456 25138650 -94606248 - MLT1J2 LTR MaLR -223 227 1 193 250 87 65 chr13 25138831 25138923 -94605975 + MER5C DNA MER1_type 1 94 -230 781 248 40 49 chr13 25139191 25139417 -94605481 + MER58A DNA MER1_type 1 224 0 29 0 0 0 chr13 25139489 25139518 -94605380 + AT_rich Low_complexity Low_complexity 1 29 0 210 258 0 0 chr13 25139569 25139631 -94605267 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 782 249 130 38 chr13 25139631 25140066 -94604832 - L2 LINE L2 -208 3105 2639 863 273 131 28 chr13 25141000 25141755 -94603143 + L1M4 LINE L1 2576 3408 -2738 * 1848 249 125 28 chr13 25141754 25141797 -94603101 - L1MC4a LINE L1 -1541 6267 6230 2268 90 0 7 chr13 25141797 25142096 -94602802 + AluSq SINE Alu 1 297 -16 1848 249 125 28 chr13 25142096 25142973 -94601925 - L1MC4a LINE L1 -1578 6230 5258 878 315 74 47 chr13 25143129 25144371 -94600527 - L1MC4a LINE L1 -1088 5058 3757 2044 106 47 0 chr13 25144371 25144646 -94600252 - AluSx SINE Alu -24 288 1 878 315 74 47 chr13 25144646 25145080 -94599818 - L1MC4a LINE L1 -2389 3757 3336 329 132 29 0 chr13 25145156 25145224 -94599674 - L1MB3 LINE L1 -1 6182 6113 435 76 0 0 chr13 25145229 25145295 -94599603 - L1 LINE L1 -966 5180 5115 617 62 0 0 chr13 25145668 25145748 -94599150 - AluS SINE Alu -233 80 1 233 298 53 7 chr13 25145748 25145899 -94598999 - L1P LINE L1 -2355 3791 3634 241 242 0 0 chr13 25146112 25146174 -94598724 - L1P LINE L1 -2741 3405 3344 372 103 29 0 chr13 25146257 25146325 -94598573 - L1MB3 LINE L1 -1 6182 6113 439 75 0 0 chr13 25146330 25146397 -94598501 - L1 LINE L1 -966 5180 5114 797 210 205 11 chr13 25146604 25146957 -94597941 - L1ME3A LINE L1 -24 6140 5724 490 332 34 12 chr13 25147366 25147644 -94597254 - L1MEc LINE L1 -3824 2398 2148 2350 84 0 0 chr13 25147733 25148031 -94596867 - AluY SINE Alu -13 298 1 312 263 111 47 chr13 25148145 25148335 -94596563 - HAL1b LINE L1 -501 847 646 482 213 142 0 chr13 25148354 25148481 -94596417 + MER105 DNA DNA 56 200 -4 621 293 47 89 chr13 25148492 25149201 -94595697 - HAL1b LINE L1 -744 1531 53 203 196 22 0 chr13 25149212 25149258 -94595640 + T-rich Low_complexity Low_complexity 3 49 0 317 308 58 0 chr13 25149324 25149444 -94595454 - MER5B DNA MER1_type -32 146 20 489 250 16 0 chr13 25149630 25149754 -94595144 - L1MD2 LINE L1 -18 6341 6216 858 176 72 21 chr13 25150627 25150820 -94594078 - L1MD2 LINE L1 -135 6224 6022 1002 204 43 88 chr13 25150820 25151218 -94593680 - L1M4 LINE L1 -1817 4329 3950 2094 184 76 4 chr13 25151231 25151703 -94593195 - MER73 LTR ERVL -12 632 127 434 151 143 8 chr13 25151755 25151881 -94593017 - L1M4 LINE L1 -2197 3949 3807 1448 174 8 11 chr13 25151883 25152147 -94592751 - AluJo SINE Alu 0 312 50 24 53 0 0 chr13 25152220 25152258 -94592640 + AT_rich Low_complexity Low_complexity 1 38 0 1496 99 12 62 chr13 25152789 25153031 -94591867 - MER30 DNA MER1_type 0 230 1 2456 83 3 3 chr13 25153507 25153819 -94591079 - AluSp SINE Alu 0 313 2 1818 185 3 7 chr13 25153824 25154127 -94590771 - AluJb SINE Alu -10 302 1 594 265 38 52 chr13 25155156 25155289 -94589609 + MIR SINE MIR 16 146 -116 2185 124 3 7 chr13 25155289 25155596 -94589302 + AluSx SINE Alu 1 306 -6 594 265 38 52 chr13 25155596 25155673 -94589225 + MIR SINE MIR 146 223 -39 250 255 202 11 chr13 25158455 25158549 -94586349 + L2 LINE L2 3151 3262 -10 387 309 75 15 chr13 25159154 25159543 -94585355 - L1M4 LINE L1 -1113 5033 4622 217 255 20 0 chr13 25159615 25159666 -94585232 + MIR SINE MIR 38 89 -119 1447 163 0 4 chr13 25159801 25160028 -94584870 + AluJb SINE Alu 86 311 -1 376 258 26 26 chr13 25161546 25161697 -94583201 - L1MD2 LINE L1 -2251 5557 5407 1893 158 21 0 chr13 25161699 25161990 -94582908 - AluJb SINE Alu -15 297 1 1978 254 106 40 chr13 25163605 25164743 -94580155 - L2 LINE L2 -1 3312 2102 1128 201 51 56 chr13 25165251 25165624 -94579274 - MLT1A2 LTR MaLR 0 374 4 427 275 77 34 chr13 25166447 25166654 -94578244 + L2 LINE L2 3098 3313 0 324 289 62 31 chr13 25166677 25166902 -94577996 - L1ME4a LINE L1 -238 5883 5652 21 36 0 0 chr13 25166994 25167022 -94577876 + AT_rich Low_complexity Low_complexity 1 28 0 246 312 65 39 chr13 25167206 25167360 -94577538 + L2 LINE L2 2326 2483 -831 204 357 31 10 chr13 25167962 25168060 -94576838 + L2 LINE L2 3173 3272 0 247 281 184 0 chr13 25168112 25168226 -94576672 - L1MCc LINE L1 -4638 2484 2350 * 3636 214 59 24 chr13 25168218 25169265 -94575633 - L1MD2 LINE L1 -2 6357 5274 728 264 107 63 chr13 25169276 25170024 -94574874 - L1MCc LINE L1 -4778 2344 1630 2051 130 10 7 chr13 25170024 25170331 -94574567 - AluSx SINE Alu -4 308 1 234 0 0 0 chr13 25170341 25170367 -94574531 + (TTG)n Simple_repeat Simple_repeat 2 27 0 728 264 107 63 chr13 25170367 25170381 -94574517 - L1MCc LINE L1 -5500 1622 1610 7256 26 25 0 chr13 25170381 25171353 -94573545 - L1PA4 LINE L1 -3 6152 5158 728 264 107 63 chr13 25171353 25171527 -94573371 - L1MCc LINE L1 -5512 1610 1129 1952 125 32 0 chr13 25171779 25172058 -94572840 - AluSx SINE Alu -24 288 1 1356 118 5 5 chr13 25172068 25172271 -94572627 - AluSg/x SINE Alu 0 312 110 505 284 16 37 chr13 25172365 25172608 -94572290 - L1MCc LINE L1 -5972 451 214 898 236 26 15 chr13 25173152 25173347 -94571551 + MIR SINE MIR 12 208 -54 285 342 51 8 chr13 25174971 25175120 -94569778 - MIR3 SINE MIR -67 141 3 703 163 16 31 chr13 25176442 25176571 -94568327 + FLAM_C SINE Alu 1 127 -16 278 231 82 82 chr13 25177014 25177161 -94567737 + MIR SINE MIR 66 212 -50 233 273 18 0 chr13 25178429 25178484 -94566414 - L2 LINE L2 -9 3304 3249 1717 181 6 22 chr13 25179189 25179218 -94565680 - AluJb SINE Alu -2 310 282 408 20 0 0 chr13 25179218 25179267 -94565631 + (TG)n Simple_repeat Simple_repeat 1 49 0 1717 181 6 22 chr13 25179267 25179552 -94565346 - AluJb SINE Alu -30 282 1 1481 129 63 94 chr13 25179723 25180073 -94564825 + MER44D DNA MER2_type 1 609 0 1403 189 120 53 chr13 25180179 25180524 -94564374 - LTR54B LTR ERV1 -1 497 114 1820 175 0 13 chr13 25180524 25180832 -94564066 - AluJb SINE Alu -8 304 1 1403 189 120 53 chr13 25180832 25180936 -94563962 - LTR54B LTR ERV1 -384 114 18 180 261 99 27 chr13 25181357 25181468 -94563430 + L2 LINE L2 3113 3231 -82 693 209 61 10 chr13 25182805 25183001 -94561897 - MER3 DNA MER1_type -2 207 2 745 149 15 30 chr13 25183933 25184067 -94560831 - FLAM_C SINE Alu 0 133 2 265 282 208 7 chr13 25184094 25184243 -94560655 + MIR SINE MIR 58 236 -26 253 367 66 53 chr13 25184934 25185160 -94559738 + L2 LINE L2 3044 3272 0 47 44 0 0 chr13 25186036 25186104 -94558794 + AT_rich Low_complexity Low_complexity 1 68 0 2130 104 3 17 chr13 25186384 25186682 -94558216 + AluY SINE Alu 1 294 -17 208 204 114 0 chr13 25186849 25186893 -94558005 + MIR SINE MIR 94 142 -66 701 229 64 4 chr13 25187212 25187448 -94557450 + L1M4 LINE L1 2786 3035 -3111 2241 109 0 13 chr13 25188190 25188503 -94556395 - AluSc SINE Alu 0 309 1 458 184 0 18 chr13 25188513 25188525 -94556373 - L1MA10 LINE L1 -2 6332 6321 3464 206 54 12 chr13 25188525 25189422 -94555476 - L1ME1 LINE L1 -5 6161 5229 759 216 83 10 chr13 25190413 25190617 -94554281 + MIR SINE MIR 13 231 -31 1826 136 38 35 chr13 25190625 25190992 -94553906 + THE1C LTR MaLR 6 373 -2 387 245 81 14 chr13 25191539 25191701 -94553197 - L1ME LINE L1 -396 5766 5587 23 0 0 0 chr13 25193297 25193320 -94551578 + AT_rich Low_complexity Low_complexity 1 23 0 207 384 81 0 chr13 25194080 25194166 -94550732 + L2 LINE L2 3102 3194 -78 508 249 40 90 chr13 25194292 25194493 -94550405 - MIR3 SINE MIR -15 193 3 1187 123 0 0 chr13 25195522 25195684 -94549214 + AluSg/x SINE Alu 132 293 -17 2617 250 91 53 chr13 25195787 25198119 -94546779 + L1MCc LINE L1 17 2258 -4683 2735 141 16 87 chr13 25198119 25198673 -94546225 - MLT2B2 LTR ERVL 0 515 1 2617 250 91 53 chr13 25198673 25198921 -94545977 + L1MCc LINE L1 2258 2495 -4446 2772 121 19 23 chr13 25198921 25199408 -94545490 - MER31A LTR ERV1 0 485 1 2617 250 91 53 chr13 25199408 25199837 -94545061 + L1MCc LINE L1 2495 3355 -3586 28 0 0 0 chr13 25200116 25200144 -94544754 + AT_rich Low_complexity Low_complexity 1 28 0 202 211 0 0 chr13 25200621 25200659 -94544239 + (TATG)n Simple_repeat Simple_repeat 4 41 0 1067 31 0 0 chr13 25200666 25200796 -94544102 + L1PA2 LINE L1 6026 6155 0 189 0 0 0 chr13 25200804 25200825 -94544073 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 445 316 72 35 chr13 25202187 25202729 -94542169 - HERV16 LTR ERVL -1494 3502 3158 36 23 0 0 chr13 25202872 25202915 -94541983 + AT_rich Low_complexity Low_complexity 1 43 0 36619 81 6 11 chr13 25203057 25206093 -94538805 - L1PA6 LINE L1 -1 6153 3103 2392 91 0 3 chr13 25206093 25206400 -94538498 - AluSp SINE Alu -7 306 1 36619 81 6 11 chr13 25206400 25209544 -94535354 - L1PA6 LINE L1 -3051 3103 11 705 342 47 2 chr13 25209569 25209978 -94534920 - HERV16 LTR ERVL -2564 3200 2774 282 314 58 35 chr13 25210797 25211023 -94533875 - LTR16B LTR ERVL -17 447 217 1468 151 177 57 chr13 25211641 25212026 -94532872 + MSTB1 LTR MaLR 2 432 0 206 280 96 56 chr13 25212313 25212438 -94532460 - L2 LINE L2 -7 3265 3136 1764 184 33 29 chr13 25212593 25213045 -94531853 - MER74A LTR ERVL -30 528 75 677 150 92 0 chr13 25213035 25213155 -94531743 - MSTB LTR MaLR -294 132 2 * 2161 114 7 16 chr13 25213295 25213602 -94531296 - AluSx SINE Alu -7 305 2 910 257 139 43 chr13 25213646 25214206 -94530692 - HAL1 LINE L1 -1628 879 266 3075 143 10 0 chr13 25214296 25214785 -94530113 - LOR1a LTR ERV1 -3 494 1 285 233 17 0 chr13 25215689 25215749 -94529149 + L2 LINE L2 3251 3311 -2 1903 208 36 32 chr13 25216771 25217267 -94527631 + MLT1D LTR MaLR 1 498 -7 270 209 70 12 chr13 25217375 25217461 -94527437 - MER5B DNA MER1_type 0 178 88 1645 218 11 6 chr13 25217977 25218340 -94526558 + MLT1A1 LTR MaLR 1 365 0 284 265 5 83 chr13 25218532 25218736 -94526162 + L1MCc LINE L1 1283 1470 -4953 491 243 58 12 chr13 25218737 25218910 -94525988 + L1MCa LINE L1 539 719 -6222 22 0 0 0 chr13 25218942 25218964 -94525934 + AT_rich Low_complexity Low_complexity 1 22 0 244 227 72 0 chr13 25220859 25220956 -94523942 - L1ME LINE L1 -284 5837 5734 272 315 30 39 chr13 25222078 25222310 -94522588 + L1MCa LINE L1 1238 1467 -4956 * 3373 221 88 80 chr13 25222294 25222697 -94522201 + L1MCa LINE L1 6 404 -5920 1903 109 44 4 chr13 25222697 25222972 -94521926 + AluSg1 SINE Alu 3 288 -21 3373 221 88 80 chr13 25222972 25223977 -94520921 + L1MCa LINE L1 404 1489 -4835 1339 201 23 0 chr13 25223977 25224241 -94520657 + AluSx SINE Alu 42 311 -1 1518 252 139 22 chr13 25224253 25225788 -94519110 + L1MCa LINE L1 1595 3330 -3096 2006 302 158 25 chr13 25225788 25227011 -94517887 + L2 LINE L2 1223 2608 -706 965 276 177 24 chr13 25227071 25227495 -94517403 + L2 LINE L2 2825 3313 0 267 216 11 0 chr13 25227570 25227658 -94517240 + L1ME4a LINE L1 6025 6113 -8 241 203 17 0 chr13 25227713 25227772 -94517126 + L1ME4a LINE L1 6060 6119 -2 373 191 45 0 chr13 25227882 25227971 -94516927 - L1MC4 LINE L1 0 8042 7950 2570 195 57 78 chr13 25228052 25228945 -94515953 - L1MC4 LINE L1 -410 7632 6759 549 225 28 0 chr13 25229106 25229248 -94515650 + PABL_A-int LTR ERV1 4801 4946 -1385 251 152 0 0 chr13 25229274 25229320 -94515578 + PABL_A-int LTR ERV1 3918 3963 -1052 29 0 0 0 chr13 25229657 25229686 -94515212 + AT_rich Low_complexity Low_complexity 1 29 0 726 203 213 102 chr13 25229989 25230491 -94514407 + LTR64 LTR ERVK 1 558 0 21 0 0 0 chr13 25231139 25231160 -94513738 + AT_rich Low_complexity Low_complexity 1 21 0 270 308 17 0 chr13 25231385 25231502 -94513396 - MER103 DNA DNA -45 121 3 2067 287 24 40 chr13 25231788 25232989 -94511909 - L2 LINE L2 -1 3312 2132 243 290 129 46 chr13 25233144 25233579 -94511319 - L2 LINE L2 -1147 2167 1697 339 136 45 0 chr13 25233607 25233673 -94511225 - L1MB3 LINE L1 -7 6176 6108 2041 166 60 5 chr13 25233677 25234075 -94510823 - MSTB1 LTR MaLR -12 420 1 3071 151 45 26 chr13 25234075 25234716 -94510182 - L1MB2 LINE L1 -70 6101 5449 4567 122 14 7 chr13 25235007 25235705 -94509193 + L1PA16 LINE L1 5455 6157 -9 418 294 238 14 chr13 25235803 25236231 -94508667 - L2 LINE L2 -535 2779 2256 266 326 59 38 chr13 25236736 25236880 -94508018 + MIR SINE MIR 23 165 -64 194 208 0 75 chr13 25237178 25237231 -94507667 + L2 LINE L2 3264 3312 -1 201 321 81 42 chr13 25239342 25239515 -94505383 + MIR SINE MIR 16 194 -68 1926 62 117 7 chr13 25239515 25239788 -94505110 + AluSc SINE Alu 1 303 -6 1036 76 0 0 chr13 25242104 25242236 -94502662 - AluSg/x SINE Alu -7 305 174 2265 104 0 17 chr13 25242412 25242711 -94502187 - AluSq SINE Alu -19 294 1 5225 53 20 3 chr13 25242745 25243404 -94501494 + L1PA7 LINE L1 5484 6153 -1 21 0 0 0 chr13 25245555 25245576 -94499322 + AT_rich Low_complexity Low_complexity 1 21 0 190 329 49 12 chr13 25246303 25246385 -94498513 - L2 LINE L2 -54 3218 3134 196 310 0 0 chr13 25246762 25246820 -94498078 - L2 LINE L2 -253 3060 3003 239 272 12 25 chr13 25247091 25247172 -94497726 - L1MC4 LINE L1 -149 7893 7814 326 0 0 0 chr13 25247193 25247228 -94497670 - U2 snRNA snRNA -153 35 1 252 308 104 50 chr13 25247595 25247777 -94497121 - L1MC/D LINE L1 -2082 5726 5535 234 172 62 16 chr13 25247830 25247894 -94497004 - L1MC/D LINE L1 -753 5393 5327 429 20 0 0 chr13 25248371 25248421 -94496477 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 75 0 0 chr13 25248422 25248475 -94496423 + AT_rich Low_complexity Low_complexity 1 53 0 210 37 0 0 chr13 25248544 25248571 -94496327 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr13 25251142 25251170 -94493728 + AT_rich Low_complexity Low_complexity 1 28 0 382 219 133 16 chr13 25251195 25251323 -94493575 - L1ME4a LINE L1 -17 6104 5962 23 0 0 0 chr13 25253900 25253923 -94490975 + AT_rich Low_complexity Low_complexity 1 23 0 314 306 0 0 chr13 25254970 25255055 -94489843 + MER103 DNA DNA 5 89 -77 2062 119 3 17 chr13 25256085 25256387 -94488511 + AluJb SINE Alu 1 298 -14 1586 222 76 58 chr13 25257202 25257770 -94487128 + L1MC4 LINE L1 7465 8042 0 1380 141 0 23 chr13 25257781 25258001 -94486897 + AluJo SINE Alu 85 299 -13 294 260 26 0 chr13 25258175 25258252 -94486646 + MER3 DNA MER1_type 5 83 -126 232 214 14 71 chr13 25258238 25258308 -94486590 - Charlie5 DNA MER1_type -2546 66 1 * 250 230 126 0 chr13 25262735 25262822 -94482076 + L2 LINE L2 3136 3233 -39 204 339 0 0 chr13 25262914 25262976 -94481922 + MIR SINE MIR 184 245 -17 202 275 112 34 chr13 25263170 25263348 -94481550 - L2 LINE L2 -252 3020 2829 192 250 67 0 chr13 25263558 25263618 -94481280 - MIR3 SINE MIR -28 180 117 1567 249 102 85 chr13 25263915 25264844 -94480054 - L1ME LINE L1 -5116 954 10 22 56 0 0 chr13 25264870 25264906 -94479992 + AT_rich Low_complexity Low_complexity 1 36 0 2361 100 7 0 chr13 25265099 25265408 -94479490 + AluSx SINE Alu 1 311 -1 1851 164 0 13 chr13 25266392 25266696 -94478202 + AluJo SINE Alu 1 300 -12 279 0 0 0 chr13 25266697 25266728 -94478170 + (CA)n Simple_repeat Simple_repeat 1 31 0 351 250 17 58 chr13 25267522 25267642 -94477256 + MER5A DNA MER1_type 63 177 -12 1281 97 97 5 chr13 25269482 25269668 -94475230 - AluJo SINE Alu -15 297 95 3633 130 57 0 chr13 25270864 25271439 -94473459 + MER39B LTR ERV1 1 608 -45 532 211 49 8 chr13 25271874 25271997 -94472901 + L1MC4a LINE L1 5523 5650 -471 624 244 185 33 chr13 25271997 25272432 -94472466 + MLT1G1 LTR MaLR 1 595 0 689 231 124 20 chr13 25272433 25272731 -94472167 + L1MC4a LINE L1 5641 5969 -1839 296 208 0 0 chr13 25273033 25273105 -94471793 - MLT2C2 LTR ERVL 0 464 393 1668 201 129 12 chr13 25273149 25273568 -94471330 - MLT2B1 LTR ERVL -50 470 3 485 253 100 3 chr13 25273570 25273717 -94471181 + MIR SINE MIR 15 176 -58 2240 83 14 7 chr13 25273785 25274075 -94470823 - AluSq SINE Alu -21 292 1 209 57 29 0 chr13 25274118 25274153 -94470745 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 542 288 84 14 chr13 25274154 25274584 -94470314 - L1M4 LINE L1 -2868 3278 2819 862 114 16 0 chr13 25274584 25274707 -94470191 - AluSg/x SINE Alu -12 298 174 33 25 0 0 chr13 25274958 25274998 -94469900 + AT_rich Low_complexity Low_complexity 1 40 0 899 281 69 59 chr13 25275247 25276412 -94468486 - L1MEc LINE L1 -2161 4054 2778 2103 125 3 0 chr13 25276552 25276841 -94468057 + AluSx SINE Alu 1 290 -22 636 211 19 115 chr13 25276933 25277046 -94467852 - MIR SINE MIR -13 249 172 2488 39 0 0 chr13 25277046 25277371 -94467527 + AluY SINE Alu 1 325 0 636 211 19 115 chr13 25277371 25277516 -94467382 - MIR SINE MIR -90 172 15 432 271 118 23 chr13 25277568 25277911 -94466987 - L1MEc LINE L1 -3764 2481 2117 23 0 0 0 chr13 25277918 25277941 -94466957 + AT_rich Low_complexity Low_complexity 1 23 0 2089 145 3 0 chr13 25278032 25278328 -94466570 + AluSx SINE Alu 1 297 -15 1229 190 50 75 chr13 25278479 25278863 -94466035 - MLT1A2 LTR MaLR 0 374 1 2184 122 7 0 chr13 25279104 25279400 -94465498 - AluSx SINE Alu -14 298 1 400 246 116 25 chr13 25279557 25279746 -94465152 - LTR50 LTR ERVL -5 790 584 1946 159 31 0 chr13 25279746 25280087 -94464811 + MER6 DNA MER2_type -10 795 -70 294 233 0 0 chr13 25280286 25280372 -94464526 + (TG)n Simple_repeat Simple_repeat 1 86 0 215 270 203 7 chr13 25280481 25280629 -94464269 + MIR SINE MIR 17 193 -69 1550 82 32 9 chr13 25281562 25281781 -94463117 + L1PB1 LINE L1 5927 6150 -1 327 317 10 0 chr13 25282822 25282923 -94461975 + MER5B DNA MER1_type 70 171 -7 718 201 12 6 chr13 25283004 25283168 -94461730 - MER5A DNA MER1_type -2 187 23 1339 181 47 56 chr13 25283569 25283929 -94460969 - L1MB3 LINE L1 -1 6182 5826 447 283 91 24 chr13 25283936 25284133 -94460765 + MIR SINE MIR 5 212 -50 2159 126 3 7 chr13 25284627 25284936 -94459962 + AluSx SINE Alu 1 308 -4 639 227 29 29 chr13 25285032 25285204 -94459694 + MER5B DNA MER1_type 3 174 -4 1861 251 8 23 chr13 25285251 25285774 -94459124 - L1M4 LINE L1 -1678 4468 3954 355 212 75 137 chr13 25286694 25286935 -94457963 - MLT1K LTR MaLR -2 586 361 1363 205 47 26 chr13 25287315 25287656 -94457242 + MER7A DNA MER2_type 1 346 0 324 0 0 0 chr13 25288421 25288457 -94456441 + (CA)n Simple_repeat Simple_repeat 2 37 0 2427 80 0 16 chr13 25288629 25288940 -94455958 - AluSp SINE Alu -7 306 1 218 291 0 0 chr13 25290382 25290437 -94454461 + MIR SINE MIR 95 149 -113 300 116 23 0 chr13 25290896 25290939 -94453959 + MER41C LTR ERV1 23 66 -488 243 111 28 0 chr13 25290935 25290971 -94453927 + MER41C LTR ERV1 25 61 -493 * 3149 131 82 0 chr13 25290971 25291461 -94453437 + MER41C LTR ERV1 25 554 0 221 258 31 82 chr13 25291487 25291584 -94453314 + MIR SINE MIR 92 183 -79 248 278 67 0 chr13 25291684 25291774 -94453124 - MER117 DNA MER1_type -37 160 65 2294 92 3 0 chr13 25292490 25292795 -94452103 - AluSp SINE Alu -4 309 4 7032 93 17 14 chr13 25293257 25294276 -94450622 + HERVH LTR ERV1 1966 2987 -4726 752 167 20 13 chr13 25294270 25294420 -94450478 + HERVH LTR ERV1 3140 3290 -4423 * 3334 122 6 2 chr13 25294410 25294910 -94449988 + HERVH LTR ERV1 3492 3993 -3720 4452 141 1 1 chr13 25294912 25295574 -94449324 + HERVH LTR ERV1 4488 5149 -2564 969 121 0 0 chr13 25295575 25295724 -94449174 + HERVH LTR ERV1 5600 5748 -1965 1850 74 8 0 chr13 25295755 25296013 -94448885 + HERVH LTR ERV1 7429 7688 -25 1603 143 32 11 chr13 25296022 25296043 -94448855 + L1PA15 LINE L1 5880 5899 -266 3474 62 2 9 chr13 25296043 25296494 -94448404 + LTR7 LTR ERV1 1 448 -2 1603 143 32 11 chr13 25296494 25296752 -94448146 + L1PA15 LINE L1 5899 6165 0 1069 138 13 154 chr13 25297281 25297579 -94447319 - LTR8 LTR ERV1 0 691 436 8414 95 20 18 chr13 25297679 25298930 -94445968 - HERVH LTR ERV1 -6459 1254 1 3491 62 5 7 chr13 25298932 25299381 -94445517 - LTR7 LTR ERV1 -2 448 1 2495 141 10 5 chr13 25299381 25299770 -94445128 - L1PA15 LINE L1 -260 5905 5515 321 96 19 0 chr13 25299767 25299819 -94445079 + L1PA15 LINE L1 5474 5526 -642 * 720 287 116 10 chr13 25300072 25300522 -94444376 + MLT1G LTR MaLR 13 549 -41 622 349 7 0 chr13 25300763 25301032 -94443866 - L1ME LINE L1 -356 5765 5495 1877 114 36 23 chr13 25301437 25301743 -94443155 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr13 25301864 25301885 -94443013 + AT_rich Low_complexity Low_complexity 1 21 0 342 343 30 18 chr13 25303528 25303697 -94441201 - MIR SINE MIR -6 256 86 266 174 0 0 chr13 25306057 25306103 -94438795 - MLT2C2 LTR ERVL 0 554 509 249 65 0 0 chr13 25306123 25306154 -94438744 + MLT2C2 LTR ERVL 434 464 0 183 184 0 0 chr13 25306162 25306200 -94438698 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 2044 196 43 5 chr13 25306205 25306603 -94438295 - MLT2C2 LTR ERVL -48 416 4 414 349 9 5 chr13 25306972 25307187 -94437711 - L1ME2 LINE L1 -107 6126 5911 1387 256 45 8 chr13 25307259 25307778 -94437120 - L1ME2 LINE L1 -457 5776 5239 904 188 4 2 chr13 25307781 25308027 -94436871 - AluJb SINE Alu -17 295 2 603 238 72 18 chr13 25308033 25308256 -94436642 - L1ME2 LINE L1 -983 5232 4998 1934 170 89 25 chr13 25308308 25308713 -94436185 - Tigger2a DNA MER2_type -3 431 1 358 284 5 59 chr13 25309104 25309217 -94435681 - L1ME2 LINE L1 -4576 1820 1721 1918 154 0 6 chr13 25309217 25309529 -94435369 - AluSx SINE Alu -2 310 1 358 284 5 59 chr13 25309529 25309619 -94435279 - L1ME2 LINE L1 -4675 1721 1628 * 1583 192 60 6 chr13 25309615 25309964 -94434934 - L1MD1 LINE L1 0 6242 5875 539 242 80 105 chr13 25309953 25310391 -94434507 - L1ME2 LINE L1 -4756 1640 1214 * 1711 231 62 9 chr13 25312373 25312810 -94432088 + MLT1C LTR MaLR 8 467 0 1344 235 87 20 chr13 25313359 25313797 -94431101 - MLT1C LTR MaLR 0 467 1 698 208 127 34 chr13 25315548 25315935 -94428963 - MER31B LTR ERV1 0 543 1 276 264 104 32 chr13 25316039 25316164 -94428734 - MIR SINE MIR -71 191 58 293 230 127 56 chr13 25316701 25316827 -94428071 + MIR3 SINE MIR 23 157 -51 3345 288 171 29 chr13 25317460 25319416 -94425482 - L2 LINE L2 -1 3312 1060 316 266 36 27 chr13 25319441 25319552 -94425346 - MIR SINE MIR -93 115 16 1638 163 3 26 chr13 25319575 25319881 -94425017 + AluJo SINE Alu 1 299 -13 22 0 0 0 chr13 25320015 25320037 -94424861 + AT_rich Low_complexity Low_complexity 1 22 0 5573 116 19 26 chr13 25320180 25320889 -94424009 + L1PA13 LINE L1 4757 5467 -711 2249 87 3 6 chr13 25320889 25321201 -94423697 + AluY SINE Alu 1 311 0 5573 116 19 26 chr13 25321201 25321908 -94422990 + L1PA13 LINE L1 5467 6178 0 319 248 34 43 chr13 25321910 25322027 -94422871 - L1MEd LINE L1 -4919 1210 1095 243 231 81 46 chr13 25322152 25322325 -94422573 - L1MDa LINE L1 -4954 1469 1291 2536 119 14 5 chr13 25322726 25323097 -94421801 - THE1C LTR MaLR -1 374 1 10499 114 30 15 chr13 25323097 25324655 -94420243 - THE1C-int LTR MaLR 0 1580 1 2505 116 16 8 chr13 25324655 25325027 -94419871 - THE1C LTR MaLR 0 375 1 575 103 0 0 chr13 25325430 25325508 -94419390 + AluS SINE Alu 2 79 -233 274 268 78 13 chr13 25325609 25325762 -94419136 - L1MCa LINE L1 -5410 1016 854 393 121 0 30 chr13 25326760 25326826 -94418072 - MLT2A2 LTR ERVL 0 453 390 217 113 0 48 chr13 25326826 25326888 -94418010 + (TTTG)n Simple_repeat Simple_repeat 3 61 0 2035 190 55 65 chr13 25326888 25327393 -94417505 - MLT2B3 LTR ERVL -54 500 1 661 276 63 82 chr13 25327979 25328634 -94416264 - L1MEd LINE L1 -5021 1098 457 2018 102 0 4 chr13 25329034 25329309 -94415589 + AluSg SINE Alu 18 291 -19 184 329 73 12 chr13 25330627 25330709 -94414189 + MIR SINE MIR 97 183 -79 2105 106 13 3 chr13 25331076 25331378 -94413520 - AluSx SINE Alu -7 305 1 287 189 0 124 chr13 25335015 25335200 -94409698 + G-rich Low_complexity Low_complexity 3 164 0 302 229 57 0 chr13 25336005 25336075 -94408823 - MER5A DNA MER1_type -71 118 45 901 174 25 0 chr13 25336865 25337101 -94407797 + CT-rich Low_complexity Low_complexity 1 241 0 243 334 175 25 chr13 25338389 25338835 -94406063 + L2 LINE L2 2174 2686 -628 260 293 81 32 chr13 25339080 25339203 -94405695 + L2 LINE L2 2961 3089 -224 21 0 0 0 chr13 25339753 25339774 -94405124 + AT_rich Low_complexity Low_complexity 1 21 0 1141 176 40 22 chr13 25341451 25341678 -94403220 + MER46A DNA MER2_type 2 232 -4 23 0 0 0 chr13 25341901 25341924 -94402974 + AT_rich Low_complexity Low_complexity 1 23 0 304 312 78 7 chr13 25341943 25342097 -94402801 + MIR SINE MIR 20 184 -78 181 269 13 51 chr13 25342812 25342890 -94402008 - MIR SINE MIR -144 118 44 1292 123 33 5 chr13 25343665 25343876 -94401022 + MSTB1 LTR MaLR 179 395 -37 1315 130 10 91 chr13 25344022 25344066 -94400832 - L1MB4 LINE L1 -1 6179 6133 2173 95 3 7 chr13 25344066 25344360 -94400538 - AluSg SINE Alu -17 293 1 1315 130 10 91 chr13 25344360 25344509 -94400389 - L1MB4 LINE L1 -47 6133 6018 1571 126 0 0 chr13 25344509 25344740 -94400158 + AluSq SINE Alu 73 303 -10 1315 130 10 91 chr13 25344740 25344852 -94400046 - L1MB4 LINE L1 -162 6018 5898 303 275 20 10 chr13 25345033 25345181 -94399717 - L1MB4 LINE L1 -423 5698 5621 31 0 0 0 chr13 25345283 25345314 -94399584 + AT_rich Low_complexity Low_complexity 1 31 0 215 374 43 0 chr13 25346238 25346353 -94398545 - MIR SINE MIR -69 139 20 1618 171 37 3 chr13 25346589 25346887 -94398011 - AluJo SINE Alu -4 308 1 2235 116 0 0 chr13 25346888 25347198 -94397700 - AluSx SINE Alu -2 310 1 1227 192 108 16 chr13 25347426 25347497 -94397401 - LTR52 LTR ERVL -2 419 356 347 60 20 0 chr13 25347497 25347547 -94397351 + (CA)n Simple_repeat Simple_repeat 1 51 0 1227 192 108 16 chr13 25347547 25347856 -94397042 - LTR52 LTR ERVL -65 356 4 2119 283 46 35 chr13 25349277 25350462 -94394436 + L1M4 LINE L1 2218 3416 -2730 236 385 7 21 chr13 25351744 25351887 -94393011 + MIR SINE MIR 10 150 -112 5269 166 73 41 chr13 25352040 25352374 -94392524 - L1MC2 LINE L1 0 6344 6022 9372 23 7 199 chr13 25352374 25354082 -94390816 + SVA Other Other 1 1380 -6 5269 166 73 41 chr13 25354082 25354881 -94390017 - L1MC2 LINE L1 -322 6022 5141 1820 161 0 0 chr13 25354881 25355193 -94389705 - AluSx SINE Alu 0 312 1 5269 166 73 41 chr13 25355193 25355527 -94389371 - L1MC2 LINE L1 -1203 5141 4819 965 264 75 20 chr13 25355729 25356024 -94388874 - L1ME3A LINE L1 0 6170 5860 1398 87 101 5 chr13 25356049 25356256 -94388642 + MER30 DNA MER1_type 4 230 0 602 199 20 139 chr13 25356270 25356471 -94388427 - MER58C DNA MER1_type -1 214 38 1158 242 139 21 chr13 25356491 25356967 -94387931 - L1ME3A LINE L1 -367 5803 5272 231 167 24 0 chr13 25357029 25357071 -94387827 - LTR67 LTR ERVL -9 548 506 1293 246 91 48 chr13 25357096 25357536 -94387362 - MLT2B1 LTR ERVL -61 459 1 252 225 45 22 chr13 25357579 25357668 -94387230 - LTR67 LTR ERVL -107 450 360 701 264 146 21 chr13 25358313 25358593 -94386305 - MLT1J LTR MaLR -175 336 22 25 23 0 23 chr13 25358620 25358644 -94386254 + AT_rich Low_complexity Low_complexity 1 25 -17 2168 101 3 0 chr13 25358644 25358942 -94385956 - AluSp SINE Alu -14 299 1 25 23 0 23 chr13 25358942 25358960 -94385938 + AT_rich Low_complexity Low_complexity 25 42 0 3418 163 3 24 chr13 25359714 25360328 -94384570 - L1PB4 LINE L1 -2 6154 5554 2321 148 50 36 chr13 25360333 25360916 -94383982 - L1PB4 LINE L1 -678 5478 4882 1517 173 21 7 chr13 25361261 25361545 -94383353 - AluJo SINE Alu -24 288 1 1775 142 0 4 chr13 25361999 25362266 -94382632 - AluSx SINE Alu -46 266 1 278 320 61 44 chr13 25362473 25362503 -94382395 - L1MC/D LINE L1 -304 5817 5789 3213 162 18 11 chr13 25362503 25363058 -94381840 + MER89 LTR ERV1 1 559 0 278 320 61 44 chr13 25363058 25363313 -94381585 - L1MC/D LINE L1 -332 5789 5618 326 245 21 64 chr13 25363478 25363572 -94381326 - LTR16A LTR ERVL -201 249 160 288 290 40 40 chr13 25363702 25363802 -94381096 - L2 LINE L2 -94 3178 3079 239 213 225 12 chr13 25364027 25364107 -94380791 - MIR SINE MIR -33 229 133 222 280 0 0 chr13 25364330 25364380 -94380518 - L2 LINE L2 -1384 1930 1881 2227 116 51 23 chr13 25366703 25367057 -94377841 + THE1B LTR MaLR 1 364 0 11825 97 5 1 chr13 25367057 25368631 -94376267 + THE1B-int LTR MaLR 1 1580 0 2044 118 91 21 chr13 25368631 25368971 -94375927 + THE1B LTR MaLR 1 364 0 281 322 0 11 chr13 25368976 25369066 -94375832 - L2 LINE L2 -3 3269 3181 * 316 264 118 0 chr13 25369065 25369175 -94375723 + MIR SINE MIR 90 212 -50 226 357 56 30 chr13 25369172 25369388 -94375510 - L3b LINE CR1 -206 1377 1151 * 2026 124 0 20 chr13 25369388 25369687 -94375211 - AluSq SINE Alu -20 293 1 226 357 56 30 chr13 25369687 25369739 -94375159 - L3b LINE CR1 -432 1151 1102 244 293 38 19 chr13 25370126 25370232 -94374666 + L1ME4a LINE L1 5681 5788 -2020 339 274 111 0 chr13 25370462 25370579 -94374319 + L1ME4a LINE L1 5977 6106 -15 202 259 185 44 chr13 25370642 25370777 -94374121 + MIR3 SINE MIR 19 172 -36 322 309 26 14 chr13 25370894 25371022 -94373876 - MIR SINE MIR -66 142 17 1703 146 48 0 chr13 25373584 25373884 -94371014 + AluSg SINE Alu 1 313 0 605 226 0 0 chr13 25375016 25375140 -94369758 - MER3 DNA MER1_type -5 204 81 21 0 0 0 chr13 25375146 25375167 -94369731 + AT_rich Low_complexity Low_complexity 1 21 0 2417 51 0 0 chr13 25375978 25376273 -94368625 - AluY SINE Alu -16 295 1 686 266 43 18 chr13 25376504 25376722 -94368176 + MIR SINE MIR 33 249 -13 1124 164 65 11 chr13 25376780 25377042 -94367856 - L1MA4 LINE L1 0 6300 6025 227 278 35 52 chr13 25377473 25377588 -94367310 + MIR SINE MIR 128 240 -22 1128 132 11 0 chr13 25377678 25377852 -94367046 + AluSg/x SINE Alu 137 312 0 180 326 141 0 chr13 25377943 25378078 -94366820 + MIR3 SINE MIR 30 183 -25 27 0 0 0 chr13 25378180 25378207 -94366691 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr13 25378621 25378658 -94366240 + GC_rich Low_complexity Low_complexity 1 37 0 512 279 36 0 chr13 25378797 25378937 -94365961 + MIR SINE MIR 69 213 -49 625 316 56 5 chr13 25379071 25379286 -94365612 - MIR SINE MIR -30 232 7 1593 174 36 0 chr13 25379301 25379576 -94365322 + AluJo SINE Alu 4 288 -24 1019 172 0 0 chr13 25380361 25380530 -94364368 - AluJo SINE Alu -133 179 11 2169 113 0 28 chr13 25380763 25381082 -94363816 + AluSx SINE Alu 1 310 -2 561 262 71 6 chr13 25382194 25382377 -94362521 + MIR SINE MIR 13 207 -55 3599 241 117 20 chr13 25383168 25383812 -94361086 + Zaphod DNA AcHobo 9 590 -3441 2092 106 3 7 chr13 25383812 25384113 -94360785 + AluSx SINE Alu 1 300 -12 3599 241 117 20 chr13 25384113 25384694 -94360204 + Zaphod DNA AcHobo 590 1352 -2679 1469 167 7 25 chr13 25385065 25385341 -94359557 - AluJb SINE Alu -14 298 28 2480 108 5 42 chr13 25386304 25386381 -94358517 - THE1B LTR MaLR 0 364 286 1801 123 3 69 chr13 25386381 25386720 -94358178 + AluSx SINE Alu 1 312 0 2480 108 5 42 chr13 25386720 25387020 -94357878 - THE1B LTR MaLR -78 286 1 258 115 19 0 chr13 25387582 25387634 -94357264 + L1MB2 LINE L1 5864 5916 -255 2308 187 6 39 chr13 25387832 25388414 -94356484 + L1M3 LINE L1 4930 5486 -694 2123 100 0 0 chr13 25388414 25388718 -94356180 + AluSc SINE Alu 1 304 0 2308 187 6 39 chr13 25388718 25388841 -94356057 + L1M3 LINE L1 5486 5612 -568 2295 90 3 0 chr13 25388841 25389152 -94355746 + AluSx SINE Alu 1 312 0 23 0 0 0 chr13 25390356 25390379 -94354519 + AT_rich Low_complexity Low_complexity 1 23 0 482 279 70 6 chr13 25390407 25390565 -94354333 + MIR SINE MIR 81 248 -14 367 279 66 0 chr13 25390641 25390763 -94354135 + L2 LINE L2 2418 2547 -767 3735 126 11 42 chr13 25390764 25391400 -94353498 + L1MC1 LINE L1 5718 6333 0 778 278 158 41 chr13 25391488 25392116 -94352782 + L2 LINE L2 2530 3305 -8 2025 161 13 40 chr13 25392423 25392801 -94352097 + MLT1B LTR MaLR 1 368 -22 531 197 197 0 chr13 25393010 25393137 -94351761 + LTR16C LTR ERVL 98 249 -242 807 189 25 51 chr13 25393371 25393408 -94351490 + LTR16C LTR ERVL 299 335 -156 1407 214 57 52 chr13 25393408 25393796 -94351102 - MLT1B LTR MaLR 0 390 1 807 189 25 51 chr13 25393796 25393954 -94350944 + LTR16C LTR ERVL 335 489 -2 238 220 99 22 chr13 25393954 25394035 -94350863 - MER103 DNA DNA -21 145 58 1520 83 0 0 chr13 25394035 25394228 -94350670 - AluSg/x SINE Alu -9 303 111 299 342 57 19 chr13 25395007 25395165 -94349733 + MIR SINE MIR 87 250 -12 261 252 135 54 chr13 25395238 25395349 -94349549 + MIR SINE MIR 21 140 -68 263 172 183 97 chr13 25395688 25395874 -94349024 - MER112 DNA MER1_type -4 256 55 877 107 28 202 chr13 25395903 25395965 -94348933 + MER7A DNA MER2_type 1 72 -2966 2160 103 0 0 chr13 25395965 25396255 -94348643 + AluSq SINE Alu 7 296 -17 877 107 28 202 chr13 25396255 25396445 -94348453 + MER7A DNA MER2_type 72 207 -139 * 1143 193 16 0 chr13 25396444 25396636 -94348262 + MSTD LTR MaLR 202 396 0 2003 151 40 81 chr13 25396828 25396881 -94348017 - MSTA LTR MaLR 0 428 374 3069 65 0 0 chr13 25396881 25397265 -94347633 - L1PA7 LINE L1 -5 6149 5766 2003 151 40 81 chr13 25397265 25397655 -94347243 - MSTA LTR MaLR -54 374 3 319 303 15 53 chr13 25397742 25397874 -94347024 + MER5B DNA MER1_type 51 177 -1 1957 139 35 30 chr13 25398475 25398843 -94346055 - L1MB3 LINE L1 0 6183 5814 289 190 35 0 chr13 25398885 25398943 -94345955 - L1MB2 LINE L1 -2 6169 6110 2643 137 17 2 chr13 25399032 25399454 -94345444 - L1MB3 LINE L1 -77 6106 5679 1827 143 18 0 chr13 25400008 25400288 -94344610 + AluSx SINE Alu 11 295 -17 994 248 98 10 chr13 25400433 25400739 -94344159 + MER46C DNA MER2_type 6 338 0 219 125 0 0 chr13 25401253 25401293 -94343605 + (TG)n Simple_repeat Simple_repeat 2 41 0 1333 264 71 68 chr13 25402492 25403213 -94341685 - L1MEd LINE L1 -4864 1255 533 238 285 102 36 chr13 25404780 25404917 -94339981 - L2 LINE L2 -46 3267 3122 3703 127 114 28 chr13 25405692 25406414 -94338484 - LTR1 LTR ERV1 0 785 2 480 238 79 37 chr13 25406515 25406679 -94338219 - MER91A DNA MER1_type -25 171 1 228 347 42 11 chr13 25408734 25408829 -94336069 + L2 LINE L2 3214 3311 -2 527 300 82 67 chr13 25409503 25409833 -94335065 + L2 LINE L2 2926 3260 -12 1955 123 0 20 chr13 25410023 25410323 -94334575 - AluSx SINE Alu 0 312 19 1921 102 0 0 chr13 25410543 25410799 -94334099 + AluSg SINE Alu 1 256 -54 325 122 0 0 chr13 25410899 25410948 -94333950 + AluSg SINE Alu 246 294 -6 2345 118 49 3 chr13 25412060 25412408 -94332490 + THE1B LTR MaLR 1 364 0 192 313 47 0 chr13 25412650 25412714 -94332184 + MIR SINE MIR 156 222 -40 187 261 144 65 chr13 25412789 25412942 -94331956 + L2 LINE L2 2918 3082 -190 2311 61 3 3 chr13 25413054 25413347 -94331551 - AluY SINE Alu -5 306 14 1395 216 77 70 chr13 25413385 25413907 -94330991 + MER39 LTR ERV1 1 707 0 304 339 24 24 chr13 25413909 25413954 -94330944 - MIR3 SINE MIR -45 163 119 1431 172 62 44 chr13 25413954 25414192 -94330706 + MER2 DNA MER2_type 1 248 -96 2037 114 10 3 chr13 25414192 25414491 -94330407 - AluSq SINE Alu -12 301 1 1431 172 62 44 chr13 25414491 25414590 -94330308 + MER2 DNA MER2_type 248 344 0 304 339 24 24 chr13 25414590 25414668 -94330230 - MIR3 SINE MIR -88 120 40 2199 115 0 0 chr13 25414898 25415203 -94329695 + AluSc SINE Alu 1 305 -4 210 256 23 0 chr13 25415283 25415326 -94329572 - L2 LINE L2 -17 3255 3212 683 244 105 60 chr13 25415633 25416149 -94328749 + MER34C LTR ERV1 47 585 0 405 0 0 0 chr13 25416321 25416366 -94328532 + (TG)n Simple_repeat Simple_repeat 1 45 0 1702 177 0 19 chr13 25416982 25417299 -94327599 + AluJo SINE Alu 2 312 0 786 260 100 74 chr13 25417979 25418479 -94326419 - LTR33 LTR ERVL -8 513 1 216 0 0 0 chr13 25418759 25418783 -94326115 + (CA)n Simple_repeat Simple_repeat 1 24 0 2019 123 7 0 chr13 25419508 25419801 -94325097 + AluSx SINE Alu 1 295 -17 426 212 142 9 chr13 25419895 25420008 -94324890 + MIR SINE MIR 95 222 -40 428 240 48 24 chr13 25420056 25420181 -94324717 - MLT1J2 LTR MaLR -56 394 267 315 233 283 0 chr13 25420871 25420991 -94323907 - MIR SINE MIR -16 246 93 420 188 228 7 chr13 25422544 25422693 -94322205 - MER20B DNA MER1_type -596 187 6 4040 274 75 35 chr13 25423914 25424676 -94320222 + L1MEc LINE L1 46 776 -5620 2136 106 3 0 chr13 25424676 25424968 -94319930 - AluSp SINE Alu -20 293 1 4040 274 75 35 chr13 25424968 25425939 -94318959 + L1MEc LINE L1 776 1849 -4547 203 177 32 16 chr13 25425939 25426001 -94318897 + T-rich Low_complexity Low_complexity 1 63 0 5907 45 11 8 chr13 25426038 25426773 -94318125 - SVA Other Other 0 1386 650 1181 197 18 18 chr13 25426791 25427065 -94317833 + L1MEc LINE L1 1836 2109 -4287 3113 135 32 50 chr13 25427326 25427961 -94316937 + MER4B LTR ERV1 2 779 0 325 309 80 37 chr13 25428150 25428183 -94316715 + L2 LINE L2 2896 2926 -346 1902 140 14 0 chr13 25428183 25428476 -94316422 - AluSx SINE Alu -13 299 3 325 309 80 37 chr13 25428476 25428630 -94316268 + L2 LINE L2 2926 3091 -181 999 168 37 47 chr13 25428706 25428896 -94316002 - MER5A DNA MER1_type 0 189 2 3640 201 99 8 chr13 25428946 25429067 -94315831 - MER21B LTR ERV1 -1 862 753 222 91 0 0 chr13 25429067 25429100 -94315798 + (CAATT)n Simple_repeat Simple_repeat 4 36 0 3640 201 99 8 chr13 25429100 25429755 -94315143 - MER21B LTR ERV1 -110 753 15 282 29 0 0 chr13 25429757 25429792 -94315106 + (CA)n Simple_repeat Simple_repeat 2 36 0 213 190 17 17 chr13 25429792 25429850 -94315048 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 336 253 12 24 chr13 25429869 25429952 -94314946 + L2 LINE L2 3232 3313 0 2735 135 108 62 chr13 25430494 25431078 -94313820 + LTR36 LTR ERV1 1 611 0 253 241 47 39 chr13 25432715 25432827 -94312071 + LTR50 LTR ERVL 436 791 -4 1480 194 3 25 chr13 25433278 25433592 -94311306 - AluJo SINE Alu -2 310 4 1363 114 0 0 chr13 25434681 25434874 -94310024 - AluSp SINE Alu -4 309 117 862 127 0 0 chr13 25434875 25435001 -94309897 + AluSq/x SINE Alu 2 127 -185 388 280 104 33 chr13 25435001 25435183 -94309715 - MIR SINE MIR -3 259 65 1611 210 113 12 chr13 25436767 25437191 -94307707 - MLT1C LTR MaLR 0 467 1 252 267 40 13 chr13 25437483 25437558 -94307340 - L2 LINE L2 -42 3230 3154 403 285 135 25 chr13 25438013 25438213 -94306685 + MIR SINE MIR 20 241 -21 256 320 122 15 chr13 25438445 25438642 -94306256 + L2 LINE L2 2521 2738 -576 1709 146 19 0 chr13 25438775 25439042 -94305856 + AluJb SINE Alu 1 272 -40 464 32 16 0 chr13 25439048 25439110 -94305788 + (TC)n Simple_repeat Simple_repeat 2 64 0 346 231 0 0 chr13 25439120 25439185 -94305713 - L1MC4 LINE L1 -1339 6703 6639 1822 188 29 6 chr13 25440036 25440375 -94304523 + MLT1A1 LTR MaLR 3 349 -16 1734 181 24 86 chr13 25440375 25440784 -94304114 - MSTD LTR MaLR 0 396 13 248 161 34 186 chr13 25441542 25441606 -94303292 + MER94 DNA DNA 1 41 -93 2820 13 0 0 chr13 25441606 25441924 -94302974 - AluYb8 SINE Alu 0 318 1 248 161 34 186 chr13 25441924 25441977 -94302921 + MER94 DNA DNA 41 100 -34 252 192 164 14 chr13 25442107 25442180 -94302718 - MIR3 SINE MIR -7 201 118 22 35 0 0 chr13 25442233 25442262 -94302636 + AT_rich Low_complexity Low_complexity 1 29 0 2043 114 3 0 chr13 25442262 25442551 -94302347 - AluSp SINE Alu -23 290 1 2079 158 0 0 chr13 25443152 25443462 -94301436 + AluJb SINE Alu 1 310 -2 507 299 121 18 chr13 25443489 25443713 -94301185 + MIR SINE MIR 16 262 0 933 272 50 53 chr13 25444844 25445324 -94299574 - MLT1H LTR MaLR 0 549 1 213 321 220 0 chr13 25445958 25446067 -94298831 + MIR SINE MIR 17 149 -113 1991 146 125 31 chr13 25446842 25447233 -94297665 - MSTA LTR MaLR 0 428 1 46 83 0 0 chr13 25448326 25448435 -94296463 + AT_rich Low_complexity Low_complexity 1 109 0 1819 154 6 35 chr13 25448814 25449125 -94295773 + AluJo SINE Alu 2 303 -9 205 329 0 13 chr13 25449273 25449349 -94295549 + L2 LINE L2 3197 3271 -1 2561 180 75 58 chr13 25451777 25452361 -94292537 - MER7C DNA MER2_type -1 601 8 583 245 65 113 chr13 25452390 25452823 -94292075 + L1ME LINE L1 6 417 -5653 1725 253 99 32 chr13 25452841 25453789 -94291109 + L1ME LINE L1 498 1481 -4599 308 133 0 0 chr13 25453789 25453834 -94291064 + Alu SINE Alu 1 45 -263 431 246 7 51 chr13 25456401 25456539 -94288359 + MIR SINE MIR 81 212 -50 2191 125 6 10 chr13 25456654 25456967 -94287931 + AluSx SINE Alu 1 312 0 504 309 46 60 chr13 25456969 25457168 -94287730 + L1ME LINE L1 1509 1709 -4552 2276 92 0 0 chr13 25457168 25457499 -94287399 + AluY SINE Alu 1 331 0 504 309 46 60 chr13 25457499 25457712 -94287186 + L1ME LINE L1 1709 1916 -4345 * 1332 129 45 140 chr13 25457710 25457797 -94287101 - L1MB3 LINE L1 0 6183 6089 207 0 0 0 chr13 25457797 25457820 -94287078 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1643 181 15 8 chr13 25457820 25458086 -94286812 - AluJo SINE Alu -30 282 15 1332 129 45 140 chr13 25458086 25458320 -94286578 - L1MB3 LINE L1 -93 6090 5896 2385 95 0 0 chr13 25458320 25458616 -94286282 - AluY SINE Alu -15 296 1 1332 129 45 140 chr13 25458616 25458649 -94286249 - L1MB3 LINE L1 -287 5896 5861 * 5489 169 29 38 chr13 25458641 25460078 -94284820 - L1M4 LINE L1 -3748 2634 23 2034 253 70 27 chr13 25460100 25460643 -94284255 + L1ME LINE L1 1949 2554 -3526 2405 72 0 3 chr13 25460643 25460949 -94283949 - AluY SINE Alu -6 305 1 2034 253 70 27 chr13 25460949 25461241 -94283657 + L1ME LINE L1 2554 2832 -3248 209 194 0 0 chr13 25461807 25461843 -94283055 + T-rich Low_complexity Low_complexity 4 39 0 719 208 118 65 chr13 25462358 25462637 -94282261 + MLT1D LTR MaLR 133 426 -79 3100 145 45 0 chr13 25462653 25463184 -94281714 - L1MC2 LINE L1 -169 6175 5621 341 136 0 0 chr13 25463184 25463243 -94281655 + MLT1D LTR MaLR 439 497 -8 516 250 48 27 chr13 25463358 25463546 -94281352 - MIR SINE MIR -4 258 67 238 110 24 37 chr13 25464535 25464617 -94280281 + (CCCG)n Simple_repeat Simple_repeat 4 84 0 307 190 52 69 chr13 25465872 25465988 -94278910 - MER5A DNA MER1_type -72 117 4 459 287 117 74 chr13 25466760 25467178 -94277720 - MLT1K LTR MaLR -2 586 151 1730 257 18 14 chr13 25467941 25468315 -94276583 - L1ME3 LINE L1 0 6162 5784 1751 178 83 3 chr13 25468315 25468653 -94276245 - MLT1A1 LTR MaLR 0 365 1 1730 257 18 14 chr13 25468653 25468768 -94276130 - L1ME3 LINE L1 -378 5784 5671 24 0 0 0 chr13 25469201 25469225 -94275673 + AT_rich Low_complexity Low_complexity 1 24 0 202 231 0 0 chr13 25470211 25470250 -94274648 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 2203 103 7 0 chr13 25470465 25470755 -94274143 - AluSx SINE Alu -20 292 1 269 253 32 53 chr13 25470893 25470988 -94273910 + MIR SINE MIR 48 140 -122 22 0 0 0 chr13 25472165 25472187 -94272711 + AT_rich Low_complexity Low_complexity 1 22 0 231 296 0 0 chr13 25474554 25474625 -94270273 + T-rich Low_complexity Low_complexity 1 71 0 180 0 0 0 chr13 25474905 25474925 -94269973 + (TAGA)n Simple_repeat Simple_repeat 1 20 0 320 131 0 16 chr13 25474935 25474996 -94269902 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 4855 99 22 12 chr13 25475006 25475690 -94269208 + LTR8 LTR ERV1 1 691 0 3630 120 62 9 chr13 25476000 25476577 -94268321 + MER4B LTR ERV1 1 608 -2 611 214 0 15 chr13 25476582 25476713 -94268185 - MIR SINE MIR -102 160 32 23 33 0 0 chr13 25476863 25476893 -94268005 + AT_rich Low_complexity Low_complexity 1 30 0 3655 150 54 42 chr13 25476953 25477671 -94267227 + LTR8A LTR ERV1 1 727 0 310 328 79 18 chr13 25477683 25477912 -94266986 - L1ME LINE L1 -335 5786 5544 2465 80 7 0 chr13 25478395 25478695 -94266203 - AluY SINE Alu -9 302 1 225 0 0 0 chr13 25478760 25478785 -94266113 + (T)n Simple_repeat Simple_repeat 1 25 0 811 131 33 26 chr13 25478785 25478938 -94265960 + L1MA9 LINE L1 6157 6310 -2 403 242 28 95 chr13 25478952 25479414 -94265484 - L1ME4a LINE L1 -3 6118 5689 220 304 27 18 chr13 25481542 25481654 -94263244 - MIR SINE MIR -130 132 20 731 263 34 17 chr13 25482278 25482514 -94262384 + MIR SINE MIR 20 259 -3 2263 246 97 132 chr13 25482770 25483419 -94261479 - L2 LINE L2 0 3313 2643 1534 182 69 54 chr13 25483419 25483809 -94261089 - MSTD LTR MaLR 0 396 1 2263 246 97 132 chr13 25483809 25484132 -94260766 - L2 LINE L2 -670 2643 2310 1887 206 52 48 chr13 25484132 25484633 -94260265 + MLT1D LTR MaLR 1 503 -2 2263 246 97 132 chr13 25484633 25485738 -94259160 - L2 LINE L2 -1003 2310 1290 5975 55 16 4 chr13 25486356 25487113 -94257785 + MER4E LTR ERV1 1 766 0 282 276 28 55 chr13 25487113 25487247 -94257651 - MER5A DNA MER1_type -37 152 21 3935 38 0 19 chr13 25487389 25487869 -94257029 - L1PA5 LINE L1 0 6154 5684 203 318 0 23 chr13 25490935 25491023 -94253875 + MIR SINE MIR 85 170 -92 228 242 45 0 chr13 25491696 25491762 -94253136 + MIR3 SINE MIR 115 183 -25 258 246 43 0 chr13 25492978 25493047 -94251851 + MLT1J LTR MaLR 114 185 -326 1110 132 0 30 chr13 25493253 25493450 -94251448 - L1PB1 LINE L1 0 6151 5961 206 260 117 0 chr13 25493580 25493657 -94251241 + L2 LINE L2 3162 3247 -66 456 248 156 0 chr13 25495016 25495157 -94249741 + MIR SINE MIR 100 262 0 2320 124 33 28 chr13 25495311 25495673 -94249225 - THE1B LTR MaLR 0 364 1 559 299 32 16 chr13 25496457 25496644 -94248254 + MIR3 SINE MIR 16 205 -3 2545 99 14 8 chr13 25496958 25497311 -94247587 - THE1A LTR MaLR 0 355 1 1578 203 7 14 chr13 25497407 25497703 -94247195 - AluJb SINE Alu -18 294 1 237 337 71 0 chr13 25499527 25499625 -94245273 + L2 LINE L2 3168 3272 0 1297 293 82 7 chr13 25501104 25501569 -94243329 + MLT1J LTR MaLR 7 506 -5 438 276 53 58 chr13 25501582 25501825 -94243073 + LTR33 LTR ERVL 83 324 -197 238 321 43 41 chr13 25502592 25502772 -94242126 + L2 LINE L2 2782 2965 -307 948 163 0 109 chr13 25502774 25502995 -94241903 + MER3 DNA MER1_type 10 206 -3 602 311 91 76 chr13 25503253 25503636 -94241262 + L2 LINE L2 2854 3242 -30 287 49 24 0 chr13 25503829 25503870 -94241028 + (GA)n Simple_repeat Simple_repeat 1 42 0 533 294 169 47 chr13 25504774 25505453 -94239445 + HAL1 LINE L1 2 796 -1711 1104 142 73 10 chr13 25505453 25505657 -94239241 - MER20 DNA MER1_type 0 219 3 533 294 169 47 chr13 25505657 25505784 -94239114 + HAL1 LINE L1 796 906 -1601 256 223 0 0 chr13 25506231 25506309 -94238589 + L1MC5 LINE L1 7837 8014 -28 1559 203 45 0 chr13 25506318 25506608 -94238290 - AluJo SINE Alu -9 303 1 191 223 96 128 chr13 25506800 25506894 -94238004 + L2 LINE L2 2955 3045 -227 395 220 30 20 chr13 25506964 25507064 -94237834 + MER5A DNA MER1_type 86 186 -3 321 243 118 15 chr13 25507138 25507274 -94237624 + L1ME4a LINE L1 5940 6089 -32 1852 154 0 18 chr13 25509259 25509578 -94235320 - AluJo SINE Alu 0 314 1 1112 132 0 2 chr13 25510067 25510305 -94234593 + AluSx SINE Alu 2 273 -39 189 74 0 0 chr13 25510314 25510341 -94234557 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2348 53 0 7 chr13 25510578 25510860 -94234038 - AluY SINE Alu -4 307 28 857 10 10 0 chr13 25511227 25511329 -94233569 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 23 33 0 0 chr13 25511958 25511988 -94232910 + AT_rich Low_complexity Low_complexity 1 30 0 712 251 55 64 chr13 25512204 25512534 -94232364 - L1ME3 LINE L1 0 6162 5836 812 164 8 8 chr13 25513095 25513229 -94231669 - AluJo SINE Alu -178 134 1 1655 157 61 14 chr13 25513236 25513516 -94231382 - AluJb SINE Alu -19 293 1 2414 100 0 0 chr13 25514127 25514426 -94230472 - AluSx SINE Alu -13 299 1 184 236 112 45 chr13 25514490 25514579 -94230319 - L2 LINE L2 -10 3303 3209 191 262 0 0 chr13 25514680 25514722 -94230176 + L2 LINE L2 3261 3302 -11 523 276 72 0 chr13 25514930 25515082 -94229816 - MIR SINE MIR -16 246 84 658 280 70 5 chr13 25515986 25516200 -94228698 + MIR SINE MIR 3 230 -32 364 179 0 0 chr13 25516919 25516975 -94227923 - L2 LINE L2 0 3272 3217 * 416 214 232 36 chr13 25516968 25517136 -94227762 + MIR SINE MIR 48 248 -14 952 183 24 28 chr13 25517909 25518122 -94226776 + MER20 DNA MER1_type 1 212 -7 194 221 150 26 chr13 25518628 25518741 -94226157 + L2 LINE L2 2148 2274 -1040 2564 62 0 7 chr13 25519092 25519401 -94225497 - AluY SINE Alu -4 307 1 233 250 67 50 chr13 25519569 25519689 -94225209 - MIR SINE MIR -65 143 22 376 179 0 0 chr13 25520558 25520625 -94224273 - L1P5 LINE L1 -522 5634 5568 1926 106 0 19 chr13 25520980 25521245 -94223653 + AluSx SINE Alu 1 260 -52 394 333 59 15 chr13 25522136 25522271 -94222627 + MIR SINE MIR 9 149 -113 1833 177 0 23 chr13 25522313 25522623 -94222275 + AluJb SINE Alu 1 303 -9 200 274 48 0 chr13 25522783 25522845 -94222053 + MIR SINE MIR 197 261 -1 4480 187 26 19 chr13 25523529 25524230 -94220668 - L1MB3 LINE L1 -3 6180 5486 210 37 0 0 chr13 25524230 25524257 -94220641 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 4480 187 26 19 chr13 25524257 25525051 -94219847 - L1MB3 LINE L1 -697 5486 4675 457 261 52 0 chr13 25525061 25525120 -94219778 + MIR SINE MIR 117 171 -91 234 0 0 0 chr13 25525120 25525146 -94219752 + (TG)n Simple_repeat Simple_repeat 2 27 0 457 261 52 0 chr13 25525146 25525201 -94219697 + MIR SINE MIR 171 237 -25 27 49 0 0 chr13 25525201 25525242 -94219656 + AT_rich Low_complexity Low_complexity 1 41 0 296 282 55 74 chr13 25525443 25525645 -94219253 + MIR SINE MIR 52 249 -13 1968 134 41 0 chr13 25526193 25526483 -94218415 - AluSx SINE Alu -10 302 1 21 57 0 0 chr13 25527105 25527140 -94217758 + AT_rich Low_complexity Low_complexity 1 35 0 203 156 0 0 chr13 25527625 25527657 -94217241 + (CA)n Simple_repeat Simple_repeat 1 32 0 397 257 112 33 chr13 25528280 25528432 -94216466 + L1ME4a LINE L1 5942 6105 -16 341 290 131 16 chr13 25528817 25529000 -94215898 - L1ME4a LINE L1 -209 5912 5709 256 254 0 56 chr13 25529017 25529088 -94215810 - L2 LINE L2 0 3272 3206 1357 199 38 72 chr13 25529218 25529609 -94215289 + MLT1B LTR MaLR 1 378 -12 216 196 89 0 chr13 25529613 25529669 -94215229 - L2 LINE L2 -266 3047 2987 364 347 57 17 chr13 25530486 25530662 -94214236 - L2 LINE L2 -609 2705 2523 * 803 304 149 9 chr13 25530653 25531110 -94213788 + L2 LINE L2 2763 3297 -16 373 270 56 51 chr13 25531100 25531296 -94213602 - L2 LINE L2 -793 2521 2325 * 1267 154 139 4 chr13 25531297 25531564 -94213334 + MLT1D LTR MaLR 1 303 -202 480 117 0 0 chr13 25532539 25532616 -94212282 + (CA)n Simple_repeat Simple_repeat 2 78 0 480 81 0 0 chr13 25533503 25533577 -94211321 + (TC)n Simple_repeat Simple_repeat 1 74 0 1594 182 45 18 chr13 25533785 25534275 -94210623 - MER74A LTR ERVL 0 558 1 215 171 98 0 chr13 25534425 25534466 -94210432 + L2 LINE L2 3210 3254 -18 317 300 99 41 chr13 25534488 25534731 -94210167 + L2 LINE L2 3002 3258 -14 333 287 100 34 chr13 25535776 25536031 -94208867 - L2 LINE L2 0 3313 2967 284 255 245 0 chr13 25536209 25536307 -94208591 - MER5A DNA MER1_type -2 187 66 2039 125 7 0 chr13 25536434 25536743 -94208155 + AluSx SINE Alu 1 311 0 302 28 0 0 chr13 25536747 25536783 -94208115 + AluSq/x SINE Alu 77 112 -191 569 148 0 0 chr13 25536784 25536865 -94208033 - AluS SINE Alu -229 83 3 1005 204 49 172 chr13 25536888 25537133 -94207765 - L1MC4 LINE L1 -555 7487 7213 1433 228 30 15 chr13 25537133 25537466 -94207432 - MER58B DNA MER1_type -3 338 1 1005 204 49 172 chr13 25537466 25537854 -94207044 - L1MC4 LINE L1 -829 7213 6779 216 0 0 0 chr13 25537854 25537878 -94207020 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1796 115 53 0 chr13 25537884 25538127 -94206771 - AluSg SINE Alu -48 262 7 1005 204 49 172 chr13 25538127 25538281 -94206617 - L1MC4 LINE L1 -1081 6961 6790 278 197 0 66 chr13 25538287 25538363 -94206535 + MER116 DNA Mariner 10 80 0 379 330 67 32 chr13 25538367 25538458 -94206440 - L1MC4a LINE L1 -1105 6703 6617 1898 158 24 0 chr13 25538458 25538755 -94206143 - AluSx SINE Alu -8 304 1 379 330 67 32 chr13 25538755 25538948 -94205950 - L1MC4a LINE L1 -1191 6617 6409 2465 71 0 19 chr13 25538978 25539286 -94205612 + AluY SINE Alu 1 302 -9 180 0 0 0 chr13 25539351 25539371 -94205527 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 361 231 99 0 chr13 25539763 25539854 -94205044 - MIR SINE MIR -71 191 92 963 246 32 7 chr13 25540544 25540821 -94204077 + L1PB4 LINE L1 5651 5934 -222 * 2427 174 72 18 chr13 25540580 25541139 -94203759 + L1MA9 LINE L1 5686 6274 -38 2501 84 10 0 chr13 25541785 25542094 -94202804 + AluSq SINE Alu 1 312 -1 2126 102 3 0 chr13 25543751 25544070 -94200828 - AluSx SINE Alu 0 320 1 492 273 78 7 chr13 25544233 25544387 -94200511 + L1ME4a LINE L1 5926 6090 -31 193 343 10 0 chr13 25544408 25544507 -94200391 - MIR SINE MIR -2 260 161 1637 111 4 4 chr13 25544536 25544761 -94200137 + AluSx SINE Alu 1 225 -87 272 278 28 0 chr13 25544778 25544886 -94200012 + L1M4 LINE L1 4301 4411 -1735 1753 122 0 0 chr13 25544889 25545119 -94199779 + AluSx SINE Alu 1 230 -82 3222 134 16 34 chr13 25545119 25545672 -94199226 - MER49 LTR ERV1 -380 543 1 359 224 12 12 chr13 25545689 25545774 -94199124 - MIR SINE MIR -115 147 63 2491 78 0 10 chr13 25546318 25546625 -94198273 + AluY SINE Alu 1 304 -7 467 248 118 6 chr13 25546720 25546881 -94198017 + MIR SINE MIR 79 257 -5 1025 173 51 19 chr13 25546986 25547200 -94197698 + MER58A DNA MER1_type 1 221 -3 2240 118 6 13 chr13 25547369 25547775 -94197123 - AluSp SINE Alu 0 404 1 276 197 0 70 chr13 25548138 25548172 -94196726 + GA-rich Low_complexity Low_complexity 2 30 -37 1897 92 0 34 chr13 25548172 25548434 -94196464 + AluSq SINE Alu 1 253 -60 276 197 0 70 chr13 25548434 25548470 -94196428 + GA-rich Low_complexity Low_complexity 30 67 0 1614 110 3 76 chr13 25548819 25549223 -94195675 + Charlie3 DNA MER1_type 1 2712 0 1192 136 0 0 chr13 25549238 25549414 -94195484 + AluSg/x SINE Alu 134 309 -1 232 325 65 8 chr13 25549697 25549820 -94195078 - MIR SINE MIR -131 131 2 242 303 50 30 chr13 25550001 25550100 -94194798 + MIR SINE MIR 97 197 -65 2292 95 0 0 chr13 25550128 25550449 -94194449 + AluSx SINE Alu 1 321 0 316 300 73 9 chr13 25550580 25550690 -94194208 - L2 LINE L2 -52 3220 3104 306 299 76 45 chr13 25551383 25551498 -94193400 - MIR SINE MIR -87 175 52 1235 146 173 11 chr13 25551498 25551758 -94193140 - AluJo SINE Alu 0 302 1 306 299 76 45 chr13 25551758 25551799 -94193099 - MIR SINE MIR -210 52 14 700 264 46 25 chr13 25551864 25552172 -94192726 + L2 LINE L2 2944 3313 0 2340 78 3 7 chr13 25553953 25554246 -94190652 + AluSx SINE Alu 1 292 -20 757 232 70 50 chr13 25554459 25554648 -94190250 + MLT1D LTR MaLR 2 186 -204 765 148 0 52 chr13 25554648 25554783 -94190115 + FLAM_A SINE Alu 2 129 -4 757 232 70 50 chr13 25554783 25554964 -94189934 + MLT1D LTR MaLR 186 390 0 300 228 13 51 chr13 25556206 25556285 -94188613 - L1MC5 LINE L1 -243 7718 7643 853 186 0 0 chr13 25556340 25556464 -94188434 + FLAM_C SINE Alu 1 124 -19 24 53 0 0 chr13 25556464 25556502 -94188396 + AT_rich Low_complexity Low_complexity 1 38 0 218 32 32 0 chr13 25556514 25556545 -94188353 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1012 98 8 0 chr13 25556560 25556692 -94188206 + AluJb SINE Alu 156 288 -24 403 343 43 61 chr13 25559997 25560507 -94184391 + L2 LINE L2 1242 1742 -1572 390 258 64 85 chr13 25561010 25561145 -94183753 - MIR SINE MIR -11 251 125 2548 155 31 0 chr13 25561145 25561564 -94183334 + MSTB1 LTR MaLR 1 432 0 390 258 64 85 chr13 25561564 25561657 -94183241 - MIR SINE MIR -137 125 32 230 302 128 39 chr13 25561642 25561821 -94183077 + L2 LINE L2 3119 3313 0 * 2094 119 48 23 chr13 25562778 25563131 -94181767 - THE1B LTR MaLR 0 364 3 792 189 7 0 chr13 25563542 25563690 -94181208 + FRAM SINE Alu 1 149 -17 234 333 0 0 chr13 25564220 25564307 -94180591 - L1MC4 LINE L1 -15 8027 7941 410 292 32 39 chr13 25564370 25564524 -94180374 - L2 LINE L2 0 3313 3161 1824 158 17 69 chr13 25564970 25565389 -94179509 + MER57A LTR ERV1 7 403 0 1734 112 120 12 chr13 25565856 25566115 -94178783 + AluSg SINE Alu 3 289 -21 1643 120 8 37 chr13 25566128 25566370 -94178528 + AluSg SINE Alu 56 290 -20 189 161 0 0 chr13 25567328 25567359 -94177539 - L2 LINE L2 -28 3244 3214 252 294 48 63 chr13 25567798 25567924 -94176974 + MIR3 SINE MIR 55 178 -30 2137 112 4 0 chr13 25568081 25568357 -94176541 + AluSx SINE Alu 1 277 -35 216 0 0 0 chr13 25568361 25568385 -94176513 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 450 302 71 61 chr13 25568579 25568874 -94176024 + HAL1 LINE L1 1315 1612 -895 1258 209 116 16 chr13 25568875 25569495 -94175403 + L1ME2 LINE L1 5357 6087 -77 189 74 0 0 chr13 25569497 25569524 -94175374 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2387 109 3 0 chr13 25569554 25569905 -94174993 - AluSq SINE Alu 0 352 1 22 0 0 0 chr13 25570252 25570274 -94174624 + AT_rich Low_complexity Low_complexity 1 22 0 2159 128 0 0 chr13 25570392 25570682 -94174216 - AluSx SINE Alu -22 290 1 239 243 40 14 chr13 25570880 25570954 -94173944 + HAL1b LINE L1 828 903 -445 219 211 0 39 chr13 25571167 25571219 -94173679 + GA-rich Low_complexity Low_complexity 4 53 0 1197 124 5 57 chr13 25571464 25571681 -94173217 + AluJb SINE Alu 101 307 0 182 139 70 0 chr13 25571811 25571854 -94173044 - L2 LINE L2 -2 3311 3266 2260 83 7 0 chr13 25573509 25573814 -94171084 + AluSc SINE Alu 1 307 0 1415 224 62 3 chr13 25573915 25574267 -94170631 - MLT1A2 LTR MaLR -1 373 1 211 27 27 27 chr13 25574827 25574864 -94170034 + (CTGGGG)n Simple_repeat Simple_repeat 1 37 0 495 303 20 13 chr13 25577597 25577749 -94167149 + L2 LINE L2 3161 3313 0 514 93 0 0 chr13 25578378 25578453 -94166445 - MADE1 DNA Mariner 0 80 6 364 141 31 0 chr13 25578494 25578558 -94166340 - MER5B DNA MER1_type 0 178 113 2428 74 0 7 chr13 25578558 25578854 -94166044 + AluY SINE Alu 1 294 -17 2178 122 3 3 chr13 25578990 25579286 -94165612 - AluSx SINE Alu -16 296 1 2170 114 74 10 chr13 25579441 25579845 -94165053 + L1MB3 LINE L1 5752 6181 -2 856 165 18 18 chr13 25580624 25580788 -94164110 + FRAM SINE Alu 2 165 -1 2364 109 0 0 chr13 25581006 25581308 -94163590 + AluSg SINE Alu 1 302 -8 2128 108 4 0 chr13 25582829 25583127 -94161771 - AluSc SINE Alu 0 299 1 21 36 0 0 chr13 25587837 25587865 -94157033 + AT_rich Low_complexity Low_complexity 1 28 0 281 261 169 8 chr13 25591063 25591193 -94153705 + MIR SINE MIR 8 158 -104 2403 194 18 6 chr13 25592025 25592520 -94152378 + L1MB3 LINE L1 5683 6183 0 342 286 11 0 chr13 25592644 25592735 -94152163 + MER91A DNA MER1_type 91 182 -14 237 352 47 16 chr13 25592804 25592932 -94151966 + L2 LINE L2 3132 3263 -9 250 244 0 39 chr13 25592932 25593010 -94151888 + GA-rich Low_complexity Low_complexity 1 75 0 183 80 0 0 chr13 25593366 25593391 -94151507 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 826 172 0 15 chr13 25593394 25593528 -94151370 - AluJo SINE Alu -178 134 3 187 200 22 0 chr13 25594895 25594940 -94149958 + MIR SINE MIR 90 135 -73 1254 248 73 38 chr13 25595335 25595713 -94149185 - L1ME3A LINE L1 -5 6165 5769 1663 159 22 57 chr13 25595713 25596028 -94148870 - AluJo SINE Alu -6 306 3 1254 248 73 38 chr13 25596028 25596071 -94148827 - L1ME3A LINE L1 -401 5769 5729 892 196 0 0 chr13 25597110 25597268 -94147630 + FAM SINE Alu 1 158 -17 372 59 0 0 chr13 25597270 25597321 -94147577 + (CA)n Simple_repeat Simple_repeat 1 51 0 625 95 0 0 chr13 25599587 25599668 -94145230 + THE1B LTR MaLR 56 136 -228 865 225 83 94 chr13 25599668 25600103 -94144795 - LTR7 LTR ERV1 0 450 21 1446 116 35 30 chr13 25600133 25600365 -94144533 + THE1B LTR MaLR 132 364 0 252 127 109 0 chr13 25600817 25600872 -94144026 - L1ME3A LINE L1 -569 5615 5555 239 114 0 0 chr13 25600872 25600907 -94143991 - AluJo SINE Alu -8 294 260 233 143 0 0 chr13 25600907 25600942 -94143956 + LTR32 LTR ERVL 15 49 -422 1200 191 17 17 chr13 25600942 25601172 -94143726 + LTR32 LTR ERVL 232 461 -10 1461 175 15 4 chr13 25601179 25601442 -94143456 - AluJo SINE Alu -46 266 1 472 175 0 0 chr13 25601442 25601522 -94143376 - L1ME3A LINE L1 -609 5565 5486 297 172 9 0 chr13 25602164 25602234 -94142664 - L1P LINE L1 -783 5363 5298 781 213 0 0 chr13 25602370 25602534 -94142364 - L1ME3A LINE L1 -844 5302 5139 1946 105 3 20 chr13 25602945 25603239 -94141659 - AluSx SINE Alu -23 289 1 1637 152 43 23 chr13 25605928 25606231 -94138667 + AluJo SINE Alu 1 309 -3 2230 88 0 3 chr13 25607518 25607815 -94137083 + AluSx SINE Alu 1 296 -16 215 182 288 0 chr13 25608286 25608352 -94136546 - MIR SINE MIR 0 262 178 260 200 0 0 chr13 25608358 25608408 -94136490 - Alu SINE Alu -2 300 251 945 143 0 0 chr13 25608432 25608565 -94136333 - FLAM_C SINE Alu 0 133 1 445 312 22 0 chr13 25608590 25608728 -94136170 - MIR SINE MIR -109 153 13 385 242 152 0 chr13 25608945 25609044 -94135854 + L2 LINE L2 3200 3313 0 1104 213 4 25 chr13 25609411 25609646 -94135252 + MLT1A1 LTR MaLR 1 230 -135 922 142 26 13 chr13 25609731 25609886 -94135012 + MLT1A1 LTR MaLR 208 364 -1 285 249 96 28 chr13 25611033 25611210 -94133688 + MER117 DNA MER1_type 3 191 -6 413 272 225 0 chr13 25611431 25611600 -94133298 + MIR SINE MIR 1 207 -55 3155 144 38 6 chr13 25611983 25612509 -94132389 - L1MC3 LINE L1 -6 7779 7237 1357 174 161 156 chr13 25612509 25612550 -94132348 - MLT1A1 LTR MaLR 0 396 357 2368 76 3 6 chr13 25612550 25612864 -94132034 + AluSp SINE Alu 1 313 0 1357 174 161 156 chr13 25612864 25613214 -94131684 - MLT1A1 LTR MaLR -39 357 3 2124 166 26 19 chr13 25613214 25613631 -94131267 - L1MC3 LINE L1 -542 7243 6824 4328 179 68 28 chr13 25613637 25614575 -94130323 - L1MD2 LINE L1 -11 6348 5373 354 238 158 30 chr13 25615336 25615538 -94129360 + MLT1J LTR MaLR 277 504 -7 2761 69 11 6 chr13 25617233 25617597 -94127301 - L1PA8 LINE L1 -2 6170 5805 258 257 148 29 chr13 25617881 25617996 -94126902 + MIR SINE MIR 26 153 -55 1319 199 61 61 chr13 25619271 25619729 -94125169 - LTR40b LTR ERVL -2 460 3 385 263 275 7 chr13 25620592 25620711 -94124187 - L2 LINE L2 0 3272 3186 2086 135 0 0 chr13 25620711 25621023 -94123875 + AluSx SINE Alu 1 312 0 385 263 275 7 chr13 25621023 25621386 -94123512 - L2 LINE L2 -86 3186 2618 233 29 29 0 chr13 25621637 25621671 -94123227 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2185 102 0 31 chr13 25621678 25622000 -94122898 + AluSq SINE Alu 1 312 -1 369 277 0 11 chr13 25622916 25623010 -94121888 - LTR67 LTR ERVL 0 557 465 857 247 112 58 chr13 25623828 25624572 -94120326 + L1MDa LINE L1 1305 2127 -4452 607 256 81 12 chr13 25624625 25625140 -94119758 + L1MDa LINE L1 2202 2724 -3816 205 172 230 23 chr13 25625141 25625228 -94119670 + L3b LINE CR1 1364 1468 -115 545 128 0 0 chr13 25625910 25626004 -94118894 + AluJ/FRAM SINE Alu 218 311 -1 661 158 8 17 chr13 25626141 25626261 -94118637 + FLAM_A SINE Alu 1 119 -14 186 133 0 0 chr13 25626261 25626291 -94118607 + (CATA)n Simple_repeat Simple_repeat 3 32 0 857 261 9 9 chr13 25626985 25627200 -94117698 - MIR SINE MIR 0 262 48 434 266 93 0 chr13 25627413 25627552 -94117346 + MIR SINE MIR 85 236 -26 1984 117 13 3 chr13 25627621 25627919 -94116979 + AluSx SINE Alu 1 301 -11 558 313 22 28 chr13 25628279 25628458 -94116440 + MER91A DNA MER1_type 1 178 -18 1792 186 67 6 chr13 25629594 25629938 -94114960 + MLT1A1 LTR MaLR 1 365 0 2515 142 32 5 chr13 25630563 25630971 -94113927 + MSTB1 LTR MaLR 1 419 -13 1145 183 15 0 chr13 25630977 25631179 -94113719 + MSTB1-int LTR MaLR 1 205 -1446 1389 194 0 22 chr13 25631182 25631460 -94113438 + AluJb SINE Alu 30 301 -11 7060 203 45 13 chr13 25631467 25632878 -94112020 + MSTB1-int LTR MaLR 195 1651 0 2665 137 16 32 chr13 25632878 25633317 -94111581 + MSTB1 LTR MaLR 1 432 0 187 184 66 92 chr13 25633408 25633484 -94111414 + L2 LINE L2 2741 2814 -500 472 161 75 46 chr13 25633894 25634002 -94110896 + MLT1J1 LTR MaLR 19 129 -321 377 295 109 13 chr13 25633983 25634139 -94110759 + MLT1J2 LTR MaLR 156 326 -124 * 870 173 13 26 chr13 25634161 25634317 -94110581 - MER70A LTR ERVL 0 472 319 1199 185 129 29 chr13 25634318 25634480 -94110418 - THE1C LTR MaLR 0 375 231 3871 97 7 9 chr13 25634480 25635028 -94109870 - L1PA8 LINE L1 -5 6167 5621 1199 185 129 29 chr13 25635028 25635206 -94109692 - THE1C LTR MaLR -144 231 1 * 1479 171 3 165 chr13 25635206 25635591 -94109307 - MER70B LTR ERVL -256 322 1 1523 159 3 64 chr13 25635635 25635783 -94109115 + AluJo SINE Alu 1 120 -192 1809 167 3 0 chr13 25635783 25636076 -94108822 + AluSx SINE Alu 1 294 -18 1523 159 3 64 chr13 25636076 25636253 -94108645 + AluJo SINE Alu 120 306 -6 237 236 14 28 chr13 25636330 25636402 -94108496 + MLT1J2 LTR MaLR 370 440 -10 2070 196 21 71 chr13 25636848 25637369 -94107529 + MLT1E2 LTR MaLR 2 496 -130 1545 331 57 19 chr13 25637378 25638152 -94106746 + HERV16 LTR ERVL 2395 3091 -1905 2153 125 0 0 chr13 25638778 25639090 -94105808 - AluSx SINE Alu 0 312 1 375 322 25 0 chr13 25640107 25640228 -94104670 - L2 LINE L2 -1 3312 3189 426 39 0 0 chr13 25640388 25640440 -94104458 + (TG)n Simple_repeat Simple_repeat 2 53 0 512 306 48 68 chr13 25640444 25640754 -94104144 + L3 LINE CR1 369 672 -905 3828 211 49 21 chr13 25640805 25641586 -94103312 + L1MB8 LINE L1 4079 5001 -1173 236 77 26 0 chr13 25641586 25641625 -94103273 + (CA)n Simple_repeat Simple_repeat 1 40 0 3828 211 49 21 chr13 25641625 25642158 -94102740 + L1MB8 LINE L1 5001 5518 -656 2912 175 15 17 chr13 25642164 25642748 -94102150 + L1MB8 LINE L1 5591 6173 -5 283 162 0 29 chr13 25642749 25642817 -94102081 + GA-rich Low_complexity Low_complexity 2 67 0 255 102 82 10 chr13 25643106 25643204 -94101694 + (CA)n Simple_repeat Simple_repeat 2 106 0 435 175 305 19 chr13 25643461 25643615 -94101283 + MER69 DNA AcHobo 2189 2386 -140 391 181 42 0 chr13 25643624 25643696 -94101202 + FLAM_A SINE Alu 52 126 -7 470 98 85 12 chr13 25643712 25643876 -94101022 + (CA)n Simple_repeat Simple_repeat 1 176 0 825 163 60 0 chr13 25643876 25644042 -94100856 + AluJo SINE Alu 127 302 -10 289 178 30 24 chr13 25644153 25644236 -94100662 + MER69 DNA AcHobo 2420 2504 -22 24 0 0 0 chr13 25645023 25645047 -94099851 + AT_rich Low_complexity Low_complexity 1 24 0 1932 109 13 35 chr13 25645047 25645235 -94099663 - L1PB1 LINE L1 0 6151 5971 2236 101 3 0 chr13 25645235 25645543 -94099355 - AluSx SINE Alu -3 309 1 1932 109 13 35 chr13 25645543 25645666 -94099232 - L1PB1 LINE L1 -180 5971 5847 990 96 0 0 chr13 25645667 25645803 -94099095 - AluJb SINE Alu -176 136 1 1880 95 57 8 chr13 25847585 25847847 -93897051 + AluSg SINE Alu 31 305 -5 1049 121 151 34 chr13 25847969 25848175 -93896723 + MER30 DNA MER1_type 1 230 0 1735 144 72 4 chr13 25848799 25849076 -93895822 - AluJo SINE Alu -16 296 1 4890 217 103 14 chr13 25849615 25849918 -93894980 + L1M4 LINE L1 3585 3860 -2286 2578 63 0 0 chr13 25849918 25850217 -93894681 + AluY SINE Alu 3 301 -10 4890 217 103 14 chr13 25850217 25850494 -93894404 + L1M4 LINE L1 3860 4111 -2035 2337 91 0 0 chr13 25850494 25850792 -93894106 + AluSx SINE Alu 1 298 -14 4890 217 103 14 chr13 25850792 25851632 -93893266 + L1M4 LINE L1 4111 5133 -1013 1052 161 50 5 chr13 25851633 25851832 -93893066 + AluJo SINE Alu 1 208 -104 2524 121 6 3 chr13 25852505 25852868 -93892030 - THE1B LTR MaLR 0 364 1 269 297 66 0 chr13 25853063 25853154 -93891744 - MIR SINE MIR -67 141 45 2433 65 7 3 chr13 25853253 25853547 -93891351 - AluY SINE Alu -16 295 1 1557 170 32 28 chr13 25853666 25853883 -93891015 - AluJb SINE Alu 0 323 103 1666 164 105 9 chr13 25853883 25854207 -93890691 - THE1A LTR MaLR 0 355 1 1557 170 32 28 chr13 25854207 25854311 -93890587 - AluJb SINE Alu -220 103 1 2343 69 14 0 chr13 25854487 25854775 -93890123 - AluY SINE Alu -19 292 1 296 113 132 0 chr13 25854775 25854828 -93890070 - MER68 LTR ERV1 -501 61 2 371 203 49 74 chr13 25854829 25854992 -93889906 - L1MC4 LINE L1 -646 7396 7238 * 1222 257 115 6 chr13 25854974 25855551 -93889347 - L1MC4a LINE L1 -791 7060 6467 375 113 0 0 chr13 25855738 25855800 -93889098 + (CA)n Simple_repeat Simple_repeat 1 62 0 497 143 0 11 chr13 25856612 25856703 -93888195 + (TA)n Simple_repeat Simple_repeat 1 90 0 1519 169 10 40 chr13 25856704 25857005 -93887893 - AluJo SINE Alu -17 295 4 2360 100 0 25 chr13 25857411 25857731 -93887167 + AluSx SINE Alu 1 312 0 3002 189 52 9 chr13 25857732 25858373 -93886525 + L1 LINE L1 4369 5036 -1110 1289 101 37 5 chr13 25858374 25858563 -93886335 - AluSc SINE Alu -10 299 105 657 111 0 0 chr13 25858567 25858657 -93886241 - LTR12 LTR ERV1 0 714 625 349 128 75 85 chr13 25858664 25858758 -93886140 - LTR30 LTR ERV1 -98 624 378 1166 130 149 7 chr13 25858785 25859000 -93885898 - LTR12 LTR ERV1 -417 2021 60 289 122 0 0 chr13 25858977 25859018 -93885880 - LTR12 LTR ERV1 -524 190 150 * 1434 224 151 7 chr13 25859167 25859577 -93885321 - MLT2B1 LTR ERVL -50 470 2 365 250 24 32 chr13 25860210 25860334 -93884564 + MIR SINE MIR 69 191 -71 577 226 17 0 chr13 25861855 25861970 -93882928 - MER94 DNA DNA -1 133 17 218 192 39 0 chr13 25862457 25862509 -93882389 + L2 LINE L2 3217 3270 -2 312 197 197 0 chr13 25863194 25863311 -93881587 + L1M4 LINE L1 2416 2555 -3591 686 276 80 46 chr13 25863320 25863637 -93881261 + L1ME3A LINE L1 5566 5899 -271 2404 109 0 0 chr13 25863637 25863949 -93880949 + AluSx SINE Alu 1 312 0 686 276 80 46 chr13 25863949 25864004 -93880894 + L1ME3A LINE L1 5899 5951 -219 1092 123 0 59 chr13 25865424 25865635 -93879263 + AluY SINE Alu 136 335 0 433 308 114 26 chr13 25866183 25866812 -93878086 + L2 LINE L2 2637 3313 0 26 50 0 0 chr13 25866817 25866857 -93878041 + AT_rich Low_complexity Low_complexity 1 40 0 2171 102 46 0 chr13 25867008 25867293 -93877605 - AluSx SINE Alu -6 306 9 2149 96 46 0 chr13 25867312 25867594 -93877304 - AluSx SINE Alu -1 311 17 2502 91 0 0 chr13 25867637 25867945 -93876953 - AluSg SINE Alu -2 308 1 300 169 0 108 chr13 25868558 25868753 -93876145 + GA-rich Low_complexity Low_complexity 3 176 0 2042 105 0 0 chr13 25868852 25869119 -93875779 - AluSx SINE Alu -45 267 1 423 254 65 30 chr13 25870739 25870908 -93873990 + MER5B DNA MER1_type 1 175 -3 428 284 60 56 chr13 25871003 25871253 -93873645 - MIR SINE MIR -2 260 10 200 318 165 0 chr13 25872829 25872914 -93871984 + MIR SINE MIR 48 146 -116 211 311 22 0 chr13 25873004 25873094 -93871804 + MIR SINE MIR 171 262 0 218 291 0 0 chr13 25873266 25873321 -93871577 + L2 LINE L2 3210 3264 -8 2127 138 0 0 chr13 25873646 25873936 -93870962 + AluSx SINE Alu 1 290 -22 1310 241 90 40 chr13 25874259 25874703 -93870195 + MLT1C LTR MaLR 2 467 0 665 234 50 98 chr13 25875094 25875376 -93869522 + L1M4c LINE L1 1397 1691 -4692 1775 168 3 3 chr13 25875376 25875667 -93869231 + AluJo SINE Alu 5 295 -17 665 234 50 98 chr13 25875667 25875897 -93869001 + L1M4c LINE L1 1691 2156 -4227 1624 89 0 0 chr13 25875921 25876123 -93868775 + AluSg SINE Alu 1 202 -108 2124 128 59 64 chr13 25876265 25876672 -93868226 + MSTC LTR MaLR 18 422 -6 209 327 18 26 chr13 25877886 25877999 -93866899 - L2 LINE L2 -244 3028 2917 223 324 54 61 chr13 25878296 25878592 -93866306 - L2 LINE L2 -130 3142 2849 184 323 82 41 chr13 25879403 25879623 -93865275 + L2 LINE L2 2560 2788 -526 210 162 0 0 chr13 25880040 25880077 -93864821 + L2 LINE L2 3277 3313 0 * 256 286 281 15 chr13 25880075 25880271 -93864627 - MIR SINE MIR -1 261 14 223 301 75 0 chr13 25880574 25880667 -93864231 - MIR SINE MIR -102 160 61 1267 180 9 14 chr13 25880722 25880939 -93863959 + AluJo SINE Alu 1 216 -96 285 287 44 94 chr13 25882100 25882281 -93862617 - L2 LINE L2 -1 3312 3141 206 164 200 0 chr13 25882276 25882331 -93862567 - MIR SINE MIR -127 135 70 * 36 40 0 0 chr13 25884300 25884350 -93860548 + AT_rich Low_complexity Low_complexity 1 50 0 1831 80 0 0 chr13 25884717 25884943 -93859955 - AluSp SINE Alu -3 310 85 295 327 90 13 chr13 25885800 25885956 -93858942 + MIR3 SINE MIR 2 169 -39 29 0 0 0 chr13 25886057 25886086 -93858812 + AT_rich Low_complexity Low_complexity 1 29 0 306 160 267 0 chr13 25886378 25886453 -93858445 + MIR SINE MIR 83 177 -85 263 81 0 0 chr13 25886860 25886897 -93858001 + MADE1 DNA Mariner 44 80 0 646 171 73 0 chr13 25888222 25888345 -93856553 - FLAM_C SINE Alu 0 133 2 1241 172 66 46 chr13 25890099 25890401 -93854497 - AluJb SINE Alu -4 308 1 317 232 0 0 chr13 25890790 25890859 -93854039 - L1P LINE L1 -4465 1681 1613 1675 141 49 42 chr13 25892181 25892487 -93852411 - AluJb SINE Alu -4 308 1 1138 146 44 0 chr13 25893098 25893304 -93851594 + L1PA11 LINE L1 5960 6174 0 321 78 118 0 chr13 25893960 25894011 -93850887 - L1MA9 LINE L1 0 6312 6256 343 109 0 0 chr13 25895343 25895389 -93849509 - MLT1C LTR MaLR -2 465 420 1896 149 0 0 chr13 25895391 25895673 -93849225 + MER7A DNA MER2_type 67 346 0 1686 149 113 69 chr13 25895674 25896063 -93848835 - MLT1C LTR MaLR -56 411 6 2292 103 0 13 chr13 25897238 25897549 -93847349 - AluSx SINE Alu -1 311 5 543 226 62 6 chr13 25897685 25897862 -93847036 - L1MC5 LINE L1 -476 7485 7299 293 161 18 0 chr13 25898028 25898084 -93846814 - L1MC5 LINE L1 -733 7228 7172 319 109 0 0 chr13 25898502 25898548 -93846350 - MLT1C LTR MaLR -2 465 420 1550 184 0 0 chr13 25898550 25898832 -93846066 + MER7A DNA MER2_type 67 346 0 1353 167 113 72 chr13 25898834 25899223 -93845675 - MLT1C LTR MaLR -57 410 6 1094 217 91 69 chr13 25900902 25900992 -93843906 - MLT1D LTR MaLR 0 505 418 2502 74 0 7 chr13 25900992 25901302 -93843596 + AluSc SINE Alu 2 309 0 1094 217 91 69 chr13 25901302 25901705 -93843193 - MLT1D LTR MaLR -87 418 1 1938 94 98 4 chr13 25903054 25903320 -93841578 - AluSx SINE Alu -21 291 1 2519 71 0 0 chr13 25903397 25903706 -93841192 - AluY SINE Alu -1 310 2 3276 195 84 83 chr13 25903717 25904567 -93840331 - L1MA10 LINE L1 0 6334 5486 1417 182 43 17 chr13 25904567 25904869 -93840029 - AluJo SINE Alu -2 310 1 3276 195 84 83 chr13 25904869 25905084 -93839814 - L1MA10 LINE L1 -848 5486 5273 1663 134 0 8 chr13 25905084 25905322 -93839576 - AluSx SINE Alu -76 236 1 3276 195 84 83 chr13 25905322 25905690 -93839208 - L1MA10 LINE L1 -1061 5273 4907 261 196 0 0 chr13 25905690 25905736 -93839162 - FRAM SINE Alu -63 103 58 3276 195 84 83 chr13 25905736 25906127 -93838771 - L1MA10 LINE L1 -1427 4907 4315 1503 86 27 0 chr13 25906132 25906354 -93838544 - L1MA5 LINE L1 -2 6298 6071 1361 197 44 7 chr13 25906368 25906662 -93838236 + MER1B DNA MER1_type 35 339 0 1239 237 50 11 chr13 25906841 25907200 -93837698 - L1M4 LINE L1 -1815 4567 4195 1584 209 10 3 chr13 25907215 25907507 -93837391 - AluSx SINE Alu -18 294 1 211 68 45 0 chr13 25907708 25907734 -93837164 + (TA)n Simple_repeat Simple_repeat 1 31 -15 2155 82 35 0 chr13 25907734 25908016 -93836882 - AluSg SINE Alu -18 292 1 211 68 45 0 chr13 25908016 25908033 -93836865 + (TA)n Simple_repeat Simple_repeat 31 46 0 558 230 50 98 chr13 25908137 25908270 -93836628 - L1M4 LINE L1 -4227 2156 2018 1862 155 3 3 chr13 25908270 25908560 -93836338 - AluJo SINE Alu -18 294 5 558 230 50 98 chr13 25908560 25908842 -93836056 - L1M4 LINE L1 -4365 2018 1397 1288 234 90 40 chr13 25909233 25909677 -93835221 - MLT1C LTR MaLR 0 467 2 2073 122 4 0 chr13 25910000 25910278 -93834620 - AluSq SINE Alu -22 291 13 1520 176 0 58 chr13 25911337 25911632 -93833266 - AluJb SINE Alu -34 278 1 21 36 0 0 chr13 25911777 25911805 -93833093 + AT_rich Low_complexity Low_complexity 1 28 0 1624 167 17 27 chr13 25911889 25912183 -93832715 - AluJo SINE Alu -10 302 12 1788 156 17 7 chr13 25912198 25912486 -93832412 - AluJb SINE Alu -19 293 3 489 266 85 19 chr13 25912535 25913083 -93831815 - L1MC5 LINE L1 -537 7495 7004 298 195 17 93 chr13 25913159 25913277 -93831621 - L1MC4 LINE L1 -989 7053 6945 2395 87 0 0 chr13 25913297 25913597 -93831301 - AluSc SINE Alu -9 300 1 377 182 15 83 chr13 25913622 25913754 -93831144 - L1MC4 LINE L1 -989 7053 6931 * 717 232 87 5 chr13 25913746 25914211 -93830687 - L1MC4 LINE L1 -6 8036 7390 189 74 0 0 chr13 25914257 25914284 -93830614 + (TG)n Simple_repeat Simple_repeat 2 28 0 1140 127 0 40 chr13 25914284 25914457 -93830441 - AluSg/x SINE Alu -26 286 121 293 143 20 0 chr13 25914459 25914508 -93830390 - Alu SINE Alu -252 50 1 787 159 15 0 chr13 25914516 25914648 -93830250 - Tigger4(Zombi) DNA MER2_type -2596 135 2 1338 221 118 17 chr13 25914668 25915075 -93829823 - L1MC4 LINE L1 -893 7149 6702 2266 113 7 0 chr13 25915095 25915397 -93829501 + AluSx SINE Alu 1 304 -8 303 282 137 0 chr13 25915769 25915886 -93829012 + MIR SINE MIR 118 250 -12 332 246 32 40 chr13 25916060 25916186 -93828712 - L1ME3A LINE L1 -50 6120 5996 262 252 16 118 chr13 25916500 25916627 -93828271 + L2 LINE L2 3155 3268 -4 2090 119 0 0 chr13 25916782 25917077 -93827821 - AluSx SINE Alu -17 295 1 414 252 101 0 chr13 25917423 25917542 -93827356 + MER94 DNA DNA 3 133 -1 254 167 21 0 chr13 25918015 25918063 -93826835 - L1M4c LINE L1 -6207 177 129 534 160 10 0 chr13 25918063 25918163 -93826735 + LTR47A LTR ERVL 329 429 -23 1668 269 70 29 chr13 25918214 25918768 -93826130 - MLT1E LTR MaLR -16 577 1 298 241 62 56 chr13 25919404 25919599 -93825299 - L1MC5 LINE L1 -36 7925 7730 180 0 0 0 chr13 25919883 25919903 -93824995 + (TATG)n Simple_repeat Simple_repeat 2 21 0 2057 91 25 7 chr13 25919906 25920191 -93824707 - AluSq SINE Alu -23 290 1 2072 129 0 7 chr13 25920686 25920981 -93823917 - AluSx SINE Alu -19 293 1 21 57 0 0 chr13 25921033 25921068 -93823830 + AT_rich Low_complexity Low_complexity 1 35 0 1406 176 65 11 chr13 25921131 25921409 -93823489 - AluJb SINE Alu -19 293 1 1685 155 0 41 chr13 25922271 25922562 -93822336 - AluJo SINE Alu -33 279 1 1615 77 14 9 chr13 25922764 25922984 -93821914 - AluY SINE Alu -9 302 82 207 219 0 0 chr13 25923942 25923983 -93820915 + T-rich Low_complexity Low_complexity 1 41 0 261 264 101 16 chr13 25924203 25924332 -93820566 + HAL1b LINE L1 742 881 -467 324 289 22 52 chr13 25924432 25924567 -93820331 + HAL1b LINE L1 808 938 -410 254 249 119 50 chr13 25924981 25925129 -93819769 - MIR SINE MIR -45 217 64 1052 212 35 64 chr13 25925736 25926109 -93818789 - L1M4 LINE L1 -5359 1183 822 347 326 149 18 chr13 25926221 25926503 -93818395 - L1M4 LINE L1 -6036 610 292 1347 159 151 0 chr13 25926725 25926970 -93817928 - AluJo SINE Alu -30 282 1 201 274 151 28 chr13 25929511 25929617 -93815281 - MIR SINE MIR -32 230 112 4357 154 45 23 chr13 25929991 25930922 -93813976 - L1P LINE L1 -5184 962 11 21 57 0 0 chr13 25931057 25931092 -93813806 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 25931171 25931192 -93813706 + AT_rich Low_complexity Low_complexity 1 21 0 251 257 169 27 chr13 25931218 25931366 -93813532 + MER112 DNA MER1_type 60 228 -32 2489 121 6 3 chr13 25932557 25932920 -93811978 - THE1B LTR MaLR 0 364 1 294 308 66 0 chr13 25933115 25933206 -93811692 - MIR SINE MIR -67 141 45 2406 64 7 3 chr13 25933305 25933600 -93811298 - AluY SINE Alu -15 296 1 1539 170 32 28 chr13 25933719 25933936 -93810962 - AluJb SINE Alu 0 323 103 1663 154 105 9 chr13 25933936 25934260 -93810638 - THE1A LTR MaLR 0 355 1 1539 170 32 28 chr13 25934260 25934364 -93810534 - AluJb SINE Alu -220 103 1 329 275 62 115 chr13 25934409 25934540 -93810358 - L1MEd LINE L1 -5205 914 778 2414 73 0 0 chr13 25934540 25934829 -93810069 - AluY SINE Alu -19 292 4 329 275 62 115 chr13 25934829 25935392 -93809506 - L1MEd LINE L1 -5341 778 257 22 0 0 0 chr13 25935537 25935559 -93809339 + AT_rich Low_complexity Low_complexity 1 22 0 1560 139 124 15 chr13 25935774 25936040 -93808858 - AluSg SINE Alu -15 295 1 182 238 24 0 chr13 25936773 25936815 -93808083 - MIR3 SINE MIR -13 195 153 402 282 96 19 chr13 25937290 25937446 -93807452 - MIR SINE MIR -7 255 88 992 209 76 166 chr13 25938272 25938506 -93806392 + L1ME3 LINE L1 5459 5712 -450 2039 114 31 0 chr13 25938506 25938795 -93806103 + AluSp SINE Alu 1 298 -15 992 209 76 166 chr13 25938795 25939254 -93805644 + L1ME3 LINE L1 5712 6090 -72 250 232 98 24 chr13 25939265 25939347 -93805551 + L1ME3 LINE L1 6069 6156 -6 2488 59 7 0 chr13 25939390 25939693 -93805205 - AluSp SINE Alu -8 305 1 26 50 0 0 chr13 25940733 25940773 -93804125 + AT_rich Low_complexity Low_complexity 1 40 0 839 262 85 52 chr13 25942698 25943122 -93801776 - L1ME3 LINE L1 -81 6081 5644 2124 75 4 0 chr13 25943170 25943437 -93801461 - AluSp SINE Alu -45 268 1 26 50 0 0 chr13 25944477 25944517 -93800381 + AT_rich Low_complexity Low_complexity 1 40 0 355 301 104 26 chr13 25946146 25946339 -93798559 - MIR SINE MIR -48 214 7 2522 50 0 0 chr13 25946528 25946827 -93798071 + AluY SINE Alu 1 299 -12 37 39 0 0 chr13 25947384 25947435 -93797463 + AT_rich Low_complexity Low_complexity 1 51 0 2432 80 0 0 chr13 25948157 25948457 -93796441 + AluSx SINE Alu 1 300 -12 231 245 88 29 chr13 25948755 25948857 -93796041 + L2 LINE L2 2932 3039 -233 189 368 0 0 chr13 25949004 25949061 -93795837 + L2 LINE L2 3234 3290 -23 31 26 0 0 chr13 25950454 25950492 -93794406 + AT_rich Low_complexity Low_complexity 1 38 0 900 201 165 25 chr13 25950547 25950826 -93794072 - MER2 DNA MER2_type 0 345 28 1242 210 205 7 chr13 25950965 25951540 -93793358 + L1M4 LINE L1 2271 2959 -3187 262 297 106 59 chr13 25951547 25951803 -93793095 - LTR16A1 LTR ERVL -2 455 188 11684 111 38 57 chr13 25953080 25953419 -93791479 - Tigger1 DNA MER2_type 0 2418 2074 730 33 0 0 chr13 25953419 25953509 -93791389 - AluY SINE Alu -8 303 214 11684 111 38 57 chr13 25953509 25955240 -93789658 - Tigger1 DNA MER2_type -344 2074 300 573 149 0 0 chr13 25955251 25955345 -93789553 - AluSp/q SINE Alu -19 294 201 1097 182 22 26 chr13 25955445 25955714 -93789184 - Tigger1 DNA MER2_type -2133 285 18 2286 89 3 3 chr13 25956180 25956471 -93788427 - AluSx SINE Alu -21 291 1 1664 254 50 22 chr13 25956473 25956941 -93787957 - L1MDa LINE L1 -3172 3368 2914 188 33 0 33 chr13 25956941 25956971 -93787927 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1463 168 4 0 chr13 25956977 25957209 -93787689 - AluJo SINE Alu -30 282 50 1664 254 50 22 chr13 25957209 25957419 -93787479 - L1MDa LINE L1 -3630 2910 2664 1823 253 64 16 chr13 25957433 25958196 -93786702 - L1MDa LINE L1 -3983 2557 1758 901 134 23 12 chr13 25958475 25958646 -93786252 + Tigger1 DNA MER2_type 300 472 -1946 180 0 0 0 chr13 25958648 25958668 -93786230 + (CA)n Simple_repeat Simple_repeat 1 20 0 2252 90 24 0 chr13 25958677 25958967 -93785931 + AluSc SINE Alu 3 299 -10 2742 189 52 9 chr13 25958968 25959609 -93785289 - L1 LINE L1 -1110 5036 4369 2370 97 0 25 chr13 25959610 25959930 -93784968 - AluSx SINE Alu 0 312 1 1621 164 10 39 chr13 25960336 25960648 -93784250 + AluJo SINE Alu 4 306 -6 383 173 12 0 chr13 25960648 25960729 -93784169 + (TA)n Simple_repeat Simple_repeat 1 82 0 243 0 0 0 chr13 25960732 25960759 -93784139 + (CA)n Simple_repeat Simple_repeat 2 28 0 375 113 0 0 chr13 25961549 25961611 -93783287 + (TG)n Simple_repeat Simple_repeat 1 62 0 288 0 0 0 chr13 25961701 25961733 -93783165 + (TG)n Simple_repeat Simple_repeat 1 32 0 1487 249 116 2 chr13 25961808 25962345 -93782553 + L1MC4 LINE L1 6463 7060 -982 1465 247 87 35 chr13 25962371 25962535 -93782363 + L1MC4 LINE L1 7238 7392 -650 2077 186 118 33 chr13 25962535 25962588 -93782310 + MER68 LTR ERV1 2 49 -513 2270 70 17 7 chr13 25962588 25962889 -93782009 + AluY SINE Alu 1 304 -7 2077 186 118 33 chr13 25962889 25963352 -93781546 + MER68 LTR ERV1 49 562 0 1465 247 87 35 chr13 25963352 25963819 -93781079 + L1MC4 LINE L1 7392 7902 -140 257 130 56 0 chr13 25963822 25963876 -93781022 + L1MC4 LINE L1 7986 8042 0 411 319 141 4 chr13 25966752 25966993 -93777905 - L2 LINE L2 -1026 2288 2015 3440 188 22 39 chr13 25967295 25968075 -93776823 + L1MC2 LINE L1 4409 5151 -1193 2103 95 42 0 chr13 25968075 25968358 -93776540 + AluSp SINE Alu 1 295 -18 3440 188 22 39 chr13 25968358 25969152 -93775746 + L1MC2 LINE L1 5151 5957 -387 979 228 98 70 chr13 25969218 25969382 -93775516 + L1MC4 LINE L1 7177 7335 -707 1629 192 10 3 chr13 25969382 25969674 -93775224 + AluJo SINE Alu 1 294 -18 979 228 98 70 chr13 25969674 25969991 -93774907 + L1MC4 LINE L1 7335 7671 -371 1638 167 0 26 chr13 25970026 25970295 -93774603 + AluJo SINE Alu 1 262 -50 432 313 24 24 chr13 25971375 25971539 -93773359 - MER5B DNA MER1_type -22 167 4 208 239 43 0 chr13 25971549 25971595 -93773303 + L3 LINE CR1 1528 1575 -2 441 230 186 6 chr13 25971709 25971870 -93773028 - MIR SINE MIR -49 213 24 2130 117 10 3 chr13 25972345 25972645 -93772253 + AluSq SINE Alu 1 302 -11 518 301 11 27 chr13 25972719 25972902 -93771996 + MIR SINE MIR 21 200 -62 1057 111 26 214 chr13 25972962 25973145 -93771753 - Tigger4(Zombi) DNA MER2_type 0 2731 2572 408 52 0 0 chr13 25973145 25973203 -93771695 - AluSp/q SINE Alu -12 301 244 1057 111 26 214 chr13 25973203 25973303 -93771595 - Tigger4(Zombi) DNA MER2_type -159 2572 2455 376 315 151 21 chr13 25973510 25974079 -93770819 + L1MC4a LINE L1 5255 5897 -1911 957 118 0 0 chr13 25974112 25974239 -93770659 + AluSq/x SINE Alu 1 127 -186 497 148 0 12 chr13 25974516 25974597 -93770301 - FLAM_A SINE Alu -14 128 49 21 0 0 0 chr13 25976490 25976511 -93768387 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr13 25976599 25976623 -93768275 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 620 234 8 8 chr13 25976623 25976747 -93768151 - L2 LINE L2 -13 3259 3136 186 347 160 0 chr13 25977079 25977154 -93767744 + L2 LINE L2 3196 3282 -31 288 0 0 0 chr13 25977172 25977204 -93767694 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 506 291 243 8 chr13 25977476 25977908 -93766990 + L2 LINE L2 2597 3129 -184 228 250 262 0 chr13 25977937 25978021 -93766877 + L2 LINE L2 3136 3241 -31 207 0 0 0 chr13 25978768 25978791 -93766107 + (TAA)n Simple_repeat Simple_repeat 2 24 0 809 138 39 15 chr13 25978791 25978921 -93765977 + FLAM_C SINE Alu 1 133 0 189 74 0 0 chr13 25978922 25978949 -93765949 + (GA)n Simple_repeat Simple_repeat 2 28 0 1818 170 14 3 chr13 25979202 25979491 -93765407 - AluJo SINE Alu -20 292 1 419 252 123 22 chr13 25980128 25980303 -93764595 + MIR SINE MIR 3 191 -71 238 339 91 25 chr13 25980423 25980544 -93764354 + MIR SINE MIR 83 211 -51 235 348 143 27 chr13 25980714 25980826 -93764072 + L2 LINE L2 3132 3256 -16 244 241 9 45 chr13 25981711 25981823 -93763075 + L1MC4a LINE L1 5794 5901 -1907 21 0 0 0 chr13 25981860 25981881 -93763017 + AT_rich Low_complexity Low_complexity 1 21 0 304 370 123 24 chr13 25982013 25982203 -93762695 + L1MC4a LINE L1 6179 6349 -1459 2259 136 0 0 chr13 25982203 25982511 -93762387 + AluSx SINE Alu 1 308 -4 304 370 123 24 chr13 25982511 25982701 -93762197 + L1MC4a LINE L1 6349 6597 -1211 431 275 38 7 chr13 25982702 25982892 -93762006 + L1MC5 LINE L1 6660 6788 -1173 6872 31 0 0 chr13 25982897 25983707 -93761191 + L1PA3 LINE L1 5346 6155 0 1695 153 69 4 chr13 25983835 25984109 -93760789 + AluSx SINE Alu 1 292 -20 540 216 92 133 chr13 25984188 25984796 -93760102 + L1MC5 LINE L1 7014 7573 -388 2142 79 24 10 chr13 25984796 25985087 -93759811 + AluSg SINE Alu 1 295 -15 540 216 92 133 chr13 25985087 25985395 -93759503 + L1MC5 LINE L1 7573 7892 -69 187 279 93 12 chr13 25985673 25985759 -93759139 - MIR3 SINE MIR -54 154 62 598 231 112 24 chr13 25986928 25987179 -93757719 - Charlie7 DNA MER1_type -230 2382 2110 677 279 88 0 chr13 25987222 25987426 -93757472 + MIR SINE MIR 6 227 -35 1538 163 27 27 chr13 25987447 25987747 -93757151 - AluJo SINE Alu -12 300 1 232 253 267 9 chr13 25987771 25987996 -93756902 - Charlie7 DNA MER1_type -2239 373 91 1115 133 8 113 chr13 25988104 25988386 -93756512 + AluJo SINE Alu 86 312 0 1027 163 17 22 chr13 25989850 25990028 -93754870 + AluJo SINE Alu 82 258 -54 2472 70 3 0 chr13 25991098 25991400 -93753498 + AluY SINE Alu 1 303 -8 1447 140 42 114 chr13 25991700 25992058 -93752840 + Tigger3(Golem) DNA MER2_type 2 3014 -15 324 306 142 19 chr13 25992392 25992653 -93752245 + L1ME3A LINE L1 5592 5884 -286 2039 142 10 0 chr13 25994564 25994860 -93750038 + AluSx SINE Alu 1 299 -13 1549 170 3 47 chr13 25994870 25995170 -93749728 + AluJb SINE Alu 1 287 -25 1896 118 21 21 chr13 25995174 25995449 -93749449 + AluSx SINE Alu 7 284 -28 180 0 0 0 chr13 25995449 25995469 -93749429 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 1896 118 21 21 chr13 25995469 25995482 -93749416 + AluSx SINE Alu 283 295 -17 597 284 97 23 chr13 25996212 25996388 -93748510 - MIR SINE MIR -71 191 3 234 204 0 0 chr13 25996500 25996544 -93748354 + MIR SINE MIR 110 153 -109 2477 58 0 13 chr13 25996645 25996956 -93747942 + AluY SINE Alu 1 307 -4 311 318 164 25 chr13 25997004 25997205 -93747693 - MIR SINE MIR -13 249 21 264 167 0 0 chr13 25997356 25997404 -93747494 + T-rich Low_complexity Low_complexity 1 48 0 771 58 10 19 chr13 25997419 25997522 -93747376 - AluSg/x SINE Alu -144 168 67 2213 97 7 3 chr13 25998436 25998725 -93746173 + AluSg SINE Alu 1 290 -20 2031 153 0 13 chr13 25999792 26000099 -93744799 - AluJb SINE Alu -9 303 1 190 211 88 0 chr13 26000821 26000878 -93744020 + MIR SINE MIR 122 183 -79 661 198 0 0 chr13 26000943 26001064 -93743834 + FLAM_A SINE Alu 20 140 -2 2384 103 0 3 chr13 26001923 26002235 -93742663 - AluSx SINE Alu -1 311 1 276 292 80 0 chr13 26002239 26002352 -93742546 + MIR SINE MIR 84 205 -57 2268 154 19 58 chr13 26002483 26002886 -93742012 + L1MB3 LINE L1 5712 6096 -87 2366 94 3 0 chr13 26002886 26003184 -93741714 + AluSp SINE Alu 1 299 -14 2268 154 19 58 chr13 26003184 26003246 -93741652 + L1MB3 LINE L1 6096 6159 -24 1448 157 4 4 chr13 26003400 26003636 -93741262 - MER46A DNA MER2_type 0 236 1 277 141 110 17 chr13 26003761 26003845 -93741053 + L1ME4a LINE L1 5730 5820 -513 1793 143 38 3 chr13 26003854 26004147 -93740751 + AluJb SINE Alu 1 303 -9 308 306 48 8 chr13 26004281 26004405 -93740493 + L1ME4a LINE L1 5992 6120 -1 3012 171 38 77 chr13 26004949 26005003 -93739895 + L1MB4 LINE L1 5417 5472 -708 189 0 0 0 chr13 26005003 26005024 -93739874 + (TA)n Simple_repeat Simple_repeat 2 22 0 3012 171 38 77 chr13 26005024 26005394 -93739504 + L1MB4 LINE L1 5472 5798 -382 586 197 128 0 chr13 26005394 26005511 -93739387 + FLAM_A SINE Alu 1 132 -1 3012 171 38 77 chr13 26005511 26005880 -93739018 + L1MB4 LINE L1 5798 6180 0 499 197 47 39 chr13 26006924 26007051 -93737847 - MER94 DNA DNA -1 133 6 192 294 29 0 chr13 26007068 26007136 -93737762 + L2 LINE L2 2977 3046 -226 2025 144 7 0 chr13 26007336 26007634 -93737264 + AluSx SINE Alu 1 300 -12 2319 131 0 0 chr13 26007652 26007964 -93736934 + AluSx SINE Alu 1 312 0 299 224 165 12 chr13 26007969 26008054 -93736844 - L2 LINE L2 -34 3279 3182 1099 175 15 5 chr13 26008239 26008439 -93736459 + AluJo SINE Alu 1 202 -110 21 0 0 0 chr13 26008588 26008609 -93736289 + AT_rich Low_complexity Low_complexity 1 21 0 2082 114 0 72 chr13 26008618 26008772 -93736126 + AluSx SINE Alu 1 120 -192 1761 101 136 19 chr13 26008772 26009030 -93735868 + AluSg1 SINE Alu 1 288 -21 2082 114 0 72 chr13 26009030 26009208 -93735690 + AluSx SINE Alu 120 309 -3 209 224 0 20 chr13 26009751 26009800 -93735098 + T-rich Low_complexity Low_complexity 3 50 0 428 191 27 82 chr13 26009886 26009931 -93734967 - L1ME2 LINE L1 -16 6148 6102 2169 132 3 6 chr13 26009931 26010242 -93734656 + AluSx SINE Alu 1 310 -2 1932 172 3 0 chr13 26010242 26010545 -93734353 + AluSx SINE Alu 1 304 -8 428 191 27 82 chr13 26010545 26010645 -93734253 - L1ME2 LINE L1 -60 6104 6010 * 547 246 112 17 chr13 26010636 26010868 -93734030 - L1MC5 LINE L1 -103 7858 7605 2295 114 0 10 chr13 26011006 26011314 -93733584 - AluSx SINE Alu -7 305 1 366 306 9 0 chr13 26011521 26011632 -93733266 - L2 LINE L2 -3 3269 3158 819 176 7 0 chr13 26011813 26011955 -93732943 + FLAM_C SINE Alu 1 143 0 429 184 132 15 chr13 26012356 26012492 -93732406 - L1ME4a LINE L1 -15 6106 5955 2308 81 0 3 chr13 26012889 26013203 -93731695 - AluY SINE Alu 0 313 1 2187 122 3 0 chr13 26013203 26013498 -93731400 - AluSx SINE Alu -16 296 1 661 308 53 3 chr13 26013510 26013828 -93731070 - L1ME4a LINE L1 -304 5817 5484 586 260 19 0 chr13 26013856 26014010 -93730888 + L1M4 LINE L1 3968 4124 -2022 2316 101 3 0 chr13 26014167 26014473 -93730425 - AluSc SINE Alu -2 307 1 845 152 8 0 chr13 26015187 26015319 -93729579 - AluSq/x SINE Alu -179 133 1 288 0 0 0 chr13 26015375 26015407 -93729491 + (TA)n Simple_repeat Simple_repeat 2 33 0 1705 172 3 36 chr13 26015407 26015600 -93729298 - AluJb SINE Alu -14 298 117 2335 92 60 17 chr13 26015600 26015949 -93728949 + THE1B LTR MaLR 1 364 0 1705 172 3 36 chr13 26015949 26016063 -93728835 - AluJb SINE Alu -195 117 1 1738 128 15 107 chr13 26016453 26016789 -93728109 + AluJb SINE Alu 1 305 -7 652 248 72 36 chr13 26017076 26017298 -93727600 + MIR SINE MIR 1 230 -32 1108 245 114 63 chr13 26017499 26017752 -93727146 - MLT1J LTR MaLR -37 474 189 1610 192 0 10 chr13 26017752 26018049 -93726849 + AluJo SINE Alu 12 305 -7 1108 245 114 63 chr13 26018049 26018224 -93726674 - MLT1J LTR MaLR -322 189 24 370 303 46 17 chr13 26018468 26018643 -93726255 + L3b LINE CR1 1103 1282 -301 1588 141 0 27 chr13 26019808 26020064 -93724834 - AluJb SINE Alu 0 312 64 1820 145 0 17 chr13 26020070 26020359 -93724539 + AluJo SINE Alu 15 298 -14 1908 129 43 17 chr13 26020410 26020712 -93724186 - AluSx SINE Alu -2 310 1 1147 293 107 30 chr13 26020713 26021508 -93723390 - HAL1 LINE L1 -639 1868 1013 1351 174 125 21 chr13 26021674 26021955 -93722943 + AluSg SINE Alu 1 310 0 2382 188 66 19 chr13 26021964 26022005 -93722893 + MLT2B3 LTR ERVL 13 51 -503 2162 112 7 7 chr13 26022005 26022310 -93722588 + AluSx SINE Alu 1 305 -7 2382 188 66 19 chr13 26022310 26022753 -93722145 + MLT2B3 LTR ERVL 51 520 -34 300 23 116 0 chr13 26022795 26022838 -93722060 + MLT2B3 LTR ERVL 473 520 0 1674 255 91 68 chr13 26022915 26023323 -93721575 + ERVL LTR ERVL 2535 2967 -2797 1915 143 7 16 chr13 26023323 26023630 -93721268 + AluJo SINE Alu 1 304 -8 1674 255 91 68 chr13 26023630 26023924 -93720974 + ERVL LTR ERVL 2967 3253 -2511 1255 180 72 73 chr13 26024122 26024550 -93720348 - MER39 LTR ERV1 -23 684 196 877 318 74 27 chr13 26024611 26025124 -93719774 + ERVL LTR ERVL 3464 4000 -1654 1410 186 107 51 chr13 26025169 26025524 -93719374 - MLT1B LTR MaLR -15 375 1 2397 290 52 34 chr13 26025524 26026074 -93718824 + ERVL LTR ERVL 4070 4608 -1156 2206 104 0 0 chr13 26026074 26026352 -93718546 + AluSg SINE Alu 1 278 -32 189 0 0 0 chr13 26026352 26026373 -93718525 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 2397 290 52 34 chr13 26026373 26026774 -93718124 + ERVL LTR ERVL 4607 5040 -724 763 261 159 13 chr13 26027299 26027652 -93717246 + LTR33 LTR ERVL 3 452 -69 1081 121 0 0 chr13 26027657 26027806 -93717092 - FRAM SINE Alu -9 167 19 281 269 0 0 chr13 26027834 26027901 -93716997 + LTR33 LTR ERVL 455 521 0 626 200 51 40 chr13 26028583 26028758 -93716140 + L1MC5 LINE L1 7346 7522 -439 2132 120 0 10 chr13 26028758 26029058 -93715840 + AluSq SINE Alu 1 297 -16 348 272 87 0 chr13 26029059 26029184 -93715714 - MER5B DNA MER1_type -49 130 4 2082 104 54 0 chr13 26029596 26029874 -93715024 + AluSx SINE Alu 1 293 -19 238 342 45 0 chr13 26030027 26030138 -93714760 - L1ME LINE L1 -458 5712 5597 1332 282 42 46 chr13 26030237 26030833 -93714065 + L1MB3 LINE L1 5 600 -5942 2621 131 11 47 chr13 26030833 26031277 -93713621 + MSTC LTR MaLR 1 428 0 1332 282 42 46 chr13 26031277 26031293 -93713605 + L1MB3 LINE L1 600 615 -5927 1882 139 44 17 chr13 26031296 26031617 -93713281 + AluSg SINE Alu 1 310 0 1246 132 0 0 chr13 26031617 26031791 -93713107 + AluSg/x SINE Alu 134 307 -5 2597 203 45 32 chr13 26031795 26032134 -93712764 + L1MB3 LINE L1 1526 1859 -4787 1595 183 35 7 chr13 26032134 26032419 -93712479 - AluJb SINE Alu -19 293 1 2597 203 45 32 chr13 26032419 26032930 -93711968 + L1MB3 LINE L1 1859 2479 -4167 675 181 51 0 chr13 26032948 26033086 -93711812 + FAM SINE Alu 18 162 -23 1700 176 23 142 chr13 26033086 26033181 -93711717 + L1MB3 LINE L1 5547 5652 -1020 2145 128 3 0 chr13 26033181 26033479 -93711419 + AluSx SINE Alu 3 301 -11 1700 176 23 142 chr13 26033479 26033865 -93711033 + L1MB3 LINE L1 5652 6082 -590 2011 142 27 0 chr13 26033865 26034161 -93710737 - AluY SINE Alu -7 304 1 1699 167 7 14 chr13 26034168 26034449 -93710449 - AluJb SINE Alu -21 291 13 1700 176 23 142 chr13 26034449 26034855 -93710043 + L1MB3 LINE L1 6088 6181 -491 1509 138 36 5 chr13 26034866 26035090 -93709808 + AluJb SINE Alu 1 231 -81 840 196 115 48 chr13 26035132 26035402 -93709496 + pTR5 LTR ERV1 741 1028 -1410 5095 95 84 28 chr13 26035480 26036262 -93708636 + LTR12 LTR ERV1 1 826 0 37925 82 7 9 chr13 26036262 26037524 -93707374 + HERV9 LTR ERV1 1 1265 -7134 333 68 0 0 chr13 26037524 26037568 -93707330 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 37925 82 7 9 chr13 26037568 26041261 -93703637 + HERV9 LTR ERV1 1265 4944 -3455 2396 174 130 70 chr13 26041262 26042093 -93702805 + Harlequin LTR ERV1 840 1720 -5176 * 4945 112 6 10 chr13 26042087 26043021 -93701877 + Harlequin LTR ERV1 504 8399 0 5341 94 24 65 chr13 26043100 26043961 -93700937 + LTR12 LTR ERV1 1 826 0 494 73 0 0 chr13 26043961 26044029 -93700869 + AluJb SINE Alu 238 305 -7 5736 123 12 25 chr13 26044038 26044797 -93700101 + L1PA15 LINE L1 4395 5162 -1003 2136 99 10 31 chr13 26044797 26045091 -93699807 + AluSq SINE Alu 1 288 -25 348 43 0 0 chr13 26045093 26045139 -93699759 + (CTAA)n Simple_repeat Simple_repeat 3 48 0 5736 123 12 25 chr13 26045139 26045470 -93699428 + L1PA15 LINE L1 5163 5497 -668 2076 151 3 0 chr13 26045470 26045781 -93699117 + AluSx SINE Alu 1 312 0 5736 123 12 25 chr13 26045781 26046467 -93698431 + L1PA15 LINE L1 5497 6163 -2 1991 147 31 8 chr13 26046467 26046821 -93698077 + L1MB3 LINE L1 6314 6681 0 267 356 0 0 chr13 26046870 26046988 -93697910 + MARNA DNA Mariner 426 543 -43 1434 148 113 14 chr13 26047060 26047344 -93697554 + L1MB5 LINE L1 5823 6134 -40 290 183 0 0 chr13 26047345 26047405 -93697493 - Alu SINE Alu -1 301 242 2211 180 72 40 chr13 26047411 26047883 -93697015 - LTR22 LTR ERVK -22 487 1 235 245 0 19 chr13 26047908 26047961 -93696937 - FRAM/FAM SINE Alu -122 44 1 1473 111 19 0 chr13 26048358 26048566 -93696332 + AluSg/x SINE Alu 81 292 -18 2368 101 0 0 chr13 26049197 26049494 -93695404 - AluSq SINE Alu -16 297 1 2147 106 28 0 chr13 26049495 26049778 -93695120 - AluSx SINE Alu -15 297 7 1223 201 98 56 chr13 26050070 26050479 -93694419 + L1MD2 LINE L1 5718 6143 -216 710 213 7 0 chr13 26050481 26050631 -93694267 + L1MD2 LINE L1 6195 6345 -14 21 0 0 0 chr13 26050637 26050658 -93694240 + AT_rich Low_complexity Low_complexity 1 21 0 4280 198 67 25 chr13 26051386 26052863 -93692035 - L1MB8 LINE L1 -1 6177 4764 1769 169 17 3 chr13 26052863 26053158 -93691740 + AluJb SINE Alu 1 299 -13 4280 198 67 25 chr13 26053158 26053419 -93691479 - L1MB8 LINE L1 -1414 4764 4515 2045 144 0 16 chr13 26053419 26053731 -93691167 - AluSg SINE Alu -3 307 1 4280 198 67 25 chr13 26053731 26053852 -93691046 - L1MB8 LINE L1 -1663 4515 4401 2362 89 0 32 chr13 26053852 26054168 -93690730 - AluY SINE Alu -5 306 1 4280 198 67 25 chr13 26054168 26054219 -93690679 - L1MB8 LINE L1 -1777 4401 4201 3019 157 113 36 chr13 26054234 26054870 -93690028 - LTR8 LTR ERV1 -5 686 2 4517 229 86 35 chr13 26054871 26055586 -93689312 - L1MB8 LINE L1 -1948 4198 3521 1708 164 31 11 chr13 26055586 26055872 -93689026 - AluJb SINE Alu -13 299 8 4517 229 86 35 chr13 26055872 26056317 -93688581 - L1MB8 LINE L1 -2625 3521 3100 1465 208 52 0 chr13 26056317 26056605 -93688293 - AluJb SINE Alu -9 303 1 4517 229 86 35 chr13 26056605 26056984 -93687914 - L1MB8 LINE L1 -3046 3100 2569 2182 124 0 0 chr13 26056984 26057282 -93687616 + AluSx SINE Alu 8 305 -7 4517 229 86 35 chr13 26057282 26057352 -93687546 - L1MB8 LINE L1 -3577 2569 2504 790 268 149 29 chr13 26057367 26057943 -93686955 + L2 LINE L2 2671 3313 0 275 216 165 41 chr13 26058154 26058251 -93686647 - L2 LINE L2 -1 3312 3204 1241 169 125 47 chr13 26058441 26058522 -93686376 - MER2 DNA MER2_type 0 344 271 2337 103 0 16 chr13 26058522 26058833 -93686065 + AluSx SINE Alu 1 306 -6 1241 169 125 47 chr13 26058833 26059070 -93685828 - MER2 DNA MER2_type -73 271 1 3369 171 40 149 chr13 26060081 26060702 -93684196 - Charlie1 DNA MER1_type -2 2759 2343 2457 82 3 0 chr13 26060702 26061006 -93683892 - AluSp SINE Alu -8 305 1 3369 171 40 149 chr13 26061006 26061643 -93683255 - Charlie1 DNA MER1_type -418 2343 1638 736 203 0 0 chr13 26061646 26061779 -93683119 + FLAM_A SINE Alu 1 133 0 410 212 44 53 chr13 26061796 26061909 -93682989 - Charlie1 DNA MER1_type -2641 120 9 274 294 94 39 chr13 26062328 26062508 -93682390 - MER117 DNA MER1_type 0 197 8 26 0 0 0 chr13 26063182 26063208 -93681690 + AT_rich Low_complexity Low_complexity 1 26 0 2103 133 20 0 chr13 26063265 26063567 -93681331 + AluSx SINE Alu 1 308 -4 244 294 79 40 chr13 26064392 26064518 -93680380 + L2 LINE L2 3179 3309 -4 293 244 0 73 chr13 26064763 26064813 -93680085 + L1ME3 LINE L1 5565 5608 -556 2097 132 11 36 chr13 26064813 26065177 -93679721 + THE1A LTR MaLR 1 355 0 293 244 0 73 chr13 26065177 26065208 -93679690 + L1ME3 LINE L1 5608 5640 -524 819 206 0 0 chr13 26065208 26065349 -93679549 + FRAM SINE Alu 1 140 -36 976 220 20 12 chr13 26065350 26065600 -93679298 + L1ME3 LINE L1 5724 5975 -187 694 190 0 0 chr13 26065602 26065718 -93679180 + FLAM_C SINE Alu 1 116 -17 255 270 16 0 chr13 26066085 26066148 -93678750 + HAL1 LINE L1 3 66 -2441 321 68 0 0 chr13 26066150 26066194 -93678704 + (TG)n Simple_repeat Simple_repeat 2 45 0 225 235 136 25 chr13 26066356 26066437 -93678461 + MIR SINE MIR 169 258 -4 513 232 175 6 chr13 26066780 26066957 -93677941 + L1MC4 LINE L1 7068 7274 -768 1253 228 31 98 chr13 26067007 26067224 -93677674 + L1MC4 LINE L1 7538 7768 -274 1785 157 18 0 chr13 26067224 26067504 -93677394 + AluJb SINE Alu 21 305 -7 1253 228 31 98 chr13 26067504 26067696 -93677202 + L1MC4 LINE L1 7768 7905 -137 893 173 49 27 chr13 26067696 26067881 -93677017 + MER5A DNA MER1_type 1 189 0 1253 228 31 98 chr13 26067881 26068009 -93676889 + L1MC4 LINE L1 7905 8040 -2 364 170 0 106 chr13 26068565 26068606 -93676292 + LTR8 LTR ERV1 1 28 -663 2201 123 0 10 chr13 26068606 26068915 -93675983 + AluSc SINE Alu 1 306 -3 364 170 0 106 chr13 26068915 26068967 -93675931 + LTR8 LTR ERV1 28 84 -607 1852 174 7 0 chr13 26069647 26069951 -93674947 - AluJb SINE Alu -5 307 2 1747 171 7 16 chr13 26069971 26070275 -93674623 + AluJo SINE Alu 1 301 -11 412 148 123 0 chr13 26070334 26070415 -93674483 + LTR64 LTR ERVK 455 545 -13 367 137 0 0 chr13 26070498 26070549 -93674349 + MER66A LTR ERV1 287 337 -141 534 322 167 11 chr13 26070574 26071040 -93673858 - L2 LINE L2 -960 2354 1816 2103 110 25 0 chr13 26071314 26071596 -93673302 + AluSx SINE Alu 1 289 -23 1309 146 108 54 chr13 26071683 26072140 -93672758 + LTR64 LTR ERVK 1 545 -13 202 296 45 34 chr13 26072140 26072228 -93672670 - L2 LINE L2 -2009 1305 1217 624 248 155 0 chr13 26072232 26072438 -93672460 - MER102a DNA MER1_type -1 329 92 219 300 113 52 chr13 26072532 26072615 -93672283 - L2 LINE L2 -2127 1187 1110 2235 100 0 10 chr13 26072615 26072916 -93671982 + AluSq SINE Alu 1 298 -15 219 300 113 52 chr13 26072916 26073062 -93671836 - L2 LINE L2 -2204 1110 944 2178 132 64 13 chr13 26073321 26073714 -93671184 + L1MC3 LINE L1 7371 7783 -2 256 281 125 8 chr13 26073995 26074123 -93670775 - L1ME LINE L1 -334 5828 5686 21 0 0 0 chr13 26074711 26074732 -93670166 + GC_rich Low_complexity Low_complexity 1 21 0 209 278 290 11 chr13 26076176 26076352 -93668546 - MIR SINE MIR -16 246 22 1924 109 39 14 chr13 26077517 26077801 -93667097 - AluSp SINE Alu -10 303 13 963 79 43 22 chr13 26077806 26077945 -93666953 - AluSp SINE Alu -171 142 1 2274 94 0 3 chr13 26078697 26078996 -93665902 - AluY SINE Alu -13 298 1 2078 113 18 0 chr13 26079939 26080222 -93664676 - AluSg SINE Alu -20 290 3 419 223 77 15 chr13 26080420 26080550 -93664348 - MLT1A1 LTR MaLR 0 365 228 2771 202 41 41 chr13 26080600 26080750 -93664148 - L1MD1 LINE L1 0 6242 6093 1863 135 25 0 chr13 26080750 26081031 -93663867 + AluSx SINE Alu 4 291 -21 2771 202 41 41 chr13 26081031 26081609 -93663289 - L1MD1 LINE L1 -148 6094 5514 312 142 37 0 chr13 26081610 26081671 -93663227 - MLT1A1 LTR MaLR -365 61 1 860 193 13 0 chr13 26081875 26082025 -93662873 + FRAM SINE Alu 3 154 -12 226 253 77 11 chr13 26082368 26082459 -93662439 + MIR SINE MIR 114 210 -52 306 352 16 8 chr13 26082822 26082947 -93661951 - MIR SINE MIR -67 141 16 476 132 44 88 chr13 26083046 26083160 -93661738 - L1MA10 LINE L1 0 6334 6226 235 328 34 25 chr13 26083268 26083387 -93661511 + L2 LINE L2 2934 3053 -219 185 129 0 0 chr13 26083590 26083621 -93661277 + MIR SINE MIR 220 250 -12 228 349 77 6 chr13 26084244 26084413 -93660485 - L1ME LINE L1 -2183 5625 5445 262 175 461 13 chr13 26084433 26084587 -93660311 + L2 LINE L2 2008 2230 -1084 458 340 13 0 chr13 26084587 26084743 -93660155 + L2 LINE L2 2785 2942 -372 1851 140 17 7 chr13 26085005 26085297 -93659601 - AluJb SINE Alu -17 295 1 1917 89 12 8 chr13 26085510 26085757 -93659141 - AluSq SINE Alu -65 248 1 845 219 27 16 chr13 26086154 26086228 -93658670 + MER5A DNA MER1_type 1 73 -116 2625 36 3 7 chr13 26086228 26086532 -93658366 + AluY SINE Alu 1 303 -8 845 219 27 16 chr13 26086532 26086644 -93658254 + MER5A DNA MER1_type 73 189 0 913 171 63 0 chr13 26087860 26088018 -93656880 - FRAM SINE Alu -8 168 1 1846 120 48 42 chr13 26088082 26088282 -93656616 - MER2 DNA MER2_type -10 335 131 2225 113 0 0 chr13 26088282 26088574 -93656324 + AluSx SINE Alu 1 292 -20 1846 120 48 42 chr13 26088574 26088706 -93656192 - MER2 DNA MER2_type -214 131 1 872 176 28 33 chr13 26089091 26089273 -93655625 - AluJb SINE Alu -3 309 129 22 0 0 0 chr13 26089403 26089425 -93655473 + AT_rich Low_complexity Low_complexity 1 22 0 217 298 0 18 chr13 26089515 26089572 -93655326 + polypyrimidine Low_complexity Low_complexity 3 58 0 456 127 14 0 chr13 26089591 26089662 -93655236 - AluJ/FLAM SINE Alu -238 74 3 391 267 142 33 chr13 26090940 26091180 -93653718 + MLT1L LTR MaLR 127 392 -223 225 301 126 54 chr13 26091556 26091795 -93653103 - L2 LINE L2 -2 3270 3015 2848 10 0 0 chr13 26091859 26092163 -93652735 + AluYa5 SINE Alu 1 304 -7 189 290 100 0 chr13 26092204 26092304 -93652594 - L2 LINE L2 -785 2529 2420 1220 218 14 18 chr13 26092325 26092605 -93652293 + MLT1H LTR MaLR 13 291 -258 295 178 92 0 chr13 26092728 26092803 -93652095 + MLT1H LTR MaLR 418 549 0 2488 76 0 3 chr13 26093358 26093672 -93651226 - AluSq SINE Alu 0 313 1 216 0 0 0 chr13 26095349 26095373 -93649525 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1866 92 64 35 chr13 26095424 26095585 -93649313 - AluSq SINE Alu -23 290 116 195 42 0 0 chr13 26095585 26095609 -93649289 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1866 92 64 35 chr13 26095609 26095729 -93649169 - AluSq SINE Alu -197 116 1 270 0 0 0 chr13 26096987 26097017 -93647881 + (T)n Simple_repeat Simple_repeat 1 30 0 206 372 18 30 chr13 26097817 26097981 -93646917 + L2 LINE L2 2897 3058 -214 242 286 68 38 chr13 26100409 26100542 -93644356 + L2 LINE L2 3172 3308 -5 3565 70 2 5 chr13 26100599 26101044 -93643854 - MLT2A1 LTR ERVL 0 444 1 1976 147 0 13 chr13 26101123 26101435 -93643463 - AluJb SINE Alu -4 308 1 217 291 164 18 chr13 26101548 26101658 -93643240 - L2 LINE L2 -3 3269 3144 206 244 63 58 chr13 26102096 26102232 -93642666 + MIR SINE MIR 20 194 -68 661 198 0 0 chr13 26102279 26102400 -93642498 + FLAM_A SINE Alu 20 140 -2 4066 129 80 49 chr13 26102686 26103447 -93641451 + LTR1 LTR ERV1 1 785 0 325 211 211 32 chr13 26103485 26103580 -93641318 - MIR SINE MIR -61 147 36 191 200 25 0 chr13 26103655 26103695 -93641203 + MER5A DNA MER1_type 50 90 -99 310 323 32 38 chr13 26104611 26104769 -93640129 - L1MC4 LINE L1 -1273 6769 6613 1605 200 54 15 chr13 26104779 26105158 -93639740 - MLT2D LTR ERVL -35 485 1 724 268 11 6 chr13 26105168 26105347 -93639551 - MIR SINE MIR -54 208 29 471 193 43 43 chr13 26105458 26105598 -93639300 - LTR67 LTR ERVL -1 556 417 1644 204 92 54 chr13 26105908 26106353 -93638545 + MLT1C LTR MaLR 6 467 0 231 218 188 38 chr13 26106618 26106751 -93638147 - MLT1J LTR MaLR -147 364 212 2227 74 3 0 chr13 26106752 26107037 -93637861 - AluSx SINE Alu -23 289 4 312 301 0 0 chr13 26107756 26107829 -93637069 + MIR3 SINE MIR 88 160 -48 2059 94 3 20 chr13 26107900 26108199 -93636699 + AluSx SINE Alu 1 294 -18 827 263 20 18 chr13 26108245 26108490 -93636408 - MIR SINE MIR 0 262 18 1911 95 91 0 chr13 26108497 26108771 -93636127 - AluSx SINE Alu -13 299 1 2074 113 0 3 chr13 26109354 26109654 -93635244 + AluSx SINE Alu 1 299 -13 2306 72 0 0 chr13 26109655 26109980 -93634918 + AluY SINE Alu 1 325 0 1726 167 3 0 chr13 26110532 26110834 -93634064 - AluJo SINE Alu 0 304 2 183 80 0 0 chr13 26110904 26110929 -93633969 + (CA)n Simple_repeat Simple_repeat 2 26 0 328 250 22 43 chr13 26110929 26111021 -93633877 - L1MC4 LINE L1 -1339 6703 6614 * 350 192 0 91 chr13 26110958 26111091 -93633807 + L1MC4 LINE L1 6614 6703 -1339 350 192 0 91 chr13 26111094 26111193 -93633705 + L1MC4 LINE L1 6614 6703 -1339 350 192 0 91 chr13 26111196 26111329 -93633569 + L1MC4 LINE L1 6614 6703 -1339 376 218 40 50 chr13 26111343 26111444 -93633454 - L1MC4 LINE L1 -1339 6703 6604 1082 139 92 0 chr13 26111812 26111985 -93632913 + LTR45B LTR ERV1 3 191 -298 997 102 0 15 chr13 26111986 26112123 -93632775 + AluSq/x SINE Alu 1 135 -178 2029 118 0 20 chr13 26112123 26112427 -93632471 + AluSx SINE Alu 1 298 -14 585 235 53 15 chr13 26112428 26112654 -93632244 + LTR45B LTR ERV1 180 619 0 540 225 29 7 chr13 26112687 26112825 -93632073 - L1MD3 LINE L1 0 7995 7855 1262 163 12 33 chr13 26112833 26112966 -93631932 - MLT1D LTR MaLR 0 505 378 2045 141 0 0 chr13 26112966 26113278 -93631620 + AluSx SINE Alu 1 312 0 1262 163 12 33 chr13 26113278 26113384 -93631514 - MLT1D LTR MaLR -127 378 271 608 179 6 96 chr13 26113396 26113552 -93631346 - FLAM_A SINE Alu 0 142 1 1882 161 83 22 chr13 26113556 26113917 -93630981 - L1MC1 LINE L1 -8 6325 5943 2257 123 50 17 chr13 26114017 26114376 -93630522 - LTR45B LTR ERV1 -98 391 21 2179 93 7 10 chr13 26114378 26114679 -93630219 + AluSq SINE Alu 1 300 -13 2292 158 68 47 chr13 26114711 26115082 -93629816 - L1MB8 LINE L1 -231 5947 5561 2390 84 0 0 chr13 26115082 26115393 -93629505 - AluY SINE Alu 0 311 1 2292 158 68 47 chr13 26115393 26115533 -93629365 - L1MB8 LINE L1 -617 5561 5425 239 236 36 0 chr13 26115588 26115643 -93629255 - L1MC4 LINE L1 -380 7662 7606 1450 167 48 44 chr13 26115983 26116277 -93628621 + AluJb SINE Alu 1 295 -17 240 232 54 0 chr13 26117112 26117168 -93627730 + L2 LINE L2 3255 3313 0 2377 157 5 5 chr13 26117847 26118236 -93626662 + MLT1B LTR MaLR 1 389 -1 426 285 32 36 chr13 26118794 26118994 -93625904 - MIR SINE MIR -44 218 20 844 261 43 35 chr13 26119082 26119339 -93625559 - MIR SINE MIR -2 260 2 1640 207 28 14 chr13 26119418 26119780 -93625118 + MLT1A2 LTR MaLR 7 373 -1 661 266 91 37 chr13 26120353 26120589 -93624309 - MIR SINE MIR -10 252 3 232 237 145 13 chr13 26120619 26120695 -93624203 - L2 LINE L2 -1 3271 3186 1573 187 127 28 chr13 26120801 26121414 -93623484 + LTR48 LTR ERV1 4 787 0 1019 183 86 81 chr13 26122915 26123131 -93621767 - MER58D DNA MER1_type -2035 385 165 1681 153 0 81 chr13 26123131 26123464 -93621434 + AluJo SINE Alu 3 308 -4 1019 183 86 81 chr13 26123464 26123630 -93621268 - MER58D DNA MER1_type -2255 165 1 222 290 97 0 chr13 26123766 26123859 -93621039 - MIR SINE MIR -37 225 124 2037 112 0 3 chr13 26123943 26124263 -93620635 + AluSx SINE Alu 1 312 0 1592 168 0 67 chr13 26124558 26124744 -93620154 - AluJo SINE Alu -17 295 137 2248 99 0 0 chr13 26124744 26125037 -93619861 + AluSx SINE Alu 1 293 -19 1592 168 0 67 chr13 26125037 26125166 -93619732 - AluJo SINE Alu -175 137 1 1445 184 0 67 chr13 26125624 26125810 -93619088 - AluJo SINE Alu -17 295 137 2248 99 0 0 chr13 26125810 26126103 -93618795 + AluSx SINE Alu 1 293 -19 1445 184 0 67 chr13 26126103 26126232 -93618666 - AluJo SINE Alu -175 137 1 445 269 151 51 chr13 26126324 26126636 -93618262 + L1ME4a LINE L1 5779 6121 0 602 344 9 0 chr13 26127373 26127597 -93617301 + MARNA DNA Mariner 43 268 -318 2285 84 0 13 chr13 26127759 26128070 -93616828 - AluSc SINE Alu -2 307 1 1335 139 183 109 chr13 26128102 26128277 -93616621 - MLT2C2 LTR ERVL 0 464 303 2035 138 0 0 chr13 26128277 26128581 -93616317 - AluSx SINE Alu -8 304 1 1335 139 183 109 chr13 26128581 26128729 -93616169 - MLT2C2 LTR ERVL -161 303 167 1475 127 120 8 chr13 26128729 26128988 -93615910 - AluSg SINE Alu -22 288 1 1335 139 183 109 chr13 26128988 26129095 -93615803 - MLT2C2 LTR ERVL -297 167 1 2119 93 0 40 chr13 26129857 26130178 -93614720 - AluSx SINE Alu -4 308 1 268 191 0 29 chr13 26131744 26131812 -93613086 + L1MC2 LINE L1 6270 6335 -9 2588 16 0 10 chr13 26131826 26132131 -93612767 + AluY SINE Alu 1 302 -9 359 280 120 7 chr13 26132134 26132284 -93612614 - MLT1J LTR MaLR -102 409 243 535 258 104 28 chr13 26132312 26132494 -93612404 - MLT1J LTR MaLR -309 202 7 3170 136 75 84 chr13 26132944 26133725 -93611173 - LTR1 LTR ERV1 -1 784 11 1603 174 0 7 chr13 26134486 26134768 -93610130 - AluJb SINE Alu -20 292 13 241 143 0 0 chr13 26134768 26134803 -93610095 - AluJb SINE Alu -264 35 1 256 196 18 36 chr13 26134917 26134973 -93609925 - L2 LINE L2 -1 3271 3217 26 0 0 0 chr13 26136026 26136052 -93608846 + AT_rich Low_complexity Low_complexity 1 26 0 209 0 97 0 chr13 26136052 26136083 -93608815 + T-rich Low_complexity Low_complexity 5 38 0 802 169 6 25 chr13 26136087 26136247 -93608651 - FRAM SINE Alu 0 176 20 3547 167 27 6 chr13 26136263 26136899 -93607999 - L1MC1 LINE L1 0 6333 5685 1894 129 0 31 chr13 26136899 26137077 -93607821 - AluSx SINE Alu -5 307 142 2053 118 3 10 chr13 26137077 26137383 -93607515 - AluSx SINE Alu -8 304 1 1894 129 0 31 chr13 26137383 26137521 -93607377 - AluSx SINE Alu -170 142 1 3068 213 20 23 chr13 26137524 26138255 -93606643 - L1MC1 LINE L1 -840 5306 4578 667 251 126 27 chr13 26138255 26138538 -93606360 - L1ME LINE L1 -495 5659 5360 318 232 29 0 chr13 26138558 26138627 -93606271 + L1MC4 LINE L1 6648 6718 -1324 1426 157 11 45 chr13 26138638 26138905 -93605993 - AluJo SINE Alu -54 258 1 1043 181 0 19 chr13 26138937 26139142 -93605756 - AluJo SINE Alu -25 287 87 936 260 87 9 chr13 26139144 26139574 -93605324 - L1M4 LINE L1 -757 5389 4923 2291 72 7 10 chr13 26139574 26139881 -93605017 - AluSx SINE Alu -4 308 3 936 260 87 9 chr13 26139881 26139917 -93604981 - L1M4 LINE L1 -1223 4923 4891 249 188 0 42 chr13 26140279 26140327 -93604571 - 7SK RNA RNA -146 47 2 814 305 66 81 chr13 26140819 26141291 -93603607 + L3 LINE CR1 1108 1572 -5 460 254 0 58 chr13 26141562 26141619 -93603279 + L1ME3A LINE L1 5776 5835 -335 1561 181 16 29 chr13 26141619 26141934 -93602964 + AluJo SINE Alu 1 311 -1 460 254 0 58 chr13 26141934 26142081 -93602817 + L1ME3A LINE L1 5835 5968 -202 308 263 81 64 chr13 26142102 26142338 -93602560 + L1ME3A LINE L1 5931 6170 0 405 337 60 52 chr13 26142377 26142505 -93602393 + L1MEc LINE L1 1366 1491 -4905 2137 113 3 0 chr13 26142505 26142814 -93602084 + AluSq SINE Alu 1 310 -3 405 337 60 52 chr13 26142814 26143050 -93601848 + L1MEc LINE L1 1491 1733 -4663 705 278 11 40 chr13 26143050 26143327 -93601571 - AluJb SINE Alu -23 289 21 361 255 0 69 chr13 26143513 26143553 -93601345 + L1ME3A LINE L1 5794 5835 -335 1561 181 16 29 chr13 26143553 26143868 -93601030 + AluJo SINE Alu 1 311 -1 361 255 0 69 chr13 26143868 26144015 -93600883 + L1ME3A LINE L1 5835 5968 -202 308 263 81 64 chr13 26144036 26144272 -93600626 + L1ME3A LINE L1 5931 6170 0 2137 113 3 0 chr13 26144439 26144748 -93600150 + AluSq SINE Alu 1 310 -3 232 211 84 21 chr13 26144814 26144909 -93599989 + L1MCa LINE L1 1583 1683 -4743 1853 143 0 7 chr13 26144968 26145254 -93599644 - AluJb SINE Alu -8 304 21 1459 281 55 64 chr13 26145290 26145385 -93599513 - L2 LINE L2 -500 2814 2720 1718 161 0 23 chr13 26145385 26145689 -93599209 - AluJo SINE Alu -5 307 11 1459 281 55 64 chr13 26145689 26146276 -93598622 - L2 LINE L2 -594 2720 2137 917 161 32 16 chr13 26146276 26146462 -93598436 + MER53 DNA DNA 1 189 0 1459 281 55 64 chr13 26146462 26146528 -93598370 - L2 LINE L2 -1177 2137 2072 1267 212 71 163 chr13 26146532 26147169 -93597729 - MLT1G3 LTR MaLR 0 530 1 259 274 98 0 chr13 26147169 26147271 -93597627 - L2 LINE L2 -1245 2069 1958 229 316 86 17 chr13 26148508 26148625 -93596273 - L2 LINE L2 -12 3260 3136 2594 118 6 3 chr13 26148743 26149106 -93595792 - THE1B LTR MaLR 0 364 1 2076 113 14 0 chr13 26149764 26150055 -93594843 - AluSx SINE Alu -17 295 1 3232 134 19 2 chr13 26150087 26150642 -93594256 + L1MC1 LINE L1 5187 5747 -586 1593 125 31 4 chr13 26150642 26150894 -93594004 + L1MC1 LINE L1 6053 6315 -18 3408 179 119 25 chr13 26151003 26151141 -93593757 - Tigger3b DNA MER2_type -1801 1227 1103 5620 134 28 9 chr13 26151141 26152044 -93592854 - MER49 LTR ERV1 -1 922 3 3408 179 119 25 chr13 26152044 26152790 -93592108 - Tigger3b DNA MER2_type -1925 1103 260 498 235 0 0 chr13 26152809 26152911 -93591987 - Tigger3b DNA MER2_type -1129 102 1 520 287 108 84 chr13 26152918 26152943 -93591955 - L1MC4 LINE L1 -140 7902 7879 4403 94 24 0 chr13 26152943 26153562 -93591336 + L1PA10 LINE L1 5535 6168 0 520 287 108 84 chr13 26153562 26153828 -93591070 - L1MC4 LINE L1 -163 7879 7599 1937 137 22 0 chr13 26153828 26154141 -93590757 + AluJb SINE Alu 1 319 0 520 287 108 84 chr13 26154141 26154181 -93590717 - L1MC4 LINE L1 -443 7599 7561 669 191 43 87 chr13 26154188 26154418 -93590480 - L1ME1 LINE L1 -1 6163 5944 391 269 90 25 chr13 26154390 26154591 -93590307 - L1MC5 LINE L1 -475 7486 7273 * 180 0 0 0 chr13 26154697 26154717 -93590181 + (T)n Simple_repeat Simple_repeat 1 20 0 279 237 66 0 chr13 26154871 26154947 -93589951 + L1MC4 LINE L1 7797 7877 -165 * 360 264 75 35 chr13 26154931 26155132 -93589766 - L1MC5 LINE L1 -728 7233 7025 2289 86 0 0 chr13 26155171 26155450 -93589448 + AluSg SINE Alu 1 279 -31 200 33 0 33 chr13 26155454 26155484 -93589414 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 471 235 17 42 chr13 26155706 26155825 -93589073 + MIR SINE MIR 28 143 -119 209 105 0 26 chr13 26156568 26156606 -93588292 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 1188 68 11 6 chr13 26156619 26156796 -93588102 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2253 113 0 3 chr13 26156808 26157119 -93587779 - AluSx SINE Alu -2 310 1 1845 171 36 6 chr13 26157928 26158261 -93586637 - MER2 DNA MER2_type 0 344 2 414 0 0 0 chr13 26158579 26158625 -93586273 + (TG)n Simple_repeat Simple_repeat 2 47 0 805 223 29 11 chr13 26158888 26159063 -93585835 - MER5B DNA MER1_type 0 178 1 845 162 0 29 chr13 26159115 26159342 -93585556 + FLAM_C SINE Alu 1 223 0 1998 130 55 0 chr13 26159342 26159634 -93585264 + AluSx SINE Alu 1 308 -4 302 273 73 47 chr13 26159668 26159818 -93585080 - L1MCa LINE L1 -4266 2160 2007 306 73 0 0 chr13 26159918 26159959 -93584939 + (TA)n Simple_repeat Simple_repeat 1 41 0 2357 75 0 32 chr13 26160017 26160325 -93584573 + AluY SINE Alu 1 298 -13 1833 157 13 13 chr13 26160558 26160858 -93584040 + AluJo SINE Alu 1 300 -12 244 323 172 0 chr13 26162967 26163066 -93581832 + L2 LINE L2 3156 3271 -1 182 97 161 0 chr13 26163653 26163684 -93581214 + L3b LINE CR1 1372 1407 -176 204 174 43 0 chr13 26164595 26164641 -93580257 + (CA)n Simple_repeat Simple_repeat 1 48 0 341 164 38 25 chr13 26164653 26164812 -93580086 + (CA)n Simple_repeat Simple_repeat 1 161 0 346 183 49 28 chr13 26164825 26164967 -93579931 + (CA)n Simple_repeat Simple_repeat 1 145 0 1826 75 4 0 chr13 26165018 26165245 -93579653 + AluSq SINE Alu 85 312 -1 288 53 0 0 chr13 26165378 26165416 -93579482 + (TG)n Simple_repeat Simple_repeat 1 38 0 210 102 34 51 chr13 26165680 26165739 -93579159 + (CACAC)n Simple_repeat Simple_repeat 1 58 0 1644 96 36 0 chr13 26165787 26166007 -93578891 + AluSg/x SINE Alu 83 310 0 21 36 0 0 chr13 26166217 26166245 -93578653 + AT_rich Low_complexity Low_complexity 1 28 0 293 271 188 0 chr13 26166270 26166355 -93578543 + MIR SINE MIR 49 149 -113 873 101 0 0 chr13 26166375 26166494 -93578404 - AluSg/x SINE Alu 0 309 191 2240 116 3 0 chr13 26166833 26167127 -93577771 + AluSx SINE Alu 2 296 -16 366 316 112 51 chr13 26167359 26167751 -93577147 - L2 LINE L2 -638 2676 2261 2517 59 7 0 chr13 26167786 26168091 -93576807 + AluY SINE Alu 1 307 -4 1271 223 103 0 chr13 26168122 26168423 -93576475 - MER7A DNA MER2_type -3 343 14 264 263 75 0 chr13 26169042 26169122 -93575776 - MER96 DNA MER1_type? -89 86 1 187 282 14 42 chr13 26169122 26169193 -93575705 - MIR3 SINE MIR -134 74 6 285 305 158 45 chr13 26169209 26169455 -93575443 + L2 LINE L2 2999 3272 0 2420 155 14 34 chr13 26169937 26170255 -93574643 - L1PA16 LINE L1 -21 6145 5837 1991 120 33 40 chr13 26170255 26170554 -93574344 + AluSx SINE Alu 1 297 -15 2420 155 14 34 chr13 26170554 26170681 -93574217 - L1PA16 LINE L1 -329 5837 5709 500 17 0 0 chr13 26170748 26170806 -93574092 - U6 snRNA snRNA -43 64 7 1395 260 60 75 chr13 26171423 26171652 -93573246 - L1MC4 LINE L1 0 8042 7811 1934 116 191 8 chr13 26171652 26171691 -93573207 - MSTA LTR MaLR -1 427 396 1742 112 0 0 chr13 26171691 26171914 -93572984 + AluSx SINE Alu 1 223 -89 1934 116 191 8 chr13 26171914 26172235 -93572663 - MSTA LTR MaLR -32 396 1 1395 260 60 75 chr13 26172235 26172297 -93572601 - L1MC4 LINE L1 -231 7811 7750 744 163 8 8 chr13 26172297 26172420 -93572478 - FLAM_A SINE Alu -9 124 2 1395 260 60 75 chr13 26172420 26172865 -93572033 - L1MC4 LINE L1 -292 7750 7316 1856 173 7 3 chr13 26172878 26173173 -93571725 - AluJo SINE Alu -16 296 1 291 71 0 0 chr13 26173227 26173269 -93571629 + (CA)n Simple_repeat Simple_repeat 1 42 0 1749 185 0 4 chr13 26173562 26173874 -93571024 + AluJo SINE Alu 2 312 0 1241 162 0 0 chr13 26174763 26175011 -93569887 - AluSg/x SINE Alu 0 366 119 267 79 0 0 chr13 26175160 26175198 -93569700 + (TG)n Simple_repeat Simple_repeat 2 39 0 1010 122 0 34 chr13 26175198 26175346 -93569552 - FRAM SINE Alu -34 142 1 277 258 116 50 chr13 26175509 26175707 -93569191 - L2 LINE L2 -914 2400 2190 938 173 22 22 chr13 26175987 26176166 -93568732 + AluJb SINE Alu 117 295 -17 25 0 0 0 chr13 26176171 26176196 -93568702 + AT_rich Low_complexity Low_complexity 1 25 0 1639 159 0 95 chr13 26176199 26176526 -93568372 + AluJo SINE Alu 3 298 -4 776 118 0 0 chr13 26176536 26176638 -93568260 + FLAM_C SINE Alu 2 103 -40 1713 106 4 13 chr13 26176940 26177175 -93567723 - AluSq SINE Alu -80 233 1 929 189 17 6 chr13 26177180 26177355 -93567543 - AluJo SINE Alu -18 294 118 2448 72 0 13 chr13 26177607 26177913 -93566985 - AluSq SINE Alu -11 302 1 2371 102 0 0 chr13 26179651 26179946 -93564952 + AluSc SINE Alu 1 295 -14 753 176 24 0 chr13 26180047 26180172 -93564726 + FLAM_C SINE Alu 2 129 -14 1651 151 20 59 chr13 26180959 26181264 -93563634 + AluJo SINE Alu 11 303 -9 2048 109 14 14 chr13 26181266 26181580 -93563318 + AluSx SINE Alu 1 314 0 295 234 78 0 chr13 26182123 26182200 -93562698 + L2 LINE L2 3230 3312 -1 2139 122 20 0 chr13 26182228 26182532 -93562366 + AluSx SINE Alu 1 310 -2 29 0 0 0 chr13 26182910 26182939 -93561959 + AT_rich Low_complexity Low_complexity 1 29 0 2171 91 35 0 chr13 26182950 26183235 -93561663 - AluSx SINE Alu -17 295 1 504 0 0 0 chr13 26183241 26183297 -93561601 + (TG)n Simple_repeat Simple_repeat 2 57 0 561 99 0 99 chr13 26183298 26183399 -93561499 - FRAM SINE Alu -30 146 56 2498 90 0 0 chr13 26184983 26185294 -93559604 + AluSq SINE Alu 1 311 -2 204 266 31 16 chr13 26185725 26185789 -93559109 - L3 LINE CR1 -1068 509 445 413 252 208 6 chr13 26185840 26185999 -93558899 + MIR SINE MIR 60 250 -12 284 305 48 19 chr13 26186019 26186124 -93558774 + MIR SINE MIR 30 137 -71 2095 138 7 0 chr13 26186600 26186905 -93557993 - AluSq SINE Alu -6 307 1 22 0 0 0 chr13 26186905 26186927 -93557971 + AT_rich Low_complexity Low_complexity 1 22 0 422 73 104 31 chr13 26186934 26187030 -93557868 - AluSc SINE Alu -24 285 183 222 350 25 0 chr13 26187910 26187990 -93556908 + L2 LINE L2 3232 3313 0 2588 112 65 83 chr13 26188092 26188585 -93556313 - LTR12 LTR ERV1 -230 484 1 583 108 20 10 chr13 26189069 26189171 -93555727 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 1744 163 0 39 chr13 26189175 26189481 -93555417 - AluJo SINE Alu -17 295 2 327 310 65 13 chr13 26189482 26189637 -93555261 - MIR SINE MIR -65 197 35 184 149 11 43 chr13 26190267 26190361 -93554537 + (TG)n Simple_repeat Simple_repeat 2 92 0 473 231 10 0 chr13 26190904 26191008 -93553890 - MIR SINE MIR -100 162 58 220 204 0 0 chr13 26191710 26191759 -93553139 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 4066 145 32 10 chr13 26191833 26192233 -93552665 + L1PB4 LINE L1 5415 5842 -314 2201 93 11 0 chr13 26192233 26192572 -93552326 + AluSx SINE Alu 1 342 0 4066 145 32 10 chr13 26192572 26192893 -93552005 + L1PB4 LINE L1 5842 6154 -2 215 281 44 59 chr13 26193016 26193151 -93551747 - L2 LINE L2 -222 3050 2918 188 240 184 64 chr13 26193266 26193391 -93551507 + L2 LINE L2 2716 2855 -459 234 326 104 14 chr13 26193720 26193864 -93551034 + L2 LINE L2 2340 2496 -818 431 294 222 8 chr13 26193878 26194126 -93550772 - L3 LINE CR1 -1 1576 1276 2335 74 0 49 chr13 26194190 26194516 -93550382 - AluY SINE Alu -1 310 1 234 362 0 0 chr13 26194665 26194734 -93550164 + MIR SINE MIR 14 82 -180 191 288 34 0 chr13 26194777 26194836 -93550062 + MIR SINE MIR 202 262 0 22 0 0 0 chr13 26194949 26194971 -93549927 + AT_rich Low_complexity Low_complexity 1 22 0 727 217 29 0 chr13 26195136 26195274 -93549624 + FLAM_C SINE Alu 2 143 0 215 194 0 0 chr13 26195275 26195311 -93549587 + polypurine Low_complexity Low_complexity 3 38 0 281 232 0 0 chr13 26195530 26195586 -93549312 - L2 LINE L2 0 3272 3217 198 294 156 56 chr13 26195593 26195773 -93549125 + MIR SINE MIR 59 256 -6 264 214 63 151 chr13 26196099 26196225 -93548673 + MIR SINE MIR 34 148 -60 1083 180 114 4 chr13 26196701 26196956 -93547942 - L1MB4 LINE L1 0 6180 5898 289 336 133 7 chr13 26198039 26198310 -93546588 + L2 LINE L2 2916 3220 -52 734 239 121 3 chr13 26198358 26198655 -93546243 - LTR16A1 LTR ERVL -64 393 62 504 246 131 50 chr13 26198762 26198961 -93545937 - MIR SINE MIR 0 262 48 594 286 182 14 chr13 26199818 26200038 -93544860 + MIR SINE MIR 3 259 -3 1553 129 9 0 chr13 26201624 26201841 -93543057 - AluSg/x SINE Alu -17 293 75 2041 120 20 0 chr13 26202750 26203051 -93541847 + AluSg SINE Alu 1 307 -3 973 199 69 6 chr13 26203058 26203285 -93541613 - L1MB3 LINE L1 -41 6142 5906 2592 172 25 6 chr13 26203487 26203958 -93540940 - L1MB3 LINE L1 -251 5932 5453 1023 236 158 27 chr13 26203964 26204201 -93540697 - MER69B DNA AcHobo -1549 977 773 1636 156 41 4 chr13 26204201 26204506 -93540392 + AluJb SINE Alu 3 317 0 1023 236 158 27 chr13 26204506 26204640 -93540258 - MER69B DNA AcHobo -1753 773 556 975 240 48 0 chr13 26204639 26204868 -93540030 - MER69B DNA AcHobo -787 439 200 * 1639 254 33 60 chr13 26204873 26204983 -93539915 - L1MB3 LINE L1 -844 5302 5191 2200 91 7 7 chr13 26204983 26205279 -93539619 - AluSq SINE Alu -17 296 1 1639 254 33 60 chr13 26205279 26205686 -93539212 - L1MB3 LINE L1 -955 5191 4810 1548 178 64 0 chr13 26205686 26205844 -93539054 - AluJb SINE Alu -13 299 153 239 0 32 0 chr13 26205844 26205875 -93539023 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1548 178 64 0 chr13 26205875 26205997 -93538901 - AluJb SINE Alu -159 153 1 1639 254 33 60 chr13 26205997 26206243 -93538655 - L1MB3 LINE L1 -1336 4810 4559 196 281 146 0 chr13 26208668 26208757 -93536141 - L2 LINE L2 -2 3270 3169 3646 141 75 83 chr13 26209937 26210729 -93534169 + LTR1 LTR ERV1 1 785 0 726 200 109 29 chr13 26210848 26211023 -93533875 + MIR SINE MIR 20 208 -54 271 164 15 15 chr13 26211041 26211108 -93533790 + CT-rich Low_complexity Low_complexity 4 70 0 198 238 24 0 chr13 26212194 26212236 -93532662 - MIR SINE MIR -8 254 212 1607 89 0 0 chr13 26212548 26212846 -93532052 + AluSc SINE Alu 67 364 0 1928 141 0 13 chr13 26213431 26213744 -93531154 - AluJo SINE Alu -3 309 1 273 167 0 0 chr13 26214480 26214534 -93530364 + GA-rich Low_complexity Low_complexity 1 54 0 1792 216 109 88 chr13 26215006 26215707 -93529191 - L1MC5 LINE L1 -72 7889 7163 2062 111 44 0 chr13 26215707 26216004 -93528894 - AluSx SINE Alu 0 312 3 1792 216 109 88 chr13 26216004 26216193 -93528705 - L1MC5 LINE L1 -798 7163 6980 1383 99 21 52 chr13 26216290 26216523 -93528375 - AluSc SINE Alu -1 308 83 720 250 137 103 chr13 26216524 26217418 -93527480 - L1MC5 LINE L1 -978 6830 5968 315 49 0 0 chr13 26217418 26217459 -93527439 - L1MB7 LINE L1 -14 6170 6130 2248 98 0 0 chr13 26217459 26217754 -93527144 + AluSg SINE Alu 1 295 -15 720 250 137 103 chr13 26217754 26218079 -93526819 - L1MC5 LINE L1 -1839 5969 5604 386 171 158 0 chr13 26218564 26218640 -93526258 - MIR SINE MIR -60 148 61 2065 104 0 0 chr13 26218699 26218979 -93525919 + AluSc SINE Alu 6 285 -24 697 224 50 6 chr13 26219084 26219263 -93525635 + L1MD1 LINE L1 4724 4910 -1236 359 177 0 13 chr13 26219278 26219357 -93525541 + L1MD1 LINE L1 4966 5043 -1103 1779 151 3 17 chr13 26219382 26219674 -93525224 + AluJo SINE Alu 1 288 -24 2840 201 14 12 chr13 26219680 26220253 -93524645 + L1MD1 LINE L1 5462 6035 -207 246 184 0 0 chr13 26220524 26220573 -93524325 - Alu SINE Alu -5 128 80 1222 170 166 96 chr13 26220582 26220707 -93524191 - Charlie1 DNA MER1_type 0 2761 2646 1969 100 0 0 chr13 26220707 26220968 -93523930 + AluSx SINE Alu 6 266 -46 1222 170 166 96 chr13 26220968 26221331 -93523567 - Charlie1 DNA MER1_type -115 2646 1 821 161 14 14 chr13 26222876 26223035 -93521863 + MER63 DNA MER1_type 12 792 -53 230 303 50 20 chr13 26223115 26223214 -93521684 + L2 LINE L2 3193 3294 -19 2294 95 0 0 chr13 26223291 26223597 -93521301 - AluY SINE Alu -5 306 1 1791 155 3 7 chr13 26223597 26223900 -93520998 - AluSx SINE Alu -8 304 3 1081 103 0 0 chr13 26226674 26226819 -93518079 + AluSx SINE Alu 1 145 -168 2820 135 10 70 chr13 26226819 26227330 -93517568 + LTR12 LTR ERV1 1 480 -234 1021 122 37 0 chr13 26227331 26227495 -93517403 + AluSx SINE Alu 142 311 -1 3331 208 64 40 chr13 26228011 26228615 -93516283 - MER63D DNA MER1_type 0 1061 422 2140 106 0 0 chr13 26228615 26228908 -93515990 - AluSq SINE Alu -19 294 2 3331 208 64 40 chr13 26228908 26229340 -93515558 - MER63D DNA MER1_type -639 422 1 263 294 76 0 chr13 26231100 26231192 -93513706 + L2 LINE L2 3169 3267 -5 688 123 0 0 chr13 26231546 26231652 -93513246 - AluSg/x SINE Alu -1 309 204 1943 131 23 7 chr13 26233147 26233453 -93511445 + AluSx SINE Alu 1 311 -1 342 238 0 0 chr13 26233481 26233544 -93511354 + L2 LINE L2 3212 3274 -39 610 261 15 20 chr13 26233998 26234193 -93510705 - HAL1 LINE L1 -2302 205 12 792 216 70 12 chr13 26234209 26234380 -93510518 - MIR SINE MIR -49 213 33 338 169 127 0 chr13 26234395 26234466 -93510432 + HAL1 LINE L1 302 381 -2126 222 220 0 20 chr13 26234468 26234518 -93510380 + (CA)n Simple_repeat Simple_repeat 1 49 0 1529 225 73 39 chr13 26234527 26235020 -93509878 - LTR53 LTR ERVL -7 512 3 402 227 275 24 chr13 26235081 26235328 -93509570 + HAL1 LINE L1 431 739 -1768 494 224 120 118 chr13 26235399 26235765 -93509133 - LTR48 LTR ERV1 0 787 219 1033 160 0 0 chr13 26235820 26235989 -93508909 - FRAM SINE Alu -7 169 1 773 206 141 5 chr13 26235996 26236180 -93508718 - MER34C LTR ERV1 -373 212 4 2525 200 95 97 chr13 26236181 26236975 -93507923 + HAL1 LINE L1 845 1638 -869 1649 152 19 35 chr13 26236975 26237285 -93507613 - AluJb SINE Alu -2 310 6 2525 200 95 97 chr13 26237285 26237550 -93507348 + HAL1 LINE L1 1638 1902 -605 594 145 0 0 chr13 26237550 26237633 -93507265 + AluS SINE Alu 2 84 -229 498 251 124 26 chr13 26237636 26237903 -93506995 + HAL1 LINE L1 1891 2183 -324 1025 266 21 8 chr13 26237909 26238146 -93506752 + MIR SINE MIR 2 241 -21 2044 127 0 3 chr13 26238165 26238472 -93506426 - AluSc SINE Alu -3 306 1 601 231 37 77 chr13 26238485 26238784 -93506114 + HAL1 LINE L1 2179 2465 -42 510 167 31 10 chr13 26238787 26238883 -93506015 - LTR16A1 LTR ERVL -10 447 350 309 164 49 0 chr13 26239193 26239254 -93505644 + MER90 LTR ERV1 510 573 -2 2052 115 0 3 chr13 26239943 26240257 -93504641 + AluSx SINE Alu 1 313 0 1955 100 39 0 chr13 26240548 26240703 -93504195 - AluSg SINE Alu -19 291 119 920 42 17 0 chr13 26240703 26240823 -93504075 + (TTTC)n Simple_repeat Simple_repeat 3 124 0 1955 100 39 0 chr13 26240823 26240946 -93503952 - AluSg SINE Alu -191 119 2 1212 176 60 4 chr13 26241036 26241269 -93503629 + AluJo SINE Alu 13 258 -54 206 278 37 0 chr13 26241273 26241327 -93503571 + GA-rich Low_complexity Low_complexity 2 57 0 481 193 179 7 chr13 26243181 26243326 -93501572 - MIR SINE MIR -3 259 90 700 201 81 77 chr13 26243763 26243940 -93500958 + MER6B DNA MER2_type 1 181 -684 2106 110 0 0 chr13 26243940 26244239 -93500659 - AluSx SINE Alu -13 299 1 700 201 81 77 chr13 26244239 26244270 -93500628 + MER6B DNA MER2_type 181 210 0 1183 269 59 6 chr13 26244436 26244756 -93500142 - MLT1E LTR MaLR 0 593 257 819 256 68 8 chr13 26244875 26245109 -93499789 - MIR SINE MIR -3 259 12 233 94 0 0 chr13 26245363 26245395 -93499503 - MIR3 SINE MIR -2 206 175 276 197 30 30 chr13 26245454 26245520 -93499378 - MIR3 SINE MIR -2 206 141 298 245 66 19 chr13 26246002 26246108 -93498790 + L1MC5 LINE L1 7807 7917 -44 2128 131 37 100 chr13 26246254 26246712 -93498186 + MSTB1 LTR MaLR 4 432 0 578 224 97 81 chr13 26246787 26247146 -93497752 - MLT1H LTR MaLR -14 576 55 235 369 0 0 chr13 26248315 26248418 -93496480 - L2 LINE L2 -607 2707 2605 417 135 144 48 chr13 26248525 26248629 -93496269 - MER5B DNA MER1_type -64 114 1 333 102 0 0 chr13 26248773 26248832 -93496066 + (CA)n Simple_repeat Simple_repeat 2 60 0 2041 131 0 28 chr13 26248895 26249216 -93495682 + AluSx SINE Alu 1 312 0 261 353 133 0 chr13 26249437 26249587 -93495311 - MIR SINE MIR -71 191 22 203 343 0 0 chr13 26249968 26250038 -93494860 - MIR SINE MIR -95 167 98 189 255 43 0 chr13 26250283 26250330 -93494568 - MER5A DNA MER1_type -1 188 140 183 80 0 0 chr13 26250370 26250395 -93494503 + (T)n Simple_repeat Simple_repeat 1 25 0 311 138 219 0 chr13 26250472 26250545 -93494353 - FLAM_A SINE Alu -48 85 2 739 224 7 0 chr13 26250545 26250692 -93494206 - MER5B DNA MER1_type -4 174 27 213 186 34 102 chr13 26251777 26251836 -93493062 - L2 LINE L2 -59 3254 3200 206 222 263 44 chr13 26251858 26252044 -93492854 - L2 LINE L2 -220 3093 2885 240 292 108 33 chr13 26252134 26252254 -93492644 - MIR SINE MIR -126 136 8 180 275 125 38 chr13 26252655 26252735 -93492163 + L2 LINE L2 2439 2525 -789 * 236 262 33 0 chr13 26252705 26252766 -93492132 - L2 LINE L2 -4 3309 3247 1255 141 5 0 chr13 26253734 26253919 -93490979 + AluJb SINE Alu 1 186 -126 358 281 56 25 chr13 26253943 26254103 -93490795 + L1MC4a LINE L1 5767 5931 -1877 673 156 52 22 chr13 26254431 26254566 -93490332 + FLAM_C SINE Alu 2 140 -3 437 234 91 7 chr13 26255238 26255392 -93489506 - MLT1J LTR MaLR -156 355 189 192 77 0 0 chr13 26255738 26255764 -93489134 + (A)n Simple_repeat Simple_repeat 1 26 0 471 155 282 0 chr13 26256479 26256582 -93488316 + FLAM_C SINE Alu 2 133 0 2367 202 116 3 chr13 26257127 26257737 -93487161 - L1 LINE L1 -743 5403 4725 3044 130 29 6 chr13 26257737 26258220 -93486678 + L1PB2 LINE L1 5651 6144 -7 29 47 0 0 chr13 26259951 26259994 -93484904 + AT_rich Low_complexity Low_complexity 1 43 0 2690 46 0 0 chr13 26263186 26263491 -93481407 - AluY SINE Alu -6 305 1 1521 170 14 22 chr13 26264646 26264922 -93479976 + AluJo SINE Alu 1 274 -38 2042 152 0 10 chr13 26264924 26265234 -93479664 - AluJo SINE Alu -3 309 3 188 264 96 64 chr13 26265244 26265369 -93479529 - L3 LINE CR1 -393 1184 1056 2191 99 3 0 chr13 26265654 26265948 -93478950 + AluSx SINE Alu 1 295 -17 2738 116 30 25 chr13 26267206 26267637 -93477261 - Tigger2a DNA MER2_type -1 433 1 1393 266 104 27 chr13 26268449 26269419 -93475479 + L2 LINE L2 2230 3275 -38 27 73 0 0 chr13 26270135 26270190 -93474708 + AT_rich Low_complexity Low_complexity 1 55 0 2506 55 3 10 chr13 26270462 26270771 -93474127 + AluY SINE Alu 1 307 -4 230 231 162 46 chr13 26271099 26271315 -93473583 - L1MC5 LINE L1 -145 7816 7576 427 270 70 69 chr13 26271331 26271639 -93473259 + L1MC5 LINE L1 6876 7168 -793 1980 139 14 0 chr13 26271639 26271934 -93472964 + AluJo SINE Alu 2 300 -12 427 270 70 69 chr13 26271934 26271975 -93472923 + L1MC5 LINE L1 7168 7207 -754 274 269 92 43 chr13 26272164 26272305 -93472593 + L1MC5 LINE L1 7272 7419 -542 2280 112 0 3 chr13 26272493 26272796 -93472102 - AluSx SINE Alu -7 305 4 845 166 13 6 chr13 26273278 26273435 -93471463 + L1PB3 LINE L1 5995 6152 -2 183 200 33 50 chr13 26273538 26273598 -93471300 - MER5A DNA MER1_type -2 187 129 1428 194 77 45 chr13 26274033 26274434 -93470464 - L1ME2 LINE L1 -64 6100 5687 2210 81 21 7 chr13 26275197 26275482 -93469416 + AluY SINE Alu 1 289 -22 341 318 8 0 chr13 26275521 26275647 -93469251 + L1M4 LINE L1 2232 2358 -3788 1856 98 17 56 chr13 26275748 26276035 -93468863 + AluSx SINE Alu 15 290 -22 207 335 81 12 chr13 26276128 26276301 -93468597 + L2 LINE L2 2449 2633 -681 209 348 65 11 chr13 26276665 26276757 -93468141 + L2 LINE L2 3129 3225 -47 726 200 113 16 chr13 26278653 26278838 -93466060 - MIR SINE MIR -1 261 59 278 0 54 0 chr13 26279328 26279365 -93465533 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2258 82 0 0 chr13 26279367 26279649 -93465249 - AluSx SINE Alu -30 282 1 2191 124 7 0 chr13 26280292 26280599 -93464299 - AluSx SINE Alu -3 309 1 401 300 135 31 chr13 26281060 26281320 -93463578 - L3b LINE CR1 -53 1530 1244 2067 109 0 68 chr13 26281821 26282143 -93462755 + AluSg SINE Alu 1 300 -10 2234 111 0 10 chr13 26284005 26284311 -93460587 + AluSx SINE Alu 3 305 -7 457 185 91 194 chr13 26285050 26285390 -93459508 + MLT1J LTR MaLR 1 305 -206 239 307 88 22 chr13 26285423 26285560 -93459338 + MLT1J LTR MaLR 299 444 -67 1571 65 0 0 chr13 26286361 26286545 -93458353 + AluY SINE Alu 1 184 -127 691 109 117 16 chr13 26286721 26286849 -93458049 + AluJb SINE Alu 1 141 -171 2569 65 0 0 chr13 26286888 26287197 -93457701 + AluY SINE Alu 1 309 -2 2158 110 10 0 chr13 26287711 26288001 -93456897 + AluSx SINE Alu 1 293 -19 2310 75 0 3 chr13 26288005 26288316 -93456582 + AluY SINE Alu 1 310 0 1973 135 6 35 chr13 26288735 26289053 -93455845 - AluJo SINE Alu -3 309 1 192 152 0 0 chr13 26289202 26289235 -93455663 + (TG)n Simple_repeat Simple_repeat 2 34 0 2631 45 3 3 chr13 26289821 26290131 -93454767 - AluY SINE Alu -1 310 1 2376 52 3 11 chr13 26291114 26291401 -93453497 + AluY SINE Alu 1 285 -26 378 0 0 0 chr13 26291405 26291447 -93453451 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 942 235 4 30 chr13 26291489 26291723 -93453175 - MIR SINE MIR -30 232 5 312 310 9 18 chr13 26291959 26292072 -93452826 + MIR SINE MIR 34 145 -63 852 147 0 0 chr13 26292434 26292563 -93452335 + FRAM SINE Alu 38 166 -10 193 273 227 9 chr13 26292996 26293106 -93451792 + MIR SINE MIR 20 153 -109 22 0 0 0 chr13 26294504 26294526 -93450372 + AT_rich Low_complexity Low_complexity 1 22 0 520 184 136 0 chr13 26294526 26294629 -93450269 - FLAM_C SINE Alu -25 118 2 227 214 125 0 chr13 26294631 26294687 -93450211 + MLT1J LTR MaLR 493 555 0 295 316 50 18 chr13 26294695 26294977 -93449921 + L1ME LINE L1 5528 5818 -303 27 29 0 0 chr13 26295012 26295046 -93449852 + AT_rich Low_complexity Low_complexity 1 34 0 2310 140 102 12 chr13 26295735 26296093 -93448805 - LOR1b LTR ERV1 -2 459 56 1715 158 0 11 chr13 26296093 26296366 -93448532 - AluJo SINE Alu -42 270 1 2310 140 102 12 chr13 26296366 26296428 -93448470 - LOR1b LTR ERV1 -405 56 1 206 306 0 0 chr13 26297055 26297117 -93447781 - L2 LINE L2 -4 3268 3207 266 313 31 0 chr13 26297185 26297281 -93447617 - MIR3 SINE MIR -23 185 87 2212 152 47 2 chr13 26297366 26297767 -93447131 + L1MC1 LINE L1 5915 6333 0 2356 104 10 0 chr13 26297856 26298165 -93446733 - AluSx SINE Alu 0 312 1 1494 195 11 14 chr13 26298240 26298554 -93446344 + AluJo SINE Alu 1 313 0 2021 135 3 7 chr13 26298963 26299267 -93445631 - AluJo SINE Alu -1 311 9 212 228 11 87 chr13 26299440 26299532 -93445366 + MER5A DNA MER1_type 36 120 -69 1438 171 50 12 chr13 26299599 26300030 -93444868 - LTR45B LTR ERV1 0 603 4 443 294 60 28 chr13 26300593 26300841 -93444057 - MIR SINE MIR -5 257 2 225 266 63 0 chr13 26301111 26301190 -93443708 - MIR SINE MIR -67 141 58 2068 104 3 47 chr13 26301405 26301703 -93443195 + AluSx SINE Alu 5 289 -23 222 278 46 37 chr13 26302462 26302570 -93442328 + L2 LINE L2 2591 2699 -615 2299 140 74 2 chr13 26302586 26302992 -93441906 - L1MB3 LINE L1 -15 6168 5734 297 0 0 0 chr13 26303490 26303523 -93441375 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 2062 129 0 4 chr13 26303523 26303802 -93441096 - AluSx SINE Alu -34 278 1 337 238 81 25 chr13 26305522 26305682 -93439216 + L1ME4a LINE L1 5949 6117 -4 831 184 184 30 chr13 26306100 26306408 -93438490 - MSTD LTR MaLR 0 396 1 560 246 53 6 chr13 26306413 26306584 -93438314 - LTR33A LTR ERVL -2 521 343 427 224 154 6 chr13 26306616 26306772 -93438126 - LTR33A LTR ERVL -336 187 9 2617 137 31 24 chr13 26307378 26307803 -93437095 + MSTC LTR MaLR 1 428 0 2128 128 0 6 chr13 26308427 26308739 -93436159 - AluSx SINE Alu -2 310 1 207 0 0 0 chr13 26309453 26309476 -93435422 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1838 125 59 59 chr13 26309994 26310369 -93434529 + THE1C LTR MaLR 1 375 0 2273 69 14 0 chr13 26311492 26311781 -93433117 + AluY SINE Alu 1 293 -18 1973 127 0 0 chr13 26312110 26312386 -93432512 + AluSx SINE Alu 1 276 -36 351 0 0 0 chr13 26312390 26312429 -93432469 + (TG)n Simple_repeat Simple_repeat 2 40 0 1478 221 48 28 chr13 26312542 26312936 -93431962 + L1ME2 LINE L1 5762 6163 -1 1055 173 35 0 chr13 26313243 26313416 -93431482 + AluJo SINE Alu 85 263 -49 186 133 0 0 chr13 26313468 26313498 -93431400 + (A)n Simple_repeat Simple_repeat 1 30 0 229 321 91 29 chr13 26313506 26313749 -93431149 + HAL1 LINE L1 1370 1627 -880 2573 65 0 3 chr13 26313813 26314121 -93430777 + AluY SINE Alu 1 307 -4 2048 133 0 13 chr13 26314139 26314448 -93430450 + AluSg SINE Alu 1 305 -5 2340 107 0 7 chr13 26314560 26314869 -93430029 - AluSx SINE Alu -5 307 1 592 156 83 0 chr13 26315117 26315213 -93429685 + U6 snRNA snRNA 4 107 0 1097 90 7 0 chr13 26315213 26315368 -93429530 + L1MA5A LINE L1 5758 5913 -384 986 169 128 0 chr13 26315373 26315545 -93429353 - MER1B DNA MER1_type -75 222 29 22 0 0 0 chr13 26315630 26315652 -93429246 + AT_rich Low_complexity Low_complexity 1 22 0 800 80 0 0 chr13 26315654 26315754 -93429144 + AluY SINE Alu 1 100 -211 198 0 0 0 chr13 26315756 26315778 -93429120 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 469 300 44 0 chr13 26316322 26316482 -93428416 + MIR SINE MIR 47 213 -49 2203 193 31 13 chr13 26316495 26316947 -93427951 - LTR40b LTR ERVL -2 460 1 23 33 0 0 chr13 26317086 26317116 -93427782 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr13 26317467 26317493 -93427405 + AT_rich Low_complexity Low_complexity 1 26 0 508 284 26 42 chr13 26317672 26317713 -93427185 + LTR67 LTR ERVL 2 42 -515 1163 179 148 39 chr13 26317713 26318070 -93426828 + MSTD LTR MaLR 1 396 0 508 284 26 42 chr13 26318070 26318218 -93426680 + LTR67 LTR ERVL 42 188 -369 718 217 92 56 chr13 26318238 26318318 -93426580 + MLT1B LTR MaLR 1 77 -313 2360 76 3 0 chr13 26318318 26318628 -93426270 + AluY SINE Alu 1 311 0 718 217 92 56 chr13 26318628 26318796 -93426102 + MLT1B LTR MaLR 77 258 -132 1152 209 57 72 chr13 26318798 26319099 -93425799 + MLT1A1 LTR MaLR 1 298 -67 2157 118 10 0 chr13 26319099 26319405 -93425493 - AluSq SINE Alu -4 309 1 1152 209 57 72 chr13 26319405 26319438 -93425460 + MLT1A1 LTR MaLR 298 330 -35 666 265 76 5 chr13 26319524 26319709 -93425189 + LTR67 LTR ERVL 360 557 0 2299 55 0 44 chr13 26319828 26320161 -93424737 - AluY SINE Alu 0 320 1 786 229 24 0 chr13 26320398 26320564 -93424334 - MER58A DNA MER1_type -54 170 1 268 284 0 14 chr13 26320602 26320676 -93424222 - MLT1J LTR MaLR -327 184 112 236 288 104 16 chr13 26321535 26321660 -93423238 - MLT1L LTR MaLR -14 601 466 324 231 39 48 chr13 26321755 26321859 -93423039 - MLT1L LTR MaLR -345 270 168 235 211 42 74 chr13 26322214 26322309 -93422589 - MLT1L LTR MaLR -521 94 3 965 194 47 93 chr13 26322445 26322831 -93422067 + L1ME2 LINE L1 5768 6141 -23 294 197 48 68 chr13 26322857 26323004 -93421894 + L1MC5 LINE L1 7783 7926 -35 305 219 14 14 chr13 26323242 26323315 -93421583 + L2 LINE L2 3200 3272 0 271 189 153 27 chr13 26324268 26324379 -93420519 - MIR SINE MIR -27 235 111 1377 239 107 9 chr13 26324637 26325097 -93419801 - MLT1D LTR MaLR 0 505 1 2261 92 7 14 chr13 26325366 26325660 -93419238 - AluSx SINE Alu -20 292 1 2408 107 0 0 chr13 26327314 26327622 -93417276 - AluSg SINE Alu -2 308 1 2281 118 0 6 chr13 26328759 26329074 -93415824 + AluSq SINE Alu 1 313 0 377 315 47 8 chr13 26329397 26329524 -93415374 - L2 LINE L2 0 3272 3141 278 359 90 9 chr13 26329687 26329899 -93414999 + MIR SINE MIR 13 241 -21 2443 93 0 0 chr13 26330030 26330330 -93414568 + AluSx SINE Alu 1 300 -12 913 125 0 0 chr13 26333546 26333674 -93411224 - FLAM_C SINE Alu -1 132 5 249 300 0 0 chr13 26334545 26334615 -93410283 - MER91B DNA MER1_type -119 71 2 239 188 0 0 chr13 26334626 26334674 -93410224 + L2 LINE L2 3204 3251 -21 303 267 86 0 chr13 26334867 26334972 -93409926 - L2 LINE L2 0 3313 3200 388 282 30 15 chr13 26335229 26335360 -93409538 + MIR SINE MIR 60 192 -70 2190 116 7 23 chr13 26335454 26335764 -93409134 - AluSx SINE Alu -7 305 1 201 390 42 0 chr13 26335835 26335930 -93408968 - MIR SINE MIR -117 145 47 221 256 110 0 chr13 26336995 26337077 -93407821 - L2 LINE L2 -16 3256 3166 236 225 22 34 chr13 26337438 26337527 -93407371 - L2 LINE L2 -49 3223 3136 1174 148 13 52 chr13 26337816 26337881 -93407017 - L1MB3 LINE L1 -5 6178 6112 2283 114 0 0 chr13 26337881 26338178 -93406720 + AluSx SINE Alu 1 297 -15 1174 148 13 52 chr13 26338178 26338341 -93406557 - L1MB3 LINE L1 -71 6112 5959 3389 197 70 19 chr13 26338355 26339010 -93405888 - L1MA4 LINE L1 -2 6298 5591 2612 53 0 0 chr13 26339010 26339309 -93405589 - AluY SINE Alu -12 299 1 3389 197 70 19 chr13 26339309 26339482 -93405416 - L1MA4 LINE L1 -709 5591 5428 248 344 126 20 chr13 26339482 26339729 -93405169 + L2 LINE L2 2999 3271 -1 2075 241 120 17 chr13 26339785 26340425 -93404473 - L1ME3 LINE L1 -1 6161 5456 3958 47 0 0 chr13 26340538 26341011 -93403887 + L1PA5 LINE L1 5682 6154 0 1877 154 3 0 chr13 26341058 26341351 -93403547 - AluJo SINE Alu -1 311 18 1462 128 188 0 chr13 26341469 26341703 -93403195 - AluSg SINE Alu -13 297 20 651 254 88 12 chr13 26341816 26342056 -93402842 + MIR SINE MIR 5 262 0 203 313 38 15 chr13 26342676 26342807 -93402091 + MIR SINE MIR 11 144 -118 3002 153 20 24 chr13 26342874 26343425 -93401473 + L1MB3 LINE L1 5635 6183 0 203 306 56 56 chr13 26343689 26343833 -93401065 - MIR SINE MIR -10 252 109 285 75 0 0 chr13 26343833 26343873 -93401025 + (TG)n Simple_repeat Simple_repeat 2 41 0 307 208 117 13 chr13 26344040 26344117 -93400781 - MLT1K LTR MaLR -333 255 171 240 318 15 0 chr13 26344141 26344207 -93400691 - L1M4 LINE L1 -2051 4095 4029 1005 152 30 0 chr13 26344304 26344468 -93400430 + FRAM SINE Alu 5 173 -3 25 0 0 0 chr13 26344558 26344583 -93400315 + AT_rich Low_complexity Low_complexity 1 25 0 1067 237 29 12 chr13 26344639 26344985 -93399913 + L1MB7 LINE L1 2932 3283 -2863 6822 181 35 18 chr13 26344985 26346988 -93397910 + L1MB7 LINE L1 3790 5813 -371 1467 187 134 27 chr13 26346988 26347362 -93397536 - LTR47A LTR ERVL 0 452 39 2057 109 10 7 chr13 26347362 26347664 -93397234 + AluSc SINE Alu 1 303 -6 757 128 0 14 chr13 26347679 26347820 -93397078 + (GGGGA)n Simple_repeat Simple_repeat 4 142 0 322 137 20 0 chr13 26347820 26347871 -93397027 - LTR47A LTR ERVL -400 52 1 257 135 192 0 chr13 26347871 26347923 -93396975 + L1MB7 LINE L1 5809 5870 -314 1109 124 0 0 chr13 26347923 26348084 -93396814 + AluSg/x SINE Alu 135 295 -15 735 143 0 0 chr13 26348091 26348203 -93396695 + L1MB7 LINE L1 5874 5985 -199 591 165 31 16 chr13 26348210 26348337 -93396561 + L1MB7 LINE L1 6037 6165 -19 2377 92 0 0 chr13 26348353 26348647 -93396251 + AluSg SINE Alu 1 294 -16 379 267 28 22 chr13 26348648 26348828 -93396070 + L1P5 LINE L1 5271 5451 -705 626 289 108 3 chr13 26348835 26349197 -93395701 + L1ME3A LINE L1 5525 5949 -213 25 83 0 0 chr13 26349414 26349474 -93395424 + AT_rich Low_complexity Low_complexity 1 60 0 775 129 8 24 chr13 26349573 26349697 -93395201 + FLAM_C SINE Alu 11 132 -11 192 353 54 27 chr13 26350082 26350343 -93394555 + L2 LINE L2 2811 3078 -194 201 279 93 23 chr13 26350382 26350468 -93394430 + L2 LINE L2 3173 3264 -8 232 170 226 0 chr13 26351085 26351138 -93393760 - LTR16A LTR ERVL -27 423 359 450 255 94 20 chr13 26351862 26352011 -93392887 - L1ME3A LINE L1 -10 6160 6001 246 282 13 0 chr13 26352200 26352278 -93392620 - MIR3 SINE MIR -7 201 123 382 263 57 45 chr13 26353431 26353589 -93391309 - MIR3 SINE MIR -19 189 16 2137 139 24 32 chr13 26353688 26354062 -93390836 + MSTB2 LTR MaLR 87 457 0 412 263 18 18 chr13 26354319 26354433 -93390465 - MIR SINE MIR -128 134 21 304 356 31 36 chr13 26354636 26354830 -93390068 + MIR3 SINE MIR 9 201 -7 2696 122 9 45 chr13 26355205 26355647 -93389251 + MSTB LTR MaLR 1 426 0 381 317 245 20 chr13 26355731 26356372 -93388526 - L3 LINE CR1 -10 1567 783 306 248 129 40 chr13 26356645 26356746 -93388152 + MIR SINE MIR 88 197 -65 279 238 99 45 chr13 26356904 26357127 -93387771 - L1ME4a LINE L1 -83 6038 5804 * 4583 166 70 33 chr13 26357120 26357822 -93387076 - L1MB3 LINE L1 -3 6180 5506 270 0 0 0 chr13 26357822 26357852 -93387046 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1859 137 7 0 chr13 26357852 26358130 -93386768 - AluSq SINE Alu -33 280 1 4583 166 70 33 chr13 26358130 26359264 -93385634 - L1MB3 LINE L1 -676 5507 4255 339 312 55 70 chr13 26360212 26360411 -93384487 + L1M2 LINE L1 836 1031 -5818 2236 79 11 0 chr13 26361867 26362172 -93382726 + AluY SINE Alu 1 308 0 192 362 78 7 chr13 26362672 26362813 -93382085 - L2 LINE L2 -1333 1981 1831 318 304 88 27 chr13 26363248 26363396 -93381502 - MIR SINE MIR -40 222 66 301 119 0 0 chr13 26363579 26363621 -93381277 - 5S rRNA rRNA -79 42 1 417 313 80 13 chr13 26364136 26364286 -93380612 - MIR SINE MIR -1 261 102 774 299 17 14 chr13 26364864 26365158 -93379740 - Charlie7 DNA MER1_type -2051 561 267 312 319 0 0 chr13 26365248 26365339 -93379559 + L1MC4 LINE L1 6613 6703 -1339 453 128 0 110 chr13 26365350 26365514 -93379384 + (TA)n Simple_repeat Simple_repeat 1 146 0 455 120 0 120 chr13 26365546 26365721 -93379177 + (TA)n Simple_repeat Simple_repeat 1 154 0 312 259 12 12 chr13 26365728 26365813 -93379085 - L1MC4 LINE L1 -1344 6698 6614 312 319 0 0 chr13 26365850 26365941 -93378957 - L1MC4 LINE L1 -1339 6703 6613 774 299 17 14 chr13 26366031 26366325 -93378573 + Charlie7 DNA MER1_type 267 561 -2051 417 313 80 13 chr13 26366903 26367053 -93377845 + MIR SINE MIR 102 261 -1 301 119 0 0 chr13 26367568 26367610 -93377288 + 5S rRNA rRNA 1 42 -79 318 304 88 27 chr13 26367793 26367941 -93376957 + MIR SINE MIR 66 222 -40 192 362 78 7 chr13 26368376 26368517 -93376381 + L2 LINE L2 1831 1981 -1333 207 0 0 0 chr13 26369017 26369040 -93375858 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2235 79 11 0 chr13 26369042 26369322 -93375576 - AluY SINE Alu -28 283 1 1528 167 11 14 chr13 26370061 26370336 -93374562 + AluJb SINE Alu 5 278 -34 264 299 0 13 chr13 26370412 26370489 -93374409 + L2 LINE L2 3237 3312 -1 324 245 158 38 chr13 26370616 26370800 -93374098 + L3 LINE CR1 1343 1548 -29 1702 163 11 0 chr13 26371286 26371568 -93373330 - AluJb SINE Alu -23 289 5 2390 66 7 23 chr13 26371960 26372264 -93372634 - AluY SINE Alu -12 299 1 582 268 149 9 chr13 26374152 26374488 -93370410 + L1ME LINE L1 5259 5641 -521 319 232 252 73 chr13 26374490 26374641 -93370257 + MER5B DNA MER1_type 1 178 0 192 205 77 0 chr13 26375100 26375139 -93369759 - L2 LINE L2 -1520 1794 1753 906 210 0 0 chr13 26375153 26375310 -93369588 - AluJb SINE Alu -26 286 130 1986 145 0 7 chr13 26375338 26375634 -93369264 - AluSx SINE Alu -16 296 3 673 252 109 0 chr13 26375806 26376100 -93368798 + L1MC3 LINE L1 7248 7573 -212 250 360 36 56 chr13 26376387 26376526 -93368372 - L2 LINE L2 -434 2880 2747 2255 70 47 7 chr13 26376526 26376825 -93368073 - AluY SINE Alu 0 311 1 250 360 36 56 chr13 26376825 26376935 -93367963 - L2 LINE L2 -567 2747 2636 2037 149 7 0 chr13 26377461 26377769 -93367129 + AluSx SINE Alu 1 310 -2 2268 87 7 0 chr13 26379578 26379866 -93365032 + AluY SINE Alu 1 290 -21 180 220 0 40 chr13 26381073 26381123 -93363775 - MIR SINE MIR -125 137 90 830 262 31 18 chr13 26381488 26381717 -93363181 + MIR SINE MIR 7 238 -24 502 236 273 0 chr13 26381724 26381885 -93363013 - L2 LINE L2 -3 3310 3106 793 246 77 5 chr13 26382069 26382276 -93362622 - MER58A DNA MER1_type -2 222 1 258 32 0 0 chr13 26382712 26382743 -93362155 + (CA)n Simple_repeat Simple_repeat 2 32 0 853 167 73 0 chr13 26383145 26383295 -93361603 + FRAM SINE Alu 1 161 -5 41 21 0 0 chr13 26383602 26383650 -93361248 + AT_rich Low_complexity Low_complexity 1 48 0 260 173 64 27 chr13 26386142 26386252 -93358646 - L1ME4a LINE L1 -3 6118 6005 3842 172 81 10 chr13 26386268 26386970 -93357928 - L1MB8 LINE L1 -16 6162 5348 1697 167 21 11 chr13 26386970 26387252 -93357646 - AluJb SINE Alu -27 285 1 3842 172 81 10 chr13 26387252 26387685 -93357213 - L1MB8 LINE L1 -830 5348 4947 579 263 98 16 chr13 26389170 26389364 -93355534 - MIR SINE MIR 0 262 53 24 32 0 0 chr13 26389555 26389586 -93355312 + AT_rich Low_complexity Low_complexity 1 31 0 222 118 0 0 chr13 26392555 26392589 -93352309 + (TA)n Simple_repeat Simple_repeat 1 34 0 465 321 114 5 chr13 26394998 26395182 -93349716 + MIR SINE MIR 8 211 -51 341 44 0 0 chr13 26395403 26395448 -93349450 - MADE1 DNA Mariner 0 80 36 473 306 156 67 chr13 26395710 26396171 -93348727 - L3 LINE CR1 -644 933 432 189 273 0 0 chr13 26398007 26398051 -93346847 - L2 LINE L2 -1 3312 3269 341 283 76 22 chr13 26398332 26398424 -93346474 + L2 LINE L2 3134 3230 -42 475 297 84 25 chr13 26400452 26400676 -93344222 + MIR SINE MIR 8 245 -17 24 0 0 0 chr13 26400920 26400944 -93343954 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr13 26402666 26402700 -93342198 + AT_rich Low_complexity Low_complexity 1 34 0 235 312 153 35 chr13 26403108 26403390 -93341508 - L2 LINE L2 -1154 2160 1846 730 171 0 14 chr13 26403493 26403639 -93341259 + L1MB7 LINE L1 5997 6140 -44 478 292 153 14 chr13 26403846 26404062 -93340836 - MIR SINE MIR -9 253 8 1417 221 58 120 chr13 26404939 26405564 -93339334 + L1M4 LINE L1 2 587 -5955 2246 163 102 39 chr13 26405585 26406179 -93338719 + L1M4 LINE L1 724 1752 -4893 1210 106 6 18 chr13 26406188 26406358 -93338540 + AluSx SINE Alu 23 190 -122 501 134 0 0 chr13 26406358 26406440 -93338458 + AluSp/q SINE Alu 226 307 -6 2498 218 60 34 chr13 26406440 26407299 -93337599 + L1M4 LINE L1 1087 2134 -4429 1380 173 222 56 chr13 26407313 26407759 -93337139 + MLT2B1 LTR ERVL 1 520 0 1000 204 109 6 chr13 26407766 26408134 -93336764 + L1M4 LINE L1 2121 2531 -3851 870 231 78 36 chr13 26408136 26408438 -93336460 + L1M4 LINE L1 2665 2986 -3396 1770 163 6 32 chr13 26408438 26408751 -93336147 + AluSx SINE Alu 1 305 -7 870 231 78 36 chr13 26408751 26408807 -93336091 + L1M4 LINE L1 2986 3038 -3344 * 1256 199 71 6 chr13 26408804 26409141 -93335757 + L1M4 LINE L1 5219 5577 -805 672 114 124 6 chr13 26409119 26409283 -93335615 - L1M LINE L1 -743 5403 5225 * 817 96 16 0 chr13 26409450 26409575 -93335323 + MER30 DNA MER1_type 1 127 -103 1249 226 186 26 chr13 26410470 26410971 -93333927 + MLT1G LTR MaLR 10 590 0 282 242 65 0 chr13 26411105 26411167 -93333731 + L2 LINE L2 3248 3313 0 24 67 0 0 chr13 26411284 26411329 -93333569 + AT_rich Low_complexity Low_complexity 1 45 0 274 183 256 7 chr13 26412263 26412345 -93332553 + MIR3 SINE MIR 104 204 -4 364 294 110 16 chr13 26412762 26413017 -93331881 - L1ME4a LINE L1 -291 5830 5552 1754 139 36 27 chr13 26414029 26414330 -93330568 - AluJb SINE Alu -8 304 1 2083 57 0 4 chr13 26414621 26414904 -93329994 + L1PA7 LINE L1 5869 6150 -4 783 0 0 0 chr13 26415173 26415260 -93329638 + (TG)n Simple_repeat Simple_repeat 1 87 0 1835 105 26 0 chr13 26415293 26415559 -93329339 - AluSq SINE Alu -40 273 1 645 180 7 50 chr13 26416266 26416405 -93328493 + FLAM_C SINE Alu 1 133 0 1688 176 10 13 chr13 26416410 26416717 -93328181 + AluJo SINE Alu 1 306 -6 2095 137 0 10 chr13 26416839 26417145 -93327753 + AluSx SINE Alu 1 303 -9 2219 105 10 0 chr13 26417147 26417452 -93327446 + AluY SINE Alu 1 308 -3 29 0 0 0 chr13 26417452 26417481 -93327417 + AT_rich Low_complexity Low_complexity 1 29 0 195 100 0 0 chr13 26417992 26418022 -93326876 + (TA)n Simple_repeat Simple_repeat 1 30 0 327 175 10 82 chr13 26418031 26418128 -93326770 - L1MC4 LINE L1 -1339 6703 6614 2428 81 0 3 chr13 26419744 26420054 -93324844 + AluY SINE Alu 2 310 -1 3337 146 82 16 chr13 26420094 26420732 -93324166 + L1MD1 LINE L1 5563 6242 0 463 229 179 0 chr13 26420907 26421047 -93323851 - Charlie1b DNA MER1_type -309 214 50 1722 57 0 5 chr13 26421958 26422167 -93322731 - AluY SINE Alu -17 294 87 1672 135 74 34 chr13 26422235 26422532 -93322366 - AluSx SINE Alu -3 309 1 245 138 0 69 chr13 26422972 26423030 -93321868 + L1MC4 LINE L1 6649 6702 -1340 181 289 104 44 chr13 26423490 26423625 -93321273 + L2 LINE L2 2291 2433 -881 * 3172 266 120 23 chr13 26423608 26425033 -93319865 - L2 LINE L2 -1 3312 1759 216 292 99 59 chr13 26425414 26425567 -93319331 + L2 LINE L2 1851 2015 -1299 2163 109 0 26 chr13 26425567 26425738 -93319160 - AluSq SINE Alu -9 304 143 189 0 0 0 chr13 26425738 26425759 -93319139 + (TG)n Simple_repeat Simple_repeat 2 22 0 2163 109 0 26 chr13 26425759 26425899 -93318999 - AluSq SINE Alu -170 143 1 216 292 99 59 chr13 26425899 26425947 -93318951 + L2 LINE L2 2015 2060 -1254 313 320 98 19 chr13 26425962 26426287 -93318611 - L1ME LINE L1 -454 5667 5317 23 0 0 0 chr13 26426549 26426572 -93318326 + AT_rich Low_complexity Low_complexity 1 23 0 410 329 55 68 chr13 26427103 26427486 -93317412 + L2 LINE L2 2895 3272 0 1751 155 78 0 chr13 26428062 26428397 -93316501 + Tigger2 DNA MER2_type 1 361 -2357 194 382 0 0 chr13 26430071 26430139 -93314759 + MIR3 SINE MIR 117 184 -24 730 238 113 25 chr13 26430501 26430741 -93314157 - MIR SINE MIR -1 261 1 284 159 0 16 chr13 26430789 26430852 -93314046 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 301 273 10 40 chr13 26432068 26432167 -93312731 - L2 LINE L2 0 3272 3177 481 190 34 87 chr13 26432207 26432369 -93312529 - MER33 DNA MER1_type -251 73 1 259 236 0 2 chr13 26432563 26432622 -93312276 - MLT1L LTR MaLR -9 606 522 535 279 155 35 chr13 26432650 26432940 -93311958 - MLT1K LTR MaLR -172 416 92 636 292 74 19 chr13 26433072 26433288 -93311610 - MIR SINE MIR -13 249 22 918 191 0 25 chr13 26433695 26433857 -93311041 - FRAM SINE Alu -8 158 1 488 183 183 0 chr13 26434137 26434241 -93310657 - FLAM_A SINE Alu -6 127 5 2147 220 96 22 chr13 26434242 26434918 -93309980 - L1ME2 LINE L1 -30 6134 5412 23 0 0 0 chr13 26434980 26435003 -93309895 + AT_rich Low_complexity Low_complexity 1 23 0 2197 68 29 0 chr13 26435976 26436254 -93308644 + AluY SINE Alu 1 286 -25 28 29 0 0 chr13 26436665 26436700 -93308198 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr13 26436832 26436874 -93308024 + AT_rich Low_complexity Low_complexity 1 42 0 203 184 0 0 chr13 26438382 26438420 -93306478 + A-rich Low_complexity Low_complexity 1 38 0 575 310 11 16 chr13 26439944 26440128 -93304770 + L2 LINE L2 3113 3295 -18 299 303 90 0 chr13 26440338 26440427 -93304471 + L2 LINE L2 3208 3304 -9 30 45 0 0 chr13 26440690 26440734 -93304164 + AT_rich Low_complexity Low_complexity 1 44 0 270 0 0 0 chr13 26440801 26440831 -93304067 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1813 141 46 0 chr13 26440843 26441106 -93303792 - AluSx SINE Alu -37 275 1 2197 108 0 16 chr13 26441162 26441467 -93303431 - AluSx SINE Alu -12 300 1 4403 149 77 13 chr13 26442476 26443596 -93301302 + L1MB2 LINE L1 4954 6143 -28 281 211 66 0 chr13 26443610 26443686 -93301212 + Charlie5 DNA MER1_type 120 200 -2412 * 362 215 107 27 chr13 26443680 26443829 -93301069 + Charlie5 DNA MER1_type 2348 2508 -104 282 359 76 31 chr13 26443859 26444082 -93300816 - L2 LINE L2 -1567 1747 1515 451 195 7 71 chr13 26444518 26444623 -93300275 - Charlie5 DNA MER1_type 0 2624 2531 1458 172 100 4 chr13 26444623 26444884 -93300014 - AluJb SINE Alu -26 286 1 451 195 7 71 chr13 26444884 26444932 -93299966 - Charlie5 DNA MER1_type -93 2531 2481 2151 121 13 0 chr13 26445501 26445806 -93299092 + AluSx SINE Alu 1 309 -3 3525 153 67 30 chr13 26445992 26446691 -93298207 + LTR8A LTR ERV1 1 725 -2 4325 158 64 21 chr13 26446930 26447754 -93297144 - MER21B LTR ERV1 -3 860 1 2364 115 24 99 chr13 26447949 26448592 -93296306 - MER4E LTR ERV1 0 766 1 239 292 14 14 chr13 26448609 26448681 -93296217 - L2 LINE L2 -55 3258 3187 2165 105 3 3 chr13 26448774 26449060 -93295838 - AluSg SINE Alu -24 286 1 334 311 192 11 chr13 26449928 26450105 -93294793 - MIR SINE MIR -3 259 51 272 250 342 22 chr13 26450271 26450455 -93294443 - MIR SINE MIR -7 255 13 197 319 66 22 chr13 26450552 26450643 -93294255 + L2 LINE L2 2716 2810 -504 216 0 0 0 chr13 26452509 26452533 -93292365 + (CCG)n Simple_repeat Simple_repeat 3 26 0 309 164 45 0 chr13 26455436 26455503 -93289395 + MLT1K LTR MaLR 509 578 -10 185 339 51 0 chr13 26456340 26456399 -93288499 + L2 LINE L2 3249 3310 -3 278 328 106 93 chr13 26456509 26456633 -93288265 - L2 LINE L2 -17 3255 3134 1709 153 58 4 chr13 26456633 26456907 -93287991 + AluJb SINE Alu 1 289 -23 278 328 106 93 chr13 26456907 26457178 -93287720 - L2 LINE L2 -138 3134 2855 316 316 217 25 chr13 26457264 26457836 -93287062 - L2 LINE L2 -620 2694 2013 207 0 0 0 chr13 26459740 26459763 -93285135 + (T)n Simple_repeat Simple_repeat 1 23 0 342 222 105 59 chr13 26460302 26460455 -93284443 - L2 LINE L2 -22 3291 3132 1881 139 20 33 chr13 26460833 26461136 -93283762 - AluJb SINE Alu -13 299 1 730 252 61 8 chr13 26461221 26461467 -93283431 + MIR SINE MIR 2 260 -2 2018 74 0 4 chr13 26461913 26462196 -93282702 - AluSg SINE Alu 0 309 28 790 276 112 0 chr13 26462528 26462760 -93282138 + MIR SINE MIR 2 259 -3 380 297 155 0 chr13 26462927 26463082 -93281816 + L2 LINE L2 2877 3055 -258 936 235 73 17 chr13 26463085 26463539 -93281359 - MLT1F1 LTR MaLR -1 566 4 660 214 61 72 chr13 26463542 26463804 -93281094 + L2 LINE L2 3055 3313 0 745 174 65 131 chr13 26464634 26464909 -93279989 + L2 LINE L2 3057 3313 0 414 297 138 0 chr13 26466543 26466688 -93278210 - MIR SINE MIR -74 188 24 1953 141 10 0 chr13 26466688 26466985 -93277913 - AluJo SINE Alu -12 300 1 296 279 132 37 chr13 26467393 26467583 -93277315 + MIR SINE MIR 28 235 -27 28 48 0 0 chr13 26467627 26467669 -93277229 + AT_rich Low_complexity Low_complexity 1 42 0 384 77 0 0 chr13 26467709 26467761 -93277137 + (TA)n Simple_repeat Simple_repeat 1 52 0 250 329 26 0 chr13 26468316 26468392 -93276506 + MIR3 SINE MIR 92 169 -39 862 154 0 0 chr13 26469813 26469936 -93274962 - FLAM_A SINE Alu -14 128 6 533 223 120 54 chr13 26471940 26472124 -93272774 + MIR SINE MIR 7 202 -60 1372 245 82 3 chr13 26472253 26472721 -93272177 + Zaphod DNA AcHobo 102 655 -3376 757 122 151 0 chr13 26472795 26472934 -93271964 + MER2 DNA MER2_type 7 166 -179 254 157 0 0 chr13 26472982 26473033 -93271865 + MER2 DNA MER2_type 160 210 -135 235 184 0 0 chr13 26473085 26473123 -93271775 + MER2 DNA MER2_type 283 320 -25 396 167 11 0 chr13 26473389 26473479 -93271419 + Zaphod DNA AcHobo 3618 3708 -323 419 184 72 7 chr13 26473543 26473695 -93271203 + Zaphod DNA AcHobo 3829 3990 -41 223 217 0 0 chr13 26474791 26474837 -93270061 - MIR SINE MIR -71 191 146 293 233 27 0 chr13 26477452 26477525 -93267373 + MIR SINE MIR 78 152 -110 383 204 116 35 chr13 26478738 26478910 -93265988 + HAL1 LINE L1 2321 2506 -1 239 294 65 22 chr13 26479155 26479247 -93265651 + L2 LINE L2 3169 3264 -8 769 279 95 29 chr13 26479277 26479403 -93265495 - L1ME4a LINE L1 -11 6110 5994 879 153 0 0 chr13 26479403 26479534 -93265364 - FLAM_C SINE Alu -2 131 1 769 279 95 29 chr13 26479534 26479985 -93264913 - L1ME4a LINE L1 -127 5994 5495 295 365 47 18 chr13 26480489 26480659 -93264239 - L2 LINE L2 -1039 2275 2101 870 183 0 0 chr13 26480954 26481091 -93263807 + FLAM_C SINE Alu 1 137 -6 489 329 160 30 chr13 26481202 26481676 -93263222 + L1MC4a LINE L1 6047 6582 -1226 516 256 6 26 chr13 26481724 26481880 -93263018 + L1MC5 LINE L1 6625 6777 -1184 774 268 110 20 chr13 26481962 26482261 -93262637 - MER77 LTR ERV1 -6 599 274 667 247 157 1 chr13 26482256 26482382 -93262516 - MER77 LTR ERV1 -195 383 278 * 246 32 0 0 chr13 26482382 26482413 -93262485 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 667 247 157 1 chr13 26482413 26482503 -93262395 - MER77 LTR ERV1 -300 278 154 1955 209 127 52 chr13 26482633 26483550 -93261348 + L1MC5 LINE L1 6772 7756 -205 610 148 68 43 chr13 26483631 26483793 -93261105 + Charlie1 DNA MER1_type 2595 2760 -1 256 291 0 0 chr13 26483904 26483959 -93260939 + L2 LINE L2 3210 3264 -8 841 269 79 69 chr13 26484430 26484600 -93260298 - MLT1J LTR MaLR -125 386 219 2202 108 14 0 chr13 26484600 26484896 -93260002 + AluSx SINE Alu 1 300 -12 841 269 79 69 chr13 26484896 26484919 -93259979 - MLT1J LTR MaLR -292 219 198 2013 82 72 14 chr13 26484919 26485211 -93259687 - AluSg1 SINE Alu 0 309 1 841 269 79 69 chr13 26485211 26485395 -93259503 - MLT1J LTR MaLR -313 198 4 1936 216 97 94 chr13 26485579 26487030 -93257868 - Charlie1a DNA MER1_type 0 1455 1 349 278 41 18 chr13 26487266 26487435 -93257463 - L1MC4 LINE L1 -128 7914 7742 387 246 156 45 chr13 26487499 26487698 -93257200 - L1MC4 LINE L1 -508 7534 7314 246 265 22 88 chr13 26488026 26488343 -93256555 + L1ME LINE L1 5010 5305 -841 189 121 0 0 chr13 26488350 26488383 -93256515 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 291 45 27 chr13 26488425 26488535 -93256363 - L2 LINE L2 -17 3296 3185 451 260 66 15 chr13 26488733 26488929 -93255969 + L1ME LINE L1 5614 5819 -302 2084 120 16 3 chr13 26489259 26489567 -93255331 + AluSx SINE Alu 1 312 0 767 206 47 6 chr13 26490082 26490252 -93254646 - MER5B DNA MER1_type 0 178 2 210 311 120 44 chr13 26491183 26491408 -93253490 - L2 LINE L2 -1 3271 3030 279 173 0 0 chr13 26491918 26491970 -93252928 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 273 250 34 45 chr13 26493790 26493878 -93251020 - MIR3 SINE MIR -12 196 110 847 249 82 25 chr13 26494269 26494586 -93250312 - MER46C DNA MER2_type -3 335 1 806 268 20 10 chr13 26494591 26494789 -93250109 - MIR SINE MIR -10 252 53 674 239 86 29 chr13 26494788 26494997 -93249901 - MIR SINE MIR -6 256 36 * 24 0 0 0 chr13 26498608 26498632 -93246266 + AT_rich Low_complexity Low_complexity 1 24 0 1965 122 0 7 chr13 26499461 26499757 -93245141 - AluSx SINE Alu -18 294 1 328 306 52 52 chr13 26500183 26500317 -93244581 + MIR3 SINE MIR 21 154 -54 2169 96 21 3 chr13 26500869 26501160 -93243738 - AluSx SINE Alu -16 296 1 578 270 72 31 chr13 26501457 26501679 -93243219 - MIR SINE MIR -29 233 3 245 218 73 18 chr13 26503292 26503402 -93241496 + L1ME LINE L1 5317 5432 -732 180 77 0 0 chr13 26503439 26503465 -93241433 + (TTTTTG)n Simple_repeat Simple_repeat 6 31 0 1895 156 12 92 chr13 26503637 26503819 -93241079 + MLT1B LTR MaLR 1 131 -259 2157 92 65 0 chr13 26503819 26504111 -93240787 + AluSp SINE Alu 1 311 -2 1895 156 12 92 chr13 26504111 26504352 -93240546 + MLT1B LTR MaLR 131 390 0 494 285 69 34 chr13 26504538 26504829 -93240069 + ERVL LTR ERVL 4679 4979 -785 2500 111 16 3 chr13 26504829 26504878 -93240020 + L1PB1 LINE L1 5734 5781 -370 351 0 0 0 chr13 26504878 26504917 -93239981 + (CA)n Simple_repeat Simple_repeat 2 40 0 2500 111 16 3 chr13 26504917 26505254 -93239644 + L1PB1 LINE L1 5781 6125 -26 372 333 119 11 chr13 26505499 26505676 -93239222 - MER91A DNA MER1_type 0 196 1 469 270 57 6 chr13 26505697 26505856 -93239042 + ERVL LTR ERVL 5224 5390 -374 255 257 9 44 chr13 26506221 26506334 -93238564 + MLT1K LTR MaLR 124 232 -356 25 75 0 0 chr13 26506898 26506951 -93237947 + AT_rich Low_complexity Low_complexity 1 53 0 2651 123 33 12 chr13 26506952 26507375 -93237523 + MSTB1 LTR MaLR 1 432 0 232 234 31 0 chr13 26507392 26507456 -93237442 + L1ME LINE L1 5861 5926 -195 522 141 12 0 chr13 26507527 26507612 -93237286 - MSTB1 LTR MaLR -346 86 1 31 26 0 0 chr13 26507633 26507671 -93237227 + AT_rich Low_complexity Low_complexity 1 38 0 2142 115 0 11 chr13 26507799 26508117 -93236781 - AluSx SINE Alu 0 315 1 5803 140 34 17 chr13 26508313 26509332 -93235566 + Tigger3b DNA MER2_type 137 1177 -1851 2131 82 68 0 chr13 26509332 26509611 -93235287 + AluSp SINE Alu 1 298 -15 5803 140 34 17 chr13 26509611 26509667 -93235231 + Tigger3b DNA MER2_type 1177 1231 0 1468 206 31 17 chr13 26509671 26509861 -93235037 + L1ME LINE L1 5384 5583 -581 2399 106 0 0 chr13 26509861 26510173 -93234725 - AluSx SINE Alu 0 312 1 1468 206 31 17 chr13 26510173 26510342 -93234556 + L1ME LINE L1 5583 5748 -416 504 298 118 28 chr13 26510368 26510768 -93234130 + LTR16A LTR ERVL 11 446 -4 468 291 181 0 chr13 26510782 26511009 -93233889 + HERV16 LTR ERVL 21 288 -4708 2904 279 109 18 chr13 26511184 26512430 -93232468 - ERVL LTR ERVL -677 5087 3728 1001 324 44 15 chr13 26512555 26513036 -93231862 - ERVL LTR ERVL -2224 3540 3046 258 163 0 0 chr13 26513107 26513150 -93231748 + MER94 DNA DNA 71 113 -21 259 270 95 0 chr13 26513161 26513235 -93231663 - ERVL LTR ERVL -2720 3044 2964 3604 268 55 31 chr13 26513958 26515519 -93229379 + L1ME1 LINE L1 37 1635 -4761 2088 217 65 71 chr13 26515845 26516299 -93228599 + L1ME1 LINE L1 4100 4548 -1667 1925 156 0 7 chr13 26516299 26516588 -93228310 + AluJb SINE Alu 1 287 -25 2088 217 65 71 chr13 26516588 26516996 -93227902 + L1ME1 LINE L1 4548 4957 -1258 5206 221 69 53 chr13 26517002 26517064 -93227834 + L1M4b LINE L1 11 70 -6785 1208 196 100 34 chr13 26517064 26517355 -93227543 - AluJo SINE Alu -2 310 1 5206 221 69 53 chr13 26517355 26518553 -93226345 + L1M4b LINE L1 70 1280 -5575 218 32 32 0 chr13 26518553 26518584 -93226314 + (TGG)n Simple_repeat Simple_repeat 1 32 0 5206 221 69 53 chr13 26518584 26519185 -93225713 + L1M4b LINE L1 1280 1870 -4985 2470 241 16 38 chr13 26519193 26519953 -93224945 + L1ME1 LINE L1 5486 6228 -7 1679 303 71 16 chr13 26520349 26521094 -93223804 - ERVL LTR ERVL -3121 2643 1858 504 179 0 45 chr13 26521119 26521231 -93223667 - L1ME1 LINE L1 -6 6160 6054 376 309 62 15 chr13 26521253 26521658 -93223240 + L1M4 LINE L1 4628 5051 -1095 3055 188 81 33 chr13 26521797 26522343 -93222555 + L1MDa LINE L1 26 544 -5996 2116 112 0 10 chr13 26522343 26522639 -93222259 - AluSx SINE Alu -19 293 1 3055 188 81 33 chr13 26522639 26523737 -93221161 + L1MDa LINE L1 544 2261 -4279 2015 137 3 3 chr13 26523737 26524029 -93220869 + AluSx SINE Alu 1 292 -20 3055 188 81 33 chr13 26524029 26524247 -93220651 + L1MDa LINE L1 2261 2467 -4073 332 359 144 0 chr13 26524247 26524517 -93220381 - L2 LINE L2 -677 2637 2329 198 0 0 0 chr13 26524594 26524616 -93220282 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1103 269 40 73 chr13 26524654 26525134 -93219764 + ERVL LTR ERVL 4680 5143 -621 1830 136 28 1 chr13 26525134 26525531 -93219367 - L1MC/D LINE L1 -743 5403 5164 5575 153 30 84 chr13 26525536 26527343 -93217555 - L1PA16 LINE L1 -7 6159 4462 577 103 0 0 chr13 26527343 26527430 -93217468 + Alu SINE Alu 226 312 0 5575 153 30 84 chr13 26527430 26528083 -93216815 - L1PA16 LINE L1 -1704 4462 3775 180 143 0 0 chr13 26528729 26528771 -93216127 + (CAT)n Simple_repeat Simple_repeat 3 44 0 4911 222 24 7 chr13 26529315 26530151 -93214747 - L1 LINE L1 -2358 3788 2920 2394 167 47 0 chr13 26530151 26530558 -93214340 - MSTB LTR MaLR 0 426 1 4911 222 24 7 chr13 26530558 26531078 -93213820 - L1 LINE L1 -3226 2920 2410 588 195 0 65 chr13 26531084 26531143 -93213755 - L1MC/D LINE L1 -985 5161 5100 2287 93 3 0 chr13 26531143 26531444 -93213454 - AluY SINE Alu -9 302 1 588 195 0 65 chr13 26531444 26531569 -93213329 - L1MC/D LINE L1 -1046 5100 4989 2172 75 43 0 chr13 26531701 26531980 -93212918 - AluSx SINE Alu -1 311 21 2908 245 29 7 chr13 26532019 26532143 -93212755 - L1MC/D LINE L1 -1969 4177 4057 1112 211 128 29 chr13 26532143 26532455 -93212443 + MER2 DNA MER2_type 2 344 0 2908 245 29 7 chr13 26532455 26533183 -93211715 - L1MC/D LINE L1 -2089 4057 3306 344 114 41 179 chr13 26533187 26533310 -93211588 - MLT2B2 LTR ERVL 0 515 410 7202 79 6 2 chr13 26533410 26535169 -93209729 + L1PA7 LINE L1 4309 6073 -81 286 98 0 0 chr13 26535167 26535208 -93209690 + L1P3 LINE L1 5807 5847 -325 * 379 220 42 17 chr13 26535291 26535409 -93209489 + MLT2F LTR ERVL 543 663 0 451 161 71 18 chr13 26536174 26536286 -93208612 + L1M3e LINE L1 1 118 -6912 3822 83 0 45 chr13 26536286 26536538 -93208360 - MER41A LTR ERV1 0 554 292 6216 18 0 3 chr13 26536538 26537251 -93207647 - L1PA3 LINE L1 -3 6152 5442 3822 83 0 45 chr13 26537251 26537578 -93207320 - MER41A LTR ERV1 -262 292 1 999 248 29 9 chr13 26537593 26537892 -93207006 + L1M3e LINE L1 137 490 -6540 3711 187 94 32 chr13 26538138 26538275 -93206623 - L1MCa LINE L1 -3875 2732 2605 2274 102 0 3 chr13 26538275 26538570 -93206328 - AluY SINE Alu -15 296 3 3711 187 94 32 chr13 26538570 26540877 -93204021 - L1MCa LINE L1 -4002 2605 266 3049 136 37 9 chr13 26540887 26541423 -93203475 + L1MB2 LINE L1 5619 6169 -2 3703 234 72 18 chr13 26541473 26542771 -93202127 - L1M4 LINE L1 -1576 4570 3202 536 161 71 137 chr13 26542771 26542846 -93202052 - MLT1D LTR MaLR -258 247 169 702 229 0 0 chr13 26542846 26542977 -93201921 - FLAM_A SINE Alu -2 131 1 536 161 71 137 chr13 26542977 26543112 -93201786 - MLT1D LTR MaLR -336 169 51 1783 146 91 0 chr13 26543282 26543569 -93201329 - AluSq SINE Alu 0 313 1 216 254 32 0 chr13 26543584 26543647 -93201251 + GA-rich Low_complexity Low_complexity 4 68 0 324 70 0 0 chr13 26543653 26543696 -93201202 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 263 250 44 0 chr13 26543873 26543941 -93200957 - L2 LINE L2 -12 3301 3231 2049 116 18 0 chr13 26544172 26544468 -93200430 + AluSx SINE Alu 1 301 0 1179 298 82 11 chr13 26544711 26545322 -93199576 + MLT2F LTR ERVL 4 657 -6 21 0 0 0 chr13 26547402 26547423 -93197475 + AT_rich Low_complexity Low_complexity 1 21 0 299 141 141 0 chr13 26547450 26547521 -93197377 + L1MC4 LINE L1 7136 7216 -826 1955 134 9 0 chr13 26547527 26547856 -93197042 + L1MA6 LINE L1 5618 5949 -351 1771 139 3 63 chr13 26548457 26548773 -93196125 - AluJo SINE Alu -15 297 1 502 292 118 0 chr13 26549052 26549213 -93195685 + MIR SINE MIR 56 235 -27 1718 146 34 4 chr13 26549406 26549673 -93195225 + AluJo SINE Alu 19 293 -19 2303 106 0 0 chr13 26549881 26550174 -93194724 + AluSg SINE Alu 1 293 -17 249 125 0 143 chr13 26550314 26550332 -93194566 - L2 LINE L2 0 3313 3294 2090 137 0 0 chr13 26550332 26550661 -93194237 - AluSx SINE Alu 0 329 1 249 125 0 143 chr13 26550661 26550697 -93194201 - L2 LINE L2 -19 3294 3266 1645 319 181 14 chr13 26550707 26551502 -93193396 - L2 LINE L2 -1371 1943 1283 1682 183 62 0 chr13 26551502 26551792 -93193106 + AluJo SINE Alu 1 308 -4 1645 319 181 14 chr13 26551792 26552368 -93192530 - L2 LINE L2 -2031 1283 342 237 257 91 38 chr13 26552373 26552518 -93192380 - MER112 DNA MER1_type -37 223 62 342 0 0 0 chr13 26552518 26552556 -93192342 + (TG)n Simple_repeat Simple_repeat 2 39 0 237 257 91 38 chr13 26552556 26552620 -93192278 - MER112 DNA MER1_type -198 62 3 2333 209 102 56 chr13 26552852 26553616 -93191282 + MER21B LTR ERV1 14 812 -51 2282 111 0 3 chr13 26554189 26554496 -93190402 - AluSx SINE Alu -6 306 1 235 195 126 58 chr13 26554620 26554707 -93190191 - L2 LINE L2 -37 3276 3184 198 103 0 0 chr13 26556422 26556451 -93188447 + (A)n Simple_repeat Simple_repeat 1 29 0 2296 99 3 0 chr13 26556982 26557284 -93187614 + AluSx SINE Alu 1 303 -9 2748 152 27 6 chr13 26557293 26557781 -93187117 + L1MB3 LINE L1 5686 6183 0 280 300 0 0 chr13 26559142 26559232 -93185666 - MIR SINE MIR -54 208 119 1688 159 52 10 chr13 26559401 26559690 -93185208 - AluJo SINE Alu -11 301 1 530 307 132 41 chr13 26559782 26560388 -93184510 - L1MC4a LINE L1 -1768 6040 5380 618 263 11 17 chr13 26560586 26560761 -93184137 - MER5B DNA MER1_type -4 174 1 347 307 39 0 chr13 26561103 26561230 -93183668 - L2 LINE L2 0 3313 3182 315 122 0 0 chr13 26562593 26562642 -93182256 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 2407 78 3 0 chr13 26562879 26563174 -93181724 + AluY SINE Alu 1 296 -15 279 0 0 0 chr13 26563248 26563279 -93181619 + (CA)n Simple_repeat Simple_repeat 1 31 0 254 136 0 17 chr13 26563925 26563984 -93180914 + (GGA)n Simple_repeat Simple_repeat 3 60 0 1963 118 0 7 chr13 26567182 26567454 -93177444 + AluSx SINE Alu 31 300 -12 361 285 77 8 chr13 26567850 26567980 -93176918 - MIR SINE MIR -103 159 21 7183 44 0 5 chr13 26568131 26569236 -93175662 - L1PA6 LINE L1 0 6154 5039 1980 134 0 48 chr13 26569268 26569581 -93175317 - AluJo SINE Alu -14 298 1 1941 209 30 52 chr13 26570224 26570312 -93174586 + MLT1B-int LTR MaLR 941 1029 -342 2084 136 0 16 chr13 26570312 26570620 -93174278 + AluJo SINE Alu 2 304 -8 1941 209 30 52 chr13 26570620 26570827 -93174071 + MLT1B-int LTR MaLR 1029 1227 -144 2192 113 0 3 chr13 26570827 26571120 -93173778 - AluSq SINE Alu -21 292 1 1941 209 30 52 chr13 26571120 26571249 -93173649 + MLT1B-int LTR MaLR 1227 1357 -14 2124 133 7 83 chr13 26571254 26571437 -93173461 + MLT1B LTR MaLR 1 196 -194 2680 52 0 0 chr13 26571437 26571743 -93173155 + AluY SINE Alu 1 306 -5 2302 108 0 0 chr13 26571752 26572059 -93172839 + AluSx SINE Alu 1 307 -5 2124 133 7 83 chr13 26572059 26572286 -93172612 + MLT1B LTR MaLR 204 389 -1 1063 287 123 42 chr13 26572650 26573242 -93171656 + HAL1 LINE L1 16 655 -1852 1298 228 81 54 chr13 26573346 26573850 -93171048 + HAL1 LINE L1 848 1365 -1142 386 253 0 0 chr13 26573852 26573939 -93170959 - L2 LINE L2 0 3313 3227 948 283 42 36 chr13 26573951 26574336 -93170562 - L2 LINE L2 -701 2613 2227 335 23 23 0 chr13 26574647 26574691 -93170207 + (TG)n Simple_repeat Simple_repeat 2 46 0 273 291 67 0 chr13 26574732 26574911 -93169987 - L1M4 LINE L1 -1779 4367 4177 484 132 0 0 chr13 26574912 26574980 -93169918 + Tigger2 DNA MER2_type 1 68 -2650 * 2521 146 31 20 chr13 26574965 26575333 -93169565 + Tigger2 DNA MER2_type 2267 2642 -76 2516 127 2 10 chr13 26575333 26575728 -93169170 + L1MA5A LINE L1 5896 6287 -10 2521 146 31 20 chr13 26575728 26575805 -93169093 + Tigger2 DNA MER2_type 2642 2717 -1 2234 111 3 25 chr13 26576958 26577274 -93167624 + AluSx SINE Alu 1 309 -3 468 269 83 16 chr13 26579113 26579306 -93165592 - MIR SINE MIR -40 222 17 640 154 0 27 chr13 26579483 26579593 -93165305 - MER20 DNA MER1_type 0 219 113 1716 187 19 16 chr13 26579769 26580133 -93164765 - MLT1A1 LTR MaLR 0 365 1 2519 131 26 30 chr13 26580289 26580718 -93164180 + MSTA LTR MaLR 1 427 -1 2606 49 0 7 chr13 26582413 26582718 -93162180 - AluY SINE Alu -8 303 1 8127 120 84 91 chr13 26583558 26585268 -93159630 - pTR5 LTR ERV1 0 2438 741 258 309 151 0 chr13 26585296 26585422 -93159476 - MIR SINE MIR -117 145 1 489 229 210 25 chr13 26586143 26586300 -93158598 + MER5A DNA MER1_type 4 189 0 303 246 29 0 chr13 26586679 26586748 -93158150 - MIR SINE MIR -181 81 11 2303 78 6 38 chr13 26586806 26587125 -93157773 + AluSq SINE Alu 2 310 -3 450 0 0 0 chr13 26587560 26587610 -93157288 + (GA)n Simple_repeat Simple_repeat 1 50 0 494 258 96 12 chr13 26589165 26589332 -93155566 - MIR SINE MIR -74 188 8 1083 137 128 47 chr13 26589382 26589616 -93155282 - ORSL DNA AcHobo 0 275 23 2187 154 158 26 chr13 26589765 26590151 -93154747 - MLT2B2 LTR ERVL 0 515 59 2403 99 0 0 chr13 26590151 26590454 -93154444 + AluSg SINE Alu 1 303 -7 2187 154 158 26 chr13 26590454 26590522 -93154376 - MLT2B2 LTR ERVL -456 59 1 191 319 193 8 chr13 26590671 26590790 -93154108 + MIR SINE MIR 110 250 -12 3259 133 17 17 chr13 26590915 26591448 -93153450 + LTR10A LTR ERV1 13 545 -64 2396 75 7 0 chr13 26592201 26592495 -93152403 - AluY SINE Alu -15 296 1 339 303 37 0 chr13 26592831 26592940 -93151958 - L2 LINE L2 -4 3268 3156 2336 96 3 0 chr13 26592940 26593243 -93151655 - AluSp SINE Alu -9 304 1 1272 226 48 77 chr13 26593243 26593425 -93151473 - HAL1 LINE L1 -540 1967 1781 1548 172 111 0 chr13 26593425 26593600 -93151298 - AluJo SINE Alu -2 310 156 375 23 0 0 chr13 26593600 26593644 -93151254 + (CA)n Simple_repeat Simple_repeat 2 45 0 1548 172 111 0 chr13 26593644 26593747 -93151151 - AluJo SINE Alu -156 156 1 1272 226 48 77 chr13 26593747 26593980 -93150918 - HAL1 LINE L1 -726 1781 1564 482 240 74 50 chr13 26593977 26594312 -93150586 - HAL1 LINE L1 -1482 1025 651 * 1709 162 23 0 chr13 26594313 26594579 -93150319 + AluSx SINE Alu 1 272 -40 1773 128 4 0 chr13 26594581 26594831 -93150067 - AluSx SINE Alu -61 251 1 1016 276 89 31 chr13 26594957 26595373 -93149525 - HAL1 LINE L1 -2046 461 22 286 256 70 0 chr13 26595734 26595820 -93149078 + MIR SINE MIR 110 201 -61 2505 73 0 10 chr13 26596128 26596441 -93148457 - AluY SINE Alu -1 310 1 1899 152 0 7 chr13 26596688 26596984 -93147914 - AluJb SINE Alu -18 294 1 2377 97 0 3 chr13 26597184 26597495 -93147403 - AluSg SINE Alu 0 310 1 706 71 0 0 chr13 26598088 26598186 -93146712 + AluY SINE Alu 205 302 -9 1566 234 34 96 chr13 26598271 26598477 -93146421 + L1ME4a LINE L1 37 254 -6142 2034 136 0 7 chr13 26598477 26598772 -93146126 - AluSx SINE Alu -19 293 1 1566 234 34 96 chr13 26598772 26599041 -93145857 + L1ME4a LINE L1 254 474 -5922 2599 61 0 0 chr13 26599041 26599352 -93145546 - AluY SINE Alu 0 311 1 1566 234 34 96 chr13 26599352 26599436 -93145462 + L1ME4a LINE L1 474 562 -5834 563 274 137 4 chr13 26599431 26599694 -93145204 + L1ME4a LINE L1 1614 1911 -4485 * 2854 235 76 19 chr13 26599694 26600562 -93144336 + L1ME4a LINE L1 2342 3270 -2945 2145 125 0 16 chr13 26600562 26600875 -93144023 - AluSx SINE Alu 0 312 5 2854 235 76 19 chr13 26600875 26600958 -93143940 + L1ME4a LINE L1 3270 3347 -2868 2193 173 116 11 chr13 26601341 26601447 -93143451 - MLT1D LTR MaLR 0 505 412 2153 126 3 0 chr13 26601447 26601749 -93143149 + AluSx SINE Alu 1 303 -9 2193 173 116 11 chr13 26601749 26602099 -93142799 - MLT1D LTR MaLR -93 412 1 2161 133 0 7 chr13 26602583 26602891 -93142007 - AluSg SINE Alu -4 306 1 362 249 148 58 chr13 26602996 26603064 -93141834 + L1ME4a LINE L1 5422 5482 -708 1564 158 32 35 chr13 26603064 26603372 -93141526 + AluJb SINE Alu 1 307 0 362 249 148 58 chr13 26603372 26603647 -93141251 + L1ME4a LINE L1 5482 5797 -393 1983 183 14 6 chr13 26603679 26604034 -93140864 - MLT1A1 LTR MaLR -7 358 1 499 222 15 0 chr13 26604034 26604169 -93140729 + L1ME4a LINE L1 5807 5943 -247 270 0 0 0 chr13 26604216 26604246 -93140652 + (TC)n Simple_repeat Simple_repeat 2 31 0 234 0 0 0 chr13 26604245 26604271 -93140627 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 2287 109 3 0 chr13 26604274 26604578 -93140320 - AluSp SINE Alu -8 305 1 281 222 34 34 chr13 26604831 26604948 -93139950 + (CTATT)n Simple_repeat Simple_repeat 4 120 0 21 0 0 0 chr13 26604961 26604982 -93139916 + AT_rich Low_complexity Low_complexity 1 21 0 748 143 0 9 chr13 26605117 26605229 -93139669 - FLAM_C SINE Alu -26 117 7 233 274 107 24 chr13 26605392 26605476 -93139422 + L2 LINE L2 3195 3285 -28 256 270 40 0 chr13 26605605 26605679 -93139219 + MIR SINE MIR 110 186 -76 190 244 22 0 chr13 26607231 26607276 -93137622 - L2 LINE L2 -6 3307 3262 589 251 22 28 chr13 26607277 26607456 -93137442 - MIR SINE MIR -72 190 13 313 289 128 47 chr13 26609222 26609371 -93135527 - MIR SINE MIR -38 224 64 296 291 128 7 chr13 26610475 26610623 -93134275 - MIR SINE MIR -77 185 20 261 327 223 13 chr13 26610602 26610911 -93133987 + L2 LINE L2 2897 3270 -2 * 401 261 43 9 chr13 26611439 26611554 -93133344 + MIR SINE MIR 32 150 -112 1497 213 80 29 chr13 26611569 26611945 -93132953 - MSTD LTR MaLR -1 395 1 356 314 76 6 chr13 26615099 26615271 -93129627 + MIR SINE MIR 79 262 0 1702 224 47 24 chr13 26615462 26615913 -93128985 - LTR40b LTR ERVL -1 461 1 186 191 0 0 chr13 26616265 26616307 -93128591 + (ATG)n Simple_repeat Simple_repeat 3 44 0 695 247 192 0 chr13 26617066 26617285 -93127613 - MIR SINE MIR 0 262 2 263 237 0 0 chr13 26617442 26617501 -93127397 + MIR SINE MIR 108 166 -96 696 202 8 0 chr13 26617811 26617935 -93126963 + FLAM_C SINE Alu 2 126 -17 34 42 0 0 chr13 26617935 26617983 -93126915 + AT_rich Low_complexity Low_complexity 1 48 0 269 342 58 0 chr13 26620768 26620888 -93124010 - L2 LINE L2 -11 3302 3176 506 253 189 60 chr13 26620978 26621428 -93123470 - MLT1J LTR MaLR -2 509 2 1140 153 62 8 chr13 26621932 26622174 -93122724 + L1MB2 LINE L1 5915 6169 -2 2101 121 0 57 chr13 26622282 26622613 -93122285 + AluSx SINE Alu 1 312 0 422 294 40 0 chr13 26622893 26623019 -93121879 + MIR SINE MIR 16 146 -62 715 148 58 58 chr13 26623073 26623262 -93121636 - MER53 DNA DNA 0 189 1 2435 85 0 7 chr13 26623487 26623792 -93121106 - AluSg SINE Alu -7 303 1 360 0 0 0 chr13 26624098 26624138 -93120760 + (CA)n Simple_repeat Simple_repeat 2 41 0 2144 120 0 20 chr13 26624404 26624731 -93120167 + AluSx SINE Alu 1 312 0 723 258 120 27 chr13 26625506 26625805 -93119093 - L2 LINE L2 0 3313 2987 216 0 0 0 chr13 26626856 26626880 -93118018 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr13 26629281 26629303 -93115595 + GC_rich Low_complexity Low_complexity 1 22 0 206 205 0 0 chr13 26630174 26630213 -93114685 + (CGG)n Simple_repeat Simple_repeat 3 41 0 29 60 0 0 chr13 26631155 26631205 -93113693 + AT_rich Low_complexity Low_complexity 1 50 0 252 59 0 0 chr13 26632149 26632183 -93112715 + (CA)n Simple_repeat Simple_repeat 2 35 0 896 204 14 27 chr13 26632300 26632521 -93112377 - L1MB8 LINE L1 -6 6172 5955 1025 239 56 8 chr13 26632521 26632789 -93112109 - MLT2B3 LTR ERVL 0 554 274 377 293 105 21 chr13 26634212 26634451 -93110447 + MIR SINE MIR 4 262 0 196 305 49 12 chr13 26634452 26634534 -93110364 + L2 LINE L2 3222 3306 -7 1012 156 58 10 chr13 26634732 26634937 -93109961 - MER20 DNA MER1_type -4 215 1 198 0 0 0 chr13 26635408 26635430 -93109468 + (TC)n Simple_repeat Simple_repeat 1 22 0 2162 150 29 0 chr13 26636596 26636975 -93107923 + MLT1B LTR MaLR 1 390 0 412 298 15 15 chr13 26637043 26637174 -93107724 + MIR SINE MIR 20 150 -58 449 266 35 7 chr13 26637663 26637806 -93107092 + LTR67 LTR ERVL 411 557 0 2354 105 3 0 chr13 26637972 26638276 -93106622 - AluSq SINE Alu -8 305 1 848 127 206 0 chr13 26638344 26638509 -93106389 + MSTC LTR MaLR 4 202 -226 1925 97 32 0 chr13 26638516 26638764 -93106134 + AluSx SINE Alu 1 256 -56 419 188 12 0 chr13 26638764 26638849 -93106049 + MSTC LTR MaLR 343 428 0 441 263 111 26 chr13 26639170 26639360 -93105538 - MLT1K LTR MaLR -5 583 378 4211 198 43 19 chr13 26639822 26640809 -93104089 + Charlie1a DNA MER1_type 33 1042 -413 334 234 0 0 chr13 26640810 26640874 -93104024 + AluS SINE Alu 1 64 -239 730 181 27 34 chr13 26640874 26641023 -93103875 - FRAM SINE Alu -18 148 1 249 146 0 0 chr13 26641035 26641076 -93103822 - FRAM SINE Alu -6 4294967287 1 * 1460 158 25 81 chr13 26641076 26641407 -93103491 + Charlie1a DNA MER1_type 1027 1329 -1432 2397 98 7 0 chr13 26641407 26641712 -93103186 - AluSx SINE Alu -5 307 1 1460 158 25 81 chr13 26641712 26641817 -93103081 + Charlie1a DNA MER1_type 1329 1438 -17 738 243 22 11 chr13 26641871 26642056 -93102842 - MIR SINE MIR -59 203 17 2033 135 3 3 chr13 26642463 26642752 -93102146 - AluJo SINE Alu -13 299 11 196 229 229 8 chr13 26643675 26643797 -93101101 + L2 LINE L2 2932 3080 -192 188 298 88 35 chr13 26643901 26644015 -93100883 + L2 LINE L2 3125 3244 -28 2129 163 5 15 chr13 26644794 26645186 -93099712 + MLT1B LTR MaLR 1 388 -2 935 129 29 35 chr13 26645488 26645659 -93099239 + LTR8 LTR ERV1 415 584 -107 286 320 103 20 chr13 26646002 26646302 -93098596 - L2 LINE L2 -360 2954 2630 242 259 71 24 chr13 26646793 26646878 -93098020 - MIR SINE MIR -105 157 69 231 235 0 0 chr13 26647024 26647075 -93097823 + L2 LINE L2 3263 3313 0 1695 168 0 50 chr13 26647198 26647518 -93097380 + AluJo SINE Alu 1 305 0 391 231 122 48 chr13 26647572 26647719 -93097179 - L2 LINE L2 0 3313 3156 1405 153 18 36 chr13 26647786 26648060 -93096838 - Tigger7 DNA MER2_type 0 2587 2319 2230 133 0 0 chr13 26648162 26648464 -93096434 - AluSx SINE Alu -10 302 1 199 399 15 0 chr13 26648464 26648597 -93096301 - L2 LINE L2 -600 2714 2580 546 272 128 41 chr13 26648597 26648917 -93095981 - L2 LINE L2 -679 2635 2288 198 309 161 44 chr13 26649355 26649789 -93095109 - L2 LINE L2 -449 2865 2381 538 164 100 0 chr13 26649857 26649967 -93094931 - MER20 DNA MER1_type 0 219 99 511 293 39 31 chr13 26650057 26650286 -93094612 + MIR SINE MIR 18 248 -14 202 325 48 0 chr13 26650697 26650780 -93094118 - L2 LINE L2 -545 2769 2683 430 268 34 137 chr13 26651003 26651170 -93093728 - L2 LINE L2 0 3313 3195 1818 134 28 14 chr13 26651170 26651454 -93093444 + AluJo SINE Alu 2 289 -23 430 268 34 137 chr13 26651454 26651614 -93093284 - L2 LINE L2 -118 3195 3020 2202 124 0 23 chr13 26651971 26652278 -93092620 + AluSx SINE Alu 1 300 -12 362 261 176 21 chr13 26652362 26652550 -93092348 + L2 LINE L2 2820 3036 -236 224 328 128 8 chr13 26652769 26652894 -93092004 - L2 LINE L2 -681 2633 2494 378 287 17 46 chr13 26653063 26653237 -93091661 - MIR3 SINE MIR -26 182 14 1374 145 19 9 chr13 26653250 26653464 -93091434 + AluJb SINE Alu 85 300 -12 217 279 39 78 chr13 26654196 26654325 -93090573 - L2 LINE L2 -1 3271 3148 1842 154 0 50 chr13 26654389 26654738 -93090160 - AluSx SINE Alu 0 335 2 508 201 272 0 chr13 26654938 26655107 -93089791 - MLT1K LTR MaLR 0 588 374 2259 124 3 0 chr13 26655490 26655797 -93089101 - AluSp SINE Alu -5 308 1 272 290 130 0 chr13 26656090 26656228 -93088670 + MIR SINE MIR 89 244 -18 208 0 62 0 chr13 26656878 26656910 -93087988 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr13 26663860 26663881 -93081017 + AT_rich Low_complexity Low_complexity 1 21 0 321 324 139 21 chr13 26664182 26664614 -93080284 + L2 LINE L2 2454 2936 -378 890 65 0 0 chr13 26665149 26665256 -93079642 + U6 snRNA snRNA 1 107 0 21 57 0 0 chr13 26666530 26666565 -93078333 + GC_rich Low_complexity Low_complexity 1 35 0 368 241 86 17 chr13 26667101 26667217 -93077681 - MIR3 SINE MIR 0 208 85 501 265 26 79 chr13 26667374 26667690 -93077208 - L1ME4a LINE L1 -94 6027 5733 2304 109 0 0 chr13 26667690 26667992 -93076906 - AluSx SINE Alu -10 302 1 501 265 26 79 chr13 26667992 26668053 -93076845 - L1ME4a LINE L1 -388 5733 5670 454 311 57 0 chr13 26668113 26668306 -93076592 + MIR SINE MIR 48 251 -11 3838 136 44 6 chr13 26668579 26669239 -93075659 + L1MB3 LINE L1 5497 6181 -2 612 253 31 39 chr13 26670072 26670301 -93074597 - MIR SINE MIR 0 262 36 190 281 50 58 chr13 26670414 26670535 -93074363 + L2 LINE L2 3169 3288 -25 433 216 69 9 chr13 26670624 26670740 -93074158 + MIR SINE MIR 2 124 -138 2055 116 28 54 chr13 26670769 26670900 -93073998 + MER2 DNA MER2_type 1 134 -210 2132 100 7 0 chr13 26670900 26671215 -93073683 - AluSq SINE Alu 0 317 1 2055 116 28 54 chr13 26671215 26671435 -93073463 + MER2 DNA MER2_type 134 344 0 2009 156 38 6 chr13 26671435 26671775 -93073123 + Tigger3(Golem) DNA MER2_type 2 352 -2677 764 147 7 0 chr13 26671782 26671918 -93072980 + (TAGA)n Simple_repeat Simple_repeat 2 138 0 355 268 21 0 chr13 26671919 26672016 -93072882 + MIR SINE MIR 164 262 0 1503 203 25 6 chr13 26672275 26672590 -93072308 - L1MD1 LINE L1 0 6242 5922 2439 87 0 0 chr13 26672642 26672951 -93071947 - AluY SINE Alu -2 309 1 2413 186 31 10 chr13 26673045 26673566 -93071332 + Charlie1 DNA MER1_type 2143 2674 -87 3212 200 50 37 chr13 26673572 26674621 -93070277 - L1MD1 LINE L1 -424 5935 4901 2028 157 81 8 chr13 26674621 26674990 -93069908 + MSTD LTR MaLR 1 396 0 3212 200 50 37 chr13 26674990 26675149 -93069749 - L1MD1 LINE L1 -1458 4901 4709 1595 168 15 25 chr13 26675149 26675423 -93069475 - AluJo SINE Alu -41 271 1 3212 200 50 37 chr13 26675423 26675520 -93069378 - L1MD1 LINE L1 -1650 4709 4615 2329 58 0 4 chr13 26675589 26675866 -93069032 + AluY SINE Alu 1 276 -35 531 0 0 0 chr13 26675869 26675928 -93068970 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 264 310 11 23 chr13 26675996 26676083 -93068815 + L2 LINE L2 3225 3310 -3 253 331 25 0 chr13 26677195 26677358 -93067540 + L2 LINE L2 2053 2219 -1095 2251 246 63 17 chr13 26677811 26678621 -93066277 + L1MB7 LINE L1 2342 3188 -2958 3621 167 55 43 chr13 26678622 26679430 -93065468 + L1MB7 LINE L1 4858 5676 -508 1884 174 0 6 chr13 26679430 26679606 -93065292 - AluJo SINE Alu -3 309 134 2224 128 0 0 chr13 26679606 26679910 -93064988 - AluSx SINE Alu -8 304 1 1884 174 0 6 chr13 26679910 26680044 -93064854 - AluJo SINE Alu -178 134 1 3621 167 55 43 chr13 26680044 26680402 -93064496 + L1MB7 LINE L1 5676 6028 -156 768 207 30 0 chr13 26680471 26680640 -93064258 + L1ME1 LINE L1 3788 3961 -2185 * 1387 220 140 12 chr13 26680637 26681037 -93063861 + L1ME1 LINE L1 5711 6161 -5 2313 59 0 10 chr13 26681063 26681351 -93063547 + AluY SINE Alu 27 311 0 501 138 73 16 chr13 26681356 26681479 -93063419 + MER69 DNA AcHobo 2250 2379 -147 525 299 136 37 chr13 26681528 26682154 -93062744 + L2 LINE L2 2100 2787 -527 1020 234 58 74 chr13 26682685 26682774 -93062124 - L1MDa LINE L1 -5230 1310 1221 2089 107 10 17 chr13 26682774 26683072 -93061826 + AluSx SINE Alu 1 296 -16 1020 234 58 74 chr13 26683072 26683346 -93061552 - L1MDa LINE L1 -5319 1221 953 464 121 264 0 chr13 26684222 26684313 -93060585 + FLAM_A SINE Alu 9 123 -19 421 281 124 28 chr13 26684313 26684491 -93060407 + L1MC/D LINE L1 5563 5757 -2051 1901 182 0 3 chr13 26685049 26685362 -93059536 - AluJb SINE Alu 0 312 1 6472 116 19 2 chr13 26685581 26687017 -93057881 + L1PB2 LINE L1 4689 6146 -5 25 0 0 0 chr13 26687018 26687043 -93057855 + AT_rich Low_complexity Low_complexity 1 25 0 267 248 63 109 chr13 26687295 26687467 -93057431 + MER5A DNA MER1_type 11 186 -3 567 242 0 19 chr13 26688663 26688820 -93056078 - MIR SINE MIR -90 172 19 811 219 28 0 chr13 26688993 26689171 -93055727 - MER5A DNA MER1_type -6 183 1 1433 248 127 29 chr13 26690702 26691476 -93053422 - L1ME3A LINE L1 -1 6169 5281 624 177 146 12 chr13 26691591 26691755 -93053143 - MIR SINE MIR -46 216 31 3890 100 62 79 chr13 26692651 26693342 -93051556 - LTR1 LTR ERV1 -4 781 102 2341 106 0 0 chr13 26693342 26693645 -93051253 + AluSg SINE Alu 1 303 -7 3890 100 62 79 chr13 26693645 26693685 -93051213 - LTR1 LTR ERV1 -683 102 63 717 174 0 0 chr13 26695090 26695211 -93049687 + FLAM_C SINE Alu 23 143 0 805 213 0 0 chr13 26695262 26695403 -93049495 + AluSg/x SINE Alu 156 296 -16 261 306 110 38 chr13 26695617 26695934 -93048964 - L2 LINE L2 -787 2527 2188 810 145 0 30 chr13 26695968 26696099 -93048799 + FLAM_C SINE Alu 1 127 -16 275 312 172 14 chr13 26696584 26696799 -93048099 - MLT1K LTR MaLR -158 430 182 247 213 88 25 chr13 26696856 26696936 -93047962 + LTR33 LTR ERVL 3 87 -434 408 141 0 0 chr13 26696944 26697015 -93047883 + Alu SINE Alu 240 310 -2 1351 142 32 20 chr13 26697015 26697292 -93047606 - L1MA4 LINE L1 -179 6121 5841 228 194 0 75 chr13 26697403 26697470 -93047428 - HAL1 LINE L1 -2141 366 305 297 0 0 0 chr13 26697589 26697622 -93047276 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 569 283 84 22 chr13 26698051 26698277 -93046621 - LTR33 LTR ERVL -183 338 99 1302 149 20 0 chr13 26698279 26698474 -93046424 - AluJb SINE Alu -113 199 1 899 96 144 12 chr13 26698474 26698641 -93046257 + L1MA4 LINE L1 6112 6300 0 594 233 222 11 chr13 26698926 26699106 -93045792 - MLT1G1 LTR MaLR 0 595 378 360 264 44 11 chr13 26699096 26699187 -93045711 - MLT1G1 LTR MaLR -296 234 141 * 673 113 8 89 chr13 26699187 26699311 -93045587 + AluJb SINE Alu 3 116 -196 254 135 39 0 chr13 26699312 26699364 -93045534 + GA-rich Low_complexity Low_complexity 3 56 0 2787 256 117 64 chr13 26699536 26700436 -93044462 + HAL1 LINE L1 68 1080 -1427 1565 189 0 43 chr13 26700436 26700759 -93044139 - AluJo SINE Alu -3 309 1 2787 256 117 64 chr13 26700759 26701360 -93043538 + HAL1 LINE L1 1080 1648 -859 762 242 119 52 chr13 26701523 26701627 -93043271 + HAL1 LINE L1 2142 2238 -269 828 288 11 30 chr13 26701627 26701787 -93043111 + MIR SINE MIR 1 157 -105 2182 120 0 0 chr13 26701787 26702111 -93042787 + AluSx SINE Alu 1 324 0 828 288 11 30 chr13 26702111 26702216 -93042682 + MIR SINE MIR 157 262 0 762 242 119 52 chr13 26702216 26702454 -93042444 + HAL1 LINE L1 2238 2507 0 1560 151 121 0 chr13 26702943 26703208 -93041690 - AluJo SINE Alu -14 298 2 2316 93 7 0 chr13 26703347 26703636 -93041262 + AluSg SINE Alu 1 291 -19 439 306 62 59 chr13 26703684 26704311 -93040587 + L1MEd LINE L1 821 1551 -939 340 276 29 77 chr13 26704317 26704487 -93040411 - MIR SINE MIR -99 163 2 239 306 81 0 chr13 26704574 26704685 -93040213 + L1ME LINE L1 5752 5871 -299 764 167 0 0 chr13 26706663 26706783 -93038115 - FLAM_C SINE Alu -18 125 6 350 283 44 76 chr13 26706879 26707027 -93037871 - L1ME LINE L1 -505 5616 5465 2304 79 17 0 chr13 26707027 26707319 -93037579 + AluSp SINE Alu 1 297 -16 350 283 44 76 chr13 26707319 26707377 -93037521 - L1ME LINE L1 -656 5465 5407 213 39 0 0 chr13 26707377 26707403 -93037495 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1342 168 45 63 chr13 26707406 26707692 -93037206 - AluJo SINE Alu -31 281 1 350 283 44 76 chr13 26707692 26707858 -93037040 - L1ME LINE L1 -716 5405 5255 391 293 85 49 chr13 26707886 26708516 -93036382 - L1ME LINE L1 -980 5166 4494 2171 117 24 3 chr13 26708516 26708814 -93036084 - AluJb SINE Alu -8 304 1 391 293 85 49 chr13 26708814 26708897 -93036001 - L1ME LINE L1 -1652 4494 4415 2883 13 0 0 chr13 26708899 26709210 -93035688 - AluY SINE Alu 0 311 1 237 316 162 18 chr13 26709287 26709559 -93035339 - L1ME LINE L1 -428 5693 5383 1992 242 78 46 chr13 26709686 26710375 -93034523 + MER20B DNA MER1_type 54 764 -19 391 241 47 78 chr13 26710376 26710458 -93034440 + L1MD2 LINE L1 3768 3851 -2295 2425 96 0 13 chr13 26710458 26710772 -93034126 + AluSx SINE Alu 1 310 -2 391 241 47 78 chr13 26710772 26710921 -93033977 + L1MD2 LINE L1 3851 3992 -2154 217 159 0 23 chr13 26710937 26710981 -93033917 + T-rich Low_complexity Low_complexity 1 43 0 2992 39 0 0 chr13 26710988 26711326 -93033572 - L1PA4 LINE L1 -3 6152 5815 1449 179 46 28 chr13 26711326 26711722 -93033176 + MER74A LTR ERVL 19 473 -85 26 0 0 0 chr13 26711743 26711769 -93033129 + AT_rich Low_complexity Low_complexity 1 26 0 870 213 66 10 chr13 26711799 26711996 -93032902 - AluJo SINE Alu -104 208 1 416 183 12 0 chr13 26711996 26712078 -93032820 + MER74A LTR ERVL 475 557 -1 659 313 23 10 chr13 26712101 26712408 -93032490 + L1MD2 LINE L1 4015 4325 -1821 4224 218 77 45 chr13 26712432 26712480 -93032418 + L1MCb LINE L1 1 46 -6241 207 0 0 0 chr13 26712480 26712503 -93032395 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 4224 218 77 45 chr13 26712503 26713313 -93031585 + L1MCb LINE L1 46 1077 -5210 2221 95 0 3 chr13 26713313 26713638 -93031260 + AluSq SINE Alu 2 325 0 4224 218 77 45 chr13 26713638 26714013 -93030885 + L1MCb LINE L1 1077 1439 -4848 2874 226 115 123 chr13 26714017 26715429 -93029469 + L1MC4a LINE L1 5814 7207 -601 2339 182 9 16 chr13 26715429 26715596 -93029302 + L1MB3 LINE L1 5741 5908 -275 1620 138 45 67 chr13 26715596 26715908 -93028990 + AluJb SINE Alu 2 306 -6 2339 182 9 16 chr13 26715908 26716184 -93028714 + L1MB3 LINE L1 5908 6181 -2 2874 226 115 123 chr13 26716184 26716687 -93028211 + L1MC4a LINE L1 7207 7713 -95 347 175 0 88 chr13 26716754 26716834 -93028064 + L1MC4 LINE L1 7840 7912 -130 230 274 0 0 chr13 26716840 26716891 -93028007 + L2 LINE L2 3221 3271 -1 595 298 76 42 chr13 26717837 26718270 -93026628 + MLT1K LTR MaLR 139 586 -2 181 286 60 75 chr13 26718583 26718716 -93026182 - L2 LINE L2 -995 2319 2189 785 257 23 34 chr13 26718728 26718993 -93025905 - MIR SINE MIR 0 262 1 367 276 0 0 chr13 26719267 26719343 -93025555 + MLT1J1 LTR MaLR 243 318 -128 235 297 55 16 chr13 26719548 26719730 -93025168 + HAL1 LINE L1 1115 1303 -1204 331 335 83 4 chr13 26719773 26720039 -93024859 + HAL1 LINE L1 1372 1658 -849 1778 171 0 17 chr13 26720586 26720873 -93024025 + AluJo SINE Alu 1 282 -30 2687 247 15 15 chr13 26721130 26721871 -93023027 + L1MD2 LINE L1 4462 5202 -944 789 200 0 0 chr13 26721871 26721991 -93022907 + FLAM_A SINE Alu 1 120 -13 1354 165 14 98 chr13 26721999 26722296 -93022602 + AluJo SINE Alu 24 295 -17 46 54 0 0 chr13 26722296 26722370 -93022528 + AT_rich Low_complexity Low_complexity 1 74 0 1982 123 89 17 chr13 26722370 26722719 -93022179 - THE1C LTR MaLR 0 375 2 318 26 0 0 chr13 26722721 26722760 -93022138 + (TG)n Simple_repeat Simple_repeat 2 40 0 3853 191 83 67 chr13 26722776 26722988 -93021910 + L1MD2 LINE L1 5188 5395 -964 1910 161 3 3 chr13 26722988 26723298 -93021600 + AluSx SINE Alu 1 310 -2 3853 191 83 67 chr13 26723298 26723890 -93021008 + L1MD2 LINE L1 5395 6021 -338 2724 141 28 28 chr13 26723890 26724120 -93020778 + L1PA16 LINE L1 5704 5933 -233 1981 147 0 7 chr13 26724120 26724420 -93020478 + AluJb SINE Alu 1 298 -14 2724 141 28 28 chr13 26724420 26724650 -93020248 + L1PA16 LINE L1 5932 6164 -2 3853 191 83 67 chr13 26724650 26724959 -93019939 + L1MD2 LINE L1 6021 6323 -36 21 36 0 0 chr13 26725045 26725073 -93019825 + AT_rich Low_complexity Low_complexity 1 28 0 1748 126 115 0 chr13 26725166 26725469 -93019429 + AluSx SINE Alu 1 312 0 560 307 72 81 chr13 26725765 26726319 -93018579 + LTR67 LTR ERVL 2 550 -7 10928 216 38 16 chr13 26726451 26730156 -93014742 - L1MB4 LINE L1 -100 6080 2293 1690 182 10 17 chr13 26730347 26730638 -93014260 - AluJo SINE Alu -23 289 1 1045 133 22 22 chr13 26731203 26731384 -93013514 + AluSc SINE Alu 126 306 -3 1292 177 55 20 chr13 26731582 26731836 -93013062 - L1MD2 LINE L1 -199 6160 5898 1535 229 33 35 chr13 26731837 26731856 -93013042 - L1MDb LINE L1 -3518 2888 2870 2244 99 7 7 chr13 26731856 26732158 -93012740 - AluSq SINE Alu -11 302 1 1535 229 33 35 chr13 26732158 26732657 -93012241 - L1MDb LINE L1 -3536 2870 2371 791 208 65 6 chr13 26732657 26732825 -93012073 - AluJo SINE Alu -13 299 122 580 219 39 19 chr13 26732826 26733031 -93011867 - L1MDb LINE L1 -4043 2363 2155 1012 203 14 14 chr13 26733031 26733248 -93011650 - AluJo SINE Alu -5 307 91 2298 185 68 6 chr13 26733265 26733767 -93011131 + L1MDa LINE L1 1583 2115 -4425 898 108 23 0 chr13 26733786 26733915 -93010983 - FRAM SINE Alu -19 157 26 3676 212 81 46 chr13 26733919 26734072 -93010826 - L1MDb LINE L1 -4246 2160 2014 1852 175 3 0 chr13 26734072 26734375 -93010523 + AluJo SINE Alu 4 307 -5 3676 212 81 46 chr13 26734375 26736228 -93008670 - L1MDb LINE L1 -4392 2014 25 548 331 6 0 chr13 26736238 26736401 -93008497 - LTR33 LTR ERVL -357 164 1 2223 90 0 33 chr13 26736484 26736785 -93008113 - AluSg1 SINE Alu -18 291 1 2168 123 0 16 chr13 26737106 26737422 -93007476 + AluSx SINE Alu 1 311 -1 207 290 0 0 chr13 26737526 26737588 -93007310 + A-rich Low_complexity Low_complexity 1 62 0 188 258 76 45 chr13 26738022 26738088 -93006810 + L2 LINE L2 3173 3240 -32 788 71 35 14 chr13 26738098 26738239 -93006659 + (GAAA)n Simple_repeat Simple_repeat 3 146 0 226 132 105 0 chr13 26738256 26738294 -93006604 - L2 LINE L2 -10 3262 3221 208 143 0 0 chr13 26738322 26738357 -93006541 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2149 79 68 0 chr13 26739247 26739525 -93005373 - AluSp SINE Alu -16 297 1 508 132 0 13 chr13 26740248 26740324 -93004574 - FLAM_A SINE Alu -25 117 43 3660 73 30 0 chr13 26740541 26740585 -93004313 - MLT2A2 LTR ERVL 0 453 412 505 0 31 0 chr13 26740585 26740650 -93004248 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 3660 73 30 0 chr13 26740650 26741045 -93003853 - MLT2A2 LTR ERVL -41 412 1 466 330 34 21 chr13 26741315 26741554 -93003344 + MIR SINE MIR 20 261 -1 1081 143 53 11 chr13 26742232 26742421 -93002477 + L1MB2 LINE L1 5971 6167 -4 203 317 163 57 chr13 26742615 26742738 -93002160 + L2 LINE L2 3136 3271 -1 513 198 32 226 chr13 26742750 26742829 -93002069 - MIR SINE MIR -33 229 136 1451 199 10 27 chr13 26742829 26742988 -93001910 - AluJo SINE Alu -20 292 139 2435 49 7 20 chr13 26742988 26743293 -93001605 - AluY SINE Alu -10 301 1 1451 199 10 27 chr13 26743293 26743430 -93001468 - AluJo SINE Alu -173 139 1 513 198 32 226 chr13 26743430 26743633 -93001265 - MIR SINE MIR -126 136 2 631 77 62 26 chr13 26743852 26744168 -93000730 + (TG)n Simple_repeat Simple_repeat 1 327 0 370 258 67 33 chr13 26744168 26744288 -93000610 + L2 LINE L2 3165 3288 -25 244 235 0 20 chr13 26744851 26744902 -92999996 - MER2 DNA MER2_type 0 345 296 314 229 0 0 chr13 26744906 26744967 -92999931 + MER2 DNA MER2_type 282 342 -3 4186 106 7 0 chr13 26746286 26746836 -92998062 - MER41A LTR ERV1 0 554 1 2420 96 0 0 chr13 26747356 26747658 -92997240 - AluSx SINE Alu -10 302 1 25 0 0 0 chr13 26747993 26748018 -92996880 + AT_rich Low_complexity Low_complexity 1 25 0 1731 151 0 35 chr13 26748620 26748904 -92995994 + AluJo SINE Alu 11 284 -28 191 308 56 19 chr13 26749006 26749113 -92995785 - MIR SINE MIR -6 256 146 2123 138 0 6 chr13 26749232 26749544 -92995354 + AluSg SINE Alu 1 310 0 319 284 43 50 chr13 26749564 26749705 -92995193 - MER5A DNA MER1_type -48 141 2 209 206 176 0 chr13 26750776 26750844 -92994054 - MIR SINE MIR -12 250 171 2304 104 3 0 chr13 26750929 26751236 -92993662 + AluSx SINE Alu 1 308 -4 2001 131 28 0 chr13 26751236 26751527 -92993371 + AluSx SINE Alu 3 301 -11 569 258 30 0 chr13 26751527 26751659 -92993239 + MIR SINE MIR 38 173 -89 340 289 39 0 chr13 26751733 26751837 -92993061 - MIR SINE MIR -92 170 63 24 0 0 0 chr13 26752834 26752858 -92992040 + AT_rich Low_complexity Low_complexity 1 24 0 2340 61 0 14 chr13 26752858 26753154 -92991744 - AluY SINE Alu -19 292 1 195 42 0 0 chr13 26753993 26754017 -92990881 + (TAA)n Simple_repeat Simple_repeat 1 24 0 207 69 0 0 chr13 26755018 26755047 -92989851 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 204 40 0 0 chr13 26756662 26756687 -92988211 + (CAG)n Simple_repeat Simple_repeat 2 26 0 2402 65 3 0 chr13 26758421 26758715 -92986183 - AluSg SINE Alu -15 295 1 372 274 63 0 chr13 26759107 26759202 -92985696 + MIR3 SINE MIR 76 176 -32 1648 158 87 4 chr13 26760512 26760778 -92984120 - AluJo SINE Alu -24 288 1 2015 130 3 0 chr13 26762508 26762807 -92982091 + AluSx SINE Alu 3 302 -10 933 138 119 0 chr13 26763122 26763281 -92981617 - AluSg/x SINE Alu -5 305 128 264 263 53 0 chr13 26763340 26763416 -92981482 + MIR SINE MIR 68 147 -115 2360 93 0 13 chr13 26763861 26764161 -92980737 - AluSq SINE Alu -17 296 1 2374 67 17 3 chr13 26764745 26765044 -92979854 - AluY SINE Alu -8 303 1 305 236 16 16 chr13 26765083 26765206 -92979692 + (TA)n Simple_repeat Simple_repeat 2 124 0 21 36 0 0 chr13 26765976 26766004 -92978894 + AT_rich Low_complexity Low_complexity 1 28 0 2367 104 3 0 chr13 26766203 26766567 -92978331 - AluSg SINE Alu 0 365 1 225 263 53 0 chr13 26766660 26766736 -92978162 - MIR SINE MIR -115 147 68 23 0 0 0 chr13 26767835 26767858 -92977040 + GC_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr13 26770032 26770063 -92974835 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr13 26770943 26770972 -92973926 + GC_rich Low_complexity Low_complexity 1 29 0 503 240 49 67 chr13 26774306 26774531 -92970367 - MER112 DNA MER1_type -12 248 28 357 268 174 21 chr13 26775262 26775452 -92969446 - L2 LINE L2 -234 3038 2820 429 149 0 81 chr13 26775536 26775623 -92969275 - AluSg/x SINE Alu -12 297 218 33 25 0 0 chr13 26775625 26775665 -92969233 + AT_rich Low_complexity Low_complexity 1 40 0 1895 81 107 11 chr13 26775706 26775978 -92968920 + AluSx SINE Alu 1 298 -14 42 20 0 0 chr13 26776002 26776051 -92968847 + AT_rich Low_complexity Low_complexity 1 49 0 1287 263 37 34 chr13 26776190 26776597 -92968301 + MLT1E2 LTR MaLR 1 408 -218 255 218 21 127 chr13 26776600 26776662 -92968236 + MLT1E2 LTR MaLR 528 540 -86 6863 57 0 1 chr13 26776662 26777787 -92967111 + L1PA6 LINE L1 5030 6154 0 255 218 21 127 chr13 26777787 26777866 -92967032 + MLT1E2 LTR MaLR 540 626 0 610 271 58 34 chr13 26777870 26778077 -92966821 - MLT1J LTR MaLR -292 219 8 2195 117 3 7 chr13 26778119 26778417 -92966481 + AluSx SINE Alu 1 297 -15 320 324 49 14 chr13 26778703 26778845 -92966053 + MIR SINE MIR 49 195 -67 761 253 61 0 chr13 26778960 26779205 -92965693 - MER112 DNA MER1_type 0 260 1 2138 104 11 0 chr13 26779424 26779735 -92965163 - AluY SINE Alu 0 314 1 809 240 161 5 chr13 26779736 26780211 -92964687 + LTR50 LTR ERVL 7 653 -142 1455 95 41 0 chr13 26780212 26780433 -92964465 - MER30 DNA MER1_type 0 230 1 310 264 179 0 chr13 26780543 26780649 -92964249 + AluJo SINE Alu 8 132 -170 520 242 0 64 chr13 26780789 26780946 -92963952 + MLT1F LTR MaLR 1 147 -395 1074 169 17 6 chr13 26780951 26781128 -92963770 - AluJ SINE Alu -14 298 120 853 168 0 0 chr13 26781230 26781355 -92963543 - AluJ SINE Alu -187 125 1 343 224 276 8 chr13 26781577 26781711 -92963187 + MLT1H LTR MaLR 376 545 -4 253 234 0 0 chr13 26781863 26781927 -92962971 - LTR33A LTR ERVL -2 521 458 990 205 0 0 chr13 26782233 26782404 -92962494 + AluJo SINE Alu 136 306 -6 280 270 72 40 chr13 26783533 26783685 -92961213 + L1ME4a LINE L1 5964 6120 -1 2489 74 0 3 chr13 26783691 26784001 -92960897 + AluY SINE Alu 1 309 -2 22 35 0 0 chr13 26784050 26784079 -92960819 + AT_rich Low_complexity Low_complexity 1 29 0 232 310 83 66 chr13 26784490 26784838 -92960060 - L2 LINE L2 -5 3267 2914 282 197 33 0 chr13 26784865 26784926 -92959972 - MLT1D LTR MaLR 0 505 443 2286 112 0 10 chr13 26785047 26785350 -92959548 + AluSq SINE Alu 1 300 -13 676 155 119 68 chr13 26785734 26785924 -92958974 + MLT1D LTR MaLR 308 533 -9 402 364 12 8 chr13 26786068 26786310 -92958588 + MLT1D-int LTR MaLR 290 532 -839 704 211 17 42 chr13 26786858 26787122 -92957776 - AluSg1 SINE Alu 0 307 50 1880 104 0 0 chr13 26787233 26787473 -92957425 - AluSg1 SINE Alu -69 240 1 1021 278 90 24 chr13 26787955 26788483 -92956415 + MLT1G LTR MaLR 3 555 0 1130 216 95 0 chr13 26788487 26788760 -92956138 - MLT1D LTR MaLR 0 505 207 300 102 0 0 chr13 26788765 26788814 -92956084 + (TG)n Simple_repeat Simple_repeat 1 49 0 362 258 0 72 chr13 26788843 26788883 -92956015 - MLT1D LTR MaLR -269 236 195 252 0 0 0 chr13 26788883 26788911 -92955987 + (TA)n Simple_repeat Simple_repeat 1 28 0 2109 126 3 0 chr13 26788912 26789198 -92955700 - AluSq SINE Alu -12 301 15 362 258 0 72 chr13 26789198 26789287 -92955611 - MLT1D LTR MaLR -310 195 117 1869 179 0 0 chr13 26789287 26789583 -92955315 - AluJb SINE Alu -16 296 1 362 258 0 72 chr13 26789583 26789617 -92955281 - MLT1D LTR MaLR -388 117 82 186 143 0 0 chr13 26789627 26789662 -92955236 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 339 238 25 12 chr13 26789664 26789744 -92955154 - MLT1D LTR MaLR -422 83 3 416 255 39 13 chr13 26789767 26789920 -92954978 - L1ME4a LINE L1 -209 5912 5756 691 185 0 20 chr13 26789925 26790071 -92954827 - L1PA16 LINE L1 0 6166 6024 21 0 0 0 chr13 26790333 26790354 -92954544 + GC_rich Low_complexity Low_complexity 1 21 0 823 185 6 6 chr13 26791014 26791369 -92953529 + CT-rich Low_complexity Low_complexity 1 355 0 189 130 19 37 chr13 26791381 26791435 -92953463 + CT-rich Low_complexity Low_complexity 2 54 0 194 0 0 37 chr13 26792072 26792099 -92952799 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 959 91 8 0 chr13 26792143 26792264 -92952634 - AluSg/x SINE Alu -108 202 81 180 0 0 0 chr13 26792886 26792906 -92951992 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 477 335 61 22 chr13 26793013 26793243 -92951655 + MIR SINE MIR 24 262 0 292 291 215 12 chr13 26793816 26793988 -92950910 + MIR SINE MIR 20 226 -36 1144 158 19 10 chr13 26795873 26796082 -92948816 - 7SLRNA srpRNA srpRNA -93 227 17 705 183 16 0 chr13 26796752 26796878 -92948020 + FLAM_A SINE Alu 2 129 -4 900 146 0 6 chr13 26797221 26797581 -92947317 + (TATATG)n Simple_repeat Simple_repeat 3 536 0 706 208 69 135 chr13 26797615 26797764 -92947134 + MIR SINE MIR 2 126 -136 2541 93 0 0 chr13 26797764 26798076 -92946822 + AluSx SINE Alu 1 312 0 706 208 69 135 chr13 26798076 26798200 -92946698 + MIR SINE MIR 126 257 -5 230 162 0 44 chr13 26799080 26799148 -92945750 + L1MB8 LINE L1 6108 6172 -6 623 239 6 80 chr13 26799345 26799521 -92945377 + FRAM SINE Alu 1 163 -13 2024 130 40 0 chr13 26799522 26799821 -92945077 + AluSq SINE Alu 2 312 -1 1089 162 162 59 chr13 26799850 26800121 -92944777 + AluJo SINE Alu 1 299 -3 319 332 91 15 chr13 26800384 26800583 -92944315 + MIR SINE MIR 35 248 -14 1708 164 31 0 chr13 26800586 26800903 -92943995 + L1MB3 LINE L1 5854 6180 -3 3274 181 96 48 chr13 26801384 26802839 -92942059 - MER52A LTR ERV1 -1 1754 1 665 269 35 15 chr13 26802992 26803193 -92941705 - MIR SINE MIR -46 216 12 1202 181 0 5 chr13 26803333 26803526 -92941372 + AluJo SINE Alu 1 192 -120 186 43 0 0 chr13 26804644 26804667 -92940231 + (CTG)n Simple_repeat Simple_repeat 3 25 0 2051 110 11 4 chr13 26805474 26805755 -92939143 + AluSq SINE Alu 1 283 -30 1736 168 30 17 chr13 26805786 26806084 -92938814 + AluJo SINE Alu 1 302 -10 21 36 0 0 chr13 26809957 26809985 -92934913 + GC_rich Low_complexity Low_complexity 1 28 0 910 206 4 69 chr13 26812483 26812716 -92932182 - MIR SINE MIR -3 259 42 443 188 0 0 chr13 26812871 26812951 -92931947 + L1MA7 LINE L1 6060 6139 -152 906 110 17 0 chr13 26813058 26813231 -92931667 + (TA)n Simple_repeat Simple_repeat 1 176 0 200 176 0 0 chr13 26813235 26813269 -92931629 + (CA)n Simple_repeat Simple_repeat 1 34 0 319 279 140 0 chr13 26813358 26813494 -92931404 - MIR SINE MIR -13 249 95 2202 199 5 95 chr13 26814069 26814216 -92930682 - L1MA5 LINE L1 0 6300 6141 2105 104 0 3 chr13 26814216 26814505 -92930393 - AluSx SINE Alu -24 288 1 2202 199 5 95 chr13 26814505 26814898 -92930000 - L1MA5 LINE L1 -159 6141 5819 2002 131 0 0 chr13 26814898 26815189 -92929709 + AluSq SINE Alu 11 301 -12 2202 199 5 95 chr13 26815189 26815259 -92929639 - L1MA5 LINE L1 -481 5819 5744 2023 118 21 0 chr13 26815369 26815658 -92929240 + AluSx SINE Alu 3 297 -15 484 322 59 7 chr13 26815970 26816270 -92928628 - L1MC/D LINE L1 -482 5639 5318 765 186 0 0 chr13 26816292 26816416 -92928482 + AluJo SINE Alu 2 125 -187 333 0 0 0 chr13 26816621 26816658 -92928240 + (TG)n Simple_repeat Simple_repeat 2 38 0 1864 128 26 26 chr13 26817045 26817357 -92927541 - AluSx SINE Alu 0 312 1 2094 108 0 26 chr13 26817886 26818191 -92926707 + AluSg SINE Alu 1 297 -13 784 218 0 50 chr13 26818191 26818359 -92926539 + AluJo SINE Alu 126 286 -26 1849 110 22 0 chr13 26818414 26818716 -92926182 + AluSq SINE Alu 11 318 0 426 310 57 38 chr13 26818991 26819149 -92925749 + MIR SINE MIR 50 210 -52 1257 183 30 33 chr13 26819172 26819472 -92925426 - AluJo SINE Alu -13 299 1 2015 116 3 13 chr13 26820011 26820322 -92924576 - AluSq SINE Alu -5 308 1 862 221 5 0 chr13 26820512 26820702 -92924196 - AluJo SINE Alu -4 308 118 1565 188 0 14 chr13 26821116 26821404 -92923494 - AluJb SINE Alu -28 284 1 396 304 0 0 chr13 26821662 26821754 -92923144 - L2 LINE L2 -6 3266 3175 478 288 26 79 chr13 26871965 26872232 -92872666 - L2 LINE L2 -348 2966 2714 662 240 51 51 chr13 26872237 26872433 -92872465 + MER20 DNA MER1_type 24 219 0 865 232 11 5 chr13 26872440 26872630 -92872268 - L2 LINE L2 -603 2711 2521 2198 117 3 0 chr13 26872630 26872928 -92871970 + AluSg SINE Alu 1 299 -11 258 314 39 101 chr13 26873098 26873305 -92871593 + L2 LINE L2 328 521 -2793 1968 125 55 0 chr13 26873316 26873444 -92871454 + AluSx SINE Alu 1 120 -192 2318 103 3 0 chr13 26873444 26873744 -92871154 + AluSq SINE Alu 1 301 -12 1968 125 55 0 chr13 26873744 26873904 -92870994 + AluSx SINE Alu 120 305 -7 268 250 109 83 chr13 26873939 26874140 -92870758 - L1ME4a LINE L1 -59 6062 5868 2238 68 0 48 chr13 26874140 26874472 -92870426 + AluY SINE Alu 1 318 0 2325 108 0 0 chr13 26874473 26874770 -92870128 + AluSx SINE Alu 1 297 -15 268 250 109 83 chr13 26874770 26874877 -92870021 - L1ME4a LINE L1 -252 5869 5743 2096 115 30 0 chr13 26874892 26875188 -92869710 - AluSp SINE Alu -7 306 2 2294 103 0 0 chr13 26875189 26875479 -92869419 - AluSg SINE Alu -20 290 1 747 182 8 0 chr13 26875539 26875671 -92869227 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr13 26876210 26876232 -92868666 + AT_rich Low_complexity Low_complexity 1 22 0 1856 147 6 16 chr13 26876457 26876770 -92868128 - AluJo SINE Alu -2 310 1 418 317 35 7 chr13 26877853 26877998 -92866900 + MLT1F1 LTR MaLR 14 162 -431 1072 154 65 25 chr13 26878019 26878220 -92866678 + AluJo SINE Alu 85 293 -19 448 100 67 44 chr13 26878220 26878310 -92866588 + LTR9 LTR ERV1 435 526 -86 254 28 0 28 chr13 26878316 26878352 -92866546 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1370 143 0 14 chr13 26878359 26878575 -92866323 + AluJb SINE Alu 82 294 -18 1234 231 75 32 chr13 26878604 26878886 -92866012 + MLT1F1 LTR MaLR 202 503 -64 2308 102 0 0 chr13 26878886 26879179 -92865719 - AluSx SINE Alu -19 293 1 1234 231 75 32 chr13 26879179 26879242 -92865656 + MLT1F1 LTR MaLR 503 562 -5 180 176 0 0 chr13 26879258 26879292 -92865606 + CT-rich Low_complexity Low_complexity 1 34 0 1828 94 106 8 chr13 26879292 26879557 -92865341 - AluSc SINE Alu -18 291 1 307 191 0 0 chr13 26879557 26879620 -92865278 + MLT1F1 LTR MaLR 500 562 -5 1601 90 98 37 chr13 26879625 26879898 -92865000 - AluSc SINE Alu 0 309 30 2214 96 7 3 chr13 26880085 26880377 -92864521 + AluSc SINE Alu 1 293 -16 334 156 0 0 chr13 26880388 26880447 -92864451 - AluSc SINE Alu -250 50 3 1036 262 166 55 chr13 26880449 26881187 -92863711 - L2 LINE L2 0 3313 2658 1763 154 10 7 chr13 26881187 26881479 -92863419 - AluJb SINE Alu -1 311 19 1036 262 166 55 chr13 26881479 26881514 -92863384 - L2 LINE L2 -655 2658 2628 2337 78 10 3 chr13 26881514 26881820 -92863078 - AluY SINE Alu -3 308 1 1036 262 166 55 chr13 26881820 26882095 -92862803 - L2 LINE L2 -685 2628 2139 989 151 58 10 chr13 26882302 26882508 -92862390 - MER69 DNA AcHobo -1 2525 2310 2187 123 0 7 chr13 26882564 26882873 -92862025 - AluSc SINE Alu -1 308 2 790 30 0 10 chr13 26883034 26883133 -92861765 + L1MB2 LINE L1 6030 6127 -44 2107 115 3 42 chr13 26883136 26883448 -92861450 + AluSc SINE Alu 1 300 -9 2379 89 3 0 chr13 26883460 26883752 -92861146 + AluSq SINE Alu 1 293 -20 3515 69 22 47 chr13 26883761 26883876 -92861022 + L1PA11 LINE L1 5672 5788 -386 2129 113 0 7 chr13 26883876 26884186 -92860712 + AluSg SINE Alu 1 308 0 3515 69 22 47 chr13 26884186 26884346 -92860552 + L1PA11 LINE L1 5788 5951 -223 2384 72 3 10 chr13 26884346 26884651 -92860247 + AluSp SINE Alu 2 304 -9 3515 69 22 47 chr13 26884651 26884881 -92860017 + L1PA11 LINE L1 5951 6166 -8 22 35 0 0 chr13 26884881 26884910 -92859988 + AT_rich Low_complexity Low_complexity 1 29 0 2388 50 0 57 chr13 26884922 26885240 -92859658 + AluY SINE Alu 1 300 -11 198 0 0 0 chr13 26885256 26885278 -92859620 + (A)n Simple_repeat Simple_repeat 1 22 0 839 110 47 0 chr13 26885285 26885412 -92859486 + AluSq/x SINE Alu 1 133 -180 2575 74 0 0 chr13 26885416 26885725 -92859173 + AluSg1 SINE Alu 1 309 0 738 183 0 0 chr13 26885736 26885856 -92859042 + L1PA16 LINE L1 5817 5936 -230 2335 72 17 0 chr13 26885856 26886148 -92858750 + AluSx SINE Alu 1 297 -15 485 117 117 36 chr13 26886151 26886262 -92858636 - LTR49 LTR ERV1 -60 535 416 * 659 168 161 19 chr13 26886256 26886538 -92858360 - LTR29 LTR ERV1 -198 424 62 681 185 15 73 chr13 26886560 26886651 -92858247 - L1M4 LINE L1 -730 5448 5353 1696 155 57 10 chr13 26886651 26886947 -92857951 - AluJb SINE Alu -2 310 1 681 185 15 73 chr13 26886947 26887060 -92857838 - L1M4 LINE L1 -825 5353 5256 307 122 41 0 chr13 26887124 26887173 -92857725 + AluJ/FRAM SINE Alu 233 283 -19 2439 97 0 0 chr13 26887215 26887524 -92857374 + AluSx SINE Alu 1 309 -3 967 217 21 0 chr13 26887533 26887722 -92857176 + AluJo SINE Alu 98 290 -22 1885 158 20 0 chr13 26887737 26888029 -92856869 - AluJb SINE Alu -14 298 1 226 73 0 182 chr13 26888062 26888086 -92856812 - L1M4 LINE L1 -3736 2410 2400 2098 87 49 7 chr13 26888086 26888372 -92856526 + AluSc SINE Alu 1 298 -11 226 73 0 182 chr13 26888372 26888402 -92856496 - L1M4 LINE L1 -3746 2400 2366 1272 283 48 8 chr13 26888479 26888871 -92856027 + MLT1G1 LTR MaLR 1 408 -187 189 147 0 0 chr13 26888891 26888925 -92855973 + (A)n Simple_repeat Simple_repeat 1 34 0 363 224 50 45 chr13 26888967 26889115 -92855783 + MLT1G1 LTR MaLR 450 593 -2 251 295 116 9 chr13 26889247 26889359 -92855539 + HERVL-F LTR ERVL 4908 5031 -623 1298 166 0 9 chr13 26889364 26889575 -92855323 + AluJo SINE Alu 86 294 -18 1048 233 52 0 chr13 26889577 26889826 -92855072 + HERVL-F LTR ERVL 5069 5330 -434 3225 179 16 9 chr13 26889827 26890403 -92854495 - MER6A DNA MER2_type 0 605 26 304 167 174 45 chr13 26890614 26890746 -92854152 + HERVL-F LTR ERVL 5595 5743 -21 531 269 7 14 chr13 26890751 26890892 -92854006 + MLT2F LTR ERVL 1 140 -523 615 281 152 44 chr13 26890971 26891313 -92853585 + MLT2F LTR ERVL 277 655 -8 2061 123 3 25 chr13 26891840 26892157 -92852741 - AluSx SINE Alu -2 310 1 1625 197 0 14 chr13 26892184 26892342 -92852556 - AluJo SINE Alu -21 291 137 2070 125 0 7 chr13 26892342 26892638 -92852260 - AluSx SINE Alu -18 294 1 1625 197 0 14 chr13 26892638 26892774 -92852124 - AluJo SINE Alu -175 137 1 25 31 0 0 chr13 26893060 26893092 -92851806 + AT_rich Low_complexity Low_complexity 1 32 0 744 176 0 0 chr13 26893118 26893243 -92851655 + FLAM_A SINE Alu 18 142 0 1687 165 33 0 chr13 26893247 26893544 -92851354 + AluJo SINE Alu 1 306 0 2491 63 3 0 chr13 26893729 26894029 -92850869 + AluSx SINE Alu 1 301 -11 2073 105 3 49 chr13 26894568 26894872 -92850026 - AluSx SINE Alu -22 290 1 1307 179 47 21 chr13 26895138 26895417 -92849481 - AluJb SINE Alu -15 297 12 2191 112 0 3 chr13 26895525 26895812 -92849086 - AluSx SINE Alu -26 286 1 1357 199 13 23 chr13 26896101 26896403 -92848495 - AluJo SINE Alu -13 299 1 2310 85 17 3 chr13 26896460 26896753 -92848145 - AluSg SINE Alu -13 297 1 2199 89 7 7 chr13 26896897 26897188 -92847710 - AluSx SINE Alu -21 291 1 252 289 100 0 chr13 26897262 26897352 -92847546 - MIR SINE MIR -90 172 74 210 202 11 138 chr13 26897579 26897673 -92847225 + L2 LINE L2 3232 3313 0 206 269 0 19 chr13 26898319 26898371 -92846527 + G-rich Low_complexity Low_complexity 6 56 0 214 330 0 19 chr13 26899136 26899239 -92845659 + CT-rich Low_complexity Low_complexity 4 104 0 363 23 0 0 chr13 26899508 26899552 -92845346 + (TG)n Simple_repeat Simple_repeat 2 45 0 1553 142 8 26 chr13 26899924 26900219 -92844679 - AluSx SINE Alu 0 312 32 827 150 0 0 chr13 26900549 26900682 -92844216 - FLAM_C SINE Alu 0 133 1 182 174 22 0 chr13 26900690 26900736 -92844162 + T-rich Low_complexity Low_complexity 2 48 0 2313 80 7 3 chr13 26901004 26901304 -92843594 - AluSx SINE Alu -11 301 1 2196 98 26 0 chr13 26901455 26901760 -92843138 - AluSp SINE Alu 0 313 1 728 200 8 0 chr13 26902336 26902466 -92842432 - FLAM_C SINE Alu -11 132 2 21 0 0 0 chr13 26902510 26902531 -92842367 + AT_rich Low_complexity Low_complexity 1 21 0 620 175 0 25 chr13 26902537 26902657 -92842241 - AluJb SINE Alu -145 167 51 649 163 0 59 chr13 26903103 26903238 -92841660 - FLAM_A SINE Alu 0 142 16 326 210 90 20 chr13 26903532 26903632 -92841266 + MIR SINE MIR 41 147 -115 256 264 35 11 chr13 26904079 26904166 -92840732 - L2 LINE L2 -39 3274 3186 2563 55 7 3 chr13 26904205 26904515 -92840383 - AluY SINE Alu 0 311 1 272 154 0 0 chr13 26904613 26904652 -92840246 - 5S rRNA rRNA -82 39 1 2099 114 17 0 chr13 26904719 26905018 -92839880 - AluSg SINE Alu -6 304 1 647 230 98 10 chr13 26905063 26905267 -92839631 - L1MD2 LINE L1 -3 6356 6135 1931 147 0 32 chr13 26905315 26905627 -92839271 - AluSx SINE Alu -10 302 1 411 253 0 0 chr13 26905671 26905758 -92839140 - AluJo/F(R)AM SINE Alu -92 220 134 2027 116 30 26 chr13 26905758 26906061 -92838837 - AluSx SINE Alu -8 304 1 258 169 0 31 chr13 26906219 26906284 -92838614 + (TA)n Simple_repeat Simple_repeat 2 64 0 279 54 0 0 chr13 26906290 26906327 -92838571 + (TC)n Simple_repeat Simple_repeat 1 37 0 418 198 99 0 chr13 26906419 26906520 -92838378 - MLT1B LTR MaLR -39 351 241 1252 178 38 8 chr13 26906541 26906696 -92838202 - MER7A DNA MER2_type -2782 256 92 2115 114 6 29 chr13 26906696 26907012 -92837886 + AluSc SINE Alu 1 309 0 1252 178 38 8 chr13 26907012 26907092 -92837806 - MER7A DNA MER2_type -2946 92 16 232 146 24 0 chr13 26907311 26907352 -92837546 + MER47B DNA MER2_type 13 54 -364 1923 209 52 8 chr13 26907394 26907782 -92837116 - MER47B DNA MER2_type -12 406 2 1753 176 20 0 chr13 26907954 26908250 -92836648 - AluJo SINE Alu -10 302 1 874 204 0 0 chr13 26908294 26908446 -92836452 - FRAM SINE Alu -23 153 2 27 0 0 0 chr13 26908446 26908473 -92836425 + AT_rich Low_complexity Low_complexity 1 27 0 294 301 44 0 chr13 26908519 26908632 -92836266 - HAL1 LINE L1 -13 2494 2377 347 296 88 6 chr13 26908774 26908933 -92835965 - L1MC4a LINE L1 -1926 5882 5711 1578 168 55 34 chr13 26909077 26909369 -92835529 + AluJb SINE Alu 5 302 -10 1546 189 10 32 chr13 26909610 26909922 -92834976 - AluJo SINE Alu -7 305 1 2478 55 0 39 chr13 26910344 26910655 -92834243 + AluY SINE Alu 1 299 -12 657 281 45 72 chr13 26910749 26911123 -92833775 - L2 LINE L2 0 3313 2950 1477 251 107 27 chr13 26911184 26911234 -92833664 - L2 LINE L2 -575 2739 2694 2362 92 0 0 chr13 26911234 26911527 -92833371 + AluY SINE Alu 1 293 -18 1477 251 107 27 chr13 26911527 26911999 -92832899 - L2 LINE L2 -620 2694 2175 2206 114 10 0 chr13 26912302 26912610 -92832288 + AluSq SINE Alu 1 311 -2 250 287 168 34 chr13 26912712 26913233 -92831665 + L1ME4a LINE L1 5298 5991 -130 2205 112 0 10 chr13 26913233 26913537 -92831361 - AluSc SINE Alu -8 301 1 250 287 168 34 chr13 26913537 26913689 -92831209 + L1ME4a LINE L1 5991 6121 0 2166 134 0 3 chr13 26914489 26914796 -92830102 - AluSq SINE Alu -7 306 1 2386 46 39 26 chr13 26914809 26915115 -92829783 - AluY SINE Alu 0 311 2 1920 126 26 10 chr13 26915314 26915616 -92829282 + AluSx SINE Alu 1 307 -5 188 159 0 23 chr13 26915698 26915742 -92829156 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 11222 191 57 33 chr13 26916032 26916712 -92828186 + L1PA15 LINE L1 3106 3768 -2397 1702 179 10 7 chr13 26916712 26917020 -92827878 + AluJb SINE Alu 1 309 -3 11222 191 57 33 chr13 26917020 26918596 -92826302 + L1PA15 LINE L1 3768 5305 -860 2436 74 0 3 chr13 26918596 26918894 -92826004 + AluY SINE Alu 1 297 -14 11222 191 57 33 chr13 26918894 26919451 -92825447 + L1PA15 LINE L1 5305 5980 -185 2223 104 3 3 chr13 26919451 26919748 -92825150 - AluSp SINE Alu -16 297 1 11222 191 57 33 chr13 26919748 26919924 -92824974 + L1PA15 LINE L1 5980 6150 -15 2110 120 3 25 chr13 26919925 26920242 -92824656 - AluSx SINE Alu -2 310 1 2190 176 41 22 chr13 26921203 26921619 -92823279 - MLT1C LTR MaLR -43 424 1 21 36 0 0 chr13 26921941 26921969 -92822929 + AT_rich Low_complexity Low_complexity 1 28 0 293 338 121 6 chr13 26922118 26922275 -92822623 - MIR SINE MIR -83 179 5 196 245 0 20 chr13 26922349 26922398 -92822500 + MIR SINE MIR 100 147 -61 1705 114 153 4 chr13 26922404 26922659 -92822239 + AluSx SINE Alu 2 294 -8 902 194 19 7 chr13 26922698 26922853 -92822045 + FRAM SINE Alu 1 157 -9 519 160 0 0 chr13 26922975 26923050 -92821848 + AluJo SINE Alu 2 76 -236 620 191 0 0 chr13 26923052 26923146 -92821752 - AluJb SINE Alu -20 292 199 315 89 107 18 chr13 26923146 26923202 -92821696 + AluJo SINE Alu 76 136 -166 486 314 67 22 chr13 26923424 26923647 -92821251 - MIR SINE MIR -21 241 9 927 163 39 28 chr13 26923918 26924096 -92820802 + AluYa5 SINE Alu 112 291 -20 337 239 33 19 chr13 26924098 26924239 -92820659 - L1MB7 LINE L1 -5 6179 6037 265 322 0 0 chr13 26924303 26924362 -92820536 - MIR SINE MIR -156 106 48 384 219 75 62 chr13 26924571 26924731 -92820167 - MER103 DNA DNA -1 165 4 2235 106 3 0 chr13 26924913 26925206 -92819692 - AluSg SINE Alu -16 294 1 864 154 0 22 chr13 26925287 26925423 -92819475 - FLAM_C SINE Alu 0 133 1 300 294 101 0 chr13 26925480 26925589 -92819309 + MIR SINE MIR 59 178 -84 1476 208 27 53 chr13 26925642 26926017 -92818881 - MLT1A1 LTR MaLR 0 365 1 4699 209 65 105 chr13 26926017 26927083 -92817815 - MLT1A1-int LTR MaLR 0 1735 628 439 77 31 0 chr13 26927083 26927148 -92817750 - FLAM_C SINE Alu -4 139 73 4699 209 65 105 chr13 26927148 26927204 -92817694 - MLT1A1-int LTR MaLR -1107 628 571 1533 117 144 16 chr13 26927204 26927461 -92817437 - AluSg1 SINE Alu -19 290 1 4699 209 65 105 chr13 26927461 26927555 -92817343 - MLT1A1-int LTR MaLR -1164 571 512 1717 172 13 23 chr13 26927555 26927863 -92817035 + AluJb SINE Alu 1 305 -7 4699 209 65 105 chr13 26927863 26927984 -92816914 - MLT1A1-int LTR MaLR -1223 512 388 812 150 48 27 chr13 26927994 26928141 -92816757 - MLT1A1 LTR MaLR -215 150 1 1244 167 46 5 chr13 26928162 26928378 -92816520 - MER46A DNA MER2_type 0 236 12 2252 107 7 0 chr13 26928439 26928728 -92816170 + AluSx SINE Alu 3 293 -19 2360 82 7 0 chr13 26928737 26929029 -92815869 + AluY SINE Alu 1 294 -17 273 75 0 0 chr13 26929207 26929247 -92815651 + (T)n Simple_repeat Simple_repeat 1 40 0 991 173 0 53 chr13 26929363 26929571 -92815327 - AluJo SINE Alu -103 209 13 212 391 0 0 chr13 26929723 26929792 -92815106 - L2 LINE L2 -62 3251 3183 745 167 0 0 chr13 26930026 26930134 -92814764 + FLAM_C SINE Alu 18 125 -18 322 173 31 44 chr13 26930310 26930570 -92814328 + AluJo SINE Alu 7 299 -3 1892 129 26 26 chr13 26931460 26931736 -92813162 + AluSx SINE Alu 1 279 -33 396 0 0 0 chr13 26931736 26931780 -92813118 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1892 129 26 26 chr13 26931780 26931813 -92813085 + AluSx SINE Alu 278 310 -2 314 219 196 58 chr13 26931822 26932082 -92812816 + L1ME4a LINE L1 5745 6040 -81 231 174 486 9 chr13 26932131 26932240 -92812658 + MIR SINE MIR 84 244 -18 230 204 74 28 chr13 26933171 26933279 -92811619 + L1MC4 LINE L1 7813 8042 0 804 153 16 0 chr13 26933293 26933417 -92811481 + FLAM_A SINE Alu 3 128 -5 2089 83 0 107 chr13 26933419 26933755 -92811143 + AluSg SINE Alu 1 300 -10 2357 95 0 13 chr13 26933756 26934071 -92810827 + AluSx SINE Alu 1 311 -1 2235 99 20 3 chr13 26935167 26935459 -92809439 + AluSx SINE Alu 1 297 -15 180 0 0 0 chr13 26935524 26935544 -92809354 + (A)n Simple_repeat Simple_repeat 1 20 0 963 190 67 10 chr13 26935546 26935741 -92809157 + MER20 DNA MER1_type 14 219 0 1639 143 23 97 chr13 26935997 26936182 -92808716 - MER33 DNA MER1_type -2261 324 176 1877 165 7 0 chr13 26936182 26936485 -92808413 - AluJb SINE Alu -7 305 1 1639 143 23 97 chr13 26936485 26936649 -92808249 - MER33 DNA MER1_type -2409 176 1 418 322 26 13 chr13 26936666 26936818 -92808080 - MER5A DNA MER1_type -29 160 7 2033 150 0 6 chr13 26937017 26937330 -92807568 + AluJb SINE Alu 1 311 -1 351 305 93 20 chr13 26938614 26938765 -92806133 - L2 LINE L2 -12 3301 3140 205 213 0 27 chr13 26940091 26940166 -92804732 + A-rich Low_complexity Low_complexity 3 75 0 911 223 86 9 chr13 26940530 26940763 -92804135 - MIR SINE MIR -10 252 2 2340 109 0 0 chr13 26940815 26941126 -92803772 - AluSx SINE Alu -1 311 1 2526 57 0 7 chr13 26941137 26941435 -92803463 - AluY SINE Alu -15 296 1 2291 108 0 9 chr13 26941669 26941985 -92802913 - AluSq SINE Alu 0 313 1 356 309 41 55 chr13 26942712 26942764 -92802134 - L3 LINE CR1 -20 1557 1506 207 0 0 0 chr13 26942764 26942787 -92802111 + (CA)n Simple_repeat Simple_repeat 1 23 0 356 309 41 55 chr13 26942787 26942954 -92801944 - L3 LINE CR1 -71 1506 1341 479 282 44 26 chr13 26943217 26943444 -92801454 - L1ME3A LINE L1 -208 5962 5732 923 158 25 19 chr13 26943459 26943617 -92801281 - AluJb SINE Alu -29 283 125 706 291 89 11 chr13 26943628 26943910 -92800988 - L1ME3A LINE L1 -464 5706 5403 523 186 0 0 chr13 26943918 26944004 -92800894 + MER93b LTR ERV1 1 86 -287 953 89 0 0 chr13 26944029 26944153 -92800745 + FLAM_C SINE Alu 1 124 -19 1090 192 144 19 chr13 26944173 26944444 -92800454 + MER93b LTR ERV1 69 373 0 313 312 0 64 chr13 26944612 26944769 -92800129 - L3 LINE CR1 -185 1392 1246 694 268 218 9 chr13 26944880 26945197 -92799701 - L3 LINE CR1 -333 1244 862 214 208 0 42 chr13 26945374 26945422 -92799476 + GA-rich Low_complexity Low_complexity 3 48 0 1292 149 5 28 chr13 26946289 26946503 -92798395 - MER3 DNA MER1_type 0 209 1 476 235 100 71 chr13 26946511 26946680 -92798218 - MIR SINE MIR -62 146 2 2187 119 3 10 chr13 26947347 26947658 -92797240 + AluSq SINE Alu 1 309 -4 843 129 0 57 chr13 26947667 26947807 -92797091 + FLAM_C SINE Alu 2 133 0 2250 89 11 0 chr13 26947822 26948134 -92796764 + AluSp SINE Alu 1 315 0 396 276 184 7 chr13 26948169 26948321 -92796577 + MER5A DNA MER1_type 11 189 0 717 227 20 0 chr13 26948467 26948617 -92796281 + AluJo SINE Alu 18 170 -142 22 0 0 0 chr13 26949238 26949260 -92795638 + AT_rich Low_complexity Low_complexity 1 22 0 2083 120 0 10 chr13 26949269 26949603 -92795295 + AluSc SINE Alu 1 309 0 2006 111 0 83 chr13 26949702 26950026 -92794872 + AluSx SINE Alu 1 297 -15 207 100 0 0 chr13 26950056 26950086 -92794812 + (A)n Simple_repeat Simple_repeat 1 30 0 1289 136 86 58 chr13 26950177 26950192 -92794706 - L1MC2 LINE L1 -8 6336 6323 2124 113 3 3 chr13 26950192 26950494 -92794404 - AluSx SINE Alu -10 302 1 1289 136 86 58 chr13 26950494 26950663 -92794235 - L1MC2 LINE L1 -21 6323 6141 2000 132 0 0 chr13 26950663 26950936 -92793962 + AluSx SINE Alu 1 273 -39 1289 136 86 58 chr13 26950936 26951007 -92793891 - L1MC2 LINE L1 -203 6141 6073 1750 164 0 17 chr13 26951073 26951372 -92793526 + AluJb SINE Alu 1 294 -18 1893 119 48 104 chr13 26951897 26952050 -92792848 + MLT1B LTR MaLR 16 176 -214 2077 117 3 3 chr13 26952050 26952349 -92792549 + AluSq SINE Alu 1 299 -14 1893 119 48 104 chr13 26952349 26952589 -92792309 + MLT1B LTR MaLR 176 387 -3 2179 104 0 3 chr13 26952786 26953073 -92791825 + AluSx SINE Alu 1 286 -26 198 0 0 0 chr13 26953073 26953095 -92791803 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 863 173 0 0 chr13 26953580 26953707 -92791191 + FLAM_A SINE Alu 1 127 -6 3538 203 57 52 chr13 26953761 26953882 -92791016 + L1MC4a LINE L1 5256 5375 -2433 2226 111 0 0 chr13 26953882 26954180 -92790718 + AluSg1 SINE Alu 1 298 -11 3538 203 57 52 chr13 26954180 26954949 -92789949 + L1MC4a LINE L1 5375 6139 -1669 1986 147 0 0 chr13 26954949 26955272 -92789626 + AluJo SINE Alu 1 323 0 1037 153 174 116 chr13 26955272 26955421 -92789477 + AluJo SINE Alu 3 142 -160 225 0 0 0 chr13 26955421 26955446 -92789452 + (TAA)n Simple_repeat Simple_repeat 1 25 0 1037 153 174 116 chr13 26955446 26955571 -92789327 + AluJo SINE Alu 142 293 -9 3538 203 57 52 chr13 26955571 26956642 -92788256 + L1MC4a LINE L1 6138 7403 -405 2017 93 11 4 chr13 26956642 26956912 -92787986 - AluSp SINE Alu -41 272 1 206 122 0 20 chr13 26957610 26957659 -92787239 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 404 93 0 0 chr13 26957920 26957974 -92786924 + MSTB LTR MaLR 1 54 -372 845 109 8 31 chr13 26957974 26958102 -92786796 + AluSq/x SINE Alu 1 125 -188 353 137 0 0 chr13 26958146 26958197 -92786701 + Alu SINE Alu 2 52 -250 1604 149 0 41 chr13 26958197 26958466 -92786432 - AluJb SINE Alu -54 258 1 330 368 134 9 chr13 26958586 26959040 -92785858 - L2 LINE L2 -439 2875 2365 2104 108 14 89 chr13 26959176 26959421 -92785477 - MER2 DNA MER2_type 0 344 135 1783 164 7 3 chr13 26959421 26959707 -92785191 + AluJb SINE Alu 1 287 -25 2104 108 14 89 chr13 26959707 26959832 -92785066 - MER2 DNA MER2_type -209 135 2 775 172 0 0 chr13 26960389 26960517 -92784381 + MER3 DNA MER1_type 1 128 -81 2244 85 0 47 chr13 26960581 26960899 -92783999 - AluSx SINE Alu -9 303 1 833 219 70 32 chr13 26960910 26961240 -92783658 - HAL1 LINE L1 -1045 1462 748 313 188 62 0 chr13 26961241 26961305 -92783593 - HAL1 LINE L1 -1803 704 637 309 288 131 12 chr13 26961349 26961430 -92783468 - HAL1 LINE L1 -2238 269 199 761 196 8 15 chr13 26961430 26961563 -92783335 - FLAM_C SINE Alu 0 133 2 309 288 131 12 chr13 26961563 26961641 -92783257 - HAL1 LINE L1 -2308 199 91 249 158 12 122 chr13 26961651 26961733 -92783165 - L1MA9 LINE L1 -12 6300 6228 * 319 163 25 0 chr13 26961722 26961803 -92783095 + (TA)n Simple_repeat Simple_repeat 1 83 0 476 143 7 143 chr13 26961852 26961968 -92782930 - L1MA9 LINE L1 -74 6238 6108 183 42 0 0 chr13 26961968 26961992 -92782906 + (TC)n Simple_repeat Simple_repeat 2 25 0 1912 147 3 10 chr13 26961992 26962285 -92782613 - AluSx SINE Alu -21 291 1 476 143 7 143 chr13 26962285 26962307 -92782591 - L1MA9 LINE L1 -171 6141 6118 1521 91 5 14 chr13 26962342 26962551 -92782347 - AluY SINE Alu -31 280 74 264 311 0 33 chr13 26962698 26962788 -92782110 + HAL1 LINE L1 810 896 -1611 * 766 186 49 20 chr13 26962775 26962979 -92781919 + HAL1 LINE L1 1253 1462 -1045 2422 65 3 10 chr13 26962990 26963299 -92781599 + AluY SINE Alu 1 307 -4 1581 193 0 29 chr13 26963327 26963638 -92781260 + AluJb SINE Alu 1 302 -10 245 264 91 18 chr13 26963800 26963910 -92780988 - L1MA10 LINE L1 -4 6330 6213 1875 155 3 19 chr13 26963921 26964238 -92780660 + AluJo SINE Alu 1 312 0 2855 200 25 66 chr13 26964253 26964898 -92780000 - L1ME1 LINE L1 -106 6129 5522 1705 174 30 7 chr13 26964898 26965202 -92779696 - AluJb SINE Alu -1 311 1 2855 200 25 66 chr13 26965202 26965355 -92779543 - L1ME1 LINE L1 -713 5522 5364 577 98 98 36 chr13 26965360 26965472 -92779426 - L1MA9 LINE L1 -12 6300 6182 490 32 18 0 chr13 26965472 26965545 -92779353 - L1P4 LINE L1 -737 5437 5357 1084 99 7 0 chr13 26965545 26965697 -92779201 + L1MA4A LINE L1 6146 6298 -5 2261 112 0 0 chr13 26965711 26966005 -92778893 + AluSx SINE Alu 1 294 -18 300 162 40 121 chr13 26966008 26966070 -92778828 - L1MA8 LINE L1 -106 6185 6132 2114 125 0 3 chr13 26966070 26966365 -92778533 - AluSx SINE Alu -18 294 1 300 162 40 121 chr13 26966365 26966401 -92778497 - L1MA8 LINE L1 -159 6132 6095 1427 169 28 106 chr13 26966548 26966908 -92777990 - MLT2B3 LTR ERVL 0 554 223 1882 135 4 4 chr13 26966936 26967196 -92777702 + AluJb SINE Alu 23 282 -30 636 171 22 28 chr13 26967227 26967408 -92777490 + GA-rich Low_complexity Low_complexity 1 180 0 1824 165 47 60 chr13 26967417 26967513 -92777385 - MSTB1 LTR MaLR -55 377 281 2858 68 0 66 chr13 26967513 26967893 -92777005 - THE1A LTR MaLR 0 355 1 12591 87 4 6 chr13 26967893 26968973 -92775925 - THE1A-int LTR MaLR 0 1580 504 2258 121 0 0 chr13 26968973 26969280 -92775618 - AluSg SINE Alu -3 307 1 12591 87 4 6 chr13 26969280 26969783 -92775115 - THE1A-int LTR MaLR -1076 504 1 3005 73 3 0 chr13 26969783 26970137 -92774761 - THE1A LTR MaLR 0 355 1 1824 165 47 60 chr13 26970137 26970362 -92774536 - MSTB1 LTR MaLR -149 283 57 2244 112 0 0 chr13 26970362 26970666 -92774232 + AluSx SINE Alu 1 304 -8 1824 165 47 60 chr13 26970666 26970723 -92774175 - MSTB1 LTR MaLR -375 57 1 446 122 68 0 chr13 26970723 26970797 -92774101 - L1MA7 LINE L1 -188 6103 6025 * 4853 231 67 52 chr13 26970790 26972113 -92772785 - L1ME1 LINE L1 -845 5370 4069 2209 123 7 0 chr13 26972113 26972423 -92772475 - AluSx SINE Alu 0 312 1 4853 231 67 52 chr13 26972423 26972438 -92772460 - L1ME1 LINE L1 -2146 4069 4056 1519 188 0 41 chr13 26972438 26972731 -92772167 - AluJo SINE Alu -31 281 1 4853 231 67 52 chr13 26972731 26972771 -92772127 - L1ME1 LINE L1 -2159 4056 4018 1618 166 0 46 chr13 26972771 26972939 -92771959 - AluJb SINE Alu -19 293 119 441 0 0 0 chr13 26972939 26972988 -92771910 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2319 73 0 11 chr13 26972988 26973274 -92771624 - AluY SINE Alu -28 283 1 1618 166 0 46 chr13 26973274 26973411 -92771487 - AluJb SINE Alu -191 121 1 4853 231 67 52 chr13 26973411 26974305 -92770593 - L1ME1 LINE L1 -2197 4018 3159 1134 200 5 9 chr13 26974342 26974552 -92770346 - AluJo SINE Alu -94 218 10 36 0 0 0 chr13 26974568 26974604 -92770294 + AT_rich Low_complexity Low_complexity 1 36 0 935 174 40 30 chr13 26974627 26974828 -92770070 - AluJb SINE Alu -10 302 100 325 113 0 81 chr13 26974832 26974894 -92770004 - AluJb SINE Alu -160 142 86 4748 239 45 62 chr13 26974897 26974962 -92769936 - L1ME1 LINE L1 -3329 2886 2821 2640 33 0 0 chr13 26974962 26975262 -92769636 + AluY SINE Alu 1 300 -11 4748 239 45 62 chr13 26975262 26975332 -92769566 - L1ME1 LINE L1 -3394 2821 2751 2179 107 10 3 chr13 26975332 26975642 -92769256 + AluSx SINE Alu 1 312 0 4748 239 45 62 chr13 26975642 26976099 -92768799 - L1ME1 LINE L1 -3464 2751 2288 852 181 0 0 chr13 26976099 26976226 -92768672 + FLAM_C SINE Alu 1 127 -6 4748 239 45 62 chr13 26976226 26976888 -92768010 - L1ME1 LINE L1 -3927 2288 1616 396 0 0 0 chr13 26976888 26976932 -92767966 + (TG)n Simple_repeat Simple_repeat 2 45 0 1893 151 4 0 chr13 26976932 26977211 -92767687 - AluSx SINE Alu -28 284 5 4748 239 45 62 chr13 26977211 26977364 -92767534 - L1ME1 LINE L1 -4598 1617 1463 1481 181 0 0 chr13 26977364 26977602 -92767296 - AluJo SINE Alu -38 274 37 4748 239 45 62 chr13 26977602 26978518 -92766380 - L1ME1 LINE L1 -4752 1463 612 3910 191 20 55 chr13 26978516 26978558 -92766340 + L1ME1 LINE L1 5141 5183 -1151 * 2242 111 0 0 chr13 26978558 26978846 -92766052 - AluSx SINE Alu -14 298 11 2280 84 7 3 chr13 26978853 26979151 -92765747 - AluSg SINE Alu -11 299 1 3910 191 20 55 chr13 26979151 26980007 -92764891 + L1ME1 LINE L1 5189 6074 -260 2228 106 0 20 chr13 26980007 26980309 -92764589 - AluSx SINE Alu -16 296 1 1995 125 11 0 chr13 26980319 26980598 -92764300 - AluSg SINE Alu -22 288 7 3910 191 20 55 chr13 26980598 26980761 -92764137 + L1ME1 LINE L1 6083 6332 -2 1831 158 4 0 chr13 26980764 26981043 -92763855 + AluJb SINE Alu 1 280 -32 226 249 79 97 chr13 26981074 26981239 -92763659 + MARNA DNA Mariner 345 506 -80 352 221 50 122 chr13 26981379 26981478 -92763420 + MIR3 SINE MIR 37 119 -89 2942 0 0 0 chr13 26981478 26981789 -92763109 - AluY SINE Alu 0 311 1 352 221 50 122 chr13 26981789 26981870 -92763028 + MIR3 SINE MIR 119 204 -4 197 276 111 91 chr13 26981842 26981921 -92762977 + L2 LINE L2 2157 2233 -1081 * 926 160 0 0 chr13 26981921 26982052 -92762846 + AluJo/FLAM SINE Alu 1 131 -171 2302 103 0 6 chr13 26982054 26982365 -92762533 + AluSx SINE Alu 1 309 -3 197 276 111 91 chr13 26982365 26982633 -92762265 + L2 LINE L2 2233 2514 -800 1126 129 0 6 chr13 26982646 26982809 -92762089 - FRAM SINE Alu -23 153 1 577 212 72 52 chr13 26982830 26983023 -92761875 + L2 LINE L2 2551 2747 -567 2136 129 0 13 chr13 26983184 26983494 -92761404 - AluJb SINE Alu -6 306 1 681 158 108 17 chr13 26983496 26983616 -92761282 - FLAM_A SINE Alu -2 131 1 443 353 112 31 chr13 26983854 26984177 -92760721 + L2 LINE L2 2918 3266 -6 180 241 0 0 chr13 26984177 26984235 -92760663 + GA-rich Low_complexity Low_complexity 1 58 0 215 231 58 0 chr13 26984353 26984405 -92760493 - MIR SINE MIR -102 160 106 1929 170 0 3 chr13 26984758 26985069 -92759829 - AluJo SINE Alu -2 310 1 21 0 0 0 chr13 26985072 26985093 -92759805 + AT_rich Low_complexity Low_complexity 1 21 0 2389 83 0 0 chr13 26985553 26985842 -92759056 - AluSc SINE Alu -20 289 1 1863 170 3 0 chr13 26986341 26986630 -92758268 + AluJb SINE Alu 1 290 -22 2166 117 17 0 chr13 26986710 26987000 -92757898 - AluSx SINE Alu -17 295 1 1653 174 50 17 chr13 26987211 26987510 -92757388 + AluJb SINE Alu 2 310 -2 231 36 0 0 chr13 26987510 26987538 -92757360 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 211 268 28 56 chr13 26987901 26987972 -92756926 - L3 LINE CR1 -2 1575 1507 2577 72 0 0 chr13 26988301 26988605 -92756293 + AluSx SINE Alu 1 304 -8 2237 254 60 8 chr13 26988719 26989373 -92755525 + L1ME3 LINE L1 5474 6161 -1 227 259 119 28 chr13 26989775 26989918 -92754980 - MIR3 SINE MIR -9 199 44 312 344 152 7 chr13 26991590 26991741 -92753157 + MIR3 SINE MIR 30 202 -6 3527 119 73 16 chr13 26991878 26992413 -92752485 + L1MB2 LINE L1 5554 6126 -45 2316 102 3 0 chr13 26992413 26992717 -92752181 + AluSx SINE Alu 1 305 -7 3527 119 73 16 chr13 26992717 26992759 -92752139 + L1MB2 LINE L1 6126 6164 -7 1958 130 18 0 chr13 26992996 26993272 -92751626 + AluSx SINE Alu 1 281 -31 2269 105 3 3 chr13 26993274 26993579 -92751319 + AluSg1 SINE Alu 2 306 -3 2197 88 7 0 chr13 26993832 26994117 -92750781 - AluSg SINE Alu -23 287 1 1322 256 58 23 chr13 26994888 26995286 -92749612 + L1ME4a LINE L1 5478 5889 -273 774 190 131 0 chr13 26995489 26995626 -92749272 - FAM SINE Alu -30 155 1 2321 80 3 13 chr13 26995755 26996055 -92748843 + AluSg SINE Alu 1 297 -13 1650 194 7 13 chr13 26996069 26996379 -92748519 + AluJo SINE Alu 1 308 -4 716 183 71 128 chr13 26996464 26996561 -92748337 + L1MC5 LINE L1 7309 7410 -551 2235 104 0 0 chr13 26996561 26996883 -92748015 + AluSx SINE Alu 1 322 0 716 183 71 128 chr13 26996883 26997150 -92747748 + L1MC5 LINE L1 7410 7654 -307 920 63 0 24 chr13 26997158 26997284 -92747614 + AluSg/x SINE Alu 174 296 -14 359 256 44 118 chr13 26997284 26997390 -92747508 + L1MC5 LINE L1 7663 7775 -186 949 169 17 11 chr13 26997390 26997567 -92747331 + L1MB7 LINE L1 5996 6173 -11 359 256 44 118 chr13 26997567 26997730 -92747168 + L1MC5 LINE L1 7775 7912 -49 2067 152 118 26 chr13 26998780 26999195 -92745703 - MLT1C LTR MaLR 0 467 15 259 289 24 0 chr13 26999474 26999557 -92745341 + L1ME4a LINE L1 5951 6035 -86 415 317 8 8 chr13 26999575 26999698 -92745200 - MIR SINE MIR -130 132 10 295 303 74 0 chr13 26999707 26999829 -92745069 - MIR SINE MIR 0 262 132 1844 179 71 0 chr13 27000100 27000424 -92744474 - MER7A DNA MER2_type -1 345 1 271 273 112 35 chr13 27000536 27000707 -92744191 + MLT1J LTR MaLR 258 481 -9 186 322 0 81 chr13 27001045 27001132 -92743766 + L2 LINE L2 3190 3269 -3 23 33 0 0 chr13 27001156 27001186 -92743712 + AT_rich Low_complexity Low_complexity 1 30 0 267 29 0 0 chr13 27001236 27001245 -92743653 + (A)n Simple_repeat Simple_repeat 1 9 -25 1657 180 0 36 chr13 27001245 27001410 -92743488 - AluJo SINE Alu -18 294 143 2245 120 3 0 chr13 27001410 27001719 -92743179 - AluSp SINE Alu -3 310 1 1657 180 0 36 chr13 27001719 27001858 -92743040 - AluJo SINE Alu -169 143 1 267 29 0 0 chr13 27001858 27001882 -92743016 + (A)n Simple_repeat Simple_repeat 8 34 0 349 174 76 22 chr13 27001885 27001977 -92742921 - L1MC5 LINE L1 -38 7923 7827 2263 89 3 0 chr13 27002063 27002354 -92742544 - AluY SINE Alu -19 292 1 220 228 70 0 chr13 27002700 27002757 -92742141 - MER5A DNA MER1_type -128 61 1 426 285 68 98 chr13 27002823 27003058 -92741840 + MIR SINE MIR 4 231 -31 350 296 70 35 chr13 27003118 27003260 -92741638 + MIR3 SINE MIR 7 153 -55 27 49 0 0 chr13 27003349 27003390 -92741508 + AT_rich Low_complexity Low_complexity 1 41 0 309 214 60 12 chr13 27003633 27003717 -92741181 + CT-rich Low_complexity Low_complexity 4 91 0 923 175 26 52 chr13 27003719 27003913 -92740985 - AluJo SINE Alu -38 274 86 2451 78 3 0 chr13 27003995 27004290 -92740608 - AluSp SINE Alu -17 296 1 2216 114 3 0 chr13 27004741 27005039 -92739859 + AluSx SINE Alu 1 299 -13 560 269 16 65 chr13 27007494 27007680 -92737218 + MER5B DNA MER1_type 1 177 -1 446 302 89 12 chr13 27008379 27008548 -92736350 + MER5A DNA MER1_type 8 189 0 863 214 66 6 chr13 27009035 27009217 -92735681 - MER3 DNA MER1_type -16 193 1 367 232 56 16 chr13 27009874 27009999 -92734899 + L1MC5 LINE L1 7796 7925 -36 659 244 28 11 chr13 27010039 27010219 -92734679 - MIR SINE MIR -6 256 74 387 276 159 6 chr13 27010306 27010476 -92734422 - L2 LINE L2 0 3313 3118 2147 120 0 3 chr13 27010901 27011192 -92733706 + AluSc SINE Alu 1 290 -19 2408 88 3 0 chr13 27011792 27012097 -92732801 - AluSx SINE Alu -6 306 1 2380 87 3 16 chr13 27013002 27013311 -92731587 - AluSx SINE Alu -7 305 1 254 188 24 24 chr13 27013692 27013777 -92731121 - HAL1 LINE L1 -121 2386 2302 816 216 123 47 chr13 27013878 27014112 -92730786 - HAL1 LINE L1 -538 1969 1696 258 32 0 0 chr13 27014112 27014143 -92730755 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 816 216 123 47 chr13 27014143 27014273 -92730625 - HAL1 LINE L1 -811 1696 1577 2217 120 0 0 chr13 27014284 27014584 -92730314 - AluSx SINE Alu -12 300 1 25 31 0 0 chr13 27014587 27014619 -92730279 + AT_rich Low_complexity Low_complexity 1 32 0 1025 252 17 4 chr13 27014880 27015110 -92729788 - MIR SINE MIR -24 238 6 597 250 154 27 chr13 27015124 27015592 -92729306 - L1ME LINE L1 -304 5817 5278 340 336 56 48 chr13 27015685 27015935 -92728963 - L1ME LINE L1 -1013 5133 4882 624 315 127 27 chr13 27016065 27016579 -92728319 - L1ME LINE L1 -1487 4659 4095 243 0 0 0 chr13 27016669 27016696 -92728202 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1320 255 159 72 chr13 27016705 27017191 -92727707 - HAL1 LINE L1 -1089 1418 976 183 80 0 0 chr13 27017191 27017216 -92727682 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 1320 255 159 72 chr13 27017216 27018034 -92726864 - HAL1 LINE L1 -1531 976 1 184 280 129 30 chr13 27018038 27018170 -92726728 + L2 LINE L2 2689 2833 -481 227 360 0 9 chr13 27018200 27018311 -92726587 + CT-rich Low_complexity Low_complexity 1 110 0 1943 121 29 0 chr13 27019554 27019826 -92725072 - AluSx SINE Alu -32 280 1 2553 47 14 0 chr13 27020063 27020360 -92724538 - AluY SINE Alu -10 301 1 1498 183 32 18 chr13 27020519 27020804 -92724094 - AluJb SINE Alu -22 290 2 2314 76 3 7 chr13 27020834 27021135 -92723763 + AluY SINE Alu 1 300 -11 449 252 18 0 chr13 27021262 27021373 -92723525 + MER58 DNA MER1_type 1 113 -102 283 228 0 0 chr13 27021376 27021433 -92723465 + MER58 DNA MER1_type 2364 2420 0 2252 101 3 3 chr13 27021634 27021931 -92722967 + AluSp SINE Alu 1 297 -16 2345 81 7 10 chr13 27022782 27023091 -92721807 + AluSq SINE Alu 1 308 -5 28 79 0 0 chr13 27023175 27023238 -92721660 + AT_rich Low_complexity Low_complexity 1 63 0 23 33 0 0 chr13 27023518 27023548 -92721350 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr13 27024622 27024651 -92720247 + (T)n Simple_repeat Simple_repeat 1 29 0 214 279 0 76 chr13 27026698 27026777 -92718121 - L2 LINE L2 0 3313 3241 696 270 204 18 chr13 27026878 27027079 -92717819 - L2 LINE L2 -313 3000 2838 2292 83 3 0 chr13 27027079 27027368 -92717530 + AluY SINE Alu 2 291 -20 696 270 204 18 chr13 27027368 27027515 -92717383 - L2 LINE L2 -475 2838 2593 2225 101 10 0 chr13 27027647 27027943 -92716955 + AluSx SINE Alu 1 299 -13 26 30 0 0 chr13 27028796 27028829 -92716069 + AT_rich Low_complexity Low_complexity 1 33 0 2031 136 13 13 chr13 27029083 27029384 -92715514 + AluJo SINE Alu 1 301 -11 530 262 52 62 chr13 27029583 27029793 -92715105 - MIR SINE MIR -18 244 37 260 212 20 91 chr13 27030099 27030198 -92714700 + L1 LINE L1 4108 4199 -1947 419 309 92 43 chr13 27030231 27030558 -92714340 + L1 LINE L1 4260 4602 -1544 242 260 0 13 chr13 27030715 27030792 -92714106 + L1 LINE L1 4751 4826 -1320 21 0 0 0 chr13 27030854 27030875 -92714023 + AT_rich Low_complexity Low_complexity 1 21 0 1934 140 14 0 chr13 27030876 27031155 -92713743 - AluJb SINE Alu -23 289 7 287 248 26 17 chr13 27031166 27031283 -92713615 + L1 LINE L1 4922 5039 -1107 29 28 0 0 chr13 27031316 27031352 -92713546 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 27031369 27031391 -92713507 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr13 27031699 27031752 -92713146 + AT_rich Low_complexity Low_complexity 1 53 0 2027 113 53 0 chr13 27031788 27032071 -92712827 + AluSx SINE Alu 2 299 -13 647 258 32 32 chr13 27032242 27032428 -92712470 + MER5A DNA MER1_type 4 189 0 587 252 15 0 chr13 27032763 27032894 -92712004 - FLAM_A SINE Alu 0 133 1 310 258 129 0 chr13 27033048 27033141 -92711757 + MIR SINE MIR 118 222 -40 2831 9 0 6 chr13 27033250 27033565 -92711333 - AluYb8 SINE Alu -5 313 1 247 262 123 8 chr13 27033621 27033743 -92711155 - L1ME4a LINE L1 -25 6096 5961 22 0 0 0 chr13 27033948 27033970 -92710928 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr13 27034474 27034512 -92710386 + AT_rich Low_complexity Low_complexity 1 38 0 2066 148 33 33 chr13 27035059 27035423 -92709475 - THE1B LTR MaLR 0 364 1 472 185 96 107 chr13 27036599 27036777 -92708121 - MER20 DNA MER1_type -42 177 2 323 280 47 9 chr13 27037029 27037136 -92707762 + MIR SINE MIR 131 241 -21 639 221 16 0 chr13 27037477 27037604 -92707294 + FLAM_C SINE Alu 2 130 -3 862 194 13 0 chr13 27038682 27038837 -92706061 - MER5A DNA MER1_type -3 186 30 2033 137 3 0 chr13 27039306 27039612 -92705286 - AluSg SINE Alu -3 307 1 503 240 88 88 chr13 27040369 27040458 -92704440 - L1M4 LINE L1 -1440 4706 4618 2167 103 0 0 chr13 27040458 27040773 -92704125 - AluSg SINE Alu 0 315 1 503 240 88 88 chr13 27040773 27041045 -92703853 - L1M4 LINE L1 -1527 4619 4344 2670 178 21 8 chr13 27041141 27041674 -92703224 - L1MB7 LINE L1 -16 6168 5629 918 157 5 17 chr13 27041702 27041913 -92702985 - L1MB7 LINE L1 -687 5477 5263 6498 161 29 29 chr13 27041930 27044144 -92700754 - L1MA4 LINE L1 -1 6299 4065 1630 169 11 15 chr13 27044144 27044417 -92700481 - AluJb SINE Alu -11 301 30 6498 161 29 29 chr13 27044417 27044591 -92700307 - L1MA4 LINE L1 -2235 4065 3892 708 199 47 121 chr13 27044599 27044760 -92700138 - L1MB7 LINE L1 -891 5255 5128 203 88 29 0 chr13 27044760 27044794 -92700104 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 708 199 47 121 chr13 27044794 27044954 -92699944 - L1MB7 LINE L1 -1018 5128 4958 2298 102 0 3 chr13 27045070 27045373 -92699525 - AluSx SINE Alu -10 302 1 1035 296 119 73 chr13 27045598 27045825 -92699073 - L1MEd LINE L1 -4745 1565 1350 1459 173 16 70 chr13 27045825 27045999 -92698899 - AluJb SINE Alu -17 295 144 2143 117 7 3 chr13 27045999 27046290 -92698608 - AluSq SINE Alu -21 292 1 1459 173 16 70 chr13 27046290 27046427 -92698471 - AluJb SINE Alu -168 144 1 1035 296 119 73 chr13 27046427 27047495 -92697403 - L1MEd LINE L1 -4960 1350 148 2039 143 0 0 chr13 27047495 27047811 -92697087 - AluSx SINE Alu 0 316 1 1035 296 119 73 chr13 27047811 27047956 -92696942 - L1MEd LINE L1 -6162 148 11 334 286 62 62 chr13 27047973 27048200 -92696698 - L1MB7 LINE L1 -1799 4347 4121 195 147 0 0 chr13 27049044 27049078 -92695820 + L3 LINE CR1 680 713 -864 954 184 11 6 chr13 27049223 27049397 -92695501 - FAM SINE Alu 0 175 1 714 285 45 24 chr13 27049788 27050034 -92694864 + MIR SINE MIR 1 251 -11 23 54 0 0 chr13 27050276 27050313 -92694585 + AT_rich Low_complexity Low_complexity 1 37 0 1362 113 0 0 chr13 27051727 27051904 -92692994 - AluSq SINE Alu -136 177 1 646 133 0 10 chr13 27051932 27052030 -92692868 + AluS SINE Alu 3 99 -213 198 0 0 0 chr13 27052058 27052080 -92692818 + (A)n Simple_repeat Simple_repeat 1 22 0 593 236 34 14 chr13 27052082 27052230 -92692668 - L2 LINE L2 -725 2589 2439 1691 176 14 0 chr13 27052232 27052516 -92692382 + AluJb SINE Alu 1 288 -24 199 329 101 0 chr13 27052601 27052680 -92692218 - L2 LINE L2 -912 2402 2316 701 210 180 42 chr13 27052681 27053177 -92691721 - MLT1G LTR MaLR 0 590 9 2088 222 181 31 chr13 27053235 27054047 -92690851 - L2 LINE L2 -986 2328 1395 332 304 56 16 chr13 27054022 27054147 -92690751 + MIR SINE MIR 115 244 -18 * 360 282 36 0 chr13 27054419 27054529 -92690369 - L1ME3A LINE L1 -24 6146 6033 402 57 0 0 chr13 27055797 27055850 -92689048 + (CA)n Simple_repeat Simple_repeat 2 54 0 406 211 33 0 chr13 27059052 27059142 -92685756 + MLT1C LTR MaLR 373 465 -2 3697 163 42 42 chr13 27059804 27060539 -92684359 - L1MB8 LINE L1 0 6178 5441 1498 160 70 4 chr13 27060539 27060795 -92684103 - AluJb SINE Alu -39 273 1 3697 163 42 42 chr13 27060795 27060870 -92684028 - L1MB8 LINE L1 -736 5442 5368 330 213 13 0 chr13 27060872 27060947 -92683951 + MER58A DNA MER1_type 43 118 0 1392 133 55 0 chr13 27060960 27061178 -92683720 - MER30 DNA MER1_type 0 230 1 23 0 0 0 chr13 27062877 27062900 -92681998 + AT_rich Low_complexity Low_complexity 1 23 0 2348 54 0 14 chr13 27063065 27063360 -92681538 - AluY SINE Alu -20 291 1 326 340 184 0 chr13 27063364 27063511 -92681387 - MER5A DNA MER1_type 0 189 16 253 359 19 0 chr13 27064464 27064570 -92680328 - MIR3 SINE MIR -3 205 98 2375 93 0 0 chr13 27065166 27065478 -92679420 - AluSx SINE Alu 0 312 1 369 342 60 0 chr13 27065646 27065830 -92679068 + MIR SINE MIR 36 230 -32 528 261 100 66 chr13 27066067 27066294 -92678604 + L1MC4 LINE L1 7560 7809 -233 1542 153 4 0 chr13 27066294 27066543 -92678355 - AluJo SINE Alu -61 251 2 528 261 100 66 chr13 27066543 27066725 -92678173 + L1MC4 LINE L1 7809 7983 -59 547 97 11 11 chr13 27066740 27066833 -92678065 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 2074 129 0 0 chr13 27068256 27068566 -92676332 - AluSx SINE Alu -2 310 1 201 74 0 0 chr13 27069176 27069203 -92675695 + (A)n Simple_repeat Simple_repeat 1 27 0 1132 199 5 9 chr13 27069204 27069425 -92675473 + AluJb SINE Alu 3 222 -90 628 234 229 5 chr13 27070312 27070517 -92674381 + MIR SINE MIR 2 252 -10 1943 136 0 3 chr13 27070560 27070862 -92674036 + AluSx SINE Alu 1 301 -11 315 303 56 56 chr13 27071138 27071316 -92673582 + MIR SINE MIR 39 216 -46 2026 98 56 0 chr13 27071923 27072210 -92672688 - AluSx SINE Alu -9 303 1 929 111 13 20 chr13 27073250 27073403 -92671495 - FRAM SINE Alu -17 159 8 24 0 0 0 chr13 27075591 27075615 -92669283 + AT_rich Low_complexity Low_complexity 1 24 0 770 184 19 111 chr13 27075668 27075721 -92669177 + MER5A DNA MER1_type 1 57 -132 1799 70 9 0 chr13 27075721 27075949 -92668949 - MER30 DNA MER1_type 0 230 1 770 184 19 111 chr13 27075949 27076102 -92668796 + MER5A DNA MER1_type 57 188 -1 606 299 95 30 chr13 27078489 27078657 -92666241 - MIR SINE MIR -13 249 61 2281 87 3 0 chr13 27078657 27078955 -92665943 + AluSp SINE Alu 1 299 -14 606 299 95 30 chr13 27078955 27079017 -92665881 - MIR SINE MIR -201 61 4 287 268 60 0 chr13 27079256 27079343 -92665555 + MIR SINE MIR 46 140 -68 455 280 82 44 chr13 27080631 27080813 -92664085 + MIR3 SINE MIR 6 194 -14 2153 88 7 10 chr13 27080820 27081126 -92663772 + AluSq SINE Alu 1 305 -8 195 204 0 0 chr13 27081397 27081441 -92663457 + (ATG)n Simple_repeat Simple_repeat 2 45 0 660 298 34 0 chr13 27081471 27081649 -92663249 - MIR SINE MIR -74 188 5 2301 79 3 0 chr13 27081808 27082112 -92662786 - AluSx SINE Alu -7 305 1 180 0 0 0 chr13 27083044 27083064 -92661834 + (A)n Simple_repeat Simple_repeat 1 20 0 985 198 154 8 chr13 27083329 27083576 -92661322 - MER58B DNA MER1_type -1 340 58 26 30 0 0 chr13 27085672 27085705 -92659193 + AT_rich Low_complexity Low_complexity 1 33 0 307 259 70 95 chr13 27085705 27085863 -92659035 - HAL1b LINE L1 -7 1341 1188 265 60 0 40 chr13 27085877 27085927 -92658971 + (TA)n Simple_repeat Simple_repeat 1 48 0 1956 103 69 0 chr13 27085990 27086281 -92658617 - AluSx SINE Alu 0 312 2 407 230 122 14 chr13 27086345 27086493 -92658405 - L1MC/D LINE L1 -2061 5747 5584 251 240 53 0 chr13 27086572 27086647 -92658251 + Charlie7 DNA MER1_type 1676 1754 -858 2044 104 3 3 chr13 27086728 27087017 -92657881 - AluSg SINE Alu -21 289 1 1738 150 17 23 chr13 27087232 27087532 -92657366 + AluJo SINE Alu 1 298 -14 456 286 62 18 chr13 27087886 27088071 -92656827 + MIR SINE MIR 2 192 -62 352 343 30 47 chr13 27089729 27089965 -92654933 - L3b LINE CR1 -172 1411 1180 2210 112 0 0 chr13 27092023 27092328 -92652570 - AluSx SINE Alu -7 305 1 235 266 0 31 chr13 27094170 27094234 -92650664 + L2 LINE L2 3195 3256 -16 279 379 62 7 chr13 27094283 27094428 -92650470 + L2 LINE L2 3112 3264 -8 2023 115 0 0 chr13 27095233 27095511 -92649387 + AluSx SINE Alu 21 298 -14 200 235 0 39 chr13 27096569 27096620 -92648278 - L2 LINE L2 0 3272 3224 807 266 82 20 chr13 27096628 27096872 -92648026 + MIR SINE MIR 4 262 0 2187 119 0 0 chr13 27097152 27097463 -92647435 - AluSq SINE Alu -2 311 1 552 314 57 13 chr13 27097883 27098112 -92646786 + MIR SINE MIR 3 241 -21 243 88 0 0 chr13 27098215 27098249 -92646649 + (TC)n Simple_repeat Simple_repeat 1 34 0 2199 112 0 13 chr13 27098249 27098563 -92646335 - AluSx SINE Alu -2 310 1 2041 108 3 29 chr13 27098573 27098889 -92646009 - AluSq SINE Alu -5 308 1 2423 74 0 0 chr13 27098911 27099221 -92645677 - AluY SINE Alu 0 311 2 494 259 44 112 chr13 27099221 27099689 -92645209 + L2 LINE L2 2588 3020 -252 193 232 0 101 chr13 27099777 27099846 -92645052 + L2 LINE L2 3197 3258 -14 186 43 0 0 chr13 27099850 27099873 -92645025 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 1757 162 13 3 chr13 27100074 27100383 -92644515 - AluJb SINE Alu 0 312 1 1606 159 36 0 chr13 27101718 27101994 -92642904 + AluJo SINE Alu 1 286 -26 201 132 0 0 chr13 27101994 27102032 -92642866 + (GA)n Simple_repeat Simple_repeat 1 38 0 299 295 152 0 chr13 27102413 27102518 -92642380 - L2 LINE L2 -225 3047 2927 1868 113 24 17 chr13 27102521 27102814 -92642084 + AluSx SINE Alu 1 295 -17 927 236 75 17 chr13 27102991 27103232 -92641666 - MIR SINE MIR 0 262 8 462 341 160 16 chr13 27103356 27103826 -92641072 + L2 LINE L2 2476 3011 -302 2242 69 0 26 chr13 27103908 27104212 -92640686 + AluY SINE Alu 1 296 -15 212 289 154 0 chr13 27104242 27104346 -92640552 - L2 LINE L2 -4 3268 3149 414 299 26 0 chr13 27104382 27104499 -92640399 + L2 LINE L2 3194 3313 0 498 75 0 0 chr13 27104706 27104773 -92640125 + (CA)n Simple_repeat Simple_repeat 2 68 0 260 218 90 26 chr13 27106038 27106116 -92638782 + MIR SINE MIR 111 193 -69 558 165 0 0 chr13 27106143 27106246 -92638652 + CT-rich Low_complexity Low_complexity 4 106 0 207 361 190 10 chr13 27106458 27106663 -92638235 + L2 LINE L2 3029 3270 -2 474 254 171 31 chr13 27107162 27107390 -92637508 - MIR SINE MIR 0 262 3 488 300 70 25 chr13 27107451 27107651 -92637247 + MIR SINE MIR 49 257 -5 2288 96 0 0 chr13 27108571 27108873 -92636025 + AluSx SINE Alu 1 302 -10 500 301 5 61 chr13 27109617 27109830 -92635068 - L3 LINE CR1 -195 1382 1182 519 334 51 13 chr13 27110421 27110650 -92634248 + MIR SINE MIR 15 252 -10 207 322 45 118 chr13 27110652 27110966 -92633932 - L2 LINE L2 -51 3221 2931 208 115 39 58 chr13 27111414 27111466 -92633432 + MIR SINE MIR 67 117 -91 264 122 0 0 chr13 27113129 27113170 -92631728 + (T)n Simple_repeat Simple_repeat 1 41 0 533 281 102 0 chr13 27113322 27113489 -92631409 - MIR SINE MIR 0 262 79 450 260 281 5 chr13 27113560 27113756 -92631142 + MIR SINE MIR 2 251 -11 5572 146 19 16 chr13 27114417 27115110 -92629788 + L1MA6 LINE L1 4737 5427 -873 2220 111 3 0 chr13 27115110 27115408 -92629490 + AluSx SINE Alu 1 299 -13 5572 146 19 16 chr13 27115408 27116268 -92628630 + L1MA6 LINE L1 5427 6293 -7 2212 96 0 16 chr13 27116279 27116591 -92628307 + AluSg SINE Alu 1 307 -3 434 260 50 0 chr13 27116678 27116778 -92628120 - L2 LINE L2 -1 3312 3208 318 151 314 0 chr13 27116989 27117075 -92627823 - L1MC/D LINE L1 -2340 5468 5356 330 359 91 36 chr13 27117101 27117485 -92627413 - L2 LINE L2 -485 2829 2425 307 257 48 48 chr13 27117503 27117608 -92627290 + MIR SINE MIR 86 190 -72 904 129 0 0 chr13 27117818 27117942 -92626956 + FLAM_C SINE Alu 1 124 -19 1991 119 28 0 chr13 27118903 27119188 -92625710 - AluSx SINE Alu -19 293 1 837 266 54 78 chr13 27119192 27119493 -92625405 - L1MC/D LINE L1 -762 5384 5077 977 179 0 0 chr13 27119493 27119655 -92625243 - FRAM SINE Alu -2 164 3 837 266 54 78 chr13 27119655 27120333 -92624565 - L1MC/D LINE L1 -1069 5077 4541 320 95 222 0 chr13 27120333 27120396 -92624502 + MER116 DNA Mariner 1 77 -3 837 266 54 78 chr13 27120396 27120559 -92624339 - L1MC/D LINE L1 -1605 4541 4376 2287 92 3 0 chr13 27120640 27120932 -92623966 - AluSx SINE Alu -19 293 1 735 257 40 71 chr13 27121182 27121478 -92623420 - MER102a DNA MER1_type -6 324 38 236 360 134 57 chr13 27121554 27121753 -92623145 + L2 LINE L2 2804 2986 -286 2285 95 0 3 chr13 27121753 27122049 -92622849 - AluSq SINE Alu -16 297 3 236 360 134 57 chr13 27122049 27122268 -92622630 + L2 LINE L2 2986 3254 -18 234 422 100 20 chr13 27123141 27123392 -92621506 + L2 LINE L2 2994 3264 -8 2156 99 7 0 chr13 27123413 27123732 -92621166 - AluSq SINE Alu 0 321 1 708 123 0 0 chr13 27123821 27123935 -92620963 + (ATG)n Simple_repeat Simple_repeat 1 114 0 2371 93 0 0 chr13 27123984 27124285 -92620613 - AluSq SINE Alu -12 301 1 2135 87 11 14 chr13 27124593 27124879 -92620019 - AluSq SINE Alu -28 285 1 26 0 0 0 chr13 27124934 27124960 -92619938 + AT_rich Low_complexity Low_complexity 1 26 0 2183 103 0 0 chr13 27125115 27125429 -92619469 + AluSg SINE Alu 1 314 0 198 0 0 0 chr13 27126061 27126083 -92618815 + (CAT)n Simple_repeat Simple_repeat 3 24 0 2346 101 3 0 chr13 27126137 27126444 -92618454 - AluSp SINE Alu -5 308 1 2406 235 129 20 chr13 27126637 27127352 -92617546 - MER21B LTR ERV1 -52 811 19 312 194 32 97 chr13 27127406 27127499 -92617399 - MER21B LTR ERV1 -776 87 1 2345 79 0 3 chr13 27127522 27127814 -92617084 + AluY SINE Alu 1 291 -20 384 250 96 32 chr13 27127850 27128006 -92616892 - L1MC5 LINE L1 -44 7917 7752 298 109 0 0 chr13 27128080 27128126 -92616772 - LTR23 LTR ERV1 -1 436 391 611 180 82 0 chr13 27128128 27128250 -92616648 + FLAM_C SINE Alu 1 132 -11 2305 101 82 10 chr13 27128252 27128640 -92616258 - LTR56 LTR ERV1 -21 424 9 226 221 47 23 chr13 27128775 27128861 -92616037 - L1ME4a LINE L1 -3 6118 6031 1564 163 14 54 chr13 27130611 27130905 -92613993 - AluJb SINE Alu -30 282 1 23 33 0 0 chr13 27131128 27131158 -92613740 + AT_rich Low_complexity Low_complexity 1 30 0 186 310 178 39 chr13 27131479 27131608 -92613290 - MIR SINE MIR -63 199 53 281 275 64 0 chr13 27131950 27132059 -92612839 - L1ME4a LINE L1 -5 6116 6001 840 145 0 36 chr13 27132073 27132211 -92612687 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr13 27132454 27132475 -92612423 + AT_rich Low_complexity Low_complexity 1 21 0 539 198 9 0 chr13 27134192 27134303 -92610595 + L1MA10 LINE L1 6222 6333 -1 1556 183 45 3 chr13 27134782 27135071 -92609827 + AluJo SINE Alu 1 301 -11 23 33 0 0 chr13 27135268 27135298 -92609600 + AT_rich Low_complexity Low_complexity 1 30 0 180 254 182 18 chr13 27135451 27135506 -92609392 + MIR SINE MIR 85 148 -60 1756 138 28 14 chr13 27136587 27136877 -92608021 + AluJb SINE Alu 13 306 -6 428 198 179 9 chr13 27136995 27137101 -92607797 + MER5C DNA MER1_type 1 124 -200 351 276 141 45 chr13 27139021 27139220 -92605678 + MIR SINE MIR 2 219 -43 32 26 0 0 chr13 27139612 27139651 -92605247 + AT_rich Low_complexity Low_complexity 1 39 0 361 278 139 11 chr13 27141678 27141865 -92603033 + MIR SINE MIR 52 262 0 591 200 36 0 chr13 27142056 27142166 -92602732 + FRAM SINE Alu 25 138 -38 581 177 133 0 chr13 27142280 27142393 -92602505 + FLAM_C SINE Alu 1 128 -5 1924 147 0 0 chr13 27142403 27142682 -92602216 + AluJb SINE Alu 11 289 -23 1319 167 125 11 chr13 27143078 27143342 -92601556 - AluJo SINE Alu -18 294 1 1210 201 20 8 chr13 27143724 27143968 -92600930 + AluJo SINE Alu 60 306 -6 2093 107 0 4 chr13 27144584 27144892 -92600006 + AluSg SINE Alu 1 307 0 459 296 145 13 chr13 27145058 27145217 -92599681 + MER5A DNA MER1_type 4 183 -6 2164 121 0 6 chr13 27145280 27145593 -92599305 - AluSx SINE Alu -1 311 1 1460 169 22 77 chr13 27145595 27145908 -92598990 - AluJo SINE Alu -16 296 1 915 104 72 10 chr13 27145939 27146224 -92598674 - THE1C LTR MaLR 0 375 1 248 327 44 76 chr13 27146574 27146722 -92598176 + L2 LINE L2 2461 2597 -717 1074 146 57 33 chr13 27146722 27146934 -92597964 + MER20 DNA MER1_type 2 218 -1 248 327 44 76 chr13 27146934 27147060 -92597838 + L2 LINE L2 2597 2726 -588 26 30 0 0 chr13 27147112 27147145 -92597753 + AT_rich Low_complexity Low_complexity 1 33 0 1338 174 13 0 chr13 27147160 27147384 -92597514 - AluJo SINE Alu -84 228 2 2168 69 12 75 chr13 27147397 27147716 -92597182 - AluSg SINE Alu -11 299 1 237 281 47 16 chr13 27148061 27148125 -92596773 + L2 LINE L2 3239 3304 -9 1192 90 90 0 chr13 27148334 27148512 -92596386 + MER30 DNA MER1_type 1 194 -36 1895 137 24 3 chr13 27148812 27149105 -92595793 + AluJb SINE Alu 4 302 -10 2096 107 35 0 chr13 27149223 27149512 -92595386 + AluSx SINE Alu 1 299 -13 369 197 0 0 chr13 27149739 27149815 -92595083 + (TA)n Simple_repeat Simple_repeat 1 76 0 1973 132 13 10 chr13 27149815 27150118 -92594780 - AluSx SINE Alu -8 304 1 1870 145 24 3 chr13 27150484 27150773 -92594125 + AluJb SINE Alu 9 303 -9 1966 142 7 13 chr13 27150873 27151183 -92593715 - AluSx SINE Alu -4 308 1 871 114 8 15 chr13 27151375 27151507 -92593391 - FLAM_C SINE Alu -2 131 1 23 33 0 0 chr13 27151999 27152029 -92592869 + AT_rich Low_complexity Low_complexity 1 30 0 1885 135 20 3 chr13 27152913 27153216 -92591682 - AluSx SINE Alu -4 308 1 2008 99 3 58 chr13 27153339 27153651 -92591247 + AluSx SINE Alu 1 295 -17 423 307 147 13 chr13 27155261 27155492 -92589406 - MIR SINE MIR 0 262 1 252 302 65 36 chr13 27156186 27156325 -92588573 + L2 LINE L2 1786 1928 -1386 1690 157 14 38 chr13 27156390 27156683 -92588215 - AluJo SINE Alu -17 295 10 24 0 0 0 chr13 27156710 27156734 -92588164 + AT_rich Low_complexity Low_complexity 1 24 0 1336 85 0 0 chr13 27156734 27156898 -92588000 + AluY SINE Alu 122 285 -26 705 161 0 69 chr13 27156910 27157040 -92587858 - FLAM_C SINE Alu -14 129 9 189 0 0 0 chr13 27158007 27158028 -92586870 + (CA)n Simple_repeat Simple_repeat 2 22 0 574 27 27 0 chr13 27158182 27158257 -92586641 + MADE1 DNA Mariner 1 77 -3 1630 133 92 27 chr13 27158292 27158585 -92586313 - AluJb SINE Alu 0 312 1 1630 188 0 17 chr13 27158668 27158955 -92585943 - AluJb SINE Alu -28 284 3 2264 95 3 25 chr13 27159141 27159457 -92585441 - AluSc SINE Alu 0 309 1 181 176 0 29 chr13 27159734 27159768 -92585130 + MIR SINE MIR 157 189 -73 1812 145 34 17 chr13 27160904 27161201 -92583697 + AluJo SINE Alu 1 302 -10 183 80 0 0 chr13 27161210 27161235 -92583663 + (A)n Simple_repeat Simple_repeat 1 25 0 219 311 143 45 chr13 27161565 27161664 -92583234 + L2 LINE L2 1808 1896 -1418 2129 121 7 7 chr13 27161664 27161970 -92582928 - AluSx SINE Alu -6 306 1 219 311 143 45 chr13 27161970 27162387 -92582511 + L2 LINE L2 1896 2375 -939 27 29 0 0 chr13 27162411 27162445 -92582453 + AT_rich Low_complexity Low_complexity 1 34 0 195 288 15 30 chr13 27162666 27162732 -92582166 + L2 LINE L2 2590 2654 -660 186 240 120 53 chr13 27163222 27163297 -92581601 + L2 LINE L2 3155 3234 -38 1005 218 36 0 chr13 27163827 27164047 -92580851 - MER46A DNA MER2_type 0 236 9 492 195 160 50 chr13 27164284 27164567 -92580331 + MER2 DNA MER2_type 1 345 0 324 261 137 75 chr13 27164747 27165053 -92579845 - L1MC4a LINE L1 -1877 5931 5607 274 215 13 38 chr13 27165064 27165096 -92579802 + CT-rich Low_complexity Low_complexity 3 34 -45 210 37 0 0 chr13 27165096 27165123 -92579775 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 274 215 13 38 chr13 27165123 27165169 -92579729 + CT-rich Low_complexity Low_complexity 34 79 0 1492 175 0 12 chr13 27165175 27165426 -92579472 - AluJo SINE Alu -58 254 7 1364 197 45 31 chr13 27166259 27166549 -92578349 - AluJo SINE Alu -18 294 1 3672 279 54 16 chr13 27167040 27168363 -92576535 + L1MEc LINE L1 44 1417 -4979 805 232 143 36 chr13 27168417 27168697 -92576201 - MER2 DNA MER2_type -3 342 33 300 322 25 19 chr13 27168704 27168892 -92576006 + L1MEc LINE L1 1450 1681 -4620 * 421 189 74 0 chr13 27168876 27168971 -92575927 + L1MD3 LINE L1 7789 7890 -105 968 185 85 206 chr13 27169082 27169350 -92575548 + L1ME1 LINE L1 5260 5559 -607 591 139 111 0 chr13 27169350 27169458 -92575440 + FRAM SINE Alu 49 168 -8 968 185 85 206 chr13 27169458 27169801 -92575097 + L1ME1 LINE L1 5559 5885 -281 400 215 30 44 chr13 27171554 27171689 -92573209 + L1MB8 LINE L1 5879 6011 -167 325 261 52 15 chr13 27171733 27171867 -92573031 + L1MA10 LINE L1 6196 6334 0 2298 92 7 0 chr13 27172182 27172476 -92572422 + AluSx SINE Alu 1 296 -16 2076 149 3 0 chr13 27172648 27172957 -92571941 + AluSx SINE Alu 1 310 -2 26 64 0 0 chr13 27173433 27173480 -92571418 + AT_rich Low_complexity Low_complexity 1 47 0 21 82 0 0 chr13 27175902 27175951 -92568947 + AT_rich Low_complexity Low_complexity 1 49 0 32 26 0 0 chr13 27176475 27176514 -92568384 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr13 27177645 27177672 -92567226 + AT_rich Low_complexity Low_complexity 1 27 0 762 65 0 0 chr13 27178899 27179007 -92565891 - AluSp/q SINE Alu 0 313 206 2297 50 40 10 chr13 27179220 27179519 -92565379 - AluY SINE Alu -3 308 1 1276 201 38 45 chr13 27179981 27180269 -92564629 - AluJo SINE Alu -26 286 1 474 348 76 40 chr13 27180854 27181130 -92563768 - L3 LINE CR1 -29 1548 1263 24 0 0 0 chr13 27181567 27181591 -92563307 + AT_rich Low_complexity Low_complexity 1 24 0 243 358 82 0 chr13 27182874 27183008 -92561890 + MIR3 SINE MIR 57 201 -7 273 268 43 43 chr13 27184202 27184340 -92560558 - MLT1J1 LTR MaLR -21 425 288 798 183 26 37 chr13 27185100 27185291 -92559607 - MER5A DNA MER1_type 0 189 1 1027 190 5 19 chr13 27187051 27187256 -92557642 + AluJo SINE Alu 87 288 -24 180 0 0 0 chr13 27187259 27187279 -92557619 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 648 184 0 0 chr13 27187850 27187953 -92556945 + U6 snRNA snRNA 2 104 -3 48 18 0 0 chr13 27187953 27188008 -92556890 + AT_rich Low_complexity Low_complexity 1 55 0 2321 101 0 0 chr13 27188617 27188915 -92555983 - AluSx SINE Alu -14 298 1 218 329 14 0 chr13 27189269 27189342 -92555556 - MER5A DNA MER1_type -21 168 95 181 211 58 19 chr13 27189393 27189445 -92555453 + MER5A DNA MER1_type 136 189 0 634 233 7 14 chr13 27189543 27189689 -92555209 - FRAM SINE Alu -12 164 20 23 54 0 0 chr13 27189717 27189754 -92555144 + AT_rich Low_complexity Low_complexity 1 37 0 287 317 195 22 chr13 27190359 27190663 -92554235 + L2 LINE L2 2764 3124 -189 196 275 64 55 chr13 27190635 27190744 -92554154 - L3b LINE CR1 -298 1285 1176 * 348 24 0 0 chr13 27191031 27191072 -92553826 + (CA)n Simple_repeat Simple_repeat 2 42 0 1090 179 76 72 chr13 27191088 27191378 -92553520 - AluJo SINE Alu -11 291 1 328 327 12 36 chr13 27191616 27191781 -92553117 + MER5B DNA MER1_type 1 161 -17 630 139 0 0 chr13 27192120 27192221 -92552677 - FLAM_C SINE Alu -10 133 33 384 202 11 34 chr13 27193542 27193631 -92551267 - MER105 DNA DNA 0 204 118 456 67 0 0 chr13 27194510 27194570 -92550328 + (CA)n Simple_repeat Simple_repeat 2 61 0 29 70 0 0 chr13 27195771 27195828 -92549070 + AT_rich Low_complexity Low_complexity 1 57 0 1743 178 3 13 chr13 27196325 27196640 -92548258 + AluJb SINE Alu 1 312 0 291 236 82 50 chr13 27197879 27198044 -92546854 + L1MC4a LINE L1 5750 5922 -199 2403 164 216 12 chr13 27198173 27198772 -92546126 + Tigger7 DNA MER2_type 2 2478 -9 336 227 227 16 chr13 27198785 27198913 -92545985 + L2 LINE L2 3159 3313 0 270 0 0 0 chr13 27198918 27198948 -92545950 + (TG)n Simple_repeat Simple_repeat 2 31 0 261 0 0 0 chr13 27198947 27198976 -92545922 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 2135 134 0 7 chr13 27198976 27199282 -92545616 - AluSx SINE Alu -8 304 1 330 26 0 0 chr13 27199462 27199501 -92545397 + (TA)n Simple_repeat Simple_repeat 1 39 0 2380 98 0 0 chr13 27199501 27199807 -92545091 + AluSc SINE Alu 2 307 -2 926 149 0 12 chr13 27200945 27201113 -92543785 + L1MB4 LINE L1 6015 6180 0 1200 180 5 5 chr13 27201118 27201340 -92543558 + AluJb SINE Alu 88 309 -3 2440 72 0 7 chr13 27201656 27201961 -92542937 - AluY SINE Alu -8 303 1 429 226 12 0 chr13 27204752 27204836 -92540062 + L2 LINE L2 3188 3272 0 2321 95 0 0 chr13 27205201 27205497 -92539401 - AluSc SINE Alu -13 296 1 508 336 21 47 chr13 27205665 27205900 -92538998 + MIR SINE MIR 21 249 -13 512 219 34 8 chr13 27205907 27206026 -92538872 + MIR SINE MIR 131 252 -10 2083 124 30 0 chr13 27206211 27206509 -92538389 + AluSx SINE Alu 1 307 -5 360 260 68 62 chr13 27208012 27208158 -92536740 - MIR SINE MIR -66 196 50 2132 128 0 6 chr13 27208425 27208737 -92536161 + AluSx SINE Alu 1 310 -2 386 185 102 28 chr13 27208862 27208970 -92535928 + MIR3 SINE MIR 83 198 -10 257 210 67 134 chr13 27209058 27209177 -92535721 - L2 LINE L2 0 3313 3203 280 333 106 64 chr13 27209551 27209908 -92534990 - L2 LINE L2 -469 2845 2474 29 60 0 0 chr13 27210194 27210244 -92534654 + AT_rich Low_complexity Low_complexity 1 50 0 2359 74 3 10 chr13 27210532 27210830 -92534068 + AluY SINE Alu 1 296 -15 1076 131 11 23 chr13 27210830 27211006 -92533892 + AluSc SINE Alu 132 305 -4 850 164 7 33 chr13 27211006 27211158 -92533740 - MER2 DNA MER2_type -192 153 6 2098 120 0 46 chr13 27211302 27211627 -92533271 + AluSx SINE Alu 1 310 -2 319 245 10 10 chr13 27212859 27212957 -92531941 + (CAATA)n Simple_repeat Simple_repeat 3 100 0 1971 144 0 3 chr13 27217555 27217847 -92527051 - AluSx SINE Alu -21 291 1 620 141 0 10 chr13 27218415 27218514 -92526384 + MER4A LTR ERV1 1 98 -566 2151 97 169 29 chr13 27218514 27218863 -92526035 + MER4A LTR ERV1 261 658 -6 1831 171 0 7 chr13 27220728 27221038 -92523860 - AluJb SINE Alu -4 308 1 1645 271 73 38 chr13 27221806 27222446 -92522452 + MER115 DNA AcHobo 1 693 0 889 172 155 61 chr13 27222523 27222819 -92522079 + MER33 DNA MER1_type 1 324 0 249 276 0 40 chr13 27223168 27223244 -92521654 + MIR3 SINE MIR 125 197 -11 246 277 134 27 chr13 27223790 27223902 -92520996 - L2 LINE L2 -22 3291 3168 861 186 0 0 chr13 27224709 27224838 -92520060 - FLAM_A SINE Alu -4 129 1 396 0 0 0 chr13 27224902 27224946 -92519952 + (TG)n Simple_repeat Simple_repeat 2 45 0 248 261 125 34 chr13 27225872 27225960 -92518938 - L2 LINE L2 -8 3264 3169 676 311 28 16 chr13 27227009 27227257 -92517641 - MIR SINE MIR -10 252 2 29 84 0 0 chr13 27227601 27227672 -92517226 + AT_rich Low_complexity Low_complexity 1 71 0 1774 128 0 0 chr13 27228096 27228339 -92516559 + AluSq SINE Alu 1 243 -70 246 32 0 0 chr13 27228339 27228370 -92516528 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 201 116 23 23 chr13 27229694 27229737 -92515161 + (TA)n Simple_repeat Simple_repeat 1 43 0 279 114 0 0 chr13 27229899 27229943 -92514955 + (TTATG)n Simple_repeat Simple_repeat 2 45 0 1946 110 33 47 chr13 27229946 27230246 -92514652 - AluSx SINE Alu -16 296 1 218 360 46 39 chr13 27230251 27230404 -92514494 - MIR SINE MIR -62 200 47 2219 122 0 6 chr13 27230914 27231226 -92513672 + AluSg SINE Alu 1 310 0 2475 103 0 0 chr13 27231890 27232202 -92512696 + AluSx SINE Alu 1 312 0 289 276 92 0 chr13 27232543 27232630 -92512268 - MER5B DNA MER1_type 0 178 84 291 28 0 0 chr13 27233781 27233817 -92511081 + (TTA)n Simple_repeat Simple_repeat 1 36 0 809 148 41 0 chr13 27233817 27233939 -92510959 - FRAM SINE Alu -30 146 20 458 239 6 154 chr13 27234418 27234776 -92510122 - L1MC5 LINE L1 -56 7905 7647 1777 164 48 0 chr13 27236495 27236788 -92508110 - AluJb SINE Alu -5 307 1 536 282 31 37 chr13 27237831 27238048 -92506850 - MIR SINE MIR -19 243 37 2273 87 23 3 chr13 27238423 27238722 -92506176 + AluSp SINE Alu 1 305 -8 2041 110 4 0 chr13 27239430 27239874 -92505024 - AluSx SINE Alu 0 445 1 878 38 0 0 chr13 27239881 27239986 -92504912 - AluSg/x SINE Alu -3 307 203 201 360 67 11 chr13 27240970 27241059 -92503839 + MIR SINE MIR 1 94 -168 260 258 30 0 chr13 27241691 27241757 -92503141 + MIR SINE MIR 193 260 -2 233 372 43 11 chr13 27241789 27241883 -92503015 + L2 LINE L2 3165 3261 -11 2257 85 0 4 chr13 27242353 27242657 -92502241 + AluSp SINE Alu 3 305 0 734 236 82 52 chr13 27243209 27243442 -92501456 - MIR SINE MIR -21 241 2 370 288 92 26 chr13 27243669 27243822 -92501076 + MIR SINE MIR 85 247 -15 299 238 99 10 chr13 27244680 27244781 -92500117 + MIR SINE MIR 32 141 -67 541 170 217 9 chr13 27244825 27244931 -92499967 - FLAM_A SINE Alu -14 128 1 1568 137 47 36 chr13 27245728 27246026 -92498872 - AluJb SINE Alu 0 301 1 250 278 78 26 chr13 27246067 27246182 -92498716 + MIR SINE MIR 109 229 -33 2331 80 0 7 chr13 27246751 27247050 -92497848 + AluSc SINE Alu 1 297 -12 308 289 67 0 chr13 27249192 27249296 -92495602 - MIR SINE MIR -68 140 30 249 271 47 47 chr13 27250956 27251063 -92493835 - MIR SINE MIR -44 218 112 2006 136 40 0 chr13 27251269 27251570 -92493328 - AluSq SINE Alu 0 313 1 21 0 0 0 chr13 27251579 27251600 -92493298 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 27253051 27253079 -92491819 + AT_rich Low_complexity Low_complexity 1 28 0 311 328 147 58 chr13 27253739 27254065 -92490833 - L2 LINE L2 0 3272 2918 181 323 16 16 chr13 27254182 27254244 -92490654 + MIR SINE MIR 34 95 -113 382 231 154 19 chr13 27256025 27256181 -92488717 + MIR3 SINE MIR 27 203 -5 233 275 117 17 chr13 27258971 27259091 -92485807 - MIR SINE MIR -13 249 118 1046 161 118 0 chr13 27259999 27260185 -92484713 - MER3 DNA MER1_type -1 208 1 2337 94 0 0 chr13 27262063 27262362 -92482536 + AluSx SINE Alu 1 299 -13 598 290 50 18 chr13 27264232 27264453 -92480445 - MIR SINE MIR -21 241 14 261 157 39 0 chr13 27264861 27264912 -92479986 - L2 LINE L2 -11 3261 3209 1450 218 65 25 chr13 27266962 27267365 -92477533 + MLT1C LTR MaLR 3 421 -46 330 227 27 0 chr13 27267751 27267826 -92477072 - MIR3 SINE MIR -54 154 78 646 214 209 0 chr13 27268105 27268311 -92476587 + MIR SINE MIR 14 262 0 3831 153 91 15 chr13 27268341 27269000 -92475898 + MER50 LTR ERV1 1 709 -25 917 111 0 52 chr13 27269122 27269257 -92475641 + FLAM_C SINE Alu 2 129 -4 25 31 0 0 chr13 27269345 27269377 -92475521 + AT_rich Low_complexity Low_complexity 1 32 0 306 50 0 0 chr13 27270164 27270204 -92474694 + (CA)n Simple_repeat Simple_repeat 2 41 0 9450 212 41 75 chr13 27271341 27271622 -92473276 + L1M4 LINE L1 2311 2600 -3546 2014 138 7 0 chr13 27271622 27271912 -92472986 + AluSx SINE Alu 1 292 -20 9450 212 41 75 chr13 27271912 27272657 -92472241 + L1M4 LINE L1 2600 3369 -2777 2020 114 7 0 chr13 27272657 27272930 -92471968 + AluSx SINE Alu 1 275 -37 9450 212 41 75 chr13 27272930 27273124 -92471774 + L1M4 LINE L1 3369 3568 -2578 234 0 0 0 chr13 27273124 27273150 -92471748 + (CAA)n Simple_repeat Simple_repeat 2 27 0 9450 212 41 75 chr13 27273150 27274750 -92470148 + L1M4 LINE L1 3568 5023 -1123 1601 173 14 28 chr13 27274750 27275039 -92469859 - AluJb SINE Alu -27 285 1 9450 212 41 75 chr13 27275039 27275283 -92469615 + L1M4 LINE L1 5023 5274 -872 259 209 45 9 chr13 27275283 27275393 -92469505 + (TA)n Simple_repeat Simple_repeat 2 115 0 4728 173 42 5 chr13 27275406 27276329 -92468569 + L1MB7 LINE L1 5221 6182 -2 1688 168 46 11 chr13 27276552 27276837 -92468061 + AluJo SINE Alu 1 295 -17 221 0 35 0 chr13 27277496 27277525 -92467373 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 346 175 25 0 chr13 27278191 27278271 -92466627 + GA-rich Low_complexity Low_complexity 3 84 0 478 298 77 17 chr13 27278382 27278563 -92466335 - MIR3 SINE MIR 0 208 17 1902 128 4 4 chr13 27278830 27279137 -92465761 + AluSx SINE Alu 1 307 0 731 289 88 22 chr13 27279520 27279838 -92465060 - MER102b DNA MER1_type -2 339 1 263 270 189 66 chr13 27279927 27280123 -92464775 + MIR SINE MIR 20 239 -23 467 285 118 57 chr13 27280226 27280472 -92464426 - L3 LINE CR1 -137 1440 1180 300 263 158 0 chr13 27280494 27280589 -92464309 - MIR SINE MIR -65 197 88 1047 16 0 0 chr13 27280812 27280933 -92463965 + (TTTCC)n Simple_repeat Simple_repeat 2 122 0 2052 122 4 0 chr13 27280934 27281213 -92463685 - AluSq SINE Alu -32 281 2 602 301 64 30 chr13 27281270 27281536 -92463362 - L3 LINE CR1 -647 930 656 492 241 196 77 chr13 27281576 27281862 -92463036 - L2 LINE L2 -1 3271 2952 246 237 110 68 chr13 27282012 27282130 -92462768 - MIR SINE MIR -21 241 119 270 254 0 0 chr13 27282273 27282328 -92462570 + MIR SINE MIR 61 115 -147 6055 165 33 44 chr13 27282365 27284305 -92460593 + L1MC1 LINE L1 4066 5963 -370 2389 96 0 0 chr13 27284305 27284608 -92460290 + AluSg SINE Alu 1 303 -7 6055 165 33 44 chr13 27284608 27284965 -92459933 + L1MC1 LINE L1 5963 6323 -10 201 121 0 0 chr13 27284967 27285000 -92459898 + (CA)n Simple_repeat Simple_repeat 2 34 0 389 271 90 8 chr13 27285001 27285123 -92459775 + MIR SINE MIR 128 259 -3 282 234 62 0 chr13 27285130 27285194 -92459704 - MIR SINE MIR -155 107 40 2053 120 40 7 chr13 27285713 27286014 -92458884 - AluSx SINE Alu -1 311 1 303 28 0 0 chr13 27288587 27288623 -92456275 + (CA)n Simple_repeat Simple_repeat 2 37 0 512 250 18 43 chr13 27288655 27288758 -92456140 + MER112 DNA MER1_type 69 168 -92 1002 202 18 0 chr13 27288758 27288926 -92455972 - FAM SINE Alu -4 171 1 512 250 18 43 chr13 27288926 27288986 -92455912 + MER112 DNA MER1_type 168 228 -32 401 95 27 27 chr13 27289359 27289433 -92455465 + Alu SINE Alu 238 311 0 203 271 119 0 chr13 27290802 27290861 -92454037 + MIR SINE MIR 125 190 -72 180 242 0 129 chr13 27291092 27291154 -92453744 + L2 LINE L2 3239 3292 -21 187 281 0 0 chr13 27291756 27291813 -92453085 + L2 LINE L2 3257 3313 0 391 323 19 7 chr13 27292140 27292295 -92452603 - MER117 DNA MER1_type 0 197 41 384 246 25 49 chr13 27292297 27292419 -92452479 - L2 LINE L2 0 3313 3195 2057 119 26 3 chr13 27293350 27293653 -92451245 + AluSx SINE Alu 1 310 -2 391 241 11 0 chr13 27294415 27294502 -92450396 - L2 LINE L2 -31 3241 3154 237 304 43 22 chr13 27295882 27295974 -92448924 + MIR SINE MIR 48 141 -67 444 252 34 42 chr13 27296194 27296313 -92448585 + MIR3 SINE MIR 75 192 -16 2005 174 137 0 chr13 27296319 27296692 -92448206 + MSTB LTR MaLR 1 424 -2 299 273 23 0 chr13 27296784 27296872 -92448026 + CT-rich Low_complexity Low_complexity 1 90 0 302 295 48 23 chr13 27297184 27297327 -92447571 + MIR SINE MIR 18 133 -75 1951 127 3 10 chr13 27297534 27297826 -92447072 - AluSx SINE Alu -9 303 14 21 36 0 0 chr13 27297831 27297859 -92447039 + AT_rich Low_complexity Low_complexity 1 28 0 2310 86 0 0 chr13 27298466 27298771 -92446127 - AluSq SINE Alu 0 310 6 279 287 103 29 chr13 27300493 27300629 -92444269 + MIR3 SINE MIR 61 206 -2 2662 170 32 54 chr13 27300687 27301140 -92443758 + L1MB8 LINE L1 5293 5754 -424 2348 103 0 0 chr13 27301140 27301450 -92443448 + AluSx SINE Alu 1 310 -2 2662 170 32 54 chr13 27301450 27301462 -92443436 + L1MB8 LINE L1 5754 5765 -413 1256 83 0 6 chr13 27301462 27301642 -92443256 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 2662 170 32 54 chr13 27301642 27301769 -92443129 + L1MB8 LINE L1 5765 5873 -305 735 205 0 58 chr13 27301773 27301929 -92442969 + MLT1B LTR MaLR 192 338 -52 1942 133 18 4 chr13 27301951 27302257 -92442641 + AluSx SINE Alu 1 310 0 363 23 0 0 chr13 27302258 27302302 -92442596 + (CA)n Simple_repeat Simple_repeat 1 44 0 1839 98 16 112 chr13 27302302 27302668 -92442230 + L1MB7 LINE L1 5854 6184 0 216 135 0 0 chr13 27303882 27303919 -92440979 + (CA)n Simple_repeat Simple_repeat 1 37 0 249 310 60 9 chr13 27308068 27308184 -92436714 - L2 LINE L2 -59 3254 3133 188 333 58 33 chr13 27308238 27308358 -92436540 - L2 LINE L2 -179 3093 2971 393 22 0 0 chr13 27309215 27309261 -92435637 + (CA)n Simple_repeat Simple_repeat 2 47 0 306 172 0 17 chr13 27309339 27309397 -92435501 - L2 LINE L2 -1 3312 3256 1866 106 98 0 chr13 27309945 27310209 -92434689 + AluSp SINE Alu 2 291 -22 198 0 0 0 chr13 27310240 27310262 -92434636 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 234 91 0 0 chr13 27310266 27310299 -92434599 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 180 375 0 0 chr13 27311721 27311777 -92433121 + MIR SINE MIR 47 102 -160 200 351 37 12 chr13 27312541 27312646 -92432252 + MIR SINE MIR 30 133 -75 1427 36 24 0 chr13 27312696 27312862 -92432036 + L1PA4 LINE L1 5985 6154 -1 25 31 0 0 chr13 27312887 27312919 -92431979 + AT_rich Low_complexity Low_complexity 1 32 0 230 0 33 0 chr13 27313216 27313246 -92431652 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 610 253 58 25 chr13 27313412 27313825 -92431073 + MLT1H LTR MaLR 79 549 0 1012 159 23 0 chr13 27314675 27314851 -92430047 + MER5A DNA MER1_type 1 180 -9 831 225 18 0 chr13 27314851 27315020 -92429878 - MER5B DNA MER1_type -4 174 3 2058 141 0 7 chr13 27315888 27316185 -92428713 + AluSx SINE Alu 1 295 -17 265 179 0 0 chr13 27316308 27316364 -92428534 - MER5A DNA MER1_type -131 58 3 208 375 103 54 chr13 27317101 27317490 -92427408 - L2 LINE L2 0 3272 2865 405 295 79 7 chr13 27317844 27317983 -92426915 + MIR3 SINE MIR 41 189 -19 250 223 64 64 chr13 27319538 27319632 -92425266 - MIR3 SINE MIR 0 208 115 21 57 0 0 chr13 27321360 27321395 -92423503 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 27322698 27322720 -92422178 + GC_rich Low_complexity Low_complexity 1 22 0 237 330 71 0 chr13 27326088 27326200 -92418698 - L3 LINE CR1 -298 1279 1160 616 323 77 21 chr13 27326637 27326975 -92417923 - L3 LINE CR1 -572 1005 649 276 100 0 0 chr13 27326984 27327024 -92417874 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 253 159 63 63 chr13 27327529 27327592 -92417306 - L1ME4a LINE L1 -91 6030 5968 234 256 110 49 chr13 27328473 27328637 -92416261 - L2 LINE L2 -801 2513 2340 789 169 0 0 chr13 27328712 27328851 -92416047 + FLAM_A SINE Alu 1 139 0 3456 152 16 25 chr13 27329049 27329752 -92415146 - L1MB3 LINE L1 -330 5853 5160 321 307 108 48 chr13 27329931 27330309 -92414589 + L2 LINE L2 1987 2387 -927 931 159 90 16 chr13 27330619 27330808 -92414090 + MER20 DNA MER1_type 16 218 -1 1044 202 88 86 chr13 27330841 27331128 -92413770 + LTR16A1 LTR ERVL 26 316 -141 1571 194 80 14 chr13 27331128 27331479 -92413419 + MLT1A2 LTR MaLR 1 374 0 1044 202 88 86 chr13 27331479 27331622 -92413276 + LTR16A1 LTR ERVL 316 457 0 2247 119 61 3 chr13 27331933 27332277 -92412621 - THE1B LTR MaLR 0 364 1 219 290 94 22 chr13 27332332 27332470 -92412428 + L2 LINE L2 2710 2857 -457 2369 85 0 0 chr13 27332669 27332975 -92411923 - AluSx SINE Alu -6 306 1 496 282 122 0 chr13 27333154 27333310 -92411588 + MIR SINE MIR 12 186 -76 361 293 49 16 chr13 27333597 27333720 -92411178 - L2 LINE L2 -227 3045 2919 23 0 0 0 chr13 27333876 27333899 -92410999 + AT_rich Low_complexity Low_complexity 1 23 0 266 302 115 62 chr13 27333899 27334091 -92410807 - L2 LINE L2 -449 2865 2664 2083 105 7 3 chr13 27334346 27334640 -92410258 - AluSx SINE Alu -17 295 1 1255 310 76 54 chr13 27335165 27335579 -92409319 - L2 LINE L2 -585 2729 2325 1894 162 25 11 chr13 27335579 27335937 -92408961 + L1MA4 LINE L1 5937 6299 -1 1255 310 76 54 chr13 27335937 27336499 -92408399 - L2 LINE L2 -989 2325 1732 443 288 120 11 chr13 27336514 27336698 -92408200 + MER63A DNA MER1_type 5 208 -2 233 97 0 0 chr13 27337060 27337091 -92407807 + MSTB LTR MaLR 1 31 -395 1368 157 122 8 chr13 27338531 27338793 -92406105 - AluJo SINE Alu -16 296 5 222 283 0 0 chr13 27338969 27339022 -92405876 - L2 LINE L2 0 3272 3220 191 167 24 0 chr13 27339540 27339582 -92405316 + (TTA)n Simple_repeat Simple_repeat 3 45 0 407 287 109 11 chr13 27339589 27339763 -92405135 - L2 LINE L2 -16 3297 3107 235 284 12 12 chr13 27339766 27339847 -92405051 + L1MEd LINE L1 4 84 -6035 1200 110 0 0 chr13 27339910 27340083 -92404815 + AluSg/x SINE Alu 138 310 -2 1225 175 4 63 chr13 27341030 27341298 -92403600 - AluJo SINE Alu -22 290 39 355 357 77 0 chr13 27341526 27341694 -92403204 + L2 LINE L2 3091 3271 -1 1130 122 22 100 chr13 27342394 27342623 -92402275 - AluJo SINE Alu -23 289 79 220 214 22 67 chr13 27342876 27342965 -92401933 + T-rich Low_complexity Low_complexity 2 86 0 635 158 0 22 chr13 27343071 27343255 -92401643 + (CA)n Simple_repeat Simple_repeat 1 180 0 415 195 23 6 chr13 27343266 27343440 -92401458 + (CA)n Simple_repeat Simple_repeat 1 177 0 242 235 84 101 chr13 27344157 27344276 -92400622 + L2 LINE L2 3148 3264 -8 180 111 0 0 chr13 27345061 27345088 -92399810 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1387 113 5 0 chr13 27345130 27345333 -92399565 - AluSp SINE Alu -16 297 94 1498 152 40 14 chr13 27347374 27347679 -92397219 - AluJb SINE Alu 0 312 1 1693 168 42 0 chr13 27347744 27348030 -92396868 - AluSx SINE Alu -14 298 1 1315 150 0 141 chr13 27348095 27348455 -92396443 - AluJb SINE Alu 0 318 5 1527 205 16 44 chr13 27348923 27349289 -92395609 - MLT1A1 LTR MaLR 0 365 10 192 40 0 0 chr13 27349486 27349511 -92395387 + (CA)n Simple_repeat Simple_repeat 1 25 0 389 314 17 0 chr13 27349713 27349831 -92395067 - MIR SINE MIR -90 172 53 1384 157 12 0 chr13 27350152 27350400 -92394498 + L1MA8 LINE L1 6037 6287 -4 2147 99 23 0 chr13 27350875 27351177 -92393721 - AluSc SINE Alu 0 309 1 631 110 0 11 chr13 27351177 27351268 -92393630 - L1MC1 LINE L1 -10 6323 6234 317 324 10 10 chr13 27351763 27351875 -92393023 + MIR SINE MIR 41 151 -72 890 145 11 102 chr13 27352555 27352741 -92392157 - MER45A DNA AcHobo -5 173 5 2141 125 0 0 chr13 27352855 27353167 -92391731 - AluSx SINE Alu 0 312 1 580 243 38 19 chr13 27353415 27353625 -92391273 + L1 LINE L1 5148 5361 -785 22 0 0 0 chr13 27353760 27353782 -92391116 + AT_rich Low_complexity Low_complexity 1 22 0 2526 40 0 0 chr13 27353815 27354112 -92390786 - AluY SINE Alu -14 297 1 22 35 0 0 chr13 27354771 27354800 -92390098 + AT_rich Low_complexity Low_complexity 1 29 0 299 238 10 0 chr13 27354866 27354967 -92389931 + L1MA4 LINE L1 6196 6297 -3 392 168 106 9 chr13 27355819 27355932 -92388966 - MIR3 SINE MIR -1 207 84 881 270 37 4 chr13 27356219 27356460 -92388438 + MIR SINE MIR 10 258 -4 1707 160 17 3 chr13 27357779 27358072 -92386826 - AluJo SINE Alu -15 297 1 1199 123 39 15 chr13 27358832 27359035 -92385863 + AluJo SINE Alu 83 290 -22 845 267 125 86 chr13 27359121 27359575 -92385323 - MLT1L LTR MaLR 0 615 131 462 36 0 0 chr13 27359575 27359631 -92385267 + (CA)n Simple_repeat Simple_repeat 2 57 0 845 267 125 86 chr13 27359631 27359768 -92385130 - MLT1L LTR MaLR -484 131 1 350 268 125 18 chr13 27359940 27360052 -92384846 + MIR3 SINE MIR 73 196 -12 230 245 20 0 chr13 27360182 27360231 -92384667 - L2 LINE L2 0 3272 3223 331 203 153 17 chr13 27360262 27360380 -92384518 + MLT1J LTR MaLR 336 469 -42 1750 166 75 51 chr13 27360425 27360503 -92384395 + MLT1B LTR MaLR 1 76 -314 2154 111 3 0 chr13 27360503 27360809 -92384089 - AluSx SINE Alu -5 307 1 1750 166 75 51 chr13 27360809 27360833 -92384065 + MLT1B LTR MaLR 76 98 -292 1404 186 86 43 chr13 27360833 27361038 -92383860 - MLT1A1 LTR MaLR -1 364 135 2131 95 3 0 chr13 27361038 27361357 -92383541 - AluSq SINE Alu 0 320 1 1404 186 86 43 chr13 27361357 27361499 -92383399 - MLT1A1 LTR MaLR -230 135 1 1750 166 75 51 chr13 27361499 27361769 -92383129 + MLT1B LTR MaLR 98 383 -7 322 286 77 51 chr13 27361943 27362139 -92382759 + L1M4 LINE L1 3220 3420 -2726 22 35 0 0 chr13 27362686 27362715 -92382183 + AT_rich Low_complexity Low_complexity 1 29 0 511 148 23 23 chr13 27362891 27363019 -92381879 + GA-rich Low_complexity Low_complexity 1 128 0 646 156 63 1 chr13 27363206 27363335 -92381563 + L1MB8 LINE L1 5730 5873 -295 735 205 0 58 chr13 27363339 27363495 -92381403 + MLT1B LTR MaLR 192 338 -52 1560 141 4 0 chr13 27363516 27363750 -92381148 + AluSx SINE Alu 1 235 -77 1563 187 7 11 chr13 27364698 27365005 -92379893 + AluJo SINE Alu 3 308 0 467 153 27 121 chr13 27366498 27366537 -92378361 - L1ME1 LINE L1 0 6334 6293 631 165 55 31 chr13 27366537 27366664 -92378234 + FLAM_A SINE Alu 1 130 -3 467 153 27 121 chr13 27366664 27366753 -92378145 - L1ME1 LINE L1 -41 6293 6058 228 154 0 0 chr13 27366753 27366792 -92378106 - MER3 DNA MER1_type -160 49 11 2488 204 8 20 chr13 27366792 27367288 -92377610 - L1ME1 LINE L1 -148 6018 5529 2423 67 0 0 chr13 27367452 27367749 -92377149 + AluY SINE Alu 1 297 -14 284 321 42 60 chr13 27368150 27368318 -92376580 - L3 LINE CR1 -211 1366 1202 2110 42 109 14 chr13 27368759 27369043 -92375855 + AluY SINE Alu 1 311 0 3567 214 94 70 chr13 27369214 27370692 -92374206 + MER109 Unknown Unknown 7 1412 -1020 237 275 49 21 chr13 27370975 27371117 -92373781 + (CCCG)n Simple_repeat Simple_repeat 4 149 0 30 45 0 0 chr13 27371316 27371360 -92373538 + GC_rich Low_complexity Low_complexity 1 44 0 1801 132 11 14 chr13 27372231 27372511 -92372387 + AluJo SINE Alu 4 282 -30 251 284 0 0 chr13 27373201 27373268 -92371630 + MER52A LTR ERV1 1 67 -1688 811 213 58 45 chr13 27373464 27373740 -92371158 + MER52A LTR ERV1 26 357 -921 257 246 0 31 chr13 27373989 27374054 -92370844 + MLT1I LTR MaLR 345 407 -2 11509 189 63 32 chr13 27374138 27375281 -92369617 - L1MCa LINE L1 -2557 3869 2763 1865 129 80 0 chr13 27375281 27375567 -92369331 - AluSx SINE Alu -1 311 3 11509 189 63 32 chr13 27375567 27376149 -92368749 - L1MCa LINE L1 -3663 2763 2201 1657 96 0 0 chr13 27376149 27376357 -92368541 - AluSg/x SINE Alu -18 294 87 11509 189 63 32 chr13 27376357 27377384 -92367514 - L1MCa LINE L1 -4225 2201 1208 1871 125 0 11 chr13 27377384 27377648 -92367250 + AluSx SINE Alu 39 299 -13 11509 189 63 32 chr13 27377648 27377732 -92367166 - L1MCa LINE L1 -5218 1208 1128 1619 121 0 14 chr13 27377732 27377955 -92366943 - AluSg SINE Alu -84 226 7 11509 189 63 32 chr13 27377955 27378207 -92366691 - L1MCa LINE L1 -5298 1128 885 1953 91 80 4 chr13 27378207 27378481 -92366417 - AluSc SINE Alu -14 295 1 11509 189 63 32 chr13 27378481 27379114 -92365784 - L1MCa LINE L1 -5541 885 32 736 193 22 7 chr13 27379208 27379343 -92365555 + AluJb SINE Alu 117 253 -59 5049 75 5 30 chr13 27379343 27379814 -92365084 + L1PB1 LINE L1 5502 5953 -198 2105 106 7 14 chr13 27379814 27380106 -92364792 + AluSx SINE Alu 1 290 -22 5049 75 5 30 chr13 27380106 27380300 -92364598 + L1PB1 LINE L1 5953 6150 -1 1919 252 85 41 chr13 27380323 27381229 -92363669 + HAL1b LINE L1 62 1007 -341 303 273 23 76 chr13 27381273 27381445 -92363453 + HAL1b LINE L1 1115 1277 -71 894 422 26 49 chr13 27381459 27381767 -92363131 + AluJo SINE Alu 1 301 -1 181 148 19 19 chr13 27381815 27381869 -92363029 + (TA)n Simple_repeat Simple_repeat 2 55 0 1942 118 37 0 chr13 27381907 27382177 -92362721 - AluSx SINE Alu -32 280 1 753 251 11 6 chr13 27382432 27382607 -92362291 - MER5B DNA MER1_type -2 176 1 22 35 0 0 chr13 27382729 27382758 -92362140 + AT_rich Low_complexity Low_complexity 1 29 0 5370 123 15 15 chr13 27382882 27383383 -92361515 - L1PA15 LINE L1 0 6165 5662 1900 72 8 0 chr13 27383383 27383618 -92361280 - AluSg SINE Alu -13 297 61 5370 123 15 15 chr13 27383618 27383928 -92360970 - L1PA15 LINE L1 -502 5663 5354 401 215 123 23 chr13 27383936 27384066 -92360832 - MIR SINE MIR -118 144 2 210 279 33 0 chr13 27384585 27384646 -92360252 + MIR SINE MIR 127 189 -73 1834 88 4 0 chr13 27384934 27385172 -92359726 - AluSx SINE Alu -10 302 64 2219 157 8 8 chr13 27386474 27386837 -92358061 - L1PA16 LINE L1 -2 6164 5802 218 275 8 100 chr13 27386847 27386967 -92357931 - MIR SINE MIR -139 123 15 451 162 162 20 chr13 27387959 27388058 -92356840 + FLAM_A SINE Alu 2 114 -19 390 225 54 133 chr13 27388283 27388500 -92356398 - MIR SINE MIR -6 256 58 2189 180 23 2 chr13 27388500 27388895 -92356003 - L1MB2 LINE L1 0 6171 5769 390 225 54 133 chr13 27388895 27388925 -92355973 - MIR SINE MIR -204 58 27 1542 183 6 45 chr13 27389866 27390178 -92354720 + AluJb SINE Alu 1 300 -12 852 122 0 68 chr13 27390594 27390741 -92354157 - FLAM_C SINE Alu -6 137 1 3860 122 125 49 chr13 27390979 27391709 -92353189 + LTR1 LTR ERV1 1 785 0 2312 123 0 0 chr13 27392786 27393096 -92351802 + AluSx SINE Alu 1 310 -2 184 259 62 12 chr13 27394119 27394200 -92350698 - MIR SINE MIR -52 210 126 198 359 51 0 chr13 27394287 27394365 -92350533 - MIR SINE MIR -24 238 157 200 365 56 0 chr13 27394541 27394648 -92350250 + L2 LINE L2 3142 3254 -18 1675 146 0 19 chr13 27394655 27394923 -92349975 + AluJo SINE Alu 34 296 -16 224 189 0 0 chr13 27395162 27395199 -92349699 - MIR SINE MIR -70 192 156 21 57 0 0 chr13 27395317 27395352 -92349546 + AT_rich Low_complexity Low_complexity 1 35 0 338 301 76 65 chr13 27395353 27395629 -92349269 - L1ME3A LINE L1 -98 6072 5794 466 277 36 15 chr13 27395691 27395828 -92349070 - MIR SINE MIR -119 143 4 480 58 207 69 chr13 27396781 27396868 -92348030 + HY3 scRNA scRNA 1 99 -2 2302 113 0 0 chr13 27396870 27397171 -92347727 - AluSq SINE Alu -12 301 1 708 319 42 7 chr13 27397399 27397537 -92347361 - LTR16C LTR ERVL -6 485 353 2512 83 0 0 chr13 27397537 27397849 -92347049 + AluSx SINE Alu 1 312 0 708 319 42 7 chr13 27397849 27397998 -92346900 - LTR16C LTR ERVL -138 353 188 337 199 139 60 chr13 27398124 27398275 -92346623 - L1ME4a LINE L1 -229 5892 5730 657 243 83 17 chr13 27399029 27399210 -92345688 - MIR SINE MIR -47 215 23 2371 96 3 6 chr13 27399465 27399779 -92345119 - AluSq SINE Alu 0 313 1 634 168 23 30 chr13 27400276 27400407 -92344491 - FLAM_A SINE Alu 0 133 4 207 100 0 0 chr13 27400494 27400524 -92344374 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 334 267 22 0 chr13 27400570 27400660 -92344238 - L1MC4 LINE L1 -1337 6705 6614 582 228 0 0 chr13 27400665 27400977 -92343921 + (TA)n Simple_repeat Simple_repeat 1 312 0 319 308 0 0 chr13 27400978 27401069 -92343829 - L1MC4 LINE L1 -1339 6703 6613 234 290 14 14 chr13 27401337 27401406 -92343492 + L3 LINE CR1 327 395 -1182 472 240 106 39 chr13 27401540 27401719 -92343179 + L3 LINE CR1 1206 1396 -181 672 184 22 7 chr13 27402300 27402436 -92342462 + L1MC2 LINE L1 6082 6219 -125 890 163 34 34 chr13 27402436 27402614 -92342284 + AluJo SINE Alu 121 298 -14 569 210 17 17 chr13 27402623 27402742 -92342156 + L1MC2 LINE L1 6226 6344 0 306 359 84 18 chr13 27402902 27403069 -92341829 + L3 LINE CR1 1398 1575 -2 1933 139 0 37 chr13 27404324 27404619 -92340279 + AluJo SINE Alu 1 284 -28 204 67 0 0 chr13 27404619 27404649 -92340249 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 27405037 27405058 -92339840 + AT_rich Low_complexity Low_complexity 1 21 0 908 137 0 0 chr13 27405556 27405680 -92339218 - FLAM_C SINE Alu -17 126 3 525 272 147 5 chr13 27406185 27406376 -92338522 + MIR SINE MIR 2 219 -43 2187 114 10 0 chr13 27407093 27407390 -92337508 + AluSx SINE Alu 1 300 -12 22 70 0 0 chr13 27407534 27407577 -92337321 + AT_rich Low_complexity Low_complexity 1 43 0 1980 157 14 0 chr13 27408811 27409105 -92335793 - AluJo SINE Alu -14 298 1 247 390 19 0 chr13 27409792 27409897 -92335001 + MIR SINE MIR 24 130 -78 2368 72 6 28 chr13 27410051 27410371 -92334527 - AluSq SINE Alu 0 313 1 511 280 89 54 chr13 27410653 27410901 -92333997 + L2 LINE L2 2192 2430 -884 1702 155 56 25 chr13 27410901 27411185 -92333713 + AluJo SINE Alu 1 293 -19 2444 68 7 0 chr13 27411189 27411498 -92333400 + AluY SINE Alu 1 311 0 511 280 89 54 chr13 27411498 27411558 -92333340 + L2 LINE L2 2432 2516 -798 433 308 168 22 chr13 27411644 27412050 -92332848 + L2 LINE L2 2794 3272 0 1834 164 10 3 chr13 27412152 27412451 -92332447 + AluJb SINE Alu 2 302 -10 1010 149 30 6 chr13 27412453 27412621 -92332277 + AluJo/FRAM SINE Alu 128 299 -13 1389 269 91 61 chr13 27413008 27413060 -92331838 + L1M4 LINE L1 3463 3512 -2634 1978 117 17 7 chr13 27413060 27413378 -92331520 + AluSq SINE Alu 1 313 0 1389 269 91 61 chr13 27413378 27414269 -92330629 + L1M4 LINE L1 3512 4434 -1712 715 208 8 0 chr13 27414272 27414392 -92330506 - FLAM_C SINE Alu -10 123 3 987 306 57 26 chr13 27414409 27414785 -92330113 + L1ME4a LINE L1 3588 3992 -2154 1191 265 104 19 chr13 27414785 27415200 -92329698 - MLT1J2 LTR MaLR 0 450 1 987 306 57 26 chr13 27415200 27415438 -92329460 + L1ME4a LINE L1 3992 4221 -1925 268 111 0 0 chr13 27416220 27416256 -92328642 + MLT1I LTR MaLR 370 405 -4 477 253 92 89 chr13 27416259 27416563 -92328335 - MLT1I LTR MaLR -14 395 91 2150 122 0 16 chr13 27416563 27416875 -92328023 - AluSx SINE Alu -5 307 1 1224 272 43 6 chr13 27417165 27417489 -92327409 + MLT1I LTR MaLR 74 409 0 2063 165 20 17 chr13 27417559 27417905 -92326993 + MER7A DNA MER2_type 1 345 -1 298 230 105 47 chr13 27417927 27418118 -92326780 + L1ME4a LINE L1 4457 4658 -1488 303 306 9 27 chr13 27418119 27418230 -92326668 + MIR SINE MIR 154 262 0 309 278 80 20 chr13 27418297 27418448 -92326450 + L1ME4a LINE L1 4930 5089 -1057 311 308 36 36 chr13 27418591 27418812 -92326086 + L1ME4a LINE L1 5255 5475 -2333 465 243 77 0 chr13 27420666 27420835 -92324063 + L1ME4a LINE L1 5938 6119 -2 2586 62 0 0 chr13 27421897 27422203 -92322695 - AluY SINE Alu -5 306 1 1629 155 3 44 chr13 27422489 27422786 -92322112 - AluJb SINE Alu -22 290 6 354 200 80 38 chr13 27422884 27423047 -92321851 + LTR16A LTR ERVL 1 168 -282 532 299 116 39 chr13 27423052 27423332 -92321566 + L2 LINE L2 2852 3176 -137 819 145 15 8 chr13 27423332 27423463 -92321435 - FLAM_C SINE Alu 0 133 2 532 299 116 39 chr13 27423463 27423597 -92321301 + L2 LINE L2 3176 3298 -15 321 215 65 102 chr13 27423761 27423947 -92320951 - MER97c DNA MER1_type? 0 1090 716 352 202 167 0 chr13 27423959 27424043 -92320855 - MLT1I LTR MaLR -469 98 1 * 872 179 100 22 chr13 27424043 27424248 -92320650 - MER97c DNA MER1_type? -864 226 4 2184 177 34 45 chr13 27424285 27424753 -92320145 + MLT1C LTR MaLR 1 463 -4 738 214 0 0 chr13 27424869 27424986 -92319912 + FLAM_C SINE Alu 2 118 -15 22 35 0 0 chr13 27425006 27425035 -92319863 + AT_rich Low_complexity Low_complexity 1 29 0 2448 80 3 0 chr13 27425665 27425967 -92318931 - AluSx SINE Alu -7 305 3 331 225 233 8 chr13 27426940 27427060 -92317838 + MIR SINE MIR 116 262 0 315 362 86 18 chr13 27427511 27427848 -92317050 + L2 LINE L2 2618 2977 -337 1925 160 0 19 chr13 27427907 27428220 -92316678 - AluSx SINE Alu -5 307 1 257 347 113 20 chr13 27428220 27428361 -92316537 + L2 LINE L2 3106 3263 -9 540 261 0 36 chr13 27428699 27428837 -92316061 + FLAM_A SINE Alu 1 133 0 181 271 0 43 chr13 27428873 27428943 -92315955 + L2 LINE L2 2836 2902 -412 427 258 123 31 chr13 27429145 27429308 -92315590 + MIR SINE MIR 84 261 -1 274 333 28 9 chr13 27429372 27429480 -92315418 + L2 LINE L2 3161 3270 -2 336 282 145 0 chr13 27429493 27429610 -92315288 + MIR SINE MIR 59 192 -70 321 298 145 45 chr13 27429938 27430180 -92314718 - L1M2 LINE L1 -5599 1250 985 2339 156 14 0 chr13 27431001 27431360 -92313538 + MER47A DNA MER2_type 3 366 0 292 293 95 0 chr13 27431373 27431489 -92313409 - MIR3 SINE MIR -52 156 30 208 313 94 10 chr13 27431655 27431751 -92313147 - L2 LINE L2 -647 2667 2564 1798 163 0 10 chr13 27431955 27432266 -92312632 + AluJb SINE Alu 1 308 0 314 277 0 0 chr13 27432356 27432421 -92312477 + L2 LINE L2 3242 3306 -7 23 54 0 0 chr13 27433146 27433183 -92311715 + AT_rich Low_complexity Low_complexity 1 37 0 796 291 57 0 chr13 27433626 27433873 -92311025 + MIR SINE MIR 2 262 0 2197 114 3 0 chr13 27434085 27434392 -92310506 - AluSp SINE Alu -5 308 1 197 225 75 0 chr13 27434806 27434846 -92310052 + L2 LINE L2 3214 3256 -16 469 223 25 33 chr13 27435097 27435218 -92309680 - L1ME1 LINE L1 -41 6125 6006 180 413 73 34 chr13 27435737 27435943 -92308955 - L2 LINE L2 -54 3218 3005 866 333 138 52 chr13 27436189 27437265 -92307633 + L3 LINE CR1 1 1168 -409 239 313 196 9 chr13 27437380 27437492 -92307406 + MIR SINE MIR 23 155 -107 1154 139 0 97 chr13 27437585 27437823 -92307075 + MER20 DNA MER1_type 1 215 -4 181 214 157 29 chr13 27437831 27437901 -92306997 + L2 LINE L2 3139 3217 -55 1036 131 50 0 chr13 27438026 27438186 -92306712 + FAM SINE Alu 1 168 -7 233 355 66 28 chr13 27439405 27439616 -92305282 + L2 LINE L2 1292 1510 -1804 288 177 0 32 chr13 27439617 27439679 -92305219 - L2 LINE L2 -973 2341 2282 739 308 186 35 chr13 27439708 27440151 -92304747 + L2 LINE L2 1505 1880 -1434 1489 172 0 15 chr13 27440151 27440413 -92304485 - AluJo SINE Alu -6 306 49 739 308 186 35 chr13 27440413 27440608 -92304290 + L2 LINE L2 1880 2044 -1270 1887 149 0 14 chr13 27440608 27440903 -92303995 + AluJb SINE Alu 3 293 -19 739 308 186 35 chr13 27440903 27441342 -92303556 + L2 LINE L2 2044 2746 -568 2356 89 0 0 chr13 27441546 27441838 -92303060 + AluSq SINE Alu 1 292 -21 395 258 65 52 chr13 27441947 27442102 -92302796 + MIR SINE MIR 47 203 -59 452 215 129 0 chr13 27442662 27442755 -92302143 + FLAM_A SINE Alu 1 105 -37 253 281 0 0 chr13 27443262 27443319 -92301579 - L2 LINE L2 -69 3244 3188 985 83 15 8 chr13 27443400 27443532 -92301366 + AluSq/x SINE Alu 1 133 -180 2409 85 0 0 chr13 27443855 27444150 -92300748 - AluSg SINE Alu -15 295 1 375 222 191 16 chr13 27444597 27444723 -92300175 - L2 LINE L2 -19 3294 3147 1362 224 120 19 chr13 27444897 27445313 -92299585 - LTR40b LTR ERVL -4 458 1 423 371 10 10 chr13 27445329 27445534 -92299364 - L2 LINE L2 -420 2894 2690 1601 152 27 40 chr13 27445538 27445835 -92299063 + AluJo SINE Alu 1 293 -19 871 69 9 9 chr13 27445927 27446043 -92298855 - AluSg/x SINE Alu -12 300 185 4318 129 33 14 chr13 27446205 27446556 -92298342 - L1MB3 LINE L1 -1 6182 5839 2153 114 0 29 chr13 27446556 27446871 -92298027 - AluSq SINE Alu -7 306 1 4318 129 33 14 chr13 27446871 27447211 -92297687 - L1MB3 LINE L1 -344 5839 5478 254 287 81 59 chr13 27447253 27447389 -92297509 + MER5A DNA MER1_type 1 139 -50 378 0 0 0 chr13 27447389 27447431 -92297467 + (TG)n Simple_repeat Simple_repeat 1 42 0 1773 144 33 0 chr13 27447433 27447703 -92297195 - AluJo SINE Alu -33 279 1 939 236 68 84 chr13 27448457 27448911 -92295987 - MER39 LTR ERV1 0 707 261 1794 147 17 13 chr13 27449074 27449373 -92295525 - AluJo SINE Alu -12 300 1 4513 80 5 0 chr13 27449828 27450379 -92294519 - MER41A LTR ERV1 0 554 1 328 286 20 10 chr13 27451045 27451143 -92293755 - MER5A DNA MER1_type -80 109 11 2209 105 20 0 chr13 27451455 27451749 -92293149 - AluSx SINE Alu -12 300 1 1330 192 65 73 chr13 27452354 27452724 -92292174 - MER93b LTR ERV1 0 373 7 2301 97 0 0 chr13 27452734 27453023 -92291875 - AluSq SINE Alu -24 289 1 657 200 200 0 chr13 27453242 27453407 -92291491 + MSTB1 LTR MaLR 1 198 -259 333 0 0 0 chr13 27453417 27453454 -92291444 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 606 191 0 0 chr13 27453467 27453561 -92291337 - FLAM_A SINE Alu -36 106 13 1016 178 44 40 chr13 27453561 27453786 -92291112 + MSTB1 LTR MaLR 170 395 -37 409 264 89 72 chr13 27453843 27454103 -92290795 + MLT1I LTR MaLR 102 369 -40 180 0 0 0 chr13 27454103 27454123 -92290775 + (TG)n Simple_repeat Simple_repeat 2 21 0 409 264 89 72 chr13 27454123 27454154 -92290744 + MLT1I LTR MaLR 369 398 -11 1393 171 0 17 chr13 27455030 27455269 -92289629 + AluJb SINE Alu 76 310 -2 733 283 57 9 chr13 27455339 27455569 -92289329 + MIR SINE MIR 4 244 -18 593 247 19 13 chr13 27455647 27455805 -92289093 + MIR SINE MIR 84 242 -20 1065 170 0 66 chr13 27456678 27456713 -92288185 + AluJo SINE Alu 87 123 -189 2231 113 0 3 chr13 27456713 27457014 -92287884 - AluSx SINE Alu -12 300 1 1065 170 0 66 chr13 27457014 27457219 -92287679 + AluJo SINE Alu 123 311 -1 754 126 15 7 chr13 27457219 27457354 -92287544 + GA-rich Low_complexity Low_complexity 1 136 0 609 126 42 14 chr13 27457390 27457533 -92287365 + GA-rich Low_complexity Low_complexity 2 148 0 3075 143 10 8 chr13 27457848 27458329 -92286569 + MER31A LTR ERV1 4 485 0 29 0 0 0 chr13 27459689 27459718 -92285180 + AT_rich Low_complexity Low_complexity 1 29 0 1305 117 44 19 chr13 27459832 27460038 -92284860 + AluSg/x SINE Alu 81 291 -19 1242 191 23 27 chr13 27460417 27460679 -92284219 + AluJo SINE Alu 42 302 -10 180 0 0 0 chr13 27460859 27460879 -92284019 + (A)n Simple_repeat Simple_repeat 1 20 0 263 208 0 0 chr13 27462119 27462167 -92282731 - MER5B DNA MER1_type 0 178 131 1747 154 0 40 chr13 27462209 27462508 -92282390 - AluJo SINE Alu -25 287 1 4372 57 21 4 chr13 27462526 27463085 -92281813 + L1P3 LINE L1 1068 1636 -4825 2016 115 11 7 chr13 27463260 27463547 -92281351 - AluSx SINE Alu -24 288 1 491 365 12 0 chr13 27464553 27464723 -92280175 - L2 LINE L2 -280 3033 2862 241 379 0 11 chr13 27464730 27464825 -92280073 + L2 LINE L2 3142 3235 -37 372 297 125 0 chr13 27465221 27465349 -92279549 - MIR SINE MIR -114 148 5 219 280 42 93 chr13 27466968 27467086 -92277812 + MIR SINE MIR 16 127 -81 207 311 75 38 chr13 27467072 27467178 -92277720 - L2 LINE L2 -27 3245 3136 * 4523 140 28 17 chr13 27467369 27468121 -92276777 + L1MB3 LINE L1 5423 6182 -1 524 314 77 23 chr13 27468537 27468925 -92275973 - LTR33 LTR ERVL -27 494 86 699 170 65 26 chr13 27468936 27469089 -92275809 - MER5A DNA MER1_type -24 165 7 322 272 49 0 chr13 27469089 27469170 -92275728 - LTR33 LTR ERVL -420 101 17 252 0 0 0 chr13 27469173 27469201 -92275697 + (TTTAA)n Simple_repeat Simple_repeat 4 31 0 204 154 103 0 chr13 27469350 27469389 -92275509 + L3 LINE CR1 1534 1576 -1 209 143 24 24 chr13 27470433 27470475 -92274423 - L2 LINE L2 -1 3271 3230 244 306 185 9 chr13 27470573 27470681 -92274217 + L2 LINE L2 3143 3269 -3 1332 184 94 3 chr13 27471444 27471732 -92273166 - MER63 DNA MER1_type 0 1061 748 268 173 0 19 chr13 27471730 27471782 -92273116 - MER63 DNA MER1_type -159 51 1 * 816 134 47 35 chr13 27472020 27472166 -92272732 - L1MB8 LINE L1 -4 6174 6024 2266 96 3 0 chr13 27472166 27472469 -92272429 + AluSx SINE Alu 1 304 -8 816 134 47 35 chr13 27472469 27472494 -92272404 - L1MB8 LINE L1 -154 6024 6001 4257 50 0 2 chr13 27472494 27473014 -92271884 + L1PA4 LINE L1 5637 6155 0 4046 165 29 30 chr13 27473009 27474176 -92270722 - L1MB7 LINE L1 -145 6039 4872 * 622 265 61 5 chr13 27474373 27474569 -92270329 - MLT1J2 LTR MaLR 0 450 244 973 255 56 19 chr13 27474605 27474872 -92270026 - MLT1J2 LTR MaLR -173 277 1 288 146 164 0 chr13 27476455 27476510 -92268388 - MIR SINE MIR -116 146 83 376 260 48 42 chr13 27477316 27477729 -92267169 - MLT1H LTR MaLR -32 517 20 2171 192 65 9 chr13 27479240 27479711 -92265187 + MLT1F LTR MaLR 1 541 -1 23 33 0 0 chr13 27479851 27479881 -92265017 + AT_rich Low_complexity Low_complexity 1 30 0 269 312 196 0 chr13 27480213 27480351 -92264547 + MIR SINE MIR 49 213 -49 1651 179 7 3 chr13 27480659 27480966 -92263932 + AluJo SINE Alu 1 308 -4 660 223 73 10 chr13 27482113 27482319 -92262579 - L1MC5 LINE L1 -64 7897 7679 972 160 83 73 chr13 27482359 27482433 -92262465 - L1MC5 LINE L1 -370 7591 7519 2167 109 3 0 chr13 27482433 27482745 -92262153 + AluSp SINE Alu 1 313 0 972 160 83 73 chr13 27482745 27482983 -92261915 - L1MC5 LINE L1 -442 7519 7276 4327 168 31 46 chr13 27483035 27484209 -92260689 - L1MB3 LINE L1 -23 6160 5015 1305 228 37 67 chr13 27484199 27484691 -92260207 - L1MC5 LINE L1 -733 7228 6752 * 2104 98 7 0 chr13 27484765 27485050 -92259848 + AluSq SINE Alu 1 287 -26 1053 308 80 13 chr13 27485209 27485661 -92259237 - L2 LINE L2 -993 2321 1840 1352 139 0 39 chr13 27485924 27486154 -92258744 - AluSg/x SINE Alu -10 300 80 1124 129 0 38 chr13 27486154 27486363 -92258535 - L1MB2 LINE L1 -47 6124 5924 1616 157 3 63 chr13 27486391 27486709 -92258189 + AluJo SINE Alu 1 299 -13 384 290 0 0 chr13 27487554 27487647 -92257251 + MIR SINE MIR 33 125 -83 412 288 159 36 chr13 27487781 27488247 -92256651 + L2 LINE L2 2737 3278 -35 1143 122 22 0 chr13 27488252 27488270 -92256628 + AluSc SINE Alu 113 129 -180 2261 79 20 0 chr13 27488270 27488575 -92256323 + AluY SINE Alu 1 311 0 1143 122 22 0 chr13 27488575 27488737 -92256161 + AluSc SINE Alu 129 297 -12 2098 98 3 3 chr13 27488841 27489136 -92255762 + AluSp SINE Alu 7 301 -12 371 279 90 71 chr13 27489406 27489729 -92255169 - L1ME LINE L1 -529 5592 5264 311 235 92 0 chr13 27489734 27489832 -92255066 - L1ME LINE L1 -852 5294 5188 1746 149 0 43 chr13 27490226 27490654 -92254244 + AluJo SINE Alu 1 415 0 1160 159 5 10 chr13 27491669 27491876 -92253022 - AluJo SINE Alu -22 290 85 219 291 38 13 chr13 27492376 27492455 -92252443 - L2 LINE L2 -1 3312 3232 268 264 132 37 chr13 27493247 27493307 -92251591 - MIR SINE MIR 0 262 209 2021 109 0 0 chr13 27493307 27493637 -92251261 - AluY SINE Alu 0 330 1 268 264 132 37 chr13 27493637 27493819 -92251079 - MIR SINE MIR -53 209 3 354 188 0 0 chr13 27495780 27495849 -92249049 - L1MA9 LINE L1 -5 6307 6239 449 288 46 7 chr13 27495855 27496008 -92248890 - L1MDa LINE L1 -3938 2602 2444 755 233 56 11 chr13 27496072 27496252 -92248646 - MER5A DNA MER1_type -1 188 1 5607 116 13 14 chr13 27496277 27497116 -92247782 + L1PA15 LINE L1 5328 6165 0 2088 119 0 0 chr13 27497131 27497424 -92247474 + AluSx SINE Alu 5 297 -15 344 313 8 45 chr13 27498077 27498211 -92246687 - L2 LINE L2 -217 3055 2927 210 143 0 0 chr13 27498247 27498282 -92246616 + (A)n Simple_repeat Simple_repeat 1 35 0 1257 251 99 97 chr13 27498356 27498762 -92246136 + MER45C DNA AcHobo 1 410 -543 1459 182 124 30 chr13 27498762 27499124 -92245774 - MSTD LTR MaLR 0 396 1 1257 251 99 97 chr13 27499124 27499365 -92245533 + MER45C DNA AcHobo 410 649 -304 493 253 132 66 chr13 27499523 27499903 -92244995 + L2 LINE L2 1305 1709 -1605 254 345 42 21 chr13 27499966 27500108 -92244790 - L2 LINE L2 0 3313 3169 400 282 48 8 chr13 27500578 27500702 -92244196 + L2 LINE L2 1824 1952 -1362 338 360 71 0 chr13 27500839 27501064 -92243834 + L2 LINE L2 2438 2678 -636 966 150 0 0 chr13 27501138 27501285 -92243613 - AluSg/x SINE Alu -19 293 147 245 273 62 135 chr13 27501352 27501656 -92243242 + L2 LINE L2 2809 3090 -182 2108 123 3 0 chr13 27501997 27502306 -92242592 - AluSp SINE Alu -3 310 1 21 0 0 0 chr13 27503459 27503480 -92241418 + AT_rich Low_complexity Low_complexity 1 21 0 823 184 92 0 chr13 27503960 27504123 -92240775 + MER45A DNA AcHobo 1 178 0 1701 179 7 0 chr13 27505565 27505861 -92239037 - AluJb SINE Alu -11 301 4 1597 166 28 7 chr13 27506388 27506677 -92238221 + AluJo SINE Alu 3 297 -15 411 21 0 0 chr13 27506945 27506993 -92237905 + (TG)n Simple_repeat Simple_repeat 1 48 0 1794 153 37 3 chr13 27507074 27507374 -92237524 + AluSx SINE Alu 1 310 -2 1697 127 69 0 chr13 27507496 27507771 -92237127 - AluSx SINE Alu -16 296 3 207 318 45 0 chr13 27508366 27508432 -92236466 + MIR SINE MIR 76 144 -118 1657 109 0 0 chr13 27508646 27508875 -92236023 + AluSg/x SINE Alu 66 294 -16 578 290 115 71 chr13 27509529 27509939 -92234959 - MLT1K LTR MaLR -158 430 3 421 327 106 56 chr13 27510313 27510757 -92234141 + L2 LINE L2 2807 3272 0 1611 191 0 28 chr13 27512142 27512462 -92232436 + AluJo SINE Alu 1 311 -1 250 380 25 8 chr13 27512604 27512725 -92232173 - MIR SINE MIR -66 142 20 360 319 120 62 chr13 27514019 27514753 -92230145 + L2 LINE L2 2323 3115 -157 276 264 111 0 chr13 27515391 27515463 -92229435 + L2 LINE L2 3234 3313 0 180 238 214 24 chr13 27515479 27515563 -92229335 - MIR SINE MIR -162 100 1 * 866 263 35 26 chr13 27515563 27515728 -92229170 + MIR SINE MIR 84 250 -12 2152 125 36 31 chr13 27516300 27516659 -92228239 - THE1B LTR MaLR -2 362 2 361 156 0 26 chr13 27516693 27516770 -92228128 - L1MA7 LINE L1 -3 6288 6214 727 193 34 2 chr13 27517790 27517976 -92226922 + L1MB3 LINE L1 5258 5458 -698 * 1639 208 15 43 chr13 27517970 27518369 -92226529 + L1MB3 LINE L1 5753 6140 -43 241 119 24 24 chr13 27518371 27518413 -92226485 + Alu SINE Alu 2 43 -257 481 193 0 107 chr13 27519907 27520047 -92224851 - MER5B DNA MER1_type -53 125 1 401 225 18 9 chr13 27520872 27520983 -92223915 + MER69 DNA AcHobo 1 112 -2414 526 104 0 0 chr13 27521866 27521943 -92222955 + MER31B LTR ERV1 3 79 -387 2310 206 22 64 chr13 27521944 27522022 -92222876 + MER67B LTR ERV1 1 81 -580 2429 114 22 8 chr13 27522022 27522390 -92222508 - THE1C LTR MaLR 0 375 3 2310 206 22 64 chr13 27522390 27522997 -92221901 + MER67B LTR ERV1 81 657 -4 775 280 82 20 chr13 27523006 27523310 -92221588 - L2 LINE L2 -7 3306 2984 188 169 0 51 chr13 27524555 27524614 -92220284 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 185 194 28 0 chr13 27524745 27524781 -92220117 + L3b LINE CR1 1522 1558 -25 6858 111 25 16 chr13 27525904 27526966 -92217932 - MER11C LTR ERVK 0 1071 1 1700 148 27 6 chr13 27526969 27527299 -92217599 + MER96B DNA MER1_type? 1 337 -80 1358 273 5 11 chr13 27527317 27527560 -92217338 + L1MB7 LINE L1 22 264 -6278 2054 136 0 20 chr13 27527560 27527862 -92217036 + AluSx SINE Alu 1 296 -16 1358 273 5 11 chr13 27527862 27527999 -92216899 + L1MB7 LINE L1 264 400 -6142 3154 244 80 50 chr13 27528011 27529662 -92215236 + L1MB7 LINE L1 451 2096 -4550 7885 227 46 45 chr13 27529668 27530288 -92214610 + L1MB7 LINE L1 2451 3069 -3613 2104 128 0 22 chr13 27530288 27530601 -92214297 - AluSx SINE Alu -5 307 2 7885 227 46 45 chr13 27530601 27534224 -92210674 + L1MB7 LINE L1 3069 6682 0 953 184 165 4 chr13 27534591 27534863 -92210035 - MER33 DNA MER1_type -5 319 4 345 216 56 56 chr13 27535467 27535592 -92209306 + MIR SINE MIR 84 208 -54 206 255 191 32 chr13 27535694 27535788 -92209110 + MER5A DNA MER1_type 39 147 -42 301 176 0 15 chr13 27537562 27537630 -92207268 - MER116 DNA Mariner -13 67 1 465 200 33 0 chr13 27538929 27539019 -92205879 - MER91B DNA MER1_type -1 189 97 261 157 20 0 chr13 27539041 27539092 -92205806 - MER91B DNA MER1_type -60 130 79 207 289 13 0 chr13 27539901 27539977 -92204921 + (TGG)n Simple_repeat Simple_repeat 2 78 0 2380 84 0 3 chr13 27540213 27540521 -92204377 - AluSc SINE Alu -2 307 1 228 135 0 0 chr13 27542938 27542975 -92201923 + (TG)n Simple_repeat Simple_repeat 2 38 0 225 111 0 44 chr13 27543124 27543169 -92201729 + (TG)n Simple_repeat Simple_repeat 2 44 0 1676 147 7 18 chr13 27543191 27543476 -92201422 - AluSx SINE Alu -30 282 1 25 0 0 0 chr13 27543485 27543510 -92201388 + AT_rich Low_complexity Low_complexity 1 25 0 1419 206 45 24 chr13 27543522 27543809 -92201089 - AluJo SINE Alu -19 293 1 486 291 8 31 chr13 27543849 27543976 -92200922 + L2 LINE L2 3189 3312 -1 385 235 197 33 chr13 27544313 27544496 -92200402 + MIR SINE MIR 29 241 -21 198 0 0 0 chr13 27544615 27544637 -92200261 + (TA)n Simple_repeat Simple_repeat 2 23 0 226 314 105 24 chr13 27545450 27545574 -92199324 + L2 LINE L2 3178 3311 -2 255 295 95 53 chr13 27546678 27546773 -92198125 - L2 LINE L2 -17 3296 3198 924 186 26 26 chr13 27547345 27547538 -92197360 + MER20 DNA MER1_type 25 217 -2 270 277 0 59 chr13 27547628 27547729 -92197169 + L2 LINE L2 3219 3313 0 313 303 104 19 chr13 27548240 27548451 -92196447 + L2 LINE L2 2828 3056 -216 299 390 41 0 chr13 27550026 27550149 -92194749 - L2 LINE L2 -8 3264 3137 271 259 30 82 chr13 27550198 27550333 -92194565 - MER69A DNA AcHobo -22 155 28 794 233 270 9 chr13 27550448 27550974 -92193924 + L2 LINE L2 2641 3301 -12 1780 142 67 0 chr13 27551152 27551419 -92193479 + AluSx SINE Alu 1 285 -27 553 109 9 9 chr13 27551470 27551580 -92193318 + (CATA)n Simple_repeat Simple_repeat 2 111 0 889 285 125 25 chr13 27552024 27552537 -92192361 + Charlie7 DNA MER1_type 120 683 -1929 436 284 209 0 chr13 27552638 27552786 -92192112 + MER5A DNA MER1_type 10 188 -1 333 349 54 7 chr13 27552859 27553008 -92191890 + MIR SINE MIR 30 185 -77 448 240 82 20 chr13 27553128 27553324 -92191574 - Charlie2 DNA MER1_type 0 2862 2655 539 260 136 18 chr13 27553354 27553685 -92191213 + LTR33A LTR ERVL 152 521 -2 5690 65 5 13 chr13 27553807 27554574 -92190324 - L1PA10 LINE L1 -1 6167 5407 548 244 161 0 chr13 27554579 27554759 -92190139 - Charlie2 DNA MER1_type -2496 286 78 205 388 9 26 chr13 27556410 27556526 -92188372 - L2 LINE L2 -1 3271 3158 210 301 82 0 chr13 27557670 27557743 -92187155 - MIR SINE MIR -79 183 105 206 273 100 109 chr13 27559898 27560118 -92184780 + MIR SINE MIR 29 246 -16 237 315 0 0 chr13 27560193 27560266 -92184632 + L2 LINE L2 3230 3302 -11 1967 122 3 14 chr13 27560879 27561166 -92183732 + AluSx SINE Alu 1 284 -28 180 0 0 0 chr13 27561166 27561186 -92183712 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 286 286 160 0 chr13 27561189 27561395 -92183503 + L1ME4a LINE L1 5684 5922 -199 42 20 0 0 chr13 27562209 27562258 -92182640 + AT_rich Low_complexity Low_complexity 1 49 0 1709 203 7 0 chr13 27562259 27562545 -92182353 - AluJo SINE Alu -24 288 1 291 179 0 0 chr13 27563601 27563668 -92181230 + (TG)n Simple_repeat Simple_repeat 2 68 0 286 292 15 54 chr13 27563730 27563860 -92181038 - MER5A DNA MER1_type -64 125 1 27 0 0 0 chr13 27565402 27565429 -92179469 + AT_rich Low_complexity Low_complexity 1 27 0 21 82 0 0 chr13 27565873 27565922 -92178976 + AT_rich Low_complexity Low_complexity 1 49 0 2177 124 3 3 chr13 27568042 27568348 -92176550 + AluSc SINE Alu 1 306 -3 1013 126 20 40 chr13 27568534 27568733 -92176165 - L1MA5A LINE L1 -5 6292 6098 185 310 69 0 chr13 27569528 27569586 -92175312 - L2 LINE L2 -36 3236 3175 35 0 0 0 chr13 27569715 27569750 -92175148 + AT_rich Low_complexity Low_complexity 1 35 0 1372 289 121 24 chr13 27570078 27570985 -92173913 - L2 LINE L2 0 3313 2320 250 202 222 40 chr13 27571240 27571339 -92173559 - MLT1K LTR MaLR -344 244 128 316 293 0 0 chr13 27571434 27571509 -92173389 + L2 LINE L2 3235 3309 -4 2161 79 9 88 chr13 27571624 27571952 -92172946 + AluY SINE Alu 1 302 -9 27 0 0 0 chr13 27571995 27572022 -92172876 + AT_rich Low_complexity Low_complexity 1 27 0 334 367 0 0 chr13 27572846 27573015 -92171883 + C-rich Low_complexity Low_complexity 1 169 0 8105 156 31 13 chr13 27573115 27574594 -92170304 - L1P LINE L1 -2519 3627 2122 4052 131 4 5 chr13 27574595 27575435 -92169463 - L1MA3 LINE L1 -474 5831 4992 749 173 12 87 chr13 27576154 27576327 -92168571 + MLT1B LTR MaLR 1 160 -214 223 239 0 0 chr13 27576328 27576374 -92168524 + G-rich Low_complexity Low_complexity 3 48 0 835 191 16 57 chr13 27576455 27576649 -92168249 + MLT1B LTR MaLR 205 390 0 1984 95 4 4 chr13 27577425 27577688 -92167210 - AluSc SINE Alu -46 263 1 10326 130 1 30 chr13 27577689 27579090 -92165808 - L1P4 LINE L1 -491 5683 4363 350 44 0 0 chr13 27579090 27579135 -92165763 - L1PA3 LINE L1 -3 6152 6108 10326 130 1 30 chr13 27579135 27579777 -92165121 - L1P4 LINE L1 -1811 4363 3704 1576 146 59 31 chr13 27579877 27580164 -92164734 - MSTB1 LTR MaLR -136 296 2 376 166 74 23 chr13 27580169 27580277 -92164621 + L1MEd LINE L1 1287 1486 -4886 673 287 11 0 chr13 27580312 27580493 -92164405 + L1MEd LINE L1 1679 1861 -4702 336 299 46 69 chr13 27580550 27580724 -92164174 + L2 LINE L2 2897 3066 -247 2113 83 58 0 chr13 27581351 27581628 -92163270 - AluSg1 SINE Alu -16 293 1 1522 254 129 17 chr13 27581672 27582152 -92162746 - MLT1F LTR MaLR -8 534 1 334 209 0 45 chr13 27582376 27582443 -92162455 + L2 LINE L2 3209 3272 0 336 197 0 45 chr13 27582502 27582568 -92162330 + L2 LINE L2 3210 3272 0 342 194 48 0 chr13 27582629 27582691 -92162207 + L2 LINE L2 3208 3272 0 187 253 60 60 chr13 27584392 27584475 -92160423 + L3 LINE CR1 1494 1576 -1 964 251 27 5 chr13 27585109 27585332 -92159566 + MIR SINE MIR 28 255 -7 494 239 122 20 chr13 27585565 27585762 -92159136 - L3 LINE CR1 -149 1428 1212 2075 101 66 0 chr13 27586330 27586618 -92158280 + AluSg SINE Alu 1 307 -3 298 354 24 0 chr13 27587030 27587157 -92157741 - L2 LINE L2 -223 3049 2920 6055 99 31 0 chr13 27588373 27589307 -92155591 - L1PA10 LINE L1 -32 6136 5179 261 224 164 45 chr13 27590597 27590731 -92154167 - L1ME4a LINE L1 -17 6104 5955 4669 133 35 19 chr13 27591002 27591802 -92153096 - L1PB4 LINE L1 0 6156 5344 4410 177 67 49 chr13 27591798 27592082 -92152816 + L1MD2 LINE L1 4674 4951 -1408 * 1889 135 43 0 chr13 27592082 27592363 -92152535 - AluSx SINE Alu -19 293 1 4410 177 67 49 chr13 27592363 27592475 -92152423 + L1MD2 LINE L1 4951 5059 -1300 1679 187 3 3 chr13 27592475 27592759 -92152139 + AluJo SINE Alu 6 289 -23 4410 177 67 49 chr13 27592759 27593789 -92151109 + L1MD2 LINE L1 5059 6130 -229 4242 171 39 54 chr13 27593781 27594835 -92150063 + L1MB3 LINE L1 5379 6180 -3 * 304 348 22 0 chr13 27595463 27595552 -92149346 - MIR SINE MIR -123 139 49 1996 243 100 18 chr13 27595759 27596641 -92148257 - L2 LINE L2 -8 3305 2327 2472 73 0 7 chr13 27598434 27598737 -92146161 - AluSp SINE Alu -12 301 1 805 266 15 0 chr13 27599966 27600169 -92144729 - MER3 DNA MER1_type 0 209 4 9473 36 12 5 chr13 27600448 27602292 -92142606 + L1PA4 LINE L1 4305 6155 0 582 267 0 7 chr13 27602349 27602484 -92142414 - MER45A DNA AcHobo 0 178 45 5905 215 67 61 chr13 27603322 27603442 -92141456 - L1MD2 LINE L1 -9 6744 6626 2182 158 38 28 chr13 27603442 27603641 -92141257 + MER57A LTR ERV1 1 197 -206 2407 77 0 3 chr13 27603641 27603941 -92140957 - AluY SINE Alu -11 300 2 2182 158 38 28 chr13 27603941 27604101 -92140797 + MER57A LTR ERV1 197 367 -36 2021 147 0 25 chr13 27604101 27604420 -92140478 - AluSx SINE Alu -1 311 1 2182 158 38 28 chr13 27604420 27604458 -92140440 + MER57A LTR ERV1 367 403 0 5905 215 67 61 chr13 27604458 27604529 -92140369 - L1MD2 LINE L1 -127 6626 6557 222 37 0 0 chr13 27604529 27604556 -92140342 + (TG)n Simple_repeat Simple_repeat 2 28 0 5905 215 67 61 chr13 27604556 27604967 -92139931 - L1MD2 LINE L1 -196 6557 6150 348 143 79 0 chr13 27604967 27605030 -92139868 - MLT1C LTR MaLR 0 467 400 239 170 0 57 chr13 27605027 27605080 -92139818 - MLT1B LTR MaLR -340 50 1 * 5905 215 67 61 chr13 27605080 27607318 -92137580 - L1MD2 LINE L1 -653 6100 3779 807 176 6 6 chr13 27607320 27607485 -92137413 - L1MD2 LINE L1 -4517 2023 1859 24113 33 4 0 chr13 27607493 27611023 -92133875 - L1PA4 LINE L1 0 6155 2616 8867 41 0 0 chr13 27611023 27612094 -92132804 + L1PA4 LINE L1 1526 2596 -3550 1388 161 80 0 chr13 27612087 27612373 -92132525 - L1MD2 LINE L1 -4662 1878 1570 * 5349 42 0 0 chr13 27612375 27612978 -92131920 - L1PA4 LINE L1 -2 6153 5551 6375 28 1 0 chr13 27612978 27613724 -92131174 - L1PA4 LINE L1 -1048 5098 4352 3065 75 10 0 chr13 27613713 27614113 -92130785 + L1PA4 LINE L1 3941 4344 -1802 * 230 237 0 0 chr13 27614115 27614127 -92130771 + T-rich Low_complexity Low_complexity 1 12 -47 2906 126 32 2 chr13 27614127 27614570 -92130328 - L1MA2 LINE L1 0 6304 5849 230 237 0 0 chr13 27614570 27614616 -92130282 + T-rich Low_complexity Low_complexity 11 59 0 2222 99 42 19 chr13 27614623 27614936 -92129962 - L1PA10 LINE L1 -16 6152 5833 369 0 0 0 chr13 27615050 27615091 -92129807 + (CA)n Simple_repeat Simple_repeat 2 42 0 2235 158 45 5 chr13 27615126 27615505 -92129393 - MLT2C2 LTR ERVL -70 394 1 257 289 50 25 chr13 27615611 27615732 -92129166 - MIR SINE MIR -74 188 65 2093 114 3 0 chr13 27616443 27616732 -92128166 - AluSp SINE Alu -5 308 19 1421 218 108 90 chr13 27616736 27617426 -92127472 - L1ME3 LINE L1 -1 6161 5456 1727 160 28 7 chr13 27617687 27617974 -92126924 - AluJo SINE Alu -19 293 1 258 250 0 0 chr13 27619031 27619083 -92125815 + LTR30 LTR ERV1 1 52 -670 1281 111 0 137 chr13 27619083 27619353 -92125545 + LTR12 LTR ERV1 53 285 -429 327 191 0 0 chr13 27619353 27619416 -92125482 + LTR30 LTR ERV1 552 614 -108 616 175 100 0 chr13 27619416 27619536 -92125362 + LTR12 LTR ERV1 349 480 -234 2312 89 7 0 chr13 27620030 27620321 -92124577 + AluSc SINE Alu 1 293 -16 22 0 0 0 chr13 27620492 27620514 -92124384 + AT_rich Low_complexity Low_complexity 1 22 0 2587 101 6 8 chr13 27621693 27622058 -92122840 - THE1B LTR MaLR 0 364 1 1591 189 29 3 chr13 27622087 27622430 -92122468 + L1MB5 LINE L1 5685 6036 -138 604 297 54 83 chr13 27622434 27622842 -92122056 + L1ME3A LINE L1 792 1187 -4932 391 262 0 0 chr13 27622842 27622949 -92121949 + L1ME3A LINE L1 2271 2377 -3752 226 271 0 31 chr13 27622975 27623071 -92121827 + L1ME3A LINE L1 2475 2567 -3562 548 157 37 0 chr13 27623071 27623179 -92121719 - Charlie1 DNA MER1_type 0 2761 2650 22 80 0 0 chr13 27623372 27623422 -92121476 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr13 27623443 27623471 -92121427 + AT_rich Low_complexity Low_complexity 1 28 0 1773 167 88 24 chr13 27623471 27623927 -92120971 - Charlie1 DNA MER1_type -265 2496 2012 2114 238 100 27 chr13 27623928 27624889 -92120009 + L1ME3A LINE L1 5122 6149 -4 444 316 48 39 chr13 27624962 27625193 -92119705 + MIR SINE MIR 8 240 -22 325 276 11 11 chr13 27625199 27625286 -92119612 - L2 LINE L2 -2 3270 3184 597 235 128 11 chr13 27625305 27625492 -92119406 - MER3 DNA MER1_type 0 209 1 955 195 42 0 chr13 27626020 27626256 -92118642 - L1MA4 LINE L1 -2 6298 6053 22 35 0 0 chr13 27626300 27626329 -92118569 + AT_rich Low_complexity Low_complexity 1 29 0 256 263 51 17 chr13 27626741 27626774 -92118124 - L1MA4A LINE L1 0 6303 6271 5079 123 27 25 chr13 27626774 27627833 -92117065 - L1PB4 LINE L1 -19 6137 5068 306 50 0 0 chr13 27628195 27628235 -92116663 + (TG)n Simple_repeat Simple_repeat 1 40 0 744 174 8 0 chr13 27628646 27628778 -92116120 - FLAM_C SINE Alu 0 133 1 240 333 48 0 chr13 27628873 27628978 -92115920 - MIR SINE MIR -50 212 103 546 380 5 9 chr13 27630288 27630509 -92114389 + L3 LINE CR1 1333 1552 -25 4617 165 44 11 chr13 27631386 27632501 -92112397 - L1MB2 LINE L1 -3 6168 5009 2392 148 12 7 chr13 27632501 27632907 -92111991 - Tigger1 DNA MER2_type -2010 408 1 938 188 110 0 chr13 27632907 27633179 -92111719 + L1 LINE L1 4163 4464 -1682 816 136 14 0 chr13 27633176 27633323 -92111575 - L1MB2 LINE L1 -1541 4605 4457 * 357 223 11 0 chr13 27633317 27633411 -92111487 - L1MB2 LINE L1 -2094 4052 3958 * 2037 154 0 0 chr13 27633446 27633744 -92111154 + AluSx SINE Alu 1 298 -14 338 328 25 37 chr13 27634155 27634396 -92110502 - L1MC4a LINE L1 -1759 6049 5812 379 285 163 19 chr13 27634618 27635029 -92109869 - L1MC4a LINE L1 -1896 5912 5443 329 280 99 71 chr13 27635030 27635156 -92109742 - L1MC4a LINE L1 -743 5403 5282 2123 118 0 0 chr13 27635156 27635443 -92109455 + AluSq SINE Alu 1 287 -26 329 280 99 71 chr13 27635443 27635699 -92109199 - L1MC4a LINE L1 -864 5282 5008 239 293 0 0 chr13 27635736 27635818 -92109080 - L1MC4a LINE L1 -1159 4987 4906 286 204 151 11 chr13 27635865 27635958 -92108940 + L1MB7 LINE L1 4729 4834 -1312 223 287 225 29 chr13 27636877 27637086 -92107812 - MIR SINE MIR -12 250 1 1850 132 3 13 chr13 27637838 27638142 -92106756 - L1PB1 LINE L1 0 6151 5851 1898 179 9 9 chr13 27639321 27639662 -92105236 - MER2 DNA MER2_type -3 341 1 33 43 0 0 chr13 27640817 27640864 -92104034 + AT_rich Low_complexity Low_complexity 1 47 0 1678 201 76 44 chr13 27640925 27641380 -92103518 + L1MDa LINE L1 143 582 -5958 2112 170 59 7 chr13 27641380 27641785 -92103113 - MSTB LTR MaLR 0 426 1 1678 201 76 44 chr13 27641785 27642054 -92102844 + L1MDa LINE L1 582 1210 -5330 * 3931 155 60 8 chr13 27642035 27642803 -92102095 + L1MB7 LINE L1 5361 6168 -16 2078 167 78 37 chr13 27642810 27643399 -92101499 + L1MDa LINE L1 1220 1835 -4705 758 287 127 2 chr13 27643549 27643943 -92100955 - L1ME4a LINE L1 -76 6045 5603 221 214 29 0 chr13 27643956 27644026 -92100872 + (TA)n Simple_repeat Simple_repeat 1 72 0 26 0 0 0 chr13 27644701 27644727 -92100171 + GC_rich Low_complexity Low_complexity 1 26 0 1033 176 44 24 chr13 27644943 27645193 -92099705 + L1MDa LINE L1 1573 1827 -4713 653 287 128 13 chr13 27645352 27645749 -92099149 - L1ME4a LINE L1 -76 6045 5603 223 237 25 17 chr13 27645762 27645880 -92099018 + (TA)n Simple_repeat Simple_repeat 2 120 0 194 247 0 27 chr13 27646663 27646736 -92098162 + L2 LINE L2 1615 1685 -1629 2509 77 0 0 chr13 27646807 27647118 -92097780 + AluY SINE Alu 1 311 0 261 278 0 14 chr13 27647248 27647320 -92097578 + (TG)n Simple_repeat Simple_repeat 1 71 0 1263 294 151 17 chr13 27647326 27648023 -92096875 + L2 LINE L2 1688 2477 -837 203 232 14 43 chr13 27648233 27648302 -92096596 + L2 LINE L2 3224 3290 -23 199 303 34 67 chr13 27648984 27649103 -92095795 - MIR SINE MIR -117 145 31 245 210 16 0 chr13 27649309 27649371 -92095527 + (TA)n Simple_repeat Simple_repeat 2 64 0 2077 152 11 6 chr13 27649375 27649737 -92095161 - MLT2D LTR ERVL -50 364 1 1810 166 3 13 chr13 27650177 27650490 -92094408 + AluJo SINE Alu 1 310 -2 243 225 28 14 chr13 27651748 27651819 -92093079 - L1ME4a LINE L1 -79 6042 5971 770 210 68 18 chr13 27651989 27652208 -92092690 - Zaphod DNA AcHobo -19 4012 3783 1549 211 87 6 chr13 27652240 27652781 -92092117 - Zaphod DNA AcHobo -2699 1332 748 1249 211 0 0 chr13 27652786 27653004 -92091894 - AluJo SINE Alu -19 293 76 1048 141 11 16 chr13 27653005 27653196 -92091702 - L1MA5A LINE L1 -3 6294 6105 18055 189 47 22 chr13 27653314 27659058 -92085840 - L1 LINE L1 -1413 6152 570 2131 116 142 16 chr13 27659058 27659438 -92085460 + MSTA LTR MaLR 1 428 0 18055 189 47 22 chr13 27659438 27660003 -92084895 - L1 LINE L1 -6995 570 21 2345 233 89 10 chr13 27660003 27660883 -92084015 - L1MDb LINE L1 -4954 1452 458 1326 273 123 21 chr13 27660876 27661436 -92083462 - L1MDb LINE L1 -5776 633 17 * 675 299 43 4 chr13 27662703 27662934 -92081964 + MIR SINE MIR 15 254 -8 27 29 0 0 chr13 27663868 27663902 -92080996 + AT_rich Low_complexity Low_complexity 1 34 0 1332 178 12 17 chr13 27664423 27664664 -92080234 + AluJo SINE Alu 49 288 -24 4085 168 33 48 chr13 27664775 27666552 -92078346 + L1MA3 LINE L1 4558 6298 -7 211 324 89 49 chr13 27666568 27666793 -92078105 - L2 LINE L2 -210 3062 2829 253 336 85 47 chr13 27666799 27667117 -92077781 - L2 LINE L2 -1 3271 2942 197 296 136 12 chr13 27668056 27668137 -92076761 + MIR SINE MIR 16 106 -102 391 188 0 0 chr13 27668270 27668339 -92076559 - MER2 DNA MER2_type -10 335 267 1612 170 88 25 chr13 27668390 27668743 -92076155 + THE1C LTR MaLR 1 375 0 2037 29 4 0 chr13 27668776 27669021 -92075877 - L1PA4 LINE L1 -6 6149 5904 371 176 0 0 chr13 27669022 27669096 -92075802 + MER2 DNA MER2_type 108 181 -164 192 270 40 40 chr13 27669315 27669389 -92075509 + MIR SINE MIR 79 152 -110 1035 144 12 0 chr13 27669401 27669568 -92075330 - MER2 DNA MER2_type -175 170 2 230 189 156 22 chr13 27669758 27669848 -92075050 + MLT1H LTR MaLR 432 533 -16 198 259 148 28 chr13 27669870 27669978 -92074920 + MIR SINE MIR 113 233 -29 2068 182 49 9 chr13 27670179 27670210 -92074688 - MLT2C2 LTR ERVL 0 464 436 405 0 0 0 chr13 27670210 27670255 -92074643 + (CA)n Simple_repeat Simple_repeat 2 46 0 2068 182 49 9 chr13 27670255 27670669 -92074229 - MLT2C2 LTR ERVL -28 436 1 263 289 50 25 chr13 27670775 27670896 -92074002 - MIR SINE MIR -74 188 65 2303 104 3 0 chr13 27671607 27671914 -92072984 - AluSq SINE Alu -5 308 1 416 101 0 0 chr13 27671915 27671978 -92072920 - L1MA5A LINE L1 -171 6126 6064 * 544 184 184 28 chr13 27671976 27672193 -92072705 - Zaphod DNA AcHobo -3275 756 506 968 244 44 0 chr13 27672194 27672399 -92072499 + MER58A DNA MER1_type 2 215 -9 604 250 8 0 chr13 27672408 27672540 -92072358 - Zaphod DNA AcHobo -3518 513 381 526 302 93 24 chr13 27672572 27672820 -92072078 - Zaphod DNA AcHobo -3716 315 51 192 209 47 0 chr13 27673355 27673398 -92071500 + L3 LINE CR1 1375 1419 -158 256 400 24 0 chr13 27673593 27673718 -92071180 - MIR SINE MIR -128 134 7 418 218 73 32 chr13 27675162 27675286 -92069612 - MER112 DNA MER1_type -126 134 6 264 317 17 33 chr13 27675290 27675410 -92069488 - L1ME LINE L1 -513 5657 5540 227 252 65 9 chr13 27675830 27675937 -92068961 - Charlie8 DNA MER1_type -1926 491 379 486 249 42 114 chr13 27676013 27676250 -92068648 - Charlie8 DNA MER1_type -2196 221 2 260 324 0 0 chr13 27676413 27676481 -92068417 + L2 LINE L2 3205 3272 0 518 258 18 30 chr13 27677449 27677616 -92067282 - MIR SINE MIR -4 258 94 182 330 143 44 chr13 27677693 27677875 -92067023 - L2 LINE L2 -68 3204 3005 1208 173 0 0 chr13 27677876 27678067 -92066831 + AluJb SINE Alu 121 311 -1 282 301 7 44 chr13 27678093 27678229 -92066669 - L2 LINE L2 -300 2972 2842 21 0 0 0 chr13 27679557 27679578 -92065320 + AT_rich Low_complexity Low_complexity 1 21 0 332 249 164 73 chr13 27682100 27682429 -92062469 - L1MC4a LINE L1 -1636 6172 5814 406 223 230 14 chr13 27682439 27682578 -92062320 - L1MC4a LINE L1 -2057 5751 5583 608 211 8 8 chr13 27682684 27682807 -92062091 + MER94 DNA DNA 2 124 -10 636 125 19 10 chr13 27682936 27683040 -92061858 + L1MB3 LINE L1 6075 6179 -4 1397 238 11 26 chr13 27683061 27683410 -92061488 + L1ME1 LINE L1 5823 6166 0 4491 146 21 34 chr13 27684073 27684889 -92060009 + L1MB3 LINE L1 5370 6174 -9 1413 208 48 10 chr13 27685154 27685474 -92059424 + MER33 DNA MER1_type 1 323 -1 698 146 177 0 chr13 27685481 27685611 -92059287 + MER5A DNA MER1_type 34 186 -3 884 226 123 39 chr13 27686504 27686814 -92058084 - MER46C DNA MER2_type -1 337 2 218 265 29 59 chr13 27687174 27687276 -92057622 + MIR SINE MIR 164 262 0 21 0 0 0 chr13 27687395 27687416 -92057482 + AT_rich Low_complexity Low_complexity 1 21 0 2000 174 34 8 chr13 27687477 27687834 -92057064 + MLT2D LTR ERVL 1 366 -48 907 223 41 0 chr13 27688600 27688797 -92056101 - MER3 DNA MER1_type 0 209 5 329 296 79 17 chr13 27688859 27688997 -92055901 - MIR SINE MIR -62 146 8 208 294 49 10 chr13 27689188 27689290 -92055608 - L2 LINE L2 -1397 1917 1812 328 236 176 0 chr13 27689428 27689576 -92055322 - Charlie8 DNA MER1_type -2152 265 92 501 124 82 10 chr13 27689619 27689716 -92055182 + L1MB3 LINE L1 6080 6183 0 470 273 8 0 chr13 27689816 27689937 -92054961 + MER5B DNA MER1_type 51 172 -6 282 279 76 0 chr13 27691724 27691803 -92053095 - Charlie8 DNA MER1_type -2314 103 19 217 149 68 108 chr13 27691936 27692010 -92052888 - L2 LINE L2 -2 3311 3241 2418 86 186 121 chr13 27692191 27692868 -92052030 + LTR12 LTR ERV1 1 2313 -125 706 275 138 73 chr13 27693250 27693756 -92051142 - MLT1E2 LTR MaLR -8 618 80 514 171 34 17 chr13 27694140 27694257 -92050641 + MER4C LTR ERV1 1 119 -346 656 256 73 136 chr13 27694276 27694908 -92049990 + LTR34 LTR ERV1 104 695 -4 192 316 20 31 chr13 27694989 27695087 -92049811 + L2 LINE L2 2995 3091 -181 312 303 0 0 chr13 27696035 27696134 -92048764 - MLT1E2 LTR MaLR -8 618 520 * 609 240 2 40 chr13 27696119 27696342 -92048556 + AluJ SINE Alu 81 260 -52 923 229 19 64 chr13 27696441 27696623 -92048275 - MLT1E2 LTR MaLR -371 255 87 1804 163 14 88 chr13 27696623 27697041 -92047857 - MLT1B LTR MaLR -1 389 3 923 229 19 64 chr13 27697041 27697125 -92047773 - MLT1E2 LTR MaLR -539 87 1 1738 171 31 3 chr13 27697334 27697626 -92047272 - AluSx SINE Alu -12 300 1 497 203 82 88 chr13 27697768 27697950 -92046948 - MER3 DNA MER1_type -5 204 24 2049 126 6 25 chr13 27698898 27699215 -92045683 - AluSx SINE Alu -1 311 1 2274 141 21 26 chr13 27700752 27701129 -92043769 + THE1C LTR MaLR 1 375 0 1768 102 0 0 chr13 27701129 27701373 -92043525 + THE1C-int LTR MaLR 1 244 -1336 544 199 0 89 chr13 27702232 27702378 -92042520 - FLAM_A SINE Alu 0 133 1 28 29 0 0 chr13 27702613 27702648 -92042250 + AT_rich Low_complexity Low_complexity 1 35 0 2529 51 0 0 chr13 27703825 27704117 -92040781 + AluY SINE Alu 1 292 -19 420 299 0 28 chr13 27705085 27705229 -92039669 - MER20 DNA MER1_type -64 155 16 1832 163 56 31 chr13 27705488 27705843 -92039055 + THE1B LTR MaLR 1 364 0 1761 177 7 0 chr13 27706135 27706440 -92038458 + AluSx SINE Alu 1 307 -5 2067 125 6 6 chr13 27706489 27706800 -92038098 + AluY SINE Alu 1 311 0 35 0 0 0 chr13 27707147 27707182 -92037716 + AT_rich Low_complexity Low_complexity 1 35 0 386 96 32 48 chr13 27707183 27707308 -92037590 + (TTATA)n Simple_repeat Simple_repeat 2 124 0 261 169 42 0 chr13 27707310 27707381 -92037517 + (TA)n Simple_repeat Simple_repeat 2 75 0 302 341 11 0 chr13 27707481 27707569 -92037329 + L1MC4 LINE L1 6615 6703 -1339 * 324 250 33 0 chr13 27707511 27707603 -92037295 - L1MC4 LINE L1 -1337 6705 6611 1249 200 86 21 chr13 27708255 27708535 -92036363 - AluJo SINE Alu -14 298 1 526 201 7 43 chr13 27708571 27708692 -92036206 - Charlie5 DNA MER1_type -8 2616 2499 2299 192 28 16 chr13 27708692 27709119 -92035779 + Tigger2a DNA MER2_type 2 433 -1 526 201 7 43 chr13 27709119 27709136 -92035762 - Charlie5 DNA MER1_type -125 2499 2483 510 275 192 0 chr13 27709526 27709719 -92035179 - Charlie8 DNA MER1_type -2142 275 46 198 380 65 65 chr13 27710006 27710361 -92034537 + L2 LINE L2 2879 3233 -39 198 71 0 0 chr13 27710551 27710579 -92034319 + (TG)n Simple_repeat Simple_repeat 2 29 0 1019 277 4 11 chr13 27711113 27711373 -92033525 - MIR SINE MIR -2 260 3 229 298 279 0 chr13 27711691 27711795 -92033103 - MIR SINE MIR -41 221 89 735 322 83 51 chr13 27712088 27713093 -92031805 + L2 LINE L2 2233 3272 0 739 188 32 32 chr13 27713160 27713314 -92031584 + MER5A DNA MER1_type 1 154 -35 480 369 5 5 chr13 27713393 27713580 -92031318 + MIR3 SINE MIR 20 206 -2 2411 135 136 131 chr13 27713890 27714499 -92030399 + LTR18B LTR ERVL 3 614 0 969 228 0 0 chr13 27714588 27714768 -92030130 - HERVL18 LTR ERVL -4803 1244 1065 2100 228 32 0 chr13 27714782 27715190 -92029708 + HERVL18 LTR ERVL 68 488 -5559 390 169 14 0 chr13 27715459 27715530 -92029368 + MADE1 DNA Mariner 9 80 0 5001 116 9 8 chr13 27717924 27718693 -92026205 - L1PA16 LINE L1 -9 6157 5388 1901 76 61 11 chr13 27718693 27718955 -92025943 - L1PA11 LINE L1 0 6174 5900 2560 68 0 0 chr13 27718955 27719262 -92025636 - AluY SINE Alu -2 309 3 21 0 0 0 chr13 27719278 27719299 -92025599 + AT_rich Low_complexity Low_complexity 1 21 0 3709 152 47 29 chr13 27720320 27721006 -92023892 - L1MB3 LINE L1 0 6183 5486 1366 206 204 0 chr13 27721010 27721393 -92023505 - L1PA16 LINE L1 -924 5222 4762 275 138 12 62 chr13 27721383 27721463 -92023435 - L1M4c LINE L1 -4093 2291 2216 * 8670 161 17 28 chr13 27721571 27723592 -92021306 + L1P3 LINE L1 347 2358 -4103 895 284 74 53 chr13 27723704 27724209 -92020689 + L2 LINE L2 2750 3274 -39 646 290 21 16 chr13 27725866 27726052 -92018846 + MIR SINE MIR 10 196 -66 956 292 100 29 chr13 27726286 27726806 -92018092 - L1MC4a LINE L1 -1945 5863 5307 371 306 139 24 chr13 27726809 27727182 -92017716 - L1MC4a LINE L1 -846 5300 4885 707 158 113 15 chr13 27727204 27727337 -92017561 + FAM SINE Alu 20 165 -20 23 68 0 0 chr13 27727338 27727382 -92017516 + AT_rich Low_complexity Low_complexity 1 44 0 311 173 12 0 chr13 27727401 27727482 -92017416 + (TA)n Simple_repeat Simple_repeat 2 83 0 469 345 50 3 chr13 27727482 27727824 -92017074 - L1MC4a LINE L1 -1301 4845 4488 324 0 0 0 chr13 27728044 27728080 -92016818 + (TG)n Simple_repeat Simple_repeat 1 36 0 313 335 76 38 chr13 27728091 27728381 -92016517 - L1MC4a LINE L1 -2476 3670 3370 1595 214 0 4 chr13 27728387 27728668 -92016230 + AluJo SINE Alu 1 280 -32 1288 244 101 7 chr13 27728755 27729169 -92015729 + MLT1D LTR MaLR 51 503 -2 514 217 45 19 chr13 27729248 27729405 -92015493 - HAL1b LINE L1 -849 499 339 2555 135 31 26 chr13 27730150 27730683 -92014215 + HUERS-P1 LTR ERV1 3541 4277 -1986 * 5638 131 55 19 chr13 27730674 27732251 -92012647 + HUERS-P1 LTR ERV1 5307 7168 -648 26 0 0 0 chr13 27732418 27732444 -92012454 + AT_rich Low_complexity Low_complexity 1 26 0 260 313 120 88 chr13 27732675 27732721 -92012177 - L2 LINE L2 0 3272 3229 1580 191 94 31 chr13 27732721 27733072 -92011826 + MER93b LTR ERV1 1 373 0 260 313 120 88 chr13 27733072 27733217 -92011681 - L2 LINE L2 -43 3229 3075 551 89 13 0 chr13 27733737 27733816 -92011082 + MADE1 DNA Mariner 1 80 0 231 243 57 121 chr13 27733967 27734107 -92010791 - MIR SINE MIR -66 196 66 242 263 158 21 chr13 27734354 27734449 -92010449 + MIR SINE MIR 86 193 -69 220 294 22 66 chr13 27735031 27735167 -92009731 + MIR SINE MIR 91 220 -42 2333 112 0 0 chr13 27735261 27735566 -92009332 + AluSx SINE Alu 1 305 -7 2090 132 0 14 chr13 27737299 27737595 -92007303 + AluSx SINE Alu 1 292 -20 453 281 60 10 chr13 27737755 27737954 -92006944 - MLT1J2 LTR MaLR -205 245 37 3090 105 28 0 chr13 27737954 27738457 -92006441 + L1P LINE L1 4816 5332 -814 271 284 107 52 chr13 27738623 27738933 -92005965 - MER50 LTR ERV1 -398 336 10 457 213 53 73 chr13 27738941 27739091 -92005807 + MER89 LTR ERV1 413 559 0 2534 54 0 0 chr13 27739284 27739582 -92005316 - AluSg SINE Alu -12 298 1 5739 118 15 3 chr13 27739584 27741114 -92003784 - L1PA11 LINE L1 -267 5907 4360 3443 211 29 17 chr13 27741113 27742001 -92002897 - L1P LINE L1 -749 5397 4499 * 23964 140 15 23 chr13 27742101 27748440 -91996458 + L1PA8 LINE L1 139 6484 -3 1903 198 39 39 chr13 27749150 27749641 -91995257 - L1MD2 LINE L1 -41 7129 6639 1250 169 15 41 chr13 27749641 27749709 -91995189 - Tigger2a DNA MER2_type -2274 444 376 2444 84 0 0 chr13 27749709 27750007 -91994891 - AluY SINE Alu -13 298 1 1250 169 15 41 chr13 27750007 27750204 -91994694 - Tigger2a DNA MER2_type -2342 376 186 513 165 10 10 chr13 27750212 27750315 -91994583 - Tigger2a DNA MER2_type -331 103 1 2753 200 28 7 chr13 27750317 27751121 -91993777 - L1MD2 LINE L1 -532 6638 5816 253 301 19 0 chr13 27751433 27751536 -91993362 - L1ME LINE L1 -296 5825 5721 207 0 0 0 chr13 27752114 27752137 -91992761 + (A)n Simple_repeat Simple_repeat 1 23 0 315 0 0 0 chr13 27752388 27752423 -91992475 + (CA)n Simple_repeat Simple_repeat 2 36 0 27 0 0 0 chr13 27755510 27755537 -91989361 + AT_rich Low_complexity Low_complexity 1 27 0 1087 184 53 5 chr13 27755552 27755758 -91989140 + MER20 DNA MER1_type 4 219 0 5345 239 72 9 chr13 27756741 27758657 -91986241 - L1MD2 LINE L1 -1726 5231 3195 6632 222 48 20 chr13 27758701 27760641 -91984257 - L1MD2 LINE L1 -4846 2009 11 327 293 8 24 chr13 27760892 27761015 -91983883 + L1MD2 LINE L1 6229 6349 -10 29 60 0 0 chr13 27761035 27761085 -91983813 + AT_rich Low_complexity Low_complexity 1 50 0 710 276 245 17 chr13 27761230 27761708 -91983190 + L2 LINE L2 1758 2344 -970 861 187 52 30 chr13 27761712 27761942 -91982956 - MLT1C LTR MaLR -227 240 6 270 319 21 14 chr13 27761959 27762103 -91982795 + L2 LINE L2 3150 3294 -19 182 218 0 18 chr13 27762644 27762699 -91982199 + (TG)n Simple_repeat Simple_repeat 1 54 0 538 223 121 0 chr13 27762718 27762875 -91982023 + MER96B DNA MER1_type? 1 176 -241 24 32 0 0 chr13 27763182 27763213 -91981685 + AT_rich Low_complexity Low_complexity 1 31 0 803 276 46 17 chr13 27763254 27763493 -91981405 + L2 LINE L2 2147 2392 -922 1645 156 125 3 chr13 27763800 27764121 -91980777 + MLT1A1 LTR MaLR 5 364 -1 27 0 0 0 chr13 27764711 27764738 -91980160 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 27766513 27766536 -91978362 + AT_rich Low_complexity Low_complexity 1 23 0 189 229 42 0 chr13 27767564 27767612 -91977286 + L2 LINE L2 3264 3313 0 249 236 18 0 chr13 27767686 27767741 -91977157 - MER45 DNA AcHobo -9 1572 1517 24 0 0 0 chr13 27767981 27768005 -91976893 + AT_rich Low_complexity Low_complexity 1 24 0 444 353 18 0 chr13 27768285 27768452 -91976446 - MIR3 SINE MIR -5 203 34 1870 254 36 14 chr13 27768507 27769000 -91975898 + MLT1J LTR MaLR 5 508 -3 249 33 0 0 chr13 27769421 27769451 -91975447 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr13 27771211 27771233 -91973665 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr13 27771674 27771704 -91973194 + (CA)n Simple_repeat Simple_repeat 1 30 0 1210 161 60 0 chr13 27772717 27772935 -91971963 - MER46A DNA MER2_type -5 231 1 23 0 0 0 chr13 27773146 27773169 -91971729 + AT_rich Low_complexity Low_complexity 1 23 0 2406 71 0 3 chr13 27773202 27773499 -91971399 - AluY SINE Alu -15 296 1 3443 211 29 17 chr13 27774181 27775069 -91969829 + L1P LINE L1 4499 5397 -749 * 5739 118 15 3 chr13 27775068 27776598 -91968300 + L1PA11 LINE L1 4360 5907 -267 2278 59 3 3 chr13 27776600 27776886 -91968012 + AluY SINE Alu 1 286 -25 849 249 186 16 chr13 27777006 27777387 -91967511 + L2 LINE L2 2868 3313 0 1452 141 25 7 chr13 27778092 27778375 -91966523 - MSTB1 LTR MaLR 0 432 145 277 208 0 0 chr13 27778567 27778620 -91966278 - MLT1H1 LTR MaLR -161 394 342 2511 78 0 0 chr13 27778620 27778929 -91965969 + AluY SINE Alu 1 309 -2 1766 76 61 11 chr13 27778929 27779191 -91965707 + L1PA11 LINE L1 5900 6174 0 4673 113 9 8 chr13 27779191 27779960 -91964938 + L1PA16 LINE L1 5388 6157 -9 212 331 107 0 chr13 27780487 27780608 -91964290 - MIR SINE MIR -6 256 123 2106 123 0 0 chr13 27781868 27782153 -91962745 - AluSg SINE Alu -21 289 5 2025 231 66 42 chr13 27782480 27782869 -91962029 + MLT1E LTR MaLR 1 410 -183 753 228 0 6 chr13 27782869 27783031 -91961867 + FRAM SINE Alu 1 161 -5 2025 231 66 42 chr13 27783031 27783218 -91961680 + MLT1E LTR MaLR 410 591 -2 259 274 81 65 chr13 27783262 27783386 -91961512 + L2 LINE L2 3139 3264 -8 198 103 0 0 chr13 27783396 27783425 -91961473 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 204 232 18 36 chr13 27783908 27783964 -91960934 - MIR SINE MIR -98 164 110 2223 113 7 7 chr13 27784665 27784974 -91959924 - AluSx SINE Alu -3 309 1 703 267 24 6 chr13 27785010 27785175 -91959723 + MER5A DNA MER1_type 18 185 -4 23 92 0 0 chr13 27785194 27785259 -91959639 + AT_rich Low_complexity Low_complexity 1 65 0 2160 69 0 15 chr13 27785260 27785534 -91959364 + AluY SINE Alu 28 297 -14 183 306 0 32 chr13 27785615 27785677 -91959221 + L2 LINE L2 3247 3306 -7 369 179 16 190 chr13 27788259 27788443 -91956455 + MIR SINE MIR 104 255 -7 650 197 48 0 chr13 27788759 27788906 -91955992 - L1MB8 LINE L1 -9 6169 6016 284 167 69 0 chr13 27788979 27789081 -91955817 + (TA)n Simple_repeat Simple_repeat 1 109 0 2762 177 32 18 chr13 27789101 27789660 -91955238 + L1MB3 LINE L1 20 586 -5798 1313 121 5 53 chr13 27789683 27789890 -91955008 + AluSg/x SINE Alu 111 307 -5 1951 145 60 32 chr13 27789893 27790375 -91954523 + L1MB3 LINE L1 1182 1730 -4652 3693 195 65 27 chr13 27790395 27791216 -91953682 - MER21B LTR ERV1 -11 852 1 4904 117 30 18 chr13 27791216 27792220 -91952678 + L1MB3 LINE L1 1616 2634 -3748 388 177 0 0 chr13 27792222 27792284 -91952614 - Tigger7 DNA MER2_type -1 2486 2425 1324 181 23 15 chr13 27792297 27792556 -91952342 - Tigger7 DNA MER2_type -472 261 1 2039 112 49 0 chr13 27792614 27792901 -91951997 + AluSq SINE Alu 1 301 -12 2425 237 38 4 chr13 27792917 27793707 -91951191 + L1MB3 LINE L1 2662 3478 -2904 1511 230 15 0 chr13 27793704 27794096 -91950802 + L1MB3 LINE L1 4943 5340 -1042 * 3870 199 12 8 chr13 27794300 27795190 -91949708 - L1 LINE L1 -1710 4436 3543 1420 219 64 75 chr13 27795417 27795965 -91948933 - MLT1F1 LTR MaLR 0 567 1 279 313 31 0 chr13 27796068 27796164 -91948734 + MIR3 SINE MIR 85 183 -25 216 242 0 32 chr13 27796746 27796808 -91948090 + CT-rich Low_complexity Low_complexity 3 62 0 2540 124 11 0 chr13 27797632 27798003 -91946895 - THE1C LTR MaLR 0 375 1 248 281 16 0 chr13 27798323 27798387 -91946511 + L2 LINE L2 3203 3267 -5 1812 140 37 0 chr13 27798812 27799083 -91945815 + AluSx SINE Alu 5 285 -27 249 83 0 0 chr13 27799083 27799119 -91945779 + (CA)n Simple_repeat Simple_repeat 2 37 0 256 263 0 0 chr13 27799638 27799714 -91945184 + (TATAA)n Simple_repeat Simple_repeat 2 77 0 3584 169 7 16 chr13 27799762 27800454 -91944444 + L1MB3 LINE L1 5692 6377 -42 280 130 145 0 chr13 27800562 27800631 -91944267 + L1MB3 LINE L1 6104 6182 -1 1404 113 45 9 chr13 27802039 27802261 -91942637 - MER30 DNA MER1_type 0 230 1 621 273 32 14 chr13 27802280 27802496 -91942402 + MIR SINE MIR 33 252 -10 255 209 15 0 chr13 27802784 27802851 -91942047 + MLT2C1 LTR ERVL 6 73 -324 * 1255 239 19 38 chr13 27802847 27803215 -91941683 + MLT2C1 LTR ERVL 32 392 -5 322 268 55 9 chr13 27804109 27804250 -91940648 + HAL1b LINE L1 1219 6102 -19 478 39 65 0 chr13 27805082 27805159 -91939739 - L1MA4A LINE L1 -3 6300 6219 486 260 107 56 chr13 27805715 27806132 -91938766 + L2 LINE L2 2708 3165 -148 2139 121 0 0 chr13 27806132 27806442 -91938456 - AluSc SINE Alu 0 310 1 486 260 107 56 chr13 27806442 27806594 -91938304 + L2 LINE L2 3165 3308 -5 224 306 0 14 chr13 27806816 27806888 -91938010 - MIR SINE MIR -190 72 2 236 276 41 10 chr13 27807289 27807387 -91937511 - L1ME4a LINE L1 -11 6110 6010 289 301 108 32 chr13 27807406 27807592 -91937306 - MIR SINE MIR -14 248 49 225 213 38 38 chr13 27807986 27808066 -91936832 + (CTACT)n Simple_repeat Simple_repeat 2 81 0 1913 105 56 0 chr13 27809904 27810171 -91934727 + AluSx SINE Alu 1 282 -30 454 331 84 81 chr13 27810557 27811442 -91933456 + L3 LINE CR1 436 1322 -255 353 183 56 0 chr13 27812179 27812250 -91932648 + MIR SINE MIR 59 133 -129 26 0 0 0 chr13 27812370 27812396 -91932502 + AT_rich Low_complexity Low_complexity 1 26 0 1739 187 0 0 chr13 27812396 27812680 -91932218 + AluJo SINE Alu 1 284 -28 2080 234 49 24 chr13 27812945 27813603 -91931295 + L1M4c LINE L1 1067 1740 -4644 1468 219 0 24 chr13 27813741 27814038 -91930860 + AluJb SINE Alu 1 290 -22 3519 227 52 20 chr13 27814070 27815332 -91929566 + L1M4c LINE L1 2346 3648 -2734 295 340 34 25 chr13 27815820 27815956 -91928942 - MER5A DNA MER1_type -3 175 44 227 219 68 137 chr13 27815840 27815986 -91928912 + MER5A DNA MER1_type 42 177 -12 * 2085 204 12 66 chr13 27816191 27816770 -91928128 + LTR55 LTR ERV 1 548 0 550 275 62 38 chr13 27817271 27817511 -91927387 - L2 LINE L2 -223 3049 2804 1549 239 155 45 chr13 27817546 27818521 -91926377 - L1MC4 LINE L1 0 8042 6961 306 287 139 0 chr13 27821036 27821144 -91923754 - L2 LINE L2 -4 3309 3187 359 325 49 18 chr13 27821573 27821736 -91923162 - MIR3 SINE MIR 0 208 41 699 260 137 13 chr13 27822427 27822727 -91922171 - L2 LINE L2 -785 2529 2193 2142 126 10 0 chr13 27823779 27824088 -91920810 + AluSx SINE Alu 1 312 0 9312 128 49 33 chr13 27824338 27826667 -91918231 - L1P3 LINE L1 -3408 3053 595 11744 185 20 10 chr13 27827739 27831503 -91913395 - L1PB1 LINE L1 -5 6146 2351 1188 273 62 18 chr13 27831586 27832464 -91912434 - L1M4c LINE L1 -4366 2197 1123 1692 246 45 9 chr13 27832465 27832891 -91912007 - MLT1E2 LTR MaLR -49 577 137 1337 197 166 15 chr13 27832961 27833286 -91911612 - MLT1A2 LTR MaLR 0 374 1 272 330 75 82 chr13 27833649 27833882 -91911016 + L2 LINE L2 1678 1908 -1406 1771 164 3 23 chr13 27833882 27834186 -91910712 - AluJo SINE Alu -14 298 1 272 330 75 82 chr13 27834186 27834389 -91910509 + L2 LINE L2 1908 2111 -1203 3718 71 34 0 chr13 27834418 27834914 -91909984 + LTR10D LTR ERV1 1 513 0 399 271 139 20 chr13 27834914 27835065 -91909833 + MIR SINE MIR 42 210 -52 285 140 67 35 chr13 27835246 27835280 -91909618 - L1MB7 LINE L1 -20 6164 6133 2425 67 10 0 chr13 27835280 27835577 -91909321 - AluY SINE Alu -11 300 1 285 140 67 35 chr13 27835577 27835885 -91909013 - L1MB7 LINE L1 -51 6133 5689 * 1153 205 39 6 chr13 27835884 27836240 -91908658 - L1MEc LINE L1 -5276 1120 753 1504 211 14 3 chr13 27836249 27836534 -91908364 - AluJb SINE Alu -24 288 1 734 151 7 82 chr13 27836534 27836680 -91908218 - AluJo SINE Alu -177 135 1 285 276 0 0 chr13 27836687 27836774 -91908124 - L1MEc LINE L1 -5652 744 658 1982 278 162 21 chr13 27838583 27839572 -91905326 - L2 LINE L2 -343 2971 1844 1974 127 43 0 chr13 27839964 27840264 -91904634 + AluSq SINE Alu 1 313 0 2088 117 64 19 chr13 27840535 27840894 -91904004 + THE1C LTR MaLR 1 375 0 312 228 111 76 chr13 27840946 27841117 -91903781 - MIR SINE MIR -42 220 44 3213 220 18 22 chr13 27841277 27842196 -91902702 - L1ME1 LINE L1 -113 6053 5137 1091 182 40 16 chr13 27842207 27842454 -91902444 + L1MB2 LINE L1 5919 6171 0 22 0 0 0 chr13 27842489 27842511 -91902387 + AT_rich Low_complexity Low_complexity 1 22 0 611 226 43 22 chr13 27842538 27842768 -91902130 - L1ME1 LINE L1 -3191 2955 2721 686 265 45 34 chr13 27842769 27843124 -91901774 - L1ME1 LINE L1 -3470 2676 2318 1575 127 35 0 chr13 27843138 27843452 -91901446 - L1PA15 LINE L1 -7 6861 6490 * 2473 152 2 30 chr13 27843444 27844138 -91900760 - L1PA15 LINE L1 -634 6234 5565 7496 237 36 13 chr13 27844155 27846354 -91898544 - L1PA15 LINE L1 -2546 4303 2062 1875 32 119 4 chr13 27846354 27846605 -91898293 - L1PA4 LINE L1 0 6155 5876 7496 237 36 13 chr13 27846605 27847010 -91897888 - L1PA15 LINE L1 -4787 2062 1668 204 40 0 0 chr13 27848304 27848329 -91896569 + (T)n Simple_repeat Simple_repeat 1 25 0 235 254 0 0 chr13 27848336 27848403 -91896495 - L1MEc LINE L1 -3984 2412 2346 362 207 103 21 chr13 27848419 27848564 -91896334 - L1MEc LINE L1 -4097 2299 2143 2130 107 35 0 chr13 27848566 27848856 -91896042 - AluSx SINE Alu -12 300 1 1099 284 76 48 chr13 27848857 27849582 -91895316 - L1MEc LINE L1 -5560 836 92 1852 171 0 3 chr13 27849762 27850055 -91894843 - AluSx SINE Alu -20 292 1 352 316 9 18 chr13 27850764 27850878 -91894020 - L3 LINE CR1 -490 1087 975 23 0 0 0 chr13 27851312 27851335 -91893563 + AT_rich Low_complexity Low_complexity 1 23 0 234 331 139 57 chr13 27851912 27852336 -91892562 - L2 LINE L2 -224 3048 2587 5430 131 29 10 chr13 27852399 27853356 -91891542 - L1PA14 LINE L1 -2 6159 5194 352 264 90 49 chr13 27853533 27853677 -91891221 + MIR SINE MIR 100 249 -13 419 330 58 29 chr13 27853694 27854116 -91890782 + L2 LINE L2 2791 3222 -91 734 186 79 0 chr13 27854245 27854385 -91890513 - MER58A DNA MER1_type 0 157 7 203 313 111 20 chr13 27854433 27854532 -91890366 - L2 LINE L2 -1 3312 3205 304 314 114 43 chr13 27854675 27855000 -91889898 - L2 LINE L2 -780 2534 2187 278 333 35 11 chr13 27855838 27855925 -91888973 - L2 LINE L2 -9 3304 3216 493 290 65 55 chr13 27856154 27856464 -91888434 - L2 LINE L2 -459 2855 2543 2347 181 75 22 chr13 27856492 27856984 -91887914 - MLT2B1 LTR ERVL -2 518 1 207 255 21 0 chr13 27857259 27857306 -91887592 + L2 LINE L2 3181 3228 -44 194 225 50 0 chr13 27857473 27857513 -91887385 - L2 LINE L2 -6 3266 3225 675 265 88 96 chr13 27857640 27858350 -91886548 - HAL1 LINE L1 -755 1752 1038 2194 100 3 35 chr13 27858350 27858669 -91886229 - AluSg SINE Alu 0 310 2 675 265 88 96 chr13 27858669 27858782 -91886116 - HAL1 LINE L1 -1469 1038 934 2258 80 0 7 chr13 27858782 27859070 -91885828 - AluSg SINE Alu -2 308 23 675 265 88 96 chr13 27859070 27859161 -91885737 - HAL1 LINE L1 -1573 934 844 215 146 98 0 chr13 27859588 27859629 -91885269 + MIR SINE MIR 218 262 0 311 301 155 39 chr13 27861253 27861725 -91883173 + L2 LINE L2 2467 3107 -165 1547 173 28 20 chr13 27862181 27862534 -91882364 - L1MB7 LINE L1 -11 6173 5818 315 333 38 33 chr13 27862812 27862995 -91881903 - MLT1F-int LTR MaLR -488 883 700 487 295 10 78 chr13 27863188 27863483 -91881415 - MLT1F-int LTR MaLR -770 601 327 278 253 79 84 chr13 27863478 27863680 -91881218 - MLT1F-int LTR MaLR -1170 201 1 * 1864 209 46 20 chr13 27863680 27864140 -91880758 - MLT1F LTR MaLR 0 542 71 381 310 86 17 chr13 27864267 27864441 -91880457 - MIR SINE MIR -3 259 74 216 331 86 51 chr13 27864928 27865103 -91879795 + L2 LINE L2 3092 3272 0 3311 212 73 14 chr13 27865840 27867486 -91877412 - L1MB5 LINE L1 -9 6165 4416 2480 60 52 0 chr13 27867728 27868075 -91876823 - MLT2A2 LTR ERVL 0 453 89 2145 129 3 0 chr13 27868085 27868380 -91876518 - AluSq SINE Alu -17 296 1 1095 180 78 25 chr13 27868407 27868691 -91876207 - LTR52 LTR ERVL -107 314 16 829 237 11 0 chr13 27868702 27868879 -91876019 - LTR52-int LTR ERVL 0 3556 3378 3599 231 63 56 chr13 27869103 27869432 -91875466 - LTR52-int LTR ERVL -228 3328 3003 1598 214 65 3 chr13 27869432 27869783 -91875115 + MLT1A2 LTR MaLR 2 374 0 3599 231 63 56 chr13 27869783 27870524 -91874374 - LTR52-int LTR ERVL -553 3003 2251 3521 198 65 78 chr13 27870696 27871740 -91873158 - LTR52-int LTR ERVL -3587 2098 1069 509 165 21 0 chr13 27871847 27871944 -91872954 - LTR52-int LTR ERVL -2616 940 842 186 133 0 0 chr13 27871951 27871981 -91872917 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 2008 138 6 32 chr13 27871981 27872293 -91872605 - AluSx SINE Alu -8 304 1 1804 161 42 17 chr13 27872337 27872698 -91872200 + MSTB LTR MaLR 1 370 -56 5574 134 36 3 chr13 27872723 27873870 -91871028 - L1PA16 LINE L1 -2 6164 5000 5456 180 20 1 chr13 27873870 27875044 -91869854 - L1 LINE L1 -1297 5500 4304 245 149 0 0 chr13 27875042 27875089 -91869809 - L1 LINE L1 -1496 5301 5255 * 284 145 48 0 chr13 27875101 27875163 -91869735 - L1 LINE L1 -2494 4303 4239 * 5038 226 30 12 chr13 27875135 27875221 -91869677 - L1PA13 LINE L1 -3025 3772 3689 2283 99 0 3 chr13 27875221 27875515 -91869383 + AluY SINE Alu 1 293 -18 5038 226 30 12 chr13 27875515 27877820 -91867078 - L1PA13 LINE L1 -3108 3689 1330 1674 316 15 13 chr13 27878057 27878668 -91866230 - L1PA13 LINE L1 -6175 612 1 313 169 31 0 chr13 27878675 27878740 -91866158 + MSTB LTR MaLR 360 426 0 1887 223 80 61 chr13 27878774 27879425 -91865473 - LTR52-int LTR ERVL -2882 674 12 352 200 27 0 chr13 27879432 27879503 -91865395 - LTR52 LTR ERVL 0 421 349 2283 189 17 28 chr13 27879503 27880022 -91864876 + LTR27 LTR ERV1 1 577 -138 249 218 67 99 chr13 27880037 27880219 -91864679 + LTR27 LTR ERV1 500 636 0 1026 184 33 95 chr13 27880225 27880561 -91864337 - LTR52 LTR ERVL -74 347 33 2312 117 0 0 chr13 27880599 27880899 -91863999 + AluSc SINE Alu 1 300 -9 1485 209 14 3 chr13 27880924 27881279 -91863619 - L1 LINE L1 -1725 4421 4063 322 313 47 16 chr13 27882807 27882935 -91861963 - MIR SINE MIR -108 154 23 21 0 0 0 chr13 27883422 27883443 -91861455 + AT_rich Low_complexity Low_complexity 1 21 0 2835 182 15 26 chr13 27885883 27886486 -91858412 - MER7C DNA MER2_type -1 601 6 344 211 158 0 chr13 27886915 27887010 -91857888 - MIR3 SINE MIR -11 197 88 236 315 121 6 chr13 27887154 27887319 -91857579 - L3 LINE CR1 -96 1481 1298 1314 168 17 4 chr13 27887672 27887904 -91856994 + MER46A DNA MER2_type 2 236 0 195 402 52 35 chr13 27888695 27889043 -91855855 + L2 LINE L2 2112 2465 -849 1951 126 29 0 chr13 27889059 27889337 -91855561 - AluSg1 SINE Alu -23 286 1 213 336 42 17 chr13 27889908 27890027 -91854871 + L2 LINE L2 3160 3281 -32 283 125 62 0 chr13 27890491 27890539 -91854359 + U2 snRNA snRNA 1 51 -137 266 217 6 93 chr13 27891532 27891693 -91853205 + L1MC5 LINE L1 7764 7910 -51 26 30 0 0 chr13 27891731 27891764 -91853134 + AT_rich Low_complexity Low_complexity 1 33 0 1575 129 64 10 chr13 27891802 27891946 -91852952 - L1MA9 LINE L1 0 6312 6177 189 107 0 0 chr13 27891946 27891974 -91852924 + (TG)n Simple_repeat Simple_repeat 1 28 0 1575 129 64 10 chr13 27891974 27892124 -91852774 - L1MA9 LINE L1 -135 6177 6002 799 215 30 80 chr13 27892142 27892379 -91852519 + MIR SINE MIR 12 236 -26 272 273 56 56 chr13 27893593 27893736 -91851162 + MIR3 SINE MIR 61 203 -5 201 363 79 25 chr13 27894312 27894552 -91850346 - L2 LINE L2 -1890 1424 1172 692 226 100 0 chr13 27894932 27895122 -91849776 + MER3 DNA MER1_type 1 209 0 2432 141 29 14 chr13 27895280 27895698 -91849200 + MSTA LTR MaLR 1 424 -4 2539 185 43 21 chr13 27897598 27898132 -91846766 - MER44D DNA MER2_type -4 601 1 274 315 62 51 chr13 27899381 27899559 -91845339 - MIR3 SINE MIR -2 206 27 290 282 112 16 chr13 27899908 27900096 -91844802 + MIR3 SINE MIR 3 208 0 1379 206 33 23 chr13 27900768 27901074 -91843824 - MLT2B1 LTR ERVL -211 309 1 313 276 73 83 chr13 27901074 27901483 -91843415 + L1ME LINE L1 5263 5667 -454 8736 198 55 54 chr13 27951675 27952616 -91792282 - ERVL LTR ERVL -3677 2087 1148 183 103 77 26 chr13 27952616 27952655 -91792243 + MER5B DNA MER1_type 84 124 -54 8736 198 55 54 chr13 27952655 27953682 -91791216 - ERVL LTR ERVL -4616 1148 79 425 215 32 11 chr13 27953689 27953782 -91791116 - MIR SINE MIR -89 173 79 2221 125 3 0 chr13 27953828 27954193 -91790705 - AluSx SINE Alu 0 366 1 215 359 75 19 chr13 27954367 27954526 -91790372 - L3 LINE CR1 -789 788 621 640 254 59 32 chr13 27955808 27956028 -91788870 + MIR SINE MIR 3 228 -34 1879 98 119 28 chr13 27956259 27956544 -91788354 - AluSx SINE Alu -1 311 1 828 236 31 145 chr13 27956940 27957405 -91787493 + L1MC4 LINE L1 6688 7023 -938 1672 76 34 42 chr13 27957405 27957478 -91787420 + L1MA4 LINE L1 6034 6106 -194 2083 128 0 10 chr13 27957478 27957782 -91787116 - AluSq SINE Alu -12 301 1 1672 76 34 42 chr13 27957782 27957971 -91786927 + L1MA4 LINE L1 6106 6294 -6 828 236 31 145 chr13 27957971 27958147 -91786751 + L1MC4 LINE L1 7023 7218 -743 286 307 115 0 chr13 27958144 27958391 -91786507 + L1MC5 LINE L1 7244 7414 -394 * 2057 128 0 0 chr13 27958637 27958925 -91785973 - AluSx SINE Alu -24 288 1 24 32 0 0 chr13 27958994 27959025 -91785873 + AT_rich Low_complexity Low_complexity 1 31 0 1617 87 28 90 chr13 27959269 27959557 -91785341 + L1MA9 LINE L1 6038 6307 -5 2915 223 102 26 chr13 27961050 27962022 -91782876 + L1MDb LINE L1 917 1927 -4613 1489 75 4 120 chr13 27962023 27962264 -91782634 + AluSx SINE Alu 1 213 -99 246 276 26 0 chr13 27962419 27962495 -91782403 + L1MDb LINE L1 1929 2006 -4534 * 475 108 0 0 chr13 27962491 27962556 -91782342 + L1P5 LINE L1 5718 5782 -369 361 115 0 0 chr13 27962557 27962609 -91782289 + MADE1 DNA Mariner 1 52 -28 645 216 53 12 chr13 27962615 27962786 -91782112 + L1MDb LINE L1 1376 1553 -4987 269 0 0 0 chr13 27962826 27962857 -91782041 + MADE1 DNA Mariner 36 66 -14 253 0 0 0 chr13 27962857 27962886 -91782012 + MADE1 DNA Mariner 38 66 -14 348 45 0 0 chr13 27962913 27962957 -91781941 + MADE1 DNA Mariner 36 79 -1 761 16 57 0 chr13 27962958 27963081 -91781817 + (TA)n Simple_repeat Simple_repeat 1 130 0 2539 109 20 0 chr13 27963081 27963429 -91781469 + L1PB3 LINE L1 5792 6146 -8 342 67 0 0 chr13 27963435 27963480 -91781418 + (TG)n Simple_repeat Simple_repeat 2 46 0 25 0 0 0 chr13 27963480 27963505 -91781393 + AT_rich Low_complexity Low_complexity 1 25 0 1438 223 95 20 chr13 27963506 27963999 -91780899 + L1MDb LINE L1 2020 2549 -3991 547 242 135 17 chr13 27964019 27964197 -91780701 + MER58A DNA MER1_type 48 212 -12 447 222 14 77 chr13 27964209 27964416 -91780482 + L1MDb LINE L1 2556 2749 -3791 361 329 32 7 chr13 27967428 27967583 -91777315 - MER5B DNA MER1_type -2 176 18 304 330 59 38 chr13 27968410 27968538 -91776360 + L1M4 LINE L1 5091 5228 -918 1809 146 6 56 chr13 27968538 27968859 -91776039 + AluSx SINE Alu 1 305 -7 304 330 59 38 chr13 27968859 27968969 -91775929 + L1M4 LINE L1 5228 5334 -812 384 104 0 0 chr13 27969991 27970058 -91774840 + LOR1-int LTR ERV1 2560 2626 -5494 765 255 104 68 chr13 27970058 27970377 -91774521 - L1MEd LINE L1 -4911 1208 902 4385 92 2 5 chr13 27970377 27970933 -91773965 + MER41A LTR ERV1 1 554 0 765 255 104 68 chr13 27970933 27971217 -91773681 - L1MEd LINE L1 -5217 902 583 2273 114 0 9 chr13 27971348 27971663 -91773235 - AluSx SINE Alu 0 312 1 475 276 147 6 chr13 27972235 27972398 -91772500 - MER5A DNA MER1_type 0 189 4 490 117 39 39 chr13 27972778 27972881 -91772017 + LTR16A1 LTR ERVL 341 443 -14 313 182 18 0 chr13 27973409 27973464 -91771434 - L2 LINE L2 -4 3309 3254 551 297 53 30 chr13 27974300 27974563 -91770335 + L2 LINE L2 2366 2634 -680 624 171 0 0 chr13 27974566 27974671 -91770227 + MER4D LTR ERV1 110 214 -689 837 258 80 76 chr13 27974929 27975405 -91769493 - MLT1J LTR MaLR 0 511 34 3272 223 24 19 chr13 27975693 27976517 -91768381 + L1MDa LINE L1 2541 3373 -3167 1324 117 0 11 chr13 27976684 27976863 -91768035 - AluSq SINE Alu -16 297 121 499 293 51 40 chr13 27976966 27977318 -91767580 + L1MC5 LINE L1 7372 7727 -234 2073 130 26 13 chr13 27977371 27977645 -91767253 + AluSx SINE Alu 1 281 -31 204 67 0 0 chr13 27977645 27977675 -91767223 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2073 130 26 13 chr13 27977675 27977707 -91767191 + AluSx SINE Alu 281 311 -1 225 267 30 52 chr13 27977805 27977940 -91766958 + L1MC5 LINE L1 7806 7937 -24 330 153 97 0 chr13 27978440 27978512 -91766386 - L1MB2 LINE L1 -7 6164 6086 390 184 0 13 chr13 27978543 27978619 -91766279 + Tigger5 DNA MER2_type 2243 2317 -6 304 203 116 0 chr13 27978623 27978692 -91766206 - Tigger5 DNA MER2_type -2246 77 1 1389 137 39 0 chr13 27978692 27978926 -91765972 - L1MB2 LINE L1 -82 6089 5847 463 133 33 0 chr13 27978990 27979080 -91765818 - L1MB2 LINE L1 -338 5845 5753 250 282 70 54 chr13 27979263 27979356 -91765542 - L1MEc LINE L1 -5302 903 813 2017 172 0 0 chr13 27979356 27979658 -91765240 - AluJb SINE Alu -10 302 1 250 282 70 54 chr13 27979658 27979872 -91765026 - L1MEc LINE L1 -5392 813 651 375 328 95 4 chr13 27980237 27980478 -91764420 - L1MEc LINE L1 -6096 300 38 2132 200 11 27 chr13 27981503 27981977 -91762921 - MER31B LTR ERV1 0 466 1 481 311 29 69 chr13 27982345 27982622 -91762276 - L2 LINE L2 0 3272 3007 304 354 56 21 chr13 27982792 27983077 -91761821 - L2 LINE L2 -537 2777 2483 424 62 0 46 chr13 27983460 27983525 -91761373 - Alu SINE Alu -247 64 3 1467 285 61 53 chr13 27983532 27983914 -91760984 - L1M4 LINE L1 -694 5480 5103 2006 128 0 17 chr13 27983914 27984233 -91760665 - AluSx SINE Alu 0 314 1 1467 285 61 53 chr13 27984233 27985647 -91759251 - L1M4 LINE L1 -1071 5103 3664 1244 164 0 15 chr13 27985708 27985909 -91758989 + AluJo SINE Alu 7 204 -108 999 301 78 27 chr13 27986393 27987034 -91757864 + L2 LINE L2 2466 3137 -176 2068 111 21 0 chr13 27987066 27987370 -91757528 + AluSx SINE Alu 1 310 0 180 309 176 22 chr13 27987763 27987899 -91756999 + MIR SINE MIR 86 242 -20 2285 104 10 0 chr13 27988028 27988327 -91756571 - AluSx SINE Alu -10 302 1 369 259 152 12 chr13 27988623 27988866 -91756032 + L1ME4a LINE L1 5600 5876 -245 21 0 0 0 chr13 27988942 27988963 -91755935 + AT_rich Low_complexity Low_complexity 1 21 0 281 221 42 11 chr13 27989086 27989181 -91755717 + (TA)n Simple_repeat Simple_repeat 1 98 0 3397 126 40 5 chr13 27989313 27989867 -91755031 + Tigger3(Golem) DNA MER2_type 2457 3029 0 180 152 0 0 chr13 27989874 27989907 -91754991 + (TATG)n Simple_repeat Simple_repeat 3 35 0 836 123 20 20 chr13 27990086 27990232 -91754666 - L1MB8 LINE L1 -5 6173 6028 390 195 145 19 chr13 27991370 27991529 -91753369 - MER97a DNA MER1_type? -28 866 688 1315 277 40 11 chr13 27991530 27991977 -91752921 + L1MC4 LINE L1 7432 7891 -151 913 230 9 22 chr13 27992073 27992299 -91752599 - MER97a DNA MER1_type? -667 227 5 294 370 69 12 chr13 27993237 27993410 -91751488 - MER5A DNA MER1_type -2 187 5 246 280 30 40 chr13 27993419 27993519 -91751379 + MIR SINE MIR 30 128 -80 388 227 241 20 chr13 27994059 27994262 -91750636 + L2 LINE L2 2841 3088 -225 270 0 0 0 chr13 27994481 27994511 -91750387 + (TG)n Simple_repeat Simple_repeat 2 31 0 193 320 13 26 chr13 27996279 27996357 -91748541 - L2 LINE L2 -17 3255 3179 1321 133 9 39 chr13 27997002 27997235 -91747663 + MER4D LTR ERV1 678 903 0 613 141 0 10 chr13 27997272 27997371 -91747527 + MER4A LTR ERV1 1 98 -566 1930 111 3 24 chr13 27997371 27997724 -91747174 + MER4A LTR ERV1 261 664 0 985 175 113 0 chr13 27998439 27998668 -91746230 - L1MB3 LINE L1 -2 6181 5927 230 185 31 15 chr13 27998730 27998795 -91746103 + L1ME1 LINE L1 6094 6159 -7 1551 147 11 92 chr13 27998952 27999189 -91745709 + L1MB3 LINE L1 5834 6036 -147 2240 89 33 7 chr13 27999189 27999493 -91745405 - AluSx SINE Alu 0 312 1 1551 147 11 92 chr13 27999493 27999602 -91745296 + L1MB3 LINE L1 6036 6152 -31 218 155 52 17 chr13 27999615 27999673 -91745225 + (TTTA)n Simple_repeat Simple_repeat 4 63 0 261 343 71 29 chr13 28001313 28001453 -91743445 - MIR SINE MIR -115 147 2 738 111 23 32 chr13 28001472 28001693 -91743205 + (TCCA)n Simple_repeat Simple_repeat 1 219 0 198 348 141 0 chr13 28002181 28002273 -91742625 + MIR SINE MIR 42 146 -62 2548 105 40 14 chr13 28002372 28002725 -91742173 - THE1B LTR MaLR -2 362 1 2324 100 0 0 chr13 28004194 28004494 -91740404 - AluY SINE Alu -11 300 1 707 179 21 0 chr13 28004652 28004797 -91740101 + L1MA4A LINE L1 6154 6301 -2 488 178 57 19 chr13 28006070 28006227 -91738671 + L1MCa LINE L1 2306 2468 -3958 929 158 0 0 chr13 28006229 28006362 -91738536 + FLAM_C SINE Alu 1 133 0 1345 170 123 38 chr13 28006380 28006477 -91738421 + MSTD LTR MaLR 1 88 -308 1124 154 6 11 chr13 28006477 28006652 -91738246 + FAM SINE Alu 1 174 -1 1345 170 123 38 chr13 28006652 28006919 -91737979 + MSTD LTR MaLR 88 396 0 726 253 52 17 chr13 28006919 28007152 -91737746 + L1MCa LINE L1 2491 2731 -3695 1152 156 6 0 chr13 28007381 28007548 -91737350 + AluJ SINE Alu 115 282 -30 204 135 0 0 chr13 28007550 28007587 -91737311 + (TC)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr13 28007592 28007613 -91737285 + (TG)n Simple_repeat Simple_repeat 2 22 0 191 325 68 77 chr13 28008504 28008621 -91736277 + L3b LINE CR1 1445 1560 -23 674 205 94 0 chr13 28009442 28009613 -91735285 - MER53 DNA DNA 0 189 3 1022 176 11 0 chr13 28010667 28010855 -91734043 - MLT1A1 LTR MaLR -175 190 1 359 262 153 15 chr13 28012436 28012468 -91732430 + MER112 DNA MER1_type 29 55 -205 387 0 0 0 chr13 28012468 28012511 -91732387 + (CA)n Simple_repeat Simple_repeat 2 44 0 359 262 153 15 chr13 28012511 28012680 -91732218 + MER112 DNA MER1_type 55 258 -2 348 318 7 7 chr13 28013248 28013402 -91731496 + (CA)n Simple_repeat Simple_repeat 1 154 0 412 242 83 25 chr13 28013814 28013934 -91730964 - L2 LINE L2 -10 3262 3136 182 88 0 29 chr13 28018586 28018620 -91726278 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 350 71 29 chr13 28031308 28031448 -91713450 - MIR SINE MIR -115 147 2 738 111 23 32 chr13 28031467 28031688 -91713210 + (TCCA)n Simple_repeat Simple_repeat 1 219 0 190 316 86 70 chr13 28031701 28031888 -91713010 - L2 LINE L2 -38 3234 3045 213 222 0 0 chr13 28032973 28033018 -91711880 + MIR SINE MIR 101 145 -63 1355 155 10 113 chr13 28037694 28038003 -91706895 + AluJo SINE Alu 35 311 -1 368 266 44 35 chr13 28038565 28038768 -91706130 + L1MC4a LINE L1 5853 6057 -1751 622 233 23 79 chr13 28039295 28039561 -91705337 + MLT1J LTR MaLR 11 261 -250 285 256 96 24 chr13 28039595 28039720 -91705178 + MLT1J LTR MaLR 354 487 -24 21 0 0 0 chr13 28040400 28040421 -91704477 + AT_rich Low_complexity Low_complexity 1 21 0 261 272 143 47 chr13 28040870 28041149 -91703749 + MLT1J LTR MaLR 111 416 -95 1909 146 21 4 chr13 28043032 28043340 -91701558 + AluSx SINE Alu 1 313 0 404 247 34 102 chr13 28044653 28044888 -91700010 + MER112 DNA MER1_type 28 246 -14 344 277 105 45 chr13 28046549 28046816 -91698082 + L1ME4a LINE L1 5591 5873 -248 401 289 79 9 chr13 28046885 28046999 -91697899 + L2 LINE L2 3151 3272 0 26 0 0 0 chr13 28048112 28048138 -91696760 + AT_rich Low_complexity Low_complexity 1 26 0 2389 187 113 16 chr13 28048568 28049189 -91695709 + L1MC3 LINE L1 7104 7784 -1 302 315 54 0 chr13 28049563 28049674 -91695224 - MIR3 SINE MIR -7 201 85 203 326 68 30 chr13 28051509 28051641 -91693257 - MIR SINE MIR -50 212 76 211 291 109 18 chr13 28052384 28052537 -91692361 - MIR3 SINE MIR -39 169 1 544 304 52 5 chr13 28052543 28052737 -91692161 + Charlie8 DNA MER1_type 1 203 -2214 1932 93 54 32 chr13 28053666 28053979 -91690919 - THE1B LTR MaLR -44 320 1 2159 108 0 10 chr13 28055259 28055555 -91689343 + AluY SINE Alu 1 293 -18 306 0 0 0 chr13 28055598 28055632 -91689266 + (TG)n Simple_repeat Simple_repeat 2 35 0 434 300 82 39 chr13 28057743 28058000 -91686898 + L1ME4a LINE L1 5638 5905 -216 23 54 0 0 chr13 28058112 28058149 -91686749 + AT_rich Low_complexity Low_complexity 1 37 0 2417 76 3 0 chr13 28058264 28058555 -91686343 + AluSq SINE Alu 1 292 -21 1265 168 39 13 chr13 28058555 28058787 -91686111 + AluJb SINE Alu 59 296 -16 243 297 68 51 chr13 28059095 28059213 -91685685 - L2 LINE L2 -8 3264 3145 256 262 0 71 chr13 28059735 28059968 -91684930 + GA-rich Low_complexity Low_complexity 1 216 0 377 250 11 11 chr13 28060633 28060721 -91684177 + MER5B DNA MER1_type 1 88 -90 263 286 41 20 chr13 28061534 28061632 -91683266 + MIR SINE MIR 117 216 -46 207 0 0 0 chr13 28062117 28062140 -91682758 + (CCTAT)n Simple_repeat Simple_repeat 3 25 0 337 374 46 10 chr13 28062976 28063171 -91681727 - MIR SINE MIR -59 203 2 250 182 0 0 chr13 28064092 28064136 -91680762 + MER116 DNA Mariner 1 44 -36 2029 138 14 7 chr13 28065757 28066054 -91678844 - AluSx SINE Alu -13 299 1 256 275 38 0 chr13 28066550 28066630 -91678268 + MLT1E1 LTR MaLR 319 401 -253 * 1047 223 27 29 chr13 28066609 28066922 -91677976 + MLT1E LTR MaLR 272 547 -46 234 298 24 12 chr13 28067315 28067399 -91677499 - L2 LINE L2 -4 3268 3184 399 21 0 0 chr13 28068314 28068362 -91676536 + (CA)n Simple_repeat Simple_repeat 2 49 0 3257 113 51 2 chr13 28068517 28069004 -91675894 + MER9 LTR ERVK 1 511 0 181 255 248 60 chr13 28069716 28069865 -91675033 + L3 LINE CR1 901 1077 -500 378 277 91 41 chr13 28070956 28071168 -91673730 - L1MC4 LINE L1 0 8042 7807 2909 3 0 0 chr13 28071168 28071474 -91673424 + AluYa5 SINE Alu 1 306 -5 378 277 91 41 chr13 28071474 28071579 -91673319 - L1MC4 LINE L1 -235 7807 7709 3074 205 94 16 chr13 28071781 28072464 -91672434 + Charlie1 DNA MER1_type 1890 2647 -114 1904 171 0 10 chr13 28072464 28072768 -91672130 - AluJb SINE Alu -11 301 1 3074 205 94 16 chr13 28072768 28072893 -91672005 + Charlie1 DNA MER1_type 2647 2761 0 1974 130 56 37 chr13 28073386 28073762 -91671136 - Tigger3b DNA MER2_type 0 1232 850 402 167 75 46 chr13 28073789 28074044 -91670854 + (TGAG)n Simple_repeat Simple_repeat 1 262 0 957 152 45 15 chr13 28074046 28074216 -91670682 - Tigger3b DNA MER2_type -2144 884 706 2556 46 7 10 chr13 28074216 28074519 -91670379 - AluY SINE Alu -7 304 3 957 152 45 15 chr13 28074519 28074546 -91670352 - Tigger3b DNA MER2_type -2322 706 681 2630 48 0 10 chr13 28075199 28075509 -91669389 - AluY SINE Alu -2 309 3 2299 119 58 5 chr13 28075515 28075926 -91668972 - Tigger3b DNA MER2_type -528 703 271 306 190 139 13 chr13 28075927 28076006 -91668892 - L1MC4 LINE L1 -1342 6700 6612 1324 205 40 0 chr13 28076031 28076304 -91668594 - Tigger3b DNA MER2_type -947 284 1 23 33 0 0 chr13 28076446 28076476 -91668422 + AT_rich Low_complexity Low_complexity 1 30 0 398 270 108 9 chr13 28076530 28076641 -91668257 - L2 LINE L2 0 3313 3192 564 216 22 36 chr13 28077788 28077854 -91667044 - L1MA8 LINE L1 -5 6286 6221 1400 168 17 9 chr13 28077854 28078086 -91666812 + MER46A DNA MER2_type 1 234 -2 564 216 22 36 chr13 28078086 28078158 -91666740 - L1MA8 LINE L1 -70 6221 6150 864 190 123 0 chr13 28078615 28078810 -91666088 + MER20 DNA MER1_type 1 219 0 287 257 6 109 chr13 28079771 28079946 -91664952 - MIR SINE MIR 0 262 106 282 318 91 11 chr13 28080153 28080328 -91664570 + MIR SINE MIR 20 206 -56 629 146 16 24 chr13 28081561 28081684 -91663214 + L1MB3 LINE L1 6061 6182 -1 2764 187 64 3 chr13 28081709 28082287 -91662611 + L1MB7 LINE L1 5572 6184 0 409 219 6 130 chr13 28084137 28084306 -91660592 + MER58C DNA MER1_type 45 192 -23 332 163 33 43 chr13 28084862 28084954 -91659944 + LTR33 LTR ERVL 423 513 -8 208 191 85 0 chr13 28085208 28085255 -91659643 - L2 LINE L2 -8 3264 3214 206 298 95 0 chr13 28085286 28085370 -91659528 - MIR SINE MIR -116 146 55 298 264 103 0 chr13 28085866 28085953 -91658945 + MIR SINE MIR 64 159 -103 1601 152 7 39 chr13 28086062 28086371 -91658527 + AluJo SINE Alu 1 299 -13 369 228 315 0 chr13 28086373 28086500 -91658398 + MIR SINE MIR 92 258 -4 337 100 129 57 chr13 28086616 28086686 -91658212 - MADE1 DNA Mariner 0 80 6 642 148 4 179 chr13 28089100 28089329 -91655569 - MER53 DNA DNA 0 189 1 2202 77 7 3 chr13 28090141 28090441 -91654457 - AluY SINE Alu -10 301 1 1662 192 0 19 chr13 28091503 28091820 -91653078 + AluJo SINE Alu 1 311 -1 1911 113 0 8 chr13 28094861 28095127 -91649771 - AluSx SINE Alu -15 297 34 219 250 109 77 chr13 28095560 28095716 -91649182 - MIR3 SINE MIR -21 187 27 346 234 13 0 chr13 28097560 28097637 -91647261 - MIR SINE MIR -74 188 111 214 282 111 34 chr13 28097963 28098080 -91646818 - L2 LINE L2 -1 3271 3146 290 233 0 0 chr13 28098148 28098208 -91646690 + MER5A DNA MER1_type 47 106 -83 1870 86 0 107 chr13 28099619 28099956 -91644942 - AluSc SINE Alu -8 301 1 574 224 6 73 chr13 28100905 28101084 -91643814 - MER112 DNA MER1_type -91 169 3 226 217 319 0 chr13 28101849 28101918 -91642980 - L2 LINE L2 -6 3307 3217 330 259 159 45 chr13 28101920 28102121 -91642777 - L1ME4a LINE L1 -139 5982 5759 391 204 41 0 chr13 28103481 28103579 -91641319 + L1ME4a LINE L1 6011 6112 -9 1082 202 19 90 chr13 28103665 28104004 -91640894 + L1MC4 LINE L1 7686 7999 -43 1989 132 3 6 chr13 28104004 28104315 -91640583 - AluSx SINE Alu -2 310 1 1082 202 19 90 chr13 28104315 28104342 -91640556 + L1MC4 LINE L1 7999 8026 -16 408 263 191 26 chr13 28105299 28105493 -91639405 + MIR SINE MIR 37 262 0 330 169 0 0 chr13 28105878 28105943 -91638955 + (CA)n Simple_repeat Simple_repeat 2 66 0 1485 178 3 24 chr13 28106332 28106624 -91638274 + AluJb SINE Alu 1 286 -26 338 236 36 45 chr13 28106679 28106789 -91638109 - MIR SINE MIR -1 261 153 358 247 226 14 chr13 28108683 28108829 -91636069 + L2 LINE L2 2366 2542 -772 25 90 0 0 chr13 28110801 28110868 -91634030 + GC_rich Low_complexity Low_complexity 1 67 0 213 94 0 0 chr13 28111008 28111040 -91633858 + (CGGGG)n Simple_repeat Simple_repeat 1 32 0 205 78 0 78 chr13 28111200 28111251 -91633647 + (CCCCCG)n Simple_repeat Simple_repeat 1 47 0 612 140 7 127 chr13 28111679 28111829 -91633069 - FLAM_C SINE Alu -1 132 1 1213 224 11 14 chr13 28112368 28112654 -91632244 - AluJo SINE Alu -15 297 13 899 198 6 0 chr13 28112717 28112879 -91632019 - FRAM SINE Alu -3 163 1 232 158 18 35 chr13 28112881 28112938 -91631960 + MIR SINE MIR 201 256 -6 2136 104 3 0 chr13 28112954 28113262 -91631636 + AluSc SINE Alu 1 309 0 225 329 35 12 chr13 28113431 28113516 -91631382 + MIR SINE MIR 31 117 -145 183 184 0 0 chr13 28113583 28113621 -91631277 + CT-rich Low_complexity Low_complexity 2 39 0 292 287 132 52 chr13 28114182 28114356 -91630542 + MIR SINE MIR 20 207 -55 2239 164 31 31 chr13 28114385 28114807 -91630091 - MSTB1 LTR MaLR -3 429 8 5713 171 61 30 chr13 28114820 28115291 -91629607 + L1MC2 LINE L1 4829 5284 -1060 1911 129 0 3 chr13 28115291 28115612 -91629286 + AluSq SINE Alu 1 320 0 5713 171 61 30 chr13 28115612 28116415 -91628483 + L1MC2 LINE L1 5284 6165 -179 2105 113 7 0 chr13 28116415 28116715 -91628183 + AluSq SINE Alu 1 302 -11 5713 171 61 30 chr13 28116715 28116890 -91628008 + L1MC2 LINE L1 6165 6333 -11 586 321 106 17 chr13 28117022 28117259 -91627639 + MIR SINE MIR 4 261 -1 250 250 29 0 chr13 28117932 28118000 -91626898 + MLT1K LTR MaLR 519 588 0 1911 208 77 64 chr13 28118335 28118882 -91626016 - MLT2B3 LTR ERVL 0 554 1 452 311 48 48 chr13 28118890 28119022 -91625876 + L1ME4a LINE L1 5652 5783 -338 2971 185 43 2 chr13 28119022 28119557 -91625341 - MER41D LTR ERV1 0 557 1 452 311 48 48 chr13 28119557 28119733 -91625165 + L1ME4a LINE L1 5782 5960 -161 415 169 0 0 chr13 28120149 28120214 -91624684 + Tigger2 DNA MER2_type 3 67 -2651 2791 138 28 2 chr13 28120216 28120643 -91624255 + Tigger2 DNA MER2_type 2280 2717 -1 2058 186 5 25 chr13 28121039 28121437 -91623461 + MLT1B LTR MaLR 1 390 0 377 335 89 15 chr13 28121870 28122049 -91622849 + MIR SINE MIR 4 192 -70 222 228 18 18 chr13 28122084 28122141 -91622757 + CT-rich Low_complexity Low_complexity 5 61 0 378 288 131 19 chr13 28122773 28122933 -91621965 + MIR SINE MIR 85 262 0 825 184 173 0 chr13 28123225 28123410 -91621488 - MER20 DNA MER1_type -1 218 2 465 244 0 0 chr13 28123875 28123961 -91620937 - FRAM/FAM SINE Alu -91 85 1 835 261 5 0 chr13 28124740 28124928 -91619970 + MIR SINE MIR 71 259 -3 956 163 6 17 chr13 28124929 28125107 -91619791 + AluJo SINE Alu 125 300 -12 710 249 104 73 chr13 28125292 28125714 -91619184 + MLT1K LTR MaLR 154 588 0 281 280 114 45 chr13 28125783 28125915 -91618983 + L2 LINE L2 3132 3272 0 2221 106 0 0 chr13 28126071 28126374 -91618524 - AluSg SINE Alu -7 303 1 275 262 141 40 chr13 28126807 28126956 -91617942 - MLT1K LTR MaLR -81 507 344 259 313 16 31 chr13 28127017 28127145 -91617753 - MLT1K LTR MaLR -341 247 122 1952 122 3 7 chr13 28127803 28128099 -91616799 - AluSx SINE Alu 0 312 18 222 338 62 28 chr13 28129501 28129646 -91615252 - MIR SINE MIR -46 216 67 723 248 100 34 chr13 28129731 28130202 -91614696 + L1MDa LINE L1 1569 2070 -4470 3614 94 31 2 chr13 28130397 28130984 -91613914 + L1PB1 LINE L1 1540 2143 -4720 13807 181 14 3 chr13 28130990 28135186 -91609712 + L1PB1 LINE L1 2567 6866 -1 408 308 165 45 chr13 28135244 28135861 -91609037 - L1M4 LINE L1 -964 5182 4492 579 300 99 32 chr13 28135939 28136535 -91608363 + L1MEd LINE L1 325 960 -5159 4046 145 26 22 chr13 28136535 28136771 -91608127 + L1MB3 LINE L1 5450 5684 -499 3075 171 45 15 chr13 28136771 28137214 -91607684 - MER7C DNA MER2_type -2426 602 136 2188 91 3 3 chr13 28137214 28137501 -91607397 + AluSc SINE Alu 1 287 -22 3075 171 45 15 chr13 28137501 28137641 -91607257 - MER7C DNA MER2_type -2892 136 2 4046 145 26 22 chr13 28137641 28138128 -91606770 + L1MB3 LINE L1 5684 6176 -7 201 108 0 0 chr13 28138134 28138171 -91606727 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 242 242 16 16 chr13 28138625 28138687 -91606211 + L1MCa LINE L1 561 622 -5497 302 272 19 71 chr13 28138842 28139203 -91605695 + L1MCa LINE L1 820 1177 -5125 1400 164 10 103 chr13 28139203 28139514 -91605384 + AluJo SINE Alu 1 282 -30 302 272 19 71 chr13 28139514 28139743 -91605155 + L1MCa LINE L1 1177 1416 -4886 238 61 0 0 chr13 28139874 28139907 -91604991 + L1M1 LINE L1 2882 2914 -4651 715 206 0 0 chr13 28139914 28140045 -91604853 + FLAM_A SINE Alu 3 133 0 22398 177 17 38 chr13 28140082 28144463 -91600435 + L1PA11 LINE L1 1 5601 -2011 332 90 11 0 chr13 28144463 28144523 -91600375 + Alu SINE Alu 251 300 0 22398 177 17 38 chr13 28144523 28145808 -91599090 + L1PA11 LINE L1 5601 6911 -701 28919 112 14 62 chr13 28145856 28148402 -91596496 - L1PA7 LINE L1 -13 6141 3475 2180 96 0 46 chr13 28148402 28148725 -91596173 - AluY SINE Alu -3 308 1 28919 112 14 62 chr13 28148725 28152618 -91592280 - L1PA7 LINE L1 -2679 3475 20 4707 113 31 3 chr13 28152618 28153326 -91591572 + L1PA11 LINE L1 6883 7610 -2 361 249 0 60 chr13 28153339 28153524 -91591374 + L1MCa LINE L1 1473 1698 -4486 604 207 8 0 chr13 28153759 28153880 -91591018 - AluJb SINE Alu -19 293 172 1817 275 40 52 chr13 28153913 28154691 -91590207 + L1MCa LINE L1 2263 3049 -3080 2334 94 0 0 chr13 28154691 28154979 -91589919 - AluSc SINE Alu -21 288 1 1817 275 40 52 chr13 28154979 28155284 -91589614 + L1MCa LINE L1 3049 3333 -2796 1897 120 10 19 chr13 28155284 28155593 -91589305 - L1PA13 LINE L1 -7 6156 5851 1817 275 40 52 chr13 28155593 28155723 -91589175 + L1MCa LINE L1 3333 3463 -2666 313 250 0 0 chr13 28155844 28155924 -91588974 - MER116 DNA Mariner 0 80 1 1854 204 89 27 chr13 28156032 28156596 -91588302 - LTR48B LTR ERV1 -45 599 1 745 267 70 56 chr13 28156629 28157050 -91587848 + L1MCa LINE L1 3829 4257 -1872 41013 31 21 1 chr13 28157218 28163218 -91581680 - L1HS LINE L1 0 6155 32 389 216 10 0 chr13 28163224 28163321 -91581577 - L1M4 LINE L1 -3110 3036 2939 200 128 26 0 chr13 28163336 28163375 -91581523 + (TA)n Simple_repeat Simple_repeat 2 41 0 198 0 0 0 chr13 28163471 28163493 -91581405 + (TG)n Simple_repeat Simple_repeat 2 23 0 4402 220 115 5 chr13 28163494 28164946 -91579952 - L1MEc LINE L1 -1902 4313 2702 27 0 0 0 chr13 28164975 28165002 -91579896 + AT_rich Low_complexity Low_complexity 1 27 0 2131 130 3 0 chr13 28165002 28165294 -91579604 + AluSq SINE Alu 1 293 -20 554 70 97 5 chr13 28165295 28165714 -91579184 + (TA)n Simple_repeat Simple_repeat 1 457 0 2877 168 50 137 chr13 28165827 28166674 -91578224 + MER21A LTR ERV1 72 844 -87 586 229 0 29 chr13 28166719 28166894 -91578004 - L1MEc LINE L1 -3522 2693 2524 1209 227 33 55 chr13 28166898 28167259 -91577639 - MLT1A1 LTR MaLR -12 353 1 1540 191 7 28 chr13 28167331 28167613 -91577285 - AluJo SINE Alu -36 276 1 1076 299 64 35 chr13 28167622 28168550 -91576348 - L1MEc LINE L1 -3873 2523 1569 1137 121 24 0 chr13 28168575 28168741 -91576157 + AluSx SINE Alu 1 170 -142 308 133 0 0 chr13 28168741 28168786 -91576112 - Alu SINE Alu -257 45 1 599 289 39 39 chr13 28168786 28169066 -91575832 + L1ME4a LINE L1 5481 5760 -2048 327 230 53 86 chr13 28169323 28169475 -91575423 + L1ME4a LINE L1 5879 6025 -96 3565 136 11 0 chr13 28170000 28170521 -91574377 + MER1A DNA MER1_type 1 527 0 636 239 0 8 chr13 28171363 28171497 -91573401 + FLAM_A SINE Alu 1 133 0 1814 152 173 14 chr13 28171630 28171999 -91572899 - MSTA LTR MaLR 0 428 1 1323 198 57 25 chr13 28172059 28172342 -91572556 - AluSx SINE Alu -20 292 1 2056 123 0 11 chr13 28172483 28172845 -91572053 - AluSq SINE Alu 0 359 1 534 96 0 0 chr13 28172883 28172966 -91571932 - L1PB3 LINE L1 -3 6151 6069 4643 80 12 11 chr13 28173779 28174428 -91570470 - L1PA11 LINE L1 0 6174 5525 266 279 66 56 chr13 28175015 28175125 -91569773 + L1MC4a LINE L1 5612 5719 -2089 1996 150 10 0 chr13 28175125 28175596 -91569302 + AluSq SINE Alu 1 313 0 266 279 66 56 chr13 28175596 28175772 -91569126 + L1MC4a LINE L1 5719 5901 -1907 4880 44 2 2 chr13 28175772 28176363 -91568535 - LTR10C LTR ERV1 0 591 1 400 262 127 28 chr13 28176654 28177017 -91567881 + L1MC4a LINE L1 3540 3938 -2208 2715 209 28 16 chr13 28177471 28177764 -91567134 + MER82 DNA MER2_type 7 295 -358 5474 73 27 7 chr13 28177764 28178515 -91566383 + MER4E LTR ERV1 1 766 0 2715 209 28 16 chr13 28178515 28178859 -91566039 + MER82 DNA MER2_type 295 652 -1 953 284 118 34 chr13 28178929 28179305 -91565593 + L1MC4a LINE L1 3998 4341 -1805 2926 10 0 0 chr13 28179305 28179617 -91565281 + AluYb8 SINE Alu 1 312 -6 953 284 118 34 chr13 28179617 28180093 -91564805 + L1MC4a LINE L1 4341 4922 -1224 940 290 102 19 chr13 28180102 28180718 -91564180 + L1MC4a LINE L1 5215 5403 -743 34837 87 8 54 chr13 28180863 28187310 -91557588 + L1PA3 LINE L1 12 6155 0 7208 56 24 0 chr13 28187326 28188982 -91555916 + L1PA7 LINE L1 4480 6154 0 1055 117 32 0 chr13 28189085 28189239 -91555659 - L1MB2 LINE L1 -3 6168 6010 2232 99 0 0 chr13 28189244 28189527 -91555371 + AluSx SINE Alu 1 283 -29 210 128 0 0 chr13 28189529 28189568 -91555330 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1872 138 43 98 chr13 28189577 28189974 -91554924 - L1MB2 LINE L1 -153 6018 5644 1398 179 46 21 chr13 28189974 28190472 -91554426 - MER44D DNA MER2_type -1 604 14 380 145 16 0 chr13 28190473 28190535 -91554363 - L1MB2 LINE L1 -660 5640 5578 360 0 0 0 chr13 28190535 28190575 -91554323 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 2256 70 0 7 chr13 28190578 28190863 -91554035 - AluY SINE Alu -28 283 1 636 342 8 4 chr13 28191182 28191439 -91553459 + MLT1I LTR MaLR 97 354 -55 1756 147 27 14 chr13 28191443 28191579 -91553319 + AluJb SINE Alu 1 134 -178 2208 115 7 0 chr13 28191579 28191884 -91553014 + AluSx SINE Alu 1 307 -5 1756 147 27 14 chr13 28191884 28192039 -91552859 + AluJb SINE Alu 134 296 -16 290 197 43 86 chr13 28193362 28193479 -91551419 + MIR SINE MIR 45 156 -106 2305 91 0 3 chr13 28194165 28194461 -91550437 - AluSc SINE Alu -14 295 1 303 131 0 33 chr13 28196869 28196930 -91547968 - L1MB5 LINE L1 -1 6173 6115 2017 94 72 0 chr13 28196931 28197207 -91547691 + AluSq SINE Alu 1 296 -17 2292 163 20 13 chr13 28197749 28198142 -91546756 - MER61B LTR ERV1 -29 396 1 223 333 62 0 chr13 28198884 28198980 -91545918 - MER5A DNA MER1_type -50 139 38 337 255 167 23 chr13 28199037 28199223 -91545675 + MIR SINE MIR 32 248 -14 1966 164 56 26 chr13 28199233 28199611 -91545287 - MLT1B LTR MaLR -1 389 1 228 197 66 49 chr13 28200823 28200884 -91544014 - MIR3 SINE MIR -9 199 138 509 243 134 99 chr13 28200973 28201368 -91543530 + MLT1H LTR MaLR 125 533 -16 1237 224 85 54 chr13 28201421 28201867 -91543031 - L1MC4 LINE L1 -692 7350 6891 1154 229 29 7 chr13 28201882 28202161 -91542737 - L1M4 LINE L1 -2376 3770 3486 244 309 34 20 chr13 28202177 28202326 -91542572 - L1M4 LINE L1 -3793 2353 2203 240 254 16 16 chr13 28202543 28202606 -91542292 + L2 LINE L2 3248 3310 -3 1163 231 107 72 chr13 28202618 28203076 -91541822 - MLT1J LTR MaLR -1 510 37 1062 253 118 31 chr13 28203277 28203552 -91541346 - LTR33 LTR ERVL -2 519 187 981 196 12 6 chr13 28203552 28203725 -91541173 - MER45A DNA AcHobo 0 178 5 1062 253 118 31 chr13 28203725 28203907 -91540991 - LTR33 LTR ERVL -334 187 22 510 268 87 0 chr13 28203927 28204065 -91540833 - L2 LINE L2 -556 2758 2609 312 261 90 77 chr13 28204086 28204320 -91540578 + MER112 DNA MER1_type 23 259 -1 320 182 13 52 chr13 28204330 28204407 -91540491 + MLT1D LTR MaLR 6 79 -426 1905 206 22 31 chr13 28204439 28204890 -91540008 + MLT1D LTR MaLR 58 504 -1 661 271 107 64 chr13 28205567 28205716 -91539182 + L1M2 LINE L1 4346 4487 -1709 1443 208 10 20 chr13 28205716 28206014 -91538884 + AluJo SINE Alu 1 295 -17 661 271 107 64 chr13 28206014 28206895 -91538003 + L1M2 LINE L1 4487 5453 -743 872 287 84 6 chr13 28206984 28207305 -91537593 + L1ME3 LINE L1 5484 5829 -333 255 61 0 0 chr13 28207326 28207359 -91537539 + (T)n Simple_repeat Simple_repeat 1 33 0 1703 126 4 0 chr13 28207369 28207599 -91537299 - AluSx SINE Alu -81 231 1 302 268 197 8 chr13 28208218 28208258 -91536640 - MER5A DNA MER1_type -14 175 144 1697 168 40 16 chr13 28208258 28208561 -91536337 + AluJo SINE Alu 3 312 0 302 268 197 8 chr13 28208561 28208647 -91536251 - MER5A DNA MER1_type -45 144 25 200 35 35 0 chr13 28209192 28209221 -91535677 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 236 307 0 20 chr13 28209384 28209485 -91535413 + MIR SINE MIR 44 142 -120 459 217 0 0 chr13 28209485 28209577 -91535321 + MER53 DNA DNA 95 186 -3 462 273 30 0 chr13 28209578 28209710 -91535188 + MIR SINE MIR 108 243 -19 225 302 98 78 chr13 28209721 28209863 -91535035 + L2 LINE L2 2554 2705 -609 2151 116 10 3 chr13 28209863 28210165 -91534733 + AluSx SINE Alu 1 304 -8 225 302 98 78 chr13 28210165 28210267 -91534631 + L2 LINE L2 2705 2803 -511 947 145 0 0 chr13 28210304 28210442 -91534456 - FRAM SINE Alu -21 155 18 269 296 96 0 chr13 28211481 28211596 -91533302 + L2 LINE L2 3137 3262 -10 326 204 133 0 chr13 28211862 28211960 -91532938 + L1ME LINE L1 5707 5817 -304 210 200 43 14 chr13 28212085 28212155 -91532743 + T-rich Low_complexity Low_complexity 2 73 0 902 170 0 0 chr13 28212160 28212319 -91532579 + L1MD3 LINE L1 7831 7989 -6 47 19 0 0 chr13 28212319 28212373 -91532525 + AT_rich Low_complexity Low_complexity 1 54 0 646 271 107 64 chr13 28212761 28212910 -91531988 + L1M2 LINE L1 4346 4487 -1709 1443 208 10 20 chr13 28212910 28213208 -91531690 + AluJo SINE Alu 1 295 -17 646 271 107 64 chr13 28213208 28214088 -91530810 + L1M2 LINE L1 4487 5453 -743 872 287 84 6 chr13 28214177 28214498 -91530400 + L1ME3 LINE L1 5484 5829 -333 264 59 0 0 chr13 28214519 28214553 -91530345 + (T)n Simple_repeat Simple_repeat 1 34 0 1641 135 4 0 chr13 28214562 28214792 -91530106 - AluSx SINE Alu -81 231 1 302 268 197 8 chr13 28215412 28215452 -91529446 - MER5A DNA MER1_type -14 175 144 1697 168 40 16 chr13 28215452 28215755 -91529143 + AluJo SINE Alu 3 312 0 302 268 197 8 chr13 28215755 28215841 -91529057 - MER5A DNA MER1_type -45 144 25 200 35 35 0 chr13 28216386 28216415 -91528483 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 236 307 0 20 chr13 28216578 28216679 -91528219 + MIR SINE MIR 44 142 -120 459 217 0 0 chr13 28216679 28216771 -91528127 + MER53 DNA DNA 95 186 -3 462 273 30 0 chr13 28216772 28216904 -91527994 + MIR SINE MIR 108 243 -19 2245 97 3 3 chr13 28217057 28217347 -91527551 + AluSx SINE Alu 1 290 -22 1177 171 222 10 chr13 28217347 28217407 -91527491 - L1MD2 LINE L1 -150 6209 6163 216 97 0 0 chr13 28217407 28217438 -91527460 + (TG)n Simple_repeat Simple_repeat 2 32 0 1177 171 222 10 chr13 28217438 28217670 -91527228 - L1MD2 LINE L1 -196 6163 5855 22 0 0 0 chr13 28218273 28218295 -91526603 + AT_rich Low_complexity Low_complexity 1 22 0 251 242 0 48 chr13 28219277 28219339 -91525559 - L2 LINE L2 -6 3307 3249 24 0 0 0 chr13 28219745 28219769 -91525129 + AT_rich Low_complexity Low_complexity 1 24 0 183 139 0 0 chr13 28219969 28220005 -91524893 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 936 161 6 36 chr13 28220239 28220407 -91524491 - FRAM SINE Alu -9 167 5 93 26 0 0 chr13 28220507 28220621 -91524277 + AT_rich Low_complexity Low_complexity 1 114 0 2465 173 32 0 chr13 28220623 28221062 -91523836 - L1MD3 LINE L1 0 7995 7543 1150 224 37 39 chr13 28221119 28221602 -91523296 + MLT1F LTR MaLR 10 542 0 403 277 74 43 chr13 28221738 28221969 -91522929 - L1ME4a LINE L1 -194 5927 5690 347 331 60 7 chr13 28221975 28222126 -91522772 + MIR SINE MIR 1 159 -103 1617 135 104 3 chr13 28222146 28222435 -91522463 - L1MB3 LINE L1 -3 6180 5863 256 111 12 49 chr13 28222542 28222623 -91522275 + (TA)n Simple_repeat Simple_repeat 1 78 0 2079 231 10 0 chr13 28222640 28223052 -91521846 + L1PBa LINE L1 1218 1633 -5230 744 198 8 8 chr13 28223023 28223149 -91521749 + L1PB3 LINE L1 1 126 -6078 * 9192 162 40 14 chr13 28223142 28225397 -91519501 + L1PB3 LINE L1 3527 5724 -487 384 119 0 0 chr13 28225397 28225456 -91519442 + (TA)n Simple_repeat Simple_repeat 2 60 0 9192 162 40 14 chr13 28225456 28225482 -91519416 + L1PB3 LINE L1 5724 5748 -463 2359 98 3 0 chr13 28225482 28225788 -91519110 - AluSq SINE Alu -6 307 1 9192 162 40 14 chr13 28225788 28226114 -91518784 + L1PB3 LINE L1 5748 6207 -4 342 233 21 98 chr13 28226129 28226322 -91518576 + L1ME4a LINE L1 5152 5329 -817 489 330 80 30 chr13 28227297 28227658 -91517240 - L2 LINE L2 -87 3226 2848 269 311 226 21 chr13 28228296 28228486 -91516412 - MIR SINE MIR -2 260 32 1651 208 81 40 chr13 28229177 28229624 -91515274 + MLT1C LTR MaLR 1 465 -2 257 157 22 45 chr13 28230806 28230895 -91514003 + GA-rich Low_complexity Low_complexity 2 88 0 925 228 29 37 chr13 28230901 28231173 -91513725 - MSTB1 LTR MaLR -155 277 8 5753 172 61 30 chr13 28231186 28231657 -91513241 + L1MC2 LINE L1 4829 5284 -1060 2031 129 0 3 chr13 28231657 28231978 -91512920 + AluSq SINE Alu 1 320 0 5753 172 61 30 chr13 28231978 28232781 -91512117 + L1MC2 LINE L1 5284 6165 -179 2230 113 7 0 chr13 28232781 28233081 -91511817 + AluSq SINE Alu 1 302 -11 5753 172 61 30 chr13 28233081 28233256 -91511642 + L1MC2 LINE L1 6165 6333 -11 491 325 106 17 chr13 28233388 28233625 -91511273 + MIR SINE MIR 4 261 -1 248 250 29 0 chr13 28234298 28234366 -91510532 + MLT1K LTR MaLR 519 588 0 1927 207 77 64 chr13 28234701 28235248 -91509650 - MLT2B3 LTR ERVL 0 554 1 472 309 64 44 chr13 28235256 28235388 -91509510 + L1ME4a LINE L1 5652 5780 -341 2979 185 43 2 chr13 28235388 28235923 -91508975 - MER41D LTR ERV1 0 557 1 472 309 64 44 chr13 28235923 28236088 -91508810 + L1ME4a LINE L1 5780 5955 -166 417 169 0 0 chr13 28236515 28236580 -91508318 + Tigger2 DNA MER2_type 3 67 -2651 2790 138 28 2 chr13 28236582 28237009 -91507889 + Tigger2 DNA MER2_type 2280 2717 -1 2017 184 8 23 chr13 28237405 28237801 -91507097 + MLT1B LTR MaLR 1 390 0 14656 125 4 29 chr13 28238020 28240447 -91504451 - L1P LINE L1 -2848 3298 932 225 318 91 11 chr13 28240714 28240889 -91504009 + MIR SINE MIR 20 206 -56 637 146 16 24 chr13 28242121 28242244 -91502654 + L1MB3 LINE L1 6061 6182 -1 2779 187 64 3 chr13 28242269 28242847 -91502051 + L1MB7 LINE L1 5572 6184 0 260 268 36 6 chr13 28243307 28243475 -91501423 + G-rich Low_complexity Low_complexity 2 174 0 900 174 47 0 chr13 28244797 28244969 -91499929 + MER20 DNA MER1_type 40 219 0 23 0 0 0 chr13 28246149 28246172 -91498726 + AT_rich Low_complexity Low_complexity 1 23 0 280 313 113 5 chr13 28246198 28246393 -91498505 - MIR SINE MIR -44 218 3 376 139 60 18 chr13 28247799 28248027 -91496871 + (TA)n Simple_repeat Simple_repeat 1 237 0 66 73 0 0 chr13 28248055 28248191 -91496707 + AT_rich Low_complexity Low_complexity 1 136 0 1728 177 17 10 chr13 28249647 28249946 -91494952 + AluJb SINE Alu 1 301 -11 1869 232 39 43 chr13 28249946 28250433 -91494465 - MLT1J LTR MaLR -18 493 9 257 262 61 33 chr13 28250969 28251111 -91493787 + LTR16A1 LTR ERVL 329 457 0 234 0 71 24 chr13 28251327 28251369 -91493529 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2273 108 3 19 chr13 28251406 28251722 -91493176 - AluSq SINE Alu -2 311 1 2007 123 0 17 chr13 28252344 28252646 -91492252 + MER46B DNA MER2_type 2 173 -63 396 0 0 0 chr13 28252646 28252690 -91492208 + (TA)n Simple_repeat Simple_repeat 2 45 0 252 111 0 0 chr13 28253870 28253915 -91490983 + (TG)n Simple_repeat Simple_repeat 1 45 0 369 217 12 6 chr13 28253941 28254107 -91490791 + (TG)n Simple_repeat Simple_repeat 2 168 0 183 100 0 0 chr13 28254149 28254179 -91490719 + (TG)n Simple_repeat Simple_repeat 2 31 0 220 282 51 0 chr13 28254704 28254782 -91490116 + MIR3 SINE MIR 124 205 -3 327 127 0 0 chr13 28255278 28255341 -91489557 + (TC)n Simple_repeat Simple_repeat 2 64 0 209 250 13 26 chr13 28255926 28256002 -91488896 - L2 LINE L2 -30 3283 3209 1855 148 3 10 chr13 28257133 28257443 -91487455 - L1MB7 LINE L1 -1 6183 5876 574 176 20 0 chr13 28257483 28257585 -91487313 + MER94 DNA DNA 2 105 -29 5295 138 33 16 chr13 28259347 28260235 -91484663 - MER4D LTR ERV1 0 903 1 2230 97 7 3 chr13 28260624 28260914 -91483984 + AluSx SINE Alu 1 291 -21 199 319 153 0 chr13 28260937 28261009 -91483889 - MER5A DNA MER1_type -70 119 37 316 241 277 0 chr13 28261788 28261925 -91482973 + MER5A DNA MER1_type 15 189 0 455 238 85 14 chr13 28263621 28263762 -91481136 + MIR SINE MIR 43 192 -62 28 50 0 17 chr13 28265679 28265700 -91479198 + AT_rich Low_complexity Low_complexity 1 21 -38 2083 113 0 10 chr13 28265700 28265992 -91478906 + AluSp SINE Alu 1 289 -24 28 50 0 17 chr13 28265992 28266030 -91478868 + AT_rich Low_complexity Low_complexity 21 59 0 797 171 0 0 chr13 28266746 28266886 -91478012 - L1MB7 LINE L1 -19 6165 6026 1967 192 109 6 chr13 28267240 28267708 -91477190 - L1MD1 LINE L1 -9 6233 5718 401 323 15 0 chr13 28269200 28269333 -91475565 + MIR SINE MIR 13 147 -115 1336 225 208 47 chr13 28271322 28271781 -91473117 + MLT1L LTR MaLR 1 557 -58 1014 167 84 47 chr13 28271781 28271996 -91472902 + MER58A DNA MER1_type 1 223 -1 1336 225 208 47 chr13 28271996 28272064 -91472834 + MLT1L LTR MaLR 557 613 -2 975 248 156 31 chr13 28272184 28272687 -91472211 - MLT1G1 LTR MaLR -23 544 5 2155 105 3 45 chr13 28272690 28273004 -91471894 + AluSx SINE Alu 3 303 -9 229 282 26 26 chr13 28273264 28273342 -91471556 - MLT1G1-int LTR MaLR -262 1109 1032 2795 103 30 9 chr13 28273792 28274229 -91470669 - L1PB2 LINE L1 -1 6150 5705 272 218 46 46 chr13 28274641 28274728 -91470170 - MLT1G1-int LTR MaLR -1648 87 1 273 167 73 177 chr13 28274728 28274765 -91470133 - MLT1G1 LTR MaLR 0 542 503 2090 141 0 10 chr13 28274765 28275064 -91469834 + AluSx SINE Alu 1 296 -16 273 167 73 177 chr13 28275064 28275218 -91469680 - MLT1G1 LTR MaLR -39 503 371 274 332 25 39 chr13 28275755 28276038 -91468860 + L2 LINE L2 1955 2233 -1081 1296 275 63 1 chr13 28276045 28276493 -91468405 - MLT1J LTR MaLR -6 505 1 416 270 220 5 chr13 28276493 28276693 -91468205 + L2 LINE L2 2230 2472 -842 305 154 152 74 chr13 28276976 28277099 -91467799 + MLT1I LTR MaLR 275 549 0 336 335 32 27 chr13 28277100 28277321 -91467577 + L2 LINE L2 2477 2698 -616 374 227 34 0 chr13 28279336 28279424 -91465474 - L2 LINE L2 0 3313 3223 1107 296 174 43 chr13 28280640 28281999 -91462899 + L2 LINE L2 1754 3307 -6 2276 119 3 0 chr13 28282176 28282487 -91462411 - AluSx SINE Alu 0 312 1 33 43 0 0 chr13 28283018 28283065 -91461833 + AT_rich Low_complexity Low_complexity 1 47 0 1776 176 0 10 chr13 28283234 28283536 -91461362 - AluJb SINE Alu -13 299 1 449 321 29 7 chr13 28283930 28284108 -91460790 - MIR SINE MIR -66 142 3 311 267 23 0 chr13 28284505 28284591 -91460307 + (CTA)n Simple_repeat Simple_repeat 2 89 0 2465 50 3 0 chr13 28284802 28285103 -91459795 - AluY SINE Alu -9 302 1 2095 99 0 36 chr13 28285836 28286172 -91458726 + AluSx SINE Alu 1 325 0 1453 154 65 91 chr13 28286840 28287087 -91457811 - MLT1B LTR MaLR -16 374 139 2331 102 0 3 chr13 28287087 28287390 -91457508 + AluSc SINE Alu 1 302 -7 1453 154 65 91 chr13 28287390 28287526 -91457372 - MLT1B LTR MaLR -251 139 1 2386 151 32 28 chr13 28287833 28288018 -91456880 + MLT1C LTR MaLR 1 184 -283 2458 39 0 86 chr13 28288018 28288355 -91456543 + AluY SINE Alu 2 309 -2 2386 151 32 28 chr13 28288355 28288634 -91456264 + MLT1C LTR MaLR 184 467 0 2038 129 0 0 chr13 28288661 28288939 -91455959 + AluSx SINE Alu 7 284 -28 315 0 0 0 chr13 28290032 28290067 -91454831 + (TG)n Simple_repeat Simple_repeat 2 36 0 1485 181 67 0 chr13 28290275 28290529 -91454369 + AluJo SINE Alu 25 295 -17 2255 81 0 40 chr13 28290551 28290874 -91454024 + AluY SINE Alu 1 310 -1 2188 112 13 3 chr13 28290887 28291190 -91453708 + AluSq SINE Alu 1 306 -7 270 357 105 12 chr13 28291982 28292153 -91452745 - MIR3 SINE MIR -7 201 15 2392 101 3 0 chr13 28292536 28292844 -91452054 - AluSq SINE Alu -4 309 1 261 366 71 0 chr13 28293547 28293659 -91451239 + L2 LINE L2 3151 3270 -2 1540 235 123 64 chr13 28294267 28294733 -91450165 + HAL1b LINE L1 94 531 -817 1697 129 4 0 chr13 28294733 28294974 -91449924 + AluSg/x SINE Alu 68 309 -1 1540 235 123 64 chr13 28294974 28295159 -91449739 + HAL1b LINE L1 531 704 -644 2378 94 0 0 chr13 28295159 28295457 -91449441 - AluSq SINE Alu -14 299 2 1540 235 123 64 chr13 28295457 28295753 -91449145 + HAL1b LINE L1 704 1098 -250 880 118 0 22 chr13 28295880 28296016 -91448882 + FLAM_C SINE Alu 1 133 0 24 32 0 0 chr13 28296090 28296121 -91448777 + AT_rich Low_complexity Low_complexity 1 31 0 1912 156 29 133 chr13 28296498 28296548 -91448350 - L1MB3 LINE L1 0 6183 6129 2033 133 3 7 chr13 28296548 28296841 -91448057 - AluJo SINE Alu -20 292 1 1912 156 29 133 chr13 28296841 28297347 -91447551 - L1MB3 LINE L1 -54 6129 5685 343 325 44 109 chr13 28297348 28297622 -91447276 + L2 LINE L2 2995 3250 -22 1390 152 108 54 chr13 28297711 28297988 -91446910 + AluJb SINE Alu 1 292 -20 1163 252 130 21 chr13 28298141 28298610 -91446288 - MLT2B1 LTR ERVL 0 520 1 1520 102 3 115 chr13 28298685 28299060 -91445838 - MER4A LTR ERV1 0 664 261 521 165 21 10 chr13 28299060 28299157 -91445741 - MER4A LTR ERV1 -566 98 1 2322 112 0 6 chr13 28299314 28299627 -91445271 + AluSx SINE Alu 1 311 -1 1037 286 164 37 chr13 28300118 28300684 -91444214 - L3 LINE CR1 -17 1560 923 1110 230 66 77 chr13 28300848 28301385 -91443513 + L1MEc LINE L1 1732 2273 -4123 2081 124 24 0 chr13 28301385 28301676 -91443222 + AluSx SINE Alu 1 298 -14 1110 230 66 77 chr13 28301676 28301857 -91443041 + L1MEc LINE L1 2273 2444 -3952 2627 176 75 44 chr13 28301857 28302562 -91442336 - LTR8A LTR ERV1 0 727 1 1110 230 66 77 chr13 28302562 28302598 -91442300 + L1MEc LINE L1 2444 2479 -3917 2231 190 6 46 chr13 28302612 28303090 -91441808 + MER66B LTR ERV1 28 486 0 1232 243 54 40 chr13 28303111 28303133 -91441765 + L1MEc LINE L1 2470 2490 -3725 2459 79 3 0 chr13 28303133 28303436 -91441462 + AluSp SINE Alu 1 304 -9 1232 243 54 40 chr13 28303436 28303857 -91441041 + L1MEc LINE L1 2490 2919 -3296 2238 51 0 44 chr13 28303862 28304156 -91440742 + AluY SINE Alu 1 281 -30 457 252 103 70 chr13 28304197 28304642 -91440256 + L1MC4 LINE L1 7576 8035 -7 283 237 0 0 chr13 28304813 28304872 -91440026 + L2 LINE L2 3197 3255 -17 1643 262 50 45 chr13 28304922 28304962 -91439936 - L1ME3 LINE L1 -20 6142 6104 1934 142 139 13 chr13 28304962 28305301 -91439597 + MSTA LTR MaLR 1 394 -34 2383 99 0 0 chr13 28305301 28305603 -91439295 - AluSx SINE Alu -10 302 1 1934 142 139 13 chr13 28305603 28305643 -91439255 + MSTA LTR MaLR 394 428 0 1643 262 50 45 chr13 28305643 28306315 -91438583 - L1ME3 LINE L1 -58 6104 5426 390 244 144 35 chr13 28306317 28306636 -91438262 + L1ME4a LINE L1 5767 6120 -1 216 139 28 7 chr13 28306705 28306795 -91438103 + MIR SINE MIR 108 250 -12 704 239 56 36 chr13 28306827 28307078 -91437820 - L2 LINE L2 -2920 394 139 348 186 34 127 chr13 28307355 28307473 -91437425 - MER5B DNA MER1_type -68 110 4 570 272 90 34 chr13 28307907 28307959 -91436939 - MLT1L LTR MaLR -90 525 477 5681 96 24 32 chr13 28307959 28308876 -91436022 + L1PA13 LINE L1 4572 5471 -692 1600 160 44 0 chr13 28308876 28309151 -91435747 + AluJb SINE Alu 1 287 -25 5681 96 24 32 chr13 28309151 28309837 -91435061 + L1PA13 LINE L1 5471 6161 -2 570 272 90 34 chr13 28309837 28310107 -91434791 - MLT1L LTR MaLR -138 477 185 22 0 0 0 chr13 28311034 28311056 -91433842 + AT_rich Low_complexity Low_complexity 1 22 0 272 275 133 8 chr13 28311060 28311180 -91433718 - MIR SINE MIR -87 175 41 616 258 51 32 chr13 28317068 28317285 -91427613 + MIR SINE MIR 29 249 -13 234 267 182 79 chr13 28317600 28317765 -91427133 - MER5A DNA MER1_type -1 188 7 588 296 61 53 chr13 28318057 28318321 -91426577 - L3 LINE CR1 -99 1478 1213 409 254 104 8 chr13 28319163 28319297 -91425601 + L2 LINE L2 3167 3313 0 1027 246 31 31 chr13 28319537 28319793 -91425105 - MIR SINE MIR 0 262 7 25 51 0 0 chr13 28322138 28322177 -91422721 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr13 28323451 28323472 -91421426 + AT_rich Low_complexity Low_complexity 1 21 0 2098 126 0 3 chr13 28323754 28324047 -91420851 - AluSx SINE Alu -20 292 1 2005 170 0 0 chr13 28324380 28324692 -91420206 - AluJo SINE Alu 0 312 1 2484 91 0 0 chr13 28324720 28325029 -91419869 + AluSc SINE Alu 1 309 0 21 36 0 0 chr13 28325812 28325840 -91419058 + AT_rich Low_complexity Low_complexity 1 28 0 2187 114 0 3 chr13 28325907 28326197 -91418701 - AluSx SINE Alu -23 289 1 28 0 0 0 chr13 28326469 28326497 -91418401 + AT_rich Low_complexity Low_complexity 1 28 0 388 259 19 37 chr13 28327724 28327886 -91417012 + L1MC4 LINE L1 5743 5901 -1907 400 213 173 20 chr13 28327914 28328064 -91416834 + MLT1B LTR MaLR 1 173 -217 319 237 0 13 chr13 28328182 28328205 -91416693 + L1MC4 LINE L1 6624 6646 -1396 2584 50 0 0 chr13 28328205 28328503 -91416395 + AluY SINE Alu 3 300 -11 319 237 0 13 chr13 28328503 28328555 -91416343 + L1MC4 LINE L1 6646 6698 -1344 2118 105 0 3 chr13 28329028 28329334 -91415564 + AluSq SINE Alu 1 305 0 300 212 235 15 chr13 28329412 28329544 -91415354 + L1ME4a LINE L1 5950 6110 -11 823 133 35 14 chr13 28329694 28329837 -91415061 + L1MC1 LINE L1 6177 6322 -11 1701 159 3 59 chr13 28329838 28330159 -91414739 + AluJo SINE Alu 1 303 -9 183 139 0 0 chr13 28330393 28330429 -91414469 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr13 28330629 28330653 -91414245 + AT_rich Low_complexity Low_complexity 1 24 0 248 242 0 48 chr13 28331059 28331121 -91413777 + L2 LINE L2 3249 3307 -6 22 0 0 0 chr13 28332103 28332125 -91412773 + AT_rich Low_complexity Low_complexity 1 22 0 1723 168 152 39 chr13 28332728 28332960 -91411938 + L1MD2 LINE L1 5855 6059 -300 234 91 0 0 chr13 28332960 28332993 -91411905 + (CA)n Simple_repeat Simple_repeat 2 34 0 1723 168 152 39 chr13 28332993 28333053 -91411845 + L1MD2 LINE L1 6059 6111 -248 2252 103 0 0 chr13 28333053 28333343 -91411555 - AluSx SINE Alu -22 290 1 1723 168 152 39 chr13 28333343 28333483 -91411415 + L1MD2 LINE L1 6111 6337 -22 22 35 0 0 chr13 28333636 28333665 -91411233 + AT_rich Low_complexity Low_complexity 1 29 0 357 287 116 31 chr13 28334308 28334534 -91410364 + L2 LINE L2 2755 3002 -270 973 173 9 37 chr13 28336939 28336974 -91407924 + L1MB3 LINE L1 5975 6009 -174 411 21 0 0 chr13 28336974 28337022 -91407876 + (TG)n Simple_repeat Simple_repeat 2 49 0 2161 109 3 0 chr13 28337022 28337305 -91407593 - AluSp SINE Alu -28 285 2 973 173 9 37 chr13 28337305 28337482 -91407416 + L1MB3 LINE L1 6007 6182 -1 265 335 93 14 chr13 28338420 28338635 -91406263 + L2 LINE L2 1792 2023 -1291 338 270 36 9 chr13 28338705 28338816 -91406082 - MER103 DNA DNA -9 157 44 452 267 124 0 chr13 28339418 28339579 -91405319 - MIR SINE MIR -4 258 78 505 218 57 8 chr13 28339808 28339932 -91404966 - MER94 DNA DNA -4 130 1 180 0 0 0 chr13 28340518 28340538 -91404360 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 26 30 0 0 chr13 28340831 28340864 -91404034 + AT_rich Low_complexity Low_complexity 1 33 0 2034 146 3 7 chr13 28341952 28342253 -91402645 - AluSx SINE Alu -12 300 1 195 42 0 0 chr13 28342459 28342483 -91402415 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr13 28343466 28343495 -91401403 + AT_rich Low_complexity Low_complexity 1 29 0 243 243 0 39 chr13 28343564 28343667 -91401231 + (TAA)n Simple_repeat Simple_repeat 1 99 0 258 237 51 0 chr13 28343687 28343746 -91401152 - MIR SINE MIR -34 228 167 1360 202 0 45 chr13 28343753 28344040 -91400858 + AluJo SINE Alu 9 282 -30 35 63 0 0 chr13 28344340 28344403 -91400495 + AT_rich Low_complexity Low_complexity 1 63 0 683 154 0 8 chr13 28344734 28344857 -91400041 + L1ME4a LINE L1 5369 5490 -688 28 0 0 0 chr13 28345159 28345187 -91399711 + AT_rich Low_complexity Low_complexity 1 28 0 2141 105 3 10 chr13 28346138 28346433 -91398465 - AluSx SINE Alu -19 293 1 369 250 33 11 chr13 28347014 28347106 -91397792 - MIR SINE MIR -81 181 88 964 146 4 153 chr13 28347160 28347414 -91397484 - MER20 DNA MER1_type -1 218 3 264 170 198 28 chr13 28347661 28347767 -91397131 + MARNA DNA Mariner 21 144 -442 399 285 134 36 chr13 28347879 28348132 -91396766 + MARNA DNA Mariner 210 487 -99 274 284 18 18 chr13 28348513 28348622 -91396276 + L1ME4a LINE L1 5560 5668 -453 6959 236 53 44 chr13 28348878 28352879 -91392019 + L1PA12 LINE L1 856 4900 -2684 259 290 43 0 chr13 28352873 28352966 -91391932 + L1ME4a LINE L1 5999 6095 -26 * 252 248 2 83 chr13 28353486 28353595 -91391303 - MER5B DNA MER1_type -26 163 59 2017 143 3 3 chr13 28354002 28354309 -91390589 + AluSx SINE Alu 1 307 -5 297 311 46 26 chr13 28354510 28354661 -91390237 + MER117 DNA MER1_type 7 160 -37 402 283 17 68 chr13 28355363 28355540 -91389358 + MIR3 SINE MIR 32 199 -9 235 364 0 11 chr13 28356560 28356648 -91388250 + MIR SINE MIR 43 129 -133 1404 319 151 33 chr13 28357143 28357821 -91387077 - L2 LINE L2 -2 3270 2674 888 186 77 97 chr13 28357821 28358171 -91386727 + MER2 DNA MER2_type 2 344 0 1404 319 151 33 chr13 28358171 28358709 -91386189 - L2 LINE L2 -598 2674 1895 494 351 14 28 chr13 28359164 28359449 -91385449 + MLT1J LTR MaLR 231 511 0 252 293 37 0 chr13 28359536 28359618 -91385280 + MLT1J LTR MaLR 119 203 -308 521 218 103 111 chr13 28359730 28360001 -91384897 + MLT1L LTR MaLR 347 615 0 257 310 134 14 chr13 28360502 28360644 -91384254 + MER5B DNA MER1_type 8 166 -12 355 239 0 0 chr13 28360663 28360675 -91384223 + MER3 DNA MER1_type 37 48 -161 275 196 22 87 chr13 28360675 28360767 -91384131 - MER3 DNA MER1_type -1 208 123 * 1590 145 110 3 chr13 28360758 28361103 -91383795 + MER3 DNA MER1_type 2242 2623 0 270 263 79 13 chr13 28361585 28361661 -91383237 - MER2 DNA MER2_type -1 344 264 886 157 91 30 chr13 28361694 28361892 -91383006 - MER2 DNA MER2_type -135 210 1 33 73 0 0 chr13 28362523 28362591 -91382307 + AT_rich Low_complexity Low_complexity 1 68 0 181 290 69 99 chr13 28362653 28362784 -91382114 - L2 LINE L2 -6 3266 3140 25 31 0 0 chr13 28364303 28364335 -91380563 + AT_rich Low_complexity Low_complexity 1 32 0 1910 170 13 0 chr13 28364584 28364890 -91380008 + AluJo SINE Alu 1 310 -2 893 177 74 37 chr13 28367027 28367298 -91377600 + L1MC5 LINE L1 7633 7913 -48 2312 95 3 7 chr13 28368277 28368583 -91376315 - AluSx SINE Alu -7 305 1 809 231 113 5 chr13 28369039 28369242 -91375656 + MIR SINE MIR 26 250 -12 743 200 0 0 chr13 28370682 28370812 -91374086 - FRAM SINE Alu -49 127 1 187 51 0 51 chr13 28371022 28371061 -91373837 + (CA)n Simple_repeat Simple_repeat 2 38 0 2290 73 10 3 chr13 28371246 28371549 -91373349 - AluSp SINE Alu -8 305 1 41844 56 7 3 chr13 28371823 28377945 -91366953 - L1PA5 LINE L1 -4 6150 1 26 30 0 0 chr13 28377950 28377983 -91366915 + AT_rich Low_complexity Low_complexity 1 33 0 2516 60 7 0 chr13 28379416 28379718 -91365180 + AluSp SINE Alu 2 305 -8 634 231 67 31 chr13 28379993 28380188 -91364710 - MER3 DNA MER1_type -1 208 7 276 259 118 67 chr13 28380200 28380335 -91364563 - L2 LINE L2 -8 3305 3164 1592 61 0 0 chr13 28380437 28380634 -91364264 - AluY SINE Alu -9 302 106 1222 290 19 16 chr13 28381648 28382014 -91362884 + L2 LINE L2 2947 3313 0 2157 80 21 10 chr13 28382020 28382308 -91362590 + AluSg SINE Alu 8 298 -12 24 32 0 0 chr13 28382475 28382506 -91362392 + AT_rich Low_complexity Low_complexity 1 31 0 21 100 0 0 chr13 28382703 28382773 -91362125 + AT_rich Low_complexity Low_complexity 1 70 0 394 266 68 79 chr13 28382920 28383097 -91361801 + MIR SINE MIR 69 243 -19 370 305 188 13 chr13 28383101 28383183 -91361715 - L2 LINE L2 0 3313 3247 858 36 0 0 chr13 28383183 28383293 -91361605 + (TA)n Simple_repeat Simple_repeat 2 111 0 370 305 188 13 chr13 28383293 28383449 -91361449 - L2 LINE L2 -66 3247 3033 2241 92 0 64 chr13 28383561 28383889 -91361009 + AluSc SINE Alu 1 307 -2 686 321 194 28 chr13 28383899 28384372 -91360526 - L2 LINE L2 -362 2952 2401 330 26 0 0 chr13 28384451 28384490 -91360408 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 339 303 90 90 chr13 28384546 28384968 -91359930 + L1ME LINE L1 37 458 -5612 501 241 161 54 chr13 28385271 28385698 -91359200 + L1ME LINE L1 488 1134 -4946 1698 138 0 0 chr13 28385771 28386010 -91358888 + AluSx SINE Alu 17 255 -57 270 0 0 0 chr13 28386023 28386053 -91358845 + (TAA)n Simple_repeat Simple_repeat 2 31 0 445 246 163 49 chr13 28386136 28387235 -91357663 + L1ME LINE L1 1249 2498 -3582 698 243 181 74 chr13 28387340 28387613 -91357285 + L1ME LINE L1 2668 2911 -3169 608 198 0 32 chr13 28387613 28387739 -91357159 + FLAM_A SINE Alu 1 122 -11 698 243 181 74 chr13 28387739 28387753 -91357145 + L1ME LINE L1 2911 2922 -3158 2445 69 0 0 chr13 28387753 28388057 -91356841 + AluY SINE Alu 1 304 -7 698 243 181 74 chr13 28388057 28388687 -91356211 + L1ME LINE L1 2922 3684 -2396 338 282 117 6 chr13 28388806 28388969 -91355929 + L1ME LINE L1 5544 5724 -331 400 73 0 0 chr13 28389032 28389087 -91355811 - MER57A LTR ERV1 -348 55 1 225 0 0 0 chr13 28389368 28389393 -91355505 + (TC)n Simple_repeat Simple_repeat 2 26 0 262 277 0 24 chr13 28389673 28389756 -91355142 + MER117 DNA MER1_type 11 91 -106 211 377 0 0 chr13 28389846 28389923 -91354975 + MIR SINE MIR 45 121 -87 406 268 136 45 chr13 28389929 28390238 -91354660 + MER90 LTR ERV1 1 281 -333 2321 88 0 52 chr13 28390238 28390566 -91354332 - AluSx SINE Alu -1 311 1 406 268 136 45 chr13 28390566 28390690 -91354208 + MER90 LTR ERV1 281 612 -2 294 303 115 8 chr13 28390691 28390813 -91354085 + MIR SINE MIR 122 256 -6 802 215 124 51 chr13 28391458 28392116 -91352782 - Charlie7 DNA MER1_type -239 2373 1570 320 250 97 34 chr13 28392242 28392418 -91352480 - Charlie7 DNA MER1_type -2360 252 66 21 71 0 0 chr13 28394274 28394316 -91350582 + AT_rich Low_complexity Low_complexity 1 42 0 2304 78 0 42 chr13 28396269 28396577 -91348321 + AluSq SINE Alu 1 295 -18 208 83 42 42 chr13 28396577 28396625 -91348273 + (TTAAA)n Simple_repeat Simple_repeat 1 48 0 250 250 25 12 chr13 28398431 28398511 -91346387 + C-rich Low_complexity Low_complexity 3 83 0 195 42 0 0 chr13 28398686 28398710 -91346188 + (CGG)n Simple_repeat Simple_repeat 2 25 0 217 120 320 0 chr13 28399866 28399916 -91344982 - L2 LINE L2 0 3272 3207 216 262 0 0 chr13 28399887 28399929 -91344969 - L2 LINE L2 -37 3276 3235 * 193 231 0 39 chr13 28400017 28400069 -91344829 - L2 LINE L2 -73 3199 3150 468 189 315 0 chr13 28400980 28401091 -91343807 + MIR3 SINE MIR 35 180 -28 478 156 30 171 chr13 28401162 28401309 -91343589 + L1MB7 LINE L1 6008 6121 -57 2022 183 58 5 chr13 28401309 28401756 -91343142 - L1MB3 LINE L1 0 6183 5713 478 156 30 171 chr13 28401756 28401807 -91343091 + L1MB7 LINE L1 6121 6178 0 2233 108 0 10 chr13 28402355 28402662 -91342236 + AluSq SINE Alu 2 305 -8 1461 77 5 0 chr13 28402984 28403192 -91341706 - L1MA7 LINE L1 -367 5933 5725 1256 173 24 60 chr13 28403193 28403528 -91341370 + L1MA7 LINE L1 5966 6288 -3 427 293 71 0 chr13 28403540 28403680 -91341218 + MER5B DNA MER1_type 29 178 0 296 300 35 35 chr13 28404208 28404378 -91340520 - L2 LINE L2 -451 2863 2694 297 289 0 12 chr13 28404453 28404536 -91340362 - MIR3 SINE MIR -3 205 124 189 0 0 0 chr13 28404780 28404801 -91340097 + (TG)n Simple_repeat Simple_repeat 2 22 0 2267 75 4 0 chr13 28405669 28405949 -91338949 - AluSp SINE Alu -12 301 21 247 323 52 10 chr13 28406471 28406567 -91338331 + L2 LINE L2 3134 3233 -39 239 248 29 105 chr13 28406993 28407098 -91337800 - MIR3 SINE MIR -3 205 109 2314 104 0 3 chr13 28407350 28407648 -91337250 - AluSx SINE Alu -15 297 1 438 202 0 11 chr13 28407690 28407784 -91337114 - FLAM_A SINE Alu -14 128 36 22 35 0 0 chr13 28408057 28408086 -91336812 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr13 28408496 28408524 -91336374 + AT_rich Low_complexity Low_complexity 1 28 0 283 267 0 0 chr13 28408566 28408626 -91336272 + MIR SINE MIR 47 106 -156 1715 147 12 0 chr13 28408662 28408914 -91335984 + AluJo SINE Alu 9 263 -49 252 0 0 0 chr13 28408936 28408964 -91335934 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 294 268 62 9 chr13 28409563 28409675 -91335223 + MER94 DNA DNA 1 118 -16 377 313 69 8 chr13 28409849 28409980 -91334918 + MER91C DNA MER1_type 1 139 -1 588 268 64 32 chr13 28410145 28410365 -91334533 + MIR SINE MIR 26 252 -10 239 246 33 0 chr13 28410523 28410584 -91334314 + CT-rich Low_complexity Low_complexity 2 64 0 1823 183 0 7 chr13 28411323 28411623 -91333275 + AluJo SINE Alu 1 298 -14 625 277 113 26 chr13 28411776 28412007 -91332891 - MIR SINE MIR -6 256 6 1253 115 9 71 chr13 28412219 28412304 -91332594 - 7SLRNA srpRNA srpRNA -107 213 124 2087 103 68 0 chr13 28412304 28412596 -91332302 - AluSx SINE Alu 0 312 1 1253 115 9 71 chr13 28412596 28412736 -91332162 - 7SLRNA srpRNA srpRNA -196 124 2 283 297 108 9 chr13 28412737 28412848 -91332050 + L2 LINE L2 2938 3059 -213 574 297 48 52 chr13 28412982 28413292 -91331606 - L2 LINE L2 -49 3264 2956 188 0 74 0 chr13 28415186 28415213 -91329685 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 220 274 189 11 chr13 28415350 28415445 -91329453 - MIR SINE MIR -66 196 85 1756 186 0 0 chr13 28416042 28416343 -91328555 + AluJb SINE Alu 1 301 -11 1251 175 0 27 chr13 28417389 28417635 -91327263 + AluJb SINE Alu 82 312 0 483 278 73 92 chr13 28417908 28418225 -91326673 - L2 LINE L2 -44 3269 2959 1002 345 24 3 chr13 28418493 28418870 -91326028 - L2 LINE L2 -343 2971 2587 630 192 69 9 chr13 28418873 28419102 -91325796 + L1MA9 LINE L1 5946 6284 -28 8405 98 54 4 chr13 28419105 28420329 -91324569 + HSMAR1 DNA Mariner 3 1287 0 186 258 43 43 chr13 28420345 28420438 -91324460 - L2 LINE L2 -711 2603 2511 350 281 67 7 chr13 28421719 28421854 -91323044 - L1ME4a LINE L1 -203 5918 5776 2104 108 0 14 chr13 28422031 28422345 -91322553 + AluSx SINE Alu 1 310 0 1876 107 0 4 chr13 28424876 28425120 -91319778 + AluSp SINE Alu 1 243 -70 928 270 101 64 chr13 28427670 28428028 -91316870 - MLT1J LTR MaLR -6 505 123 2326 110 0 0 chr13 28428028 28428327 -91316571 + AluSg SINE Alu 1 299 -11 928 270 101 64 chr13 28428327 28428453 -91316445 - MLT1J LTR MaLR -388 123 3 450 274 126 9 chr13 28429716 28430061 -91314837 + MLT1J LTR MaLR 100 509 -2 1356 255 38 14 chr13 28430164 28430588 -91314310 + MER57B LTR ERV1 1 434 0 24 67 0 0 chr13 28430850 28430895 -91314003 + AT_rich Low_complexity Low_complexity 1 45 0 866 166 114 31 chr13 28431622 28431738 -91313160 + MER3 DNA MER1_type 1 106 -103 207 0 0 0 chr13 28431738 28431761 -91313137 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 866 166 114 31 chr13 28431761 28431772 -91313126 + MER3 DNA MER1_type 106 115 -94 2077 107 0 10 chr13 28431772 28432061 -91312837 - AluSx SINE Alu -26 286 1 866 166 114 31 chr13 28432061 28432125 -91312773 + MER3 DNA MER1_type 115 209 0 1588 159 39 26 chr13 28433851 28434159 -91310739 + AluJb SINE Alu 1 312 0 2622 172 32 10 chr13 28434173 28434688 -91310210 + MER41B LTR ERV1 90 474 -12 303 264 141 68 chr13 28434715 28434878 -91310020 + MER5A DNA MER1_type 9 183 -6 344 248 124 0 chr13 28435049 28435170 -91309728 + MIR SINE MIR 119 254 -8 212 347 0 0 chr13 28435195 28435267 -91309631 + MIR SINE MIR 83 154 -108 2085 148 7 0 chr13 28437619 28437952 -91306946 + AluJo SINE Alu 1 335 0 1764 189 0 3 chr13 28438562 28438883 -91306015 - AluJb SINE Alu 0 320 1 269 282 145 84 chr13 28438958 28439185 -91305713 + LTR67 LTR ERVL 2 242 -315 313 309 8 24 chr13 28439265 28439388 -91305510 + LTR67 LTR ERVL 423 543 -14 376 139 60 18 chr13 28441138 28441366 -91303532 + (TA)n Simple_repeat Simple_repeat 1 237 0 66 73 0 0 chr13 28441394 28441530 -91303368 + AT_rich Low_complexity Low_complexity 1 136 0 1646 148 3 99 chr13 28442986 28443330 -91301568 + AluJb SINE Alu 1 311 -1 594 220 25 0 chr13 28443363 28443481 -91301417 - FLAM_A SINE Alu -12 121 1 3739 188 71 48 chr13 28443524 28444059 -91300839 + MER21B LTR ERV1 5 567 -296 2069 118 7 17 chr13 28444059 28444348 -91300550 - AluSx SINE Alu -26 286 1 3739 188 71 48 chr13 28444348 28444640 -91300258 + MER21B LTR ERV1 567 851 -12 374 111 22 89 chr13 28444646 28444736 -91300162 - L1ME3 LINE L1 -24 6138 6055 244 91 0 0 chr13 28444737 28444770 -91300128 - MER3 DNA MER1_type -161 48 16 663 209 218 42 chr13 28444784 28445091 -91299807 - L1ME3 LINE L1 -156 6006 5646 2061 188 23 5 chr13 28445091 28445480 -91299418 - MER65C LTR ERV1 0 461 66 351 239 0 0 chr13 28445480 28445551 -91299347 - L1ME3 LINE L1 -528 5636 5566 738 189 29 17 chr13 28445606 28445781 -91299117 - MER3 DNA MER1_type -79 130 1 559 266 57 13 chr13 28445796 28445954 -91298944 - MER112 DNA MER1_type -73 187 23 615 85 11 43 chr13 28447132 28447226 -91297672 + AluY SINE Alu 205 295 -16 754 224 0 0 chr13 28447242 28447389 -91297509 - FAM SINE Alu -10 175 29 6584 127 13 35 chr13 28447491 28449292 -91295606 - L1MA8 LINE L1 0 6291 4541 524 264 39 11 chr13 28449700 28449882 -91295016 - MER117 DNA MER1_type -10 187 1 565 278 45 29 chr13 28450068 28450293 -91294605 + MIR SINE MIR 18 254 -8 1559 197 10 27 chr13 28451262 28451562 -91293336 - AluJo SINE Alu -13 299 5 29 0 0 0 chr13 28451581 28451610 -91293288 + AT_rich Low_complexity Low_complexity 1 29 0 740 165 8 8 chr13 28451611 28451732 -91293166 - FLAM_C SINE Alu -11 122 2 829 225 16 16 chr13 28451792 28451979 -91292919 - MER5A DNA MER1_type -2 187 1 252 139 0 111 chr13 28451997 28452069 -91292829 + HERVL66 LTR ERVL 2277 2340 -1989 244 231 144 10 chr13 28452703 28452807 -91292091 - L1ME4a LINE L1 -4 6117 6000 306 0 0 0 chr13 28452822 28452856 -91292042 + (TA)n Simple_repeat Simple_repeat 2 35 0 2372 83 7 3 chr13 28452856 28453158 -91291740 - AluSc SINE Alu -6 303 1 33 43 0 0 chr13 28453520 28453567 -91291331 + AT_rich Low_complexity Low_complexity 1 47 0 2471 105 0 0 chr13 28454281 28454594 -91290304 - AluSq SINE Alu 0 313 1 24 0 0 0 chr13 28454596 28454620 -91290278 + AT_rich Low_complexity Low_complexity 1 24 0 2066 143 46 108 chr13 28454854 28455352 -91289546 - MLT1C LTR MaLR 0 467 1 2258 129 6 0 chr13 28455373 28455705 -91289193 + MER47A DNA MER2_type 33 366 0 185 328 90 16 chr13 28458410 28458532 -91286366 - MIR SINE MIR -112 150 20 695 204 138 108 chr13 28460561 28460830 -91284068 + L1ME1 LINE L1 5880 6144 -22 274 338 26 19 chr13 28460950 28461104 -91283794 - L2 LINE L2 -214 3058 2904 457 184 87 0 chr13 28461221 28461324 -91283574 - L1MB3 LINE L1 -7 6176 6065 1716 146 0 15 chr13 28461324 28461585 -91283313 - AluSc SINE Alu -11 298 42 492 118 0 0 chr13 28461585 28461653 -91283245 - AluS SINE Alu -240 73 6 1183 153 23 23 chr13 28461659 28461875 -91283023 - L1MB4 LINE L1 -106 6074 5859 560 214 224 9 chr13 28462584 28462732 -91282166 - MIR SINE MIR 0 262 147 1334 198 183 23 chr13 28462732 28463126 -91281772 - MSTB2 LTR MaLR 0 457 1 560 214 224 9 chr13 28463126 28463187 -91281711 - MIR SINE MIR -115 147 8 293 288 115 21 chr13 28463394 28463585 -91281313 - L2 LINE L2 -1 3312 3104 203 167 0 0 chr13 28463669 28463705 -91281193 + (TG)n Simple_repeat Simple_repeat 1 36 0 2095 172 46 0 chr13 28463809 28464176 -91280722 + MLT1B LTR MaLR 1 384 -6 309 157 0 0 chr13 28464348 28464399 -91280499 - L2 LINE L2 -1 3271 3221 1947 198 77 25 chr13 28465006 28465486 -91279412 + MLT1D LTR MaLR 1 505 0 413 243 81 7 chr13 28465600 28465736 -91279162 + L2 LINE L2 3168 3313 0 2039 151 0 0 chr13 28467681 28467973 -91276925 + AluJo SINE Alu 1 292 -20 355 300 53 24 chr13 28469748 28469918 -91274980 + MIR SINE MIR 67 241 -21 2247 102 0 0 chr13 28469958 28470252 -91274646 + AluY SINE Alu 1 294 -17 285 304 114 19 chr13 28470355 28470513 -91274385 - MER5B DNA MER1_type -5 173 1 239 319 177 0 chr13 28471747 28471888 -91273010 - MIR3 SINE MIR -25 183 18 327 127 0 0 chr13 28473122 28473185 -91271713 + (GA)n Simple_repeat Simple_repeat 2 64 0 220 282 51 0 chr13 28473681 28473759 -91271139 - MIR3 SINE MIR -3 205 124 183 100 0 0 chr13 28474284 28474314 -91270584 + (CA)n Simple_repeat Simple_repeat 2 31 0 369 217 12 6 chr13 28474356 28474522 -91270376 + (CA)n Simple_repeat Simple_repeat 2 168 0 252 111 0 0 chr13 28474548 28474593 -91270305 + (CA)n Simple_repeat Simple_repeat 1 45 0 396 0 0 0 chr13 28475773 28475817 -91269081 + (TA)n Simple_repeat Simple_repeat 2 45 0 2007 123 0 17 chr13 28475817 28476119 -91268779 - MER46B DNA MER2_type -63 173 2 2273 108 3 19 chr13 28476741 28477057 -91267841 + AluSq SINE Alu 1 311 -2 234 0 71 24 chr13 28477094 28477136 -91267762 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 257 262 61 33 chr13 28477352 28477494 -91267404 - LTR16A1 LTR ERVL 0 457 329 1916 222 35 65 chr13 28478030 28478517 -91266381 + MLT1J LTR MaLR 9 481 -30 1773 171 17 10 chr13 28478517 28478816 -91266082 - AluJb SINE Alu -11 301 1 1916 222 35 65 chr13 28478816 28478847 -91266051 + MLT1J LTR MaLR 481 511 0 2425 80 0 3 chr13 28478911 28479211 -91265687 + AluY SINE Alu 1 299 -12 14308 134 49 9 chr13 28479284 28481608 -91263290 - Tigger1 DNA MER2_type 0 2418 3 209 340 21 0 chr13 28481620 28481714 -91263184 - MIR SINE MIR -27 235 140 238 358 24 0 chr13 28481723 28481846 -91263052 + L2 LINE L2 2626 2751 -563 1072 275 66 31 chr13 28481852 28482398 -91262500 - MLT1F LTR MaLR -17 525 10 252 194 75 43 chr13 28484823 28484916 -91259982 - L1MC5 LINE L1 -92 7869 7774 1956 158 12 26 chr13 28485507 28485849 -91259049 + MER1B DNA MER1_type 1 337 0 1058 165 62 22 chr13 28486768 28486992 -91257906 - MIR SINE MIR -1 261 29 2074 125 0 0 chr13 28488451 28488730 -91256168 + AluSq SINE Alu 1 279 -34 396 0 0 0 chr13 28488730 28488774 -91256124 + (CA)n Simple_repeat Simple_repeat 2 45 0 187 321 37 68 chr13 28490015 28490205 -91254693 + L3 LINE CR1 1084 1267 -310 2000 146 3 0 chr13 28492487 28492781 -91252117 - AluJb SINE Alu -17 295 1 2582 74 0 0 chr13 28492957 28493269 -91251629 + AluSx SINE Alu 1 312 0 296 276 61 10 chr13 28494312 28494410 -91250488 + MIR3 SINE MIR 85 187 -21 190 272 25 37 chr13 28494524 28494605 -91250293 + L2 LINE L2 2970 3049 -223 247 275 55 11 chr13 28494770 28494861 -91250037 + LTR48B LTR ERV1 6 100 -544 * 1206 225 82 64 chr13 28494835 28495029 -91249869 + MER39 LTR ERV1 260 449 -258 2118 138 0 0 chr13 28495029 28495320 -91249578 + AluSx SINE Alu 11 301 -11 1206 225 82 64 chr13 28495320 28495565 -91249333 + MER39 LTR ERV1 449 707 0 475 212 0 22 chr13 28497708 28497892 -91247006 + CT-rich Low_complexity Low_complexity 1 180 0 185 0 40 0 chr13 28498680 28498705 -91246193 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1683 161 10 24 chr13 28498712 28499003 -91245895 - AluJb SINE Alu -25 287 1 581 269 58 45 chr13 28499022 28499187 -91245711 - MIR SINE MIR -26 236 66 2253 116 106 30 chr13 28499187 28499229 -91245669 - MSTA LTR MaLR 0 428 391 2256 125 0 0 chr13 28499229 28499534 -91245364 + AluSg SINE Alu 1 305 -5 2253 116 106 30 chr13 28499534 28499889 -91245009 - MSTA LTR MaLR -37 391 1 581 269 58 45 chr13 28499889 28499946 -91244952 - MIR SINE MIR -196 66 11 1843 123 3 53 chr13 28501392 28501693 -91243205 + AluSq SINE Alu 21 306 -7 746 305 72 84 chr13 28501865 28502600 -91242298 + L3 LINE CR1 831 1556 -21 205 389 44 9 chr13 28503195 28503308 -91241590 + L2 LINE L2 3141 3257 -15 294 318 36 0 chr13 28503512 28503622 -91241276 - L2 LINE L2 0 3272 3159 2230 96 0 10 chr13 28503745 28504037 -91240861 - AluSq SINE Alu -24 289 1 2356 116 0 3 chr13 28504223 28504534 -91240364 + AluSx SINE Alu 1 310 -2 229 282 0 26 chr13 28504859 28504937 -91239961 + GA-rich Low_complexity Low_complexity 3 78 0 5320 80 18 0 chr13 28507890 28508569 -91236329 - LTR8 LTR ERV1 0 691 1 2007 111 42 0 chr13 28509747 28510035 -91234863 + AluY SINE Alu 1 300 -11 286 221 232 0 chr13 28510156 28510251 -91234647 + MER5B DNA MER1_type 5 121 -57 756 180 61 142 chr13 28510278 28510589 -91234309 - L1MC4 LINE L1 -6 8036 7751 220 159 68 0 chr13 28510605 28510649 -91234249 - MER5B DNA MER1_type -125 53 7 2132 95 51 3 chr13 28510956 28511250 -91233648 + AluY SINE Alu 1 308 -3 1293 181 41 24 chr13 28511395 28511688 -91233210 + MER33 DNA MER1_type 27 324 0 2873 168 86 58 chr13 28512282 28512989 -91231909 + LTR8A LTR ERV1 1 727 0 1988 152 62 3 chr13 28514995 28515331 -91229567 + MLT2C1 LTR ERVL 1 356 -41 21 0 0 0 chr13 28515406 28515427 -91229471 + AT_rich Low_complexity Low_complexity 1 21 0 4371 253 44 18 chr13 28515440 28516901 -91227997 + L1M2 LINE L1 2794 4291 -2557 734 184 14 7 chr13 28516901 28517042 -91227856 - L1M4 LINE L1 -1893 4253 4112 4446 156 20 52 chr13 28517822 28517991 -91226907 - L1MC2 LINE L1 -1 6623 6450 1958 132 49 0 chr13 28517991 28518279 -91226619 + AluSc SINE Alu 1 302 -7 4446 156 20 52 chr13 28518279 28519005 -91225893 - L1MC2 LINE L1 -174 6450 5757 1515 156 16 0 chr13 28519016 28519272 -91225626 - L1MA7 LINE L1 0 6291 6032 1460 168 58 0 chr13 28519272 28519637 -91225261 - L1MC2 LINE L1 -747 5679 5379 907 215 62 8 chr13 28519660 28519902 -91224996 - L1MC2 LINE L1 -4109 2317 2063 2036 141 295 4 chr13 28519923 28520397 -91224501 - L1MC2 LINE L1 -4507 1919 1308 810 238 140 98 chr13 28520397 28520750 -91224148 + MER34B LTR ERV1 1 386 -179 3943 128 48 64 chr13 28520750 28521366 -91223532 + LTR8 LTR ERV1 1 606 -85 2654 37 0 0 chr13 28521366 28521664 -91223234 - AluY SINE Alu -13 298 1 3943 128 48 64 chr13 28521664 28521749 -91223149 + LTR8 LTR ERV1 606 691 0 810 238 140 98 chr13 28521749 28521937 -91222961 + MER34B LTR ERV1 386 565 0 336 251 132 12 chr13 28521945 28522112 -91222786 + MIR SINE MIR 48 234 -28 2161 120 0 3 chr13 28522876 28523167 -91221731 + AluY SINE Alu 1 290 -21 1409 209 34 33 chr13 28523220 28523787 -91221111 + L1ME1 LINE L1 5617 6178 0 452 286 45 82 chr13 28523880 28523989 -91220909 + L1ME LINE L1 5384 5496 -625 2441 101 0 0 chr13 28523989 28524296 -91220602 + AluSx SINE Alu 2 308 -4 452 286 45 82 chr13 28524296 28524613 -91220285 + L1ME LINE L1 5496 5794 -327 248 282 0 14 chr13 28525372 28525443 -91219455 + (TG)n Simple_repeat Simple_repeat 2 71 0 22 0 0 0 chr13 28525732 28525754 -91219144 + AT_rich Low_complexity Low_complexity 1 22 0 2006 212 61 50 chr13 28525828 28526469 -91218429 + L1MB8 LINE L1 5531 6178 0 403 295 0 87 chr13 28526462 28526703 -91218195 + L1ME3 LINE L1 5732 5951 -211 * 288 0 0 0 chr13 28526723 28526755 -91218143 + (TA)n Simple_repeat Simple_repeat 2 33 0 31 0 0 0 chr13 28526925 28526956 -91217942 + AT_rich Low_complexity Low_complexity 1 31 0 503 261 137 0 chr13 28526959 28527120 -91217778 - MIR SINE MIR -26 236 54 2035 126 0 38 chr13 28527578 28527895 -91217003 - AluSx SINE Alu -7 305 1 315 237 97 0 chr13 28529935 28530028 -91214870 - MER5B DNA MER1_type -31 147 46 6523 133 25 10 chr13 28530033 28531268 -91213630 - L1MA5A LINE L1 0 6939 5690 1231 189 70 0 chr13 28531256 28531569 -91213329 - L1MA5A LINE L1 -2885 3903 3569 * 21 71 0 0 chr13 28531571 28531613 -91213285 + AT_rich Low_complexity Low_complexity 1 42 0 305 218 0 2 chr13 28531622 28531706 -91213192 - L1ME1 LINE L1 -1 6177 6092 8140 166 38 18 chr13 28531916 28532554 -91212344 - L1PA16 LINE L1 0 6166 5542 279 0 0 0 chr13 28532554 28532585 -91212313 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 8140 166 38 18 chr13 28532585 28534461 -91210437 - L1PA16 LINE L1 -624 5542 3611 1232 240 13 0 chr13 28534470 28534778 -91210120 - L1MA5A LINE L1 -3227 3561 3250 2065 110 16 3 chr13 28534785 28535093 -91209805 - AluSx SINE Alu 0 312 1 7672 204 13 32 chr13 28535093 28537158 -91207740 - L1MA5A LINE L1 -3958 2831 807 5884 219 34 28 chr13 28537157 28538502 -91206396 - L1M2c LINE L1 -5424 1365 14 * 2316 92 3 0 chr13 28538568 28538873 -91206025 + AluSp SINE Alu 1 306 -7 231 178 100 78 chr13 28539154 28539244 -91205654 - MLT1J LTR MaLR -341 170 79 223 318 53 60 chr13 28539316 28539467 -91205431 - MER5A DNA MER1_type 0 189 40 225 268 36 0 chr13 28539856 28539912 -91204986 + MIR SINE MIR 104 161 -101 * 266 269 0 0 chr13 28539901 28539968 -91204930 - MIR SINE MIR 0 262 196 203 133 22 22 chr13 28539968 28540013 -91204885 + (TA)n Simple_repeat Simple_repeat 1 45 0 713 275 26 36 chr13 28540013 28540186 -91204712 - MIR SINE MIR -57 205 33 2585 132 34 12 chr13 28540186 28540603 -91204295 + MSTA LTR MaLR 3 428 0 713 275 26 36 chr13 28540603 28540622 -91204276 - MIR SINE MIR -229 33 15 1030 80 0 66 chr13 28540750 28540901 -91203997 + AluSq/x SINE Alu 1 141 -171 1012 149 54 0 chr13 28540957 28541125 -91203773 - MSTA LTR MaLR 0 428 252 1050 105 0 7 chr13 28541135 28541287 -91203611 + AluSg/x SINE Alu 154 304 -8 182 83 56 0 chr13 28541406 28541442 -91203456 + (TCTCTG)n Simple_repeat Simple_repeat 5 42 0 335 213 276 8 chr13 28543456 28543583 -91201315 - MER5B DNA MER1_type -14 164 4 369 273 81 37 chr13 28543657 28543818 -91201080 - MER5B DNA MER1_type 0 178 11 515 220 0 0 chr13 28543868 28543968 -91200930 - MER5A DNA MER1_type -79 110 11 388 298 71 30 chr13 28544202 28544370 -91200528 - MER5B DNA MER1_type -3 175 1 812 164 0 8 chr13 28544888 28545045 -91199853 + FLAM_C SINE Alu 1 156 0 1387 161 6 129 chr13 28545439 28545780 -91199118 - AluJo SINE Alu -1 301 3 262 322 133 38 chr13 28545831 28546042 -91198856 - MIR SINE MIR -12 250 20 2673 144 31 5 chr13 28546193 28546610 -91198288 + MSTA LTR MaLR 1 428 0 688 121 107 4 chr13 28546922 28547057 -91197841 - L1MD3 LINE L1 0 7808 7675 2214 87 0 10 chr13 28547058 28547356 -91197542 - AluSx SINE Alu -17 295 1 181 321 147 28 chr13 28547467 28547576 -91197322 + MIR SINE MIR 109 230 -32 1499 211 0 7 chr13 28548915 28549200 -91195698 + AluJo SINE Alu 3 285 -27 21 36 0 0 chr13 28549200 28549228 -91195670 + AT_rich Low_complexity Low_complexity 1 28 0 351 132 0 0 chr13 28549232 28549285 -91195613 + MSTC LTR MaLR 372 424 -4 358 204 4 101 chr13 28549290 28549416 -91195482 - L1MC4 LINE L1 -1339 6983 1995 306 0 0 0 chr13 28549417 28549451 -91195447 + (TG)n Simple_repeat Simple_repeat 2 35 0 291 79 0 0 chr13 28549452 28549490 -91195408 - Alu SINE Alu -13 289 252 843 179 0 0 chr13 28549613 28549758 -91195140 + FRAM SINE Alu 1 142 -34 405 0 0 0 chr13 28549758 28549803 -91195095 + (TAA)n Simple_repeat Simple_repeat 3 47 0 211 268 138 89 chr13 28549813 28549906 -91194992 - MIR SINE MIR -15 247 145 2378 138 35 40 chr13 28549906 28550332 -91194566 - MSTC LTR MaLR -4 424 1 211 268 138 89 chr13 28550332 28550361 -91194537 - MIR SINE MIR -117 145 119 1654 151 39 10 chr13 28550881 28551192 -91193706 + L1MB3 LINE L1 5847 6166 -17 2135 109 7 0 chr13 28551203 28551506 -91193392 - AluSg SINE Alu -5 305 1 25 51 0 0 chr13 28551596 28551635 -91193263 + AT_rich Low_complexity Low_complexity 1 39 0 429 295 101 26 chr13 28551658 28552004 -91192894 - L1ME4a LINE L1 -135 5986 5615 531 231 0 0 chr13 28552042 28552176 -91192722 + (TG)n Simple_repeat Simple_repeat 1 134 0 492 301 98 6 chr13 28553009 28553192 -91191706 - L2 LINE L2 -5 3308 3109 319 269 60 118 chr13 28553506 28553870 -91191028 - L2 LINE L2 -1460 1854 1512 1457 235 86 45 chr13 28553873 28554468 -91190430 - L1MC5 LINE L1 -36 7925 7307 195 42 0 0 chr13 28554483 28554507 -91190391 + (GTTTG)n Simple_repeat Simple_repeat 5 28 0 1736 182 132 35 chr13 28554739 28555163 -91189735 + MLT1C LTR MaLR 1 465 -2 1390 266 89 67 chr13 28555166 28556071 -91188827 - L1MC5 LINE L1 -808 7153 6193 1927 120 0 52 chr13 28556071 28556395 -91188503 + AluSx SINE Alu 1 307 -5 1390 266 89 67 chr13 28556395 28557201 -91187697 - L1MC5 LINE L1 -1768 6193 5406 338 250 17 83 chr13 28557283 28557403 -91187495 + L2 LINE L2 3139 3250 -22 240 111 0 0 chr13 28557417 28557453 -91187445 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 743 310 78 23 chr13 28558192 28558832 -91186066 + L1ME3 LINE L1 5143 5826 -336 3195 215 14 9 chr13 28558841 28559491 -91185407 + MER82 DNA MER2_type 1 653 0 753 301 156 42 chr13 28560142 28560737 -91184161 - L3 LINE CR1 -517 1060 398 627 293 149 14 chr13 28561721 28561933 -91182965 - MLT1K LTR MaLR -114 474 292 744 124 62 98 chr13 28561933 28562127 -91182771 + MER53 DNA DNA 3 189 0 627 293 149 14 chr13 28562127 28562331 -91182567 - MLT1K LTR MaLR -296 292 2 208 361 14 0 chr13 28562458 28562530 -91182368 + L2 LINE L2 3151 3223 -49 246 376 15 15 chr13 28562773 28562906 -91181992 - MIR SINE MIR -80 182 50 245 326 133 0 chr13 28563298 28563396 -91181502 + MER91B DNA MER1_type 44 154 -36 279 230 46 35 chr13 28563448 28563535 -91181363 - MIR SINE MIR -111 97 10 2169 241 54 2 chr13 28564310 28564792 -91180106 + MLT2B3 LTR ERVL 2 508 -46 292 143 0 179 chr13 28564806 28564890 -91180008 + Tigger2 DNA MER2_type 1 69 -2649 * 2873 135 23 5 chr13 28564880 28565316 -91179582 + Tigger2 DNA MER2_type 2273 2716 -2 1926 163 60 3 chr13 28565360 28565729 -91179169 - MLT1B LTR MaLR 0 390 1 405 312 35 35 chr13 28566686 28566856 -91178042 + MIR3 SINE MIR 3 172 -36 1890 129 0 0 chr13 28567283 28567629 -91177269 - AluSx SINE Alu 0 347 2 216 0 0 0 chr13 28568505 28568529 -91176369 + (TC)n Simple_repeat Simple_repeat 2 25 0 261 0 0 0 chr13 28568529 28568558 -91176340 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr13 28568861 28568896 -91176002 + AT_rich Low_complexity Low_complexity 1 35 0 1719 211 98 7 chr13 28570895 28571312 -91173586 + MER31A LTR ERV1 1 455 -30 2057 91 14 3 chr13 28571980 28572266 -91172632 + AluSx SINE Alu 1 289 -23 931 149 0 11 chr13 28572266 28572441 -91172457 + (GGAA)n Simple_repeat Simple_repeat 1 173 0 194 213 0 53 chr13 28572441 28572535 -91172363 + GA-rich Low_complexity Low_complexity 4 92 0 401 304 44 38 chr13 28573018 28573176 -91171722 - MIR SINE MIR -15 247 89 198 200 44 0 chr13 28573174 28573219 -91171679 + MIR SINE MIR 50 96 -166 * 941 94 0 0 chr13 28573816 28573943 -91170955 - L1PA8 LINE L1 0 6172 6046 224 306 51 31 chr13 28574332 28574430 -91170468 + MIR SINE MIR 2 101 -161 728 259 58 8 chr13 28574632 28574891 -91170007 - LTR33 LTR ERVL -235 286 15 3093 162 11 22 chr13 28574937 28575292 -91169606 + MER34B LTR ERV1 1 349 -216 2010 92 50 3 chr13 28575292 28575574 -91169324 + AluSg SINE Alu 1 295 -15 3093 162 11 22 chr13 28575574 28575760 -91169138 + MER34B LTR ERV1 349 536 -29 267 348 208 13 chr13 28576064 28576377 -91168521 - L2 LINE L2 -373 2941 2568 523 251 6 55 chr13 28576378 28576541 -91168357 - L2 LINE L2 0 3313 3159 245 258 65 0 chr13 28577101 28577163 -91167735 - L2 LINE L2 -5 3308 3243 2004 117 0 0 chr13 28577586 28577898 -91167000 + AluSx SINE Alu 1 312 0 2682 96 30 6 chr13 28578788 28579154 -91165744 - THE1C LTR MaLR 0 375 1 2527 17 3 0 chr13 28579160 28579450 -91165448 + L1PA2 LINE L1 5861 6151 -4 191 59 0 29 chr13 28579461 28579495 -91165403 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 748 246 36 15 chr13 28580024 28580219 -91164679 + MLT1A1 LTR MaLR 167 365 0 427 341 17 0 chr13 28580537 28580753 -91164145 + (TG)n Simple_repeat Simple_repeat 1 219 0 747 262 113 51 chr13 28581373 28581782 -91163116 + LTR33 LTR ERVL 35 468 -53 284 267 178 20 chr13 28581834 28581935 -91162963 + L2 LINE L2 3192 3308 -5 222 289 62 55 chr13 28582664 28582792 -91162106 + MIR3 SINE MIR 78 206 -2 1899 122 0 34 chr13 28584161 28584455 -91160443 + AluSq SINE Alu 1 284 -29 1204 123 0 53 chr13 28584268 28584455 -91160443 + AluSq SINE Alu 108 443 0 1180 75 0 0 chr13 28584455 28584614 -91160284 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 206 346 47 19 chr13 28584616 28584723 -91160175 + L2 LINE L2 3159 3268 -4 607 134 126 0 chr13 28585311 28585438 -91159460 + MER53 DNA DNA 27 169 -20 195 42 0 0 chr13 28585954 28585978 -91158920 + (TG)n Simple_repeat Simple_repeat 1 24 0 488 279 50 25 chr13 28588038 28588239 -91156659 + MIR SINE MIR 9 214 -48 418 247 104 68 chr13 28588760 28589089 -91155809 + L2 LINE L2 2737 3088 -225 2284 102 10 0 chr13 28589635 28589930 -91154968 + AluSx SINE Alu 1 298 -14 3250 162 108 22 chr13 28590220 28590886 -91154012 + LTR8A LTR ERV1 1 723 -4 235 263 11 32 chr13 28590918 28591013 -91153885 + L2 LINE L2 3160 3252 -61 569 241 67 97 chr13 28591367 28591666 -91153232 + MLT1F1 LTR MaLR 1 290 -252 1047 205 68 0 chr13 28591824 28592073 -91152825 + MLT1F1 LTR MaLR 302 567 0 181 300 273 9 chr13 28592099 28592209 -91152689 - MIR SINE MIR -118 144 6 499 253 54 18 chr13 28594270 28594436 -91150462 + MIR SINE MIR 77 248 -14 434 260 140 25 chr13 28595298 28595533 -91149365 - MIR SINE MIR 0 262 1 374 358 26 66 chr13 28596655 28596760 -91148138 - L2 LINE L2 0 3272 3164 2049 129 13 10 chr13 28596760 28597069 -91147829 + AluSx SINE Alu 1 310 -2 374 358 26 66 chr13 28597069 28597419 -91147479 - L2 LINE L2 -108 3164 2835 208 377 50 0 chr13 28597498 28597718 -91147180 - L2 LINE L2 -910 2404 2174 356 311 46 13 chr13 28598058 28598209 -91146689 - L2 LINE L2 -17 3255 3100 1885 194 42 33 chr13 28598300 28598758 -91146140 - MLT1C LTR MaLR 0 467 6 254 267 0 0 chr13 28598774 28598834 -91146064 + L2 LINE L2 3246 3305 -8 340 274 141 94 chr13 28599165 28599233 -91145665 + L1MC4a LINE L1 5549 5612 -2196 1638 141 4 16 chr13 28599233 28599482 -91145416 + AluSx SINE Alu 58 303 -9 340 274 141 94 chr13 28599482 28599647 -91145251 + L1MC4a LINE L1 5612 5793 -2015 490 270 104 64 chr13 28599649 28599994 -91144904 - MLT1J LTR MaLR -49 462 104 271 293 8 49 chr13 28600024 28600147 -91144751 + L1MC4a LINE L1 5799 5916 -1892 2206 161 57 92 chr13 28600154 28600787 -91144111 + LTR36 LTR ERV1 1 611 0 396 359 5 26 chr13 28600853 28601045 -91143853 + LTR36-int LTR ERV1 115 302 -1484 1455 137 36 44 chr13 28601594 28601901 -91142997 + LTR36-int LTR ERV1 883 1191 -5407 4087 128 16 12 chr13 28601901 28602543 -91142355 - LTR9B LTR ERV1 0 644 1 1455 137 36 44 chr13 28602543 28602606 -91142292 + LTR36-int LTR ERV1 1191 2479 -4119 265 216 0 0 chr13 28602606 28602657 -91142241 + LTR30 LTR ERV1 1 51 -671 1768 107 44 38 chr13 28602658 28602993 -91141905 + LTR12 LTR ERV1 57 2032 -406 307 286 9 0 chr13 28602994 28603099 -91141799 + LTR30 LTR ERV1 553 658 -64 543 108 0 0 chr13 28603099 28603173 -91141725 + LTR12 LTR ERV1 641 714 0 1844 151 32 26 chr13 28603181 28603463 -91141435 + LTR36-int LTR ERV1 1260 1539 -5137 2411 64 0 7 chr13 28603463 28603758 -91141140 + AluY SINE Alu 17 309 -2 1844 151 32 26 chr13 28603758 28603968 -91140930 + LTR36-int LTR ERV1 1539 3752 -2924 662 117 0 0 chr13 28603959 28604053 -91140845 + LTR36-int LTR ERV1 3975 4068 -2530 * 3350 177 33 20 chr13 28604041 28604681 -91140217 + LTR36-int LTR ERV1 1631 2278 -2602 12677 155 44 65 chr13 28604728 28607532 -91137366 + LTR36-int LTR ERV1 2758 5796 -514 881 179 81 58 chr13 28607578 28607801 -91137097 + LTR36-int LTR ERV1 5923 6150 -181 437 171 1 0 chr13 28607816 28607890 -91137008 + MER49 LTR ERV1 488 557 -165 356 301 75 86 chr13 28607964 28608313 -91136585 + LTR36-int LTR ERV1 6705 7049 -73 2068 151 121 97 chr13 28608353 28608950 -91135948 + LTR36 LTR ERV1 1 611 0 260 122 0 49 chr13 28609257 28609298 -91135600 + MER34C LTR ERV1 1 39 -546 245 260 0 39 chr13 28609816 28609893 -91135005 + MER34 LTR ERV1 67 140 -402 * 1102 208 156 57 chr13 28609866 28610289 -91134609 + MER39 LTR ERV1 220 684 -23 2290 108 0 0 chr13 28610358 28610653 -91134245 - AluSg SINE Alu -15 295 1 2002 148 7 19 chr13 28611265 28611575 -91133323 + AluSx SINE Alu 1 306 -6 794 206 104 128 chr13 28611896 28612387 -91132511 - MER39 LTR ERV1 -80 627 1 22 35 0 0 chr13 28612423 28612452 -91132446 + AT_rich Low_complexity Low_complexity 1 29 0 2113 120 0 13 chr13 28612617 28612917 -91131981 + AluSx SINE Alu 1 296 -16 234 261 0 54 chr13 28612964 28613056 -91131842 + L2 LINE L2 3083 3169 -144 630 143 0 0 chr13 28613076 28613181 -91131717 - L1MB4 LINE L1 -2 6178 6074 446 231 74 84 chr13 28613590 28613772 -91131126 + MER31-int LTR ERV1 1348 1530 -3341 2559 43 0 7 chr13 28613772 28614071 -91130827 - AluY SINE Alu -13 298 2 446 231 74 84 chr13 28614071 28614091 -91130807 + MER31-int LTR ERV1 1530 2493 -2378 512 198 32 0 chr13 28614419 28614545 -91130353 + MER31-int LTR ERV1 1724 1853 -6267 264 123 25 99 chr13 28614548 28614629 -91130269 + MER31-int LTR ERV1 3888 3962 -2636 4623 206 99 72 chr13 28614667 28617315 -91127583 + MER31-int LTR ERV1 2876 7144 -393 2595 158 23 44 chr13 28617315 28617835 -91127063 + LTR54 LTR ERV1 1 509 -1 2211 111 3 7 chr13 28618088 28618386 -91126512 + AluSx SINE Alu 1 297 -15 244 336 35 49 chr13 28618418 28618644 -91126254 + L1MC/D LINE L1 5564 5786 -2022 605 222 122 11 chr13 28618647 28618827 -91126071 - MER63A DNA MER1_type 0 210 11 3973 99 106 2 chr13 28619268 28619851 -91125047 - LTR9B LTR ERV1 0 644 1 306 237 132 91 chr13 28621121 28621340 -91123558 + MIR SINE MIR 14 241 -21 2620 56 0 0 chr13 28621790 28622093 -91122805 + AluY SINE Alu 1 303 -8 21 0 0 0 chr13 28622133 28622154 -91122744 + AT_rich Low_complexity Low_complexity 1 21 0 459 243 34 20 chr13 28622182 28622330 -91122568 - MIR SINE MIR -1 261 112 262 259 28 54 chr13 28622623 28622835 -91122063 + L1MC/D LINE L1 5334 5544 -698 297 302 66 0 chr13 28623190 28623296 -91121602 - MIR3 SINE MIR -44 164 52 806 217 16 5 chr13 28623495 28623679 -91121219 + MER5A DNA MER1_type 1 186 -3 504 215 158 13 chr13 28623689 28623847 -91121051 - MER5A DNA MER1_type 0 189 9 344 193 244 8 chr13 28623933 28624052 -91120846 + MER5A DNA MER1_type 9 155 -34 2002 191 59 65 chr13 28624582 28624684 -91120214 - MLT1D LTR MaLR 0 505 404 2044 82 104 0 chr13 28624684 28624953 -91119945 + AluSx SINE Alu 1 297 -15 2002 191 59 65 chr13 28624953 28625358 -91119540 - MLT1D LTR MaLR -101 404 1 346 318 129 9 chr13 28626404 28626621 -91118277 - MIR SINE MIR -1 261 19 298 300 181 6 chr13 28627814 28627974 -91116924 + MIR SINE MIR 54 241 -21 325 157 0 0 chr13 28628305 28628356 -91116542 - LTR67 LTR ERVL 0 557 507 747 202 202 22 chr13 28628431 28628659 -91116239 - MLT1J1 LTR MaLR -175 271 3 262 295 13 0 chr13 28628722 28628800 -91116098 - LTR67 LTR ERVL -476 81 3 337 183 28 28 chr13 28628846 28628917 -91115981 - MLT1F1 LTR MaLR -131 436 366 440 214 51 17 chr13 28629094 28629211 -91115687 - L2 LINE L2 0 3313 3193 2161 111 7 33 chr13 28629258 28629564 -91115334 - AluSx SINE Alu -14 298 1 835 124 23 0 chr13 28630882 28631011 -91113887 + L1MB3 LINE L1 5982 6113 -70 2195 115 0 3 chr13 28631355 28631650 -91113248 + AluSx SINE Alu 1 294 -18 1759 169 48 67 chr13 28631803 28632145 -91112753 + MER31-int LTR ERV1 2654 2988 -3343 2269 137 6 3 chr13 28632145 28632481 -91112417 + MER1B DNA MER1_type 1 337 0 1759 169 48 67 chr13 28632481 28632557 -91112341 + MER31-int LTR ERV1 2988 3064 -3267 282 188 101 0 chr13 28632558 28632627 -91112271 + MER31-int LTR ERV1 1339 1414 -3522 * 482 260 84 36 chr13 28632568 28632818 -91112080 + LTR57-int LTR ERVL 1249 1510 -3833 618 222 66 70 chr13 28632882 28633125 -91111773 + MER31-int LTR ERV1 1736 1977 -2959 * 938 225 42 63 chr13 28633117 28633625 -91111273 + MER31-int LTR ERV1 2714 4068 -1697 676 168 41 46 chr13 28633790 28633986 -91110912 + MER31-int LTR ERV1 3536 3730 -2868 2037 138 0 14 chr13 28634002 28634299 -91110599 - AluSx SINE Alu -19 293 1 1215 212 84 84 chr13 28634527 28635135 -91109763 + MER31-int LTR ERV1 2481 3087 -2859 1694 190 3 3 chr13 28635135 28635424 -91109474 + AluJo SINE Alu 1 289 -23 1215 212 84 84 chr13 28635424 28635572 -91109326 + MER31-int LTR ERV1 3087 3233 -2713 238 33 0 0 chr13 28635572 28635602 -91109296 + (TTG)n Simple_repeat Simple_repeat 1 180 0 2277 75 4 0 chr13 28635602 28635881 -91109017 - AluY SINE Alu -31 280 1 1215 212 84 84 chr13 28635881 28636410 -91108488 + MER31-int LTR ERV1 3232 4900 -1046 2843 109 28 14 chr13 28636429 28636851 -91108047 - MSTA LTR MaLR 0 428 1 2195 89 17 0 chr13 28636878 28637170 -91107728 + AluY SINE Alu 1 297 -14 536 227 13 13 chr13 28637320 28637390 -91107508 + MER31-int LTR ERV1 4256 4325 -611 1596 123 9 13 chr13 28637390 28637618 -91107280 - AluSg/x SINE Alu -10 300 74 536 227 13 13 chr13 28637618 28637697 -91107201 + MER31-int LTR ERV1 4324 4405 -531 2208 116 17 0 chr13 28637795 28638120 -91106778 + AluSx SINE Alu 1 312 0 2899 118 18 51 chr13 28639455 28639945 -91104953 + MER101 LTR ERV1 1 474 0 1353 183 166 46 chr13 28640576 28640987 -91103911 + MLT1C LTR MaLR 8 467 0 327 293 32 18 chr13 28641355 28641447 -91103451 + MIR SINE MIR 61 156 -99 1341 218 29 55 chr13 28641447 28641827 -91103071 + MLT1A2 LTR MaLR 1 370 -4 327 293 32 18 chr13 28641827 28641865 -91103033 + MIR SINE MIR 156 192 -63 231 297 54 0 chr13 28642604 28642715 -91102183 + MLT1L LTR MaLR 468 584 -31 1762 156 49 52 chr13 28642990 28643135 -91101763 - MLT1A1 LTR MaLR 0 365 221 2980 80 3 0 chr13 28643135 28643509 -91101389 + THE1C LTR MaLR 1 375 0 1762 156 49 52 chr13 28643509 28643729 -91101169 - MLT1A1 LTR MaLR -144 221 1 2379 102 0 13 chr13 28643784 28644099 -91100799 - AluSx SINE Alu -1 311 1 4275 188 55 18 chr13 28644172 28645003 -91099895 - MER21B LTR ERV1 -1 862 1 234 361 34 17 chr13 28645219 28645338 -91099560 + MIR SINE MIR 24 144 -64 237 310 54 93 chr13 28645474 28645524 -91099374 + MIR SINE MIR 50 100 -162 2097 120 20 7 chr13 28645524 28645824 -91099074 - AluSq SINE Alu -9 304 1 237 310 54 93 chr13 28645824 28645902 -91098996 + MIR SINE MIR 100 173 -89 298 260 24 24 chr13 28646712 28646839 -91098059 + MLT1I LTR MaLR 80 206 -203 207 342 42 17 chr13 28647071 28647191 -91097707 - L2 LINE L2 -14 3258 3136 2734 35 0 3 chr13 28647404 28647716 -91097182 - AluY SINE Alu 0 311 1 2264 177 44 18 chr13 28647972 28648425 -91096473 - MLT1C LTR MaLR -2 465 1 352 314 9 9 chr13 28648902 28649007 -91095891 - L2 LINE L2 -7 3265 3161 453 215 0 0 chr13 28649182 28649261 -91095637 + L2 LINE L2 3221 3299 -14 1665 98 0 0 chr13 28649265 28649479 -91095419 + AluSg/x SINE Alu 89 302 -8 2355 64 0 4 chr13 28650124 28650448 -91094450 + AluY SINE Alu 1 323 0 893 294 39 56 chr13 28650478 28650964 -91093934 + L2 LINE L2 2429 2906 -408 602 298 0 42 chr13 28651077 28651245 -91093653 + L2 LINE L2 3110 3270 -2 423 307 34 65 chr13 28651576 28651928 -91092970 - MLT1K LTR MaLR -2 586 246 638 286 105 21 chr13 28652302 28652627 -91092271 - L1MC4a LINE L1 -1888 5920 5569 267 288 0 12 chr13 28652715 28652795 -91092103 + MER5A DNA MER1_type 111 189 0 422 331 32 8 chr13 28652854 28653105 -91091793 - L1MC4a LINE L1 -2298 5510 5254 266 146 182 0 chr13 28653266 28653321 -91091577 + MER5B DNA MER1_type 114 178 0 206 326 126 0 chr13 28653321 28653408 -91091490 - L2 LINE L2 -52 3220 3122 190 242 162 40 chr13 28653961 28654060 -91090838 + L2 LINE L2 3162 3272 0 199 213 21 43 chr13 28654136 28654183 -91090715 + MIR SINE MIR 215 260 -2 1758 184 0 0 chr13 28655964 28656241 -91088657 + AluJo SINE Alu 1 277 -35 288 281 163 13 chr13 28659057 28659210 -91085688 - MIR SINE MIR -78 184 9 255 140 43 183 chr13 28659413 28659459 -91085439 - MIR SINE MIR -74 188 159 1666 197 0 3 chr13 28659459 28659639 -91085259 - AluJb SINE Alu 0 310 130 207 0 0 0 chr13 28659639 28659662 -91085236 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1666 197 0 3 chr13 28659662 28659792 -91085106 - AluJb SINE Alu -180 130 1 255 140 43 183 chr13 28659792 28659837 -91085061 - MIR SINE MIR -103 159 109 637 239 203 29 chr13 28659919 28660304 -91084594 - LTR33 LTR ERVL -54 467 16 180 0 0 0 chr13 28661073 28661093 -91083805 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1479 166 72 19 chr13 28661688 28662008 -91082890 + MLT1B LTR MaLR 54 390 0 310 302 138 2 chr13 28662250 28662441 -91082457 + MIR3 SINE MIR 21 242 -20 182 103 0 26 chr13 28662903 28662942 -91081956 + (CGG)n Simple_repeat Simple_repeat 2 39 0 22 35 0 0 chr13 28663744 28663773 -91081125 + AT_rich Low_complexity Low_complexity 1 29 0 1954 166 41 0 chr13 28663860 28664198 -91080700 - MLT1A1 LTR MaLR -13 352 1 1112 171 28 0 chr13 28665237 28665418 -91079480 + MER5A DNA MER1_type 2 187 -2 385 280 71 145 chr13 28665641 28665817 -91079081 + L3 LINE CR1 570 757 -820 1891 147 43 40 chr13 28665817 28666191 -91078707 - THE1C LTR MaLR 0 375 1 385 280 71 145 chr13 28666191 28666517 -91078381 + L3 LINE CR1 757 1024 -553 1378 196 81 110 chr13 28666517 28666964 -91077934 + MLT1D LTR MaLR 1 435 -70 2044 115 0 0 chr13 28666964 28667287 -91077611 - AluY SINE Alu 0 325 3 1378 196 81 110 chr13 28667287 28667357 -91077541 + MLT1D LTR MaLR 435 505 0 385 280 71 145 chr13 28667357 28667446 -91077452 + L3 LINE CR1 1024 1118 -459 763 265 69 52 chr13 28667446 28667737 -91077161 + L3 LINE CR1 1279 1574 -3 742 315 65 15 chr13 28668658 28669090 -91075808 + L1MC/D LINE L1 5257 5705 -503 212 372 121 14 chr13 28669562 28669785 -91075113 + L3 LINE CR1 255 501 -1076 186 302 0 0 chr13 28669830 28669873 -91075025 + MIR SINE MIR 97 139 -123 494 238 82 14 chr13 28669975 28670122 -91074776 + MIR3 SINE MIR 41 197 -11 1304 256 41 5 chr13 28670186 28670774 -91074124 - L1MC4 LINE L1 -93 7715 7188 358 222 0 0 chr13 28670830 28670911 -91073987 + MLT1B LTR MaLR 310 390 0 417 235 191 0 chr13 28670912 28671048 -91073850 - L1MC4 LINE L1 -1422 6620 6459 332 310 187 23 chr13 28671476 28671824 -91073074 + L2 LINE L2 2258 2662 -652 203 320 97 26 chr13 28672132 28672360 -91072538 + L2 LINE L2 2658 2901 -413 246 271 152 26 chr13 28672859 28673010 -91071888 + MIR3 SINE MIR 17 186 -22 269 307 119 0 chr13 28673238 28673424 -91071474 + MIR SINE MIR 33 245 -17 * 675 272 46 0 chr13 28673401 28673574 -91071324 - MIR SINE MIR -8 254 74 193 308 0 0 chr13 28673640 28673659 -91071239 + MIR SINE MIR 198 249 -13 201 182 0 0 chr13 28673659 28673692 -91071206 + L2 LINE L2 3262 3294 -19 323 23 23 0 chr13 28673819 28673863 -91071035 + (TG)n Simple_repeat Simple_repeat 2 46 0 370 301 41 8 chr13 28674376 28674499 -91070399 - MIR3 SINE MIR -4 204 78 184 319 35 57 chr13 28674612 28674753 -91070145 - L3 LINE CR1 -107 1470 1333 608 274 53 36 chr13 28675445 28675670 -91069228 - MIR SINE MIR 0 262 32 180 278 46 93 chr13 28676070 28676221 -91068677 - L2 LINE L2 -1975 1339 1196 456 287 53 45 chr13 28676311 28676555 -91068343 + L2 LINE L2 2825 3070 -202 210 71 0 0 chr13 28676621 28676649 -91068249 + (T)n Simple_repeat Simple_repeat 1 28 0 2354 92 0 0 chr13 28677101 28677394 -91067504 - AluSx SINE Alu -19 293 1 2057 114 28 14 chr13 28678240 28678529 -91066369 - AluSx SINE Alu -19 293 1 257 245 31 31 chr13 28678530 28678628 -91066270 + Charlie7 DNA MER1_type 2513 2610 -2 2101 95 3 7 chr13 28678954 28679273 -91065625 + AluSx SINE Alu 1 318 0 443 318 68 6 chr13 28679277 28679453 -91065445 - MIR SINE MIR -72 190 4 2400 67 0 41 chr13 28679780 28680094 -91064804 + AluSx SINE Alu 1 301 -11 1307 143 46 0 chr13 28680506 28680743 -91064155 - L1MA8 LINE L1 -1 6290 6043 522 292 101 14 chr13 28682602 28682821 -91062077 - MIR SINE MIR -10 252 15 209 278 250 11 chr13 28683054 28683230 -91061668 - L2 LINE L2 -12 3301 3084 281 275 124 34 chr13 28683414 28683592 -91061306 - L2 LINE L2 -554 2760 2567 445 278 114 18 chr13 28683956 28684183 -91060715 - L2 LINE L2 -780 2534 2286 201 345 12 0 chr13 28684232 28684316 -91060582 + C-rich Low_complexity Low_complexity 6 90 0 23 33 0 0 chr13 28684374 28684404 -91060494 + AT_rich Low_complexity Low_complexity 1 30 0 541 287 65 28 chr13 28684559 28684775 -91060123 - MIR SINE MIR -23 239 16 293 299 75 41 chr13 28685145 28685292 -91059606 + MIR SINE MIR 35 186 -76 445 269 0 0 chr13 28685418 28685526 -91059372 + MIR SINE MIR 119 226 -36 1043 262 31 12 chr13 28685569 28685890 -91059008 + L1MC4 LINE L1 6718 7044 -998 1775 81 0 0 chr13 28685910 28686121 -91058777 + AluSg/x SINE Alu 88 298 -14 403 333 68 0 chr13 28686165 28686399 -91058499 + L1MC4 LINE L1 7171 7420 -622 394 221 88 0 chr13 28686442 28686555 -91058343 + L1MC4 LINE L1 7918 8040 -2 2713 65 0 0 chr13 28686905 28687328 -91057570 - L1P3 LINE L1 -566 5606 5184 4076 56 15 0 chr13 28687328 28687846 -91057052 + L1PA8 LINE L1 5646 6172 0 462 331 60 59 chr13 28688098 28688139 -91056759 + L2 LINE L2 2076 2115 -1199 641 184 0 0 chr13 28688139 28688264 -91056634 - L1MA4A LINE L1 -3 6300 6176 462 331 60 59 chr13 28688264 28688812 -91056086 + L2 LINE L2 2115 2669 -645 2711 51 0 0 chr13 28688812 28689123 -91055775 + AluY SINE Alu 1 311 0 462 331 60 59 chr13 28689123 28689181 -91055717 + L2 LINE L2 2669 2725 -589 225 281 148 23 chr13 28689390 28689518 -91055380 + L2 LINE L2 3086 3229 -43 440 285 12 22 chr13 28689561 28689715 -91055183 - MIR3 SINE MIR -1 207 58 2011 156 0 10 chr13 28690249 28690551 -91054347 - AluJo SINE Alu -13 299 1 1214 221 89 63 chr13 28691977 28692439 -91052459 - MLT1J LTR MaLR -8 503 30 335 325 98 8 chr13 28692649 28692772 -91052126 + MER5A DNA MER1_type 55 188 -1 202 139 28 0 chr13 28693117 28693153 -91051745 + GA-rich Low_complexity Low_complexity 3 39 0 1103 229 104 18 chr13 28693295 28693769 -91051129 + MER20B DNA MER1_type 118 667 -116 1579 158 3 99 chr13 28694482 28694804 -91050094 + AluJo SINE Alu 1 291 -21 805 199 12 12 chr13 28695082 28695243 -91049655 - MER5B DNA MER1_type 0 178 18 1796 188 36 35 chr13 28695849 28696303 -91048595 + MLT1C LTR MaLR 1 619 -7 585 309 27 18 chr13 28696350 28696570 -91048328 + MIR SINE MIR 12 233 -29 370 277 69 15 chr13 28697398 28697528 -91047370 - L2 LINE L2 -1 3312 3176 190 283 50 100 chr13 28697672 28697792 -91047106 - L2 LINE L2 -4 3309 3196 873 174 16 47 chr13 28698641 28698831 -91046067 - MER20B DNA MER1_type -26 193 10 360 225 113 0 chr13 28698902 28698982 -91045916 - MER81 DNA DNA -25 89 1 296 312 69 35 chr13 28699056 28699258 -91045640 + L2 LINE L2 3099 3307 -6 814 278 0 54 chr13 28699681 28699922 -91044976 + MIR SINE MIR 14 241 -21 2174 236 38 22 chr13 28699952 28700485 -91044413 - MLT1F LTR MaLR 0 542 2 267 194 5 10 chr13 28702545 28702621 -91042277 + MIR SINE MIR 57 103 -105 * 362 287 67 22 chr13 28702599 28702867 -91042031 + L2 LINE L2 2404 2683 -631 586 272 51 30 chr13 28702932 28703167 -91041731 - MIR SINE MIR -22 240 1 203 269 173 10 chr13 28704643 28704747 -91040151 + MIR3 SINE MIR 65 185 -23 23 68 0 0 chr13 28704767 28704811 -91040087 + AT_rich Low_complexity Low_complexity 1 44 0 1765 170 38 9 chr13 28706410 28706751 -91038147 - MLT1A1 LTR MaLR -12 353 3 362 340 104 0 chr13 28707319 28707463 -91037435 - MIR3 SINE MIR -47 161 3 2380 90 0 0 chr13 28708004 28708294 -91036604 + AluSx SINE Alu 2 291 -21 384 22 0 0 chr13 28708433 28708478 -91036420 + (CA)n Simple_repeat Simple_repeat 1 45 0 306 253 104 3 chr13 28709056 28709151 -91035747 + MIR SINE MIR 11 124 -84 1220 122 145 37 chr13 28709152 28709366 -91035532 - AluSx SINE Alu -12 300 64 229 282 0 26 chr13 28710883 28710961 -91033937 + CT-rich Low_complexity Low_complexity 3 78 0 2499 75 10 0 chr13 28711286 28711593 -91033305 - AluSp SINE Alu -2 311 2 182 247 124 31 chr13 28711691 28711788 -91033110 - L2 LINE L2 -1047 2267 2162 702 141 39 0 chr13 28713145 28713273 -91031625 + L1P3 LINE L1 5343 5475 -697 949 236 94 9 chr13 28713339 28713572 -91031326 - MIR SINE MIR 0 262 10 608 206 90 13 chr13 28713818 28713973 -91030925 - L2 LINE L2 -5 3308 3142 * 850 262 86 11 chr13 28713966 28714233 -91030665 - L2 LINE L2 -353 2961 2675 302 175 0 169 chr13 28714872 28715026 -91029872 + L1M1 LINE L1 5327 5423 -728 2462 92 0 0 chr13 28715043 28715349 -91029549 + AluSg SINE Alu 2 307 -3 908 87 13 40 chr13 28715810 28715959 -91028939 + MSTB1 LTR MaLR 286 430 -2 463 253 32 158 chr13 28715994 28716310 -91028588 - MER21B LTR ERV1 -582 281 6 2925 173 55 11 chr13 28716911 28717658 -91027240 - L1MA4 LINE L1 -15 6290 5488 2276 105 0 3 chr13 28718001 28718296 -91026602 - AluSx SINE Alu -14 298 5 207 107 0 0 chr13 28718328 28718356 -91026542 - MIR SINE MIR -114 148 121 248 159 68 0 chr13 28718487 28718531 -91026367 + MIR SINE MIR 121 167 -95 2305 107 0 3 chr13 28718543 28718842 -91026056 + AluSx SINE Alu 1 298 -14 2009 146 7 10 chr13 28719146 28719448 -91025450 + AluSx SINE Alu 3 303 -9 2750 129 17 2 chr13 28719925 28720342 -91024556 - MSTB LTR MaLR -3 423 1 238 257 0 68 chr13 28720637 28720711 -91024187 + MIR SINE MIR 36 104 -158 260 171 0 0 chr13 28720737 28720778 -91024120 + L2 LINE L2 3256 3296 -17 276 298 88 35 chr13 28721273 28721387 -91023511 - L2 LINE L2 -10 3262 3143 258 264 57 28 chr13 28721723 28721829 -91023069 + Charlie7 DNA MER1_type 1 109 -2503 488 243 71 47 chr13 28722462 28722631 -91022267 + MIR SINE MIR 71 243 -19 1848 232 153 30 chr13 28723911 28724676 -91020222 + L2 LINE L2 2187 2857 -456 2293 118 48 22 chr13 28724676 28725031 -91019867 + THE1B LTR MaLR 1 364 0 1848 232 153 30 chr13 28725031 28725184 -91019714 + L2 LINE L2 2857 2990 -323 2286 125 3 0 chr13 28725184 28725495 -91019403 - AluSx SINE Alu 0 312 1 1848 232 153 30 chr13 28725495 28725589 -91019309 + L2 LINE L2 2990 3311 -2 328 280 119 28 chr13 28725623 28725766 -91019132 + MIR SINE MIR 3 158 -104 302 253 80 53 chr13 28725844 28725994 -91018904 + L2 LINE L2 2564 2717 -597 3701 221 19 60 chr13 28726050 28727058 -91017840 + L1M4 LINE L1 38 1004 -5538 340 239 0 0 chr13 28727063 28727134 -91017764 + MLT2B2 LTR ERVL 380 450 -65 1905 230 74 11 chr13 28727138 28727803 -91017095 + L1M4 LINE L1 3420 4126 -2518 335 299 136 69 chr13 28727932 28728293 -91016605 + L2 LINE L2 2886 3270 -2 285 245 31 41 chr13 28729197 28729295 -91015603 - MIR SINE MIR -157 105 9 2712 128 74 54 chr13 28731165 28731301 -91013597 - LTR36 LTR ERV1 -38 573 441 2052 114 0 0 chr13 28731301 28731574 -91013324 + AluSx SINE Alu 1 273 -39 2712 128 74 54 chr13 28731574 28731991 -91012907 - LTR36 LTR ERV1 -170 441 9 2303 107 3 19 chr13 28731991 28732308 -91012590 + AluSp SINE Alu 1 312 -1 363 304 69 19 chr13 28732406 28732579 -91012319 + MIR SINE MIR 70 246 -16 252 0 0 0 chr13 28732756 28732784 -91012114 + (TG)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr13 28733932 28733954 -91010944 + AT_rich Low_complexity Low_complexity 1 22 0 317 356 39 86 chr13 28735612 28736019 -91008879 + L2 LINE L2 2881 3268 -4 898 264 17 17 chr13 28737698 28737937 -91006961 - MIR SINE MIR -23 239 1 2187 104 3 0 chr13 28738436 28738734 -91006164 + AluY SINE Alu 1 299 -12 910 199 70 7 chr13 28739818 28740207 -91004691 - L1MDa LINE L1 -3712 2828 2407 3159 126 37 66 chr13 28740215 28740911 -91003987 - Tigger3(Golem) DNA MER2_type 0 3029 2354 1077 206 5 0 chr13 28740904 28741103 -91003795 - Tigger3(Golem) DNA MER2_type -2828 201 2 * 2635 213 68 11 chr13 28741105 28741855 -91003043 - L1MDa LINE L1 -4141 2399 1607 825 304 43 31 chr13 28742278 28742316 -91002582 - L1MDa LINE L1 -6098 442 406 2382 111 11 32 chr13 28742316 28742687 -91002211 - THE1B LTR MaLR 0 364 2 825 304 43 31 chr13 28742687 28743069 -91001829 - L1MDa LINE L1 -6134 406 17 180 0 0 0 chr13 28744235 28744255 -91000643 + (TG)n Simple_repeat Simple_repeat 1 20 0 422 243 19 19 chr13 28745050 28745153 -90999745 - L2 LINE L2 0 3313 3211 847 317 149 10 chr13 28745496 28745906 -90998992 - L3 LINE CR1 -668 909 443 189 306 35 35 chr13 28746672 28746757 -90998141 + MER5B DNA MER1_type 1 85 -93 2536 44 0 3 chr13 28746822 28747119 -90997779 - AluY SINE Alu -15 296 1 2133 102 0 20 chr13 28747120 28747414 -90997484 - AluY SINE Alu -23 288 1 267 206 32 16 chr13 28747414 28747477 -90997421 + MER5B DNA MER1_type 114 177 -1 202 204 114 0 chr13 28747828 28747872 -90997026 + MIR SINE MIR 81 129 -79 2313 119 0 0 chr13 28747892 28748204 -90996694 + AluSx SINE Alu 1 312 0 546 261 81 58 chr13 28748498 28748793 -90996105 + MLT1I LTR MaLR 71 372 -37 1926 118 33 0 chr13 28750082 28750394 -90994504 + AluSx SINE Alu 1 321 0 216 0 0 0 chr13 28750621 28750645 -90994253 + (T)n Simple_repeat Simple_repeat 1 24 0 197 340 0 0 chr13 28750968 28751021 -90993877 + L2 LINE L2 3175 3227 -86 371 145 26 26 chr13 28752158 28752234 -90992664 + MER63 DNA MER1_type 677 752 -310 723 287 20 5 chr13 28752339 28752541 -90992357 - MIR SINE MIR -39 223 19 357 278 62 14 chr13 28753510 28753654 -90991244 - MER112 DNA MER1_type -17 243 93 1258 232 156 8 chr13 28753735 28754256 -90990642 + Charlie7 DNA MER1_type 1758 2355 -257 29 60 0 0 chr13 28754612 28754662 -90990236 + AT_rich Low_complexity Low_complexity 1 50 0 458 314 58 5 chr13 28756762 28756950 -90987948 + MIR SINE MIR 7 204 -58 184 348 87 26 chr13 28757138 28757253 -90987645 + MIR3 SINE MIR 64 185 -23 326 156 143 0 chr13 28758485 28758562 -90986336 + L1MC2 LINE L1 5375 5462 -871 4695 150 36 6 chr13 28758606 28759458 -90985440 + L1MC2 LINE L1 5456 6333 -11 183 80 0 0 chr13 28762699 28762724 -90982174 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 282 73 0 0 chr13 28762780 28762821 -90982077 + (TG)n Simple_repeat Simple_repeat 1 41 0 265 105 0 0 chr13 28762839 28762877 -90982021 + Alu SINE Alu 1 38 -265 351 0 0 0 chr13 28762917 28762956 -90981942 + (TG)n Simple_repeat Simple_repeat 2 40 0 222 91 0 0 chr13 28763000 28763033 -90981865 + (TG)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chr13 28763092 28763112 -90981786 + (TG)n Simple_repeat Simple_repeat 2 21 0 2140 99 14 7 chr13 28763132 28763448 -90981450 + AluSx SINE Alu 1 318 0 622 26 13 0 chr13 28763747 28763823 -90981075 - MADE1 DNA Mariner 0 80 4 916 127 35 14 chr13 28764751 28764893 -90980005 + AluSg/x SINE Alu 136 280 -32 2472 55 0 3 chr13 28766911 28767204 -90977694 - AluY SINE Alu -10 301 10 180 0 0 0 chr13 28767782 28767802 -90977096 + (A)n Simple_repeat Simple_repeat 1 20 0 432 228 187 53 chr13 28768326 28768738 -90976160 - L1MC4 LINE L1 -1 8041 7575 1430 293 42 15 chr13 28768760 28769503 -90975395 + L1ME3A LINE L1 4553 5315 -831 952 158 32 5 chr13 28769503 28769693 -90975205 + MER52A LTR ERV1 1510 1704 -51 481 230 102 40 chr13 28769707 28769933 -90974965 + L1ME3A LINE L1 5559 5798 -372 1934 148 33 41 chr13 28769933 28770241 -90974657 + MLT1B LTR MaLR 1 307 -83 17241 27 0 1 chr13 28770241 28773067 -90971831 + L1PA3 LINE L1 3326 6152 -3 1934 148 33 41 chr13 28773067 28773149 -90971749 + MLT1B LTR MaLR 307 388 -2 406 201 41 1 chr13 28773208 28773321 -90971577 + L1ME3A LINE L1 5833 5949 -221 2258 75 0 7 chr13 28774302 28774594 -90970304 + AluY SINE Alu 1 290 -21 476 215 185 8 chr13 28774841 28774971 -90969927 + MIR SINE MIR 100 252 -10 207 0 0 0 chr13 28775337 28775360 -90969538 + (TA)n Simple_repeat Simple_repeat 2 24 0 606 260 127 10 chr13 28775604 28776086 -90968812 + MLT1G1 LTR MaLR 5 583 -12 22 56 0 0 chr13 28776287 28776323 -90968575 + AT_rich Low_complexity Low_complexity 1 36 0 218 325 60 96 chr13 28776469 28776771 -90968127 + L2 LINE L2 2982 3272 0 2156 135 0 0 chr13 28777310 28777613 -90967285 + AluSx SINE Alu 1 303 -9 2052 139 3 7 chr13 28777820 28778130 -90966768 - AluSx SINE Alu -2 310 2 289 276 31 16 chr13 28778349 28778476 -90966422 + L1ME2 LINE L1 35 163 -6233 337 310 78 31 chr13 28778562 28778691 -90966207 + L1ME2 LINE L1 790 924 -5472 544 273 16 38 chr13 28778705 28778831 -90966067 - MLT1F LTR MaLR -8 534 412 1575 187 38 106 chr13 28778831 28778907 -90965991 + MLT2C2 LTR ERVL 1 81 -383 2076 146 3 0 chr13 28778907 28779208 -90965690 + AluSp SINE Alu 6 307 -6 1575 187 38 106 chr13 28779208 28779629 -90965269 + MLT2C2 LTR ERVL 81 464 0 544 273 16 38 chr13 28779629 28779685 -90965213 - MLT1F LTR MaLR -130 412 356 2501 235 64 50 chr13 28779706 28779943 -90964955 + L1ME2 LINE L1 2042 2274 -3941 2089 129 0 7 chr13 28779943 28780245 -90964653 + AluSx SINE Alu 1 300 -12 2501 235 64 50 chr13 28780245 28780307 -90964591 + L1ME2 LINE L1 2274 2334 -3881 2363 61 0 10 chr13 28780307 28780600 -90964298 + AluY SINE Alu 18 307 -4 2501 235 64 50 chr13 28780600 28781393 -90963505 + L1ME2 LINE L1 2334 3136 -3079 1590 173 52 28 chr13 28781393 28781682 -90963216 + AluJo SINE Alu 1 296 -16 2501 235 64 50 chr13 28781682 28781964 -90962934 + L1ME2 LINE L1 3136 3413 -2802 1081 259 149 55 chr13 28781968 28782517 -90962381 + MLT2F LTR ERVL 5 605 -58 2816 205 133 9 chr13 28782628 28782780 -90962118 + L1ME2 LINE L1 4870 5002 -1231 351 0 0 0 chr13 28782780 28782819 -90962079 + (CA)n Simple_repeat Simple_repeat 2 40 0 2816 205 133 9 chr13 28782819 28783860 -90961038 + L1ME2 LINE L1 5002 6223 -10 1892 175 3 0 chr13 28783927 28784224 -90960674 + AluSx SINE Alu 1 298 -14 189 107 0 0 chr13 28784882 28784910 -90959988 + (T)n Simple_repeat Simple_repeat 1 28 0 323 219 0 41 chr13 28785461 28785534 -90959364 - AluSg/x SINE Alu -14 288 219 1715 205 0 0 chr13 28785882 28786185 -90958713 - AluJo SINE Alu -9 303 1 1821 150 65 109 chr13 28786513 28786570 -90958328 - Charlie1b DNA MER1_type -2238 523 465 1805 177 7 7 chr13 28786570 28786864 -90958034 + AluJb SINE Alu 1 294 -18 1821 150 65 109 chr13 28786864 28787347 -90957551 - Charlie1b DNA MER1_type -2296 465 7 205 349 94 9 chr13 28787362 28787468 -90957430 + L2 LINE L2 3198 3312 -1 317 234 13 0 chr13 28787923 28788000 -90956898 + L1MC5 LINE L1 7840 7917 -44 25 0 0 0 chr13 28788641 28788666 -90956232 + AT_rich Low_complexity Low_complexity 1 25 0 270 252 171 0 chr13 28789856 28789979 -90954919 + L2 LINE L2 1577 1720 -1594 4202 159 36 20 chr13 28789979 28791334 -90953564 + L1MA4 LINE L1 4888 6298 -7 858 242 51 142 chr13 28791918 28792275 -90952623 + MER21B LTR ERV1 24 412 -451 2041 154 68 39 chr13 28792275 28792690 -90952208 - MSTB1 LTR MaLR -2 430 4 858 242 51 142 chr13 28792690 28792901 -90951997 + MER21B LTR ERV1 412 480 -383 1639 212 66 7 chr13 28792901 28793311 -90951587 - Tigger2a DNA MER2_type 0 434 1 858 242 51 142 chr13 28793311 28793520 -90951378 + MER21B LTR ERV1 480 706 -157 554 344 69 43 chr13 28793530 28794152 -90950746 + L2 LINE L2 2438 3082 -190 225 327 140 37 chr13 28794258 28794365 -90950533 + L2 LINE L2 3143 3260 -12 807 233 73 5 chr13 28795374 28795580 -90949318 - MIR SINE MIR -41 221 2 335 260 52 10 chr13 28796082 28796178 -90948720 + MIR3 SINE MIR 100 199 -9 2003 155 0 0 chr13 28796260 28796557 -90948341 + AluSx SINE Alu 1 297 -15 2290 107 0 0 chr13 28796818 28797116 -90947782 - AluSc SINE Alu -11 298 1 22 0 0 0 chr13 28798312 28798334 -90946564 + AT_rich Low_complexity Low_complexity 1 22 0 376 324 69 6 chr13 28799521 28799694 -90945204 - L2 LINE L2 -11 3302 3119 184 377 9 9 chr13 28799821 28799927 -90944971 - MIR SINE MIR -57 151 46 218 322 92 11 chr13 28800415 28800502 -90944396 - MIR SINE MIR -76 132 39 496 345 142 12 chr13 28800557 28800887 -90944011 + L3 LINE CR1 1081 1453 -124 5296 46 8 3 chr13 28801061 28801716 -90943182 - L1PA7 LINE L1 0 6154 5497 14811 78 15 6 chr13 28801716 28804006 -90940892 + L1PA7 LINE L1 3171 5475 -697 941 236 94 9 chr13 28804072 28804305 -90940593 - MIR SINE MIR 0 262 10 599 206 90 13 chr13 28804551 28804706 -90940192 - L2 LINE L2 -5 3308 3142 * 867 262 86 11 chr13 28804699 28804966 -90939932 - L2 LINE L2 -353 2961 2675 1850 225 92 26 chr13 28805607 28805776 -90939122 + L1ME3A LINE L1 5329 5485 -685 2213 91 0 39 chr13 28805776 28805910 -90938988 + AluSq SINE Alu 2 140 -173 2443 64 0 0 chr13 28805910 28806206 -90938692 + AluY SINE Alu 1 296 -15 2213 91 0 39 chr13 28806206 28806378 -90938520 + AluSq SINE Alu 140 296 -17 1850 225 92 26 chr13 28806378 28806940 -90937958 + L1ME3A LINE L1 5485 6075 -95 2313 208 94 3 chr13 28806961 28807544 -90937354 - MER63 DNA MER1_type 0 1060 425 2459 59 0 7 chr13 28807989 28808292 -90936606 + AluY SINE Alu 1 301 -10 1727 198 34 3 chr13 28808470 28808824 -90936074 + MLT1A1 LTR MaLR 1 365 0 238 351 53 0 chr13 28808870 28808964 -90935934 + L2 LINE L2 3210 3308 -5 366 330 144 9 chr13 28809205 28809420 -90935478 + MIR SINE MIR 4 247 -15 186 266 0 78 chr13 28809525 28809589 -90935309 + MIR SINE MIR 88 146 -62 226 279 73 30 chr13 28809607 28809772 -90935126 + MER112 DNA MER1_type 1 172 -88 2224 113 0 13 chr13 28809869 28810179 -90934719 - AluSx SINE Alu -6 306 1 1686 86 9 9 chr13 28810594 28810816 -90934082 + AluY SINE Alu 81 302 -9 432 263 132 0 chr13 28811036 28811188 -90933710 + MIR SINE MIR 77 248 -14 201 154 0 0 chr13 28812755 28812794 -90932104 + A-rich Low_complexity Low_complexity 2 40 0 189 107 0 0 chr13 28813823 28813851 -90931047 + (A)n Simple_repeat Simple_repeat 1 28 0 846 222 40 79 chr13 28815489 28815582 -90929316 - L1M4 LINE L1 -871 5275 5180 381 121 45 0 chr13 28815582 28815648 -90929250 - L1PA11 LINE L1 -3 6171 6103 846 222 40 79 chr13 28815648 28815982 -90928916 - L1M4 LINE L1 -966 5180 4865 2052 148 0 0 chr13 28816190 28816488 -90928410 + AluSx SINE Alu 1 298 -14 40581 34 23 2 chr13 28816491 28822515 -90922383 + L1PA3 LINE L1 1 6151 -4 216 122 0 0 chr13 28822518 28822559 -90922339 + (A)n Simple_repeat Simple_repeat 1 41 0 2295 107 0 3 chr13 28822861 28823169 -90921729 + AluSp SINE Alu 1 307 -6 1787 120 50 0 chr13 28823175 28823434 -90921464 - AluSx SINE Alu -40 272 1 22 0 0 0 chr13 28823516 28823538 -90921360 + AT_rich Low_complexity Low_complexity 1 22 0 26 88 0 0 chr13 28823568 28823636 -90921262 + AT_rich Low_complexity Low_complexity 1 68 0 1113 277 127 34 chr13 28824785 28825524 -90919374 + L1MEd LINE L1 442 1249 -5281 320 282 184 29 chr13 28825624 28825830 -90919068 + L1MEd LINE L1 1712 1949 -4591 985 241 44 102 chr13 28825979 28826186 -90918712 - L2 LINE L2 0 3313 3140 8471 21 14 276 chr13 28826186 28828059 -90916839 + SVA Other Other 3 1384 -2 985 241 44 102 chr13 28828059 28828262 -90916636 - L2 LINE L2 -173 3140 2927 623 265 71 10 chr13 28828242 28828438 -90916460 - MIR SINE MIR -3 259 52 * 2238 111 91 38 chr13 28828438 28828836 -90916062 - MSTA LTR MaLR -9 419 1 231 114 0 0 chr13 28828998 28829033 -90915865 + (A)n Simple_repeat Simple_repeat 1 35 0 2466 88 0 0 chr13 28829250 28829557 -90915341 + AluSg SINE Alu 1 307 -3 1529 262 112 9 chr13 28829998 28830560 -90914338 + L2 LINE L2 1359 1978 -1336 500 245 57 25 chr13 28830556 28830715 -90914183 + MIR SINE MIR 97 260 -2 * 205 306 102 20 chr13 28831092 28831190 -90913708 + L2 LINE L2 3183 3288 -25 242 314 118 0 chr13 28831228 28831330 -90913568 - MIR SINE MIR -65 143 30 1241 120 42 25 chr13 28831754 28831995 -90912903 + L1MA9 LINE L1 5544 5788 -524 396 138 0 0 chr13 28832014 28832079 -90912819 + (CA)n Simple_repeat Simple_repeat 1 65 0 385 171 267 0 chr13 28832079 28832184 -90912714 + L1MA9 LINE L1 5789 5921 -391 2267 162 32 5 chr13 28832218 28832620 -90912278 - MSTB LTR MaLR -13 413 1 2027 137 37 8 chr13 28832620 28833001 -90911897 + L1MA9 LINE L1 5916 6307 -5 21 0 0 0 chr13 28833332 28833353 -90911545 + AT_rich Low_complexity Low_complexity 1 21 0 189 74 0 0 chr13 28833649 28833676 -90911222 + (A)n Simple_repeat Simple_repeat 1 27 0 459 254 48 38 chr13 28833909 28834169 -90910729 + MIR SINE MIR 3 228 -34 487 270 72 2 chr13 28834457 28834609 -90910289 - MIR SINE MIR -62 146 10 2816 13 0 0 chr13 28834834 28835144 -90909754 + AluYa5 SINE Alu 1 310 -1 218 310 69 103 chr13 28836345 28836461 -90908437 - L2 LINE L2 -1 3271 3160 968 148 65 0 chr13 28838130 28838285 -90906613 + FRAM SINE Alu 1 40 0 577 209 19 0 chr13 28838897 28839002 -90905896 + U6 snRNA snRNA 1 107 0 23 54 0 0 chr13 28839157 28839194 -90905704 + AT_rich Low_complexity Low_complexity 1 37 0 1874 178 0 9 chr13 28839488 28839803 -90905095 + AluJo SINE Alu 1 312 0 2599 58 0 3 chr13 28839805 28840117 -90904781 + AluY SINE Alu 1 311 0 2363 102 3 0 chr13 28840120 28840424 -90904474 + AluSg SINE Alu 1 305 -5 1903 142 57 0 chr13 28841010 28841292 -90903606 - AluSx SINE Alu -14 298 1 1933 135 76 22 chr13 28842402 28842758 -90902140 + THE1C LTR MaLR 1 375 0 10632 111 35 36 chr13 28842758 28844338 -90900560 + THE1C-int LTR MaLR 1 1578 -2 2069 113 85 25 chr13 28844340 28844694 -90900204 + THE1C LTR MaLR 1 375 0 758 243 30 24 chr13 28844936 28844964 -90899934 + L1M4 LINE L1 3027 3053 -3093 12399 172 64 7 chr13 28844964 28847253 -90897645 - Cheshire DNA MER1_type 0 2420 1 758 243 30 24 chr13 28847253 28847553 -90897345 + L1M4 LINE L1 3053 3357 -2789 4345 207 48 84 chr13 28847715 28848886 -90896012 + L1M4 LINE L1 3626 4733 -1413 2187 112 3 0 chr13 28848886 28849181 -90895717 + AluSp SINE Alu 1 296 -17 4345 207 48 84 chr13 28849181 28849490 -90895408 + L1M4 LINE L1 4733 5052 -1094 988 237 57 16 chr13 28849509 28849754 -90895144 - LTR40a LTR ERVL -157 362 108 1872 242 117 31 chr13 28849756 28850433 -90894465 - HAL1 LINE L1 -678 1829 1095 679 186 138 38 chr13 28850437 28850647 -90894251 - L1ME3 LINE L1 -1 6161 5931 775 196 11 34 chr13 28850655 28850834 -90894064 - L1ME1 LINE L1 -5 6161 5987 11731 126 25 1 chr13 28850863 28852614 -90892284 + Tigger1 DNA MER2_type 1 1793 -625 829 163 0 0 chr13 28852618 28852747 -90892151 + FLAM_C SINE Alu 5 133 -10 1930 102 30 16 chr13 28852747 28853051 -90891847 + Tigger1 DNA MER2_type 1781 2088 -330 876 165 0 0 chr13 28853054 28853187 -90891711 + FLAM_C SINE Alu 1 133 0 958 144 0 50 chr13 28854143 28854303 -90890595 + FRAM SINE Alu 23 174 -2 223 177 32 0 chr13 28854305 28854367 -90890531 + GA-rich Low_complexity Low_complexity 3 66 0 2130 114 29 54 chr13 28854369 28854518 -90890380 + Tigger1 DNA MER2_type 2078 2229 -189 4613 115 45 0 chr13 28854518 28855160 -90889738 + L1PA16 LINE L1 5488 6158 -8 2130 114 29 54 chr13 28855160 28855360 -90889538 + Tigger1 DNA MER2_type 2229 2418 0 864 202 71 0 chr13 28855361 28855544 -90889354 - L1ME1 LINE L1 -220 5946 5751 841 240 128 33 chr13 28855717 28856109 -90888789 + L1MEd LINE L1 815 1243 -4876 422 284 51 18 chr13 28856142 28856365 -90888533 + L1MEd LINE L1 1359 1584 -906 321 296 80 0 chr13 28856366 28856491 -90888407 + MIR SINE MIR 56 190 -72 2199 99 7 7 chr13 28858218 28858521 -90886377 + AluSq SINE Alu 1 303 -10 508 282 120 37 chr13 28858567 28858808 -90886090 - MIR SINE MIR 0 262 2 1729 172 0 10 chr13 28859009 28859305 -90885593 - AluJb SINE Alu -17 295 3 976 172 12 0 chr13 28860552 28860715 -90884183 + FRAM SINE Alu 1 164 -12 2293 107 0 0 chr13 28861401 28861700 -90883198 - AluSc SINE Alu -10 299 1 691 328 103 44 chr13 28861719 28862372 -90882526 + L2 LINE L2 2131 2821 -493 248 344 42 52 chr13 28862398 28862610 -90882288 + L2 LINE L2 2872 3081 -191 452 270 163 19 chr13 28862624 28862839 -90882059 + MIR SINE MIR 13 258 -4 285 255 122 10 chr13 28862911 28863009 -90881889 + L2 LINE L2 3205 3313 0 23 54 0 0 chr13 28863386 28863423 -90881475 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr13 28864527 28864549 -90880349 + (CCG)n Simple_repeat Simple_repeat 1 22 0 359 317 118 14 chr13 28865192 28865413 -90879485 + MIR SINE MIR 16 259 -3 669 216 124 11 chr13 28865413 28865598 -90879300 + L1ME3 LINE L1 5949 6154 -8 287 244 81 12 chr13 28865630 28865716 -90879182 - MIR3 SINE MIR -6 202 111 2438 125 34 0 chr13 28866503 28866855 -90878043 + THE1B LTR MaLR 1 364 0 825 239 221 28 chr13 28868812 28869202 -90875696 + LTR50 LTR ERVL 1 465 -330 659 218 51 20 chr13 28869212 28869409 -90875489 + LTR33A LTR ERVL 319 521 -2 297 317 117 20 chr13 28871464 28871911 -90872987 - L1ME1 LINE L1 -217 5949 5446 1563 148 32 25 chr13 28872025 28872308 -90872590 - MLT1E LTR MaLR -2 591 307 597 292 67 46 chr13 28872454 28872800 -90872098 + L2 LINE L2 2920 3272 0 2643 51 0 3 chr13 28873065 28873377 -90871521 - AluY SINE Alu 0 311 1 508 253 39 19 chr13 28873989 28874143 -90870755 - MIR SINE MIR -53 209 53 277 337 12 12 chr13 28874170 28874256 -90870642 + MIR SINE MIR 30 115 -93 1751 126 52 15 chr13 28874274 28874545 -90870353 - AluJo SINE Alu -31 281 1 200 216 26 163 chr13 28874547 28874597 -90870301 + MIR SINE MIR 102 157 -105 2369 84 0 7 chr13 28874597 28874893 -90870005 + AluSc SINE Alu 1 294 -15 200 216 26 163 chr13 28874893 28874995 -90869903 + MIR SINE MIR 157 233 -29 766 217 29 11 chr13 28875209 28875384 -90869514 + MER5B DNA MER1_type 1 178 0 32 26 0 0 chr13 28875956 28875995 -90868903 + AT_rich Low_complexity Low_complexity 1 39 0 583 309 60 0 chr13 28877013 28877230 -90867668 + MIR SINE MIR 33 262 0 21 0 0 0 chr13 28877269 28877290 -90867608 + AT_rich Low_complexity Low_complexity 1 21 0 234 200 15 31 chr13 28878376 28878441 -90866457 + L1ME1 LINE L1 6110 6178 0 180 211 0 26 chr13 28878750 28878788 -90866110 + L3 LINE CR1 1521 1557 -20 392 197 114 68 chr13 28878867 28878999 -90865899 + MER5A DNA MER1_type 3 140 -49 2305 99 0 3 chr13 28879421 28879724 -90865174 - AluSx SINE Alu -10 302 1 244 241 13 38 chr13 28879790 28879869 -90865029 - L3 LINE CR1 -43 1534 1458 303 306 73 114 chr13 28879983 28880326 -90864572 + L2 LINE L2 2944 3272 0 318 343 33 33 chr13 28880698 28880908 -90863990 - L2 LINE L2 -674 2640 2431 255 284 52 52 chr13 28880957 28881073 -90863825 + L2 LINE L2 3153 3268 -4 180 77 0 0 chr13 28881296 28881322 -90863576 + (T)n Simple_repeat Simple_repeat 1 26 0 272 296 0 23 chr13 28882277 28882365 -90862533 + L1ME LINE L1 376 461 -5935 1559 222 67 61 chr13 28882972 28883891 -90861007 + L1ME LINE L1 789 1882 -4524 649 239 32 21 chr13 28883900 28884088 -90860810 + L1ME1 LINE L1 5873 6062 -104 2176 88 17 10 chr13 28884867 28885162 -90859736 + AluY SINE Alu 1 297 -14 203 330 46 28 chr13 28885182 28885291 -90859607 + L2 LINE L2 3203 3313 0 387 267 43 0 chr13 28885676 28885792 -90859106 - MER103 DNA DNA -10 156 36 232 121 0 0 chr13 28885887 28885920 -90858978 - MER3 DNA MER1_type -160 49 17 504 258 88 32 chr13 28885924 28886141 -90858757 - L1ME2 LINE L1 -147 6017 5789 183 113 57 0 chr13 28886162 28886215 -90858683 + (TA)n Simple_repeat Simple_repeat 1 56 0 1402 167 13 0 chr13 28886220 28886454 -90858444 - L1ME2 LINE L1 -378 5786 5550 306 241 0 0 chr13 28886505 28886559 -90858339 + MIR3 SINE MIR 132 185 -23 1933 136 0 43 chr13 28887096 28887420 -90857478 - AluJb SINE Alu -2 310 1 1745 221 42 53 chr13 28887420 28887731 -90857167 + LTR40a LTR ERVL 31 337 -182 2788 10 0 0 chr13 28887731 28888033 -90856865 - AluYa5 SINE Alu -9 302 1 1745 221 42 53 chr13 28888033 28888215 -90856683 + LTR40a LTR ERVL 337 519 0 1652 164 35 60 chr13 28889446 28889843 -90855055 + MLT1B LTR MaLR 4 390 0 516 279 152 25 chr13 28890374 28890657 -90854241 + L1MC5 LINE L1 7604 7922 -39 741 179 8 22 chr13 28890666 28890800 -90854098 + FLAM_A SINE Alu 1 132 -1 361 259 56 1 chr13 28890858 28891016 -90853882 - MER69 DNA AcHobo 0 2526 1 801 228 23 66 chr13 28891069 28891372 -90853526 - L1MC5 LINE L1 -30 7931 7642 1418 197 65 49 chr13 28891481 28891912 -90852986 - L1MC5 LINE L1 -335 7626 7189 228 260 26 26 chr13 28892599 28892676 -90852222 + MLT1L LTR MaLR 1 77 -538 352 204 133 91 chr13 28892748 28893006 -90851892 + MLT1J LTR MaLR 234 440 -71 2089 106 13 3 chr13 28893142 28893443 -90851455 + AluSx SINE Alu 1 304 -8 408 283 22 0 chr13 28893443 28893535 -90851363 + L1MC4 LINE L1 6615 6708 -1334 352 193 2 0 chr13 28893991 28894062 -90850836 + HsTC2 DNA Tc2 17 88 -1810 415 166 237 43 chr13 28894156 28894295 -90850603 + MER103 DNA DNA 1 166 0 266 222 19 0 chr13 28894804 28894858 -90850040 + MER5B DNA MER1_type 121 175 -3 310 275 132 47 chr13 28895027 28895285 -90849613 - L2 LINE L2 -839 2475 2196 526 301 29 1 chr13 28895347 28895543 -90849355 + MIR SINE MIR 30 229 -33 197 374 60 40 chr13 28895706 28895955 -90848943 + L3 LINE CR1 343 596 -981 209 271 29 0 chr13 28896303 28896373 -90848525 + GA-rich Low_complexity Low_complexity 2 73 0 439 247 10 10 chr13 28896460 28896557 -90848341 - L2 LINE L2 -11 3302 3206 419 277 258 37 chr13 28896560 28896936 -90847962 + L2 LINE L2 2091 2549 -765 1829 176 6 35 chr13 28897247 28897594 -90847304 - MER58B DNA MER1_type -3 338 2 203 328 82 70 chr13 28898048 28898219 -90846679 + L3b LINE CR1 1397 1569 -14 388 274 72 13 chr13 28899375 28899528 -90845370 - MIR SINE MIR -80 182 21 531 277 107 81 chr13 28900035 28900382 -90844516 - L1ME4a LINE L1 -60 6061 5706 249 83 0 0 chr13 28900713 28900749 -90844149 + (TCTCC)n Simple_repeat Simple_repeat 4 39 0 1733 194 0 0 chr13 28900754 28901064 -90843834 - AluJb SINE Alu -2 310 1 810 258 92 50 chr13 28901151 28901287 -90843611 + L1ME4a LINE L1 5479 5608 -513 1859 122 3 11 chr13 28901287 28901607 -90843291 + AluSx SINE Alu 1 318 0 810 258 92 50 chr13 28901607 28902024 -90842874 + L1ME4a LINE L1 5608 6056 -65 1536 209 111 55 chr13 28902537 28903050 -90841848 - MLT1F LTR MaLR 0 542 1 2377 143 27 48 chr13 28903906 28904347 -90840551 + MSTB1 LTR MaLR 1 432 0 1101 136 0 6 chr13 28904854 28905016 -90839882 + FRAM SINE Alu 4 164 -2 1959 131 24 0 chr13 28905278 28905569 -90839329 - AluSx SINE Alu -14 298 1 591 276 86 35 chr13 28905850 28906082 -90838816 + MIR SINE MIR 19 262 0 248 136 0 0 chr13 28906226 28906270 -90838628 + MADE1 DNA Mariner 1 44 -36 2206 93 0 0 chr13 28906290 28906580 -90838318 - AluSx SINE Alu -22 290 1 196 311 19 66 chr13 28906891 28906997 -90837901 + MIR SINE MIR 117 217 -45 1857 133 30 13 chr13 28907151 28907451 -90837447 + AluSx SINE Alu 1 305 -7 1696 204 31 64 chr13 28907866 28908021 -90836877 - MER63B DNA MER1_type -626 436 277 2008 117 3 0 chr13 28908021 28908324 -90836574 + AluSx SINE Alu 1 304 0 1696 204 31 64 chr13 28908324 28908439 -90836459 - MER63B DNA MER1_type -785 277 160 1721 167 101 12 chr13 28908439 28908494 -90836404 - MER47A DNA MER2_type -1957 366 317 2084 141 0 3 chr13 28908494 28908807 -90836091 + AluSx SINE Alu 1 312 0 1721 167 101 12 chr13 28908807 28909087 -90835811 - MER47A DNA MER2_type -2006 317 1 1696 204 31 64 chr13 28909087 28909264 -90835634 - MER63B DNA MER1_type -902 160 1 490 249 98 108 chr13 28909266 28909675 -90835223 + HAL1 LINE L1 101 505 -2002 1029 189 159 0 chr13 28909750 28909983 -90834915 - AluJo SINE Alu -38 274 5 1337 245 153 30 chr13 28910007 28910819 -90834079 + HAL1 LINE L1 579 2172 -335 436 215 8 99 chr13 28910844 28911031 -90833867 + MER104 DNA Tc2 14 177 -3 363 248 137 72 chr13 28911067 28911329 -90833569 + HAL1 LINE L1 2227 2505 -2 1684 141 19 56 chr13 28911341 28911661 -90833237 + AluSx SINE Alu 1 308 -4 318 230 40 0 chr13 28913698 28913772 -90831126 - AluJ/FRAM SINE Alu 0 302 226 807 153 73 0 chr13 28913775 28913912 -90830986 + AluJo/FRAM SINE Alu 136 282 -30 1727 158 3 26 chr13 28913925 28914236 -90830662 + AluJb SINE Alu 1 304 -8 250 175 0 0 chr13 28914237 28914277 -90830621 - AluJo/FLAM SINE Alu -178 124 85 1181 180 14 9 chr13 28914278 28914495 -90830403 - AluJo SINE Alu -94 218 1 219 36 0 0 chr13 28914749 28914777 -90830121 + (CAGCC)n Simple_repeat Simple_repeat 5 32 0 357 328 55 0 chr13 28915003 28915131 -90829767 + L3 LINE CR1 1191 1325 -252 1823 158 0 3 chr13 28915231 28915528 -90829370 + AluJb SINE Alu 1 296 -16 297 209 0 0 chr13 28915529 28915596 -90829302 + (CATA)n Simple_repeat Simple_repeat 2 68 0 799 280 76 20 chr13 28915694 28916051 -90828847 - L1MC4a LINE L1 -1858 5950 5574 373 345 107 10 chr13 28916055 28916252 -90828646 + L3 LINE CR1 1351 1566 -11 324 103 73 0 chr13 28916271 28916339 -90828559 - L1MA8 LINE L1 0 6291 6219 545 327 75 53 chr13 28916802 28917163 -90827735 - L3 LINE CR1 -128 1449 1081 266 202 183 39 chr13 28917519 28917623 -90827275 + LTR67 LTR ERVL 432 550 -7 208 337 48 12 chr13 28917665 28917748 -90827150 - L3 LINE CR1 -647 930 845 2154 114 3 0 chr13 28918533 28918839 -90826059 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr13 28918900 28918925 -90825973 + AT_rich Low_complexity Low_complexity 1 25 0 1303 157 124 15 chr13 28919523 28919797 -90825101 + AluJo SINE Alu 1 304 -8 297 304 62 9 chr13 28920452 28920564 -90824334 - MIR SINE MIR -94 168 51 661 254 98 5 chr13 28920569 28920774 -90824124 - L1ME2 LINE L1 -1 6163 5940 301 271 35 12 chr13 28921582 28921667 -90823231 + MER63 DNA MER1_type 1 713 -349 24 0 0 0 chr13 28922390 28922414 -90822484 + AT_rich Low_complexity Low_complexity 1 24 0 1221 156 24 0 chr13 28922414 28922619 -90822279 - L1MA6 LINE L1 -4 6296 6087 225 255 20 0 chr13 28923052 28923103 -90821795 - L2 LINE L2 -86 3227 3176 * 641 243 101 77 chr13 28923095 28923342 -90821556 - MIR SINE MIR 0 262 10 304 226 32 0 chr13 28923474 28923536 -90821362 + L3 LINE CR1 1423 1486 -91 2026 137 0 3 chr13 28923635 28923942 -90820956 - AluSx SINE Alu -6 306 1 234 0 0 0 chr13 28924079 28924105 -90820793 + (TA)n Simple_repeat Simple_repeat 2 27 0 1947 124 7 10 chr13 28924578 28924877 -90820021 + AluSx SINE Alu 1 298 -14 2292 100 0 0 chr13 28925383 28925693 -90819205 + AluSx SINE Alu 1 310 -2 374 370 93 18 chr13 28926116 28926513 -90818385 + L2 LINE L2 2289 2715 -599 850 191 6 0 chr13 28926513 28926670 -90818228 + FRAM SINE Alu 1 157 -19 1962 130 3 3 chr13 28926761 28927069 -90817829 + AluSx SINE Alu 1 308 -4 1111 200 74 13 chr13 28928153 28928383 -90816515 + MIR SINE MIR 19 262 0 229 167 24 0 chr13 28928418 28928460 -90816438 - MIR SINE MIR -117 145 103 2359 54 0 7 chr13 28929986 28930283 -90814615 + AluY SINE Alu 1 295 -16 260 222 197 34 chr13 28931148 28931265 -90813633 + L2 LINE L2 3161 3296 -17 21 0 0 0 chr13 28931267 28931288 -90813610 + AT_rich Low_complexity Low_complexity 1 21 0 238 279 233 16 chr13 28931494 28931623 -90813275 - MIR SINE MIR -72 190 34 486 79 0 0 chr13 28931831 28931907 -90812991 + (TC)n Simple_repeat Simple_repeat 1 76 0 1792 124 3 35 chr13 28931912 28932202 -90812696 - AluJo SINE Alu -31 281 1 2840 137 22 26 chr13 28932326 28932817 -90812081 - Tigger5 DNA MER2_type 0 2323 1835 576 228 16 79 chr13 28932815 28932952 -90811946 - Tigger5 DNA MER2_type -2103 220 97 * 2249 87 0 3 chr13 28932952 28933250 -90811648 - AluSc SINE Alu -12 297 1 576 228 16 79 chr13 28933250 28933301 -90811597 - Tigger5 DNA MER2_type -2226 97 44 274 216 99 99 chr13 28934218 28934317 -90810581 + LTR67 LTR ERVL 373 474 -83 1039 178 50 0 chr13 28934317 28934497 -90810401 + MER5A DNA MER1_type 1 189 0 274 216 99 99 chr13 28934497 28934578 -90810320 + LTR67 LTR ERVL 473 553 -4 237 229 200 0 chr13 28934689 28934829 -90810069 - Charlie7 DNA MER1_type -2 2610 2443 216 200 0 0 chr13 28935024 28935069 -90809829 + (TAA)n Simple_repeat Simple_repeat 2 46 0 417 222 214 0 chr13 28935095 28935221 -90809677 - MIR SINE MIR -71 191 39 395 355 52 0 chr13 28935235 28935407 -90809491 - L2 LINE L2 -863 2451 2271 637 211 9 0 chr13 28935509 28935623 -90809275 + FRAM SINE Alu 1 115 -61 272 133 0 0 chr13 28935696 28935741 -90809157 + Alu SINE Alu 253 297 -5 629 272 36 44 chr13 28935905 28936155 -90808743 + MIR SINE MIR 15 262 0 3061 204 44 29 chr13 28936481 28937371 -90807527 + L1ME1 LINE L1 4697 5593 -621 1999 120 0 26 chr13 28937371 28937679 -90807219 + AluSx SINE Alu 1 300 -12 3061 204 44 29 chr13 28937679 28937855 -90807043 + L1ME1 LINE L1 5593 5765 -449 1113 185 186 42 chr13 28937855 28938272 -90806626 - MER66B LTR ERV1 0 486 97 1250 214 80 29 chr13 28938306 28938655 -90806243 + L1ME1 LINE L1 5744 6110 -56 1849 174 27 49 chr13 28938655 28938689 -90806209 - MLT1B LTR MaLR -31 359 326 1938 112 25 0 chr13 28938689 28938967 -90805931 - AluSx SINE Alu -27 285 1 1849 174 27 49 chr13 28938967 28939299 -90805599 - MLT1B LTR MaLR -64 326 1 1870 114 26 49 chr13 28939489 28939769 -90805129 + AluSx SINE Alu 5 287 -25 226 0 0 0 chr13 28939769 28939794 -90805104 + (TAAA)n Simple_repeat Simple_repeat 2 136 0 1870 114 26 49 chr13 28939794 28939820 -90805078 + AluSx SINE Alu 287 312 0 485 323 58 35 chr13 28940651 28940877 -90804021 - MIR SINE MIR -12 250 20 2232 89 0 0 chr13 28941009 28941300 -90803598 - AluSx SINE Alu -21 291 1 385 283 57 25 chr13 28941368 28941527 -90803371 + L1MD3 LINE L1 7808 7971 -24 1234 66 0 0 chr13 28941529 28941680 -90803218 + AluSq/x SINE Alu 1 151 -162 7109 50 5 8 chr13 28941783 28943231 -90801667 + L1PA6 LINE L1 4674 6144 -10 718 160 0 73 chr13 28943523 28943673 -90801225 + FLAM_C SINE Alu 5 143 0 377 45 0 0 chr13 28944049 28944093 -90800805 + AluSp SINE Alu 108 151 -152 243 88 0 0 chr13 28944094 28944128 -90800770 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2107 116 0 3 chr13 28944135 28944438 -90800460 - AluSx SINE Alu -9 303 2 279 237 26 0 chr13 28944519 28944595 -90800303 + MIR SINE MIR 44 121 -87 3264 258 125 28 chr13 28944672 28946043 -90798855 + HAL1 LINE L1 1 1504 -1003 1694 159 3 41 chr13 28946060 28946424 -90798474 + AluJo SINE Alu 1 352 0 629 153 10 0 chr13 28946514 28946612 -90798286 + FLAM_C SINE Alu 24 122 -21 25 31 0 0 chr13 28946613 28946645 -90798253 + AT_rich Low_complexity Low_complexity 1 32 0 2586 35 0 9 chr13 28946648 28946966 -90797932 + AluYb8 SINE Alu 1 315 -3 207 0 0 0 chr13 28946982 28947005 -90797893 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2093 107 3 0 chr13 28947161 28947470 -90797428 + AluSp SINE Alu 1 310 0 1995 142 3 0 chr13 28947566 28947875 -90797023 + AluSq SINE Alu 1 310 -3 248 77 26 0 chr13 28947875 28947914 -90796984 + (GGA)n Simple_repeat Simple_repeat 1 40 0 1422 236 60 21 chr13 28947914 28948295 -90796603 + L1MD3 LINE L1 7591 7986 -9 2061 108 24 0 chr13 28949742 28950029 -90794869 + AluSx SINE Alu 3 296 -16 1794 166 0 3 chr13 28950154 28950461 -90794437 + AluJb SINE Alu 1 306 -6 1919 157 0 6 chr13 28950610 28950923 -90793975 - AluSx SINE Alu -1 311 1 621 214 132 6 chr13 28950924 28951083 -90793815 - MIR SINE MIR -76 186 8 377 205 154 0 chr13 28951342 28951420 -90793478 + MER20 DNA MER1_type 1 90 -129 555 153 0 0 chr13 28951428 28951513 -90793385 - AluS SINE Alu -226 86 2 21 0 0 0 chr13 28951515 28951536 -90793362 + AT_rich Low_complexity Low_complexity 1 21 0 327 119 0 0 chr13 28951966 28952008 -90792890 + MER20 DNA MER1_type 178 219 0 412 309 50 40 chr13 28952698 28952899 -90791999 + MIR SINE MIR 35 237 -25 1640 267 127 24 chr13 28953166 28953478 -90791420 + MER69 DNA AcHobo 2 280 -2246 1721 172 3 7 chr13 28953478 28953775 -90791123 - AluJb SINE Alu -14 298 3 1640 267 127 24 chr13 28953775 28954054 -90790844 + MER69 DNA AcHobo 280 654 -1872 413 191 134 9 chr13 28954053 28954243 -90790655 + MER69 DNA AcHobo 2238 2525 -1 * 1835 98 68 11 chr13 28954268 28954534 -90790364 - AluSx SINE Alu -13 299 19 22 0 0 0 chr13 28956306 28956328 -90788570 + AT_rich Low_complexity Low_complexity 1 22 0 938 181 62 5 chr13 28956790 28956911 -90787987 - L1PA13 LINE L1 0 6163 6043 2250 133 60 85 chr13 28956911 28957394 -90787504 - L1MB3 LINE L1 -158 6025 5555 1323 182 30 34 chr13 28957394 28957690 -90787208 - AluJo SINE Alu -17 295 1 2219 75 3 36 chr13 28957937 28958244 -90786654 + AluSx SINE Alu 1 297 -15 439 290 32 0 chr13 28959358 28959482 -90785416 + L2 LINE L2 3186 3313 0 867 120 0 0 chr13 28959565 28959682 -90785216 - FLAM_C SINE Alu -16 117 1 2145 97 0 10 chr13 28959901 28960200 -90784698 - AluSq SINE Alu -17 296 1 187 30 30 30 chr13 28960285 28960318 -90784580 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 1949 89 71 0 chr13 28960846 28961115 -90783783 + AluSc SINE Alu 5 292 -17 710 183 15 22 chr13 28962194 28962331 -90782567 + FLAM_A SINE Alu 1 136 -6 229 114 45 0 chr13 28962739 28962783 -90782115 - L2 LINE L2 0 3313 3268 438 297 163 29 chr13 28964210 28964419 -90780479 + MIR SINE MIR 16 252 -10 22 0 0 0 chr13 28964870 28964892 -90780006 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 28964957 28964979 -90779919 + AT_rich Low_complexity Low_complexity 1 22 0 2124 113 0 0 chr13 28965097 28965423 -90779475 + AluSg SINE Alu 1 326 0 1140 144 8 107 chr13 28966168 28966411 -90778487 - MER20 DNA MER1_type 0 219 1 264 59 0 0 chr13 28966590 28966624 -90778274 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2003 202 62 9 chr13 28967116 28967537 -90777361 - L1MD3 LINE L1 -13 7982 7540 304 197 91 0 chr13 28967559 28967625 -90777273 + MER112 DNA MER1_type 79 150 -110 2089 138 0 0 chr13 28967625 28967936 -90776962 - AluSx SINE Alu -1 311 1 1130 104 0 44 chr13 28967938 28968121 -90776777 + AluSq SINE Alu 98 272 -41 322 239 109 0 chr13 28968650 28968742 -90776156 - L2 LINE L2 -5 3267 3166 427 283 28 102 chr13 28968910 28969087 -90775811 - L2 LINE L2 -1 3271 3108 21 0 0 0 chr13 28969940 28969961 -90774937 + AT_rich Low_complexity Low_complexity 1 21 0 1845 125 11 3 chr13 28969962 28970249 -90774649 + AluSx SINE Alu 1 289 -23 446 48 0 16 chr13 28970254 28970316 -90774582 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 431 298 232 33 chr13 28970821 28971123 -90773775 - L3 LINE CR1 -7 1570 1209 2149 116 3 0 chr13 28971174 28971477 -90773421 + AluSx SINE Alu 1 304 -8 1783 143 0 31 chr13 28971488 28971807 -90773091 + AluJb SINE Alu 1 310 0 662 269 126 62 chr13 28971841 28972231 -90772667 - L2 LINE L2 -76 3237 2823 774 272 20 15 chr13 28972258 28972453 -90772445 - L3 LINE CR1 -399 1178 983 2196 78 0 32 chr13 28972515 28972823 -90772075 - AluSx SINE Alu -6 306 9 564 184 123 18 chr13 28972987 28973101 -90771797 - FLAM_A SINE Alu -7 126 1 1123 313 104 24 chr13 28973160 28973629 -90771269 - L3 LINE CR1 -708 869 363 2418 71 0 3 chr13 28973847 28974157 -90770741 - AluY SINE Alu -2 309 1 1690 130 75 77 chr13 28974328 28974704 -90770194 + THE1C LTR MaLR 1 375 0 22 56 0 0 chr13 28974708 28974744 -90770154 + AT_rich Low_complexity Low_complexity 1 36 0 5889 121 12 33 chr13 28974744 28975766 -90769132 - L1PA16 LINE L1 -9 6157 5155 2415 161 47 5 chr13 28975792 28976240 -90768658 - Charlie1b DNA MER1_type -22 501 35 2235 88 0 26 chr13 28976720 28977027 -90767871 + AluSx SINE Alu 1 299 -13 2033 95 28 0 chr13 28977038 28977322 -90767576 + AluSq SINE Alu 3 294 -19 491 307 0 7 chr13 28978504 28978644 -90766254 + MIR3 SINE MIR 63 201 -7 448 300 122 6 chr13 28980533 28980713 -90764185 + MIR SINE MIR 23 223 -39 205 220 0 51 chr13 28981439 28981498 -90763400 + G-rich Low_complexity Low_complexity 3 58 0 429 104 0 0 chr13 28982263 28982340 -90762558 + (CAGCC)n Simple_repeat Simple_repeat 3 79 0 216 163 0 0 chr13 28982345 28982388 -90762510 + (CGG)n Simple_repeat Simple_repeat 2 44 0 1684 134 57 3 chr13 28983299 28983582 -90761316 + AluJb SINE Alu 1 298 -14 470 271 132 40 chr13 28983918 28984221 -90760677 + MER102b DNA MER1_type 1 331 -10 200 351 107 18 chr13 28984483 28984651 -90760247 + MIR SINE MIR 21 203 -59 254 219 27 41 chr13 28984684 28984757 -90760141 + MIR SINE MIR 185 256 -6 1326 156 37 12 chr13 28984783 28985026 -90759872 - AluJo SINE Alu -61 251 3 232 270 40 40 chr13 28985061 28985135 -90759763 - MER5A DNA MER1_type -69 120 47 2042 94 35 3 chr13 28985711 28985999 -90758899 + AluSq SINE Alu 1 297 -16 2208 109 0 0 chr13 28985999 28986303 -90758595 + AluSq SINE Alu 1 304 -9 426 218 65 57 chr13 28986353 28986477 -90758421 - L2 LINE L2 -19 3294 3170 1939 124 0 13 chr13 28987488 28987787 -90757111 + AluSx SINE Alu 1 295 -17 1914 105 0 64 chr13 28988959 28989273 -90755625 + AluSq SINE Alu 1 294 -19 21 57 0 0 chr13 28989955 28989990 -90754908 + AT_rich Low_complexity Low_complexity 1 35 0 1871 136 19 32 chr13 28992183 28992493 -90752405 - AluJo SINE Alu -1 311 6 1657 204 0 17 chr13 28992985 28993284 -90751614 + AluJb SINE Alu 19 312 0 2433 94 0 0 chr13 28993342 28993649 -90751249 + AluSg SINE Alu 1 307 -3 255 339 52 0 chr13 28993698 28993813 -90751085 - L2 LINE L2 0 3272 3152 1876 168 0 9 chr13 28994009 28994315 -90750583 + AluJo SINE Alu 1 305 -7 354 23 0 0 chr13 28994315 28994358 -90750540 + (CCA)n Simple_repeat Simple_repeat 1 43 0 2215 114 3 0 chr13 28994671 28994970 -90749928 - AluSx SINE Alu -12 300 1 317 283 61 0 chr13 28995069 28995168 -90749730 + MIR3 SINE MIR 95 199 -9 200 246 18 0 chr13 28995448 28995505 -90749393 + (TA)n Simple_repeat Simple_repeat 1 58 0 242 246 35 0 chr13 28995560 28995617 -90749281 - MIR SINE MIR -10 252 194 2136 118 0 7 chr13 28996438 28996735 -90748163 + AluSx SINE Alu 1 295 -17 1703 166 13 23 chr13 28997955 28998257 -90746641 - AluJb SINE Alu -13 299 1 1033 154 59 0 chr13 28998257 28998426 -90746472 - FRAM SINE Alu -3 173 1 2032 152 0 0 chr13 28999195 28999497 -90745401 + AluJb SINE Alu 1 302 -10 647 251 31 44 chr13 28999647 28999874 -90745024 + MER58A DNA MER1_type 1 224 0 547 209 27 0 chr13 29000081 29000191 -90744707 - MER81 DNA DNA 0 114 2 438 296 89 12 chr13 29000196 29000365 -90744533 + MIR SINE MIR 11 192 -70 740 154 0 41 chr13 29000372 29000495 -90744403 + FLAM_C SINE Alu 2 119 -24 824 83 16 0 chr13 29000495 29000616 -90744282 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 2043 115 27 7 chr13 29000761 29001057 -90743841 + AluSx SINE Alu 1 302 -10 2332 92 20 3 chr13 29001845 29002148 -90742750 + AluSg SINE Alu 1 308 -2 529 214 103 7 chr13 29002451 29002596 -90742302 + MER5B DNA MER1_type 1 159 -19 505 113 0 0 chr13 29002610 29002690 -90742208 + FLAM_C SINE Alu 64 143 0 636 259 21 51 chr13 29002702 29002938 -90741960 - MIR SINE MIR -3 259 31 26 0 0 0 chr13 29003425 29003451 -90741447 + AT_rich Low_complexity Low_complexity 1 26 0 1818 157 13 13 chr13 29003497 29003797 -90741101 - AluJo SINE Alu -12 300 1 1566 69 5 0 chr13 29004801 29004990 -90739908 - AluSq SINE Alu -123 190 1 2278 90 7 7 chr13 29004991 29005291 -90739607 - AluSx SINE Alu -12 300 1 333 256 120 73 chr13 29006164 29006398 -90738500 + L2 LINE L2 3032 3276 -37 2648 58 3 0 chr13 29006683 29006995 -90737903 + AluSq SINE Alu 1 313 0 1082 184 0 0 chr13 29007317 29007491 -90737407 - FAM SINE Alu -1 174 1 193 28 0 56 chr13 29007961 29007997 -90736901 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2259 99 0 3 chr13 29008016 29008300 -90736598 - AluSq SINE Alu -30 283 1 824 218 0 24 chr13 29009066 29009236 -90735662 - FRAM SINE Alu 0 166 1 1905 156 7 0 chr13 29009271 29009586 -90735312 + AluJb SINE Alu 1 317 0 2279 96 0 25 chr13 29009787 29010101 -90734797 + AluSq SINE Alu 1 306 -7 1666 141 15 27 chr13 29010278 29010540 -90734358 + AluJo SINE Alu 37 295 -17 2132 130 0 3 chr13 29010726 29011033 -90733865 - AluSx SINE Alu -6 306 1 2194 92 0 7 chr13 29011147 29011469 -90733429 - AluSc SINE Alu 0 320 1 2201 110 7 3 chr13 29011590 29011898 -90733000 + AluSx SINE Alu 1 309 -3 469 245 75 107 chr13 29012565 29012860 -90732038 + L1ME4a LINE L1 5553 5856 -265 2274 92 3 0 chr13 29012860 29013164 -90731734 - AluSq SINE Alu 0 305 1 469 245 75 107 chr13 29013164 29013175 -90731723 + L1ME4a LINE L1 5856 5866 -255 1921 166 0 0 chr13 29013175 29013465 -90731433 - AluSx SINE Alu -22 290 1 469 245 75 107 chr13 29013465 29013585 -90731313 + L1ME4a LINE L1 5866 5967 -154 * 3005 157 26 8 chr13 29013579 29014109 -90730789 + L1MB4 LINE L1 5286 5825 -355 2374 62 41 0 chr13 29014111 29014402 -90730496 + AluY SINE Alu 1 303 -8 268 119 0 0 chr13 29014402 29014444 -90730454 + L1MB5 LINE L1 6133 6174 0 201 119 48 0 chr13 29014446 29014488 -90730410 + (TA)n Simple_repeat Simple_repeat 1 44 0 217 350 8 16 chr13 29015029 29015152 -90729746 + MIR3 SINE MIR 81 202 -6 2501 54 7 3 chr13 29015686 29015983 -90728915 - AluY SINE Alu -13 298 1 355 151 47 70 chr13 29016420 29016506 -90728392 + AluJ/FLAM SINE Alu 1 84 -218 599 126 0 0 chr13 29016773 29016892 -90728006 + (G)n Simple_repeat Simple_repeat 1 119 0 521 222 115 13 chr13 29017362 29017607 -90727291 + L1P5 LINE L1 5572 5848 -308 812 151 0 8 chr13 29017742 29017868 -90727030 - FLAM_C SINE Alu -7 126 2 559 208 30 0 chr13 29018017 29018118 -90726780 + FLAM_A SINE Alu 1 104 -38 2533 67 0 0 chr13 29018916 29019216 -90725682 - AluY SINE Alu -11 300 1 365 169 0 11 chr13 29021961 29022050 -90722848 + CT-rich Low_complexity Low_complexity 2 89 0 23 33 0 0 chr13 29024275 29024305 -90720593 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 29025164 29025186 -90719712 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 29025238 29025266 -90719632 + GC_rich Low_complexity Low_complexity 1 28 0 261 109 0 0 chr13 29025352 29025398 -90719500 + (TG)n Simple_repeat Simple_repeat 1 46 0 28 0 0 0 chr13 29025405 29025433 -90719465 + GC_rich Low_complexity Low_complexity 1 28 0 180 117 33 33 chr13 29025740 29025800 -90719098 + (CCG)n Simple_repeat Simple_repeat 3 62 0 36 0 0 0 chr13 29025854 29025890 -90719008 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr13 29026073 29026115 -90718783 + GC_rich Low_complexity Low_complexity 1 42 0 542 209 58 14 chr13 29028318 29028457 -90716441 + MIR SINE MIR 1 145 -117 2246 91 7 0 chr13 29028613 29028925 -90715973 - AluSq SINE Alu 0 313 1 2126 130 10 0 chr13 29029255 29029562 -90715336 - AluSx SINE Alu -2 310 1 1820 133 0 68 chr13 29029831 29030004 -90714894 - AluJb SINE Alu -10 302 119 189 0 0 0 chr13 29030004 29030025 -90714873 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2199 93 0 0 chr13 29030025 29030304 -90714594 - AluSc SINE Alu -30 279 1 1820 133 0 68 chr13 29030304 29030451 -90714447 - AluJb SINE Alu -191 121 3 571 142 239 0 chr13 29030453 29030566 -90714332 - AluJo SINE Alu -171 141 2 311 239 14 0 chr13 29030575 29030646 -90714252 + L2 LINE L2 3201 3272 0 2371 110 0 0 chr13 29031013 29031322 -90713576 - AluSx SINE Alu -1 311 3 216 0 0 0 chr13 29031324 29031348 -90713550 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 26 23 0 23 chr13 29031348 29031366 -90713532 + AT_rich Low_complexity Low_complexity 1 18 -25 2011 129 25 0 chr13 29031366 29031645 -90713253 - AluSg SINE Alu -24 286 1 26 23 0 23 chr13 29031645 29031670 -90713228 + AT_rich Low_complexity Low_complexity 18 43 0 2377 92 0 22 chr13 29031713 29032030 -90712868 - AluSq SINE Alu -3 310 1 2570 48 10 7 chr13 29032030 29032340 -90712558 - AluSq SINE Alu -2 311 1 26 23 0 23 chr13 29032934 29032959 -90711939 + AT_rich Low_complexity Low_complexity 1 26 -17 2040 125 25 0 chr13 29032959 29033238 -90711660 + AluSg SINE Alu 1 286 -24 26 23 0 23 chr13 29033238 29033256 -90711642 + AT_rich Low_complexity Low_complexity 26 43 0 216 0 0 0 chr13 29033256 29033280 -90711618 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1643 161 45 3 chr13 29033282 29033573 -90711325 + AluSx SINE Alu 3 305 -7 2158 130 0 0 chr13 29033602 29033910 -90710988 + AluSx SINE Alu 1 308 -4 1483 160 21 25 chr13 29034843 29035201 -90709697 + L1MB7 LINE L1 5451 5809 -375 1483 177 42 7 chr13 29035201 29035511 -90709387 + L1MB7 LINE L1 5864 6184 0 621 223 101 0 chr13 29035890 29036029 -90708869 + AluJo SINE Alu 121 273 -39 443 137 27 0 chr13 29036043 29036116 -90708782 - AluS SINE Alu -9 302 228 503 159 0 0 chr13 29036122 29036210 -90708688 - AluJ/FRAM SINE Alu -1 311 224 400 120 93 0 chr13 29036235 29036310 -90708588 - AluSc SINE Alu 0 309 228 180 0 0 0 chr13 29036310 29036330 -90708568 + (TC)n Simple_repeat Simple_repeat 2 21 0 529 69 28 0 chr13 29036330 29036402 -90708496 - Alu SINE Alu -16 295 222 189 0 0 0 chr13 29036402 29036423 -90708475 + (TC)n Simple_repeat Simple_repeat 2 22 0 451 97 111 0 chr13 29036423 29036495 -90708403 - AluJ/FRAM SINE Alu -10 302 223 1578 140 63 28 chr13 29036509 29036794 -90708104 - AluJb SINE Alu -15 297 3 1003 153 0 64 chr13 29036801 29037004 -90707894 + AluJo SINE Alu 110 299 -13 816 207 17 86 chr13 29037018 29037250 -90707648 + MER102a DNA MER1_type 104 319 -11 189 0 0 0 chr13 29037402 29037423 -90707475 + (T)n Simple_repeat Simple_repeat 1 21 0 1818 108 97 4 chr13 29037453 29037722 -90707176 - AluSx SINE Alu -18 294 1 403 253 79 75 chr13 29037801 29037870 -90707028 - MIR SINE MIR -9 253 186 1996 146 0 7 chr13 29037870 29038165 -90706733 + AluSx SINE Alu 6 298 -14 403 253 79 75 chr13 29038165 29038336 -90706562 - MIR SINE MIR -76 186 12 278 155 84 42 chr13 29038503 29038574 -90706324 + MER112 DNA MER1_type 78 151 -109 865 147 12 53 chr13 29039466 29039636 -90705262 + AluJb SINE Alu 129 291 -21 292 229 153 10 chr13 29039651 29039755 -90705143 + L1ME LINE L1 5689 5805 -316 1043 155 0 12 chr13 29039948 29040116 -90704782 - FRAM SINE Alu 0 166 1 1168 81 0 0 chr13 29040140 29040288 -90704610 - AluSg/x SINE Alu 0 312 165 686 250 52 48 chr13 29040871 29041119 -90703779 + MIR SINE MIR 14 262 0 183 129 0 0 chr13 29041565 29041596 -90703302 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 561 147 190 17 chr13 29041689 29041805 -90703093 - FLAM_A SINE Alu -6 136 1 203 295 0 16 chr13 29042006 29042067 -90702831 + CT-rich Low_complexity Low_complexity 3 62 0 1804 106 37 0 chr13 29043121 29043366 -90701532 - AluSx SINE Alu -11 301 48 206 250 0 0 chr13 29043526 29043566 -90701332 + polypyrimidine Low_complexity Low_complexity 5 44 0 433 233 212 42 chr13 29043714 29043903 -90700995 - MIR SINE MIR -6 256 36 23 0 0 0 chr13 29044024 29044047 -90700851 + AT_rich Low_complexity Low_complexity 1 23 0 1722 157 6 38 chr13 29044063 29044376 -90700522 - AluJo SINE Alu -9 303 1 249 324 7 20 chr13 29044598 29044746 -90700152 + L2 LINE L2 2431 2576 -738 1964 157 3 0 chr13 29044897 29045197 -90699701 - AluJb SINE Alu -11 301 1 884 150 0 0 chr13 29045871 29046004 -90698894 + FLAM_C SINE Alu 1 133 0 548 136 17 17 chr13 29046007 29046125 -90698773 + GA-rich Low_complexity Low_complexity 5 122 0 2273 129 3 0 chr13 29046304 29046613 -90698285 - AluSx SINE Alu -1 311 2 321 338 72 7 chr13 29047161 29047300 -90697598 - MIR3 SINE MIR -45 163 16 22 35 0 0 chr13 29049535 29049564 -90695334 + AT_rich Low_complexity Low_complexity 1 29 0 1730 155 53 0 chr13 29049764 29049929 -90694969 - AluJb SINE Alu -9 303 115 459 0 0 0 chr13 29049929 29049980 -90694918 + (TTA)n Simple_repeat Simple_repeat 1 51 0 1730 155 53 0 chr13 29049980 29050098 -90694800 - AluJb SINE Alu -197 115 5 239 106 43 0 chr13 29050157 29050204 -90694694 + (CATA)n Simple_repeat Simple_repeat 4 52 0 743 166 0 50 chr13 29050498 29050637 -90694261 + FLAM_A SINE Alu 1 132 -1 2169 107 31 0 chr13 29051013 29051303 -90693595 - AluSx SINE Alu -7 305 7 198 0 0 0 chr13 29051310 29051332 -90693566 + (A)n Simple_repeat Simple_repeat 1 22 0 2033 146 10 0 chr13 29051621 29051922 -90692976 + AluSx SINE Alu 1 304 -8 843 146 0 16 chr13 29051955 29052078 -90692820 + FRAM SINE Alu 36 156 -20 691 231 35 81 chr13 29052234 29052316 -90692582 + L1ME1 LINE L1 4811 4895 -1251 2385 91 0 3 chr13 29052316 29052613 -90692285 - AluSq SINE Alu -17 296 1 691 231 35 81 chr13 29052613 29052685 -90692213 + L1ME1 LINE L1 4895 4969 -1177 1610 178 80 0 chr13 29052685 29052971 -90691927 + AluJb SINE Alu 1 309 -3 691 231 35 81 chr13 29052971 29053075 -90691823 + L1ME1 LINE L1 4969 5058 -1088 2267 100 3 0 chr13 29053170 29053470 -90691428 + AluY SINE Alu 1 301 -10 776 144 7 85 chr13 29053492 29053645 -90691253 + FLAM_C SINE Alu 2 142 -1 2413 210 91 49 chr13 29053645 29053992 -90690906 + L1ME1 LINE L1 5201 5532 -634 2326 97 0 13 chr13 29053992 29054302 -90690596 + AluSx SINE Alu 1 306 -6 2413 210 91 49 chr13 29054302 29054791 -90690107 + L1ME1 LINE L1 5532 6091 -75 1765 136 11 18 chr13 29054796 29055075 -90689823 + AluJo SINE Alu 1 277 -35 651 184 32 16 chr13 29055115 29055240 -90689658 + FLAM_A SINE Alu 1 127 -6 266 184 92 13 chr13 29055293 29055369 -90689529 + L1MB7 LINE L1 6103 6184 0 402 338 91 29 chr13 29055369 29055600 -90689298 + L2 LINE L2 2305 2520 -794 2511 120 2 85 chr13 29055600 29055651 -90689247 - L1MB3 LINE L1 -2 6181 6127 2431 72 3 0 chr13 29055651 29055944 -90688954 - AluSp SINE Alu -19 294 1 2511 120 2 85 chr13 29055944 29056375 -90688523 - L1MB3 LINE L1 -56 6127 5739 402 338 91 29 chr13 29056375 29056551 -90688347 + L2 LINE L2 2520 2737 -577 995 281 131 30 chr13 29056621 29056750 -90688148 - L3 LINE CR1 -163 1414 1299 2531 77 0 0 chr13 29056750 29057061 -90687837 - AluY SINE Alu 0 311 1 995 281 131 30 chr13 29057061 29057398 -90687500 - L3 LINE CR1 -278 1299 901 1482 75 0 21 chr13 29058542 29058729 -90686169 - AluSg/x SINE Alu -44 268 86 5427 105 0 4 chr13 29058729 29059484 -90685414 - L1PA15 LINE L1 -1 6164 5413 877 144 0 0 chr13 29059486 29059611 -90685287 + AluSg/x SINE Alu 166 290 -22 2080 132 0 0 chr13 29059952 29060273 -90684625 - AluSx SINE Alu 0 321 1 2176 118 0 35 chr13 29060275 29060589 -90684309 - AluSx SINE Alu -9 303 1 1597 213 2 82 chr13 29061250 29061667 -90683231 + MSTD LTR MaLR 13 396 0 875 197 0 0 chr13 29061707 29061859 -90683039 - AluJo/FRAM SINE Alu -14 288 137 1340 123 5 0 chr13 29061862 29062049 -90682849 - AluSg/x SINE Alu -7 305 118 998 101 0 0 chr13 29062049 29062187 -90682711 - AluSg/x SINE Alu -12 300 163 982 187 17 74 chr13 29062213 29062443 -90682455 - AluJo SINE Alu -92 220 4 207 0 0 0 chr13 29062672 29062695 -90682203 + (TTTAG)n Simple_repeat Simple_repeat 1 23 0 331 167 83 0 chr13 29062695 29062755 -90682143 - AluSg/x SINE Alu -21 279 215 29 28 0 0 chr13 29062854 29062890 -90682008 + AT_rich Low_complexity Low_complexity 1 36 0 500 185 11 0 chr13 29063549 29063641 -90681257 - L2 LINE L2 0 3313 3221 644 221 0 89 chr13 29063953 29064192 -90680706 - AluJb SINE Alu 0 331 110 1553 68 5 34 chr13 29064322 29064528 -90680370 + AluY SINE Alu 100 299 -12 197 266 0 16 chr13 29064543 29064607 -90680291 + MIR SINE MIR 186 248 -14 33 43 0 0 chr13 29064607 29064654 -90680244 + AT_rich Low_complexity Low_complexity 1 47 0 213 39 0 0 chr13 29064811 29064837 -90680061 + (T)n Simple_repeat Simple_repeat 1 26 0 888 150 13 39 chr13 29064955 29065108 -90679790 + FAM SINE Alu 18 166 -19 210 37 0 0 chr13 29065109 29065136 -90679762 + (CATA)n Simple_repeat Simple_repeat 4 30 0 2071 102 6 87 chr13 29066128 29066326 -90678572 - AluSx SINE Alu -6 306 94 273 57 0 0 chr13 29066326 29066361 -90678537 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2159 99 0 3 chr13 29066361 29066644 -90678254 - AluY SINE Alu -29 282 1 2071 102 6 87 chr13 29066644 29066777 -90678121 - AluSx SINE Alu -216 96 1 285 250 167 8 chr13 29066801 29066921 -90677977 - L1MC5 LINE L1 -58 7903 7765 915 126 0 15 chr13 29067058 29067193 -90677705 - AluSq/x SINE Alu -180 133 1 247 306 207 0 chr13 29068528 29068639 -90676259 + L2 LINE L2 3139 3272 0 1570 185 0 11 chr13 29068901 29069177 -90675721 + AluJo SINE Alu 24 296 -16 1925 164 3 0 chr13 29069397 29069707 -90675191 + AluSx SINE Alu 2 312 0 1658 167 10 20 chr13 29070104 29070403 -90674495 - AluJb SINE Alu -15 297 2 2043 150 3 0 chr13 29070410 29070704 -90674194 - AluSx SINE Alu -17 295 1 215 321 64 0 chr13 29070943 29071052 -90673846 - MIR SINE MIR -60 202 87 224 313 53 13 chr13 29071058 29071208 -90673690 + L2 LINE L2 2181 2336 -978 193 228 105 0 chr13 29071344 29071401 -90673497 + L2 LINE L2 3249 3311 -2 231 339 0 0 chr13 29071932 29071994 -90672904 + L2 LINE L2 3205 3266 -6 2299 138 109 0 chr13 29072391 29072775 -90672123 + MSTB LTR MaLR 1 426 0 891 152 0 0 chr13 29073198 29073330 -90671568 + FLAM_C SINE Alu 1 132 -1 1483 138 0 14 chr13 29074047 29074264 -90670634 + AluSq SINE Alu 1 214 -99 866 165 0 0 chr13 29074456 29074589 -90670309 - FLAM_A SINE Alu 0 133 1 964 164 12 12 chr13 29074728 29074899 -90669999 - FAM SINE Alu 0 175 5 1453 243 121 27 chr13 29074954 29075561 -90669337 + MLT1E2 LTR MaLR 1 624 -2 1867 165 3 0 chr13 29076737 29077022 -90667876 + AluJo SINE Alu 1 286 -26 1022 176 16 5 chr13 29077220 29077407 -90667491 - MER5A DNA MER1_type 0 189 1 2158 89 57 0 chr13 29077508 29077790 -90667108 - AluSx SINE Alu -14 298 1 1723 176 13 20 chr13 29078150 29078451 -90666447 + AluJo SINE Alu 1 299 -13 665 292 26 13 chr13 29078557 29078783 -90666115 + MIR SINE MIR 21 249 -13 1376 138 61 122 chr13 29078813 29079125 -90665773 - AluJb SINE Alu -19 293 1 2284 122 0 0 chr13 29079212 29079515 -90665383 + AluSx SINE Alu 1 303 -9 2491 53 0 23 chr13 29079515 29079816 -90665082 + AluY SINE Alu 1 294 -17 2001 193 78 76 chr13 29079883 29080141 -90664757 - HsTC2 DNA Tc2 -5 1893 1637 2233 112 0 0 chr13 29080141 29080437 -90664461 + AluSx SINE Alu 1 296 -16 2218 110 0 0 chr13 29080439 29080756 -90664142 + AluSx SINE Alu 1 317 0 2001 193 78 76 chr13 29080756 29081120 -90663778 - HsTC2 DNA Tc2 -261 1637 1265 227 236 97 14 chr13 29081125 29081197 -90663701 - HsTC2 DNA Tc2 -1778 120 43 3819 181 23 6 chr13 29081315 29082048 -90662850 - L1MB8 LINE L1 -6 6172 5427 1798 171 31 14 chr13 29082211 29082503 -90662395 - AluJo SINE Alu -13 299 3 1667 159 65 0 chr13 29082838 29083115 -90661783 - AluJb SINE Alu -17 295 1 1045 179 10 25 chr13 29083843 29084039 -90660859 - AluJ SINE Alu -13 299 107 809 143 80 116 chr13 29084039 29084063 -90660835 - THE1C LTR MaLR -1 374 351 3004 51 5 8 chr13 29084063 29084452 -90660446 + L1PA7 LINE L1 5767 6154 0 809 143 80 116 chr13 29084452 29084651 -90660247 - THE1C LTR MaLR -24 351 159 1120 122 0 0 chr13 29084652 29084829 -90660069 + AluSq SINE Alu 151 327 0 332 330 67 6 chr13 29085104 29085283 -90659615 + MIR SINE MIR 2 191 -71 859 154 70 6 chr13 29085827 29085983 -90658915 - THE1C LTR MaLR -207 168 3 705 173 0 0 chr13 29085987 29086097 -90658801 - AluJ SINE Alu -201 111 2 2073 147 0 0 chr13 29086159 29086458 -90658440 - AluSx SINE Alu -13 299 1 205 219 110 0 chr13 29086492 29086574 -90658324 - MIR SINE MIR -69 193 103 209 240 146 10 chr13 29086686 29086782 -90658116 + MIR SINE MIR 138 246 -16 189 385 120 8 chr13 29087847 29087964 -90656934 - MIR SINE MIR -113 149 20 2669 42 0 3 chr13 29088848 29089159 -90655739 + AluY SINE Alu 1 310 -1 277 175 0 35 chr13 29090220 29090277 -90654621 + Tigger4(Zombi) DNA MER2_type 4 58 -2673 1337 142 0 0 chr13 29090302 29090506 -90654392 + Tigger4(Zombi) DNA MER2_type 2528 2731 0 480 262 213 19 chr13 29090520 29090783 -90654115 + L1MC/D LINE L1 5506 5819 -1989 1942 162 7 0 chr13 29090866 29091163 -90653735 + AluJo SINE Alu 1 299 -13 21 0 0 0 chr13 29091334 29091355 -90653543 + AT_rich Low_complexity Low_complexity 1 21 0 432 0 0 0 chr13 29091611 29091659 -90653239 + (TG)n Simple_repeat Simple_repeat 2 49 0 609 258 150 45 chr13 29091670 29091724 -90653174 - L1ME4a LINE L1 0 6121 6074 2141 92 18 0 chr13 29091724 29091997 -90652901 + AluSx SINE Alu 6 325 0 250 0 48 24 chr13 29091997 29092039 -90652859 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 609 258 150 45 chr13 29092039 29092158 -90652740 - L1ME4a LINE L1 -47 6074 5969 2373 78 7 0 chr13 29092158 29092454 -90652444 + AluSg SINE Alu 1 298 -12 609 258 150 45 chr13 29092454 29092605 -90652293 - L1ME4a LINE L1 -152 5969 5835 2032 130 41 0 chr13 29092605 29092898 -90652000 - AluSx SINE Alu -7 305 1 609 258 150 45 chr13 29092898 29093016 -90651882 - L1ME4a LINE L1 -286 5835 5629 396 235 117 34 chr13 29093034 29093213 -90651685 - MIR SINE MIR -59 203 10 385 200 60 67 chr13 29093450 29093465 -90651433 + MER112 DNA MER1_type 1 15 -245 2128 139 0 0 chr13 29093465 29093766 -90651132 - AluSx SINE Alu -11 301 1 385 200 60 67 chr13 29093766 29093900 -90650998 + MER112 DNA MER1_type 15 149 -111 2329 79 24 0 chr13 29093968 29094259 -90650639 - AluSp SINE Alu -15 298 1 1646 141 8 0 chr13 29094737 29094978 -90649920 - AluSx SINE Alu -69 243 1 2117 121 3 10 chr13 29095710 29096017 -90648881 + AluSq SINE Alu 2 306 -7 694 222 166 74 chr13 29096361 29096497 -90648401 - HAL1 LINE L1 -226 2281 2159 2023 94 0 0 chr13 29096497 29096751 -90648147 - AluSx SINE Alu -58 254 1 694 222 166 74 chr13 29096751 29097114 -90647784 - HAL1 LINE L1 -348 2159 1736 857 216 144 41 chr13 29097128 29097420 -90647478 - HAL1 LINE L1 -803 1704 1383 899 230 221 63 chr13 29097437 29097754 -90647144 - L1ME3A LINE L1 -8 6162 5754 405 0 0 0 chr13 29097754 29097799 -90647099 + (TA)n Simple_repeat Simple_repeat 1 45 0 899 230 221 63 chr13 29097799 29097924 -90646974 - L1ME3A LINE L1 -416 5754 5650 22 0 0 0 chr13 29098020 29098042 -90646856 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 29098359 29098388 -90646510 + AT_rich Low_complexity Low_complexity 1 29 0 1117 34 34 31 chr13 29098553 29098909 -90645989 + (TTTC)n Simple_repeat Simple_repeat 1 357 0 2262 88 0 0 chr13 29098993 29099298 -90645600 - AluSx SINE Alu 0 305 1 2517 60 3 3 chr13 29100684 29100985 -90643913 - AluSp SINE Alu -12 301 1 813 148 0 16 chr13 29101319 29101441 -90643457 + FLAM_A SINE Alu 6 125 -17 2446 93 0 3 chr13 29103219 29103529 -90641369 - AluSx SINE Alu -3 309 1 480 243 66 29 chr13 29103643 29103779 -90641119 - MLT1E3 LTR MaLR -430 194 54 3157 195 33 3 chr13 29104353 29104928 -90639970 + MER21B LTR ERV1 24 615 -248 546 223 142 9 chr13 29105081 29105292 -90639606 - HAL1 LINE L1 -1468 1039 801 518 158 12 0 chr13 29105298 29105380 -90639518 + FLAM_A SINE Alu 42 124 -18 221 128 43 0 chr13 29105467 29105514 -90639384 + (TTA)n Simple_repeat Simple_repeat 2 50 0 397 321 153 51 chr13 29105592 29105688 -90639210 - HAL1 LINE L1 -1932 575 490 925 173 74 40 chr13 29105688 29105789 -90639109 - MER3 DNA MER1_type 0 209 113 1931 150 0 29 chr13 29105789 29106103 -90638795 - AluJb SINE Alu -7 305 1 925 173 74 40 chr13 29106103 29106203 -90638695 - MER3 DNA MER1_type -96 113 1 397 321 153 51 chr13 29106203 29106219 -90638679 - HAL1 LINE L1 -2017 490 477 2172 105 3 3 chr13 29106219 29106515 -90638383 - AluSc SINE Alu -13 296 1 397 321 153 51 chr13 29106515 29106587 -90638311 - HAL1 LINE L1 -2030 477 414 1699 197 0 3 chr13 29106587 29106886 -90638012 - AluJo SINE Alu -14 298 1 397 321 153 51 chr13 29106886 29107129 -90637769 - HAL1 LINE L1 -2093 414 102 189 316 0 0 chr13 29107325 29107382 -90637516 - L2 LINE L2 -1 3312 3256 240 246 9 105 chr13 29107560 29107674 -90637224 + MLT1H LTR MaLR 434 536 -13 1825 119 0 19 chr13 29107770 29108030 -90636868 + AluSx SINE Alu 35 289 -23 3075 86 3 0 chr13 29108190 29108564 -90636334 + THE1C LTR MaLR 1 375 0 1501 189 54 0 chr13 29109118 29109398 -90635500 + AluJb SINE Alu 2 296 -16 1537 159 32 42 chr13 29109512 29109795 -90635103 - AluJb SINE Alu -31 281 2 2218 100 0 32 chr13 29109809 29110118 -90634780 - AluSx SINE Alu -13 299 1 199 338 13 13 chr13 29110353 29110430 -90634468 - L2 LINE L2 -1 3271 3195 194 300 56 33 chr13 29111582 29111672 -90633226 + L2 LINE L2 2630 2721 -593 1825 125 56 14 chr13 29111808 29112095 -90632803 - AluJo SINE Alu -13 299 1 955 218 70 35 chr13 29112219 29112535 -90632363 - L1MC4 LINE L1 0 8042 7716 207 114 0 0 chr13 29112794 29112829 -90632069 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 491 291 55 58 chr13 29113094 29113438 -90631460 + LTR16C LTR ERVL 149 491 0 462 235 25 86 chr13 29113461 29113623 -90631275 + MIR SINE MIR 29 180 -82 2612 33 0 3 chr13 29115135 29115434 -90629464 - AluY SINE Alu -5 306 9 2191 124 3 0 chr13 29116224 29116522 -90628376 + AluSq SINE Alu 1 299 -14 4041 118 31 2 chr13 29116534 29117144 -90627754 + L1MA5A LINE L1 5667 6294 -3 264 278 83 38 chr13 29117514 29117647 -90627251 + L2 LINE L2 3159 3297 -16 188 360 140 32 chr13 29117665 29117915 -90626983 - L3 LINE CR1 -7 1570 1294 873 164 24 18 chr13 29118858 29119023 -90625875 + MER5A DNA MER1_type 22 187 -2 220 253 232 0 chr13 29119032 29119131 -90625767 + L2 LINE L2 3151 3272 0 187 133 0 0 chr13 29120235 29120265 -90624633 + L2 LINE L2 3284 3313 0 596 326 62 27 chr13 29120270 29120641 -90624257 - L2 LINE L2 -1217 2097 1714 215 291 27 27 chr13 29121235 29121345 -90623553 - L2 LINE L2 -1232 2082 1973 238 291 184 50 chr13 29121387 29121882 -90623016 - L2 LINE L2 -1097 2217 1657 1964 92 92 0 chr13 29122141 29122414 -90622484 + AluSx SINE Alu 1 298 -14 24 0 0 0 chr13 29122472 29122496 -90622402 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 29122518 29122539 -90622359 + AT_rich Low_complexity Low_complexity 1 21 0 1805 160 0 17 chr13 29123428 29123722 -90621176 + AluJo SINE Alu 1 289 -23 22 0 0 0 chr13 29124083 29124105 -90620793 + AT_rich Low_complexity Low_complexity 1 22 0 1494 143 0 115 chr13 29124252 29124598 -90620300 + AluSx SINE Alu 1 309 0 365 279 39 10 chr13 29125151 29125255 -90619643 - MIR SINE MIR -109 153 47 487 204 265 20 chr13 29125668 29125815 -90619083 - MER5A DNA MER1_type -3 186 4 1661 170 47 7 chr13 29126407 29126707 -90618191 - MER58B DNA MER1_type 0 341 30 2234 95 3 26 chr13 29127445 29127751 -90617147 - AluSg SINE Alu -11 299 1 1308 214 126 53 chr13 29128238 29128326 -90616572 + MLT1C LTR MaLR 1 81 -386 1671 185 3 13 chr13 29128326 29128628 -90616270 + AluJo SINE Alu 1 299 -13 1308 214 126 53 chr13 29128628 29128974 -90615924 + MLT1C LTR MaLR 81 467 0 1893 123 41 0 chr13 29128996 29129265 -90615633 + AluSx SINE Alu 1 280 -32 741 254 51 42 chr13 29129576 29129793 -90615105 - MIR SINE MIR -30 232 14 786 155 0 23 chr13 29130283 29130412 -90614486 + FLAM_C SINE Alu 13 138 -5 2397 83 0 3 chr13 29131394 29131695 -90613203 - AluSg SINE Alu -10 300 1 25 31 0 0 chr13 29131919 29131951 -90612947 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr13 29131977 29132000 -90612898 + AT_rich Low_complexity Low_complexity 1 23 0 2025 143 0 10 chr13 29133747 29134055 -90610843 - AluJb SINE Alu -7 305 1 278 269 39 0 chr13 29134474 29134552 -90610346 + L2 LINE L2 3188 3268 -4 190 333 65 43 chr13 29135526 29135619 -90609279 + L2 LINE L2 3215 3309 -4 828 131 95 0 chr13 29135876 29136013 -90608885 + FRAM SINE Alu 6 155 -21 225 326 103 63 chr13 29136331 29136506 -90608392 + MIR3 SINE MIR 21 202 -6 354 210 20 20 chr13 29136896 29136996 -90607902 + L2 LINE L2 2446 2545 -769 721 210 57 19 chr13 29137002 29137159 -90607739 + MLT1A2 LTR MaLR 1 163 -211 1786 170 10 7 chr13 29137162 29137462 -90607436 + AluJo SINE Alu 1 301 -11 654 195 67 7 chr13 29137462 29137611 -90607287 + MLT1A2 LTR MaLR 230 387 -3 674 272 117 5 chr13 29137713 29137919 -90606979 + MIR SINE MIR 34 262 0 363 307 40 125 chr13 29138210 29138562 -90606336 + L2 LINE L2 2950 3271 -1 541 345 96 47 chr13 29138569 29139244 -90605654 + L2 LINE L2 2538 3259 -13 332 286 0 48 chr13 29139428 29139533 -90605365 - MER112 DNA MER1_type -160 100 1 343 280 113 54 chr13 29139676 29139844 -90605054 + MIR SINE MIR 77 254 -8 235 232 18 0 chr13 29140660 29140716 -90604182 - L2 LINE L2 0 3313 3257 262 288 0 0 chr13 29140789 29140848 -90604050 + L2 LINE L2 3209 3267 -5 708 174 137 31 chr13 29141050 29141211 -90603687 - AluJo SINE Alu -20 292 115 360 285 0 39 chr13 29141531 29141661 -90603237 + L2 LINE L2 2218 2342 -972 387 172 17 0 chr13 29141866 29141924 -90602974 + MER2 DNA MER2_type 2 60 -285 1551 138 65 11 chr13 29142011 29142271 -90602627 + MER2 DNA MER2_type 72 345 0 198 170 21 0 chr13 29142325 29142372 -90602526 - L2 LINE L2 -164 3149 3102 * 222 300 20 0 chr13 29142370 29142420 -90602478 + MER91A DNA MER1_type 119 169 -27 1925 262 72 52 chr13 29142450 29142660 -90602238 - L2 LINE L2 -491 2823 2619 1161 163 62 14 chr13 29142660 29142869 -90602029 + MER20 DNA MER1_type 1 219 0 1925 262 72 52 chr13 29142869 29142945 -90601953 - L2 LINE L2 -695 2619 2546 2353 76 0 3 chr13 29142945 29143248 -90601650 - AluY SINE Alu -9 302 1 1925 262 72 52 chr13 29143248 29144037 -90600861 - L2 LINE L2 -768 2546 1728 225 177 32 32 chr13 29144183 29144245 -90600653 - L1MC4 LINE L1 -191 7851 7790 282 222 0 0 chr13 29144337 29144400 -90600498 - L1MC4 LINE L1 -370 7672 7610 1647 134 105 43 chr13 29145554 29145905 -90598993 + THE1C LTR MaLR 3 375 0 27 29 0 0 chr13 29146093 29146127 -90598771 + AT_rich Low_complexity Low_complexity 1 34 0 953 184 112 18 chr13 29146222 29146445 -90598453 + MLT1F LTR MaLR 1 244 -298 619 183 37 92 chr13 29146449 29146613 -90598285 + MLT1F LTR MaLR 413 567 0 2366 62 10 7 chr13 29147270 29147576 -90597322 + AluY SINE Alu 1 307 -4 224 281 110 12 chr13 29147626 29147708 -90597190 + MER5B DNA MER1_type 50 139 -39 370 122 0 81 chr13 29147715 29147789 -90597109 + Tigger2 DNA MER2_type 2 69 -2649 * 2043 155 67 23 chr13 29147773 29147890 -90597008 + Tigger2 DNA MER2_type 2267 2377 -341 2540 97 24 13 chr13 29147890 29148273 -90596625 - L1PB2 LINE L1 -4 6147 5761 2043 155 67 23 chr13 29148273 29148588 -90596310 + Tigger2 DNA MER2_type 2377 2718 0 423 223 293 19 chr13 29148740 29148897 -90596001 - MIR SINE MIR -6 256 57 204 328 45 0 chr13 29148903 29148970 -90595928 - MIR SINE MIR -114 148 79 1585 108 117 4 chr13 29149490 29149730 -90595168 - AluSg SINE Alu -21 289 23 425 161 0 12 chr13 29150068 29150149 -90594749 + MER21B LTR ERV1 420 499 -364 322 302 0 47 chr13 29150334 29150420 -90594478 - L2 LINE L2 -46 3226 3145 425 179 0 21 chr13 29150448 29150543 -90594355 + (CATATA)n Simple_repeat Simple_repeat 3 95 0 258 330 50 30 chr13 29151268 29151368 -90593530 + MIR SINE MIR 20 121 -87 774 199 12 6 chr13 29151370 29151531 -90593367 - AluSx SINE Alu -11 301 140 595 133 0 0 chr13 29151530 29151613 -90593285 - AluSx SINE Alu -229 83 1 * 344 230 84 42 chr13 29152108 29152409 -90592489 + L1MC4a LINE L1 5650 5822 -299 533 264 58 34 chr13 29152657 29152831 -90592067 - MIR3 SINE MIR -12 196 18 210 250 141 0 chr13 29152829 29152895 -90592003 - MIR SINE MIR -103 105 39 * 1999 105 0 51 chr13 29152986 29153301 -90591597 - AluSg SINE Alu -11 299 1 870 220 121 23 chr13 29153598 29153903 -90590995 - MER46C DNA MER2_type 0 338 4 300 276 105 59 chr13 29157239 29157478 -90587420 - L2 LINE L2 -739 2575 2326 185 218 91 0 chr13 29157920 29157975 -90586923 - MIR SINE MIR -31 231 172 655 187 187 11 chr13 29158137 29158319 -90586579 + MER20 DNA MER1_type 1 214 -5 211 339 122 26 chr13 29158555 29158744 -90586154 - L3 LINE CR1 -79 1498 1292 210 281 123 44 chr13 29161026 29161140 -90583758 - MIR SINE MIR -114 148 26 229 263 112 53 chr13 29161155 29161307 -90583591 + MER5A DNA MER1_type 28 188 -1 998 249 143 27 chr13 29161407 29162019 -90582879 - L2 LINE L2 -8 3305 2629 1783 229 145 64 chr13 29162034 29162767 -90582131 + MER21B LTR ERV1 18 809 -54 2113 120 29 109 chr13 29162780 29162842 -90582056 + MER65A LTR ERV1 1 66 -379 1504 181 0 35 chr13 29162842 29163156 -90581742 + AluJo SINE Alu 1 303 -9 2113 120 29 109 chr13 29163156 29163577 -90581321 + MER65A LTR ERV1 66 445 0 910 186 133 8 chr13 29163609 29163857 -90581041 - L2 LINE L2 -677 2637 2359 369 89 0 0 chr13 29163955 29164011 -90580887 - AluSc SINE Alu -1 298 243 214 333 20 0 chr13 29164133 29164232 -90580666 + CT-rich Low_complexity Low_complexity 2 102 0 2075 104 14 0 chr13 29164453 29164740 -90580158 - AluSx SINE Alu -21 291 1 25 0 0 0 chr13 29164844 29164869 -90580029 + AT_rich Low_complexity Low_complexity 1 25 0 1153 186 16 80 chr13 29164936 29165030 -90579868 + MER58B DNA MER1_type 51 149 -2271 2001 109 14 14 chr13 29165030 29165358 -90579540 + AluSx SINE Alu 1 312 0 1153 186 16 80 chr13 29165358 29165574 -90579324 + MER58B DNA MER1_type 149 341 0 24 0 0 0 chr13 29165867 29165891 -90579007 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 29166665 29166694 -90578204 + AT_rich Low_complexity Low_complexity 1 29 0 1543 125 35 17 chr13 29166699 29166868 -90578030 - L1MB2 LINE L1 -32 6139 5961 2058 95 15 58 chr13 29166868 29167193 -90577705 - AluSx SINE Alu -1 311 1 1543 125 35 17 chr13 29167193 29167310 -90577588 - L1MB2 LINE L1 -210 5961 5848 2271 72 3 7 chr13 29168218 29168510 -90576388 + AluY SINE Alu 1 291 -20 197 233 0 0 chr13 29168652 29168695 -90576203 + L2 LINE L2 2464 2506 -808 528 329 6 6 chr13 29168695 29168865 -90576033 + L2 LINE L2 2483 2652 -662 878 165 0 0 chr13 29168893 29169026 -90575872 - FLAM_C SINE Alu -10 133 1 209 294 29 0 chr13 29169028 29169096 -90575802 + L2 LINE L2 2689 2758 -556 1983 161 16 0 chr13 29169110 29169414 -90575484 + AluJb SINE Alu 1 309 -3 2110 86 53 30 chr13 29169414 29169714 -90575184 + AluSc SINE Alu 1 308 -1 668 230 22 0 chr13 29169744 29169883 -90575015 + FRAM SINE Alu 27 168 -8 260 183 0 17 chr13 29169898 29169958 -90574940 + GA-rich Low_complexity Low_complexity 2 60 0 29 0 0 0 chr13 29169960 29169989 -90574909 + AT_rich Low_complexity Low_complexity 1 29 0 723 276 171 27 chr13 29169992 29170461 -90574437 + L2 LINE L2 2772 3307 -6 23 0 0 0 chr13 29170554 29170577 -90574321 + AT_rich Low_complexity Low_complexity 1 23 0 1886 174 0 7 chr13 29170725 29171023 -90573875 + AluJb SINE Alu 1 296 -16 945 156 22 34 chr13 29171023 29171202 -90573696 + AluJb SINE Alu 134 310 -2 1711 124 84 4 chr13 29171269 29171543 -90573355 + AluSx SINE Alu 5 300 -12 534 266 97 52 chr13 29171631 29171898 -90573000 + L2 LINE L2 1645 1923 -1391 1882 42 0 0 chr13 29172062 29172303 -90572595 - L1PA7 LINE L1 -200 5954 5714 2365 115 0 0 chr13 29172303 29172608 -90572290 - AluSg SINE Alu -5 305 1 1578 129 80 10 chr13 29172987 29173298 -90571600 + MER44D DNA MER2_type 1 603 -6 417 113 0 38 chr13 29173299 29173379 -90571519 - Tigger7 DNA MER2_type -63 2424 2348 2072 116 0 44 chr13 29173385 29173705 -90571193 + AluSx SINE Alu 1 306 -6 3474 167 42 3 chr13 29173717 29174357 -90570541 - Tigger7 DNA MER2_type -1821 666 2 561 299 98 22 chr13 29174408 29175443 -90569455 - L1ME3A LINE L1 -307 5863 4743 357 266 44 44 chr13 29176480 29176638 -90568260 + L1ME LINE L1 5618 5775 -346 677 165 0 0 chr13 29176659 29176768 -90568130 + FLAM_A SINE Alu 11 119 -23 1104 149 63 54 chr13 29176840 29177061 -90567837 - AluJb SINE Alu -7 305 83 436 293 83 13 chr13 29178057 29178214 -90566684 + MER5B DNA MER1_type 7 174 -4 491 233 25 0 chr13 29178217 29178337 -90566561 + MLT1L LTR MaLR 149 271 -344 31 26 0 0 chr13 29178661 29178699 -90566199 + AT_rich Low_complexity Low_complexity 1 38 0 42 65 0 0 chr13 29178754 29178831 -90566067 + AT_rich Low_complexity Low_complexity 1 77 0 2347 88 0 0 chr13 29178831 29179116 -90565782 + AluSc SINE Alu 1 285 -24 294 206 0 0 chr13 29179118 29179181 -90565717 + (TA)n Simple_repeat Simple_repeat 1 63 0 25 0 0 0 chr13 29179275 29179300 -90565598 + AT_rich Low_complexity Low_complexity 1 25 0 300 171 333 19 chr13 29179468 29179573 -90565325 - L1ME1 LINE L1 0 6166 6029 2305 90 3 3 chr13 29180306 29180606 -90564292 + AluSq SINE Alu 1 300 -13 300 273 106 30 chr13 29181009 29181141 -90563757 + MER5B DNA MER1_type 7 148 -30 1427 157 0 26 chr13 29181805 29182035 -90562863 - AluJo SINE Alu -12 300 77 363 158 12 18 chr13 29182092 29182176 -90562722 - AluJ/FLAM SINE Alu -235 67 6 620 116 290 0 chr13 29183179 29183317 -90561581 + Tigger4(Zombi) DNA MER2_type 2554 2731 0 2140 118 0 3 chr13 29183512 29183808 -90561090 - AluSx SINE Alu -17 295 1 2259 94 7 7 chr13 29183901 29184200 -90560698 + AluSq SINE Alu 1 299 -14 446 304 47 23 chr13 29184835 29185049 -90559849 - MIR SINE MIR -41 221 3 414 216 0 39 chr13 29185658 29185760 -90559138 + MIR SINE MIR 87 184 -78 762 192 150 16 chr13 29186477 29186670 -90558228 + MER20 DNA MER1_type 1 219 0 3475 129 93 47 chr13 29188559 29189304 -90555594 + LTR1 LTR ERV1 7 785 0 2106 117 0 29 chr13 29189959 29190275 -90554623 - AluSx SINE Alu -5 307 1 21 0 0 0 chr13 29190573 29190594 -90554304 + AT_rich Low_complexity Low_complexity 1 21 0 1432 170 30 48 chr13 29190596 29190867 -90554031 - AluJo SINE Alu -22 290 25 4477 201 25 8 chr13 29191057 29192104 -90552794 - L1 LINE L1 -1250 4896 3832 385 111 48 0 chr13 29194394 29194457 -90550441 - MIR3 SINE MIR -53 155 90 1751 122 45 17 chr13 29196436 29196771 -90548127 - MER4A LTR ERV1 0 664 262 467 101 0 14 chr13 29196786 29196855 -90548043 - MER4A LTR ERV1 -595 69 2 2254 94 7 0 chr13 29197638 29197926 -90546972 - AluSp SINE Alu -23 290 1 270 157 39 0 chr13 29198605 29198656 -90546242 + MIR SINE MIR 200 252 -10 22 0 0 0 chr13 29199020 29199042 -90545856 + AT_rich Low_complexity Low_complexity 1 22 0 381 206 28 0 chr13 29199060 29199167 -90545731 + (TA)n Simple_repeat Simple_repeat 1 110 0 686 87 11 22 chr13 29199168 29199260 -90545638 - FLAM_A SINE Alu -19 123 33 2129 151 10 74 chr13 29199330 29199369 -90545529 - MLT1B LTR MaLR 0 390 350 2371 104 3 0 chr13 29199369 29199678 -90545220 + AluSp SINE Alu 1 310 -3 2129 151 10 74 chr13 29199678 29200055 -90544843 - MLT1B LTR MaLR -40 350 1 180 268 24 0 chr13 29200666 29200707 -90544191 - L2 LINE L2 -16 3256 3215 232 129 0 0 chr13 29200761 29200792 -90544106 + MER46A DNA MER2_type 2 32 -204 800 108 0 0 chr13 29200794 29200896 -90544002 - AluSp/q SINE Alu -18 295 194 703 130 9 9 chr13 29200896 29201004 -90543894 + MER46A DNA MER2_type 129 236 0 203 259 176 0 chr13 29201004 29201089 -90543809 - MIR SINE MIR -111 151 52 1434 155 89 113 chr13 29201089 29201548 -90543350 + LTR7 LTR ERV1 1 448 -2 2895 3 0 3 chr13 29201646 29201958 -90542940 + AluYa5 SINE Alu 1 311 0 180 200 0 93 chr13 29201967 29202042 -90542856 + MIR SINE MIR 137 204 -58 440 285 20 20 chr13 29202053 29202204 -90542694 + MLT1H LTR MaLR 155 305 -244 432 228 165 29 chr13 29202432 29202638 -90542260 + MLT1H LTR MaLR 315 548 -7 255 284 65 41 chr13 29202952 29203121 -90541777 + HAL1 LINE L1 473 645 -1862 2113 163 96 0 chr13 29203386 29203772 -90541126 - MSTB LTR MaLR 0 426 4 230 205 0 48 chr13 29203891 29203974 -90540924 + HAL1 LINE L1 999 1077 -1430 476 348 39 19 chr13 29204464 29204720 -90540178 - MIR SINE MIR 0 262 2 2224 118 0 13 chr13 29204816 29205129 -90539769 + AluSg SINE Alu 2 310 0 2031 104 14 0 chr13 29205509 29205789 -90539109 - AluSx SINE Alu 0 312 29 512 214 0 10 chr13 29205822 29205925 -90538973 + L2 LINE L2 2289 2390 -924 25 51 0 0 chr13 29206031 29206070 -90538828 + AT_rich Low_complexity Low_complexity 1 39 0 1007 192 36 0 chr13 29206352 29206519 -90538379 - FAM SINE Alu -2 173 1 414 368 48 0 chr13 29207355 29207557 -90537341 - L2 LINE L2 -217 3055 2842 2231 107 0 0 chr13 29207668 29207958 -90536940 + AluSx SINE Alu 1 290 -22 2409 84 3 0 chr13 29208041 29208338 -90536560 - AluSp SINE Alu -15 298 1 413 333 28 7 chr13 29208338 29208479 -90536419 - MIR SINE MIR -111 151 8 2013 149 0 3 chr13 29208620 29208916 -90535982 + AluSx SINE Alu 1 295 -17 770 205 38 17 chr13 29209159 29209370 -90535528 + MER3 DNA MER1_type 2 170 -39 1019 111 0 21 chr13 29209392 29209536 -90535362 - AluJb SINE Alu -171 141 1 327 143 0 0 chr13 29209538 29209587 -90535311 + MER3 DNA MER1_type 155 203 -6 1854 189 58 6 chr13 29209672 29210015 -90534883 + MLT1A1 LTR MaLR 5 365 0 2353 105 7 3 chr13 29210061 29210365 -90534533 - AluSx SINE Alu -7 305 1 1661 133 39 0 chr13 29210541 29210796 -90534102 - AluJb SINE Alu -8 304 40 28 48 0 0 chr13 29211116 29211158 -90533740 + AT_rich Low_complexity Low_complexity 1 42 0 206 188 0 42 chr13 29211892 29211940 -90532958 + L3 LINE CR1 177 222 -1355 442 194 0 25 chr13 29211988 29212098 -90532800 - L1PA16 LINE L1 -122 6009 5904 551 218 210 44 chr13 29212773 29213044 -90531854 + L1MC4 LINE L1 7478 7793 -249 21 0 0 0 chr13 29213224 29213245 -90531653 + AT_rich Low_complexity Low_complexity 1 21 0 4180 155 33 19 chr13 29213250 29213979 -90530919 - L1PA16 LINE L1 -9 6157 5419 349 286 57 0 chr13 29213980 29214085 -90530813 + L1MC4 LINE L1 7932 8042 0 2722 190 58 17 chr13 29214540 29215057 -90529841 - MLT1F LTR MaLR 0 542 5 384 192 30 40 chr13 29215638 29215657 -90529241 - MER104 DNA Tc2 -1776 122 104 1942 156 7 7 chr13 29215657 29215964 -90528934 + AluSx SINE Alu 1 307 -5 384 192 30 40 chr13 29215964 29216043 -90528855 - MER104 DNA Tc2 -1794 104 25 2220 111 19 7 chr13 29216077 29216384 -90528514 + AluSx SINE Alu 1 311 -1 1980 132 24 7 chr13 29217043 29217339 -90527559 + AluSx SINE Alu 1 301 -11 514 207 180 0 chr13 29217397 29217547 -90527351 + MER104 DNA MER2_type 1 177 -3 311 324 171 0 chr13 29219517 29219622 -90525276 + MER5B DNA MER1_type 4 126 -52 323 167 0 14 chr13 29219677 29219749 -90525149 + CT-rich Low_complexity Low_complexity 1 71 0 801 149 0 0 chr13 29219749 29219863 -90525035 - FLAM_A SINE Alu -17 125 12 277 130 19 37 chr13 29219886 29219940 -90524958 + MER5B DNA MER1_type 126 178 0 1453 147 34 8 chr13 29220285 29220551 -90524347 - AluSp SINE Alu -19 294 22 3835 131 100 12 chr13 29221478 29222148 -90522750 - L1MB4 LINE L1 0 6180 5452 21 0 0 0 chr13 29224653 29224674 -90520224 + AT_rich Low_complexity Low_complexity 1 21 0 1740 176 243 109 chr13 29224962 29225734 -90519164 - MER52C LTR ERV1 0 1278 211 258 302 101 0 chr13 29226162 29226291 -90518607 - MIR SINE MIR 0 262 121 259 176 39 0 chr13 29226837 29226888 -90518010 - L1ME LINE L1 -477 5644 5592 271 328 47 8 chr13 29227103 29227231 -90517667 - L2 LINE L2 -9 3304 3172 2703 209 59 13 chr13 29227257 29227638 -90517260 + MER82 DNA MER2_type 1 422 -231 2505 65 0 0 chr13 29227638 29227948 -90516950 + AluY SINE Alu 1 310 -1 2703 209 59 13 chr13 29227948 29228177 -90516721 + MER82 DNA MER2_type 422 639 -14 1836 146 4 4 chr13 29228315 29228589 -90516309 - AluSx SINE Alu -36 276 3 402 200 0 0 chr13 29228591 29228661 -90516237 + MLT1A1 LTR MaLR 296 365 0 200 306 200 0 chr13 29228664 29228749 -90516149 + L2 LINE L2 2910 3011 -302 2433 281 177 29 chr13 29228753 29230318 -90514580 - L2 LINE L2 -1278 2036 240 2178 143 0 0 chr13 29230388 29230696 -90514202 + AluSx SINE Alu 1 308 -4 340 152 105 0 chr13 29230729 29230795 -90514103 - AluJ/FLAM SINE Alu -240 62 1 24 32 0 0 chr13 29231370 29231401 -90513497 + AT_rich Low_complexity Low_complexity 1 31 0 874 177 0 0 chr13 29231437 29231578 -90513320 - AluJo SINE Alu -171 141 1 1767 171 161 18 chr13 29232212 29232646 -90512252 + LTR54B LTR ERV1 1 496 -2 2092 121 3 3 chr13 29233294 29233592 -90511306 - AluSx SINE Alu -14 298 1 221 327 152 15 chr13 29235414 29235677 -90509221 - L2 LINE L2 -23 3249 2951 2264 81 0 16 chr13 29235822 29236131 -90508767 + AluY SINE Alu 1 304 -7 2265 126 3 0 chr13 29236459 29236761 -90508137 - AluSg SINE Alu -7 303 1 289 315 82 7 chr13 29237467 29237613 -90507285 - L1ME LINE L1 -398 5772 5616 699 0 0 0 chr13 29237789 29237863 -90507035 - tRNA-Asn-AAC tRNA tRNA -3 74 1 21 57 0 0 chr13 29238049 29238084 -90506814 + GC_rich Low_complexity Low_complexity 1 35 0 369 213 104 91 chr13 29238387 29238608 -90506290 - MER106A DNA MER1_type -11 225 2 2345 55 26 16 chr13 29238712 29239019 -90505879 - AluSg SINE Alu 0 310 1 3389 148 142 5 chr13 29239023 29239680 -90505218 - L1MB3 LINE L1 -52 6131 5385 1247 72 55 6 chr13 29240212 29240393 -90504505 + AluY SINE Alu 1 190 -121 584 137 60 8 chr13 29240493 29240610 -90504288 + AluY SINE Alu 187 309 -2 433 278 24 16 chr13 29241345 29241471 -90503427 + L2 LINE L2 3185 3311 -2 3666 119 88 54 chr13 29241588 29242316 -90502582 + L1MA9 LINE L1 5474 6234 -66 306 0 0 0 chr13 29242316 29242350 -90502548 + (TG)n Simple_repeat Simple_repeat 2 35 0 3666 119 88 54 chr13 29242350 29242415 -90502483 + L1MA9 LINE L1 6234 6295 -5 645 255 75 19 chr13 29242586 29242798 -90502100 + L1ME LINE L1 5566 5789 -332 1757 138 0 44 chr13 29242802 29242934 -90501964 + AluJo SINE Alu 11 147 -165 2008 128 34 0 chr13 29242934 29243231 -90501667 + AluSx SINE Alu 5 311 -1 1757 138 0 44 chr13 29243231 29243395 -90501503 + AluJo SINE Alu 147 294 -18 878 142 0 8 chr13 29443583 29443717 -90301181 - AluJo/FLAM SINE Alu -169 133 1 994 147 32 0 chr13 29445563 29445719 -90299179 - MER20 DNA MER1_type -2 217 57 258 244 13 64 chr13 29445835 29445913 -90298985 - MIR SINE MIR -71 191 118 24 32 0 0 chr13 29446258 29446289 -90298609 + AT_rich Low_complexity Low_complexity 1 31 0 1932 107 9 63 chr13 29446336 29446655 -90298243 - AluSx SINE Alu -10 302 1 710 212 73 20 chr13 29446825 29446976 -90297922 - MER5B DNA MER1_type -3 175 17 360 339 144 10 chr13 29447635 29447830 -90297068 + MIR SINE MIR 29 249 -13 258 271 218 24 chr13 29448427 29448597 -90296301 - L1MC4 LINE L1 -203 7839 7637 303 278 62 21 chr13 29450434 29450531 -90294367 + L2 LINE L2 3209 3309 -4 2748 95 0 8 chr13 29451138 29451505 -90293393 - THE1B LTR MaLR 0 364 1 225 65 0 0 chr13 29452248 29452279 -90292619 + (CA)n Simple_repeat Simple_repeat 1 31 0 283 316 91 74 chr13 29452300 29452597 -90292301 + L2 LINE L2 2971 3272 0 1606 191 118 27 chr13 29452664 29453103 -90291795 - MLT1D LTR MaLR -1 496 9 220 33 0 0 chr13 29454518 29454548 -90290350 + MIR SINE MIR 107 136 -126 255 290 97 39 chr13 29454575 29454730 -90290168 + MIR SINE MIR 60 223 -39 509 246 87 0 chr13 29454889 29455027 -90289871 - MER103 DNA DNA -15 151 2 217 274 126 0 chr13 29455648 29455743 -90289155 - MIR SINE MIR -60 148 42 634 167 7 7 chr13 29455794 29455932 -90288966 + GA-rich Low_complexity Low_complexity 4 141 0 226 291 76 48 chr13 29456140 29456391 -90288507 + MLT1K LTR MaLR 183 440 -148 887 278 80 49 chr13 29456476 29456926 -90287972 - MER115 DNA AcHobo -116 577 114 337 220 84 21 chr13 29457146 29457278 -90287620 + MIR SINE MIR 82 226 -36 568 244 158 24 chr13 29457417 29457626 -90287272 + MIR SINE MIR 8 244 -18 1735 153 0 4 chr13 29458617 29458885 -90286013 + AluSg SINE Alu 1 267 -43 1511 139 60 4 chr13 29459007 29459273 -90285625 - L1MB3 LINE L1 -95 6088 5808 275 271 206 42 chr13 29459273 29459487 -90285411 + L2 LINE L2 2977 3225 -47 498 221 44 22 chr13 29460102 29460238 -90284660 + MIR SINE MIR 49 187 -75 21 0 0 0 chr13 29460733 29460754 -90284144 + AT_rich Low_complexity Low_complexity 1 21 0 276 241 0 0 chr13 29461156 29461210 -90283688 - Tigger3(Golem) DNA MER2_type -30 2999 2946 274 212 15 15 chr13 29462187 29462253 -90282645 - MIR3 SINE MIR -3 205 140 267 309 0 0 chr13 29462204 29462259 -90282639 - L3 LINE CR1 -15 1562 1508 * 193 222 0 25 chr13 29462653 29462734 -90282164 + CT-rich Low_complexity Low_complexity 4 82 0 1532 208 23 26 chr13 29464595 29464942 -90279956 + MLT1A2 LTR MaLR 25 370 -4 227 31 31 0 chr13 29466416 29466448 -90278450 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 57 0 0 chr13 29466634 29466669 -90278229 + AT_rich Low_complexity Low_complexity 1 35 0 873 295 67 14 chr13 29466832 29467262 -90277636 - L1ME4a LINE L1 -190 5931 5479 200 305 43 14 chr13 29468716 29468857 -90276041 + MIR3 SINE MIR 57 201 -7 294 278 14 0 chr13 29469860 29469932 -90274966 - MIR SINE MIR -109 153 81 259 305 93 25 chr13 29470299 29470417 -90274481 + L2 LINE L2 3142 3267 -5 745 254 49 15 chr13 29470715 29470920 -90273978 + MLT1A2 LTR MaLR 163 374 0 300 266 37 46 chr13 29470989 29471098 -90273800 - L2 LINE L2 -2 3311 3204 414 252 53 30 chr13 29471158 29471289 -90273609 - MIR SINE MIR -112 150 17 237 299 103 17 chr13 29471600 29471717 -90273181 + MIR SINE MIR 61 187 -75 476 270 38 25 chr13 29471826 29471985 -90272913 + MIR SINE MIR 102 262 0 192 265 48 72 chr13 29472567 29472650 -90272248 + L2 LINE L2 1369 1449 -1865 2006 115 18 0 chr13 29472665 29472951 -90271947 - AluSx SINE Alu -21 291 1 341 242 15 0 chr13 29473739 29473805 -90271093 + L2 LINE L2 3206 3272 0 216 97 0 0 chr13 29473854 29473885 -90271013 + (A)n Simple_repeat Simple_repeat 1 31 0 2074 122 0 0 chr13 29474988 29475284 -90269614 + AluSq SINE Alu 1 296 -17 1463 184 19 8 chr13 29475711 29475977 -90268921 + MLT1A2 LTR MaLR 1 269 -105 248 282 129 45 chr13 29476146 29476348 -90268550 + L2 LINE L2 3094 3312 -1 417 338 42 7 chr13 29476434 29476576 -90268322 + L2 LINE L2 3162 3308 -5 * 501 254 27 0 chr13 29476574 29476684 -90268214 - L2 LINE L2 -12 3301 3189 1889 148 0 16 chr13 29476756 29477060 -90267838 - AluJb SINE Alu -11 301 3 1766 135 8 0 chr13 29478689 29478956 -90265942 - AluSq SINE Alu -44 269 1 2053 123 3 0 chr13 29479915 29480216 -90264682 + AluSx SINE Alu 1 302 -10 412 105 13 66 chr13 29480408 29480484 -90264414 - MER41A-int LTR ERV1 -5874 72 1 3973 103 13 14 chr13 29480484 29480604 -90264294 - MER41A LTR ERV1 0 554 435 1996 68 23 0 chr13 29480604 29480867 -90264031 + AluY SINE Alu 33 301 -10 3973 103 13 14 chr13 29480867 29481301 -90263597 - MER41A LTR ERV1 -119 435 1 1038 113 0 13 chr13 29481306 29481457 -90263441 + LOR1a LTR ERV1 349 497 0 3254 177 77 22 chr13 29481860 29482549 -90262349 + LTR8A LTR ERV1 1 727 0 23 33 0 0 chr13 29483149 29483179 -90261719 + AT_rich Low_complexity Low_complexity 1 30 0 2176 68 31 3 chr13 29483490 29483782 -90261116 + AluY SINE Alu 1 300 -11 235 313 0 0 chr13 29484005 29484069 -90260829 - L2 LINE L2 -253 3060 2997 2964 162 59 67 chr13 29484192 29484889 -90260009 + LTR8 LTR ERV1 1 691 0 604 194 19 0 chr13 29485255 29485363 -90259535 + MER2 DNA MER2_type 10 119 -226 351 254 0 0 chr13 29485432 29485499 -90259399 + MER2 DNA MER2_type 279 345 0 493 270 26 0 chr13 29486588 29486703 -90258195 + MIR SINE MIR 84 201 -61 2519 39 3 0 chr13 29487419 29487727 -90257171 + AluY SINE Alu 1 309 -2 248 202 35 28 chr13 29487903 29487975 -90256923 - MIR SINE MIR -60 148 58 315 273 87 40 chr13 29489062 29489212 -90255686 + MIR3 SINE MIR 6 162 -46 1917 13 105 4 chr13 29490581 29490820 -90254078 - AluYa5 SINE Alu 0 311 49 643 240 111 24 chr13 29490897 29491105 -90253793 + MIR SINE MIR 11 236 -26 2005 119 14 0 chr13 29491134 29491427 -90253471 + AluSx SINE Alu 1 297 -15 180 0 0 0 chr13 29491433 29491453 -90253445 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 368 298 136 35 chr13 29491635 29491701 -90253197 - MIR SINE MIR -14 248 190 2450 196 13 9 chr13 29491701 29492165 -90252733 + MLT1C LTR MaLR 1 466 -1 368 298 136 35 chr13 29492165 29492296 -90252602 - MIR SINE MIR -72 190 31 229 328 40 40 chr13 29493519 29493644 -90251254 - MIR SINE MIR -130 132 8 521 244 174 40 chr13 29493728 29494027 -90250871 + MLT1J2 LTR MaLR 112 450 0 635 238 290 3 chr13 29494854 29495140 -90249758 + L2 LINE L2 2123 2490 -824 4411 160 46 4 chr13 29495152 29495975 -90248923 - L1MB7 LINE L1 -69 6115 5258 1173 140 0 0 chr13 29495970 29496156 -90248742 + L1 LINE L1 5110 5295 -851 * 207 0 0 0 chr13 29496158 29496181 -90248717 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3431 231 85 18 chr13 29496188 29497281 -90247617 - L1MB7 LINE L1 -2036 4110 2945 906 259 50 4 chr13 29497427 29497666 -90247232 - MER46C DNA MER2_type -88 250 1 1035 275 59 53 chr13 29497666 29498383 -90246515 + L2 LINE L2 2534 3313 0 1683 158 37 72 chr13 29498430 29498834 -90246064 - MLT1B LTR MaLR 0 390 1 330 314 42 17 chr13 29500313 29500431 -90244467 - MIR SINE MIR -25 237 117 308 259 152 13 chr13 29500703 29500814 -90244084 + MIR SINE MIR 45 163 -45 730 187 8 0 chr13 29501029 29501294 -90243604 - AluSg/x SINE Alu 0 443 178 2168 112 0 10 chr13 29501507 29501821 -90243077 - AluSx SINE Alu -1 311 1 267 326 202 5 chr13 29502620 29502813 -90242085 - MIR SINE MIR -10 252 22 1704 163 3 14 chr13 29503311 29503600 -90241298 + AluJo SINE Alu 1 286 -26 21 0 0 0 chr13 29503600 29503621 -90241277 + AT_rich Low_complexity Low_complexity 1 21 0 2381 70 0 0 chr13 29503806 29504105 -90240793 + AluY SINE Alu 1 299 -12 2336 180 21 2 chr13 29504230 29504652 -90240246 - MSTB1 LTR MaLR -2 430 1 2005 110 205 6 chr13 29506205 29506561 -90238337 - MSTA LTR MaLR 0 428 2 2922 265 111 21 chr13 29506705 29508143 -90236755 - L2 LINE L2 -3 3310 1762 238 205 0 0 chr13 29508166 29508205 -90236693 + MIR SINE MIR 210 248 -14 288 279 200 21 chr13 29508394 29508534 -90236364 - MIR3 SINE MIR -21 187 23 186 103 0 0 chr13 29509423 29509452 -90235446 + (CTG)n Simple_repeat Simple_repeat 2 30 0 502 310 53 11 chr13 29509685 29509871 -90235027 + MIR SINE MIR 11 204 -58 338 260 13 13 chr13 29509871 29509948 -90234950 - MER5B DNA MER1_type -1 177 101 656 256 79 0 chr13 29509954 29510118 -90234780 + MER5B DNA MER1_type 2 178 0 346 262 0 0 chr13 29510406 29510490 -90234408 - MER5A DNA MER1_type -84 105 22 217 267 67 29 chr13 29510489 29510594 -90234304 + MIR SINE MIR 16 124 -138 * 291 199 16 31 chr13 29510887 29510977 -90233921 + MLT1K LTR MaLR 498 558 -30 552 273 0 27 chr13 29511014 29511164 -90233734 + MIR SINE MIR 97 242 -20 857 107 0 8 chr13 29512737 29512858 -90232040 + FLAM_C SINE Alu 1 120 -23 498 191 111 0 chr13 29512866 29512992 -90231906 + L1MB7 LINE L1 6033 6172 -12 352 315 50 87 chr13 29513061 29513359 -90231539 - HAL1 LINE L1 -1205 1302 1016 1324 216 83 18 chr13 29514005 29514283 -90230615 - AluJo SINE Alu -2 300 5 336 208 58 83 chr13 29515155 29515275 -90229623 + MLT1L LTR MaLR 207 323 -292 203 147 0 0 chr13 29515275 29515309 -90229589 + (TG)n Simple_repeat Simple_repeat 1 34 0 428 303 46 23 chr13 29515358 29515533 -90229365 + MLT1L LTR MaLR 350 528 -87 899 171 42 105 chr13 29515579 29515666 -90229232 - MIR SINE MIR 0 262 171 1806 154 0 13 chr13 29515666 29515964 -90228934 - AluSx SINE Alu -18 294 1 899 171 42 105 chr13 29515964 29516115 -90228783 - MIR SINE MIR -91 171 39 2271 105 0 6 chr13 29516516 29516830 -90228068 - AluSx SINE Alu 0 312 1 413 227 160 0 chr13 29518139 29518258 -90226640 - FLAM_C SINE Alu 0 143 6 279 0 0 0 chr13 29518665 29518696 -90226202 + (TG)n Simple_repeat Simple_repeat 2 32 0 924 286 42 18 chr13 29518900 29519236 -90225662 + L3 LINE CR1 540 883 -694 330 294 101 17 chr13 29519324 29519443 -90225455 + L3 LINE CR1 1136 1264 -313 422 174 60 0 chr13 29520096 29520263 -90224635 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 190 321 60 12 chr13 29520618 29520702 -90224196 - L2 LINE L2 -469 2845 2758 1169 268 65 45 chr13 29520807 29521339 -90223559 + L2 LINE L2 2774 3308 -5 680 239 147 38 chr13 29521568 29521882 -90223016 + MER7A DNA MER2_type 1 346 0 234 283 0 22 chr13 29523423 29523515 -90221383 + (TG)n Simple_repeat Simple_repeat 1 90 0 197 206 0 14 chr13 29523528 29523601 -90221297 + (TG)n Simple_repeat Simple_repeat 1 72 0 392 283 0 23 chr13 29523645 29523822 -90221076 + (TG)n Simple_repeat Simple_repeat 2 174 0 459 264 0 16 chr13 29523864 29524046 -90220852 + (TG)n Simple_repeat Simple_repeat 1 179 0 331 326 0 11 chr13 29524058 29524233 -90220665 + (TG)n Simple_repeat Simple_repeat 1 173 0 437 294 0 27 chr13 29524352 29524727 -90220171 + (TG)n Simple_repeat Simple_repeat 1 364 0 411 252 6 23 chr13 29524912 29525407 -90219491 + (TG)n Simple_repeat Simple_repeat 1 486 0 1421 159 57 70 chr13 29527879 29528194 -90216704 + AluJo SINE Alu 1 311 -1 813 256 242 3 chr13 29528324 29528687 -90216211 + MLT1J2 LTR MaLR 1 450 0 811 230 9 71 chr13 29529673 29529899 -90214999 - MIR SINE MIR -25 237 26 182 309 0 0 chr13 29530768 29530810 -90214088 + L2 LINE L2 3211 3252 -20 192 167 167 0 chr13 29531430 29531484 -90213414 - MIR3 SINE MIR -41 167 105 186 103 0 0 chr13 29532582 29532611 -90212287 + (CAG)n Simple_repeat Simple_repeat 3 31 0 613 239 7 0 chr13 29533842 29533980 -90210918 - MER105 DNA DNA -20 184 46 1815 137 0 20 chr13 29535673 29535965 -90208933 - AluJo SINE Alu -16 296 11 522 259 49 27 chr13 29536185 29536370 -90208528 + MIR SINE MIR 2 190 -72 399 17 50 0 chr13 29536716 29536776 -90208122 + (TG)n Simple_repeat Simple_repeat 1 63 0 288 137 0 0 chr13 29537897 29537948 -90206950 + (TA)n Simple_repeat Simple_repeat 1 51 0 328 307 111 33 chr13 29538217 29538540 -90206358 - L1M4 LINE L1 -1076 5070 4774 1573 174 0 27 chr13 29538540 29538834 -90206064 - AluJo SINE Alu -22 290 5 328 307 111 33 chr13 29538834 29539061 -90205837 - L1M4 LINE L1 -1372 4774 4477 3449 264 60 54 chr13 29539433 29540463 -90204435 + L2 LINE L2 623 1663 -1651 1639 174 6 25 chr13 29540463 29540780 -90204118 + AluJo SINE Alu 1 311 -1 3449 264 60 54 chr13 29540780 29541093 -90203805 + L2 LINE L2 1663 1973 -1341 252 356 63 23 chr13 29541256 29541430 -90203468 + L2 LINE L2 3103 3283 -30 1892 145 47 33 chr13 29542105 29542464 -90202434 + THE1B LTR MaLR 1 364 0 822 241 58 75 chr13 29542633 29542928 -90201970 - L2 LINE L2 0 3313 3024 203 200 108 46 chr13 29543512 29543577 -90201321 + L3 LINE CR1 1380 1448 -129 271 310 69 37 chr13 29545100 29545316 -90199582 - L2 LINE L2 -791 2523 2301 390 253 48 89 chr13 29545791 29546060 -90198838 + L2 LINE L2 2914 3171 -142 242 33 0 0 chr13 29546136 29546166 -90198732 - HSMAR1 DNA Mariner -1257 30 1 311 265 30 90 chr13 29546201 29546401 -90198497 + L2 LINE L2 3123 3310 -3 199 339 17 35 chr13 29546453 29546568 -90198330 - L2 LINE L2 -168 3104 2992 1160 280 223 24 chr13 29546745 29547666 -90197232 - L2 LINE L2 -978 2336 1233 370 242 194 16 chr13 29548238 29548362 -90196536 - MIR SINE MIR 0 262 117 455 177 10 0 chr13 29549920 29550016 -90194882 + GA-rich Low_complexity Low_complexity 3 99 0 545 216 85 51 chr13 29550267 29550443 -90194455 + MLT1B LTR MaLR 7 188 -186 815 254 30 0 chr13 29550472 29550669 -90194229 + MLT1B LTR MaLR 188 390 0 353 240 140 33 chr13 29550878 29551028 -90193870 - MIR SINE MIR 0 262 97 386 298 161 53 chr13 29551076 29551492 -90193406 - L2 LINE L2 -1 3271 2811 237 336 21 21 chr13 29551630 29551770 -90193128 - MIR SINE MIR -73 189 50 387 0 0 0 chr13 29552112 29552155 -90192743 + (CAGGG)n Simple_repeat Simple_repeat 1 43 0 220 301 27 14 chr13 29552442 29552515 -90192383 - L2 LINE L2 -6 3307 3234 198 339 62 0 chr13 29552722 29552787 -90192111 + L2 LINE L2 3187 3255 -17 * 207 107 0 0 chr13 29552761 29552789 -90192109 + MIR SINE MIR 226 253 -9 458 289 21 7 chr13 29553687 29553829 -90191069 + MIR SINE MIR 119 262 0 39 95 0 0 chr13 29554326 29554442 -90190456 + AT_rich Low_complexity Low_complexity 1 116 0 28 0 0 0 chr13 29554719 29554747 -90190151 + AT_rich Low_complexity Low_complexity 1 28 0 430 288 131 49 chr13 29554896 29555202 -90189696 - MARNA DNA Mariner -131 455 125 1895 135 3 25 chr13 29555361 29555679 -90189219 - AluSx SINE Alu -1 311 1 340 314 152 0 chr13 29556040 29556145 -90188753 + L2 LINE L2 3151 3271 -1 545 284 16 31 chr13 29557138 29557300 -90187598 - MIR SINE MIR -62 146 30 1872 148 10 6 chr13 29557571 29557882 -90187016 - AluSx SINE Alu 0 312 1 225 344 44 0 chr13 29558916 29559006 -90185892 + L3 LINE CR1 1214 1307 -270 1967 247 112 17 chr13 29559011 29559482 -90185416 + MLT1E LTR MaLR 8 537 -56 1687 125 8 4 chr13 29559482 29559730 -90185168 + AluSq SINE Alu 48 296 -17 1967 247 112 17 chr13 29559730 29559793 -90185105 + MLT1E LTR MaLR 537 593 0 622 317 53 15 chr13 29559793 29560058 -90184840 + L3 LINE CR1 1302 1576 -1 236 362 101 29 chr13 29560850 29560988 -90183910 - L2 LINE L2 -4 3268 3121 1587 273 50 0 chr13 29561341 29561737 -90183161 + MLT1J LTR MaLR 96 511 0 488 341 49 31 chr13 29561737 29561960 -90182938 + MIR SINE MIR 26 252 -10 410 285 38 38 chr13 29562108 29562294 -90182604 + L2 LINE L2 2904 3089 -183 941 73 0 7 chr13 29562399 29562535 -90182363 + (GGAA)n Simple_repeat Simple_repeat 2 136 0 2201 136 25 17 chr13 29562706 29563067 -90181831 + MLT1A1 LTR MaLR 2 365 0 24 0 0 0 chr13 29563345 29563369 -90181529 + AT_rich Low_complexity Low_complexity 1 24 0 2248 98 3 0 chr13 29563528 29563833 -90181065 - AluSp SINE Alu -7 306 1 1976 84 29 0 chr13 29565836 29566147 -90178751 + AluY SINE Alu 1 319 0 880 228 53 15 chr13 29568339 29568545 -90176353 - MIR SINE MIR -2 260 47 441 264 62 0 chr13 29569272 29569401 -90175497 - MIR3 SINE MIR -12 196 60 373 252 111 75 chr13 29569839 29570065 -90174833 + MLT1H LTR MaLR 109 342 -207 245 227 17 62 chr13 29570090 29570229 -90174669 + MLT1I LTR MaLR 348 409 0 465 237 90 34 chr13 29570397 29570574 -90174324 + MER112 DNA MER1_type 66 252 -8 231 324 14 27 chr13 29570625 29570699 -90174199 + L2 LINE L2 3200 3272 0 266 313 14 61 chr13 29570930 29571077 -90173821 + L2 LINE L2 3132 3271 -1 225 292 180 0 chr13 29571075 29571164 -90173734 + MIR3 SINE MIR 98 202 -6 * 1141 119 0 0 chr13 29572016 29572184 -90172714 - L1M3 LINE L1 -594 5740 5573 * 1364 150 65 56 chr13 29572174 29572321 -90172577 + L1MA10 LINE L1 6025 6169 -165 378 0 0 0 chr13 29572321 29572363 -90172535 + (CA)n Simple_repeat Simple_repeat 2 43 0 1364 150 65 56 chr13 29572363 29572521 -90172377 + L1MA10 LINE L1 6169 6333 -1 360 280 133 14 chr13 29573178 29573321 -90171577 + L2 LINE L2 2993 3152 -120 693 185 0 15 chr13 29574553 29574688 -90170210 + FLAM_A SINE Alu 1 133 0 2388 47 0 3 chr13 29575536 29575832 -90169066 + AluY SINE Alu 2 296 -15 2295 80 0 3 chr13 29575964 29576265 -90168633 - AluSc SINE Alu -9 300 1 427 284 43 35 chr13 29576648 29576789 -90168109 + MIR SINE MIR 120 261 -1 337 315 79 45 chr13 29577456 29577515 -90167383 + MIR3 SINE MIR 4 60 -148 1340 218 44 7 chr13 29577515 29577813 -90167085 - AluJb SINE Alu -3 309 1 337 315 79 45 chr13 29577813 29577931 -90166967 + MIR3 SINE MIR 60 187 -21 409 277 27 0 chr13 29579784 29579896 -90165002 + MIR3 SINE MIR 68 182 -26 214 262 0 0 chr13 29581133 29581175 -90163723 + polypyrimidine Low_complexity Low_complexity 2 43 0 513 265 80 33 chr13 29581496 29581688 -90163210 + MLT1H LTR MaLR 22 210 -339 326 226 57 48 chr13 29581811 29581935 -90162963 + MLT1H LTR MaLR 423 547 -2 233 211 74 74 chr13 29582408 29582503 -90162395 - L2 LINE L2 0 3313 3219 1220 276 72 21 chr13 29582522 29582950 -90161948 - L2 LINE L2 -835 2479 2030 824 266 84 60 chr13 29582952 29582976 -90161922 + MLT1L LTR MaLR 4 26 -589 2806 128 17 7 chr13 29582976 29583398 -90161500 - MSTB LTR MaLR 0 426 1 824 266 84 60 chr13 29583398 29583787 -90161111 + MLT1L LTR MaLR 26 427 -188 316 248 80 8 chr13 29583807 29583932 -90160966 + MLT1L LTR MaLR 481 614 -1 2349 80 0 6 chr13 29584897 29585210 -90159688 - AluSp SINE Alu 0 313 3 5525 30 3 0 chr13 29585228 29585868 -90159030 - L1PA4 LINE L1 0 6155 5514 1545 258 144 17 chr13 29586357 29587069 -90157829 + L2 LINE L2 2346 3128 -185 271 296 80 28 chr13 29587119 29587295 -90157603 + L2 LINE L2 3091 3275 -38 1089 40 213 35 chr13 29587602 29587776 -90157122 - AluY SINE Alu -106 205 1 344 211 196 31 chr13 29587802 29587996 -90156902 - L1ME4a LINE L1 -171 5950 5725 745 267 67 51 chr13 29588020 29588376 -90156522 + MER83C LTR ERV1 2 363 -10 289 267 81 93 chr13 29588477 29588528 -90156370 - L1ME4a LINE L1 -530 5591 5541 1913 220 48 22 chr13 29588528 29588983 -90155915 + MLT1C LTR MaLR 1 467 0 289 267 81 93 chr13 29588983 29589351 -90155547 - L1ME4a LINE L1 -580 5541 5055 1068 40 0 0 chr13 29589362 29589487 -90155411 - L1PA8 LINE L1 -491 5681 5557 3629 84 2 6 chr13 29589487 29589971 -90154927 + L1PA8 LINE L1 5686 6172 0 945 306 34 78 chr13 29589972 29590507 -90154391 - L1ME4a LINE L1 -1100 5046 4543 2324 49 0 3 chr13 29590507 29590819 -90154079 - AluY SINE Alu 0 311 1 945 306 34 78 chr13 29590819 29590953 -90153945 - L1ME4a LINE L1 -1603 4543 4405 294 235 83 53 chr13 29591192 29591324 -90153574 + MER102a DNA MER1_type 33 168 -162 427 260 76 48 chr13 29591334 29591668 -90153230 + L1ME1 LINE L1 57 733 -5689 543 243 57 0 chr13 29591889 29592029 -90152869 + L1ME1 LINE L1 816 963 -5460 2072 115 23 0 chr13 29592074 29592378 -90152520 + AluSx SINE Alu 1 311 -1 3283 237 38 30 chr13 29592380 29593448 -90151450 + L1ME1 LINE L1 3161 4237 -2704 256 214 0 0 chr13 29593491 29593533 -90151365 + AluJ/monomer SINE Alu 2 43 -257 873 197 10 43 chr13 29593556 29593764 -90151134 + L1ME1 LINE L1 4596 4796 -2145 724 223 5 5 chr13 29593796 29594067 -90150831 + L1ME1 LINE L1 5970 6239 -743 3000 142 129 5 chr13 29594090 29594655 -90150243 + LTR24C LTR ERV1 1 635 0 1827 214 86 72 chr13 29594658 29594873 -90150025 + L1ME1 LINE L1 6267 6478 -483 2006 135 6 6 chr13 29594873 29595184 -90149714 + AluSx SINE Alu 1 311 -1 1827 214 86 72 chr13 29595184 29595608 -90149290 + L1ME1 LINE L1 6478 6915 -46 1136 263 14 10 chr13 29595759 29596052 -90148846 - MER87 LTR ERV1 -50 491 198 257 185 37 139 chr13 29596201 29596309 -90148589 + MER102a DNA MER1_type 210 306 -24 2996 223 44 58 chr13 29596329 29596983 -90147915 + MER21B LTR ERV1 12 654 -209 2908 179 70 49 chr13 29596983 29597658 -90147240 - LTR8 LTR ERV1 0 691 3 2996 223 44 58 chr13 29597658 29597855 -90147043 + MER21B LTR ERV1 654 852 -11 216 211 0 0 chr13 29597961 29597999 -90146899 + L2 LINE L2 3035 3072 -200 23 0 0 0 chr13 29598653 29598676 -90146222 + AT_rich Low_complexity Low_complexity 1 23 0 25 99 0 0 chr13 29598765 29598846 -90146052 + AT_rich Low_complexity Low_complexity 1 81 0 366 292 41 59 chr13 29598900 29599119 -90145779 + LTR33 LTR ERVL 1 215 -306 553 259 120 0 chr13 29599391 29599549 -90145349 - MER5B DNA MER1_type -1 177 1 6396 137 174 7 chr13 29599840 29600935 -90143963 + MER52C LTR ERV1 1 1278 0 1046 9 0 0 chr13 29601287 29601403 -90143495 - AluYb8 SINE Alu -3 315 200 595 245 49 12 chr13 29601674 29601837 -90143061 - MLT1H LTR MaLR -379 170 2 1140 180 14 5 chr13 29602080 29602297 -90142601 + L1MC3 LINE L1 5982 6200 -1585 477 281 40 58 chr13 29602532 29602756 -90142142 + L2 LINE L2 2807 3026 -287 358 185 176 28 chr13 29602769 29602877 -90142021 + L2 LINE L2 3180 3303 -10 222 37 0 0 chr13 29603233 29603260 -90141638 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 198 71 0 0 chr13 29603348 29603376 -90141522 + (TG)n Simple_repeat Simple_repeat 1 28 0 503 296 62 48 chr13 29603801 29604173 -90140725 + L1 LINE L1 2254 2630 -3516 240 271 42 42 chr13 29604370 29604488 -90140410 + L1 LINE L1 2894 3011 -3135 331 328 145 15 chr13 29604938 29605159 -90139739 + MIR SINE MIR 2 250 -12 267 196 19 93 chr13 29605297 29605404 -90139494 + MIR3 SINE MIR 79 177 -31 225 0 0 0 chr13 29605413 29605438 -90139460 + (TA)n Simple_repeat Simple_repeat 1 25 0 1775 125 110 0 chr13 29605438 29605702 -90139196 - AluSx SINE Alu -19 293 1 207 146 0 0 chr13 29605887 29605928 -90138970 + (TG)n Simple_repeat Simple_repeat 2 42 0 2878 190 36 60 chr13 29606032 29606633 -90138265 - L1ME2 LINE L1 0 6164 5581 2105 141 0 6 chr13 29606633 29606945 -90137953 + AluSx SINE Alu 1 310 -2 2878 190 36 60 chr13 29606945 29607065 -90137833 - L1ME2 LINE L1 -583 5581 5460 216 343 102 73 chr13 29607293 29607567 -90137331 + L2 LINE L2 2925 3206 -66 204 135 0 0 chr13 29608111 29608148 -90136750 + (TC)n Simple_repeat Simple_repeat 2 38 0 462 18 0 0 chr13 29609356 29609411 -90135487 + (CA)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr13 29609795 29609818 -90135080 + AT_rich Low_complexity Low_complexity 1 23 0 2550 149 171 21 chr13 29611010 29611526 -90133372 + LTR49 LTR ERV1 1 593 -2 477 318 199 12 chr13 29611888 29612300 -90132598 + L3 LINE CR1 1078 1566 -11 2234 109 0 3 chr13 29612842 29613145 -90131753 + AluSq SINE Alu 12 313 0 399 113 113 14 chr13 29613647 29613718 -90131180 - MER53 DNA DNA 0 189 112 327 197 92 0 chr13 29613659 29613735 -90131163 + MER53 DNA DNA 23 105 -84 * 343 104 0 0 chr13 29613741 29613789 -90131109 - MER53 DNA DNA -137 52 5 2225 191 31 8 chr13 29614577 29614964 -90129934 + MSTD LTR MaLR 1 396 0 221 299 13 39 chr13 29615224 29615301 -90129597 - MER5A DNA MER1_type -2 187 113 * 244 281 55 62 chr13 29615247 29615393 -90129505 + MER5A DNA MER1_type 36 180 -9 185 288 178 0 chr13 29615853 29615926 -90128972 + L2 LINE L2 3187 3272 0 2346 88 0 19 chr13 29616442 29616759 -90128139 + AluY SINE Alu 1 311 0 285 316 123 48 chr13 29617123 29617433 -90127465 - L2 LINE L2 -337 2977 2645 420 305 121 8 chr13 29617567 29617922 -90126976 - L2 LINE L2 -1028 2286 1822 929 260 96 122 chr13 29618024 29618710 -90126188 + HAL1 LINE L1 150 852 -1655 231 238 0 0 chr13 29618710 29618752 -90126146 - MER69 DNA AcHobo -135 42 1 929 260 96 122 chr13 29618752 29619025 -90125873 + HAL1 LINE L1 852 1122 -1385 1842 152 26 19 chr13 29619025 29619334 -90125564 + AluSx SINE Alu 1 311 -1 929 260 96 122 chr13 29619334 29619422 -90125476 + HAL1 LINE L1 1122 1211 -1296 1506 213 106 24 chr13 29619426 29619843 -90125055 - HAL1 LINE L1 -806 1701 1251 717 253 104 65 chr13 29619886 29620393 -90124505 + HAL1 LINE L1 1980 2506 -1 556 234 82 43 chr13 29620498 29620682 -90124216 + MIR SINE MIR 35 225 -37 316 256 54 107 chr13 29620684 29620926 -90123972 - L2 LINE L2 -1545 1769 1541 396 259 17 26 chr13 29621725 29621841 -90123057 - L2 LINE L2 0 3272 3158 337 325 117 64 chr13 29621885 29622505 -90122393 + L2 LINE L2 2560 3222 -50 3853 15 0 0 chr13 29623140 29623552 -90121346 + L1PA4 LINE L1 5741 6152 -3 1316 267 70 11 chr13 29623582 29624054 -90120844 + L2 LINE L2 1337 1836 -1478 661 227 117 43 chr13 29624123 29624285 -90120613 - L1MC5 LINE L1 -487 7474 7285 1556 81 90 0 chr13 29624285 29624496 -90120402 - MER30 DNA MER1_type 0 230 1 661 227 117 43 chr13 29624496 29624589 -90120309 - L1MC5 LINE L1 -676 7285 7200 1586 197 3 14 chr13 29624812 29625096 -90119802 + AluJo SINE Alu 1 281 -31 367 202 46 29 chr13 29625099 29625249 -90119649 + (TA)n Simple_repeat Simple_repeat 2 157 -20 387 0 0 0 chr13 29625249 29625292 -90119606 + (TG)n Simple_repeat Simple_repeat 2 44 0 367 202 46 29 chr13 29625292 29625314 -90119584 + (TA)n Simple_repeat Simple_repeat 157 177 0 517 280 105 25 chr13 29625384 29625670 -90119228 + L2 LINE L2 2218 2526 -788 206 315 92 15 chr13 29625817 29625947 -90118951 - L2 LINE L2 -192 3080 2941 792 225 0 6 chr13 29625993 29626162 -90118736 + L1MB5 LINE L1 5677 5844 -330 1630 158 79 7 chr13 29626233 29626536 -90118362 + L1MB5 LINE L1 5850 6174 0 28 71 0 0 chr13 29627116 29627172 -90117726 + AT_rich Low_complexity Low_complexity 1 56 0 1609 239 65 62 chr13 29627182 29628035 -90116863 + L1MC5 LINE L1 7059 7913 -48 1686 147 3 28 chr13 29628198 29628484 -90116414 - AluJo SINE Alu -14 298 20 6187 219 112 77 chr13 29628538 29629223 -90115675 + Charlie2a DNA MER1_type 79 739 -2123 1666 127 0 0 chr13 29629223 29629444 -90115454 - AluSx SINE Alu -89 223 3 6187 219 112 77 chr13 29629444 29630371 -90114527 + Charlie2a DNA MER1_type 739 1632 -1230 7840 43 0 0 chr13 29630371 29631828 -90113070 + L1PA4 LINE L1 4699 6152 -3 6187 219 112 77 chr13 29631828 29632811 -90112087 + Charlie2a DNA MER1_type 1632 2765 -97 14313 195 34 20 chr13 29632811 29638073 -90106825 + L1PB3 LINE L1 800 6210 -1 467 256 130 14 chr13 29638372 29638579 -90106319 - MIR SINE MIR -29 233 3 1529 119 0 0 chr13 29638610 29638828 -90106070 - AluSg/x SINE Alu -8 302 85 2620 61 0 0 chr13 29638937 29639247 -90105651 + AluY SINE Alu 1 310 -1 233 253 53 0 chr13 29640104 29640179 -90104719 - HAL1b LINE L1 -13 1335 1257 850 251 98 4 chr13 29640607 29640882 -90104016 - L2 LINE L2 -1093 2221 1921 1233 185 177 48 chr13 29640885 29641264 -90103634 + MSTC LTR MaLR 1 428 0 310 298 25 0 chr13 29642141 29642262 -90102636 - MER117 DNA MER1_type -35 162 39 719 219 89 33 chr13 29643469 29643663 -90101235 + MLT1D LTR MaLR 27 209 -296 7242 115 61 66 chr13 29643663 29644946 -90099952 - MER52C LTR ERV1 -2 1276 1 719 219 89 33 chr13 29644946 29645139 -90099759 + MLT1D LTR MaLR 209 505 0 513 305 108 40 chr13 29645471 29645822 -90099076 - L2 LINE L2 -933 2381 2007 492 194 100 65 chr13 29647905 29648075 -90096823 + LTR45B LTR ERV1 313 488 -1 193 269 115 0 chr13 29648780 29648858 -90096040 + MIR SINE MIR 108 194 -68 205 278 96 9 chr13 29649163 29649278 -90095620 - L2 LINE L2 -229 3043 2919 1745 181 13 3 chr13 29649670 29649969 -90094929 + AluJo SINE Alu 1 302 -10 243 328 0 0 chr13 29649988 29650055 -90094843 + (CACG)n Simple_repeat Simple_repeat 4 70 0 287 206 29 0 chr13 29650374 29650442 -90094456 - MER5A DNA MER1_type -77 112 43 333 246 239 0 chr13 29650484 29650614 -90094284 + MER5A DNA MER1_type 29 189 0 1883 189 25 3 chr13 29650909 29651263 -90093635 - MLT2D LTR ERVL -52 362 1 189 0 0 0 chr13 29651587 29651608 -90093290 + (T)n Simple_repeat Simple_repeat 1 21 0 928 143 0 0 chr13 29651608 29651741 -90093157 - AluJb SINE Alu -179 133 1 710 242 150 39 chr13 29651876 29651943 -90092955 - MARNA DNA Mariner -55 531 473 2278 111 53 8 chr13 29651943 29652302 -90092596 - THE1C LTR MaLR 0 375 1 710 242 150 39 chr13 29652302 29652494 -90092404 - MARNA DNA Mariner -113 473 243 219 36 0 0 chr13 29652513 29652541 -90092357 + (A)n Simple_repeat Simple_repeat 1 28 0 2228 117 0 0 chr13 29652679 29652991 -90091907 + AluSq SINE Alu 2 313 0 339 236 63 47 chr13 29653118 29653245 -90091653 + L2 LINE L2 3184 3312 -1 328 244 6 6 chr13 29656078 29656238 -90088660 + GA-rich Low_complexity Low_complexity 2 161 0 203 229 0 0 chr13 29656240 29656275 -90088623 + polypurine Low_complexity Low_complexity 2 36 0 2184 120 0 16 chr13 29656349 29656666 -90088232 + AluSx SINE Alu 1 312 0 2332 90 7 0 chr13 29657016 29657315 -90087583 + AluSq SINE Alu 1 301 -12 26 30 0 0 chr13 29657453 29657486 -90087412 + AT_rich Low_complexity Low_complexity 1 33 0 1868 154 20 10 chr13 29658957 29659256 -90085642 - AluJo SINE Alu 0 312 11 517 270 59 7 chr13 29660139 29660291 -90084607 + MER91B DNA MER1_type 23 182 -8 227 191 0 0 chr13 29661141 29661183 -90083715 + MIR SINE MIR 119 160 -102 2465 107 123 5 chr13 29661664 29662047 -90082851 + MSTA LTR MaLR 1 428 0 451 288 58 47 chr13 29662656 29662847 -90082051 - L3 LINE CR1 -675 902 710 183 173 19 58 chr13 29664050 29664102 -90080796 - L2 LINE L2 0 3313 3264 2170 115 0 3 chr13 29665497 29665810 -90079088 - AluSx SINE Alu 0 312 1 1734 160 0 54 chr13 29666036 29666349 -90078549 + AluJo SINE Alu 1 296 -16 305 284 154 18 chr13 29666461 29666630 -90078268 + MIR SINE MIR 57 248 -14 234 0 0 0 chr13 29667036 29667062 -90077836 + (TG)n Simple_repeat Simple_repeat 2 27 0 297 286 143 0 chr13 29667475 29667594 -90077304 - L2 LINE L2 0 3272 3137 423 214 255 7 chr13 29667644 29667789 -90077109 + MER5A DNA MER1_type 9 189 0 223 285 89 0 chr13 29668271 29668394 -90076504 + MIR SINE MIR 81 214 -48 411 247 0 0 chr13 29668412 29668509 -90076389 - MIR SINE MIR -103 159 63 294 269 77 0 chr13 29669031 29669135 -90075763 + MIR SINE MIR 46 157 -105 300 27 0 0 chr13 29669350 29669387 -90075511 + (TG)n Simple_repeat Simple_repeat 2 38 0 1843 157 30 10 chr13 29670428 29670728 -90074170 - AluJb SINE Alu -6 306 1 419 111 0 14 chr13 29670820 29670892 -90074006 + (GGGA)n Simple_repeat Simple_repeat 4 74 0 25 31 0 0 chr13 29672846 29672878 -90072020 + GC_rich Low_complexity Low_complexity 1 32 0 655 348 79 19 chr13 29675081 29675714 -90069184 - L2 LINE L2 -466 2848 2178 181 311 0 0 chr13 29675704 29675749 -90069149 - MIR SINE MIR -172 90 46 * 234 241 157 0 chr13 29675760 29675843 -90069055 - L2 LINE L2 -9 3263 3168 2210 129 0 0 chr13 29676268 29676562 -90068336 + AluSq SINE Alu 1 294 -19 581 313 95 16 chr13 29677014 29677382 -90067516 - L1ME4a LINE L1 -195 5926 5530 410 301 93 31 chr13 29677735 29678024 -90066874 + L2 LINE L2 1649 1955 -1359 297 275 11 11 chr13 29678114 29678205 -90066693 + MIR SINE MIR 61 151 -111 332 260 285 10 chr13 29678215 29678415 -90066483 + MIR SINE MIR 2 256 -6 224 350 118 3 chr13 29678593 29678882 -90066016 + L2 LINE L2 2175 2496 -818 1015 212 35 35 chr13 29679091 29679350 -90065548 + MLT1B LTR MaLR 19 277 -113 1963 141 85 32 chr13 29679354 29679730 -90065168 + MSTD LTR MaLR 1 396 0 244 203 34 0 chr13 29680210 29680269 -90064629 + MIR SINE MIR 197 257 -5 1363 248 68 31 chr13 29681151 29681607 -90063291 + MER74B LTR ERVL 75 547 -75 451 259 79 42 chr13 29681932 29682121 -90062777 - MIR SINE MIR -3 259 64 371 250 25 0 chr13 29682215 29682295 -90062603 + MER58B DNA MER1_type 1 82 -259 267 114 0 23 chr13 29682298 29682342 -90062556 - L1 LINE L1 -1544 4602 4560 1175 210 36 20 chr13 29682342 29682594 -90062304 + MER58B DNA MER1_type 86 341 0 207 114 0 0 chr13 29682847 29682882 -90062016 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 893 250 9 0 chr13 29684113 29684329 -90060569 + MIR SINE MIR 12 229 -33 293 272 10 19 chr13 29684344 29684447 -90060451 + (TA)n Simple_repeat Simple_repeat 2 103 0 347 336 112 27 chr13 29684728 29684987 -90059911 - L1ME4a LINE L1 -576 5545 5265 186 43 0 0 chr13 29685086 29685109 -90059789 + (TG)n Simple_repeat Simple_repeat 2 24 0 2572 71 0 0 chr13 29685374 29685685 -90059213 - AluY SINE Alu 0 311 1 280 279 186 16 chr13 29687031 29687160 -90057738 - MIR SINE MIR -92 170 20 2466 83 0 3 chr13 29687736 29688038 -90056860 + AluSq SINE Alu 1 301 -12 262 235 91 61 chr13 29688422 29688554 -90056344 + MIR SINE MIR 65 200 -62 816 323 34 39 chr13 29688612 29689077 -90055821 - MLT1K LTR MaLR -24 564 102 21 0 0 0 chr13 29689451 29689472 -90055426 + AT_rich Low_complexity Low_complexity 1 21 0 932 277 97 28 chr13 29689993 29690389 -90054509 - MER57B LTR ERV1 0 434 13 1817 143 4 4 chr13 29690836 29691108 -90053790 + AluSx SINE Alu 1 272 -40 207 0 0 0 chr13 29691114 29691137 -90053761 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2236 115 0 7 chr13 29691527 29691823 -90053075 + AluSq SINE Alu 1 294 -19 861 271 79 51 chr13 29691873 29692445 -90052453 + HAL1 LINE L1 1126 1713 -794 2172 93 3 17 chr13 29693014 29693304 -90051594 + AluSx SINE Alu 16 301 -11 3375 124 2 71 chr13 29693308 29693589 -90051309 - MER4B LTR ERV1 -61 549 329 2060 129 7 0 chr13 29693589 29693883 -90051015 + AluSx SINE Alu 5 300 -12 3375 124 2 71 chr13 29693883 29694191 -90050707 - MER4B LTR ERV1 -281 329 1 1795 126 22 0 chr13 29694191 29694468 -90050430 - L1MB3 LINE L1 -271 5912 5630 2998 176 16 60 chr13 29694469 29695098 -90049800 + LTR9 LTR ERV1 1 601 -11 2092 112 24 19 chr13 29695107 29695494 -90049404 - L1MB3 LINE L1 -546 5634 5283 1594 172 17 24 chr13 29695494 29695791 -90049107 - AluJo SINE Alu -17 295 1 2092 112 24 19 chr13 29695791 29695902 -90048996 - L1MB3 LINE L1 -897 5283 5174 22 70 0 0 chr13 29696186 29696229 -90048669 + AT_rich Low_complexity Low_complexity 1 43 0 217 333 43 11 chr13 29698899 29698992 -90045906 + L3b LINE CR1 1368 1463 -120 432 270 0 0 chr13 29699614 29699714 -90045184 - MIR SINE MIR -33 229 130 660 217 94 57 chr13 29699996 29700208 -90044690 - MIR SINE MIR 0 262 43 251 268 41 21 chr13 29700790 29700887 -90044011 - MER94 DNA DNA -34 100 2 1827 166 0 25 chr13 29700956 29701275 -90043623 + AluJb SINE Alu 1 311 -1 2637 56 0 0 chr13 29702467 29702771 -90042127 - AluY SINE Alu -7 304 1 1018 54 78 0 chr13 29702855 29702984 -90041914 + MER85 DNA T2_type 1 139 0 184 203 63 101 chr13 29703583 29703662 -90041236 - L2 LINE L2 -10 3262 3187 1167 241 75 50 chr13 29703662 29704118 -90040780 + MLT1C LTR MaLR 1 467 0 1682 154 0 30 chr13 29704195 29704461 -90040437 + AluJo SINE Alu 16 273 -39 256 345 108 21 chr13 29709315 29709509 -90035389 - MIR SINE MIR -32 230 20 328 333 120 30 chr13 29710120 29710585 -90034313 + L2 LINE L2 1998 2504 -810 231 299 15 0 chr13 29710636 29710703 -90034195 - MIR SINE MIR -72 190 123 1959 135 0 4 chr13 29710708 29710982 -90033916 + AluSx SINE Alu 3 275 -37 1917 140 49 0 chr13 29711021 29711307 -90033591 + AluJo SINE Alu 1 300 -12 402 297 0 0 chr13 29711307 29711408 -90033490 - MIR SINE MIR -131 131 31 224 179 90 30 chr13 29711478 29711545 -90033353 - MIR SINE MIR -63 145 75 442 341 27 23 chr13 29711680 29711900 -90032998 + L3b LINE CR1 1299 1519 -64 585 271 28 14 chr13 29711971 29712189 -90032709 + MER102b DNA MER1_type 119 339 -2 1754 190 104 40 chr13 29715926 29716425 -90028473 - MER74A LTR ERVL -27 531 1 2105 83 36 53 chr13 29717412 29717537 -90027361 + L1MA2 LINE L1 5950 6076 -228 2059 138 0 20 chr13 29717537 29717842 -90027056 + AluJb SINE Alu 5 303 -9 2105 83 36 53 chr13 29717842 29718077 -90026821 + L1MA2 LINE L1 6076 6304 0 1060 211 26 8 chr13 29718160 29718426 -90026472 - LTR37B LTR ERV1 0 468 198 198 0 0 0 chr13 29718445 29718467 -90026431 + (A)n Simple_repeat Simple_repeat 1 22 0 864 215 16 0 chr13 29718489 29718675 -90026223 - LTR37B LTR ERV1 -271 197 9 217 328 16 0 chr13 29718698 29718759 -90026139 + L2 LINE L2 3008 3069 -203 2058 144 31 89 chr13 29718821 29719306 -90025592 - MER31B LTR ERV1 -9 457 1 2314 92 3 0 chr13 29719321 29719613 -90025285 - AluSp SINE Alu -20 293 1 399 273 43 43 chr13 29719652 29719791 -90025107 + L2 LINE L2 3133 3271 -1 369 280 170 10 chr13 29720432 29720632 -90024266 + L2 LINE L2 2053 2284 -1030 792 219 38 162 chr13 29720731 29721206 -90023692 + MLT1E LTR MaLR 177 592 -1 266 279 116 0 chr13 29721206 29721292 -90023606 + L2 LINE L2 2282 2377 -937 295 256 93 32 chr13 29721953 29722142 -90022756 - MIR SINE MIR -28 234 40 194 312 108 11 chr13 29723653 29723746 -90021152 - L2 LINE L2 -35 3237 3136 424 261 0 0 chr13 29724136 29724228 -90020670 + MIR SINE MIR 64 155 -107 1916 153 29 63 chr13 29724241 29724286 -90020612 - MLT2C1 LTR ERVL 0 397 352 342 0 0 0 chr13 29724286 29724324 -90020574 + (TG)n Simple_repeat Simple_repeat 2 39 0 1916 153 29 63 chr13 29724324 29724381 -90020517 - MLT2C1 LTR ERVL -45 352 295 1976 107 92 0 chr13 29724381 29724662 -90020236 + AluSq SINE Alu 1 307 -6 1916 153 29 63 chr13 29724662 29724969 -90019929 - MLT2C1 LTR ERVL -102 295 1 748 195 31 0 chr13 29725103 29725231 -90019667 + FLAM_A SINE Alu 1 132 -1 561 216 194 57 chr13 29726068 29726295 -90018603 + MIR SINE MIR 5 262 0 748 120 0 0 chr13 29726392 29726509 -90018389 - L1M3 LINE L1 -726 5442 5326 * 979 138 6 12 chr13 29726497 29726664 -90018234 + L1MB1 LINE L1 5901 6066 -102 255 231 33 11 chr13 29727042 29727133 -90017765 + (CCG)n Simple_repeat Simple_repeat 3 95 0 25 31 0 0 chr13 29727700 29727732 -90017166 + AT_rich Low_complexity Low_complexity 1 32 0 194 276 35 35 chr13 29728051 29728109 -90016789 - L2 LINE L2 -19 3294 3237 315 301 93 98 chr13 29729509 29729897 -90015001 - L2 LINE L2 -1 3271 2886 2144 133 0 0 chr13 29730560 29730853 -90014045 + AluSx SINE Alu 1 293 -19 198 0 0 0 chr13 29730853 29730875 -90014023 + (TA)n Simple_repeat Simple_repeat 2 23 0 290 224 47 129 chr13 29732135 29732188 -90012710 - MIR SINE MIR -6 256 200 2532 4 0 0 chr13 29732188 29732455 -90012443 - AluYa5 SINE Alu -6 305 39 290 224 47 129 chr13 29732455 29732571 -90012327 - MIR SINE MIR -62 200 101 242 312 172 45 chr13 29732857 29733014 -90011884 - MIR SINE MIR 0 262 86 2964 203 77 16 chr13 29733020 29733769 -90011129 + Charlie1a DNA MER1_type 29 823 -632 1646 138 91 13 chr13 29733767 29734150 -90010748 + Charlie1a DNA MER1_type 1041 1453 -2 * 338 242 53 0 chr13 29734364 29734483 -90010415 - MLT1I LTR MaLR -9 441 313 237 135 0 0 chr13 29734608 29734645 -90010253 - MLT1I LTR MaLR -253 156 120 3971 86 40 100 chr13 29734697 29735370 -90009528 - MER51A LTR ERV1 -1 633 1 208 257 86 43 chr13 29735445 29735515 -90009383 - L2 LINE L2 -44 3228 3156 281 376 138 18 chr13 29736657 29737207 -90007691 - L2 LINE L2 -477 2837 2222 2652 220 57 52 chr13 29737362 29737774 -90007124 - MER21B LTR ERV1 -124 739 320 2032 141 0 16 chr13 29737774 29738080 -90006818 - AluSq SINE Alu -6 307 7 2652 220 57 52 chr13 29738080 29738402 -90006496 - MER21B LTR ERV1 -543 320 1 593 257 123 11 chr13 29738515 29738702 -90006196 + LTR67 LTR ERVL 4 211 -346 378 206 91 101 chr13 29738768 29738987 -90005911 + LTR67 LTR ERVL 329 545 -12 2430 85 0 19 chr13 29739648 29739964 -90004934 - AluSg SINE Alu 0 310 1 2047 116 29 0 chr13 29740552 29740859 -90004039 - AluSx SINE Alu 0 315 1 527 304 19 5 chr13 29742432 29742690 -90002208 - MLT1I LTR MaLR -27 382 85 527 294 165 3 chr13 29742876 29743192 -90001706 - MLT1I LTR MaLR -14 395 29 1455 165 11 26 chr13 29743221 29743494 -90001404 - AluJb SINE Alu -24 288 20 4052 110 111 105 chr13 29743495 29744870 -90000028 + pTR5 LTR ERV1 66 2438 0 243 88 0 0 chr13 29744870 29744904 -89999994 - AluJb SINE Alu -99 34 1 431 232 50 0 chr13 29745421 29745520 -89999378 - ORSL DNA AcHobo 0 275 172 2226 117 3 0 chr13 29745520 29745819 -89999079 + AluSp SINE Alu 1 300 -13 1854 116 9 104 chr13 29745835 29746029 -89998869 - AluSx SINE Alu -6 296 144 2331 90 0 0 chr13 29746029 29746317 -89998581 - AluSx SINE Alu -24 288 1 1854 116 9 104 chr13 29746317 29746449 -89998449 - AluSx SINE Alu -158 144 1 241 294 0 15 chr13 29746944 29747012 -89997886 - ORSL DNA AcHobo 0 275 209 2491 75 10 0 chr13 29747044 29747349 -89997549 + AluY SINE Alu 1 308 -3 762 263 134 15 chr13 29747360 29747695 -89997203 - MER57B LTR ERV1 -4 430 56 854 179 73 51 chr13 29748257 29748354 -89996544 + MER33 DNA MER1_type 41 134 -2451 1849 126 14 18 chr13 29748354 29748632 -89996266 + AluSx SINE Alu 1 277 -35 342 0 0 0 chr13 29748638 29748676 -89996222 + (TA)n Simple_repeat Simple_repeat 1 38 0 854 179 73 51 chr13 29748676 29748845 -89996053 + MER33 DNA MER1_type 138 320 -4 849 104 0 0 chr13 29748901 29749026 -89995872 - LTR12 LTR ERV1 0 714 590 4536 111 49 35 chr13 29749026 29749703 -89995195 - LTR12 LTR ERV1 -2 686 1 786 292 92 49 chr13 29749703 29750166 -89994732 + L2 LINE L2 2719 3202 -111 2136 153 110 5 chr13 29750166 29750557 -89994341 - MSTB1 LTR MaLR 0 432 1 786 292 92 49 chr13 29750557 29750674 -89994224 + L2 LINE L2 3202 3313 0 2306 82 0 26 chr13 29751644 29751950 -89992948 - AluY SINE Alu -13 298 1 484 273 76 29 chr13 29752188 29752360 -89992538 + MIR SINE MIR 60 239 -23 687 244 78 116 chr13 29752551 29752570 -89992328 + MLT1K LTR MaLR 308 326 -262 2234 105 10 0 chr13 29752570 29752864 -89992034 - AluSx SINE Alu -15 297 1 687 244 78 116 chr13 29752864 29753164 -89991734 + MLT1K LTR MaLR 326 588 0 233 184 0 0 chr13 29753621 29753659 -89991239 + L1 LINE L1 4113 4150 -1996 377 297 36 10 chr13 29754483 29754626 -89990272 - MIR SINE MIR -65 143 2 270 268 118 77 chr13 29755318 29755426 -89989472 - MIR SINE MIR 0 262 160 2507 63 3 0 chr13 29755426 29755728 -89989170 - AluSq SINE Alu -10 303 1 270 268 118 77 chr13 29755728 29755839 -89989059 - MIR SINE MIR -102 160 34 251 281 73 0 chr13 29755946 29756028 -89988870 + L2 LINE L2 3160 3247 -25 2223 160 104 18 chr13 29756239 29756730 -89988168 - MER51A LTR ERV1 0 634 90 2127 111 37 3 chr13 29757225 29757559 -89987339 + AluSc SINE Alu 1 344 0 182 180 40 0 chr13 29757638 29757688 -89987210 + GA-rich Low_complexity Low_complexity 2 53 0 2415 94 0 0 chr13 29758001 29758300 -89986598 - AluSc SINE Alu -5 304 6 2199 116 0 3 chr13 29760196 29760497 -89984401 + AluSg SINE Alu 1 300 -10 689 165 36 173 chr13 29760829 29761077 -89983821 + MER20 DNA MER1_type 6 219 0 242 273 211 25 chr13 29761115 29761219 -89983679 - L2 LINE L2 0 3313 3230 288 0 0 0 chr13 29761219 29761251 -89983647 + (CA)n Simple_repeat Simple_repeat 2 33 0 242 273 211 25 chr13 29761251 29761388 -89983510 - L2 LINE L2 -83 3230 3027 333 240 48 40 chr13 29761389 29761514 -89983384 - MLT1L LTR MaLR -14 601 476 423 272 23 46 chr13 29761721 29761894 -89983004 - MLT1K LTR MaLR -340 248 80 206 219 76 129 chr13 29761903 29762113 -89982785 - L2 LINE L2 -253 3060 2862 28 48 0 0 chr13 29762974 29763016 -89981882 + AT_rich Low_complexity Low_complexity 1 42 0 558 234 0 0 chr13 29763041 29763148 -89981750 - FLAM_A SINE Alu -35 107 1 990 175 0 0 chr13 29763157 29763317 -89981581 - FRAM SINE Alu -16 160 1 291 231 130 28 chr13 29763533 29763641 -89981257 - MIR SINE MIR -60 202 84 348 278 0 37 chr13 29763715 29763823 -89981075 - MIR SINE MIR -140 122 19 317 203 139 0 chr13 29764134 29764213 -89980685 - MIR SINE MIR -83 179 90 2404 89 7 0 chr13 29768901 29769204 -89975694 - AluSg SINE Alu -5 305 1 675 228 100 58 chr13 29769418 29769729 -89975169 + MER33 DNA MER1_type 1 324 0 1107 153 0 0 chr13 29770896 29771059 -89973839 - AluSp SINE Alu -16 297 135 2568 47 0 0 chr13 29771070 29771366 -89973532 - AluY SINE Alu -15 296 1 229 247 45 0 chr13 29772505 29772594 -89972304 + CT-rich Low_complexity Low_complexity 1 93 0 737 177 9 0 chr13 29776891 29777004 -89967894 + FRAM SINE Alu 6 119 -57 189 0 0 0 chr13 29778151 29778172 -89966726 + (A)n Simple_repeat Simple_repeat 1 21 0 314 222 244 22 chr13 29780678 29780768 -89964130 - MIR SINE MIR -141 121 12 1635 132 24 68 chr13 29781287 29781582 -89963316 - AluJo SINE Alu -30 282 1 215 198 221 58 chr13 29783580 29783666 -89961232 + MIR SINE MIR 32 131 -77 315 71 0 0 chr13 29784080 29784122 -89960776 + (TG)n Simple_repeat Simple_repeat 1 42 0 26 64 0 0 chr13 29786962 29787009 -89957889 + AT_rich Low_complexity Low_complexity 1 47 0 495 283 111 25 chr13 29787699 29787897 -89957001 - L2 LINE L2 0 3313 3099 406 274 149 6 chr13 29788024 29788192 -89956706 + MIR SINE MIR 40 231 -31 291 273 129 22 chr13 29789412 29789551 -89955347 - L1ME4a LINE L1 0 6121 5968 285 184 75 20 chr13 29789678 29789772 -89955126 - L1ME4a LINE L1 -323 5798 5695 267 252 15 7 chr13 29790391 29790477 -89954421 + A-rich Low_complexity Low_complexity 1 86 0 22 80 0 0 chr13 29790551 29790601 -89954297 + GC_rich Low_complexity Low_complexity 1 50 0 24 96 0 0 chr13 29790833 29790906 -89953992 + GC_rich Low_complexity Low_complexity 1 73 0 220 282 141 28 chr13 29792612 29792754 -89952144 + MIR3 SINE MIR 37 194 -14 543 246 20 80 chr13 29793039 29793238 -89951660 + MLT1J LTR MaLR 241 427 -84 267 279 130 72 chr13 29794242 29794482 -89950416 - L2 LINE L2 -2 3311 3086 918 171 42 65 chr13 29794482 29794699 -89950199 + MER20 DNA MER1_type 4 215 -4 267 279 130 72 chr13 29794699 29795233 -89949665 - L2 LINE L2 -227 3086 2380 320 212 20 10 chr13 29795233 29795332 -89949566 - L1MB3 LINE L1 -3 6180 6081 267 279 130 72 chr13 29795332 29795516 -89949382 - L2 LINE L2 -933 2380 2208 641 197 0 95 chr13 29795532 29795563 -89949335 - FLAM_A SINE Alu -169 133 101 2127 131 0 7 chr13 29795563 29795861 -89949037 + AluSx SINE Alu 1 296 -16 641 197 0 95 chr13 29795861 29795976 -89948922 - FLAM_A SINE Alu -201 101 1 204 40 0 0 chr13 29796141 29796166 -89948732 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 421 229 39 120 chr13 29796495 29796663 -89948235 - MER5A DNA MER1_type 0 189 1 2016 81 57 50 chr13 29796749 29797046 -89947852 + AluSg SINE Alu 3 301 -9 414 242 288 0 chr13 29798209 29798362 -89946536 - MIR SINE MIR -26 236 40 1451 165 66 53 chr13 29801028 29801331 -89943567 - AluJo SINE Alu -5 307 1 2155 114 7 7 chr13 29801401 29801699 -89943199 + AluSx SINE Alu 1 298 -14 1464 182 40 47 chr13 29802398 29802556 -89942342 - AluJo SINE Alu -16 296 139 2396 95 0 0 chr13 29802556 29802861 -89942037 - AluSg SINE Alu -5 305 1 1464 182 40 47 chr13 29802861 29802998 -89941900 - AluJo SINE Alu -173 139 3 294 143 0 0 chr13 29803307 29803356 -89941542 + (TG)n Simple_repeat Simple_repeat 2 50 0 278 241 60 24 chr13 29803506 29803589 -89941309 - L2 LINE L2 0 3272 3187 1806 168 10 0 chr13 29803601 29803893 -89941005 + AluJb SINE Alu 6 300 -12 475 250 64 29 chr13 29804040 29804212 -89940686 - L2 LINE L2 -94 3219 3042 2331 100 0 0 chr13 29805798 29806098 -89938800 - AluSx SINE Alu -12 300 1 288 303 57 0 chr13 29806640 29806762 -89938136 - MIR SINE MIR -50 212 84 333 111 0 0 chr13 29806767 29806821 -89938077 - L1PA15 LINE L1 0 6165 6112 7577 171 39 10 chr13 29806827 29808572 -89936326 - L1PA15 LINE L1 -2 6163 4354 2197 117 13 0 chr13 29808572 29808870 -89936028 - AluSq SINE Alu -11 302 1 7577 171 39 10 chr13 29808870 29809358 -89935540 - L1PA15 LINE L1 -1811 4354 3882 1929 183 14 3 chr13 29809358 29809713 -89935185 + L1PA15 LINE L1 3513 3871 -2275 624 224 141 5 chr13 29809915 29810107 -89934791 + MIR SINE MIR 9 226 -36 348 244 84 25 chr13 29810300 29810419 -89934479 - MIR SINE MIR -8 254 129 546 312 10 25 chr13 29811332 29811531 -89933367 + MIR3 SINE MIR 10 205 -3 2237 110 3 0 chr13 29812373 29812674 -89932224 - AluSg SINE Alu -8 302 1 185 239 22 76 chr13 29812926 29813018 -89931880 - MIR3 SINE MIR -37 171 85 333 290 113 21 chr13 29814649 29814835 -89930063 + L3 LINE CR1 768 970 -607 201 94 0 0 chr13 29815015 29815047 -89929851 + (TG)n Simple_repeat Simple_repeat 1 32 0 219 208 0 62 chr13 29815188 29815236 -89929662 + L2 LINE L2 3210 3254 -18 329 278 158 64 chr13 29816403 29816637 -89928261 + L2 LINE L2 3017 3272 0 880 183 0 0 chr13 29816901 29817032 -89927866 - FLAM_A SINE Alu -2 131 1 538 253 156 18 chr13 29817296 29817627 -89927271 - L1ME3A LINE L1 -165 5956 5588 202 185 0 37 chr13 29818037 29818091 -89926807 + A-rich Low_complexity Low_complexity 5 56 0 2023 137 34 94 chr13 29818675 29819090 -89925808 - MLT1B LTR MaLR 0 390 1 2190 114 0 10 chr13 29819763 29820069 -89924829 + AluSx SINE Alu 1 303 -9 33 0 0 0 chr13 29820129 29820162 -89924736 + AT_rich Low_complexity Low_complexity 1 33 0 198 97 0 0 chr13 29821015 29821027 -89923871 + (T)n Simple_repeat Simple_repeat 1 12 -19 2347 102 0 0 chr13 29821027 29821320 -89923578 + AluSc SINE Alu 1 293 -16 198 97 0 0 chr13 29821320 29821338 -89923560 + (T)n Simple_repeat Simple_repeat 11 31 0 2550 139 65 7 chr13 29822522 29822925 -89921973 - MSTA LTR MaLR -2 426 1 461 307 64 23 chr13 29823890 29824108 -89920790 - MLT1J LTR MaLR -282 229 3 2484 77 0 10 chr13 29824306 29824618 -89920280 - AluY SINE Alu -2 309 1 242 268 111 63 chr13 29825471 29825661 -89919237 - L2 LINE L2 -904 2410 2212 1319 194 88 25 chr13 29825975 29826294 -89918604 - L1MB2 LINE L1 -1 6170 5832 2119 112 3 0 chr13 29827143 29827437 -89917461 + AluSx SINE Alu 1 295 -17 2174 114 0 3 chr13 29827652 29827949 -89916949 - AluSq SINE Alu -13 300 5 815 149 0 0 chr13 29828974 29829088 -89915810 + FLAM_A SINE Alu 16 129 -13 195 42 0 0 chr13 29830766 29830790 -89914108 + (T)n Simple_repeat Simple_repeat 1 24 0 225 175 0 0 chr13 29831156 29831196 -89913702 - L2 LINE L2 -3 3310 3271 197 337 74 32 chr13 29831939 29832034 -89912864 - L2 LINE L2 -191 3081 2983 384 246 120 7 chr13 29832269 29832411 -89912487 - MIR SINE MIR -1 261 104 600 269 41 0 chr13 29832578 29832749 -89912149 + L2 LINE L2 3120 3297 -16 378 325 179 5 chr13 29832766 29832978 -89911920 - MIR SINE MIR -10 252 4 2368 96 0 0 chr13 29834509 29834810 -89910088 + AluSq SINE Alu 1 301 -12 225 154 0 0 chr13 29835036 29835075 -89909823 + (TATATG)n Simple_repeat Simple_repeat 1 39 0 351 136 0 0 chr13 29837216 29837275 -89907623 + (T)n Simple_repeat Simple_repeat 1 59 0 1957 121 21 0 chr13 29837583 29837872 -89907026 - AluSc SINE Alu -14 295 1 407 342 70 56 chr13 29838623 29838980 -89905918 - L2 LINE L2 -15 3257 2896 317 256 111 22 chr13 29839043 29839133 -89905765 + L2 LINE L2 3169 3266 -6 22 80 0 0 chr13 29840306 29840356 -89904542 + AT_rich Low_complexity Low_complexity 1 50 0 1884 154 0 3 chr13 29840466 29840774 -89904124 - AluSx SINE Alu 0 307 1 32408 93 20 31 chr13 29840826 29843608 -89901290 + L1PA7 LINE L1 438 3249 -2905 2387 80 3 19 chr13 29843608 29843920 -89900978 + AluY SINE Alu 1 307 -4 32408 93 20 31 chr13 29843920 29845068 -89899830 + L1PA7 LINE L1 3249 4408 -1746 2000 107 48 7 chr13 29845068 29845358 -89899540 + AluSg SINE Alu 1 302 -8 32408 93 20 31 chr13 29845358 29847222 -89897676 + L1PA7 LINE L1 4408 6153 -1 1007 286 48 13 chr13 29848139 29848454 -89896444 - L2 LINE L2 -3 3310 2985 279 295 74 25 chr13 29848457 29848579 -89896319 + L2 LINE L2 2278 2405 -909 394 331 109 26 chr13 29848881 29849192 -89895706 + L2 LINE L2 2315 2651 -663 561 299 67 55 chr13 29849193 29849775 -89895123 - L1MEc LINE L1 -4772 2350 1762 226 298 35 0 chr13 29849836 29849950 -89894948 - L1MEc LINE L1 -4961 1462 1345 272 329 15 22 chr13 29850475 29850498 -89894400 - L1MEc LINE L1 -5933 998 976 381 29 0 116 chr13 29850498 29850567 -89894331 - L1PA6 LINE L1 0 6154 6094 272 329 15 22 chr13 29850567 29850680 -89894218 - L1MEc LINE L1 -5955 976 863 231 284 60 0 chr13 29850786 29850853 -89894045 + L2 LINE L2 2870 2940 -332 203 265 0 0 chr13 29851166 29851215 -89893683 + L2 LINE L2 3265 3313 0 249 305 72 34 chr13 29851893 29852012 -89892886 + MIR SINE MIR 35 157 -51 254 298 0 122 chr13 29852560 29852691 -89892207 + LTR67 LTR ERVL 62 176 -381 320 315 30 30 chr13 29852845 29853010 -89891888 + LTR67 LTR ERVL 387 551 -6 2008 158 58 11 chr13 29854564 29854911 -89889987 - MLT1A1 LTR MaLR -2 363 1 362 327 142 5 chr13 29855491 29855702 -89889196 - MLT1L LTR MaLR 0 615 376 2156 58 6 95 chr13 29856674 29856999 -89887899 - AluY SINE Alu -15 296 1 2279 106 0 0 chr13 29857438 29857731 -89887167 - AluSx SINE Alu -8 304 12 1302 192 60 36 chr13 29858515 29858817 -89886081 - AluJo SINE Alu -3 309 1 1941 179 20 11 chr13 29860297 29860648 -89884250 + MLT1A1 LTR MaLR 11 364 -1 2043 152 53 52 chr13 29861247 29861697 -89883201 - MER61C LTR ERV1 0 434 1 560 281 30 10 chr13 29861715 29861918 -89882980 - L1ME3A LINE L1 -310 5860 5654 272 197 14 42 chr13 29861923 29861994 -89882904 + MER112 DNA MER1_type 1 69 -191 250 242 189 0 chr13 29862009 29862104 -89882794 - L1MDa LINE L1 -3312 3228 3116 494 286 115 24 chr13 29862273 29862612 -89882286 - L1MDa LINE L1 -3646 2894 2525 2238 109 0 10 chr13 29862651 29862962 -89881936 - AluSg1 SINE Alu -1 308 1 312 238 126 22 chr13 29863285 29863508 -89881390 - L1MDa LINE L1 -4441 2099 1854 2330 102 0 16 chr13 29863525 29863840 -89881058 - AluSg SINE Alu 0 310 1 443 276 107 52 chr13 29863889 29864310 -89880588 - L1MDa LINE L1 -5235 1295 852 252 236 0 56 chr13 29864777 29864849 -89880049 - MER116 DNA Mariner -11 69 2 3000 127 7 0 chr13 29865160 29865601 -89879297 - L1PA16 LINE L1 -20 6146 5703 451 287 84 7 chr13 29865677 29865820 -89879078 - MIR SINE MIR -84 178 25 231 36 0 0 chr13 29866231 29866259 -89878639 + (CA)n Simple_repeat Simple_repeat 2 29 0 188 156 0 0 chr13 29866796 29866828 -89878070 - MIR SINE MIR -5 257 226 22 0 0 0 chr13 29868144 29868166 -89876732 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr13 29868365 29868398 -89876500 + AT_rich Low_complexity Low_complexity 1 33 0 7416 107 26 16 chr13 29869777 29870833 -89874065 - MER11C LTR ERVK -4 1067 1 2430 55 0 36 chr13 29872804 29873113 -89871785 + AluY SINE Alu 1 298 -13 362 269 93 19 chr13 29873333 29873441 -89871457 - L2 LINE L2 -6 3307 3192 29 28 0 0 chr13 29873969 29874005 -89870893 + AT_rich Low_complexity Low_complexity 1 36 0 1398 136 0 15 chr13 29875713 29875919 -89868979 + L1PB4 LINE L1 5953 6155 -1 234 0 0 0 chr13 29876051 29876077 -89868821 + (A)n Simple_repeat Simple_repeat 1 26 0 282 250 18 134 chr13 29876610 29876722 -89868176 + L2 LINE L2 3174 3272 0 408 326 14 7 chr13 29876861 29876999 -89867899 + MIR3 SINE MIR 46 184 -24 3851 255 84 20 chr13 29877341 29878615 -89866283 + L1MEc LINE L1 45 1399 -4997 6514 218 25 23 chr13 29878674 29880181 -89864717 + L1M2 LINE L1 1067 2575 -4274 484 193 0 0 chr13 29880182 29880270 -89864628 + L1PA15-16 LINE L1 2817 2904 -3945 31937 104 18 57 chr13 29880313 29886713 -89858185 - L1PA7 LINE L1 0 6154 12 180 0 0 0 chr13 29886725 29886745 -89858153 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1287 193 30 37 chr13 29886750 29887050 -89857848 - MLT1A1 LTR MaLR -67 298 1 2637 134 5 30 chr13 29887201 29887640 -89857258 - L1MB2 LINE L1 0 6171 5744 1190 132 103 62 chr13 29887654 29887897 -89857001 - L1MB2 LINE L1 -528 5655 5403 3847 181 86 27 chr13 29887927 29888717 -89856181 - MER21B LTR ERV1 -26 837 1 17363 184 29 19 chr13 29888796 29890806 -89854092 - MER21A-int LTR ERV1 -57 4134 2079 2591 184 67 95 chr13 29890806 29891554 -89853344 - LTR8A LTR ERV1 0 727 1 17363 184 29 19 chr13 29891554 29892759 -89852139 - MER21A-int LTR ERV1 -2112 2079 887 43967 31 21 1 chr13 29892760 29898790 -89846108 + L1HS LINE L1 2 6155 0 5019 184 38 6 chr13 29898815 29899682 -89845216 - MER21A-int LTR ERV1 -3296 895 1 3883 189 65 13 chr13 29899682 29900426 -89844472 - MER21A LTR ERV1 0 931 150 801 216 65 68 chr13 29900429 29901150 -89843748 + MER52A LTR ERV1 1 751 -269 382 261 294 43 chr13 29901161 29901532 -89843366 + MER52A LTR ERV1 1292 1755 0 745 99 21 71 chr13 29901533 29901674 -89843224 - MER21A LTR ERV1 -785 146 13 4530 123 45 0 chr13 29902113 29902794 -89842104 - LTR62 LTR ERVK -4 715 4 10850 99 9 20 chr13 29903719 29905227 -89839671 + THE1A-int LTR MaLR 90 1580 0 2564 109 3 8 chr13 29905227 29905584 -89839314 + THE1A LTR MaLR 1 355 0 8783 111 26 83 chr13 29905585 29906852 -89838046 + THE1A-int LTR MaLR 2 1340 -240 216 0 0 0 chr13 29906852 29906876 -89838022 + (TA)n Simple_repeat Simple_repeat 1 24 0 617 67 0 0 chr13 29906878 29906953 -89837945 - AluSp/q SINE Alu -18 295 221 8783 111 26 83 chr13 29906953 29907134 -89837764 + THE1A-int LTR MaLR 1341 1439 -141 25 0 0 0 chr13 29907849 29907874 -89837024 + AT_rich Low_complexity Low_complexity 1 25 0 204 296 0 0 chr13 29908743 29908797 -89836101 - L2 LINE L2 -4 3309 3256 234 245 0 0 chr13 29909581 29909634 -89835264 - MER117 DNA MER1_type -8 189 137 802 323 135 25 chr13 29909846 29910647 -89834251 + L2 LINE L2 1870 2758 -556 719 182 8 143 chr13 29911826 29912084 -89832814 - MER112 DNA MER1_type -36 224 2 1654 123 25 0 chr13 29912289 29912533 -89832365 - L1PB1 LINE L1 0 6151 5902 354 257 40 46 chr13 29913938 29914113 -89830785 - LTR33A LTR ERVL -18 505 332 233 0 62 0 chr13 29915158 29915190 -89829708 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1504 164 0 9 chr13 29915219 29915451 -89829447 - AluJo SINE Alu -82 230 1 262 266 83 18 chr13 29916499 29916608 -89828290 + L1MB8 LINE L1 6061 6176 -2 2326 98 7 0 chr13 29916720 29917025 -89827873 - AluY SINE Alu -4 307 1 3038 172 13 7 chr13 29917481 29918028 -89826870 - MER44D DNA MER2_type 0 605 1 184 336 0 58 chr13 29918526 29918630 -89826268 + MIR SINE MIR 95 192 -70 2291 108 7 3 chr13 29918856 29919162 -89825736 + AluSx SINE Alu 1 307 -5 2134 205 101 137 chr13 29922683 29924314 -89820584 + L1ME3 LINE L1 3465 5033 -1113 898 192 101 0 chr13 29924314 29924512 -89820386 + MER20 DNA MER1_type 1 218 -1 2134 205 101 137 chr13 29924512 29924589 -89820309 + L1ME3 LINE L1 5033 5111 -1035 718 206 8 0 chr13 29924604 29924730 -89820168 + FLAM_C SINE Alu 7 133 -10 1368 227 134 49 chr13 29924731 29924861 -89820037 + L1ME3 LINE L1 5107 5225 -937 2018 223 94 18 chr13 29924861 29925412 -89819486 + MLT1E LTR MaLR 1 593 0 1368 227 134 49 chr13 29925412 29925746 -89819152 + L1ME3 LINE L1 5225 5529 -633 906 198 127 0 chr13 29925746 29925943 -89818955 + MER58A DNA MER1_type 1 222 -2 1368 227 134 49 chr13 29925943 29926275 -89818623 + L1ME3 LINE L1 5529 5976 -186 7923 122 13 21 chr13 29927076 29928365 -89816533 + L1PA10 LINE L1 4103 5381 -765 1384 96 15 10 chr13 29928365 29928559 -89816339 + L1PA10 LINE L1 5957 6154 -14 1512 121 49 0 chr13 29928991 29929215 -89815683 - LTR12 LTR ERV1 0 714 480 392 194 31 20 chr13 29929216 29929314 -89815584 - LTR30 LTR ERV1 -80 642 544 6851 133 29 87 chr13 29929314 29930678 -89814220 - pTR5 LTR ERV1 -413 2025 741 918 144 19 31 chr13 29930828 29930988 -89813910 + MER61A LTR ERV1 186 343 0 41549 45 37 0 chr13 29931036 29936965 -89807933 + L1PA4 LINE L1 1 6155 0 2477 118 32 52 chr13 29937655 29938061 -89806837 + MER48 LTR ERV1 1 398 0 408 278 198 22 chr13 29938360 29938630 -89806268 - L1MC4 LINE L1 -850 7042 6678 456 267 76 83 chr13 29938671 29938954 -89805944 + L1MC5 LINE L1 7302 7585 -376 2398 93 0 0 chr13 29938954 29939245 -89805653 + AluSc SINE Alu 1 291 -18 456 267 76 83 chr13 29939245 29939519 -89805379 + L1MC5 LINE L1 7585 7857 -104 2254 176 39 10 chr13 29939519 29939934 -89804964 - LTR3 LTR ERVK 0 429 3 456 267 76 83 chr13 29939934 29939990 -89804908 + L1MC5 LINE L1 7857 7912 -49 212 291 200 40 chr13 29940084 29940479 -89804419 + L2 LINE L2 2384 2841 -473 757 249 31 35 chr13 29940732 29940961 -89803937 + MIR SINE MIR 34 261 -1 207 261 206 0 chr13 29941014 29941106 -89803792 - MIR SINE MIR -9 253 143 278 274 0 32 chr13 29941204 29941299 -89803599 - MIR SINE MIR -113 149 58 886 125 0 0 chr13 29941845 29941965 -89802933 + LTR1 LTR ERV1 666 785 0 354 125 0 0 chr13 29943311 29943359 -89801539 + THE1A LTR MaLR 308 355 0 7900 171 163 3 chr13 29943359 29944721 -89800177 + THE1B-int LTR MaLR 1 1580 0 2358 99 48 14 chr13 29944721 29945073 -89799825 + THE1B LTR MaLR 1 364 0 447 268 9 0 chr13 29946653 29946765 -89798133 - MIR SINE MIR -5 257 145 1709 171 42 10 chr13 29946772 29947082 -89797816 + MSTA LTR MaLR 109 428 0 626 356 63 36 chr13 29947082 29947638 -89797260 + PRIMA41-int LTR ERV1 1137 1707 -5415 5015 122 34 1 chr13 29948050 29948811 -89796087 - L1PB3 LINE L1 0 6154 5369 545 283 86 59 chr13 29948815 29949353 -89795545 + PRIMA41-int LTR ERV1 4431 5020 -2921 414 260 42 65 chr13 29949732 29949948 -89794950 + PRIMA41-int LTR ERV1 5356 5570 -2186 3892 102 24 33 chr13 29949982 29950563 -89794335 + PRIMA41-int LTR ERV1 7168 7743 -377 1988 120 14 4 chr13 29950672 29950948 -89793950 + AluSq SINE Alu 1 279 -34 212 0 0 35 chr13 29950953 29950982 -89793916 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 1204 87 0 17 chr13 29951207 29951379 -89793519 + PRIMA41-int LTR ERV1 7768 7936 -184 801 175 12 24 chr13 29951384 29951550 -89793348 + LOR1b LTR ERV1 298 461 0 203 310 58 39 chr13 29952485 29952640 -89792258 + MIR SINE MIR 20 177 -85 975 133 18 24 chr13 29953324 29953490 -89791408 + MER52C LTR ERV1 1 165 -1113 2565 131 187 20 chr13 29953590 29954077 -89790821 + MER52C LTR ERV1 711 1278 0 3327 126 53 11 chr13 29954077 29954624 -89790274 + MER52C-int LTR ERV1 2 571 -6520 5912 156 68 13 chr13 29954734 29956088 -89788810 + MER52C-int LTR ERV1 1698 3204 -3887 1259 120 10 14 chr13 29956095 29956303 -89788595 + MER52-int LTR ERV1 795 1001 -6090 439 291 54 85 chr13 29958137 29958491 -89786407 - L2 LINE L2 -358 2956 2614 1698 169 7 4 chr13 29959774 29960052 -89784846 - AluJo SINE Alu -31 281 3 32 0 0 0 chr13 29960635 29960667 -89784231 + AT_rich Low_complexity Low_complexity 1 32 0 2584 200 6 12 chr13 29963043 29963562 -89781336 - MER82 DNA MER2_type -136 517 2 649 252 69 3 chr13 29963565 29963768 -89781130 - L2 LINE L2 -2001 1313 1031 198 0 0 0 chr13 29963799 29963821 -89781077 + (TA)n Simple_repeat Simple_repeat 1 22 0 29 0 0 0 chr13 29963861 29963890 -89781008 + AT_rich Low_complexity Low_complexity 1 29 0 483 148 13 1 chr13 29964125 29964214 -89780684 - L1P1 LINE L1 -684 5471 5383 1024 188 56 28 chr13 29965271 29965484 -89779414 + AluJo SINE Alu 1 219 -93 2028 133 0 35 chr13 29965537 29965852 -89779046 - AluJb SINE Alu -8 304 1 430 204 19 56 chr13 29965955 29966063 -89778835 + MIR SINE MIR 9 112 -150 1317 104 9 5 chr13 29966130 29966341 -89778557 - LTR1 LTR ERV1 -573 212 1 1685 139 28 0 chr13 29966591 29966878 -89778020 + L1MA5A LINE L1 6000 6294 -3 4622 192 35 42 chr13 29967133 29967701 -89777197 - L1M4 LINE L1 -1091 5055 4485 1558 99 41 0 chr13 29967701 29967922 -89776976 - MER30 DNA MER1_type 0 230 1 4622 192 35 42 chr13 29967922 29968689 -89776209 - L1M4 LINE L1 -1661 4485 3729 262 282 0 0 chr13 29968685 29968770 -89776128 - L1M4 LINE L1 -3558 2588 2504 * 2328 92 3 0 chr13 29968771 29969066 -89775832 - AluSp SINE Alu -17 296 1 3563 102 25 7 chr13 29969217 29969765 -89775133 - LTR9B LTR ERV1 -86 558 1 4226 141 7 44 chr13 29969766 29970168 -89774730 - HUERS-P3b LTR ERV1 -7 7411 6995 2429 90 0 0 chr13 29970168 29970479 -89774419 - AluY SINE Alu 0 311 1 4226 141 7 44 chr13 29970479 29970491 -89774407 - HUERS-P3b LTR ERV1 -423 6995 6984 2332 68 0 29 chr13 29970491 29970798 -89774100 - AluY SINE Alu -12 299 2 4226 141 7 44 chr13 29970798 29971129 -89773769 - HUERS-P3b LTR ERV1 -434 6984 6693 9513 107 49 13 chr13 29971277 29973007 -89771891 - HUERS-P3b LTR ERV1 -426 4589 3101 305 256 43 37 chr13 29973011 29973175 -89771723 - L1M4 LINE L1 -3700 2446 2282 612 192 107 34 chr13 29973213 29973390 -89771508 + Tigger3(Golem) DNA MER2_type 1 2847 -182 6691 104 4 66 chr13 29973390 29974525 -89770373 - Charlie3 DNA MER1_type -4 2706 1642 2066 87 21 14 chr13 29974526 29974814 -89770084 - AluSx SINE Alu -9 303 14 303 87 0 0 chr13 29974828 29974874 -89770024 + MADE1 DNA Mariner 31 76 -4 692 258 50 0 chr13 29976093 29976275 -89768623 + MIR SINE MIR 13 203 -59 1631 165 77 9 chr13 29976294 29976634 -89768264 + MLT2C1 LTR ERVL 35 397 0 292 148 19 0 chr13 29977228 29977282 -89767616 - MER116 DNA Mariner -25 55 1 567 261 48 18 chr13 29977909 29978074 -89766824 + MIR SINE MIR 12 181 -81 369 345 35 30 chr13 29978413 29978613 -89766285 + L2 LINE L2 2552 2752 -562 7116 203 19 33 chr13 29978802 29980684 -89764214 + L1 LINE L1 2367 4222 -1924 710 150 0 0 chr13 29980784 29980904 -89763994 + AluSp/q SINE Alu 194 313 0 1039 193 0 0 chr13 29981030 29981196 -89763702 - AluJb SINE Alu -13 299 134 2060 84 66 0 chr13 29981196 29981469 -89763429 - AluSg SINE Alu -19 291 1 1431 171 56 45 chr13 29983104 29983461 -89761437 - MER47A DNA MER2_type -5 361 1 198 127 18 36 chr13 29984420 29984475 -89760423 + GA-rich Low_complexity Low_complexity 1 54 0 2246 105 0 0 chr13 29984477 29984773 -89760125 - AluSx SINE Alu -16 296 1 295 200 67 40 chr13 29985212 29985287 -89759611 - L2 LINE L2 -33 3280 3204 227 308 90 41 chr13 29985541 29985807 -89759091 + L2 LINE L2 2326 2604 -710 341 302 103 51 chr13 29985988 29986339 -89758559 + L2 LINE L2 2934 3302 -11 2022 116 3 0 chr13 29987629 29987935 -89756963 - AluSx SINE Alu 0 307 1 187 329 41 0 chr13 29988356 29988429 -89756469 + MIR3 SINE MIR 127 202 -6 258 56 0 0 chr13 29988537 29988573 -89756325 + (TA)n Simple_repeat Simple_repeat 1 36 0 276 265 0 0 chr13 29988581 29988664 -89756234 - L1MC4 LINE L1 -1346 6696 6614 203 182 0 0 chr13 29988715 29988748 -89756150 + (TATG)n Simple_repeat Simple_repeat 4 36 0 396 333 25 25 chr13 29989226 29989388 -89755510 - L2 LINE L2 -201 3071 2910 2494 109 43 0 chr13 29991587 29991934 -89752964 + THE1B LTR MaLR 3 364 0 5806 215 37 14 chr13 29992339 29994046 -89750852 - L1 LINE L1 -2395 5170 3420 212 319 69 0 chr13 29994055 29994127 -89750771 + L2 LINE L2 3188 3264 -8 560 127 55 109 chr13 29994506 29994671 -89750227 + LTR37A LTR ERV1 3 158 -268 5543 111 82 19 chr13 29994671 29994733 -89750165 + MER51B-int LTR ERV1 2122 2179 -5637 2261 119 3 6 chr13 29994733 29995045 -89749853 + AluSx SINE Alu 1 311 -1 5543 111 82 19 chr13 29995045 29996059 -89748839 + MER51B-int LTR ERV1 2179 3265 -4551 1914 172 63 35 chr13 29996071 29996559 -89748339 + MER51B-int LTR ERV1 1476 1977 -3240 1019 82 114 2 chr13 29996538 29996808 -89748090 + MER51B-int LTR ERV1 2210 4907 -1691 * 33 0 0 0 chr13 29996822 29996855 -89748043 + AT_rich Low_complexity Low_complexity 1 33 0 9250 134 35 16 chr13 29996876 29997116 -89747782 + MER51B-int LTR ERV1 5617 5851 -1965 1875 116 11 14 chr13 29997116 29997401 -89747497 - AluSx SINE Alu 0 312 29 9250 134 35 16 chr13 29997401 29998725 -89746173 + MER51B-int LTR ERV1 5851 7421 -395 216 0 0 0 chr13 29998725 29998749 -89746149 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 9250 134 35 16 chr13 29998749 29999152 -89745746 + MER51B-int LTR ERV1 7421 7815 -1 2152 99 129 0 chr13 29999155 29999488 -89745410 + MER51B LTR ERV1 2 377 0 461 317 36 20 chr13 29999488 29999823 -89745075 - L1 LINE L1 -5600 1886 1405 461 189 252 0 chr13 30000822 30000949 -89743949 + MER5A DNA MER1_type 26 184 -5 435 257 146 10 chr13 30002135 30002341 -89742557 + MIR SINE MIR 11 244 -18 259 241 66 72 chr13 30002390 30002556 -89742342 - LTR16A1 LTR ERVL 0 457 293 2301 79 3 25 chr13 30003296 30003612 -89741286 - AluSc SINE Alu 0 309 1 24 32 0 0 chr13 30004133 30004164 -89740734 + AT_rich Low_complexity Low_complexity 1 31 0 486 211 23 8 chr13 30004240 30004373 -89740525 - L1ME LINE L1 -382 5780 5646 295 272 37 69 chr13 30004486 30004732 -89740166 - L1M4 LINE L1 -3569 2577 2340 575 284 47 87 chr13 30006324 30006645 -89738253 - L2 LINE L2 0 3313 3006 2315 236 32 0 chr13 30006663 30007256 -89737642 + L1MB8 LINE L1 5379 5990 -188 2011 125 0 29 chr13 30008158 30008470 -89736428 - AluSx SINE Alu -9 303 1 2370 86 3 16 chr13 30008483 30008796 -89736102 - AluSg SINE Alu -1 309 1 400 264 42 77 chr13 30009616 30009912 -89734986 - L1ME LINE L1 -713 5453 5159 288 248 68 26 chr13 30009912 30010029 -89734869 - L1MD2 LINE L1 -30 6329 6208 1655 124 8 4 chr13 30010031 30010273 -89734625 + AluSx SINE Alu 1 243 -69 737 52 0 41 chr13 30010273 30010406 -89734492 + AluSp/q SINE Alu 190 318 0 310 236 0 0 chr13 30010432 30010504 -89734394 - L1MD3 LINE L1 -140 7855 7784 21 0 0 0 chr13 30011135 30011156 -89733742 + AT_rich Low_complexity Low_complexity 1 21 0 704 137 217 6 chr13 30011434 30011595 -89733303 + L1PA16 LINE L1 5963 6157 -9 1988 146 9 22 chr13 30012832 30013147 -89731751 + AluJb SINE Alu 1 311 -1 230 154 0 0 chr13 30013272 30013335 -89731563 + AluSx SINE Alu 246 308 0 24 91 0 0 chr13 30013764 30013830 -89731068 + AT_rich Low_complexity Low_complexity 1 66 0 1664 179 35 6 chr13 30014751 30015091 -89729807 + L1MD2 LINE L1 5647 5996 -363 625 143 86 29 chr13 30015093 30015302 -89729596 + Charlie2 DNA MER1_type 2271 2491 -371 8901 97 79 1 chr13 30015741 30017167 -89727731 - Charlie3 DNA MER1_type -1073 1637 3 1226 148 15 0 chr13 30017168 30017364 -89727534 + Tigger3(Golem) DNA MER2_type 2831 3029 0 234 0 0 0 chr13 30017367 30017393 -89727505 + (CA)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr13 30017600 30017621 -89727277 + (TA)n Simple_repeat Simple_repeat 1 21 0 7378 43 0 0 chr13 30017621 30019277 -89725621 - L1PA5 LINE L1 -7 6147 4490 238 188 139 20 chr13 30019277 30019378 -89725520 - L1MEc LINE L1 -4670 1726 1614 22 35 0 0 chr13 30019393 30019422 -89725476 + AT_rich Low_complexity Low_complexity 1 29 0 363 252 77 32 chr13 30019430 30019455 -89725443 - MIR SINE MIR -13 249 227 2322 168 31 17 chr13 30019455 30019877 -89725021 + MSTA LTR MaLR 1 428 0 363 252 77 32 chr13 30019877 30020006 -89724892 - MIR SINE MIR -35 227 88 844 233 47 0 chr13 30020737 30020909 -89723989 - MER5A DNA MER1_type -9 180 1 682 300 76 5 chr13 30022347 30022570 -89722328 + MIR SINE MIR 24 262 0 592 244 62 43 chr13 30022920 30023178 -89721720 + L1MDa LINE L1 1396 1658 -4882 471 291 12 6 chr13 30023251 30023416 -89721482 + L1ME2 LINE L1 5998 6163 -1 2256 116 0 3 chr13 30023825 30024136 -89720762 + AluSg SINE Alu 1 310 0 287 173 111 0 chr13 30025782 30025863 -89719035 - L1MB2 LINE L1 0 6171 6082 955 186 63 94 chr13 30027999 30028414 -89716484 + L1MC4 LINE L1 7498 7899 -143 445 211 9 0 chr13 30028495 30028609 -89716289 + L1MC4 LINE L1 7921 8035 -7 205 200 0 22 chr13 30028627 30028672 -89716226 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 425 274 43 100 chr13 30028753 30029065 -89715833 + L1M4 LINE L1 4990 5287 -859 374 256 45 75 chr13 30029123 30029256 -89715642 + L1M LINE L1 5293 5421 -700 633 272 52 49 chr13 30029484 30029789 -89715109 - LTR16C LTR ERVL 0 491 186 196 238 0 0 chr13 30029978 30030020 -89714878 + L2 LINE L2 3267 3308 -5 306 279 134 96 chr13 30030334 30030906 -89713992 - L2 LINE L2 -640 2674 2072 2307 99 6 6 chr13 30030906 30031218 -89713680 + AluSx SINE Alu 1 312 0 306 279 134 96 chr13 30031218 30031302 -89713596 - L2 LINE L2 -1242 2072 1993 1921 140 10 19 chr13 30031326 30031640 -89713258 + AluJb SINE Alu 1 311 -1 289 274 186 0 chr13 30031727 30031829 -89713069 + L2 LINE L2 3147 3267 -5 25 0 0 0 chr13 30032150 30032175 -89712723 + AT_rich Low_complexity Low_complexity 1 25 0 317 317 48 21 chr13 30033932 30034077 -89710821 - L2 LINE L2 -10 3303 3155 269 244 278 0 chr13 30034762 30034852 -89710046 - MER5A DNA MER1_type -2 187 73 750 184 0 43 chr13 30034863 30035026 -89709872 + L2 LINE L2 3158 3313 0 767 267 142 44 chr13 30035701 30035958 -89708940 - L1M4 LINE L1 -807 5339 5108 4750 148 42 6 chr13 30035958 30036829 -89708069 + MER4D LTR ERV1 1 903 0 767 267 142 44 chr13 30036829 30036889 -89708009 - L1M4 LINE L1 -1038 5108 5055 261 0 0 0 chr13 30036889 30036918 -89707980 + (CA)n Simple_repeat Simple_repeat 2 30 0 767 267 142 44 chr13 30036918 30037482 -89707416 - L1M4 LINE L1 -1091 5055 4371 251 252 185 17 chr13 30037803 30037922 -89706976 - MIR SINE MIR -108 154 16 226 315 14 0 chr13 30037949 30038022 -89706876 - tRNA-Glu-GAG tRNA tRNA 0 75 2 559 297 136 25 chr13 30038160 30038667 -89706231 + L2 LINE L2 2593 3153 -160 837 109 56 11 chr13 30038780 30039047 -89705851 - L1MB3 LINE L1 0 6183 5706 213 259 0 19 chr13 30039068 30039122 -89705776 + L2 LINE L2 3169 3221 -92 629 323 87 39 chr13 30039253 30039885 -89705013 + L2 LINE L2 2589 3242 -30 234 191 0 0 chr13 30040572 30040619 -89704279 + GA-rich Low_complexity Low_complexity 3 49 0 381 288 8 32 chr13 30040956 30041081 -89703817 - MER5A DNA MER1_type -43 146 25 347 256 113 77 chr13 30041085 30041359 -89703539 + L1ME4a LINE L1 5814 6097 -24 1687 186 25 0 chr13 30042173 30042458 -89702440 - AluJo SINE Alu -19 293 2 1738 298 89 66 chr13 30044958 30045215 -89699683 - L2 LINE L2 0 3313 3063 259 71 24 0 chr13 30045215 30045257 -89699641 - MADE1 DNA Mariner -37 43 1 1738 298 89 66 chr13 30045257 30046312 -89698586 - L2 LINE L2 -250 3063 1925 874 151 50 0 chr13 30047483 30047650 -89697248 - FRAM SINE Alu 0 174 1 324 346 46 8 chr13 30047844 30047974 -89696924 - MIR SINE MIR -118 144 10 373 285 56 28 chr13 30048068 30048212 -89696686 + MIR3 SINE MIR 50 197 -11 24 77 0 0 chr13 30048560 30048612 -89696286 + AT_rich Low_complexity Low_complexity 1 52 0 370 286 137 44 chr13 30050275 30050502 -89694396 - MIR SINE MIR -12 250 3 247 297 14 0 chr13 30050554 30050628 -89694270 - MER117 DNA MER1_type -4 193 119 1168 178 50 4 chr13 30052167 30052408 -89692490 + MLT1D LTR MaLR 254 505 0 2270 118 0 0 chr13 30052898 30053204 -89691694 + AluSx SINE Alu 1 306 -6 205 303 90 66 chr13 30053387 30053509 -89691389 + L2 LINE L2 3110 3234 -38 568 233 134 12 chr13 30053580 30053752 -89691146 + MIR SINE MIR 19 211 -51 695 304 32 12 chr13 30053818 30054076 -89690822 + MIR SINE MIR 2 262 0 1867 168 166 9 chr13 30055144 30055579 -89689319 + MLT1D LTR MaLR 1 503 -2 1852 101 0 41 chr13 30055718 30055985 -89688913 + AluSx SINE Alu 1 256 -56 1316 170 19 8 chr13 30056073 30056338 -89688560 + L1MA4 LINE L1 6029 6296 -4 387 308 96 58 chr13 30057359 30057567 -89687331 - MIR SINE MIR -1 261 46 219 269 60 0 chr13 30058596 30058663 -89686235 + L2 LINE L2 3243 3313 0 2257 103 10 0 chr13 30058962 30059253 -89685645 - AluSg SINE Alu -16 294 1 28 0 0 0 chr13 30059790 30059818 -89685080 + AT_rich Low_complexity Low_complexity 1 28 0 2408 82 0 0 chr13 30060503 30060808 -89684090 - AluY SINE Alu -6 305 1 256 294 118 0 chr13 30060993 30061095 -89683803 - MIR SINE MIR -65 143 30 243 0 0 0 chr13 30061852 30061879 -89683019 + (A)n Simple_repeat Simple_repeat 1 27 0 267 203 36 65 chr13 30062473 30062557 -89682341 + MER112 DNA MER1_type 66 146 -114 2133 118 0 14 chr13 30062557 30062853 -89682045 - AluSx SINE Alu -20 292 1 267 203 36 65 chr13 30062853 30062906 -89681992 + MER112 DNA MER1_type 146 199 -61 1800 125 40 68 chr13 30063053 30063333 -89681565 + MER2 DNA MER2_type 2 288 -56 2164 89 0 4 chr13 30063333 30063604 -89681294 + AluY SINE Alu 1 270 -41 180 0 0 0 chr13 30063604 30063624 -89681274 + (TA)n Simple_repeat Simple_repeat 2 21 0 1800 125 40 68 chr13 30063624 30063695 -89681203 + MER2 DNA MER2_type 286 344 0 2074 143 0 0 chr13 30063723 30064009 -89680889 + AluSx SINE Alu 1 286 -26 220 180 33 16 chr13 30065663 30065724 -89679174 + GA-rich Low_complexity Low_complexity 2 63 0 459 305 8 0 chr13 30066532 30066650 -89678248 + MIR SINE MIR 17 135 -127 239 288 72 65 chr13 30067654 30067807 -89677091 - L2 LINE L2 -1 3312 3159 541 292 36 18 chr13 30067813 30067981 -89676917 + MIR SINE MIR 75 245 -17 323 308 117 8 chr13 30068230 30068350 -89676548 + L2 LINE L2 3127 3259 -13 252 0 0 0 chr13 30068350 30068378 -89676520 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 189 278 42 0 chr13 30068697 30068769 -89676129 - L2 LINE L2 -883 2431 2357 964 286 53 26 chr13 30068817 30069383 -89675515 - L1ME4a LINE L1 -1 6120 5540 540 268 69 57 chr13 30069475 30069639 -89675259 - L1ME4a LINE L1 -749 5429 5268 2085 117 26 61 chr13 30069639 30069708 -89675190 - THE1B LTR MaLR 0 364 294 2158 88 17 7 chr13 30069708 30070003 -89674895 - AluSg SINE Alu -10 300 3 2085 117 26 61 chr13 30070003 30070310 -89674588 - THE1B LTR MaLR -70 294 1 540 268 69 57 chr13 30070310 30070605 -89674293 - L1ME4a LINE L1 -910 5268 4957 3877 141 22 6 chr13 30071599 30072271 -89672627 - L1MB3 LINE L1 -2 6181 5499 240 271 34 0 chr13 30072312 30072371 -89672527 - L2 LINE L2 -56 3216 3156 464 246 291 0 chr13 30072677 30072921 -89671977 + MER102a DNA MER1_type 1 315 -15 1029 201 66 3 chr13 30072936 30073042 -89671856 + MER33 DNA MER1_type 8 106 -2479 1793 141 57 37 chr13 30073042 30073340 -89671558 - AluSg SINE Alu -6 304 1 1029 201 66 3 chr13 30073340 30073521 -89671377 + MER33 DNA MER1_type 106 313 -11 25 0 0 0 chr13 30074637 30074662 -89670236 + AT_rich Low_complexity Low_complexity 1 25 0 2279 114 3 0 chr13 30075271 30075568 -89669330 + AluSq SINE Alu 1 298 -15 253 303 138 11 chr13 30076411 30076599 -89668299 + MIR SINE MIR 47 258 -4 252 0 0 0 chr13 30077574 30077602 -89667296 + (CA)n Simple_repeat Simple_repeat 2 29 0 25 31 0 0 chr13 30078995 30079027 -89665871 + AT_rich Low_complexity Low_complexity 1 32 0 183 167 0 0 chr13 30080935 30080977 -89663921 + (TCTG)n Simple_repeat Simple_repeat 3 44 0 2242 145 54 2 chr13 30082290 30082696 -89662202 + MSTB1 LTR MaLR 6 432 0 239 265 265 8 chr13 30083379 30083496 -89661402 + L2 LINE L2 3125 3271 -1 597 225 283 5 chr13 30083513 30083704 -89661194 - MIR SINE MIR 0 262 19 362 254 34 72 chr13 30084390 30084553 -89660345 + MER112 DNA MER1_type 28 183 -77 1984 151 7 0 chr13 30084553 30084851 -89660047 + AluSx SINE Alu 1 300 -12 362 254 34 72 chr13 30084851 30084896 -89660002 + MER112 DNA MER1_type 183 228 -32 609 14 0 0 chr13 30085733 30085803 -89659095 + (TC)n Simple_repeat Simple_repeat 1 70 0 25 31 0 0 chr13 30086640 30086672 -89658226 + AT_rich Low_complexity Low_complexity 1 32 0 333 0 0 0 chr13 30087462 30087499 -89657399 + (CA)n Simple_repeat Simple_repeat 2 38 0 2247 95 0 7 chr13 30088121 30088417 -89656481 + AluSg SINE Alu 16 309 -1 459 242 58 0 chr13 30088517 30088637 -89656261 - MIR SINE MIR -21 241 115 209 284 15 30 chr13 30088628 30088695 -89656203 - L2 LINE L2 -23 3249 3184 * 4831 48 0 3 chr13 30088985 30089606 -89655292 - L1PA6 LINE L1 -122 6032 5414 405 0 0 0 chr13 30090326 30090371 -89654527 + (CA)n Simple_repeat Simple_repeat 2 46 0 201 350 0 0 chr13 30092659 30092719 -89652179 + GA-rich Low_complexity Low_complexity 2 61 0 21 0 0 0 chr13 30093166 30093187 -89651711 + AT_rich Low_complexity Low_complexity 1 21 0 219 218 51 13 chr13 30094009 30094087 -89650811 + (TA)n Simple_repeat Simple_repeat 2 82 0 590 274 50 11 chr13 30096375 30096554 -89648344 + MIR SINE MIR 6 191 -71 2158 113 0 10 chr13 30096749 30097051 -89647847 - AluSx SINE Alu -13 299 1 262 229 16 0 chr13 30098411 30098472 -89646426 - L2 LINE L2 -8 3305 3244 297 0 0 0 chr13 30099794 30099827 -89645071 + (TG)n Simple_repeat Simple_repeat 2 34 0 964 102 15 0 chr13 30099827 30099964 -89644934 - AluY SINE Alu -3 308 170 2479 66 0 3 chr13 30099966 30100269 -89644629 - AluY SINE Alu -9 302 1 181 314 78 0 chr13 30100468 30100519 -89644379 - L2 LINE L2 -8 3264 3210 2220 179 36 21 chr13 30100600 30101130 -89643768 + MER74A LTR ERVL 8 545 -13 418 264 0 85 chr13 30102320 30102521 -89642377 - L2 LINE L2 0 3313 3130 2415 254 35 14 chr13 30102532 30103246 -89641652 + HsTC2c DNA MER2_type 1 729 0 183 80 0 0 chr13 30103834 30103859 -89641039 + (CA)n Simple_repeat Simple_repeat 2 26 0 540 286 99 19 chr13 30104685 30104898 -89640000 + MIR SINE MIR 21 250 -12 380 301 82 86 chr13 30105958 30106309 -89638589 + L1M2 LINE L1 805 1155 -5694 193 29 59 0 chr13 30106309 30106343 -89638555 + (CGCTG)n Simple_repeat Simple_repeat 3 38 0 380 301 82 86 chr13 30106343 30106529 -89638369 + L1M2 LINE L1 1155 1340 -5509 272 283 163 0 chr13 30106848 30106940 -89637958 - MIR3 SINE MIR -27 181 75 1038 156 69 0 chr13 30107068 30107286 -89637612 + L1MB7 LINE L1 5951 6183 -1 2215 99 3 0 chr13 30107292 30107586 -89637312 + AluSg SINE Alu 1 295 -15 643 135 0 0 chr13 30107600 30107696 -89637202 + AluJb SINE Alu 197 292 -20 204 323 77 0 chr13 30107852 30107917 -89636981 - L2 LINE L2 -65 3207 3138 235 363 20 20 chr13 30108295 30108397 -89636501 - MIR SINE MIR -85 123 22 8755 106 37 81 chr13 30108770 30109105 -89635793 + Tigger4(Zombi) DNA MER2_type 1 349 -2382 186 103 0 0 chr13 30109105 30109134 -89635764 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8755 106 37 81 chr13 30109134 30109659 -89635239 + Tigger4(Zombi) DNA MER2_type 349 895 -1836 860 97 0 0 chr13 30109659 30109772 -89635126 - AluSp/q SINE Alu -11 302 190 8755 106 37 81 chr13 30109772 30110462 -89634436 + Tigger4(Zombi) DNA MER2_type 895 1591 -1140 4964 97 13 49 chr13 30110482 30110666 -89634232 + Tigger4(Zombi) DNA MER2_type 1908 2097 -634 2244 104 0 3 chr13 30110666 30110965 -89633933 + AluSc SINE Alu 1 298 -11 4964 97 13 49 chr13 30110965 30111135 -89633763 + Tigger4(Zombi) DNA MER2_type 2097 2272 -459 2156 131 3 13 chr13 30111135 30111447 -89633451 - AluSx SINE Alu -3 309 1 4964 97 13 49 chr13 30111447 30111760 -89633138 + Tigger4(Zombi) DNA MER2_type 2272 2541 -190 2214 121 0 0 chr13 30111760 30112057 -89632841 + AluSx SINE Alu 1 297 -15 4964 97 13 49 chr13 30112057 30112242 -89632656 + Tigger4(Zombi) DNA MER2_type 2541 2731 0 195 133 0 0 chr13 30112333 30112363 -89632535 + L2 LINE L2 3277 3306 -7 22 0 0 0 chr13 30113641 30113663 -89631235 + AT_rich Low_complexity Low_complexity 1 22 0 184 318 83 55 chr13 30113747 30113964 -89630934 - L2 LINE L2 -221 3051 2829 989 194 133 5 chr13 30113967 30114178 -89630720 - MER8 DNA MER2_type -1 238 1 2319 106 0 0 chr13 30114706 30114999 -89629899 + AluSq SINE Alu 1 293 -20 282 354 62 22 chr13 30115158 30115336 -89629562 + L3 LINE CR1 103 287 -1290 652 283 78 27 chr13 30115426 30115865 -89629033 + MLT1J LTR MaLR 1 429 -21 342 336 62 0 chr13 30115891 30116019 -89628879 + L3 LINE CR1 433 568 -1009 715 159 0 0 chr13 30116172 30116285 -89628613 - AluSx SINE Alu -10 302 190 835 88 0 56 chr13 30116286 30116411 -89628487 - AluSx SINE Alu -195 118 1 2202 111 19 3 chr13 30116423 30116730 -89628168 - AluSx SINE Alu 0 312 1 362 250 21 43 chr13 30116826 30116966 -89627932 - MLT1J LTR MaLR -53 458 322 452 179 0 0 chr13 30117057 30117141 -89627757 - L1ME2 LINE L1 -36 6128 6045 248 343 116 7 chr13 30117199 30117338 -89627560 + L3 LINE CR1 691 848 -729 4320 10 6 0 chr13 30117338 30117829 -89627069 + L1PA2 LINE L1 5662 6155 0 1359 203 44 20 chr13 30117839 30118134 -89626764 + AluJo SINE Alu 1 302 -10 365 229 141 77 chr13 30118155 30118325 -89626573 - L1ME3A LINE L1 -31 6139 5959 2347 101 0 7 chr13 30118443 30118750 -89626148 - AluSc SINE Alu -4 305 1 717 235 62 96 chr13 30118750 30119345 -89625553 - L1MC5 LINE L1 -459 7502 6928 707 224 23 95 chr13 30119360 30119691 -89625207 - MER77 LTR ERV1 -7 598 375 869 190 0 6 chr13 30119706 30119869 -89625029 - MLT1A2 LTR MaLR -212 162 1 2286 82 0 3 chr13 30121028 30121353 -89623545 - AluY SINE Alu 0 324 1 2255 106 0 3 chr13 30121363 30121666 -89623232 - AluSq SINE Alu -11 302 1 1433 181 100 15 chr13 30122153 30122423 -89622475 + AluJo SINE Alu 1 293 -19 1850 150 0 31 chr13 30122425 30122747 -89622151 + AluSx SINE Alu 1 313 0 26 0 0 0 chr13 30122882 30122908 -89621990 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr13 30123100 30123129 -89621769 + AT_rich Low_complexity Low_complexity 1 29 0 2217 90 7 0 chr13 30123234 30123522 -89621376 - AluSg SINE Alu -20 290 1 24 0 0 0 chr13 30123525 30123549 -89621349 + AT_rich Low_complexity Low_complexity 1 24 0 2726 156 126 16 chr13 30126126 30126683 -89618215 - LTR26E LTR ERV1 -4 618 1 21 57 0 0 chr13 30126854 30126889 -89618009 + AT_rich Low_complexity Low_complexity 1 35 0 2507 72 0 0 chr13 30126920 30127225 -89617673 - AluY SINE Alu -6 305 1 338 295 42 76 chr13 30127624 30127823 -89617075 - MIR SINE MIR -40 222 32 673 226 35 48 chr13 30127894 30128124 -89616774 - LTR16A LTR ERVL -15 435 209 261 250 278 28 chr13 30128554 30128698 -89616200 - MER5A DNA MER1_type 0 189 10 534 240 135 21 chr13 30128770 30128962 -89615936 - MLT1C LTR MaLR -34 433 220 3148 94 32 2 chr13 30129105 30129574 -89615324 - MER41A LTR ERV1 0 554 72 338 206 0 0 chr13 30130354 30130417 -89614481 - L2 LINE L2 0 3313 3251 250 370 0 12 chr13 30130551 30130632 -89614266 + MIR3 SINE MIR 14 93 -115 1895 181 15 0 chr13 30131957 30132299 -89612599 + MER7A DNA MER2_type 2 346 0 997 134 13 0 chr13 30132532 30132681 -89612217 - AluSc SINE Alu -20 289 139 243 0 0 0 chr13 30132709 30132736 -89612162 + (TA)n Simple_repeat Simple_repeat 2 28 0 2380 97 0 3 chr13 30132736 30133044 -89611854 - AluSg SINE Alu -3 307 1 335 282 35 101 chr13 30133204 30133431 -89611467 - L1MC4 LINE L1 -9 8033 7822 471 291 12 6 chr13 30133453 30133618 -89611280 - L1ME2 LINE L1 -1 6163 5998 561 256 68 37 chr13 30133691 30134012 -89610886 - L1MDa LINE L1 -4882 1198 868 1116 252 128 43 chr13 30134015 30134475 -89610423 + MLT1D LTR MaLR 7 505 0 1123 199 16 29 chr13 30134475 30134791 -89610107 - L1MDa LINE L1 -5191 879 568 443 321 30 57 chr13 30134908 30135004 -89609894 - L1M4 LINE L1 -1306 5800 5703 2069 97 7 39 chr13 30135004 30135313 -89609585 - AluSx SINE Alu -5 307 9 443 321 30 57 chr13 30135313 30135478 -89609420 - L1M4 LINE L1 -1403 5703 5546 683 227 0 0 chr13 30135505 30135637 -89609261 - FLAM_C SINE Alu 0 133 2 302 198 74 58 chr13 30135637 30135751 -89609147 - L1M4 LINE L1 -1671 5435 5317 500 349 67 21 chr13 30135763 30136047 -89608851 - L1M4 LINE L1 -1822 5284 4988 360 257 71 0 chr13 30136110 30136250 -89608648 - L1MEd LINE L1 -5062 1057 908 688 167 21 7 chr13 30136252 30136396 -89608502 - L1MA9 LINE L1 0 6312 6167 3134 237 63 27 chr13 30136399 30139046 -89605852 - L1M4 LINE L1 -3534 3572 1 332 296 10 0 chr13 30139230 30139328 -89605570 - L1MEd LINE L1 -5364 755 657 218 294 15 0 chr13 30139531 30139599 -89605299 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 1884 167 3 13 chr13 30139635 30139947 -89604951 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr13 30140131 30140153 -89604745 + AT_rich Low_complexity Low_complexity 1 22 0 482 249 59 63 chr13 30140235 30140472 -89604426 + L2 LINE L2 3078 3313 0 2294 174 30 16 chr13 30141311 30141737 -89603161 - MSTB1 LTR MaLR 0 432 1 7452 210 33 16 chr13 30141737 30143360 -89601538 - MSTB1-int LTR MaLR 0 1651 1 2131 178 45 21 chr13 30143360 30143782 -89601116 - MSTB1 LTR MaLR 0 432 1 180 111 0 0 chr13 30143875 30143902 -89600996 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 469 221 28 142 chr13 30144451 30144623 -89600275 + Charlie7 DNA MER1_type 1937 2127 -485 2319 101 0 3 chr13 30144623 30144921 -89599977 - AluSq SINE Alu -16 297 1 1730 159 3 10 chr13 30144928 30145217 -89599681 - AluJb SINE Alu -25 287 1 469 221 28 142 chr13 30145217 30145289 -89599609 + Charlie7 DNA MER1_type 2133 2160 -452 219 370 58 22 chr13 30145355 30145633 -89599265 - L2 LINE L2 -1109 2205 1918 289 94 19 19 chr13 30145655 30145708 -89599190 - MST-int LTR MaLR -265 1386 1334 383 311 67 21 chr13 30145719 30146002 -89598896 - L2 LINE L2 -1440 1874 1579 269 348 109 0 chr13 30146615 30146707 -89598191 - MIR SINE MIR -69 139 38 2495 76 0 0 chr13 30147297 30147601 -89597297 + AluY SINE Alu 1 304 -7 346 290 0 35 chr13 30152019 30152188 -89592710 + T-rich Low_complexity Low_complexity 2 164 0 256 158 0 0 chr13 30152450 30152488 -89592410 - 5S rRNA rRNA -83 38 1 2197 91 0 7 chr13 30152511 30152797 -89592101 - AluY SINE Alu 0 311 28 525 165 18 9 chr13 30153219 30153328 -89591570 + MLT1B LTR MaLR 205 314 -76 233 346 176 0 chr13 30153379 30153515 -89591383 - MIR3 SINE MIR -11 197 38 2099 116 0 11 chr13 30153598 30153882 -89591016 + AluSx SINE Alu 1 281 -31 180 365 58 0 chr13 30154904 30155008 -89589890 - L2 LINE L2 -7 3265 3156 241 339 66 25 chr13 30155289 30155410 -89589488 - MER5B DNA MER1_type -2 176 51 1985 132 55 17 chr13 30155976 30156324 -89588574 - MER46B DNA MER2_type 0 236 1 40 37 0 0 chr13 30156672 30156726 -89588172 + AT_rich Low_complexity Low_complexity 1 54 0 2427 26 0 0 chr13 30156802 30157074 -89587824 + AluY SINE Alu 39 310 -1 21 57 0 0 chr13 30157165 30157200 -89587698 + AT_rich Low_complexity Low_complexity 1 35 0 2138 125 0 0 chr13 30157663 30157959 -89586939 + AluSx SINE Alu 1 296 -16 430 191 40 32 chr13 30157970 30158096 -89586802 + L1MC3 LINE L1 7651 7777 -8 186 71 0 0 chr13 30158196 30158224 -89586674 + (TG)n Simple_repeat Simple_repeat 1 28 0 386 336 77 65 chr13 30158280 30158697 -89586201 + L2 LINE L2 2851 3272 0 401 0 20 0 chr13 30158703 30158752 -89586146 + (TG)n Simple_repeat Simple_repeat 2 51 0 224 200 60 0 chr13 30161477 30161527 -89583371 - MIR SINE MIR -114 148 96 783 290 131 11 chr13 30162140 30162582 -89582316 + L2 LINE L2 2811 3305 -8 26 30 0 0 chr13 30164513 30164546 -89580352 + AT_rich Low_complexity Low_complexity 1 33 0 234 310 28 0 chr13 30165069 30165140 -89579758 + L2 LINE L2 3197 3269 -3 2126 137 0 3 chr13 30165172 30165485 -89579413 + AluSx SINE Alu 1 312 0 24 53 0 0 chr13 30165652 30165690 -89579208 + AT_rich Low_complexity Low_complexity 1 38 0 430 349 57 6 chr13 30167871 30168046 -89576852 + MER5A DNA MER1_type 1 184 -5 2077 116 0 42 chr13 30168986 30169319 -89575579 + AluSq SINE Alu 1 313 0 226 322 17 0 chr13 30169462 30169521 -89575377 + L2 LINE L2 3203 3262 -10 406 330 153 5 chr13 30171719 30171934 -89572964 - MIR SINE MIR -6 256 10 217 301 163 39 chr13 30171950 30172103 -89572795 - MIR SINE MIR -71 191 20 683 227 53 0 chr13 30172161 30172311 -89572587 + MER5A DNA MER1_type 32 189 0 22 35 0 0 chr13 30173241 30173270 -89571628 + AT_rich Low_complexity Low_complexity 1 29 0 333 333 81 16 chr13 30173604 30173727 -89571171 - L2 LINE L2 -3 3269 3139 1918 107 0 0 chr13 30173733 30173986 -89570912 + AluSx SINE Alu 47 299 -13 314 285 90 35 chr13 30176408 30176552 -89568346 - MIR SINE MIR -17 245 94 1802 176 6 16 chr13 30176554 30176867 -89568031 + AluJb SINE Alu 1 310 -2 1032 52 29 29 chr13 30176901 30177075 -89567823 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 858 159 0 25 chr13 30177387 30177544 -89567354 + MER20 DNA MER1_type 1 153 -66 287 173 111 0 chr13 30179565 30179646 -89565252 + L1MB2 LINE L1 6082 6171 0 1386 192 39 42 chr13 30181266 30181291 -89563607 - MER1B DNA MER1_type -2405 307 283 1873 163 13 16 chr13 30181291 30181604 -89563294 - AluSx SINE Alu 0 312 1 1386 192 39 42 chr13 30181604 30181886 -89563012 - MER1B DNA MER1_type -2429 283 1 1015 355 178 11 chr13 30182755 30183810 -89561088 + L3 LINE CR1 122 1352 -225 460 254 107 54 chr13 30183859 30184083 -89560815 + L2 LINE L2 3078 3313 0 284 290 91 53 chr13 30184504 30184675 -89560223 + MIR SINE MIR 9 188 -67 451 363 25 6 chr13 30185347 30185504 -89559394 + MIR3 SINE MIR 17 176 -32 182 271 42 0 chr13 30187124 30187172 -89557726 + L3b LINE CR1 1423 1472 -111 414 0 0 0 chr13 30188823 30188869 -89556029 + (TG)n Simple_repeat Simple_repeat 1 46 0 23 68 0 0 chr13 30188999 30189043 -89555855 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 30189090 30189111 -89555787 + AT_rich Low_complexity Low_complexity 1 21 0 794 226 14 42 chr13 30189570 30189727 -89555171 - MER20 DNA MER1_type -8 211 60 2005 158 0 7 chr13 30189727 30190031 -89554867 + AluJb SINE Alu 1 302 -10 794 226 14 42 chr13 30190031 30190090 -89554808 - MER20 DNA MER1_type -159 60 1 180 77 0 0 chr13 30190458 30190484 -89554414 + (CATATA)n Simple_repeat Simple_repeat 3 28 0 21 36 0 0 chr13 30191616 30191644 -89553254 + AT_rich Low_complexity Low_complexity 1 28 0 1751 185 3 0 chr13 30191861 30192159 -89552739 + AluJo SINE Alu 3 301 -11 180 265 68 77 chr13 30192483 30192600 -89552298 - MIR SINE MIR -71 191 76 199 292 250 0 chr13 30192614 30192710 -89552188 - L2 LINE L2 -16 3256 3137 2222 88 0 7 chr13 30192722 30193039 -89551859 + AluSq SINE Alu 1 315 0 303 331 27 20 chr13 30193141 30193289 -89551609 - L2 LINE L2 -207 3065 2917 640 258 185 53 chr13 30193484 30193666 -89551232 + L2 LINE L2 2791 2948 -365 639 0 0 0 chr13 30193666 30193737 -89551161 + (TTTC)n Simple_repeat Simple_repeat 4 74 0 640 258 185 53 chr13 30193737 30194021 -89550877 + L2 LINE L2 2948 3313 0 2182 92 3 33 chr13 30194052 30194357 -89550541 - AluSq SINE Alu -17 296 1 30 27 0 0 chr13 30194458 30194495 -89550403 + AT_rich Low_complexity Low_complexity 1 37 0 192 301 24 36 chr13 30194894 30194977 -89549921 - MIR SINE MIR -48 214 133 2168 108 24 0 chr13 30195006 30195301 -89549597 - AluSg SINE Alu -8 302 1 208 320 100 61 chr13 30195638 30195869 -89549029 - MIR SINE MIR -17 245 6 2077 132 10 0 chr13 30196196 30196491 -89548407 + AluSx SINE Alu 3 300 -12 183 203 0 0 chr13 30197646 30197710 -89547188 + (CA)n Simple_repeat Simple_repeat 2 65 0 326 262 105 17 chr13 30197720 30197892 -89547006 + MER112 DNA MER1_type 60 246 -14 759 276 27 0 chr13 30197931 30198116 -89546782 + MIR SINE MIR 47 236 -26 2206 121 0 0 chr13 30198566 30198864 -89546034 - AluSx SINE Alu -14 298 1 199 196 54 54 chr13 30200195 30200251 -89544647 - L2 LINE L2 0 3272 3217 2131 124 0 7 chr13 30201814 30202105 -89542793 - AluSq SINE Alu -24 289 1 395 310 84 53 chr13 30202211 30202534 -89542364 + L2 LINE L2 1753 2085 -1229 1329 276 131 13 chr13 30203080 30203873 -89541025 + L1ME3A LINE L1 3964 4850 -1296 1503 277 44 36 chr13 30203908 30204105 -89540793 + L1ME3A LINE L1 4987 5181 -989 1945 114 3 55 chr13 30204105 30204412 -89540486 - AluSc SINE Alu -18 291 1 1503 277 44 36 chr13 30204412 30205057 -89539841 + L1ME3A LINE L1 5181 5833 -337 302 104 0 0 chr13 30205369 30205417 -89539481 - MADE1 DNA Mariner 0 80 33 361 276 64 32 chr13 30206868 30207024 -89537874 + MER5A DNA MER1_type 1 161 -28 256 354 26 9 chr13 30207056 30207169 -89537729 - MIR3 SINE MIR -85 123 9 2216 119 0 3 chr13 30207931 30208226 -89536672 - AluSx SINE Alu -18 294 1 687 260 130 21 chr13 30208609 30208894 -89536004 - MER46C DNA MER2_type -21 317 2 2030 122 24 7 chr13 30209626 30209920 -89534978 - AluSx SINE Alu -13 299 1 21 0 0 0 chr13 30211545 30211566 -89533332 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 30212325 30212346 -89532552 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 30212400 30212438 -89532460 + AT_rich Low_complexity Low_complexity 1 38 0 1481 183 74 18 chr13 30216427 30216711 -89528187 - AluJo SINE Alu -10 302 3 237 254 0 16 chr13 30216846 30216909 -89527989 + L1MEd LINE L1 3 64 -6055 852 296 95 24 chr13 30217171 30218067 -89526831 + L1MEd LINE L1 578 1620 -870 649 111 0 0 chr13 30218317 30218407 -89526491 + AluSq SINE Alu 151 240 -73 301 321 0 9 chr13 30218550 30218656 -89526242 + MLT1I LTR MaLR 61 165 -244 2223 51 0 48 chr13 30218656 30218951 -89525947 - AluY SINE Alu -16 295 15 231 348 163 21 chr13 30220659 30221217 -89523681 - L2 LINE L2 -430 2884 2248 279 203 0 0 chr13 30221999 30222058 -89522840 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 25 51 0 0 chr13 30222195 30222234 -89522664 + AT_rich Low_complexity Low_complexity 1 39 0 1623 142 83 10 chr13 30222489 30222595 -89522303 + AluSg SINE Alu 1 98 -212 549 0 0 0 chr13 30222595 30222656 -89522242 + (CA)n Simple_repeat Simple_repeat 2 62 0 1623 142 83 10 chr13 30222656 30222838 -89522060 + AluSg SINE Alu 98 310 0 3781 209 53 48 chr13 30223794 30224441 -89520457 - L1M4 LINE L1 -1118 5264 4607 1523 163 48 0 chr13 30224441 30224693 -89520205 + AluJo SINE Alu 27 290 -22 3781 209 53 48 chr13 30224693 30225182 -89519716 - L1M4 LINE L1 -1775 4607 4122 342 253 61 78 chr13 30225303 30225548 -89519350 - L1M4 LINE L1 -4837 1547 1307 310 294 0 0 chr13 30225894 30225986 -89518912 + L1M4 LINE L1 4936 5027 -1119 606 228 73 0 chr13 30225990 30226112 -89518786 + MER2 DNA MER2_type 1 131 -214 799 203 26 0 chr13 30226112 30226265 -89518633 - Tigger3(Golem) DNA MER2_type -1 3028 2872 542 204 0 76 chr13 30226245 30226377 -89518521 - MLT1E LTR MaLR -471 122 1 * 238 290 110 35 chr13 30226821 30226966 -89517932 - MLT1J LTR MaLR 0 511 356 2034 151 0 0 chr13 30227132 30227430 -89517468 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 30227436 30227457 -89517441 + AT_rich Low_complexity Low_complexity 1 21 0 6928 55 5 3 chr13 30228098 30228984 -89515914 - L1PA8 LINE L1 -2 6170 5284 2270 72 0 10 chr13 30229504 30229809 -89515089 + L1PA5 LINE L1 5852 6153 -1 2539 134 60 0 chr13 30231912 30232314 -89512584 - MSTB LTR MaLR 0 426 1 390 183 0 0 chr13 30233356 30233427 -89511471 + MLT2B3 LTR ERVL 1 71 -483 2130 196 69 37 chr13 30233525 30233989 -89510909 + MLT2B3 LTR ERVL 76 554 0 2342 268 3 10 chr13 30233989 30234608 -89510290 + HERVL-B3 LTR ERVL 1 615 -5039 38 22 0 0 chr13 30234727 30234772 -89510126 + AT_rich Low_complexity Low_complexity 1 45 0 1165 210 69 81 chr13 30235126 30235621 -89509277 - MER39 LTR ERV1 -4 703 1 9860 152 17 10 chr13 30235808 30237438 -89507460 + MER41C-int LTR ERV1 6117 7756 0 2835 167 16 50 chr13 30237438 30238012 -89506886 + MER41C LTR ERV1 1 554 0 1994 155 124 5 chr13 30238014 30238401 -89506497 - MER4D LTR ERV1 -215 688 264 222 37 0 0 chr13 30238447 30238474 -89506424 + (TG)n Simple_repeat Simple_repeat 1 27 0 357 289 141 13 chr13 30238622 30238778 -89506120 + MIR SINE MIR 2 177 -85 476 255 123 13 chr13 30239440 30239675 -89505223 + L1ME4a LINE L1 5346 5606 -515 835 29 10 0 chr13 30239685 30239788 -89505110 + L1PA7 LINE L1 4214 4317 -1829 6948 58 2 1 chr13 30239788 30240665 -89504233 + L1PA7 LINE L1 5265 6151 -3 684 249 29 0 chr13 30240703 30240908 -89503990 + L1ME4a LINE L1 5633 5843 -278 274 305 198 16 chr13 30241225 30241412 -89503486 - L2 LINE L2 -243 3029 2809 258 173 0 39 chr13 30241564 30241616 -89503282 + L2 LINE L2 3223 3272 0 2020 186 72 62 chr13 30241744 30242256 -89502642 + L1MCa LINE L1 9 525 -5901 663 113 81 24 chr13 30242235 30242359 -89502539 + L1MCa LINE L1 1540 1670 -4756 * 273 164 16 49 chr13 30242862 30242923 -89501975 - MLT1J LTR MaLR -221 290 232 322 154 308 0 chr13 30243216 30243320 -89501578 + L1MA9 LINE L1 6177 6312 0 220 336 26 9 chr13 30243387 30243500 -89501398 - L2 LINE L2 -1397 1917 1803 201 269 65 65 chr13 30243668 30243761 -89501137 - L2 LINE L2 -1525 1789 1697 3741 126 48 3 chr13 30243779 30244384 -89500514 - L1PB4 LINE L1 -3 6153 5522 858 203 122 40 chr13 30244467 30244827 -89500071 + MSTC LTR MaLR 3 425 -3 21 0 0 0 chr13 30245498 30245519 -89499379 + AT_rich Low_complexity Low_complexity 1 21 0 438 246 11 109 chr13 30245605 30245788 -89499110 - MIR SINE MIR -3 259 95 899 296 136 34 chr13 30245903 30246118 -89498780 - L3 LINE CR1 -404 1173 981 590 73 0 0 chr13 30246118 30246200 -89498698 - L1PA8 LINE L1 -14 6158 6077 899 296 136 34 chr13 30246200 30246603 -89498295 - L3 LINE CR1 -596 981 492 188 275 100 38 chr13 30246773 30246853 -89498045 - L2 LINE L2 -1847 1467 1383 651 323 183 19 chr13 30246866 30247560 -89497338 - L2 LINE L2 -2035 1279 472 195 42 0 0 chr13 30247634 30247658 -89497240 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 255 264 56 14 chr13 30248450 30248522 -89496376 - L2 LINE L2 -5 3308 3234 666 291 54 9 chr13 30248575 30248798 -89496100 - MIR SINE MIR -26 236 4 237 313 8 53 chr13 30248798 30248920 -89495978 + MIR SINE MIR 106 221 -41 371 261 212 6 chr13 30248971 30249136 -89495762 - MIR SINE MIR -62 200 2 329 358 17 6 chr13 30249508 30249684 -89495214 - L3 LINE CR1 -111 1466 1289 480 256 56 42 chr13 30250268 30250466 -89494432 - MIR3 SINE MIR -33 175 20 399 311 149 45 chr13 30251812 30252371 -89492527 - L2 LINE L2 0 3272 2640 1135 230 122 34 chr13 30252371 30252788 -89492110 + MSTB2 LTR MaLR 1 454 -3 399 311 149 45 chr13 30252788 30252855 -89492043 - L2 LINE L2 -632 2640 2581 216 0 0 0 chr13 30253519 30253543 -89491355 + (A)n Simple_repeat Simple_repeat 1 24 0 219 356 94 19 chr13 30254865 30255025 -89489873 - MIR SINE MIR -57 205 34 1146 168 94 10 chr13 30255110 30255408 -89489490 + MER33 DNA MER1_type 1 323 -1 786 213 29 33 chr13 30256875 30257148 -89487750 - L1M1 LINE L1 -3953 3612 3341 1319 148 12 121 chr13 30257149 30257487 -89487411 + AluSx SINE Alu 2 302 0 2053 279 49 3 chr13 30257509 30258141 -89486757 - L1M1 LINE L1 -4739 2757 2097 426 210 30 0 chr13 30258403 30258503 -89486395 - L1MC3 LINE L1 -315 7470 7368 451 327 68 15 chr13 30258530 30258796 -89486102 + L1M3f LINE L1 16 295 -5033 * 564 60 13 1 chr13 30258789 30258876 -89486022 + L1M2 LINE L1 5701 5787 -504 516 17 0 0 chr13 30258876 30258936 -89485962 + L1P2 LINE L1 5742 5801 -353 * 2409 59 9 0 chr13 30258919 30259266 -89485632 + L1PA7 LINE L1 5644 6152 -2 296 292 46 0 chr13 30259268 30259398 -89485500 - L1M4 LINE L1 -869 6696 6561 235 287 10 10 chr13 30259403 30259504 -89485394 - L1M4 LINE L1 -4124 3441 3341 577 139 0 0 chr13 30259504 30259583 -89485315 + AluS SINE Alu 1 79 -234 396 160 53 75 chr13 30259588 30259682 -89485216 - L1M4 LINE L1 -4655 2841 2750 3282 67 0 0 chr13 30259682 30260102 -89484796 + L1PA7 LINE L1 5729 6148 -6 317 100 0 0 chr13 30260102 30260152 -89484746 + L1M2 LINE L1 5777 5826 -471 * 468 193 26 0 chr13 30260150 30260264 -89484634 + L1MC3 LINE L1 7465 7581 -204 * 1998 66 3 0 chr13 30260257 30260544 -89484354 - L1P LINE L1 -917 5544 5257 * 18303 125 12 63 chr13 30260543 30262680 -89482218 - L1P3 LINE L1 -2181 4280 2383 2267 101 0 0 chr13 30262680 30262976 -89481922 + AluY SINE Alu 1 296 -15 18303 125 12 63 chr13 30262976 30265216 -89479682 - L1P3 LINE L1 -4078 2383 32 1593 161 25 0 chr13 30265216 30265502 -89479396 + MER2 DNA MER2_type 53 345 0 1009 215 12 4 chr13 30265529 30265780 -89479118 - L1M4 LINE L1 -1898 4248 3996 1546 199 104 12 chr13 30266340 30266763 -89478135 + MLT1C LTR MaLR 6 467 0 2787 10 0 0 chr13 30267193 30267498 -89477400 - AluYa5 SINE Alu -6 305 1 288 387 29 7 chr13 30267653 30267790 -89477108 + MIR SINE MIR 3 142 -66 198 0 0 0 chr13 30267929 30267951 -89476947 + (TA)n Simple_repeat Simple_repeat 1 22 0 373 289 74 110 chr13 30268619 30269010 -89475888 + LTR67 LTR ERVL 2 378 -179 514 306 0 6 chr13 30269196 30269356 -89475542 + ERVL LTR ERVL 4049 4207 -1557 755 306 69 34 chr13 30269372 30269780 -89475118 + ERVL LTR ERVL 4913 5334 -430 2023 109 0 18 chr13 30271114 30271424 -89473474 + AluSg SINE Alu 1 305 0 210 305 221 0 chr13 30271718 30271813 -89473085 + MIR SINE MIR 22 137 -71 256 237 18 26 chr13 30272758 30272872 -89472026 - L1MC/D LINE L1 -1904 5904 5792 336 323 126 12 chr13 30273548 30273715 -89471183 + MIR SINE MIR 21 206 -56 4336 51 0 0 chr13 30273720 30274253 -89470645 + L1PA5 LINE L1 5622 6154 0 263 208 42 0 chr13 30274390 30274438 -89470460 + MIR SINE MIR 95 144 -64 6763 72 2 1 chr13 30274753 30276337 -89468561 - L1PA7 LINE L1 -11 6143 4558 2615 22 38 0 chr13 30278056 30278369 -89466529 - L1PA4 LINE L1 -3 6152 5828 641 132 0 0 chr13 30278569 30278675 -89466223 - L1MA4 LINE L1 -6 6294 6189 300 167 0 0 chr13 30278732 30278792 -89466106 - L1MB5 LINE L1 0 6174 6115 2315 179 7 11 chr13 30278888 30279425 -89465473 - L1MB5 LINE L1 -55 6119 5518 8328 179 109 30 chr13 30279434 30280939 -89463959 + L1MB3 LINE L1 230 1982 -4400 1808 138 21 10 chr13 30280939 30281258 -89463640 + AluSx SINE Alu 1 312 0 8328 179 109 30 chr13 30281258 30282033 -89462865 + L1MB3 LINE L1 1982 2694 -3688 2011 168 5 36 chr13 30282034 30282311 -89462587 + LTR44 LTR ERV1 1 262 -257 2401 67 0 19 chr13 30282311 30282623 -89462275 - AluY SINE Alu -5 306 1 2011 168 5 36 chr13 30282623 30282763 -89462135 + LTR44 LTR ERV1 262 405 -114 1318 145 21 34 chr13 30282765 30282785 -89462113 + L1MA8 LINE L1 5022 5041 -1139 1900 128 39 3 chr13 30282785 30283120 -89461778 + L1MA8 LINE L1 5940 6286 -5 1318 145 21 34 chr13 30283120 30283292 -89461606 + L1MA8 LINE L1 5041 5214 -966 2025 116 46 17 chr13 30283292 30283594 -89461304 + AluSx SINE Alu 1 311 -1 1318 145 21 34 chr13 30283594 30283854 -89461044 + L1MA8 LINE L1 5214 5464 -716 388 184 61 0 chr13 30283853 30283951 -89460947 + L1MB3 LINE L1 4644 4747 -1635 * 3488 168 33 7 chr13 30283953 30284651 -89460247 + L1MB3 LINE L1 5703 6418 -1 1926 211 12 5 chr13 30284660 30285236 -89459662 - L1M3 LINE L1 -709 5471 4891 643 233 52 13 chr13 30285238 30285470 -89459428 - MER20B DNA MER1_type -44 739 499 525 264 127 55 chr13 30285496 30285788 -89459110 - MER20B DNA MER1_type -354 429 117 967 190 12 40 chr13 30285879 30286074 -89458824 - L1MC4a LINE L1 -525 7283 7095 2420 69 3 31 chr13 30286074 30286393 -89458505 - AluSp SINE Alu -3 310 1 967 190 12 40 chr13 30286393 30286450 -89458448 - L1MC4a LINE L1 -713 7095 7038 1247 84 21 21 chr13 30286554 30286813 -89458085 + AluY SINE Alu 93 351 0 2282 93 0 3 chr13 30286820 30287130 -89457768 + AluY SINE Alu 1 309 -2 2131 231 44 26 chr13 30287136 30287606 -89457292 - L1MC4a LINE L1 -776 7032 6547 258 32 0 0 chr13 30287606 30287637 -89457261 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 2131 231 44 26 chr13 30287637 30287781 -89457117 - L1MC4a LINE L1 -1261 6547 6407 2381 122 67 10 chr13 30287781 30288184 -89456714 + MSTB LTR MaLR 1 426 0 210 300 75 12 chr13 30288272 30288352 -89456546 - MIR SINE MIR -96 166 82 543 291 101 20 chr13 30289134 30289430 -89455468 + Charlie2 DNA MER1_type 1 320 -2542 573 167 15 38 chr13 30289440 30289572 -89455326 + Charlie2 DNA MER1_type 1856 1984 -878 985 211 115 40 chr13 30289680 30290149 -89454749 + Charlie2 DNA MER1_type 1978 2481 -381 11338 197 20 29 chr13 30290149 30290312 -89454586 + L1PA16 LINE L1 2733 2896 -3973 1969 97 31 0 chr13 30290312 30290570 -89454328 + AluSx SINE Alu 36 301 -11 11338 197 20 29 chr13 30290570 30292210 -89452688 + L1PA16 LINE L1 2896 4550 -2319 2081 153 0 0 chr13 30292210 30292510 -89452388 + AluSx SINE Alu 1 300 -12 11338 197 20 29 chr13 30292510 30294879 -89450019 + L1PA16 LINE L1 4550 6866 -3 649 221 84 42 chr13 30294883 30295218 -89449680 + Charlie2 DNA MER1_type 2476 2824 -38 772 274 36 36 chr13 30295403 30295732 -89449166 - MER110 LTR ERV1 -12 479 151 2643 61 0 0 chr13 30295779 30296089 -89448809 - AluSg SINE Alu 0 310 1 337 263 0 0 chr13 30296089 30296165 -89448733 - MER5A DNA MER1_type -113 76 1 1882 44 0 18 chr13 30296785 30297013 -89447885 + AluY SINE Alu 88 311 0 572 200 75 0 chr13 30297019 30297139 -89447759 + MER5A DNA MER1_type 61 189 0 708 322 22 0 chr13 30297777 30298004 -89446894 - MIR SINE MIR -28 234 3 376 224 48 34 chr13 30298106 30298253 -89446645 + MER53 DNA DNA 1 149 -40 1897 152 10 3 chr13 30298634 30298936 -89445962 - AluSx SINE Alu -8 304 1 314 303 159 3 chr13 30299187 30299385 -89445513 + MLT1J1 LTR MaLR 105 325 -125 2146 98 10 19 chr13 30299716 30300023 -89444875 + AluSx SINE Alu 1 304 -8 186 381 129 14 chr13 30300860 30301070 -89443828 + L2 LINE L2 2606 2839 -475 233 169 17 0 chr13 30301417 30301476 -89443422 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 234 292 42 25 chr13 30301579 30301699 -89443199 - LTR16C LTR ERVL 0 491 370 287 263 102 54 chr13 30302177 30302363 -89442535 - L1MC/D LINE L1 -2022 5855 5661 232 226 0 130 chr13 30302389 30302458 -89442440 - L1MC/D LINE L1 -5013 1383 1307 2088 120 17 10 chr13 30302458 30302759 -89442139 - AluSx SINE Alu -9 303 1 232 226 0 130 chr13 30302759 30302804 -89442094 - L1MC/D LINE L1 -5089 1307 1289 1940 122 4 7 chr13 30302804 30303074 -89441824 + AluSx SINE Alu 1 269 -43 232 226 0 130 chr13 30303074 30303104 -89441794 - L1MC/D LINE L1 -5107 1289 1257 296 27 0 0 chr13 30304103 30304140 -89440758 - PABL_A-int LTR ERV1 -3312 1703 1667 444 118 0 0 chr13 30304228 30304296 -89440602 + (TA)n Simple_repeat Simple_repeat 1 68 0 279 0 0 0 chr13 30304824 30304855 -89440043 + (TA)n Simple_repeat Simple_repeat 1 31 0 499 262 55 18 chr13 30305112 30305276 -89439622 - L2 LINE L2 -4 3309 3140 597 288 41 0 chr13 30305351 30305570 -89439328 - LTR16A LTR ERVL -166 284 57 894 312 60 10 chr13 30305593 30306070 -89438828 - L2 LINE L2 -159 3154 2644 398 204 9 80 chr13 30306246 30306359 -89438539 - MIR SINE MIR -106 156 52 5561 229 60 65 chr13 30306474 30308923 -89435975 - L1M4b LINE L1 -1689 5268 2884 3819 91 0 6 chr13 30308923 30309437 -89435461 - MER9 LTR ERVK 0 511 1 5561 229 60 65 chr13 30309437 30309697 -89435201 - L1M4b LINE L1 -4073 2884 2624 246 235 0 0 chr13 30309814 30309882 -89435016 - L1M4b LINE L1 -4598 2540 2473 640 121 0 0 chr13 30310020 30310119 -89434779 + L1PA8 LINE L1 6074 6172 0 925 268 57 16 chr13 30310155 30310521 -89434377 - L1M4b LINE L1 -4551 2408 2028 752 118 59 0 chr13 30310545 30310680 -89434218 - L1MA9 LINE L1 -2 6310 6168 2224 149 47 5 chr13 30310680 30311082 -89433816 - MSTB LTR MaLR 0 426 8 1980 144 39 23 chr13 30311094 30311482 -89433416 - L1MA9 LINE L1 -139 6173 5780 246 217 17 33 chr13 30311484 30311604 -89433294 + (CATATA)n Simple_repeat Simple_repeat 5 122 0 2734 150 16 23 chr13 30311638 30311937 -89432961 - L1MA9 LINE L1 -512 5779 5479 2835 19 0 0 chr13 30311937 30312248 -89432650 - AluYa5 SINE Alu 0 311 1 2734 150 16 23 chr13 30312248 30312634 -89432264 - L1MA9 LINE L1 -812 5479 5098 5598 207 48 74 chr13 30312699 30314416 -89430482 - L1M4b LINE L1 -4973 1882 182 38009 75 8 3 chr13 30314641 30320746 -89424152 + L1PA5 LINE L1 5 6145 -9 25 65 0 0 chr13 30320747 30320793 -89424105 + AT_rich Low_complexity Low_complexity 1 46 0 498 267 35 6 chr13 30320793 30320907 -89423991 - L1M4b LINE L1 -6682 177 55 198 0 0 0 chr13 30320907 30320929 -89423969 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 498 267 35 6 chr13 30320929 30320986 -89423912 - L1M4b LINE L1 -6804 55 1 2862 151 149 17 chr13 30321687 30322013 -89422885 - LTR8A LTR ERV1 0 727 446 210 37 0 0 chr13 30322013 30322040 -89422858 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2862 151 149 17 chr13 30322040 30322355 -89422543 - LTR8A LTR ERV1 -281 446 1 2264 125 0 0 chr13 30322443 30322748 -89422150 - AluSx SINE Alu -7 305 1 5882 177 38 5 chr13 30323228 30324325 -89420573 + L1M1 LINE L1 943 2076 -5489 2791 34 7 3 chr13 30324325 30324730 -89420168 + MER11A LTR ERVK 1 504 -762 1004 181 0 28 chr13 30324996 30325178 -89419720 - AluJb SINE Alu 0 312 136 396 273 23 2 chr13 30327801 30327977 -89416921 + MIR SINE MIR 13 233 -29 769 285 90 30 chr13 30328086 30329008 -89415890 + L1ME3A LINE L1 3678 4654 -1492 2340 106 96 5 chr13 30329014 30329420 -89415478 - LTR7 LTR ERV1 -7 443 1 482 296 78 14 chr13 30329421 30329908 -89414990 + L1ME3A LINE L1 4650 5167 -979 707 134 45 30 chr13 30329923 30330057 -89414841 + L1M2a LINE L1 -739 4294966692 -7031 266 129 18 33 chr13 30330057 30330117 -89414781 + L1M2a LINE L1 1642 2128 -4299 6690 219 19 5 chr13 30330298 30332179 -89412719 + L1M2a LINE L1 2174 4078 -2348 2383 152 51 54 chr13 30332174 30332726 -89412172 + L1MA6 LINE L1 5751 6300 0 * 327 229 90 64 chr13 30332858 30333045 -89411853 + L1ME3A LINE L1 5683 5881 -289 247 125 0 0 chr13 30333295 30333335 -89411563 - HsTC2 DNA Tc2 -1844 54 15 2375 94 0 3 chr13 30333335 30333634 -89411264 - AluSp SINE Alu -15 298 1 268 265 166 60 chr13 30334622 30334773 -89410125 + MER5A DNA MER1_type 1 167 -22 452 260 46 61 chr13 30335761 30335923 -89408975 - L2 LINE L2 -8 3305 3142 2517 69 0 3 chr13 30335923 30336228 -89408670 + AluY SINE Alu 1 304 -7 453 50 0 0 chr13 30336228 30336288 -89408610 + (TA)n Simple_repeat Simple_repeat 2 61 0 452 260 46 61 chr13 30336288 30336320 -89408578 - L2 LINE L2 -169 3144 3113 2229 108 0 14 chr13 30336526 30336823 -89408075 - AluSx SINE Alu -17 295 3 315 319 41 134 chr13 30337733 30338053 -89406845 - L2 LINE L2 0 3272 2983 250 296 28 0 chr13 30338298 30338369 -89406529 - L2 LINE L2 -7 3265 3193 186 321 71 18 chr13 30338955 30339067 -89405831 - L2 LINE L2 -602 2712 2595 844 251 188 73 chr13 30339098 30339565 -89405333 - MLT1G1 LTR MaLR 0 595 22 2073 146 0 0 chr13 30339626 30339914 -89404984 + AluSx SINE Alu 5 292 -20 1555 192 98 84 chr13 30339923 30340424 -89404474 + MLT2B1 LTR ERVL 13 520 0 280 174 0 0 chr13 30341075 30341121 -89403777 + MIR SINE MIR 112 157 -105 199 204 93 0 chr13 30341159 30341213 -89403685 + MIR SINE MIR 148 206 -56 2293 97 0 3 chr13 30341223 30341523 -89403375 - AluSg SINE Alu -11 299 1 3443 53 24 2 chr13 30342570 30343021 -89401877 + LTR2B LTR ERV1 1 461 -29 499 132 85 9 chr13 30343024 30343130 -89401768 + HERV9 LTR ERV1 787 900 -7726 282 194 0 0 chr13 30343128 30343190 -89401708 + HERV9 LTR ERV1 7503 7564 -835 * 8273 100 85 71 chr13 30343189 30345451 -89399447 + pTR5 LTR ERV1 504 2438 0 2195 83 204 3 chr13 30345478 30345851 -89399047 + LTR7 LTR ERV1 1 448 -2 1477 224 11 50 chr13 30345995 30346325 -89398573 - MLT1A1 LTR MaLR 0 365 50 2147 128 0 3 chr13 30346325 30346615 -89398283 + AluSx SINE Alu 1 289 -23 1477 224 11 50 chr13 30346615 30346664 -89398234 - MLT1A1 LTR MaLR -315 50 1 1294 188 44 32 chr13 30347825 30348166 -89396732 - L1MB4 LINE L1 -6 6174 5830 2495 53 7 0 chr13 30348197 30348496 -89396402 - AluY SINE Alu -10 301 1 2553 231 51 13 chr13 30348524 30349152 -89395746 - MER82 DNA MER2_type 0 653 2 848 181 10 36 chr13 30349158 30349351 -89395547 + MER2 DNA MER2_type 2 189 -156 21 0 0 0 chr13 30349383 30349404 -89395494 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chr13 30349478 30349523 -89395375 + AT_rich Low_complexity Low_complexity 1 45 0 301 92 86 18 chr13 30349529 30349692 -89395206 + (TA)n Simple_repeat Simple_repeat 2 175 0 427 79 86 7 chr13 30349768 30349920 -89394978 + (TA)n Simple_repeat Simple_repeat 1 164 0 187 373 20 72 chr13 30349954 30350107 -89394791 + L2 LINE L2 2566 2710 -604 889 187 66 10 chr13 30350144 30350342 -89394556 + MLT1C LTR MaLR 259 467 0 1873 170 68 32 chr13 30350525 30350966 -89393932 + LTR2B LTR ERV1 34 490 0 406 299 50 58 chr13 30351815 30352056 -89392842 + MIR SINE MIR 8 246 -16 742 319 140 38 chr13 30353314 30353895 -89391003 + L3 LINE CR1 562 1235 -342 2395 106 0 0 chr13 30353895 30354207 -89390691 + AluSx SINE Alu 1 312 0 742 319 140 38 chr13 30354207 30354359 -89390539 + L3 LINE CR1 1235 1370 -207 596 290 109 38 chr13 30354482 30354848 -89390050 - MLT1J LTR MaLR -7 504 113 1557 175 45 25 chr13 30355201 30355487 -89389411 + AluJo SINE Alu 3 294 -18 36 23 0 0 chr13 30355810 30355853 -89389045 + AT_rich Low_complexity Low_complexity 1 43 0 1736 192 0 3 chr13 30355853 30356144 -89388754 - AluJb SINE Alu -22 290 1 287 287 70 31 chr13 30357530 30357659 -89387239 - L2 LINE L2 -426 2888 2755 1511 282 216 17 chr13 30358216 30358978 -89385920 - L2 LINE L2 -550 2764 1778 1643 183 23 3 chr13 30358978 30359278 -89385620 + AluJo SINE Alu 1 306 -6 1511 282 216 17 chr13 30359278 30359456 -89385442 - L2 LINE L2 -1536 1778 1637 2361 109 0 0 chr13 30359659 30359963 -89384935 - AluSx SINE Alu -8 304 1 34 55 0 0 chr13 30360523 30360578 -89384320 + AT_rich Low_complexity Low_complexity 1 55 0 234 186 31 56 chr13 30360589 30360750 -89384148 + (TATAA)n Simple_repeat Simple_repeat 4 160 0 657 191 8 84 chr13 30361221 30361487 -89383411 + MER46C DNA MER2_type 37 334 -4 29 47 0 0 chr13 30361771 30361814 -89383084 + AT_rich Low_complexity Low_complexity 1 43 0 2775 157 42 11 chr13 30363409 30363938 -89380960 - LTR35 LTR ERV1 0 618 74 476 83 14 0 chr13 30364118 30364190 -89380708 - MLT1A1 LTR MaLR 0 396 324 282 111 0 0 chr13 30364188 30364233 -89380665 - MADE1 DNA Mariner -35 45 1 * 507 209 112 84 chr13 30364235 30364522 -89380376 - MLT1A1 LTR MaLR -70 295 1 5016 187 75 148 chr13 30364522 30366391 -89378507 - MLT1A1-int LTR MaLR 0 1735 2 1194 218 41 24 chr13 30366392 30366686 -89378212 - MLT1A1 LTR MaLR 0 365 67 270 313 47 26 chr13 30366872 30367064 -89377834 + MLT1K LTR MaLR 381 576 -12 2414 94 0 0 chr13 30367084 30367392 -89377506 + AluY SINE Alu 1 308 -3 17354 61 1 0 chr13 30367558 30373522 -89371376 + L1PA5 LINE L1 11 6152 -2 226 302 71 71 chr13 30373977 30374103 -89370795 - MIR SINE MIR -117 145 20 516 240 0 0 chr13 30374222 30374318 -89370580 - MER63A DNA MER1_type 0 210 115 1812 174 93 30 chr13 30374318 30374779 -89370119 - LTR2B LTR ERV1 0 490 1 481 232 62 0 chr13 30374777 30374889 -89370009 - MER63A DNA MER1_type 0 120 2 * 259 224 0 82 chr13 30374974 30375072 -89369826 - L1MC4 LINE L1 -1339 6703 6614 3699 196 9 15 chr13 30375090 30375948 -89368950 + L1P LINE L1 4505 5357 -789 406 267 39 61 chr13 30377556 30377736 -89367162 - MER5B DNA MER1_type -2 176 1 1164 248 124 21 chr13 30378852 30379319 -89365579 - MLT1H1 LTR MaLR -6 549 35 497 261 73 32 chr13 30379463 30379681 -89365217 + LTR33A LTR ERVL 297 523 0 535 324 34 0 chr13 30379771 30379950 -89364948 - HERV16 LTR ERVL -3422 1574 1390 235 268 330 0 chr13 30379959 30380071 -89364827 + MER5A DNA MER1_type 41 189 0 274 263 12 0 chr13 30380685 30380765 -89364133 + L1MC4a LINE L1 5557 5637 -2171 302 247 0 22 chr13 30381094 30381183 -89363715 - MLT1L LTR MaLR -528 87 1 301 294 139 13 chr13 30381192 30381430 -89363468 + L1MC4a LINE L1 5639 5906 -1902 210 254 0 0 chr13 30381433 30381492 -89363406 + (TA)n Simple_repeat Simple_repeat 1 59 0 33 43 0 0 chr13 30381567 30381614 -89363284 + AT_rich Low_complexity Low_complexity 1 47 0 213 94 0 0 chr13 30382228 30382260 -89362638 + (TG)n Simple_repeat Simple_repeat 2 33 0 444 318 45 23 chr13 30382260 30382436 -89362462 - MIR SINE MIR -69 193 14 5066 210 57 43 chr13 30382615 30384171 -89360727 - L1M4 LINE L1 -4950 1592 16 1897 152 3 23 chr13 30384538 30384677 -89360221 + AluSx SINE Alu 1 141 -171 2187 136 0 0 chr13 30384677 30384971 -89359927 + AluSg SINE Alu 1 294 -16 1897 152 3 23 chr13 30384971 30385133 -89359765 + AluSx SINE Alu 141 296 -16 220 329 12 12 chr13 30385494 30385579 -89359319 - L2 LINE L2 -2 3270 3186 35 54 0 0 chr13 30385633 30385689 -89359209 + AT_rich Low_complexity Low_complexity 1 56 0 4090 269 108 18 chr13 30386339 30388018 -89356880 + L2 LINE L2 1415 3310 -3 315 219 31 10 chr13 30388388 30388484 -89356414 + L1MEd LINE L1 1022 1119 -5000 1976 146 13 3 chr13 30388546 30388854 -89356044 - MER1B DNA MER1_type 0 339 29 697 355 82 7 chr13 30388942 30389368 -89355530 + L1MEd LINE L1 1198 1655 -4474 6605 75 13 5 chr13 30389368 30392488 -89352410 + L1PA7 LINE L1 2937 6151 -3 400 358 47 12 chr13 30392707 30393048 -89351850 - L1MEc LINE L1 -5997 399 47 389 285 17 52 chr13 30393110 30393282 -89351616 - L1M4 LINE L1 -3119 3027 2862 805 245 20 70 chr13 30393282 30393637 -89351261 + L1ME2 LINE L1 5678 6014 -150 25 0 0 0 chr13 30393681 30393706 -89351192 + AT_rich Low_complexity Low_complexity 1 25 0 1756 188 0 13 chr13 30394100 30394404 -89350494 - AluJo SINE Alu -12 300 1 337 253 144 26 chr13 30395868 30396062 -89348836 + L1ME LINE L1 5017 5233 -913 439 310 138 16 chr13 30396102 30396550 -89348348 + L1ME LINE L1 5297 5799 -363 290 241 17 52 chr13 30396721 30396895 -89348003 + (TA)n Simple_repeat Simple_repeat 2 169 0 182 218 0 18 chr13 30396935 30396990 -89347908 + GA-rich Low_complexity Low_complexity 1 54 0 354 271 8 54 chr13 30397001 30397130 -89347768 - MIR SINE MIR -14 248 126 2015 167 34 0 chr13 30398010 30398364 -89346534 + MER47A DNA MER2_type 1 366 0 236 297 0 14 chr13 30398578 30398652 -89346246 - MLT1J2 LTR MaLR -308 142 70 442 288 70 90 chr13 30399020 30399167 -89345731 - L2 LINE L2 -102 3211 3063 2453 66 0 7 chr13 30399167 30399470 -89345428 - AluY SINE Alu -9 302 2 442 288 70 90 chr13 30399470 30399735 -89345163 - L2 LINE L2 -250 3063 2807 1711 214 66 35 chr13 30400128 30400614 -89344284 + L1MC2 LINE L1 21 521 -5905 * 2251 173 24 30 chr13 30400605 30401063 -89343835 + L1MC2 LINE L1 1063 1605 -4821 1777 136 44 57 chr13 30401063 30401379 -89343519 + AluJb SINE Alu 1 312 0 2251 173 24 30 chr13 30401379 30401732 -89343166 + L1MC2 LINE L1 1605 1959 -4467 * 4889 228 24 47 chr13 30401721 30403642 -89341256 + L1MC2 LINE L1 2256 4123 -2303 318 290 0 0 chr13 30403643 30403736 -89341162 + L1MC2 LINE L1 4308 4400 -2026 * 6128 147 21 74 chr13 30403733 30405317 -89339581 + L1MC2 LINE L1 5153 6624 0 1996 199 19 28 chr13 30407683 30408146 -89336752 - LTR40b LTR ERVL -3 459 1 1957 144 0 3 chr13 30408223 30408515 -89336383 - AluSx SINE Alu -21 291 1 2322 138 54 0 chr13 30408725 30409095 -89335803 + MLT1B LTR MaLR 1 390 0 2268 119 0 0 chr13 30409556 30409859 -89335039 + AluSx SINE Alu 1 303 -9 736 126 0 0 chr13 30409861 30409964 -89334934 + AluSp/q SINE Alu 188 290 -23 2063 151 27 0 chr13 30410007 30410345 -89334553 + MER7A DNA MER2_type 1 345 -1 2608 150 13 4 chr13 30410613 30411072 -89333826 - L1MC2 LINE L1 -8 6336 5874 308 237 0 0 chr13 30411170 30411229 -89333669 - L2 LINE L2 -219 3053 2995 208 391 82 9 chr13 30411453 30411563 -89333335 - MIR SINE MIR -57 151 34 901 292 115 5 chr13 30411643 30412016 -89332882 + ERVL LTR ERVL 4719 5132 -632 892 256 79 15 chr13 30412026 30412366 -89332532 + LTR33A LTR ERVL 162 523 0 234 339 16 39 chr13 30412366 30412493 -89332405 + L2 LINE L2 2146 2269 -1045 319 343 64 17 chr13 30412529 30412701 -89332197 - MLT1I LTR MaLR 0 409 230 238 315 96 52 chr13 30412806 30413076 -89331822 + L2 LINE L2 2321 2602 -712 341 308 175 0 chr13 30414053 30414196 -89330702 - MIR SINE MIR -86 176 9 228 349 12 12 chr13 30414207 30414290 -89330608 + L2 LINE L2 3189 3271 -1 267 79 0 0 chr13 30415249 30415287 -89329611 + (TG)n Simple_repeat Simple_repeat 1 38 0 456 19 0 0 chr13 30415556 30415609 -89329289 + (CA)n Simple_repeat Simple_repeat 2 54 0 284 292 97 0 chr13 30417035 30417148 -89327750 + MIR SINE MIR 74 197 -65 587 350 49 55 chr13 30417822 30418390 -89326508 + L1MEd LINE L1 855 1419 -5111 692 164 109 134 chr13 30418409 30418645 -89326253 + MLT1B LTR MaLR 39 268 -122 2211 196 108 65 chr13 30418645 30419310 -89325588 - LTR8A LTR ERV1 0 727 34 600 167 16 24 chr13 30419326 30419452 -89325446 + MLT1B LTR MaLR 266 390 0 482 221 21 35 chr13 30419490 30419635 -89325263 + L1MEd LINE L1 1474 1616 -4914 274 291 50 21 chr13 30419823 30419964 -89324934 + L1MEd LINE L1 1832 1976 -4564 192 111 0 0 chr13 30420439 30420475 -89324423 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 254 250 0 17 chr13 30420751 30420811 -89324087 + GA-rich Low_complexity Low_complexity 2 60 0 3360 124 4 4 chr13 30420958 30421459 -89323439 + MER1A DNA MER1_type 29 529 0 4951 63 11 0 chr13 30421788 30422425 -89322473 - L1PA8 LINE L1 -3 6169 5526 2597 98 25 6 chr13 30423370 30423727 -89321171 + THE1B LTR MaLR 1 364 0 416 241 43 0 chr13 30423811 30423927 -89320971 - MER45A DNA AcHobo 0 178 58 270 339 26 0 chr13 30424389 30424504 -89320394 - MIR SINE MIR -112 150 33 502 273 65 25 chr13 30425190 30425381 -89319517 + MIR SINE MIR 3 195 -62 236 274 69 0 chr13 30425381 30425483 -89319415 + L1ME3A LINE L1 3 111 -6008 214 185 272 0 chr13 30425531 30425623 -89319275 + L2 LINE L2 2949 3065 -248 182 277 0 0 chr13 30425713 30425760 -89319138 + L2 LINE L2 3267 3313 0 348 193 57 23 chr13 30426592 30426680 -89318218 + MER5A DNA MER1_type 1 91 -98 2251 99 10 0 chr13 30426683 30426987 -89317911 - AluSp SINE Alu -2 311 5 499 153 41 0 chr13 30427177 30427275 -89317623 + MER5A DNA MER1_type 88 189 0 215 327 19 29 chr13 30427182 30427286 -89317612 - MER5A DNA MER1_type -83 106 4 * 1382 187 146 31 chr13 30427529 30427947 -89316951 + MER31B LTR ERV1 1 466 0 955 188 8 109 chr13 30428054 30428293 -89316605 + AluJo SINE Alu 3 217 -95 252 171 0 0 chr13 30428294 30428335 -89316563 + FLAM SINE Alu 84 124 -9 321 26 0 0 chr13 30428433 30428471 -89316427 + (TC)n Simple_repeat Simple_repeat 2 39 0 356 311 102 8 chr13 30431346 30431590 -89313308 + L1ME3A LINE L1 3034 3300 -2829 378 282 20 67 chr13 30431914 30432063 -89312835 - MIR SINE MIR -84 178 37 294 95 0 0 chr13 30432705 30432747 -89312151 + (GAA)n Simple_repeat Simple_repeat 2 43 0 526 308 45 32 chr13 30434079 30434326 -89310572 + L1ME3A LINE L1 3662 3911 -2218 1770 174 14 0 chr13 30434353 30434714 -89310184 - AluSx SINE Alu 0 365 1 21 0 0 0 chr13 30434721 30434742 -89310156 + AT_rich Low_complexity Low_complexity 1 21 0 2545 212 36 15 chr13 30434747 30435275 -89309623 - MLT1F LTR MaLR 0 542 4 237 294 42 25 chr13 30435314 30435433 -89309465 + L1ME3A LINE L1 3999 4119 -2010 2109 139 7 3 chr13 30435452 30435753 -89309145 + AluJb SINE Alu 1 302 -10 552 323 69 37 chr13 30435963 30436313 -89308585 + L1ME3A LINE L1 4481 4841 -1288 312 27 0 0 chr13 30436995 30437032 -89307866 + (ATG)n Simple_repeat Simple_repeat 2 38 0 633 68 39 0 chr13 30437032 30437135 -89307763 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 195 302 0 16 chr13 30437484 30437547 -89307351 + MER5B DNA MER1_type 7 68 -110 189 217 22 22 chr13 30437558 30437604 -89307294 - MER5B DNA MER1_type -131 47 2 647 282 104 6 chr13 30437867 30438101 -89306797 - MIR SINE MIR -3 259 4 203 343 0 43 chr13 30438555 30438625 -89306273 - L2 LINE L2 -5 3267 3201 188 323 147 63 chr13 30440755 30441089 -89303809 + L2 LINE L2 2906 3267 -5 2419 86 0 10 chr13 30441220 30441522 -89303376 + AluSc SINE Alu 5 303 -6 21 36 0 0 chr13 30442321 30442349 -89302549 + AT_rich Low_complexity Low_complexity 1 28 0 1773 315 65 17 chr13 30442963 30443611 -89301287 - MER115 DNA AcHobo -11 682 4 1227 275 56 11 chr13 30444151 30444598 -89300300 + L1ME3A LINE L1 5494 5960 -193 1580 178 40 36 chr13 30444605 30444908 -89299990 + AluJo SINE Alu 1 304 -8 648 232 124 36 chr13 30445895 30446089 -89298809 + MIR SINE MIR 49 259 -3 1837 143 0 41 chr13 30446279 30446694 -89298204 + AluSx SINE Alu 2 404 0 750 161 200 0 chr13 30447438 30447593 -89297305 + MER5A DNA MER1_type 1 186 -3 1802 135 95 20 chr13 30447595 30447944 -89296954 - THE1C LTR MaLR 0 375 1 1945 114 75 33 chr13 30448096 30448456 -89296442 - THE1C LTR MaLR 0 375 1 236 215 7 36 chr13 30448652 30448771 -89296127 - L1MDa LINE L1 -3969 2571 2454 236 310 23 62 chr13 30449259 30449388 -89295510 + MLT1I LTR MaLR 269 392 -17 644 235 60 0 chr13 30449389 30449555 -89295343 - MER58C DNA MER1_type 0 215 40 2954 216 59 35 chr13 30449766 30450514 -89294384 - L1MCb LINE L1 -3040 3524 2796 1400 166 15 109 chr13 30450514 30450917 -89293981 - MLT1A1 LTR MaLR 0 365 1 2954 216 59 35 chr13 30450917 30451585 -89293313 - L1MCb LINE L1 -3768 2796 2146 2034 148 0 7 chr13 30451585 30451889 -89293009 - AluSx SINE Alu -10 302 1 2954 216 59 35 chr13 30451889 30452029 -89292869 - L1MCb LINE L1 -4418 2146 2011 1060 200 0 0 chr13 30452029 30452204 -89292694 - FAM SINE Alu 0 175 1 2954 216 59 35 chr13 30452204 30452975 -89291923 - L1MCb LINE L1 -4553 2011 1049 538 253 18 29 chr13 30452975 30453145 -89291753 - L1MCb LINE L1 -5870 175 8 338 221 57 6 chr13 30453163 30453321 -89291577 - L1MDa LINE L1 -4055 2485 2320 2529 104 6 8 chr13 30453325 30453679 -89291219 + THE1A LTR MaLR 1 353 -2 270 0 0 0 chr13 30453719 30453749 -89291149 + (CA)n Simple_repeat Simple_repeat 2 31 0 2020 230 38 11 chr13 30453749 30454270 -89290628 + MER74A LTR ERVL 10 544 -14 7490 223 76 22 chr13 30454283 30455325 -89289573 - L1MDa LINE L1 -4226 2314 1329 4498 71 3 0 chr13 30455325 30455902 -89288996 - L1PA7 LINE L1 -3 6151 5573 7490 223 76 22 chr13 30455902 30457038 -89287860 - L1MDa LINE L1 -5211 1329 19 461 301 75 43 chr13 30457050 30457329 -89287569 - L1 LINE L1 -1127 5019 4732 229 289 169 0 chr13 30457833 30457916 -89286982 + L2 LINE L2 3208 3304 -9 21 36 0 0 chr13 30458428 30458456 -89286442 + AT_rich Low_complexity Low_complexity 1 28 0 320 270 35 35 chr13 30458645 30458760 -89286138 - MLT1J LTR MaLR -67 444 330 186 43 0 0 chr13 30458846 30458869 -89286029 + (TA)n Simple_repeat Simple_repeat 1 23 0 2515 122 12 41 chr13 30458872 30459244 -89285654 - L1PB3 LINE L1 -7 6147 5787 2258 116 7 0 chr13 30459244 30459546 -89285352 - AluSx SINE Alu -8 304 1 2515 122 12 41 chr13 30459546 30459592 -89285306 - L1PB3 LINE L1 -367 5787 5741 276 356 50 0 chr13 30459700 30459801 -89285097 + MIR SINE MIR 1 106 -156 1382 238 118 72 chr13 30459847 30460414 -89284484 - MLT1E LTR MaLR 0 593 1 2081 124 3 0 chr13 30460491 30460781 -89284117 - AluSx SINE Alu -15 297 7 1241 237 134 46 chr13 30461711 30462280 -89282618 + L1MEc LINE L1 1295 1812 -4584 315 0 0 0 chr13 30462280 30462315 -89282583 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1241 237 134 46 chr13 30462315 30462409 -89282489 + L1MEc LINE L1 1812 1896 -4500 2141 104 3 10 chr13 30462409 30462707 -89282191 + AluSx SINE Alu 1 296 -16 1241 237 134 46 chr13 30462707 30462756 -89282142 + L1MEc LINE L1 1896 1939 -4457 180 0 0 0 chr13 30462756 30462776 -89282122 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 1241 237 134 46 chr13 30462776 30462961 -89281937 + L1MEc LINE L1 1939 2274 -4122 780 218 143 4 chr13 30462967 30463247 -89281651 + MER33 DNA MER1_type 6 324 0 253 270 104 0 chr13 30463247 30463362 -89281536 + L1MEc LINE L1 2268 2394 -4002 278 131 246 0 chr13 30463401 30463462 -89281436 - MADE1 DNA Mariner -4 76 1 532 327 183 26 chr13 30463994 30464529 -89280369 + L3 LINE CR1 958 1576 -1 1810 181 29 12 chr13 30464638 30464980 -89279918 - MER7A DNA MER2_type 0 346 1 1554 120 58 82 chr13 30465607 30465899 -89278999 + AluJb SINE Alu 1 285 -27 27 29 0 0 chr13 30465970 30466004 -89278894 + AT_rich Low_complexity Low_complexity 1 34 0 331 229 110 0 chr13 30466316 30466425 -89278473 + MLT1J LTR MaLR 3 123 -388 267 246 0 43 chr13 30466781 30466850 -89278048 + MLT1J2 LTR MaLR 265 330 -120 861 222 11 0 chr13 30467497 30467677 -89277221 - MER97c DNA MER1_type? -908 182 1 22 35 0 0 chr13 30467786 30467815 -89277083 + AT_rich Low_complexity Low_complexity 1 29 0 477 222 269 0 chr13 30467906 30468077 -89276821 + LTR50 LTR ERVL 579 795 0 240 307 123 45 chr13 30468217 30468396 -89276502 + MIR SINE MIR 20 212 -50 37 76 0 0 chr13 30469329 30469408 -89275490 + AT_rich Low_complexity Low_complexity 1 79 0 180 247 68 27 chr13 30469824 30469897 -89275001 + L2 LINE L2 2301 2376 -938 615 121 0 0 chr13 30470160 30470259 -89274639 + (TCTCC)n Simple_repeat Simple_repeat 2 100 0 465 87 19 48 chr13 30470244 30470347 -89274551 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 * 1940 180 0 0 chr13 30470355 30470660 -89274238 - AluJb SINE Alu -7 305 1 2091 131 23 11 chr13 30471243 30471594 -89273304 + THE1A LTR MaLR 1 355 0 11339 89 12 22 chr13 30471594 30472014 -89272884 + THE1A-int LTR MaLR 1 423 -1157 2224 109 0 0 chr13 30472014 30472307 -89272591 - AluSx SINE Alu 0 312 20 11339 89 12 22 chr13 30472307 30473481 -89271417 + THE1A-int LTR MaLR 423 1580 0 2037 129 26 11 chr13 30473481 30473831 -89271067 + THE1A LTR MaLR 1 355 0 815 291 82 12 chr13 30474195 30474514 -89270384 + MLT1H LTR MaLR 209 549 0 409 301 92 32 chr13 30474960 30475209 -89269689 + HAL1b LINE L1 225 488 -860 438 248 27 7 chr13 30475576 30475725 -89269173 - MLT2B1 LTR ERVL -42 478 327 48 72 0 0 chr13 30476092 30476189 -89268709 + AT_rich Low_complexity Low_complexity 1 97 0 2154 118 21 0 chr13 30476492 30476779 -89268119 + AluSx SINE Alu 1 293 -19 502 254 144 28 chr13 30477116 30477435 -89267463 + HsTC2 DNA Tc2 498 853 -1045 251 277 54 8 chr13 30477643 30477773 -89267125 + L1ME4a LINE L1 5974 6109 -12 2178 171 66 34 chr13 30477923 30478511 -89266387 - MER21B LTR ERV1 -15 856 199 456 86 0 0 chr13 30478511 30478581 -89266317 - MER57B LTR ERV1 0 434 365 254 121 61 10 chr13 30478904 30479003 -89265895 + (TA)n Simple_repeat Simple_repeat 1 104 0 208 137 39 0 chr13 30479063 30479114 -89265784 + (TA)n Simple_repeat Simple_repeat 1 53 0 207 233 116 101 chr13 30479116 30479245 -89265653 + L3 LINE CR1 618 748 -829 217 317 35 48 chr13 30479415 30479560 -89265338 - MER5A DNA MER1_type -43 146 4 329 252 111 74 chr13 30480251 30480386 -89264512 + MIR3 SINE MIR 9 148 -60 250 255 54 54 chr13 30480407 30480556 -89264342 - MLT1J2 LTR MaLR 0 450 302 415 275 41 119 chr13 30481013 30481282 -89263616 - MIR SINE MIR 0 262 15 186 302 16 63 chr13 30481294 30481357 -89263541 - MIR SINE MIR -62 146 87 24 0 0 0 chr13 30481698 30481722 -89263176 + AT_rich Low_complexity Low_complexity 1 24 0 255 259 47 0 chr13 30482216 30482301 -89262597 + CT-rich Low_complexity Low_complexity 3 91 0 327 262 138 11 chr13 30482457 30482677 -89262221 + L1M4 LINE L1 1054 1198 -1309 951 283 188 50 chr13 30483306 30483481 -89261417 + HAL1 LINE L1 123 273 -2234 2258 189 36 72 chr13 30483481 30484116 -89260782 + LTR9 LTR ERV1 1 612 0 951 283 188 50 chr13 30484116 30484681 -89260217 + HAL1 LINE L1 273 759 -1748 1540 196 36 0 chr13 30484681 30484961 -89259937 + AluJo SINE Alu 13 302 -10 951 283 188 50 chr13 30484961 30485065 -89259833 + HAL1 LINE L1 759 847 -1660 1826 202 66 7 chr13 30485065 30485505 -89259393 - MLT1C LTR MaLR -1 466 1 951 283 188 50 chr13 30485505 30486453 -89258445 + HAL1 LINE L1 847 2164 -343 232 204 0 0 chr13 30486639 30486688 -89258210 + HAL1 LINE L1 1490 1538 -969 206 323 31 0 chr13 30486688 30486753 -89258145 + L2 LINE L2 2512 2578 -736 361 248 91 52 chr13 30486920 30487150 -89257748 + LTR40b LTR ERVL 136 374 -88 2104 209 87 26 chr13 30487201 30487809 -89257089 + L1MB7 LINE L1 5530 6174 -10 260 263 37 37 chr13 30487810 30488000 -89256898 + HAL1 LINE L1 991 1180 -1327 323 282 224 4 chr13 30488375 30488634 -89256264 + HAL1 LINE L1 1557 1872 -635 2193 123 0 13 chr13 30488649 30488957 -89255941 + AluSc SINE Alu 2 305 -4 372 284 195 2 chr13 30489407 30489592 -89255306 + HAL1b LINE L1 754 2358 -149 436 174 42 8 chr13 30489662 30489798 -89255100 + L1MA4A LINE L1 2249 2350 -157 994 153 7 0 chr13 30489881 30490077 -89254821 + AluSg/x SINE Alu 132 328 0 2627 51 0 3 chr13 30490592 30490904 -89253994 + AluY SINE Alu 1 311 0 229 289 184 7 chr13 30491786 30491938 -89252960 + MIR SINE MIR 15 193 -69 286 250 92 0 chr13 30492303 30492379 -89252519 - MER63 DNA MER1_type 0 1061 979 395 227 0 0 chr13 30492382 30492457 -89252441 - MER63 DNA MER1_type -312 750 676 360 242 39 92 chr13 30492565 30492718 -89252180 - MIR SINE MIR -76 186 42 805 208 51 10 chr13 30493017 30493214 -89251684 + MSTB2 LTR MaLR 1 205 -252 6785 58 16 0 chr13 30493272 30494270 -89250628 - L1PA7 LINE L1 -13 6141 5142 2623 73 14 0 chr13 30494271 30494642 -89250256 + L1P LINE L1 4064 4439 -1707 888 170 18 58 chr13 30494664 30494888 -89250010 + MSTB2 LTR MaLR 243 457 0 266 310 159 0 chr13 30495594 30495707 -89249191 - L2 LINE L2 -2 3270 3140 187 238 12 88 chr13 30496127 30496207 -89248691 - L2 LINE L2 -549 2765 2692 2426 79 0 16 chr13 30497804 30498109 -89246789 - AluSc SINE Alu -9 300 1 207 123 53 18 chr13 30498810 30498867 -89246031 + (TTA)n Simple_repeat Simple_repeat 3 61 0 432 297 51 0 chr13 30498868 30498986 -89245912 + L2 LINE L2 3149 3272 0 1375 191 78 50 chr13 30499184 30499582 -89245316 - LTR27 LTR ERV1 -22 614 206 181 293 24 0 chr13 30499667 30499708 -89245190 + L3 LINE CR1 1529 1570 -7 1094 135 43 5 chr13 30499926 30500111 -89244787 - LTR28 LTR ERV1 -816 204 13 356 253 68 27 chr13 30500235 30500381 -89244517 - Charlie8 DNA MER1_type -2214 203 52 557 351 93 47 chr13 30500667 30501304 -89243594 + L2 LINE L2 2572 3251 -21 23 54 0 0 chr13 30501738 30501775 -89243123 + AT_rich Low_complexity Low_complexity 1 37 0 1016 199 0 6 chr13 30504242 30504413 -89240485 + AluJb SINE Alu 133 302 -10 4078 89 32 0 chr13 30504845 30505429 -89239469 + L1PA10 LINE L1 5566 6168 0 2192 114 0 3 chr13 30506351 30506649 -89238249 + AluSq SINE Alu 2 298 -15 247 234 26 0 chr13 30506686 30506763 -89238135 + L1MC4 LINE L1 6617 6695 -1347 474 299 73 0 chr13 30506803 30506967 -89237931 - MIR SINE MIR -4 258 83 180 364 13 0 chr13 30507090 30507167 -89237731 + L2 LINE L2 3235 3312 -1 25 0 0 0 chr13 30508092 30508117 -89236781 + AT_rich Low_complexity Low_complexity 1 25 0 344 216 159 0 chr13 30509580 30509668 -89235230 - MIR3 SINE MIR -4 204 103 214 159 91 0 chr13 30510367 30510411 -89234487 - MIR3 SINE MIR -6 202 155 296 350 21 14 chr13 30510433 30510576 -89234322 - MER5A DNA MER1_type -9 180 37 2294 107 0 3 chr13 30511373 30511673 -89233225 + AluSq SINE Alu 1 299 -14 261 319 118 8 chr13 30514856 30514975 -89229923 - MIR3 SINE MIR -9 199 68 3808 167 30 13 chr13 30515208 30515907 -89228991 - MER50 LTR ERV1 -23 711 1 1692 198 149 28 chr13 30517367 30517876 -89227022 + LTR1B LTR ERV1 1 571 -255 256 200 36 0 chr13 30517952 30518007 -89226891 - L2 LINE L2 -3 3310 3254 295 328 35 9 chr13 30520108 30520224 -89224674 + MIR SINE MIR 117 235 -27 336 313 148 8 chr13 30520362 30520490 -89224408 - MER5A DNA MER1_type 0 189 44 251 362 16 16 chr13 30520851 30520978 -89223920 - L2 LINE L2 -3 3269 3143 1166 209 25 11 chr13 30521063 30521487 -89223411 - MLT1D LTR MaLR 0 505 1 201 281 18 18 chr13 30521499 30521556 -89223342 - L2 LINE L2 -208 3064 3008 6384 148 21 24 chr13 30521689 30521864 -89223034 + L1MA4 LINE L1 4825 4999 -1301 2119 108 16 13 chr13 30521864 30522170 -89222728 + AluSg SINE Alu 1 307 -3 6384 148 21 24 chr13 30522170 30523470 -89221428 + L1MA4 LINE L1 4999 6295 -5 2329 85 3 0 chr13 30523478 30523771 -89221127 + AluSx SINE Alu 11 304 -8 836 206 82 5 chr13 30523807 30524026 -89220872 + L1MD3 LINE L1 7759 7994 -1 247 320 229 20 chr13 30524195 30524448 -89220450 - L2 LINE L2 -431 2883 2578 649 263 6 40 chr13 30524467 30524674 -89220224 + MIR SINE MIR 52 248 -14 319 279 146 53 chr13 30524892 30525139 -89219759 - L2 LINE L2 -921 2393 2124 446 281 41 53 chr13 30525174 30525345 -89219553 + L2 LINE L2 3104 3272 0 351 60 0 0 chr13 30525554 30525604 -89219294 + (ATG)n Simple_repeat Simple_repeat 2 51 0 2577 265 131 1 chr13 30525949 30526880 -89218018 + L2 LINE L2 1866 2917 -397 287 297 0 0 chr13 30527509 30527583 -89217315 - MIR SINE MIR -21 241 168 1880 154 7 3 chr13 30528405 30528763 -89216135 + AluSx SINE Alu 1 312 0 205 239 106 80 chr13 30529680 30529793 -89215105 - L2 LINE L2 -18 3295 3180 758 160 0 23 chr13 30531174 30531305 -89213593 + MLT1B LTR MaLR 5 132 -258 1399 144 14 0 chr13 30532511 30532726 -89212172 - MLT1B LTR MaLR -22 368 151 229 361 28 37 chr13 30532924 30533140 -89211758 + L2 LINE L2 941 1154 -2160 1274 139 12 101 chr13 30533706 30533964 -89210934 + MLT2C2 LTR ERVL 230 464 0 1373 206 7 31 chr13 30534449 30534595 -89210303 + AluJo SINE Alu 1 149 -168 2295 102 0 0 chr13 30534595 30534890 -89210008 + AluSc SINE Alu 1 295 -14 1373 206 7 31 chr13 30534890 30535067 -89209831 + AluJo SINE Alu 149 317 0 2290 136 109 13 chr13 30535238 30535634 -89209264 - Tigger2a DNA MER2_type 0 434 1 2414 60 0 3 chr13 30588187 30588488 -89156410 + AluY SINE Alu 1 300 -11 1633 94 17 6 chr13 30588493 30588734 -89156164 + L1PB1 LINE L1 5888 6129 -22 2020 131 0 0 chr13 30589543 30589848 -89155050 - AluJb SINE Alu 0 305 1 32 0 0 0 chr13 30590046 30590078 -89154820 + AT_rich Low_complexity Low_complexity 1 32 0 268 200 0 0 chr13 30590280 30590325 -89154573 + AluSc SINE Alu 127 171 -128 935 144 0 0 chr13 30590327 30590459 -89154439 + AluJo/FRAM SINE Alu 156 287 -25 698 238 101 98 chr13 30590507 30591420 -89153478 + L1MC5 LINE L1 7036 7951 -10 479 209 9 204 chr13 30591468 30591688 -89153210 + MER5B DNA MER1_type 1 177 -1 422 323 29 31 chr13 30591972 30592183 -89152715 - MIR SINE MIR -50 212 3 2225 86 21 0 chr13 30592565 30592855 -89152043 - AluSg SINE Alu -14 296 1 942 107 14 7 chr13 30592983 30593123 -89151775 - AluSq/x SINE Alu -171 141 1 293 195 0 6 chr13 30593612 30593675 -89151223 + FLAM SINE Alu 76 127 -6 1084 259 171 36 chr13 30593684 30594239 -89150659 + HAL1 LINE L1 241 870 -1637 694 237 43 61 chr13 30594244 30594523 -89150375 + HAL1 LINE L1 788 1061 -1446 267 54 0 0 chr13 30594543 30594580 -89150318 + (CA)n Simple_repeat Simple_repeat 2 38 0 226 263 15 86 chr13 30594587 30594785 -89150113 + HAL1 LINE L1 1758 1941 -566 261 57 0 0 chr13 30594785 30594820 -89150078 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1714 108 13 0 chr13 30594829 30595060 -89149838 - AluSp SINE Alu -36 277 44 502 151 0 43 chr13 30595286 30595379 -89149519 + FLAM_C SINE Alu 47 135 -8 858 238 76 39 chr13 30596219 30596576 -89148322 - L1MC5 LINE L1 -426 7535 7166 30 83 0 0 chr13 30597118 30597190 -89147708 + AT_rich Low_complexity Low_complexity 1 72 0 2424 69 0 3 chr13 30597503 30597808 -89147090 - AluY SINE Alu -7 304 1 257 299 16 136 chr13 30599456 30599640 -89145258 - MER5B DNA MER1_type -7 171 10 185 244 35 70 chr13 30599675 30599761 -89145137 + L2 LINE L2 2888 2959 -313 1815 151 10 20 chr13 30600345 30600644 -89144254 + AluSx SINE Alu 1 296 -16 229 261 145 0 chr13 30600891 30600960 -89143938 - L2 LINE L2 -15 3257 3179 2149 178 47 34 chr13 30601545 30602012 -89142886 + MLT2B2 LTR ERVL 4 476 -39 243 301 0 14 chr13 30602014 30602087 -89142811 + (TA)n Simple_repeat Simple_repeat 1 72 0 354 272 53 35 chr13 30603209 30603323 -89141575 + L2 LINE L2 3156 3271 -1 1563 193 0 37 chr13 30603932 30604228 -89140670 + AluJb SINE Alu 1 285 -27 275 241 89 27 chr13 30604935 30605047 -89139851 - L1MC5 LINE L1 -44 7917 7799 215 278 133 11 chr13 30605842 30605932 -89138966 + MER91C DNA MER1_type 2 102 -38 21 0 0 0 chr13 30607593 30607614 -89137284 + AT_rich Low_complexity Low_complexity 1 21 0 339 181 236 0 chr13 30607651 30607723 -89137175 - Tigger5 DNA MER2_type -1 2322 2234 1260 161 22 0 chr13 30607848 30608078 -89136820 - L1MA4 LINE L1 0 6300 6066 2024 112 11 3 chr13 30608085 30608372 -89136526 + AluSx SINE Alu 5 293 -19 911 186 54 14 chr13 30608523 30608744 -89136154 - MER20B DNA MER1_type -1 782 553 1789 221 93 41 chr13 30608991 30609552 -89135346 - L1ME2 LINE L1 -121 6043 5454 2001 113 28 7 chr13 30609753 30610044 -89134854 - AluSx SINE Alu -15 297 1 2154 122 3 0 chr13 30610051 30610355 -89134543 - AluSp SINE Alu -8 305 1 22 35 0 0 chr13 30610557 30610586 -89134312 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr13 30610816 30610860 -89134038 + AT_rich Low_complexity Low_complexity 1 44 0 197 271 224 28 chr13 30611279 30611386 -89133512 + L2 LINE L2 3138 3265 -7 2195 103 0 3 chr13 30611567 30611857 -89133041 + AluY SINE Alu 1 289 -22 1698 167 21 0 chr13 30612393 30612675 -89132223 - AluJo SINE Alu -24 288 1 1712 154 28 18 chr13 30613237 30613522 -89131376 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr13 30614416 30614437 -89130461 + AT_rich Low_complexity Low_complexity 1 21 0 600 203 42 0 chr13 30616183 30616301 -89128597 + MER58B DNA MER1_type 216 338 -3 408 294 59 7 chr13 30616313 30616449 -89128449 - MIR SINE MIR -111 151 9 379 216 207 0 chr13 30616498 30616609 -89128289 + MER104 DNA Tc2 47 180 0 202 222 0 0 chr13 30617910 30617946 -89126952 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 263 270 88 7 chr13 30617958 30618106 -89126792 - L1ME3A LINE L1 -220 5950 5791 726 267 11 11 chr13 30618280 30618456 -89126442 - MER5B DNA MER1_type -1 177 2 296 280 104 0 chr13 30618457 30618582 -89126316 - L1ME3A LINE L1 -515 5649 5512 243 0 0 0 chr13 30619152 30619179 -89125719 + (T)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chr13 30620395 30620427 -89124471 + AT_rich Low_complexity Low_complexity 1 32 0 1206 197 106 23 chr13 30624459 30624723 -89120175 - AluJo SINE Alu -26 286 1 2032 75 8 8 chr13 30625487 30625754 -89119144 - AluSg1 SINE Alu -9 300 34 30 69 0 0 chr13 30626405 30626463 -89118435 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr13 30626665 30626702 -89118196 + AT_rich Low_complexity Low_complexity 1 37 0 670 274 102 6 chr13 30626812 30627155 -89117743 - L1ME4a LINE L1 -264 5857 5482 388 253 140 26 chr13 30627211 30627509 -89117389 - L1ME4a LINE L1 -738 5426 5086 375 300 40 25 chr13 30627547 30627709 -89117189 + MER5A DNA MER1_type 1 179 -10 387 329 75 32 chr13 30627726 30628006 -89116892 - L1ME4a LINE L1 -1125 5021 4730 210 171 0 0 chr13 30628331 30628372 -89116526 + (CA)n Simple_repeat Simple_repeat 1 41 0 24 0 0 0 chr13 30628526 30628550 -89116348 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 30628860 30628888 -89116010 + AT_rich Low_complexity Low_complexity 1 28 0 614 282 111 9 chr13 30630195 30630411 -89114487 - MIR SINE MIR -21 241 4 2047 133 7 3 chr13 30630908 30631202 -89113696 - AluSx SINE Alu -17 295 1 251 86 0 0 chr13 30631218 30631253 -89113645 - U2 snRNA snRNA -153 35 1 316 293 96 30 chr13 30631566 30631733 -89113165 - L1ME4a LINE L1 -1726 4420 4243 1556 179 51 4 chr13 30632424 30632697 -89112201 - AluJo SINE Alu -24 288 3 2299 95 0 0 chr13 30632728 30633063 -89111835 + AluSx SINE Alu 1 335 0 195 133 0 0 chr13 30634512 30634542 -89110356 - L2 LINE L2 -7 3306 3277 4964 97 13 49 chr13 30634633 30634818 -89110080 - Tigger4(Zombi) DNA MER2_type 0 2731 2541 2214 121 0 0 chr13 30634818 30635115 -89109783 - AluSx SINE Alu -15 297 1 4964 97 13 49 chr13 30635115 30635428 -89109470 - Tigger4(Zombi) DNA MER2_type -190 2541 2218 2156 131 3 13 chr13 30635428 30635740 -89109158 + AluSx SINE Alu 1 309 -3 4964 97 13 49 chr13 30635740 30635910 -89108988 - Tigger4(Zombi) DNA MER2_type -513 2218 2097 2262 97 0 3 chr13 30635910 30636208 -89108690 - AluSc SINE Alu -12 297 1 4964 97 13 49 chr13 30636208 30636392 -89108506 - Tigger4(Zombi) DNA MER2_type -634 2097 1908 8749 106 37 82 chr13 30636412 30637102 -89107796 - Tigger4(Zombi) DNA MER2_type -1140 1591 872 868 97 0 0 chr13 30637102 30637216 -89107682 + AluSp/q SINE Alu 190 303 -10 8749 106 37 82 chr13 30637216 30637741 -89107157 - Tigger4(Zombi) DNA MER2_type -1859 872 349 186 103 0 0 chr13 30637741 30637770 -89107128 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8749 106 37 82 chr13 30637770 30638105 -89106793 - Tigger4(Zombi) DNA MER2_type -2382 349 1 235 363 20 20 chr13 30638478 30638580 -89106318 + MIR SINE MIR 22 123 -85 204 323 77 0 chr13 30638958 30639023 -89105875 + L2 LINE L2 3138 3207 -65 643 135 0 0 chr13 30639179 30639275 -89105623 - AluJb SINE Alu -20 292 197 2188 102 3 0 chr13 30639289 30639583 -89105315 - AluSg SINE Alu -15 295 1 1038 156 69 0 chr13 30639589 30639807 -89105091 - L1MB7 LINE L1 -1 6183 5951 272 283 163 0 chr13 30639935 30640027 -89104871 + MIR3 SINE MIR 75 181 -27 377 303 84 87 chr13 30640346 30640532 -89104366 - L1M2 LINE L1 -5509 1340 1155 193 29 59 0 chr13 30640532 30640566 -89104332 + (CAGCG)n Simple_repeat Simple_repeat 3 38 0 377 303 84 87 chr13 30640566 30640917 -89103981 - L1M2 LINE L1 -5694 1155 805 540 286 99 19 chr13 30641977 30642190 -89102708 - MIR SINE MIR -12 250 21 183 80 0 0 chr13 30643012 30643037 -89101861 + (TG)n Simple_repeat Simple_repeat 2 26 0 2398 255 35 14 chr13 30643625 30644339 -89100559 - HsTC2c DNA MER2_type 0 729 1 418 264 0 85 chr13 30644350 30644551 -89100347 + L2 LINE L2 3130 3313 0 2203 183 36 21 chr13 30645741 30646271 -89098627 - MER74A LTR ERVL -13 545 8 181 314 78 0 chr13 30646352 30646403 -89098495 + L2 LINE L2 3210 3264 -8 2488 66 0 3 chr13 30646602 30646906 -89097992 + AluY SINE Alu 1 303 -8 936 100 15 0 chr13 30646908 30647038 -89097860 + AluY SINE Alu 170 301 -10 261 0 0 0 chr13 30647038 30647067 -89097831 + (CA)n Simple_repeat Simple_repeat 2 30 0 262 229 16 0 chr13 30648388 30648449 -89096449 + L2 LINE L2 3244 3305 -8 2208 109 0 10 chr13 30649809 30650112 -89094786 + AluSx SINE Alu 1 300 -12 590 274 50 11 chr13 30650307 30650486 -89094412 - MIR SINE MIR -71 191 6 219 218 51 13 chr13 30652778 30652856 -89092042 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr13 30653678 30653699 -89091199 + AT_rich Low_complexity Low_complexity 1 21 0 201 350 0 0 chr13 30654134 30654194 -89090704 + CT-rich Low_complexity Low_complexity 2 61 0 405 0 0 0 chr13 30656484 30656529 -89088369 + (TG)n Simple_repeat Simple_repeat 2 46 0 4826 48 0 3 chr13 30657249 30657870 -89087028 + L1PA6 LINE L1 5414 6032 -122 209 284 15 30 chr13 30658160 30658227 -89086671 + L2 LINE L2 3184 3249 -23 * 459 242 58 0 chr13 30658218 30658338 -89086560 + MIR SINE MIR 115 241 -21 2247 95 0 7 chr13 30658438 30658734 -89086164 - AluSg SINE Alu -1 309 16 315 0 0 0 chr13 30659359 30659394 -89085504 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 31 0 0 chr13 30660185 30660217 -89084681 + AT_rich Low_complexity Low_complexity 1 32 0 360 0 0 0 chr13 30661054 30661094 -89083804 + (GA)n Simple_repeat Simple_repeat 1 40 0 362 254 34 72 chr13 30661931 30661976 -89082922 - MER112 DNA MER1_type -32 228 183 1962 154 7 0 chr13 30661976 30662274 -89082624 - AluSx SINE Alu -12 300 1 362 254 34 72 chr13 30662274 30662437 -89082461 - MER112 DNA MER1_type -77 183 28 589 225 305 0 chr13 30663123 30663310 -89081588 + MIR SINE MIR 19 262 0 239 265 265 8 chr13 30663327 30663444 -89081454 - L2 LINE L2 -1 3271 3125 2196 150 54 2 chr13 30664127 30664533 -89080365 - MSTB1 LTR MaLR 0 432 6 183 167 0 0 chr13 30665846 30665888 -89079010 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 25 31 0 0 chr13 30667797 30667829 -89077069 + AT_rich Low_complexity Low_complexity 1 32 0 324 0 0 0 chr13 30669222 30669258 -89075640 + (TG)n Simple_repeat Simple_repeat 2 37 0 253 303 138 11 chr13 30670233 30670421 -89074477 - MIR SINE MIR -4 258 47 2292 111 3 0 chr13 30671264 30671561 -89073337 - AluSq SINE Alu -15 298 1 25 0 0 0 chr13 30672171 30672196 -89072702 + AT_rich Low_complexity Low_complexity 1 25 0 1043 195 70 3 chr13 30673312 30673492 -89071406 - MER33 DNA MER1_type -2272 313 106 1807 141 57 34 chr13 30673492 30673790 -89071108 + AluSg SINE Alu 1 305 -5 1043 195 70 3 chr13 30673790 30673896 -89071002 - MER33 DNA MER1_type -2479 106 8 464 246 291 0 chr13 30673911 30674155 -89070743 - MER102a DNA MER1_type -15 315 1 240 271 34 0 chr13 30674461 30674520 -89070378 + L2 LINE L2 3156 3216 -56 3877 141 22 6 chr13 30674561 30675233 -89069665 + L1MB3 LINE L1 5499 6181 -2 538 268 69 57 chr13 30676227 30676522 -89068376 + L1ME4a LINE L1 4957 5268 -910 2119 111 26 61 chr13 30676522 30676829 -89068069 + THE1B LTR MaLR 1 294 -70 2190 87 17 7 chr13 30676829 30677127 -89067771 + AluSg SINE Alu 3 303 -7 2119 111 26 61 chr13 30677127 30677196 -89067702 + THE1B LTR MaLR 294 364 0 538 268 69 57 chr13 30677196 30677360 -89067538 + L1ME4a LINE L1 5268 5429 -749 977 284 53 26 chr13 30677452 30678018 -89066880 + L1ME4a LINE L1 5540 6120 -1 189 278 42 0 chr13 30678066 30678138 -89066760 + L2 LINE L2 2357 2431 -883 252 0 0 0 chr13 30678457 30678485 -89066413 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 323 308 117 8 chr13 30678485 30678605 -89066293 - L2 LINE L2 -13 3259 3127 541 292 36 18 chr13 30678854 30679022 -89065876 - MIR SINE MIR -17 245 75 239 288 72 65 chr13 30679028 30679181 -89065717 + L2 LINE L2 3159 3312 -1 459 305 8 0 chr13 30680185 30680303 -89064595 - MIR SINE MIR -127 135 17 220 180 33 16 chr13 30681111 30681172 -89063726 + CT-rich Low_complexity Low_complexity 2 63 0 2074 143 0 0 chr13 30682827 30683113 -89061785 - AluSx SINE Alu -26 286 1 1875 122 31 60 chr13 30683141 30683207 -89061691 - MER2 DNA MER2_type 0 344 278 774 105 0 0 chr13 30683207 30683321 -89061577 + (TA)n Simple_repeat Simple_repeat 2 115 0 2442 83 0 3 chr13 30683321 30683621 -89061277 - AluY SINE Alu -12 299 1 1875 122 31 60 chr13 30683621 30683906 -89060992 - MER2 DNA MER2_type -64 280 2 267 203 36 65 chr13 30684053 30684106 -89060792 - MER112 DNA MER1_type -61 199 146 2133 118 0 14 chr13 30684106 30684402 -89060496 + AluSx SINE Alu 1 292 -20 267 203 36 65 chr13 30684402 30684486 -89060412 - MER112 DNA MER1_type -114 146 66 216 0 0 0 chr13 30685084 30685108 -89059790 + (T)n Simple_repeat Simple_repeat 1 24 0 256 294 118 0 chr13 30685865 30685967 -89058931 + MIR SINE MIR 30 143 -65 2408 82 0 0 chr13 30686152 30686457 -89058441 + AluY SINE Alu 1 305 -6 28 0 0 0 chr13 30687142 30687170 -89057728 + AT_rich Low_complexity Low_complexity 1 28 0 2257 103 10 0 chr13 30687707 30687998 -89056900 + AluSg SINE Alu 1 294 -16 238 265 44 0 chr13 30688297 30688365 -89056533 - L2 LINE L2 0 3313 3243 387 308 96 58 chr13 30689388 30689596 -89055302 + MIR SINE MIR 46 261 -1 1318 170 19 8 chr13 30690617 30690882 -89054016 - L1MA4 LINE L1 -4 6296 6029 1852 101 0 41 chr13 30690969 30691236 -89053662 - AluSx SINE Alu -56 256 1 1867 168 166 9 chr13 30691375 30691810 -89053088 - MLT1D LTR MaLR -2 503 1 695 304 32 12 chr13 30692878 30693136 -89051762 - MIR SINE MIR 0 262 2 568 233 134 12 chr13 30693202 30693374 -89051524 - MIR SINE MIR -51 211 19 205 303 90 66 chr13 30693445 30693567 -89051331 - L2 LINE L2 -38 3234 3110 2302 114 0 0 chr13 30693750 30694058 -89050840 - AluSx SINE Alu -4 308 1 1149 183 50 4 chr13 30694548 30694789 -89050109 - MLT1D LTR MaLR 0 505 254 251 308 13 0 chr13 30696328 30696406 -89048492 + MER117 DNA MER1_type 119 197 0 370 286 137 44 chr13 30696454 30696681 -89048217 + MIR SINE MIR 3 250 -12 24 77 0 0 chr13 30698344 30698396 -89046502 + AT_rich Low_complexity Low_complexity 1 52 0 352 292 56 28 chr13 30698744 30698888 -89046010 - MIR3 SINE MIR -11 197 50 324 346 46 8 chr13 30698982 30699112 -89045786 + MIR SINE MIR 10 144 -118 875 151 50 0 chr13 30699306 30699473 -89045425 + FRAM SINE Alu 1 174 0 1729 298 89 66 chr13 30700646 30701701 -89043197 + L2 LINE L2 1925 3063 -250 259 71 24 0 chr13 30701701 30701743 -89043155 + MADE1 DNA Mariner 1 43 -37 1729 298 89 66 chr13 30701743 30702000 -89042898 + L2 LINE L2 3063 3313 0 1687 186 25 0 chr13 30704502 30704787 -89040111 + AluJo SINE Alu 2 293 -19 347 256 113 77 chr13 30705601 30705875 -89039023 - L1ME4a LINE L1 -24 6097 5814 381 288 8 32 chr13 30705879 30706004 -89038894 + MER5A DNA MER1_type 25 146 -43 234 191 0 0 chr13 30706344 30706391 -89038507 + CT-rich Low_complexity Low_complexity 3 49 0 633 330 84 34 chr13 30707078 30707709 -89037189 - L2 LINE L2 -30 3242 2589 213 259 0 19 chr13 30707840 30707894 -89037004 - L2 LINE L2 -92 3221 3169 866 115 54 11 chr13 30707915 30708182 -89036716 + L1MB3 LINE L1 5706 6183 0 559 297 136 25 chr13 30708295 30708802 -89036096 - L2 LINE L2 -160 3153 2593 226 315 14 0 chr13 30708940 30709013 -89035885 + tRNA-Glu-GAG tRNA tRNA 2 75 0 248 252 185 17 chr13 30709040 30709159 -89035739 + MIR SINE MIR 16 154 -108 773 267 142 44 chr13 30709480 30710044 -89034854 + L1M4 LINE L1 4371 4879 -1267 225 0 0 0 chr13 30710044 30710069 -89034829 + (TG)n Simple_repeat Simple_repeat 2 26 0 773 267 142 44 chr13 30710069 30710129 -89034769 + L1M4 LINE L1 4879 4932 -1214 4727 150 41 6 chr13 30710129 30711001 -89033897 - MER4D LTR ERV1 0 903 1 773 267 142 44 chr13 30711001 30711258 -89033640 + L1M4 LINE L1 4932 5339 -807 750 184 0 43 chr13 30711933 30712096 -89032802 - L2 LINE L2 0 3313 3158 269 244 278 0 chr13 30712107 30712197 -89032701 + MER5A DNA MER1_type 73 187 -2 317 317 48 21 chr13 30712882 30713027 -89031871 + L2 LINE L2 3155 3303 -10 25 0 0 0 chr13 30714785 30714810 -89030088 + AT_rich Low_complexity Low_complexity 1 25 0 289 274 186 0 chr13 30715131 30715233 -89029665 - L2 LINE L2 -5 3267 3147 1921 140 10 19 chr13 30715320 30715634 -89029264 - AluJb SINE Alu -1 311 1 324 287 126 90 chr13 30715658 30715743 -89029155 + L2 LINE L2 1993 2073 -1241 2307 99 6 6 chr13 30715743 30716055 -89028843 - AluSx SINE Alu 0 312 1 324 287 126 90 chr13 30716055 30716627 -89028271 + L2 LINE L2 2073 2674 -640 196 238 0 0 chr13 30716941 30716983 -89027915 - L2 LINE L2 -5 3308 3267 633 272 52 49 chr13 30717172 30717477 -89027421 + LTR16C LTR ERVL 186 491 0 376 256 45 75 chr13 30717705 30717838 -89027060 - L1M LINE L1 -700 5421 5293 425 316 67 27 chr13 30717896 30718121 -89026777 - L1M4 LINE L1 -859 5287 5054 205 200 0 22 chr13 30718289 30718334 -89026564 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 1715 194 43 130 chr13 30718352 30719121 -89025777 - L1MC4 LINE L1 -7 8035 7334 323 294 123 48 chr13 30719221 30719514 -89025384 - L1M4 LINE L1 -1635 4511 4197 333 273 11 57 chr13 30719550 30719726 -89025172 - L1M4 LINE L1 -2391 3755 3588 300 151 0 19 chr13 30719931 30719984 -89024914 + L1MC4 LINE L1 6652 6703 -1339 2242 82 7 7 chr13 30720103 30720397 -89024501 - AluSx SINE Alu -18 294 1 303 356 88 25 chr13 30720633 30720793 -89024105 - MIR3 SINE MIR -4 204 35 233 328 0 0 chr13 30721558 30721619 -89023279 + (CA)n Simple_repeat Simple_repeat 2 62 0 638 287 0 92 chr13 30721871 30721994 -89022904 - MIR SINE MIR -6 256 168 2514 64 0 6 chr13 30721994 30722307 -89022591 - AluY SINE Alu 0 311 1 638 287 0 92 chr13 30722307 30722444 -89022454 - MIR SINE MIR -94 168 20 242 200 0 0 chr13 30724406 30724446 -89020452 - MIR SINE MIR -5 257 218 383 326 154 40 chr13 30724889 30725370 -89019528 - L2 LINE L2 -556 2758 2223 240 111 0 0 chr13 30725484 30725520 -89019378 + (TG)n Simple_repeat Simple_repeat 2 37 0 1701 145 24 28 chr13 30726001 30726291 -89018607 - AluJo SINE Alu -22 290 2 206 61 0 30 chr13 30726342 30726375 -89018523 + (TG)n Simple_repeat Simple_repeat 2 33 0 393 221 21 48 chr13 30727474 30727619 -89017279 + MER103 DNA DNA 1 141 -25 2079 111 11 0 chr13 30727693 30727972 -89016926 + AluSx SINE Alu 1 282 -30 528 258 40 69 chr13 30728090 30728365 -89016533 + Charlie8 DNA MER1_type 38 1391 -1026 345 281 29 7 chr13 30728471 30728610 -89016288 + L1ME4a LINE L1 5974 6115 -6 30 27 0 0 chr13 30728923 30728960 -89015938 + AT_rich Low_complexity Low_complexity 1 37 0 327 256 135 8 chr13 30729525 30729658 -89015240 + MIR SINE MIR 98 247 -15 204 373 112 26 chr13 30730266 30730499 -89014399 - L3b LINE CR1 -24 1559 1307 21 0 0 0 chr13 30730738 30730759 -89014139 + AT_rich Low_complexity Low_complexity 1 21 0 1848 154 0 13 chr13 30730764 30731063 -89013835 + AluJo SINE Alu 1 295 -17 282 136 76 0 chr13 30731135 30731201 -89013697 - L1MA10 LINE L1 -7 6327 6257 4308 211 95 18 chr13 30731283 30732446 -89012452 - L1ME1 LINE L1 -162 6004 4633 2090 117 20 3 chr13 30732446 30732745 -89012153 - AluSx SINE Alu -4 308 5 4308 211 95 18 chr13 30732745 30733487 -89011411 - L1ME1 LINE L1 -1533 4633 3950 307 361 191 24 chr13 30733539 30733957 -89010941 - L2 LINE L2 -630 2684 2197 227 231 0 0 chr13 30735052 30735091 -89009807 + L2 LINE L2 3216 3254 -18 291 345 60 0 chr13 30735131 30735299 -89009599 - L2 LINE L2 -1220 2094 1917 698 164 78 0 chr13 30735757 30735873 -89009025 + AluJb SINE Alu 1 125 -187 1962 135 0 7 chr13 30736114 30736403 -89008495 + AluJb SINE Alu 1 287 -25 22 0 0 0 chr13 30736452 30736474 -89008424 + AT_rich Low_complexity Low_complexity 1 22 0 346 278 0 0 chr13 30737447 30737544 -89007354 + MIR SINE MIR 166 262 0 207 244 0 0 chr13 30739591 30739636 -89005262 + (CGG)n Simple_repeat Simple_repeat 2 46 0 206 341 52 44 chr13 30741560 30741695 -89003203 + MIR3 SINE MIR 2 137 -71 245 359 70 23 chr13 30742057 30742185 -89002713 - MIR3 SINE MIR -71 137 4 656 329 51 57 chr13 30742431 30743029 -89001869 + L2 LINE L2 2636 3264 -8 296 269 103 0 chr13 30743589 30743667 -89001231 - L2 LINE L2 -2 3311 3226 181 310 17 0 chr13 30743698 30743756 -89001142 + L2 LINE L2 3214 3272 0 29 0 0 0 chr13 30744480 30744509 -89000389 + AT_rich Low_complexity Low_complexity 1 29 0 207 320 39 39 chr13 30744941 30745019 -88999879 + L2 LINE L2 3163 3240 -32 312 299 31 10 chr13 30745256 30745353 -88999545 + MIR SINE MIR 49 147 -115 39 38 0 0 chr13 30746094 30746147 -88998751 + AT_rich Low_complexity Low_complexity 1 53 0 180 0 0 0 chr13 30747137 30747157 -88997741 + (A)n Simple_repeat Simple_repeat 1 20 0 2292 90 10 0 chr13 30747923 30748223 -88996675 + AluSp SINE Alu 1 303 -10 1268 113 0 0 chr13 30748223 30748391 -88996507 + AluSg/x SINE Alu 138 305 -7 228 231 91 118 chr13 30749286 30749472 -88995426 - MER5A DNA MER1_type -2 187 7 2152 152 0 25 chr13 30749844 30750014 -88994884 - L1MA5 LINE L1 0 6300 6127 2393 102 0 0 chr13 30750014 30750319 -88994579 - AluSq SINE Alu -8 305 1 2152 152 0 25 chr13 30750319 30750550 -88994348 - L1MA5 LINE L1 -173 6127 5909 418 209 38 25 chr13 30751305 30751463 -88993435 + GA-rich Low_complexity Low_complexity 3 162 0 2042 132 0 3 chr13 30751738 30752052 -88992846 + AluSx SINE Alu 5 317 0 308 250 42 10 chr13 30753277 30753373 -88991525 - MIR3 SINE MIR 0 208 110 214 315 82 0 chr13 30753959 30754032 -88990866 - MIR SINE MIR -98 164 86 235 229 242 57 chr13 30755371 30755528 -88989370 - MER5A DNA MER1_type -3 186 1 27 0 0 0 chr13 30755941 30755968 -88988930 + AT_rich Low_complexity Low_complexity 1 27 0 210 329 16 121 chr13 30756872 30757121 -88987777 + L2 LINE L2 2963 3185 -87 230 81 27 0 chr13 30757123 30757160 -88987738 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 21 0 0 0 chr13 30757255 30757276 -88987622 + AT_rich Low_complexity Low_complexity 1 21 0 194 211 276 26 chr13 30758367 30758443 -88986455 + MIR SINE MIR 46 140 -68 1493 123 0 0 chr13 30758956 30759191 -88985707 - L1MA2 LINE L1 0 6304 6070 1749 188 7 7 chr13 30759882 30760185 -88984713 - AluJo SINE Alu -9 303 1 292 250 16 0 chr13 30760423 30760487 -88984411 - L2 LINE L2 0 3313 3249 1150 201 63 35 chr13 30760494 30761100 -88983798 - L1M4 LINE L1 -3594 2788 2171 * 1725 213 52 48 chr13 30761096 30761332 -88983566 - L1M4 LINE L1 -4569 1734 1501 2265 106 0 17 chr13 30761332 30761634 -88983264 - AluSg SINE Alu -13 297 1 1725 213 52 48 chr13 30761634 30762044 -88982854 - L1M4 LINE L1 -4802 1501 777 294 333 8 8 chr13 30762527 30762659 -88982239 - L1M4 LINE L1 -6009 304 173 393 262 284 0 chr13 30762986 30763127 -88981771 + MIR SINE MIR 76 256 -6 471 314 52 87 chr13 30764713 30765082 -88979816 + L2 LINE L2 2917 3272 0 457 360 0 0 chr13 30765144 30765308 -88979590 - MIR SINE MIR 0 262 99 21 0 0 0 chr13 30765578 30765599 -88979299 + AT_rich Low_complexity Low_complexity 1 21 0 469 202 0 83 chr13 30766325 30766434 -88978464 + L2 LINE L2 3168 3267 -5 450 264 101 8 chr13 30766440 30766569 -88978329 + MIR SINE MIR 8 148 -114 2224 95 7 3 chr13 30767528 30767823 -88977075 + AluSc SINE Alu 1 296 -13 24 32 0 0 chr13 30767974 30768005 -88976893 + AT_rich Low_complexity Low_complexity 1 31 0 7187 118 60 25 chr13 30768206 30768861 -88976037 + HSMAR2 DNA Mariner 1 632 -670 2341 112 0 0 chr13 30768861 30769173 -88975725 + AluSx SINE Alu 1 312 0 7187 118 60 25 chr13 30769173 30769774 -88975124 + HSMAR2 DNA Mariner 632 1301 -1 210 37 0 0 chr13 30769798 30769825 -88975073 + (TTTTTA)n Simple_repeat Simple_repeat 3 29 0 189 0 0 0 chr13 30769827 30769848 -88975050 + (TA)n Simple_repeat Simple_repeat 2 22 0 2434 89 0 6 chr13 30769851 30770164 -88974734 - AluY SINE Alu 0 311 1 587 302 47 50 chr13 30770195 30770496 -88974402 - L1MEd LINE L1 -5818 301 2 416 149 0 176 chr13 30770566 30770714 -88974184 - L1MA8 LINE L1 -4 6287 6166 2135 120 0 10 chr13 30770971 30771294 -88973604 + AluSx SINE Alu 1 312 0 353 319 24 30 chr13 30772367 30772536 -88972362 + MIR3 SINE MIR 20 187 -21 233 217 75 142 chr13 30772894 30773000 -88971898 - L2 LINE L2 0 3272 3174 477 335 170 26 chr13 30774014 30774438 -88970460 - L3 LINE CR1 -93 1484 1000 331 266 129 36 chr13 30774545 30774684 -88970214 - L2 LINE L2 -5 3267 3116 181 355 16 0 chr13 30774776 30774838 -88970060 - L2 LINE L2 0 3272 3210 303 365 213 12 chr13 30774850 30775272 -88969626 - L3 LINE CR1 -1046 531 25 414 317 104 0 chr13 30775522 30775724 -88969174 + L2 LINE L2 2562 2784 -530 361 242 106 148 chr13 30775849 30776086 -88968812 + L2 LINE L2 2939 3160 -112 1292 167 174 4 chr13 30776086 30776362 -88968536 - MER33 DNA MER1_type -1 323 1 361 242 106 148 chr13 30776362 30776455 -88968443 + L2 LINE L2 3160 3255 -17 313 143 45 62 chr13 30776839 30776891 -88968007 + (TA)n Simple_repeat Simple_repeat 1 52 -58 2653 90 11 8 chr13 30776891 30777245 -88967653 + THE1A LTR MaLR 1 355 0 12510 93 9 4 chr13 30777245 30777741 -88967157 + THE1A-int LTR MaLR 1 493 -1087 2077 112 7 3 chr13 30777741 30778044 -88966854 + AluSq SINE Alu 1 304 -9 12510 93 9 4 chr13 30778044 30779119 -88965779 + THE1A-int LTR MaLR 493 1580 0 2677 88 8 8 chr13 30779119 30779472 -88965426 + THE1A LTR MaLR 1 353 -2 313 143 45 62 chr13 30779472 30779529 -88965369 + (TA)n Simple_repeat Simple_repeat 49 110 0 186 43 0 0 chr13 30781503 30781526 -88963372 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2170 127 3 0 chr13 30781948 30782256 -88962642 - AluSq SINE Alu -4 309 1 4315 116 57 17 chr13 30782261 30782966 -88961932 - L1MA4 LINE L1 -5 6295 5563 233 247 123 41 chr13 30783157 30783230 -88961668 - L2 LINE L2 0 3272 3194 2180 125 3 3 chr13 30783342 30783647 -88961251 - AluSg SINE Alu -5 305 1 2205 170 22 3 chr13 30783683 30784041 -88960857 + MLT1A1 LTR MaLR 1 365 0 2346 88 0 7 chr13 30784068 30784374 -88960524 + AluY SINE Alu 5 308 -3 409 293 58 29 chr13 30785504 30785678 -88959220 - MIR SINE MIR -56 206 28 227 361 13 48 chr13 30785750 30785915 -88958983 + MIR SINE MIR 38 195 -67 3283 145 105 24 chr13 30785994 30786026 -88958872 - L1MB2 LINE L1 -1 6170 6142 1581 186 0 4 chr13 30786026 30786290 -88958608 - AluJb SINE Alu -49 263 1 3283 145 105 24 chr13 30786290 30786301 -88958597 - L1MB2 LINE L1 -29 6142 6133 2115 131 7 0 chr13 30786301 30786598 -88958300 - AluSx SINE Alu -13 299 1 3283 145 105 24 chr13 30786598 30787192 -88957706 - L1MB2 LINE L1 -38 6133 5473 189 0 0 0 chr13 30787192 30787213 -88957685 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3283 145 105 24 chr13 30787213 30787240 -88957658 - L1MB2 LINE L1 -698 5473 5450 216 0 0 0 chr13 30787337 30787361 -88957537 + (TG)n Simple_repeat Simple_repeat 2 25 0 1994 133 0 3 chr13 30787361 30787647 -88957251 - AluSx SINE Alu -27 285 1 648 154 4 0 chr13 30787887 30788007 -88956891 - LTR12 LTR ERV1 0 714 49 332 224 0 0 chr13 30788007 30788083 -88956815 - LTR30 LTR ERV1 -98 624 549 908 61 9 0 chr13 30788085 30788199 -88956699 - LTR12 LTR ERV1 -440 274 160 * 1292 109 18 138 chr13 30788169 30788490 -88956408 - LTR12 LTR ERV1 -475 239 1 1651 275 62 80 chr13 30788536 30788790 -88956108 - L1MEd LINE L1 -5011 1108 851 2293 104 0 10 chr13 30788790 30789099 -88955799 - AluSx SINE Alu -6 306 1 1651 275 62 80 chr13 30789099 30789971 -88954927 - L1MEd LINE L1 -5268 851 2 2378 100 0 0 chr13 30790756 30791066 -88953832 + AluSg SINE Alu 1 310 0 837 245 92 39 chr13 30791326 30791632 -88953266 - MLT1H LTR MaLR -227 322 1 191 103 26 0 chr13 30791716 30791755 -88953143 + (TA)n Simple_repeat Simple_repeat 1 40 0 198 191 0 0 chr13 30792054 30792096 -88952802 + (TG)n Simple_repeat Simple_repeat 2 43 0 2024 206 130 35 chr13 30792126 30792408 -88952490 - MLT1E2 LTR MaLR -4 622 368 1687 188 40 40 chr13 30792408 30792780 -88952118 - MLT1A2 LTR MaLR 0 374 3 2024 206 130 35 chr13 30792780 30793065 -88951833 - MLT1E2 LTR MaLR -258 368 1 386 38 0 19 chr13 30793086 30793139 -88951759 + (TCTCCC)n Simple_repeat Simple_repeat 1 52 0 7289 55 29 13 chr13 30793139 30794733 -88950165 + SVA Other Other 1 1384 -2 2408 96 0 0 chr13 30795781 30796082 -88948816 - AluSx SINE Alu -11 301 1 27 73 0 0 chr13 30796188 30796243 -88948655 + AT_rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr13 30796826 30796855 -88948043 + AT_rich Low_complexity Low_complexity 1 29 0 1623 58 10 0 chr13 30797002 30797210 -88947688 + L1P4 LINE L1 5569 5778 -383 2870 94 5 13 chr13 30797244 30797638 -88947260 + L1PA14 LINE L1 5769 6159 -2 268 261 54 27 chr13 30797638 30797743 -88947155 - MIR SINE MIR -134 128 21 1908 271 35 45 chr13 30799858 30800606 -88944292 - MER20B DNA MER1_type -6 777 38 360 267 154 31 chr13 30801929 30802124 -88942774 + MIR SINE MIR 36 254 -8 435 229 181 21 chr13 30802242 30802386 -88942512 + MIR SINE MIR 82 248 -14 346 338 49 29 chr13 30802423 30802627 -88942271 - MIR SINE MIR -48 214 7 1895 151 0 20 chr13 30802697 30803018 -88941880 + AluJo SINE Alu 1 312 0 22 0 0 0 chr13 30804210 30804232 -88940666 + AT_rich Low_complexity Low_complexity 1 22 0 432 325 53 20 chr13 30804503 30804654 -88940244 - L3 LINE CR1 -3 1574 1419 201 208 19 19 chr13 30804779 30804832 -88940066 - L3 LINE CR1 -160 1417 1365 1284 144 47 0 chr13 30804938 30805153 -88939745 - MLT1B LTR MaLR 0 390 166 892 128 0 0 chr13 30805153 30805302 -88939596 - AluSx SINE Alu 0 305 157 834 99 0 9 chr13 30805309 30805420 -88939478 - AluSx SINE Alu -202 110 1 1070 127 24 0 chr13 30805425 30805591 -88939307 - MLT1B LTR MaLR -220 170 1 202 326 78 39 chr13 30805683 30805812 -88939086 - L3 LINE CR1 -602 975 842 448 214 29 43 chr13 30805815 30805955 -88938943 - L2 LINE L2 -54 3259 3122 274 313 40 66 chr13 30806032 30806230 -88938668 - L3 LINE CR1 -757 820 628 315 0 0 0 chr13 30807167 30807202 -88937696 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1199 276 91 12 chr13 30807203 30807608 -88937290 - L2 LINE L2 -16 3297 2861 270 0 0 0 chr13 30807774 30807804 -88937094 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr13 30809134 30809156 -88935742 + AT_rich Low_complexity Low_complexity 1 22 0 597 323 143 25 chr13 30809225 30809618 -88935280 - L2 LINE L2 0 3272 2834 860 356 83 20 chr13 30809699 30810480 -88934418 - L2 LINE L2 -675 2639 1810 324 329 79 67 chr13 30810625 30810968 -88933930 - L2 LINE L2 -16 3256 2910 * 489 308 83 72 chr13 30810941 30811321 -88933577 - L2 LINE L2 -1175 2139 1750 2676 121 62 5 chr13 30811321 30811726 -88933172 - MSTA LTR MaLR 0 428 1 489 308 83 72 chr13 30811726 30811861 -88933037 - L2 LINE L2 -1564 1750 1618 363 73 0 0 chr13 30812562 30812617 -88932281 + (TG)n Simple_repeat Simple_repeat 1 110 0 363 73 0 0 chr13 30812617 30812672 -88932226 + (TG)n Simple_repeat Simple_repeat 2 56 0 240 329 133 7 chr13 30813020 30813163 -88931735 - MIR SINE MIR -6 256 96 3149 210 29 3 chr13 30813482 30814114 -88930784 - L1MB5 LINE L1 -8 6166 5519 598 250 43 67 chr13 30814116 30814324 -88930574 + MER112 DNA MER1_type 17 219 -41 1330 205 24 27 chr13 30814331 30814668 -88930230 + Charlie4a DNA MER1_type 168 503 -5 1327 168 58 70 chr13 30814676 30815004 -88929894 + MER33 DNA MER1_type 1 324 0 27 0 0 0 chr13 30815373 30815400 -88929498 + AT_rich Low_complexity Low_complexity 1 27 0 2359 94 0 0 chr13 30817625 30817923 -88926975 - AluSx SINE Alu -14 298 1 202 121 30 0 chr13 30818566 30818599 -88926299 + CT-rich Low_complexity Low_complexity 2 35 0 283 274 128 17 chr13 30818699 30818816 -88926082 - MIR SINE MIR -69 193 64 2188 113 36 0 chr13 30818866 30819168 -88925730 - AluSq SINE Alu 0 313 1 186 125 31 0 chr13 30819576 30819608 -88925290 + L2 LINE L2 2726 2758 -556 189 204 0 82 chr13 30820743 30820792 -88924106 - L2 LINE L2 0 3313 3269 380 228 0 219 chr13 30821027 30821255 -88923643 - MER91A DNA MER1_type 0 196 19 2324 116 0 0 chr13 30821439 30821750 -88923148 - AluSx SINE Alu -1 311 1 24 0 0 0 chr13 30821805 30821829 -88923069 + AT_rich Low_complexity Low_complexity 1 24 0 547 223 23 15 chr13 30821873 30822003 -88922895 + MIR SINE MIR 74 204 -58 21 0 0 0 chr13 30822767 30822788 -88922110 + AT_rich Low_complexity Low_complexity 1 21 0 2128 116 38 0 chr13 30823016 30823309 -88921589 + AluSx SINE Alu 1 304 -8 643 298 42 17 chr13 30823315 30823553 -88921345 - MIR SINE MIR -5 257 14 527 86 25 0 chr13 30825553 30825634 -88919264 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 21 0 0 0 chr13 30826387 30826408 -88918490 + AT_rich Low_complexity Low_complexity 1 21 0 422 131 179 0 chr13 30827225 30827309 -88917589 - L2 LINE L2 -4 3268 3170 565 233 164 16 chr13 30828504 30828693 -88916205 + MIR SINE MIR 36 252 -10 384 276 73 0 chr13 30830148 30830271 -88914627 + MER94 DNA DNA 2 133 -1 200 163 0 20 chr13 30830557 30830606 -88914292 + CT-rich Low_complexity Low_complexity 2 49 0 342 0 0 0 chr13 30830611 30830649 -88914249 + (CA)n Simple_repeat Simple_repeat 2 39 0 255 114 0 0 chr13 30833021 30833065 -88911833 + (TC)n Simple_repeat Simple_repeat 1 44 0 1898 96 4 0 chr13 30834860 30835110 -88909788 - AluSq SINE Alu -3 310 60 240 200 0 0 chr13 30835739 30835789 -88909109 + GA-rich Low_complexity Low_complexity 3 52 0 493 302 82 22 chr13 30836296 30836528 -88908370 - MLT1L LTR MaLR -362 253 8 2058 138 42 14 chr13 30836551 30836905 -88907993 - THE1B LTR MaLR 0 364 1 184 243 54 0 chr13 30837096 30837133 -88907765 - MIR SINE MIR -185 77 39 655 183 0 25 chr13 30837488 30837608 -88907290 + AluJb SINE Alu 1 117 -195 29 0 0 0 chr13 30837612 30837641 -88907257 + AT_rich Low_complexity Low_complexity 1 29 0 326 304 193 19 chr13 30837964 30838171 -88906727 - MIR SINE MIR 0 262 20 204 303 49 37 chr13 30838853 30839015 -88905883 + L2 LINE L2 2511 2674 -640 285 167 0 0 chr13 30840524 30840572 -88904326 + MIR SINE MIR 65 112 -150 207 293 101 20 chr13 30840696 30840795 -88904103 + MIR SINE MIR 156 262 0 2210 118 0 25 chr13 30841130 30841451 -88903447 - AluSq SINE Alu 0 313 1 255 313 73 10 chr13 30842497 30842593 -88902305 - L2 LINE L2 -18 3254 3153 1139 43 35 0 chr13 30843013 30843178 -88901720 - AluY SINE Alu 0 308 139 207 238 0 0 chr13 30845288 30845330 -88899568 - L2 LINE L2 -10 3303 3262 255 368 120 8 chr13 30845631 30845764 -88899134 + MIR SINE MIR 2 149 -113 1245 198 60 3 chr13 30846012 30846361 -88898537 - Charlie5 DNA MER1_type -10 2602 2234 532 194 11 80 chr13 30846370 30846414 -88898484 - MER3 DNA MER1_type 6 168 123 2215 102 3 0 chr13 30846414 30846708 -88898190 + AluSx SINE Alu 1 295 -17 532 194 11 80 chr13 30846708 30846838 -88898060 - MER3 DNA MER1_type -39 123 6 22 0 0 0 chr13 30846843 30846865 -88898033 + AT_rich Low_complexity Low_complexity 1 22 0 757 124 0 16 chr13 30847478 30847599 -88897299 + AluSg/x SINE Alu 189 307 -5 2386 86 0 6 chr13 30848174 30848487 -88896411 + AluY SINE Alu 1 311 0 1788 163 23 7 chr13 30848618 30848925 -88895973 - AluJo SINE Alu 0 312 1 332 319 44 15 chr13 30849029 30849164 -88895734 - MER5B DNA MER1_type 0 178 40 2363 98 0 0 chr13 30849493 30849790 -88895108 + AluSc SINE Alu 1 297 -12 2304 117 0 3 chr13 30850746 30851055 -88893843 - AluSx SINE Alu -4 308 1 2464 72 0 3 chr13 30851261 30851566 -88893332 + AluY SINE Alu 1 304 -7 29 60 0 0 chr13 30851723 30851773 -88893125 + AT_rich Low_complexity Low_complexity 1 50 0 389 274 97 0 chr13 30852519 30852643 -88892255 + MIR SINE MIR 78 213 -49 198 0 0 0 chr13 30853043 30853065 -88891833 + (A)n Simple_repeat Simple_repeat 1 22 0 924 165 58 0 chr13 30853133 30853321 -88891577 - L1PB4 LINE L1 -1 6155 5957 205 268 107 0 chr13 30856341 30856397 -88888501 - L2 LINE L2 0 3272 3211 267 119 45 30 chr13 30856488 30856555 -88888343 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 634 232 0 102 chr13 30857017 30857302 -88887596 + MER112 DNA MER1_type 4 259 -1 337 293 52 9 chr13 30857554 30857670 -88887228 - L2 LINE L2 -15 3257 3137 286 287 66 103 chr13 30857931 30858203 -88886695 + L2 LINE L2 3010 3271 -1 1956 141 7 3 chr13 30858902 30859193 -88885705 - AluSq SINE Alu -21 292 1 1751 179 3 14 chr13 30859200 30859491 -88885407 - AluJo SINE Alu -24 288 1 436 279 48 33 chr13 30859495 30859767 -88885131 - L1MC5 LINE L1 -168 7793 7518 342 278 106 61 chr13 30860540 30860720 -88884178 - L2 LINE L2 -10 3262 3075 218 355 47 0 chr13 30860748 30860855 -88884043 + L2 LINE L2 2926 3037 -235 321 311 149 19 chr13 30861244 30861405 -88883493 - MIR3 SINE MIR -11 197 16 587 193 155 0 chr13 30861537 30861698 -88883200 + MER5A DNA MER1_type 1 186 -3 2417 66 3 3 chr13 30862496 30862800 -88882098 - AluY SINE Alu -7 304 1 2206 137 7 29 chr13 30863129 30863304 -88881594 + L1MB1 LINE L1 5749 5926 -242 8795 60 6 1 chr13 30863304 30865233 -88879665 - L1PA6 LINE L1 -5 6149 4218 2206 137 7 29 chr13 30865233 30865465 -88879433 + L1MB1 LINE L1 5926 6147 -21 41 36 0 0 chr13 30865466 30865521 -88879377 + AT_rich Low_complexity Low_complexity 1 55 0 338 292 167 0 chr13 30865566 30865686 -88879212 + MIR SINE MIR 49 188 -74 491 294 23 55 chr13 30867050 30867112 -88877786 + L2 LINE L2 3103 3165 -148 267 114 0 0 chr13 30867112 30867156 -88877742 + (TG)n Simple_repeat Simple_repeat 1 44 0 491 294 23 55 chr13 30867156 30867311 -88877587 + L2 LINE L2 3165 3313 0 355 130 101 0 chr13 30868173 30868242 -88876656 + L1MB3 LINE L1 6106 6181 -2 201 263 26 13 chr13 30870633 30870709 -88874189 + GA-rich Low_complexity Low_complexity 5 81 0 685 259 142 13 chr13 30873879 30874111 -88870787 - MIR SINE MIR 0 262 1 1842 161 0 0 chr13 30874936 30875209 -88869689 - AluSx SINE Alu -39 273 1 180 125 0 0 chr13 30875806 30875838 -88869060 + (A)n Simple_repeat Simple_repeat 1 32 0 1214 294 91 47 chr13 30876208 30877707 -88867191 - L1MEd LINE L1 -812 1678 16 248 329 82 53 chr13 30877912 30878119 -88866779 + L2 LINE L2 2845 3057 -215 246 268 188 0 chr13 30878253 30878365 -88866533 - MER112 DNA MER1_type -97 163 31 266 269 67 42 chr13 30878411 30878458 -88866440 + L2 LINE L2 3151 3195 -77 273 98 0 0 chr13 30878458 30878499 -88866399 + (CA)n Simple_repeat Simple_repeat 2 42 0 266 269 67 42 chr13 30878499 30878570 -88866328 + L2 LINE L2 3195 3272 0 498 251 107 27 chr13 30879047 30879234 -88865664 + MIR SINE MIR 42 243 -19 221 232 111 61 chr13 30879864 30879963 -88864935 + MIR SINE MIR 41 144 -64 21 36 0 0 chr13 30881948 30881976 -88862922 + AT_rich Low_complexity Low_complexity 1 28 0 202 298 151 48 chr13 30882999 30883075 -88861823 - L2 LINE L2 -1168 2146 2079 1521 154 64 57 chr13 30883075 30883373 -88861525 + AluJb SINE Alu 5 304 -8 202 298 151 48 chr13 30883373 30883657 -88861241 - L2 LINE L2 -1235 2079 1826 2414 71 0 10 chr13 30883657 30883968 -88860930 + AluY SINE Alu 1 308 -3 202 298 151 48 chr13 30883968 30884130 -88860768 - L2 LINE L2 -1488 1826 1569 287 290 122 38 chr13 30885390 30885521 -88859377 - MIR SINE MIR -109 153 12 449 113 0 0 chr13 30885654 30885725 -88859173 + L1PB4 LINE L1 6072 6142 -14 1502 209 88 59 chr13 30886591 30887283 -88857615 - L1MC5 LINE L1 -49 7912 7201 6794 103 24 10 chr13 30887810 30888929 -88855969 - L1MA2 LINE L1 0 6304 5170 2225 93 13 0 chr13 30888929 30889230 -88855668 - AluSg SINE Alu -5 305 1 6794 103 24 10 chr13 30889230 30889395 -88855503 - L1MA2 LINE L1 -1134 5170 5009 525 186 11 33 chr13 30889512 30889695 -88855203 + CT-rich Low_complexity Low_complexity 1 179 0 210 282 0 56 chr13 30890003 30890074 -88854824 - L2 LINE L2 -202 3070 3004 2121 102 6 38 chr13 30890101 30890416 -88854482 + AluSx SINE Alu 4 308 -4 2254 104 7 3 chr13 30890946 30891254 -88853644 - AluSx SINE Alu -3 309 1 548 128 92 0 chr13 30891423 30891532 -88853366 + L1MB4 LINE L1 6061 6179 -1 21 0 0 0 chr13 30891533 30891554 -88853344 + AT_rich Low_complexity Low_complexity 1 21 0 233 259 0 35 chr13 30892167 30892225 -88852673 - L2 LINE L2 -253 3060 3005 195 129 0 0 chr13 30892847 30892878 -88852020 + (TA)n Simple_repeat Simple_repeat 1 31 0 276 111 0 0 chr13 30892925 30892970 -88851928 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr13 30893058 30893086 -88851812 + AT_rich Low_complexity Low_complexity 1 28 0 1792 117 93 0 chr13 30893686 30893972 -88850926 - AluSc SINE Alu 0 310 1 23 33 0 0 chr13 30894002 30894032 -88850866 + AT_rich Low_complexity Low_complexity 1 30 0 4579 143 31 21 chr13 30894098 30894259 -88850639 - L1MA7 LINE L1 -10 6281 6123 1539 224 64 0 chr13 30894259 30894602 -88850296 - MLT1A1 LTR MaLR 0 365 1 4579 143 31 21 chr13 30894602 30895302 -88849596 - L1MA7 LINE L1 -168 6123 5411 311 315 85 24 chr13 30895999 30896164 -88848734 - L2 LINE L2 -5 3308 3134 2355 38 0 14 chr13 30896973 30897266 -88847632 + L1PA4 LINE L1 5866 6154 -1 1631 176 24 10 chr13 30897277 30897566 -88847332 + AluJb SINE Alu 2 294 -18 319 279 12 23 chr13 30897807 30897893 -88847005 + MIR SINE MIR 8 92 -170 482 243 197 0 chr13 30897903 30898055 -88846843 + MER5A DNA MER1_type 8 189 0 2544 109 3 14 chr13 30898248 30898616 -88846282 + THE1B LTR MaLR 1 364 0 1130 203 40 27 chr13 30898704 30899029 -88845869 + MLT1A1 LTR MaLR 1 391 -37 209 222 22 0 chr13 30899292 30899337 -88845561 - MIR SINE MIR -10 252 207 23 0 0 0 chr13 30899638 30899661 -88845237 + AT_rich Low_complexity Low_complexity 1 23 0 194 66 26 79 chr13 30899661 30899737 -88845161 + (TTAAA)n Simple_repeat Simple_repeat 5 76 0 202 129 54 65 chr13 30899741 30899834 -88845064 + (TTATA)n Simple_repeat Simple_repeat 1 92 0 894 254 65 29 chr13 30900105 30900380 -88844518 - MLT1J LTR MaLR -191 320 36 2199 107 40 0 chr13 30900668 30900967 -88843931 + AluSx SINE Alu 1 311 -1 332 284 44 98 chr13 30901167 30901392 -88843506 - L2 LINE L2 -35 3237 3025 199 300 33 121 chr13 30901852 30902066 -88842832 - L2 LINE L2 -217 3055 2869 1590 137 109 52 chr13 30902066 30902469 -88842429 - LTR37A LTR ERV1 0 426 1 199 300 33 121 chr13 30902469 30902527 -88842371 - L2 LINE L2 -403 2869 2807 334 320 36 107 chr13 30902819 30903203 -88841695 - L2 LINE L2 -1 3271 2915 2110 145 0 25 chr13 30904799 30905117 -88839781 + AluSx SINE Alu 1 310 -2 533 230 157 6 chr13 30905890 30906068 -88838830 - MIR SINE MIR -11 251 47 675 172 96 13 chr13 30907786 30907943 -88836955 - L1MD3 LINE L1 0 7995 7826 448 167 33 0 chr13 30907959 30908049 -88836849 - MER21A LTR ERV1 -358 573 481 536 183 0 30 chr13 30908049 30908180 -88836718 - L1MC3 LINE L1 -161 7624 7498 330 238 86 19 chr13 30909471 30909731 -88835167 - L1ME4a LINE L1 -164 5957 5679 1066 253 70 24 chr13 30909770 30910269 -88834629 - L1ME4a LINE L1 -505 5616 4942 444 286 71 24 chr13 30911448 30911616 -88833282 + MIR3 SINE MIR 8 183 -25 26 30 0 0 chr13 30911824 30911857 -88833041 + AT_rich Low_complexity Low_complexity 1 33 0 889 116 52 0 chr13 30912197 30912352 -88832546 - L1MB7 LINE L1 -20 6164 6002 279 285 105 2 chr13 30913732 30913908 -88830990 - MIR SINE MIR -16 246 13 5388 110 9 4 chr13 30914062 30914252 -88830646 - L1PB1 LINE L1 0 6151 5964 2318 113 0 0 chr13 30914252 30914553 -88830345 - AluSg SINE Alu -9 301 1 5388 110 9 4 chr13 30914553 30915685 -88829213 - L1PB1 LINE L1 -187 5964 4841 4159 189 2 12 chr13 30915685 30915755 -88829143 + L1 LINE L1 3859 3928 -2218 2440 82 3 0 chr13 30915755 30916059 -88828839 + AluY SINE Alu 1 305 -6 4159 189 2 12 chr13 30916059 30916911 -88827987 + L1 LINE L1 3928 4772 -1374 2093 100 0 24 chr13 30917409 30917726 -88827172 - AluSx SINE Alu 0 310 1 21 0 0 0 chr13 30919402 30919423 -88825475 + AT_rich Low_complexity Low_complexity 1 21 0 2261 91 0 14 chr13 30921087 30921384 -88823514 + AluSc SINE Alu 3 295 -14 182 233 47 0 chr13 30921991 30922034 -88822864 + L2 LINE L2 3209 3253 -19 390 239 65 0 chr13 30922380 30922472 -88822426 - MER5A DNA MER1_type 0 189 92 1354 135 23 0 chr13 30922472 30922687 -88822211 - MLT1B LTR MaLR 0 390 171 266 128 0 0 chr13 30922696 30922743 -88822155 + MLT1B LTR MaLR 152 198 -192 588 208 16 0 chr13 30922804 30922929 -88821969 - MLT1B LTR MaLR -263 127 1 356 277 84 54 chr13 30923327 30923493 -88821405 - L1ME3A LINE L1 -8 6162 5992 1963 105 70 14 chr13 30923644 30923929 -88820969 - AluSx SINE Alu -10 302 2 345 24 0 0 chr13 30924037 30924079 -88820819 + (TG)n Simple_repeat Simple_repeat 2 43 0 2347 91 0 0 chr13 30924407 30924705 -88820193 - AluSq SINE Alu -15 298 1 3775 153 20 45 chr13 30926059 30926812 -88818086 + L1MB7 LINE L1 5443 6176 -8 577 261 65 16 chr13 30926821 30927005 -88817893 + MIR SINE MIR 28 220 -42 1930 147 6 16 chr13 30927354 30927668 -88817230 - AluJb SINE Alu -1 311 1 232 25 75 0 chr13 30931704 30931744 -88813154 + T-rich Low_complexity Low_complexity 2 44 0 28 0 0 0 chr13 30933521 30933549 -88811349 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr13 30933611 30933654 -88811244 + AT_rich Low_complexity Low_complexity 1 43 0 511 249 54 54 chr13 30934038 30934223 -88810675 - L2 LINE L2 -11 3302 3118 438 331 23 17 chr13 30935097 30935272 -88809626 - MER5A DNA MER1_type -13 176 1 635 222 211 31 chr13 30935820 30936014 -88808884 + MIR SINE MIR 12 240 -22 181 257 200 0 chr13 30936397 30936467 -88808431 - L2 LINE L2 -50 3263 3180 262 335 123 33 chr13 30936684 30936896 -88808002 - L2 LINE L2 -474 2840 2610 226 304 0 0 chr13 30937312 30937368 -88807530 + L2 LINE L2 3187 3242 -71 814 258 22 35 chr13 30937395 30937624 -88807274 - MIR SINE MIR -27 235 10 303 302 68 68 chr13 30937843 30938091 -88806807 + L1M4 LINE L1 4600 4847 -1299 320 348 129 11 chr13 30938708 30939064 -88805834 - L2 LINE L2 -456 2858 2461 2938 6 0 0 chr13 30939115 30939432 -88805466 - AluYb8 SINE Alu -1 317 1 2274 97 0 0 chr13 30939912 30940211 -88804687 - AluSg1 SINE Alu 0 309 11 352 300 81 49 chr13 30940218 30940441 -88804457 + L2 LINE L2 3027 3256 -16 209 324 56 28 chr13 30941696 30941804 -88803094 - MIR SINE MIR -80 182 72 269 235 59 0 chr13 30941985 30942053 -88802845 - MIR SINE MIR -7 255 184 354 305 66 13 chr13 30942199 30942350 -88802548 + MIR SINE MIR 53 211 -51 269 188 17 17 chr13 30942595 30942712 -88802186 + (TA)n Simple_repeat Simple_repeat 2 118 0 23 78 0 0 chr13 30942730 30942781 -88802117 + AT_rich Low_complexity Low_complexity 1 51 0 283 236 150 48 chr13 30944036 30944181 -88800717 + MIR SINE MIR 17 166 -67 2289 218 60 22 chr13 30945371 30947300 -88797598 + L1ME1 LINE L1 4125 6334 0 462 234 63 51 chr13 30947339 30947497 -88797401 - MIR SINE MIR -51 211 52 23 0 0 0 chr13 30947993 30948016 -88796882 + AT_rich Low_complexity Low_complexity 1 23 0 256 218 143 113 chr13 30948106 30948239 -88796659 + MIR SINE MIR 113 249 -13 2120 116 24 0 chr13 30949913 30950205 -88794693 + AluSp SINE Alu 1 299 -14 26 64 0 0 chr13 30950386 30950433 -88794465 + AT_rich Low_complexity Low_complexity 1 47 0 239 337 65 0 chr13 30950655 30950747 -88794151 - L2 LINE L2 -12 3301 3204 2196 108 14 0 chr13 30952221 30952517 -88792381 + AluSx SINE Alu 2 301 -11 225 0 0 0 chr13 30952536 30952561 -88792337 + (A)n Simple_repeat Simple_repeat 1 25 0 201 74 0 0 chr13 30953045 30953072 -88791826 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 28 71 0 0 chr13 30953085 30953141 -88791757 + AT_rich Low_complexity Low_complexity 1 56 0 186 333 0 17 chr13 30954639 30954699 -88790199 + MIR SINE MIR 29 87 -121 21 0 0 0 chr13 30954991 30955012 -88789886 + AT_rich Low_complexity Low_complexity 1 21 0 317 213 64 78 chr13 30956964 30957105 -88787793 + MIR SINE MIR 65 203 -59 195 299 31 15 chr13 30958671 30958753 -88786145 - MIR SINE MIR -63 145 84 2763 138 29 7 chr13 30960806 30961249 -88783649 - MLT1C LTR MaLR 0 467 15 1331 182 55 115 chr13 30961604 30962098 -88782800 - MLT2C2 LTR ERVL 0 464 1 242 243 120 35 chr13 30962541 30962656 -88782242 + MIR SINE MIR 30 151 -89 832 278 47 20 chr13 30962954 30963209 -88781689 - MIR SINE MIR 0 262 1 894 156 66 71 chr13 30963531 30963742 -88781156 - MER20 DNA MER1_type -7 212 3 1207 180 43 0 chr13 30963892 30964125 -88780773 + L1MD3 LINE L1 7726 7968 -27 252 0 0 0 chr13 30964129 30964157 -88780741 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2062 127 0 0 chr13 30964159 30964442 -88780456 - AluSx SINE Alu -29 283 1 2146 120 10 3 chr13 30964907 30965215 -88779683 - AluSx SINE Alu -2 310 1 231 104 5 134 chr13 30965628 30965830 -88779068 + (ATGTG)n Simple_repeat Simple_repeat 1 176 0 285 306 0 39 chr13 30965873 30966053 -88778845 + (TATATG)n Simple_repeat Simple_repeat 5 177 0 701 251 29 6 chr13 30968113 30968288 -88776610 - MIR SINE MIR -30 232 54 221 275 30 8 chr13 30968509 30968640 -88776258 + (TA)n Simple_repeat Simple_repeat 2 135 0 217 338 125 6 chr13 30970469 30970629 -88774269 - MIR SINE MIR -21 241 63 1919 136 0 17 chr13 30970970 30971294 -88773604 + AluSx SINE Alu 1 319 0 203 342 83 64 chr13 30971537 30971803 -88773095 - L2 LINE L2 -4 3268 2998 335 389 15 0 chr13 30972313 30972444 -88772454 - L3 LINE CR1 -2 1575 1443 180 403 0 0 chr13 30972869 30972941 -88771957 - MIR SINE MIR -110 152 81 459 0 0 0 chr13 30973175 30973226 -88771672 + (TG)n Simple_repeat Simple_repeat 2 52 0 2402 99 0 0 chr13 30973906 30974218 -88770680 - AluSx SINE Alu 0 312 1 2372 97 0 3 chr13 30974564 30974873 -88770025 - AluSg SINE Alu -2 308 1 2050 106 68 3 chr13 30974996 30975289 -88769609 + AluSx SINE Alu 1 312 0 329 267 47 0 chr13 30975397 30975483 -88769415 + MIR SINE MIR 63 152 -110 193 361 54 39 chr13 30976202 30976332 -88768566 + L2 LINE L2 3133 3264 -8 210 37 0 0 chr13 30976346 30976373 -88768525 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2419 76 0 3 chr13 30977179 30977480 -88767418 + AluSc SINE Alu 1 300 -9 991 186 12 0 chr13 30977536 30977708 -88767190 + AluJo SINE Alu 1 174 -138 1136 160 0 17 chr13 30977712 30977893 -88767005 + FRAM SINE Alu 1 176 0 25 51 0 0 chr13 30979377 30979416 -88765482 + AT_rich Low_complexity Low_complexity 1 39 0 1038 263 64 21 chr13 30981510 30981808 -88763090 + L1ME LINE L1 2706 3037 -3109 7683 129 30 9 chr13 30981808 30983079 -88761819 - HSMAR2 DNA Mariner 0 1302 5 1038 263 64 21 chr13 30983079 30983298 -88761600 + L1ME LINE L1 3037 3245 -2901 2728 275 59 51 chr13 30983342 30985233 -88759665 + L1ME LINE L1 3510 5412 -750 2186 144 11 19 chr13 30985233 30985601 -88759297 - MLT1A1 LTR MaLR 0 365 1 2728 275 59 51 chr13 30985601 30985627 -88759271 + L1ME LINE L1 5412 5436 -726 638 219 72 57 chr13 30985611 30985890 -88759008 + L1ME3A LINE L1 5876 6158 -12 * 1346 37 0 75 chr13 30985949 30986185 -88758713 - AluY SINE Alu 0 331 110 2182 126 3 0 chr13 30986422 30986724 -88758174 - AluSx SINE Alu -9 303 1 2280 98 0 7 chr13 30987273 30987578 -88757320 - AluSx SINE Alu -9 303 1 228 122 0 0 chr13 30990251 30990292 -88754606 + (TG)n Simple_repeat Simple_repeat 2 42 0 348 317 174 22 chr13 30991146 30991370 -88753528 + MIR SINE MIR 2 259 -3 208 147 0 0 chr13 30991969 30992003 -88752895 + (TA)n Simple_repeat Simple_repeat 2 35 0 403 243 314 16 chr13 30992191 30992376 -88752522 + MIR SINE MIR 8 247 -15 284 234 81 9 chr13 30992524 30992635 -88752263 + L1ME LINE L1 5541 5659 -462 488 216 43 0 chr13 30992713 30992829 -88752069 - LTR16A LTR ERVL -6 444 324 286 229 14 0 chr13 30993306 30993376 -88751522 + MLT1F LTR MaLR 279 349 -193 2451 141 57 0 chr13 30993540 30993945 -88750953 - MSTC LTR MaLR 0 428 1 818 219 13 0 chr13 30994130 30994285 -88750613 + FRAM SINE Alu 2 158 -8 455 358 81 44 chr13 30994474 30995235 -88749663 + L2 LINE L2 2469 3271 -1 2130 118 7 7 chr13 30996345 30996641 -88748257 + AluSx SINE Alu 1 296 -16 2145 110 10 0 chr13 30997123 30997414 -88747484 + AluSx SINE Alu 1 294 -18 237 297 40 0 chr13 30997677 30997751 -88747147 - MIR SINE MIR -1 261 185 438 258 242 6 chr13 30997774 30997956 -88746942 + MIR SINE MIR 4 228 -34 500 301 15 8 chr13 30997978 30998111 -88746787 - MIR SINE MIR -106 156 23 205 362 135 9 chr13 30998153 30998382 -88746516 + L2 LINE L2 2827 3084 -188 347 341 89 15 chr13 30998463 30998598 -88746300 - L2 LINE L2 -1 3271 3127 2266 122 3 0 chr13 30998598 30998902 -88745996 + AluSx SINE Alu 1 305 -7 245 307 191 37 chr13 30999387 31000324 -88744574 - L2 LINE L2 -559 2755 1607 235 277 116 27 chr13 31000717 31000829 -88744069 - L2 LINE L2 -42 3271 3150 217 354 50 10 chr13 31001136 31001235 -88743663 + L2 LINE L2 3170 3272 0 28 0 0 0 chr13 31001392 31001420 -88743478 + AT_rich Low_complexity Low_complexity 1 28 0 717 267 27 43 chr13 31001996 31002254 -88742644 - MIR SINE MIR -5 257 4 604 178 8 0 chr13 31002894 31003012 -88741886 + L1MB3 LINE L1 6058 6176 -7 1910 127 42 3 chr13 31004865 31005149 -88739749 + AluSx SINE Alu 1 295 -17 1295 77 120 29 chr13 31008012 31008220 -88736678 - MER30 DNA MER1_type 0 230 4 184 318 47 35 chr13 31008222 31008307 -88736591 + L2 LINE L2 3187 3272 0 958 164 5 0 chr13 31008904 31009099 -88735799 + L1MA4 LINE L1 6099 6294 -6 1884 173 14 0 chr13 31009251 31009546 -88735352 - AluJb SINE Alu -13 299 1 21 36 0 0 chr13 31009570 31009598 -88735300 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 31010968 31010989 -88733909 + AT_rich Low_complexity Low_complexity 1 21 0 294 297 45 63 chr13 31011099 31011321 -88733577 - MIR SINE MIR -1 261 44 305 324 81 7 chr13 31011346 31011482 -88733416 + MIR SINE MIR 61 206 -56 228 89 71 0 chr13 31011499 31011555 -88733343 + T-rich Low_complexity Low_complexity 1 60 0 278 170 0 0 chr13 31011746 31011793 -88733105 - L2 LINE L2 -1 3312 3266 2249 107 3 0 chr13 31012075 31012373 -88732525 + AluSg SINE Alu 1 299 -11 2459 61 0 3 chr13 31012769 31013065 -88731833 - AluY SINE Alu -16 295 1 2270 34 0 4 chr13 31013153 31013416 -88731482 + AluY SINE Alu 1 262 -49 1939 166 3 0 chr13 31015181 31015489 -88729409 - AluSx SINE Alu -3 309 1 1256 223 80 136 chr13 31015519 31016090 -88728808 - L2 LINE L2 -1 3312 2700 492 163 10 20 chr13 31016090 31016188 -88728710 - AluS SINE Alu -216 97 1 1256 223 80 136 chr13 31016188 31016378 -88728520 - L2 LINE L2 -613 2700 2501 353 190 293 9 chr13 31016377 31016493 -88728405 + MIR SINE MIR 94 242 -20 * 226 259 0 0 chr13 31016505 31016559 -88728339 + (TTA)n Simple_repeat Simple_repeat 3 56 0 395 227 47 86 chr13 31016559 31016639 -88728259 - L2 LINE L2 -816 2498 2423 2165 101 0 17 chr13 31016639 31016935 -88727963 - AluSx SINE Alu -21 291 1 395 227 47 86 chr13 31016935 31016982 -88727916 - L2 LINE L2 -891 2423 2376 1520 156 25 83 chr13 31017176 31017412 -88727486 + AluJo SINE Alu 1 214 -98 2090 120 3 30 chr13 31017412 31017713 -88727185 - AluSx SINE Alu -19 293 1 1520 156 25 83 chr13 31017713 31017802 -88727096 + AluJo SINE Alu 214 307 -5 196 273 102 11 chr13 31018318 31018406 -88726492 + L2 LINE L2 3192 3287 -26 283 287 143 42 chr13 31018980 31019245 -88725653 - L2 LINE L2 -1076 2238 1947 23 33 0 0 chr13 31019837 31019867 -88725031 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 31020915 31020937 -88723961 + AT_rich Low_complexity Low_complexity 1 22 0 311 289 59 9 chr13 31020994 31021140 -88723758 - MIR SINE MIR -78 130 1 2431 70 3 0 chr13 31021428 31021726 -88723172 - AluY SINE Alu -12 299 1 212 323 0 16 chr13 31023535 31023597 -88721301 - L2 LINE L2 -5 3308 3248 21 71 0 0 chr13 31023600 31023642 -88721256 + AT_rich Low_complexity Low_complexity 1 42 0 2624 114 5 0 chr13 31023734 31024119 -88720779 - L1PA12 LINE L1 0 6168 5782 4497 81 34 0 chr13 31024117 31024760 -88720138 - L1PA13 LINE L1 -280 5883 5221 1297 258 66 10 chr13 31026097 31026489 -88718409 - MLT1J2 LTR MaLR -1 449 36 329 296 204 0 chr13 31027428 31027580 -88717318 - MIR SINE MIR 0 262 80 865 161 0 0 chr13 31027681 31027811 -88717087 + FLAM_A SINE Alu 4 133 0 2021 140 0 3 chr13 31027822 31028115 -88716783 + AluJb SINE Alu 9 300 -12 1929 143 10 3 chr13 31029018 31029311 -88715587 + AluSx SINE Alu 1 295 -17 228 35 0 0 chr13 31030014 31030043 -88714855 + (CA)n Simple_repeat Simple_repeat 2 30 0 2173 96 4 0 chr13 31032107 31032422 -88712476 - AluSc SINE Alu 0 316 1 885 144 8 0 chr13 31033561 31033693 -88711205 - FLAM_C SINE Alu 0 133 1 313 278 179 37 chr13 31033821 31033983 -88710915 - MIR SINE MIR -58 204 20 1584 194 41 3 chr13 31034965 31035284 -88709614 + L1MB4 LINE L1 5775 6105 -75 346 101 0 72 chr13 31035391 31035460 -88709438 + L1MB2 LINE L1 6108 6171 0 24 53 0 0 chr13 31036082 31036120 -88708778 + AT_rich Low_complexity Low_complexity 1 38 0 2040 131 0 0 chr13 31036200 31036507 -88708391 - AluSq SINE Alu 0 307 1 1218 259 139 48 chr13 31036666 31037327 -88707571 - L1ME4a LINE L1 -2 6119 5399 819 146 15 15 chr13 31037484 31037614 -88707284 + FLAM_C SINE Alu 2 131 -2 2337 73 14 0 chr13 31038632 31038919 -88705979 - AluSg SINE Alu -19 291 1 24 32 0 0 chr13 31038962 31038993 -88705905 + AT_rich Low_complexity Low_complexity 1 31 0 1562 161 7 36 chr13 31038996 31039270 -88705628 + AluJo SINE Alu 1 266 -46 207 195 0 0 chr13 31039271 31039312 -88705586 + (TAGA)n Simple_repeat Simple_repeat 3 43 0 374 319 30 0 chr13 31040046 31040181 -88704717 - L2 LINE L2 -238 3034 2896 282 337 99 29 chr13 31040207 31040450 -88704448 - L2 LINE L2 -512 2802 2543 25 0 0 0 chr13 31040941 31040966 -88703932 + AT_rich Low_complexity Low_complexity 1 25 0 268 255 94 101 chr13 31041787 31041936 -88702962 + L2 LINE L2 3125 3272 0 2020 87 0 0 chr13 31041959 31042213 -88702685 + L1PA7 LINE L1 5901 6154 0 522 294 165 39 chr13 31043362 31043726 -88701172 - L3 LINE CR1 -5 1572 1163 397 262 0 19 chr13 31044092 31044199 -88700699 - MLT1K LTR MaLR -162 426 322 184 154 19 96 chr13 31044441 31044493 -88700405 + L2 LINE L2 3216 3263 -9 242 306 104 0 chr13 31044874 31045008 -88699890 + L3 LINE CR1 1109 1256 -321 755 184 184 11 chr13 31045220 31045481 -88699417 - MER33 DNA MER1_type 0 324 19 23 54 0 0 chr13 31045863 31045900 -88698998 + AT_rich Low_complexity Low_complexity 1 37 0 258 32 0 0 chr13 31047598 31047629 -88697269 + (CA)n Simple_repeat Simple_repeat 2 32 0 1867 151 13 13 chr13 31049919 31050217 -88694681 + AluJb SINE Alu 1 298 -14 682 313 20 24 chr13 31050335 31050485 -88694413 + MIR SINE MIR 8 158 -104 2621 111 3 3 chr13 31050485 31050845 -88694053 + MER46B DNA MER2_type 1 235 -1 682 313 20 24 chr13 31050845 31050943 -88693955 + MIR SINE MIR 158 255 -7 2110 127 3 0 chr13 31052000 31052292 -88692606 + AluSx SINE Alu 3 295 -17 627 105 12 18 chr13 31054263 31054511 -88690387 + AluSx SINE Alu 1 300 -10 784 125 0 0 chr13 31054520 31054624 -88690274 + AluSg SINE Alu 2 105 -205 2237 82 3 7 chr13 31057397 31057688 -88687210 + AluSg1 SINE Alu 1 290 -19 30 0 0 0 chr13 31058058 31058088 -88686810 + AT_rich Low_complexity Low_complexity 1 30 0 396 336 15 0 chr13 31058709 31058846 -88686052 + MIR3 SINE MIR 54 192 -16 1926 138 0 0 chr13 31060373 31060648 -88684250 + AluSx SINE Alu 2 276 -36 206 185 0 37 chr13 31061359 31061413 -88683485 + T-rich Low_complexity Low_complexity 5 56 0 356 319 154 12 chr13 31061627 31061796 -88683102 - MER91A DNA MER1_type 0 196 4 180 0 0 0 chr13 31062157 31062177 -88682721 + (A)n Simple_repeat Simple_repeat 1 20 0 237 33 0 0 chr13 31062177 31062207 -88682691 + (TA)n Simple_repeat Simple_repeat 2 31 0 1045 117 48 0 chr13 31062360 31062505 -88682393 - AluSg/x SINE Alu -30 280 129 2230 93 3 17 chr13 31063076 31063377 -88681521 + AluSx SINE Alu 1 297 -15 2322 104 3 0 chr13 31063876 31064173 -88680725 - AluSq SINE Alu -15 298 1 363 284 158 77 chr13 31064279 31064589 -88680309 + L2 LINE L2 2937 3271 -1 376 261 17 25 chr13 31064891 31065010 -88679888 + MIR SINE MIR 44 161 -101 33 0 0 0 chr13 31065664 31065697 -88679201 + AT_rich Low_complexity Low_complexity 1 33 0 1009 206 0 0 chr13 31066179 31066344 -88678554 + FRAM SINE Alu 2 166 0 1877 101 0 45 chr13 31066388 31066674 -88678224 - AluSg SINE Alu 0 310 38 302 285 98 57 chr13 31066807 31066887 -88678011 + MIR SINE MIR 20 108 -154 2620 26 7 3 chr13 31066887 31067189 -88677709 - AluY SINE Alu -8 303 1 302 285 98 57 chr13 31067189 31067231 -88677667 + MIR SINE MIR 108 147 -115 578 135 79 0 chr13 31067551 31067640 -88677258 + MER46A DNA MER2_type 1 96 -140 * 634 116 12 1 chr13 31067630 31067736 -88677162 + Tigger4(Zombi) DNA MER2_type 130 2731 0 1028 130 76 5 chr13 31067904 31068089 -88676809 + L1MA8 LINE L1 6091 6288 -3 2632 43 10 0 chr13 31068093 31068396 -88676502 + AluY SINE Alu 1 306 -5 2443 58 0 32 chr13 31068762 31069071 -88675827 + AluY SINE Alu 1 299 -12 255 243 29 78 chr13 31070685 31070788 -88674110 - MIR3 SINE MIR -3 205 108 481 329 31 6 chr13 31070866 31071027 -88673871 + MIR SINE MIR 20 184 -78 280 247 38 35 chr13 31071050 31071240 -88673658 - MIR SINE MIR -6 256 14 410 295 147 69 chr13 31072688 31073308 -88671590 - L2 LINE L2 -2 3270 2584 181 305 253 0 chr13 31073780 31073875 -88671023 - MIR SINE MIR -118 144 26 323 291 82 18 chr13 31074878 31074988 -88669910 - MIR SINE MIR -44 218 102 2199 118 0 16 chr13 31076526 31076841 -88668057 + AluSg SINE Alu 1 310 0 386 238 161 70 chr13 31076872 31077171 -88667727 + Charlie8 DNA MER1_type 126 451 -1966 405 327 101 18 chr13 31077837 31078054 -88666844 - L3 LINE CR1 -715 862 628 2259 71 7 10 chr13 31080131 31080425 -88664473 + AluY SINE Alu 1 293 -18 2319 85 0 23 chr13 31080520 31080826 -88664072 + AluSg SINE Alu 3 301 -9 21 36 0 0 chr13 31082916 31082944 -88661954 + AT_rich Low_complexity Low_complexity 1 28 0 36 0 0 0 chr13 31083833 31083869 -88661029 + AT_rich Low_complexity Low_complexity 1 36 0 224 356 134 19 chr13 31084025 31084241 -88660657 - L2 LINE L2 -224 3048 2808 186 401 92 4 chr13 31084262 31084489 -88660409 - L2 LINE L2 -607 2707 2461 2105 123 36 3 chr13 31085035 31085336 -88659562 - AluSp SINE Alu -2 311 1 4502 115 65 56 chr13 31085336 31085636 -88659262 + Tigger1 DNA MER2_type 1552 1848 -570 2056 125 0 3 chr13 31085636 31085924 -88658974 - AluSx SINE Alu -25 287 1 4502 115 65 56 chr13 31085924 31086153 -88658745 + Tigger1 DNA MER2_type 1848 2073 -345 2043 118 4 4 chr13 31086153 31086474 -88658424 + AluSc SINE Alu 1 321 0 4502 115 65 56 chr13 31086474 31086801 -88658097 + Tigger1 DNA MER2_type 2073 2418 0 703 285 66 9 chr13 31087494 31087729 -88657169 - MIR SINE MIR -11 251 5 574 164 16 23 chr13 31088630 31088758 -88656140 + L1MB8 LINE L1 6051 6177 -1 216 158 0 0 chr13 31089529 31089567 -88655331 + T-rich Low_complexity Low_complexity 3 40 0 1678 254 134 66 chr13 31092085 31092653 -88652245 - L2 LINE L2 0 3313 2785 583 109 89 0 chr13 31092653 31092754 -88652144 + L1MB4 LINE L1 6070 6179 -1 1678 254 134 66 chr13 31092754 31093184 -88651714 - L2 LINE L2 -528 2785 2234 409 342 70 0 chr13 31093275 31093433 -88651465 + MER5B DNA MER1_type 5 173 -5 315 267 22 11 chr13 31094077 31094167 -88650731 + MER5B DNA MER1_type 1 91 -87 966 246 123 148 chr13 31094218 31095874 -88649024 + L2 LINE L2 582 2191 -1123 491 112 0 0 chr13 31095874 31095963 -88648935 - L1PB1 LINE L1 0 6151 6063 966 246 123 148 chr13 31095963 31096130 -88648768 + L2 LINE L2 2191 2361 -953 630 268 83 31 chr13 31096159 31096387 -88648511 - MIR SINE MIR 0 262 23 257 264 78 47 chr13 31096471 31096600 -88648298 + L2 LINE L2 2513 2645 -669 222 242 345 6 chr13 31096760 31096925 -88647973 + L2 LINE L2 2926 3146 -167 290 250 53 0 chr13 31097006 31097082 -88647816 + MIR SINE MIR 108 187 -75 409 176 9 120 chr13 31098130 31098238 -88646660 + MER20 DNA MER1_type 6 101 -118 2214 113 0 7 chr13 31098454 31098755 -88646143 - AluSx SINE Alu -13 299 1 2498 63 0 0 chr13 31098870 31099170 -88645728 - AluY SINE Alu -11 300 1 411 301 0 0 chr13 31099185 31099288 -88645610 - MIR SINE MIR -2 260 158 503 286 103 27 chr13 31099584 31100293 -88644605 + L1MEd LINE L1 764 1586 -4724 2359 107 3 0 chr13 31100293 31100602 -88644296 + AluSx SINE Alu 1 310 -2 503 286 103 27 chr13 31100602 31100688 -88644210 + L1MEd LINE L1 1586 1664 -4646 2209 125 10 0 chr13 31100870 31101174 -88643724 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr13 31101442 31101463 -88643435 + AT_rich Low_complexity Low_complexity 1 21 0 2221 105 0 0 chr13 31101463 31101748 -88643150 - AluSg SINE Alu -25 285 1 295 301 169 2 chr13 31101875 31102042 -88642856 + MIR SINE MIR 44 236 -26 2187 117 0 3 chr13 31102641 31102940 -88641958 - AluSq SINE Alu -15 298 1 189 369 18 27 chr13 31104553 31104664 -88640234 + L2 LINE L2 2636 2745 -569 3574 156 35 16 chr13 31105969 31106242 -88638656 + L1MA9 LINE L1 5556 5822 -490 2092 105 0 14 chr13 31106242 31106552 -88638346 + AluSx SINE Alu 1 306 0 3574 156 35 16 chr13 31106552 31106987 -88637911 + L1MA9 LINE L1 5822 6279 -33 2251 105 0 19 chr13 31106998 31107313 -88637585 - AluSx SINE Alu -3 309 1 314 324 221 5 chr13 31107626 31107830 -88637068 + MIR SINE MIR 15 262 0 2086 100 3 7 chr13 31108209 31108509 -88636389 + AluSp SINE Alu 1 299 -14 469 240 104 0 chr13 31109778 31109932 -88634966 - MER3 DNA MER1_type -21 188 19 1185 159 189 27 chr13 31110436 31110556 -88634342 - Charlie1a DNA MER1_type -1306 1455 1356 2219 111 0 3 chr13 31110556 31110862 -88634036 + AluSx SINE Alu 1 305 -7 1185 159 189 27 chr13 31110862 31111144 -88633754 - Charlie1a DNA MER1_type -1405 1356 988 2471 209 108 20 chr13 31111179 31111914 -88632984 - Charlie1a DNA MER1_type -590 865 67 2103 117 10 3 chr13 31112080 31112378 -88632520 - AluSg SINE Alu -10 300 1 25 51 0 0 chr13 31112433 31112472 -88632426 + AT_rich Low_complexity Low_complexity 1 39 0 429 332 91 5 chr13 31112976 31113163 -88631735 + MIR SINE MIR 2 204 -58 287 280 178 49 chr13 31113462 31113766 -88631132 - L2 LINE L2 -95 3218 2876 226 345 64 55 chr13 31113899 31114249 -88630649 + L2 LINE L2 2716 3069 -203 210 139 139 0 chr13 31114233 31114276 -88630622 - L2 LINE L2 -97 3216 3168 * 291 361 41 8 chr13 31114483 31114632 -88630266 + MER5B DNA MER1_type 7 153 -25 232 392 29 0 chr13 31114628 31114730 -88630168 - L2 LINE L2 -648 2666 2562 * 284 304 125 9 chr13 31114858 31114970 -88629928 - L2 LINE L2 -2 3270 3146 22 0 0 0 chr13 31115386 31115408 -88629490 + AT_rich Low_complexity Low_complexity 1 22 0 1778 147 26 3 chr13 31115610 31115923 -88628975 - L1MC2 LINE L1 -158 6186 5867 2639 104 106 2 chr13 31115923 31116356 -88628542 - MER9 LTR ERVK 0 511 34 2503 125 53 9 chr13 31116362 31116782 -88628116 - L1MC2 LINE L1 -471 5873 5432 2490 64 0 13 chr13 31116782 31117095 -88627803 - AluY SINE Alu -2 309 1 2503 125 53 9 chr13 31117095 31117106 -88627792 - L1MC2 LINE L1 -912 5432 5423 582 345 147 23 chr13 31117680 31118068 -88626830 - L2 LINE L2 0 3272 2837 1217 199 107 11 chr13 31118268 31118549 -88626349 - AluJo SINE Alu -2 310 3 181 250 67 17 chr13 31118617 31118677 -88626221 - L3b LINE CR1 -94 1489 1427 22 0 0 0 chr13 31118839 31118861 -88626037 + AT_rich Low_complexity Low_complexity 1 22 0 2512 56 13 0 chr13 31119180 31119482 -88625416 - AluY SINE Alu -5 306 1 1755 150 4 0 chr13 31120808 31121074 -88623824 + AluSq SINE Alu 1 267 -46 1936 93 4 12 chr13 31121074 31121330 -88623568 + AluY SINE Alu 41 296 -15 1234 153 4 75 chr13 31121411 31121665 -88623233 - AluJb SINE Alu -13 299 64 1815 135 4 0 chr13 31121875 31122141 -88622757 - AluSq SINE Alu -2 311 45 585 146 201 14 chr13 31122291 31122435 -88622463 + MER53 DNA DNA 10 180 -9 180 0 0 0 chr13 31122519 31122539 -88622359 + (TG)n Simple_repeat Simple_repeat 2 21 0 1300 84 20 141 chr13 31123347 31123644 -88621254 - Tigger7 DNA MER2_type -2 2489 2229 * 4419 128 42 75 chr13 31123643 31124510 -88620388 - Tigger7 DNA MER2_type -1648 839 2 1185 146 118 9 chr13 31124710 31124922 -88619976 - AluSg/x SINE Alu 0 312 78 898 181 0 0 chr13 31125079 31125228 -88619670 + AluJb SINE Alu 152 300 -12 208 207 11 58 chr13 31125445 31125532 -88619366 + (TATG)n Simple_repeat Simple_repeat 3 85 0 4695 72 3 6 chr13 31127261 31127885 -88617013 - L1PA10 LINE L1 -11 6157 5536 1690 210 7 0 chr13 31128039 31128344 -88616554 + AluJo SINE Alu 1 307 -5 2291 113 0 3 chr13 31128707 31129009 -88615889 + AluSx SINE Alu 1 301 -11 1657 186 14 3 chr13 31129526 31129822 -88615076 - AluJo SINE Alu -9 303 5 2330 4 0 8 chr13 31135270 31135528 -88609370 + AluYa5 SINE Alu 41 296 -15 268 234 240 82 chr13 31135534 31135636 -88609262 + MIR SINE MIR 59 144 -118 2225 100 10 3 chr13 31135636 31135935 -88608963 + AluSx SINE Alu 1 301 -11 268 234 240 82 chr13 31135935 31136003 -88608895 + MIR SINE MIR 144 256 -6 1891 115 44 90 chr13 31136136 31136410 -88608488 - MER7A DNA MER2_type -2692 346 94 2312 97 0 10 chr13 31136410 31136709 -88608189 + AluSx SINE Alu 1 296 -16 1891 115 44 90 chr13 31136709 31136799 -88608099 - MER7A DNA MER2_type -2944 94 1 441 123 92 0 chr13 31138355 31138420 -88606478 - AluS SINE Alu -236 76 6 600 140 9 0 chr13 31138426 31138540 -88606358 - Charlie1a DNA MER1_type -26 1429 1315 1942 184 58 9 chr13 31138542 31138977 -88605921 - Charlie1a DNA MER1_type -617 838 383 329 287 59 22 chr13 31138980 31139116 -88605782 - Charlie1a DNA MER1_type -1314 141 1 1908 115 77 18 chr13 31139229 31139567 -88605331 - MER46B DNA MER2_type -1 235 3 722 235 195 46 chr13 31139588 31140090 -88604808 - L1MC4a LINE L1 -1487 6321 5745 21 0 0 0 chr13 31140657 31140678 -88604220 + AT_rich Low_complexity Low_complexity 1 21 0 244 324 29 36 chr13 31140682 31140821 -88604077 - MIR SINE MIR -39 223 86 2913 257 164 38 chr13 31140829 31142565 -88602333 + HAL1 LINE L1 12 1966 -541 2134 130 20 0 chr13 31142587 31142886 -88602012 + AluSx SINE Alu 1 305 -7 900 256 146 35 chr13 31142886 31143200 -88601698 + HAL1 LINE L1 15 293 -2214 1895 129 71 0 chr13 31143200 31143480 -88601418 + AluSx SINE Alu 2 301 -11 900 256 146 35 chr13 31143480 31143715 -88601183 + HAL1 LINE L1 293 625 -1882 522 262 63 23 chr13 31143741 31143962 -88600936 + HAL1 LINE L1 743 972 -1535 297 245 142 75 chr13 31143964 31144115 -88600783 + HAL1 LINE L1 1945 2084 -423 2456 73 0 13 chr13 31144115 31144430 -88600468 + AluY SINE Alu 1 311 0 297 245 142 75 chr13 31144430 31144506 -88600392 + HAL1 LINE L1 2084 2153 -354 4835 102 21 0 chr13 31144506 31145180 -88599718 + LTR12 LTR ERV1 1 688 0 297 245 142 75 chr13 31145180 31145367 -88599531 + HAL1 LINE L1 2153 2388 -119 2140 116 0 0 chr13 31145432 31145748 -88599150 - AluY SINE Alu 0 311 1 488 279 145 11 chr13 31146694 31146963 -88597935 + L2 LINE L2 1552 1856 -1458 855 279 39 23 chr13 31146970 31147228 -88597670 + L2 LINE L2 2630 2891 -423 351 230 222 16 chr13 31147242 31147368 -88597530 + L2 LINE L2 3161 3312 -1 205 323 211 26 chr13 31147454 31148256 -88596642 - L2 LINE L2 -923 2391 1442 2267 82 20 7 chr13 31149228 31149357 -88595541 + AluSq SINE Alu 1 127 -186 225 0 0 0 chr13 31149357 31149382 -88595516 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2267 82 20 7 chr13 31149382 31149546 -88595352 + AluSq SINE Alu 127 298 -15 2171 81 0 84 chr13 31149696 31150018 -88594880 - AluSp SINE Alu -18 295 1 969 246 20 36 chr13 31150689 31150937 -88593961 - MIR SINE MIR -2 260 17 2354 99 0 0 chr13 31151842 31152146 -88592752 + AluSq SINE Alu 1 304 -9 1001 114 0 7 chr13 31152158 31152298 -88592600 + AluJb SINE Alu 1 139 -173 2109 125 0 3 chr13 31152299 31152588 -88592310 + AluSx SINE Alu 1 288 -24 2336 111 7 0 chr13 31152588 31152895 -88592003 + AluSx SINE Alu 1 309 -3 3587 263 159 20 chr13 31153480 31154018 -88590880 - L2 LINE L2 -8 3305 2843 2183 104 7 3 chr13 31154018 31154307 -88590591 - AluSx SINE Alu -22 290 1 3587 263 159 20 chr13 31154307 31155514 -88589384 - L2 LINE L2 -470 2843 1314 24 32 0 0 chr13 31155575 31155606 -88589292 + AT_rich Low_complexity Low_complexity 1 31 0 1898 155 7 23 chr13 31155669 31155979 -88588919 - AluJo SINE Alu -6 306 2 1192 264 193 29 chr13 31157888 31158728 -88586170 - HAL1 LINE L1 -1 2506 1529 295 161 0 0 chr13 31158766 31158822 -88586076 - Alu SINE Alu 0 302 247 754 187 0 0 chr13 31158827 31158950 -88585948 - FLAM_C SINE Alu -20 123 1 2304 108 10 0 chr13 31159019 31159326 -88585572 - AluSq SINE Alu -3 310 1 222 128 0 0 chr13 31159370 31159409 -88585489 + (T)n Simple_repeat Simple_repeat 1 39 0 648 221 30 30 chr13 31159441 31159676 -88585222 - HAL1 LINE L1 -1173 1334 1100 1061 258 112 46 chr13 31160037 31160188 -88584710 + L1MC5 LINE L1 6456 6596 -1365 2195 131 0 0 chr13 31160188 31160485 -88584413 + AluSx SINE Alu 1 297 -15 1061 258 112 46 chr13 31160485 31160804 -88584094 + L1MC5 LINE L1 6596 6893 -1068 2122 116 0 7 chr13 31160804 31161097 -88583801 + AluSx SINE Alu 6 296 -16 1061 258 112 46 chr13 31161097 31161170 -88583728 + L1MC5 LINE L1 6893 6960 -1001 1586 179 29 38 chr13 31161170 31161483 -88583415 + AluJb SINE Alu 3 312 0 1061 258 112 46 chr13 31161483 31161622 -88583276 + L1MC5 LINE L1 6960 7187 -774 2324 87 0 7 chr13 31161645 31161943 -88582955 - AluSg SINE Alu -1 309 14 381 230 115 71 chr13 31162010 31162236 -88582662 - HAL1 LINE L1 -1433 1074 839 2363 77 3 10 chr13 31162431 31162743 -88582155 - AluSg SINE Alu 0 310 1 524 302 18 6 chr13 31162894 31163063 -88581835 - HAL1 LINE L1 -2066 441 271 520 238 72 66 chr13 31163108 31163208 -88581690 + MIR SINE MIR 78 181 -81 2124 106 0 0 chr13 31163208 31163509 -88581389 - AluSx SINE Alu -11 301 1 520 238 72 66 chr13 31163509 31163589 -88581309 + MIR SINE MIR 181 259 -3 301 243 37 65 chr13 31163606 31163713 -88581185 - HAL1 LINE L1 -2302 205 102 1918 124 57 0 chr13 31164246 31164528 -88580370 - AluSq SINE Alu -15 298 1 6349 119 29 22 chr13 31165352 31165957 -88578941 - Tigger1 DNA MER2_type 0 2418 1818 2051 131 56 14 chr13 31165957 31166317 -88578581 - THE1C LTR MaLR 0 375 1 8389 137 27 75 chr13 31166317 31166632 -88578266 - THE1C-int LTR MaLR 0 1580 1251 1681 117 4 4 chr13 31166632 31166863 -88578035 - AluSg SINE Alu -16 294 64 2205 139 0 0 chr13 31166863 31167171 -88577727 + AluSg SINE Alu 2 310 0 8389 137 27 75 chr13 31167171 31168511 -88576387 - THE1C-int LTR MaLR -327 1253 4 1964 140 59 14 chr13 31168514 31168871 -88576027 - THE1C LTR MaLR 0 375 3 6349 119 29 22 chr13 31168871 31169195 -88575703 - Tigger1 DNA MER2_type -601 1817 1474 2428 74 3 0 chr13 31169195 31169494 -88575404 - AluSp SINE Alu -12 301 2 6349 119 29 22 chr13 31169494 31169629 -88575269 - Tigger1 DNA MER2_type -944 1474 1341 716 169 32 45 chr13 31169623 31169777 -88575121 - Tigger1 DNA MER2_type -2265 153 2 * 2063 139 7 3 chr13 31169876 31170178 -88574720 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr13 31170638 31170661 -88574237 + AT_rich Low_complexity Low_complexity 1 23 0 2257 98 7 0 chr13 31170945 31171242 -88573656 + AluSq SINE Alu 1 299 -14 210 321 191 24 chr13 31171818 31171986 -88572912 + MIR3 SINE MIR 10 205 -3 183 129 0 0 chr13 31172306 31172337 -88572561 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 617 265 33 38 chr13 31172473 31172684 -88572214 + MIR SINE MIR 34 243 -19 2340 105 0 0 chr13 31174169 31174474 -88570424 - AluY SINE Alu -6 305 1 5263 244 115 72 chr13 31174798 31175754 -88569144 - L2 LINE L2 -1 3312 2399 1169 53 0 0 chr13 31175754 31175886 -88569012 - AluY SINE Alu -179 132 1 5263 244 115 72 chr13 31175886 31176714 -88568184 - L2 LINE L2 -914 2399 1609 2211 78 38 0 chr13 31176714 31177007 -88567891 + AluY SINE Alu 1 304 -7 5263 244 115 72 chr13 31177007 31178087 -88566811 - L2 LINE L2 -1704 1609 154 247 91 0 0 chr13 31178106 31178150 -88566748 - L1MA1 LINE L1 0 6302 6259 1824 126 0 0 chr13 31179804 31180058 -88564840 + AluSx SINE Alu 44 297 -15 1788 169 36 3 chr13 31180466 31180786 -88564112 - MLT1C LTR MaLR 0 654 126 4087 175 49 54 chr13 31180786 31181745 -88563153 + LTR13 LTR ERVK 1 954 0 1788 169 36 3 chr13 31181745 31181759 -88563139 - MLT1C LTR MaLR -528 126 114 1863 158 3 3 chr13 31181759 31182056 -88562842 - AluSx SINE Alu -14 298 2 1428 118 102 12 chr13 31182060 31182305 -88562593 + MER47A DNA MER2_type 30 296 -70 2454 238 51 41 chr13 31182371 31183304 -88561594 - L1MDa LINE L1 -3830 2710 1769 320 163 0 0 chr13 31183312 31183361 -88561537 + MER47A DNA MER2_type 307 355 -11 242 234 0 0 chr13 31183365 31183412 -88561486 - MLT1C LTR MaLR -374 93 47 182 322 35 23 chr13 31183788 31183875 -88561023 + L2 LINE L2 2699 2786 -528 672 151 72 50 chr13 31183950 31184089 -88560809 + FLAM_C SINE Alu 2 143 0 490 286 118 0 chr13 31184504 31184682 -88560216 - MIR SINE MIR -61 201 3 753 261 207 14 chr13 31184859 31185212 -88559686 - LTR16A LTR ERVL -14 436 16 580 124 10 15 chr13 31186044 31186246 -88558652 + AluSx SINE Alu 2 299 -3 3845 224 82 39 chr13 31186253 31187398 -88557500 - L1MC4a LINE L1 0 7808 6615 2217 224 58 61 chr13 31187395 31188150 -88556748 - L1MC4a LINE L1 -1594 6214 5462 * 628 248 164 9 chr13 31189061 31189287 -88555611 - MIR SINE MIR 0 262 2 26 0 0 0 chr13 31189393 31189419 -88555479 + AT_rich Low_complexity Low_complexity 1 26 0 2190 125 0 6 chr13 31189601 31189912 -88554986 - AluSx SINE Alu 0 312 4 389 218 13 0 chr13 31190013 31190091 -88554807 + MER116 DNA Mariner 1 79 -1 707 163 70 52 chr13 31191082 31191139 -88553759 - MIR SINE MIR -48 214 159 1186 176 10 19 chr13 31191139 31191344 -88553554 - MER6B DNA MER2_type -3 207 5 707 163 70 52 chr13 31191344 31191458 -88553440 - MIR SINE MIR -103 159 40 937 134 0 8 chr13 31192660 31192794 -88552104 + FLAM_C SINE Alu 1 133 0 2192 120 0 3 chr13 31193428 31193727 -88551171 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 31194235 31194256 -88550642 + AT_rich Low_complexity Low_complexity 1 21 0 495 272 203 20 chr13 31195842 31196088 -88548810 - MARNA DNA Mariner -263 323 33 239 318 162 13 chr13 31197240 31197394 -88547504 - MER5A DNA MER1_type -7 182 6 2065 135 0 0 chr13 31198869 31199172 -88545726 + AluSx SINE Alu 1 303 -9 2553 48 3 26 chr13 31199530 31199843 -88545055 - AluY SINE Alu -5 306 1 2311 93 3 10 chr13 31200091 31200404 -88544494 - AluSq SINE Alu -2 311 1 294 322 128 13 chr13 31202952 31203101 -88541797 + L3 LINE CR1 353 518 -1059 226 364 127 9 chr13 31203135 31203245 -88541653 - L2 LINE L2 -11 3302 3180 558 313 28 36 chr13 31203505 31203754 -88541144 + L3 LINE CR1 1055 1301 -276 419 265 175 23 chr13 31203754 31204116 -88540782 - MLT1H LTR MaLR -90 459 1 302 267 114 9 chr13 31205506 31205611 -88539287 - L1MC5 LINE L1 -36 7925 7810 293 286 0 0 chr13 31205703 31205794 -88539104 - L1MC5 LINE L1 -396 7565 7475 534 281 67 30 chr13 31205818 31205976 -88538922 - L1MC4 LINE L1 0 8042 7868 2134 106 3 47 chr13 31205976 31206297 -88538601 + AluSx SINE Alu 1 307 -5 534 281 67 30 chr13 31206297 31206405 -88538493 - L1MC4 LINE L1 -174 7868 7766 23 0 0 0 chr13 31206523 31206546 -88538352 + AT_rich Low_complexity Low_complexity 1 23 0 2163 106 0 7 chr13 31206565 31206857 -88538041 - AluSx SINE Alu -22 290 1 26 0 0 0 chr13 31206867 31206893 -88538005 + AT_rich Low_complexity Low_complexity 1 26 0 737 278 66 28 chr13 31207002 31207322 -88537576 - L1MC4 LINE L1 -495 7547 7216 312 227 86 121 chr13 31207366 31207508 -88537390 - L1ME4a LINE L1 -89 6032 5887 2456 86 0 0 chr13 31207508 31207811 -88537087 - AluSx SINE Alu -9 303 1 312 227 86 121 chr13 31207811 31208007 -88536891 - L1ME4a LINE L1 -234 5887 5706 349 366 22 22 chr13 31208286 31208469 -88536429 - MIR SINE MIR -33 229 47 287 320 33 16 chr13 31208480 31208602 -88536296 - HAL1b LINE L1 -750 598 475 385 276 73 73 chr13 31208623 31208898 -88536000 - MLT1J LTR MaLR -1 510 236 22 0 0 0 chr13 31209016 31209038 -88535860 + AT_rich Low_complexity Low_complexity 1 22 0 578 281 29 29 chr13 31209498 31209708 -88535190 + L2 LINE L2 3104 3313 0 527 254 216 38 chr13 31209810 31210023 -88534875 - MIR SINE MIR -4 258 8 239 226 135 23 chr13 31210035 31210168 -88534730 - L1ME LINE L1 -375 5787 5640 592 252 7 7 chr13 31210255 31210390 -88534508 + L2 LINE L2 3179 3313 0 2227 90 0 0 chr13 31210465 31210744 -88534154 - AluSg SINE Alu -31 279 1 2841 67 22 3 chr13 31210845 31211201 -88533697 + THE1C LTR MaLR 3 365 -10 11437 98 41 7 chr13 31211201 31212727 -88532171 + THE1C-int LTR MaLR 1 1578 -2 2555 71 22 41 chr13 31212727 31212867 -88532031 + THE1C LTR MaLR 19 160 -215 2099 118 13 35 chr13 31212867 31213180 -88531718 - AluSx SINE Alu -6 306 1 2555 71 22 41 chr13 31213180 31213403 -88531495 + THE1C LTR MaLR 160 375 0 2417 87 0 6 chr13 31214293 31214604 -88530294 - AluSq SINE Alu -4 309 1 364 233 107 79 chr13 31214729 31214944 -88529954 - L2 LINE L2 -4 3309 3089 261 310 181 0 chr13 31215168 31215284 -88529614 + MIR SINE MIR 126 262 0 1665 170 24 40 chr13 31217172 31217548 -88527350 + L1MB4 LINE L1 5777 6146 -34 431 57 0 0 chr13 31218181 31218234 -88526664 - Alu SINE Alu -260 58 6 227 237 34 0 chr13 31218238 31218297 -88526601 - L1ME LINE L1 -454 5667 5607 392 190 110 0 chr13 31218646 31218746 -88526152 - L1ME4a LINE L1 -6 6115 6005 505 263 108 17 chr13 31219176 31219350 -88525548 - MIR SINE MIR -62 146 8 406 319 18 35 chr13 31219387 31219556 -88525342 - MIR3 SINE MIR -23 185 20 312 301 11 0 chr13 31219645 31219738 -88525160 - MIR3 SINE MIR -1 207 114 226 273 260 0 chr13 31220346 31220423 -88524475 - L2 LINE L2 -20 3293 3197 189 74 0 0 chr13 31221362 31221389 -88523509 + (CTGGGG)n Simple_repeat Simple_repeat 6 32 0 23 0 0 0 chr13 31221597 31221620 -88523278 + GC_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr13 31221620 31221645 -88523253 + (CTG)n Simple_repeat Simple_repeat 1 25 0 1268 169 115 17 chr13 31223131 31223214 -88521684 + MER33 DNA MER1_type 1 74 -2511 1931 158 0 3 chr13 31223214 31223517 -88521381 + AluJo SINE Alu 1 302 -10 1268 169 115 17 chr13 31223517 31223728 -88521170 + MER33 DNA MER1_type 74 324 0 238 325 78 12 chr13 31223931 31224097 -88520801 - L2 LINE L2 -1148 2166 1990 210 273 83 58 chr13 31224226 31224347 -88520551 + L2 LINE L2 3169 3292 -21 2345 78 3 0 chr13 31224421 31224736 -88520162 + AluSp SINE Alu 1 316 0 821 215 58 50 chr13 31225411 31225653 -88519245 - MER46C DNA MER2_type 0 338 95 1726 108 0 4 chr13 31225664 31225896 -88519002 - AluJb SINE Alu -81 231 1 835 117 105 146 chr13 31225935 31226182 -88518716 + L1MB3 LINE L1 5942 6178 -5 303 226 0 0 chr13 31226193 31226255 -88518643 - MER46C DNA MER2_type -274 64 3 2080 98 47 17 chr13 31226959 31227255 -88517643 + AluSx SINE Alu 1 305 -7 2239 101 9 22 chr13 31227255 31227572 -88517326 + AluSq SINE Alu 1 313 0 2062 110 3 67 chr13 31227678 31228006 -88516892 - AluSx SINE Alu -5 307 1 277 308 75 25 chr13 31228067 31228187 -88516711 - MIR SINE MIR -66 142 17 342 259 121 26 chr13 31228757 31228851 -88516047 + L2 LINE L2 3187 3295 -18 2217 110 0 0 chr13 31228851 31229142 -88515756 - AluSx SINE Alu -21 291 1 342 259 121 26 chr13 31229142 31229163 -88515735 + L2 LINE L2 3295 3313 0 28 29 0 0 chr13 31230018 31230053 -88514845 + AT_rich Low_complexity Low_complexity 1 35 0 2200 114 13 0 chr13 31230125 31230448 -88514450 + AluSx SINE Alu 10 336 0 2121 116 0 7 chr13 31230466 31230796 -88514102 - AluSx SINE Alu 0 328 1 1273 106 30 43 chr13 31231609 31231844 -88513054 - L1MA6 LINE L1 -7 6293 6062 1251 91 5 0 chr13 31231846 31232032 -88512866 + L1MA6 LINE L1 5791 5977 -323 1227 119 0 0 chr13 31232066 31232234 -88512664 + AluSp SINE Alu 137 304 -9 186 43 0 0 chr13 31232235 31232258 -88512640 + (CA)n Simple_repeat Simple_repeat 2 24 0 2226 105 0 40 chr13 31233345 31233668 -88511230 + AluSg SINE Alu 1 310 0 2171 101 21 0 chr13 31234089 31234375 -88510523 - AluSx SINE Alu -20 292 1 2100 125 0 16 chr13 31234464 31234767 -88510131 - AluSx SINE Alu -14 298 1 2321 88 0 10 chr13 31235019 31235354 -88509544 + AluSq SINE Alu 6 313 0 2160 38 27 0 chr13 31235366 31235493 -88509405 + AluY SINE Alu 1 123 -188 333 0 0 0 chr13 31235493 31235530 -88509368 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2160 38 27 0 chr13 31235530 31235665 -88509233 + AluY SINE Alu 123 270 -41 2150 117 7 7 chr13 31237857 31238166 -88506732 - AluSq SINE Alu -4 309 1 1853 139 3 55 chr13 31238342 31238567 -88506331 - MER7A DNA MER2_type -2712 326 91 1887 136 0 7 chr13 31238567 31238846 -88506052 + AluSx SINE Alu 1 277 -35 270 0 0 0 chr13 31238851 31238881 -88506017 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1853 139 3 55 chr13 31238881 31238994 -88505904 - MER7A DNA MER2_type -2951 87 2 392 215 102 96 chr13 31239188 31239365 -88505533 + MER20B DNA MER1_type 2 179 -604 716 261 84 31 chr13 31240393 31240619 -88504279 - MIR SINE MIR -23 239 2 621 299 33 9 chr13 31241017 31241231 -88503667 - L2 LINE L2 -745 2569 2351 282 282 0 14 chr13 31243248 31243319 -88501579 + MIR SINE MIR 193 262 0 375 275 153 14 chr13 31243550 31243837 -88501061 + L1M4 LINE L1 2518 2844 -3302 21 0 0 0 chr13 31243904 31243925 -88500973 + AT_rich Low_complexity Low_complexity 1 21 0 2471 64 0 0 chr13 31243929 31244224 -88500674 - AluY SINE Alu -16 295 1 1120 142 12 0 chr13 31244224 31244393 -88500505 - AluJb SINE Alu -6 306 136 195 115 77 0 chr13 31244395 31244447 -88500451 + CT-rich Low_complexity Low_complexity 5 60 0 276 30 0 0 chr13 31244470 31244503 -88500395 + (TC)n Simple_repeat Simple_repeat 2 34 0 726 134 18 0 chr13 31244503 31244615 -88500283 - AluJb SINE Alu -198 114 1 347 326 53 8 chr13 31244618 31244750 -88500148 + L1M4 LINE L1 2983 3120 -3026 734 184 0 37 chr13 31244751 31244887 -88500011 + FLAM_C SINE Alu 2 132 -1 457 242 91 18 chr13 31244929 31245094 -88499804 + L1M4 LINE L1 3219 3395 -2751 1458 158 83 32 chr13 31245149 31245427 -88499471 - AluJo SINE Alu -20 292 1 690 267 60 87 chr13 31245427 31245643 -88499255 + L1M4 LINE L1 3410 3630 -2516 2368 89 3 0 chr13 31245643 31245947 -88498951 - AluSp SINE Alu -8 305 1 690 267 60 87 chr13 31245947 31246463 -88498435 + L1M4 LINE L1 3630 4122 -2024 1955 127 14 7 chr13 31246563 31246855 -88498043 + AluSx SINE Alu 1 294 -18 3912 227 69 37 chr13 31246867 31247064 -88497834 + L1M4 LINE L1 2 191 -6351 904 202 12 17 chr13 31247064 31247237 -88497661 - FAM SINE Alu -3 172 1 3912 227 69 37 chr13 31247237 31248295 -88496603 + L1M4 LINE L1 191 1298 -5244 * 13599 166 30 45 chr13 31248294 31250441 -88494457 + L1MA4A LINE L1 1 2178 -4827 1990 148 0 10 chr13 31250441 31250746 -88494152 + AluSx SINE Alu 2 303 -9 210 105 0 0 chr13 31250753 31250791 -88494107 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 13599 166 30 45 chr13 31250791 31251621 -88493277 + L1MA4A LINE L1 2184 3025 -3980 2230 81 0 7 chr13 31251621 31251951 -88492947 - AluY SINE Alu 0 328 1 13599 166 30 45 chr13 31251951 31255202 -88489696 + L1MA4A LINE L1 3025 6130 -875 1880 154 3 3 chr13 31255202 31255488 -88489410 - AluJo SINE Alu -26 286 1 13599 166 30 45 chr13 31255488 31256331 -88488567 + L1MA4A LINE L1 6130 6984 -21 1936 128 3 51 chr13 31256331 31256644 -88488254 + AluSg SINE Alu 1 298 -12 923 196 28 46 chr13 31256663 31256948 -88487950 + L1M4 LINE L1 1264 1543 -4999 2348 93 0 0 chr13 31256965 31257265 -88487633 + AluSx SINE Alu 1 300 -12 1160 222 161 49 chr13 31257270 31257886 -88487012 + L1M4 LINE L1 1760 2444 -4202 349 270 70 42 chr13 31258098 31258313 -88486585 + LTR33A LTR ERVL 299 519 -4 568 299 27 35 chr13 31258315 31258545 -88486353 + L1ME3 LINE L1 5263 5508 -656 2111 135 0 0 chr13 31258545 31258848 -88486050 - AluSg SINE Alu -7 303 1 568 299 27 35 chr13 31258848 31258984 -88485914 + L1ME3 LINE L1 5508 5644 -520 328 284 0 47 chr13 31259034 31259182 -88485716 + MER112 DNA MER1_type 2 142 -118 2235 125 0 0 chr13 31259231 31259535 -88485363 - AluSg SINE Alu -6 304 1 357 253 0 0 chr13 31259574 31259657 -88485241 + MER112 DNA MER1_type 171 253 -7 566 259 49 41 chr13 31259689 31259868 -88485030 + L1ME3 LINE L1 5707 5890 -272 1716 143 111 7 chr13 31259868 31260147 -88484751 + AluSg SINE Alu 1 308 -2 566 259 49 41 chr13 31260147 31260210 -88484688 + L1ME3 LINE L1 5890 5951 -211 305 310 216 0 chr13 31260482 31260653 -88484245 + L3 LINE CR1 320 527 -1050 348 187 53 0 chr13 31260654 31260729 -88484169 - MER116 DNA Mariner 0 80 2 2143 104 0 63 chr13 31260845 31261161 -88483737 - AluSx SINE Alu -16 296 1 2070 138 0 3 chr13 31261290 31261594 -88483304 + AluSx SINE Alu 1 303 -9 215 349 111 24 chr13 31261606 31261947 -88482951 - L2 LINE L2 -962 2352 1982 201 152 87 22 chr13 31261949 31261995 -88482903 - L2 LINE L2 -4 3309 3261 333 274 124 26 chr13 31262023 31262176 -88482722 + L3 LINE CR1 617 784 -793 2886 120 127 72 chr13 31262179 31262761 -88482137 + LTR18B LTR ERVL 1 614 0 1314 211 10 30 chr13 31262774 31263073 -88481825 + HERVL18 LTR ERVL 5 297 -5750 732 188 17 1 chr13 31263067 31263301 -88481597 + HERVL18 LTR ERVL 492 763 -5284 * 267 217 0 54 chr13 31263307 31263399 -88481499 + HERVL18 LTR ERVL 874 960 -5087 990 214 6 10 chr13 31263401 31263750 -88481148 + HERVL18 LTR ERVL 1401 1810 -4237 387 147 13 7 chr13 31263749 31263953 -88480945 + HERVL18 LTR ERVL 2119 2452 -3595 * 4308 176 29 3 chr13 31263952 31264704 -88480194 + HERVL18 LTR ERVL 2720 3491 -2556 2933 127 88 67 chr13 31264886 31265487 -88479411 + LTR18B LTR ERVL 1 614 0 561 195 46 35 chr13 31265526 31265700 -88479198 + L1MC5 LINE L1 7271 7446 -515 464 91 39 13 chr13 31265782 31265859 -88479039 + L1MC2 LINE L1 6251 6329 -15 267 329 128 0 chr13 31266196 31266345 -88478553 - MIR3 SINE MIR -35 173 6 724 146 111 80 chr13 31266428 31266582 -88478316 + MER33 DNA MER1_type 3 168 -2417 2345 94 0 3 chr13 31266582 31266880 -88478018 + AluSx SINE Alu 1 297 -15 724 146 111 80 chr13 31266880 31266951 -88477947 + MER33 DNA MER1_type 168 235 -89 313 185 116 110 chr13 31267031 31267045 -88477853 + L1MC4 LINE L1 7689 7701 -341 2054 172 38 81 chr13 31267045 31267573 -88477325 - MLT1D LTR MaLR 0 505 1 313 185 116 110 chr13 31267573 31267850 -88477048 + L1MC4 LINE L1 7701 7982 -60 1984 125 0 17 chr13 31267991 31268279 -88476619 + AluSx SINE Alu 1 283 -29 2658 148 107 53 chr13 31268818 31269399 -88475499 - LTR9 LTR ERV1 0 612 1 423 323 39 22 chr13 31270080 31270309 -88474589 + L1MEd LINE L1 523 755 -5364 2243 123 0 16 chr13 31272431 31272739 -88472159 + AluSq SINE Alu 1 303 -10 2239 85 0 47 chr13 31272847 31273164 -88471734 - AluY SINE Alu -9 302 1 314 310 61 5 chr13 31273243 31273456 -88471442 + L1MEd LINE L1 924 1148 -4971 926 286 40 28 chr13 31273491 31273987 -88470911 + L1MEd LINE L1 1164 1665 -4645 187 284 149 14 chr13 31274305 31274379 -88470519 - MIR SINE MIR -104 158 75 2291 122 0 0 chr13 31274421 31274733 -88470165 + AluSx SINE Alu 1 312 0 206 302 19 0 chr13 31275750 31275803 -88469095 + L2 LINE L2 3215 3268 -4 1697 142 49 59 chr13 31275961 31276249 -88468649 - AluSx SINE Alu -27 285 1 22 70 0 0 chr13 31277241 31277284 -88467614 + AT_rich Low_complexity Low_complexity 1 43 0 1372 100 5 5 chr13 31277408 31277598 -88467300 + AluSp SINE Alu 124 313 0 1532 176 0 69 chr13 31277609 31277944 -88466954 + AluJb SINE Alu 1 312 0 2231 106 0 3 chr13 31278069 31278370 -88466528 - AluSq SINE Alu -13 300 1 1978 221 50 38 chr13 31278901 31279372 -88465526 + L1M4 LINE L1 3507 3947 -2199 1573 193 0 4 chr13 31279372 31279641 -88465257 + AluJb SINE Alu 1 268 -44 1978 221 50 38 chr13 31279641 31279976 -88464922 + L1M4 LINE L1 3947 4277 -1869 2133 120 0 0 chr13 31279979 31280300 -88464598 + AluSx SINE Alu 1 321 0 2111 133 0 0 chr13 31280303 31280611 -88464287 + AluY SINE Alu 1 308 -3 652 192 0 0 chr13 31280631 31280751 -88464147 + FLAM_A SINE Alu 1 120 -13 1780 153 30 14 chr13 31280787 31281082 -88463816 + AluJb SINE Alu 11 310 -2 1244 102 0 0 chr13 31281111 31281277 -88463621 + AluSg/x SINE Alu 135 300 -10 1066 138 12 6 chr13 31281451 31281611 -88463287 - AluSp SINE Alu -20 293 133 330 304 188 14 chr13 31281613 31281751 -88463147 - MIR SINE MIR -97 165 4 2116 147 59 5 chr13 31281759 31282146 -88462752 + L1PA16 LINE L1 5759 6166 0 22 35 0 0 chr13 31282146 31282175 -88462723 + AT_rich Low_complexity Low_complexity 1 29 0 257 232 0 0 chr13 31282197 31282253 -88462645 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 992 149 0 0 chr13 31282517 31282679 -88462219 + AluSg/x SINE Alu 143 304 0 201 185 292 0 chr13 31283777 31283842 -88461056 + L2 LINE L2 3228 3311 -2 210 37 0 0 chr13 31283876 31283903 -88460995 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2229 92 0 0 chr13 31283905 31284188 -88460710 - AluSq SINE Alu -30 283 1 1748 108 46 23 chr13 31284247 31284507 -88460391 - MER1B DNA MER1_type -73 266 1 370 59 20 59 chr13 31285120 31285222 -88459676 + (TA)n Simple_repeat Simple_repeat 1 98 0 2191 79 3 7 chr13 31285222 31285512 -88459386 - AluSc SINE Alu -20 289 1 1237 75 0 0 chr13 31285859 31286020 -88458878 - AluY SINE Alu 0 311 151 21 36 0 0 chr13 31286398 31286426 -88458472 + AT_rich Low_complexity Low_complexity 1 28 0 2247 96 0 19 chr13 31286498 31286812 -88458086 - AluSx SINE Alu -2 310 3 498 298 53 58 chr13 31287453 31287580 -88457318 + MIR3 SINE MIR 16 143 -65 1960 123 3 41 chr13 31287580 31287896 -88457002 + AluSx SINE Alu 1 304 -8 498 298 53 58 chr13 31287896 31287956 -88456942 + MIR3 SINE MIR 143 202 -6 2266 44 0 11 chr13 31288071 31288341 -88456557 + AluY SINE Alu 1 267 -44 184 208 97 56 chr13 31289139 31289211 -88455687 - MIR3 SINE MIR -133 75 1 1995 141 3 0 chr13 31289280 31289571 -88455327 - AluSx SINE Alu -20 292 1 23 0 0 0 chr13 31289785 31289808 -88455090 + AT_rich Low_complexity Low_complexity 1 23 0 618 183 175 61 chr13 31291457 31291575 -88453323 + MER5C DNA MER1_type 1 104 -220 1634 175 52 7 chr13 31291575 31291861 -88453037 - AluSg SINE Alu -11 299 1 618 183 175 61 chr13 31291861 31291924 -88452974 + MER5C DNA MER1_type 104 158 -166 182 36 0 36 chr13 31291924 31291952 -88452946 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 2021 123 18 0 chr13 31291952 31292228 -88452670 - AluSx SINE Alu -29 283 3 618 183 175 61 chr13 31292228 31292290 -88452608 + MER5C DNA MER1_type 157 274 -50 1877 145 48 0 chr13 31292309 31292599 -88452299 + AluJb SINE Alu 1 304 -8 295 345 78 14 chr13 31292633 31292775 -88452123 + L2 LINE L2 2903 3053 -219 1450 172 79 29 chr13 31294039 31294318 -88450580 + AluJo SINE Alu 3 295 -17 2016 140 3 13 chr13 31294448 31294756 -88450142 - AluSx SINE Alu -7 305 1 2292 64 0 3 chr13 31295122 31295404 -88449494 + AluY SINE Alu 1 281 -30 2070 99 3 46 chr13 31295651 31295953 -88448945 - AluSx SINE Alu -10 302 14 244 274 36 48 chr13 31296374 31296458 -88448440 - L3 LINE CR1 -114 1463 1381 2199 121 0 0 chr13 31296483 31296788 -88448110 + AluSx SINE Alu 4 308 -4 232 330 148 0 chr13 31296912 31297000 -88447898 - L2 LINE L2 -4 3268 3168 613 158 12 33 chr13 31297354 31297613 -88447285 + AluJo SINE Alu 1 303 -9 2045 173 35 5 chr13 31297824 31298200 -88446698 - MLT1B LTR MaLR -1 389 3 4859 186 53 77 chr13 31298203 31299607 -88445291 - MLT1B-int LTR MaLR -1 1370 1 1953 144 38 12 chr13 31299609 31299950 -88444948 - MLT1B LTR MaLR -2 388 39 315 315 73 18 chr13 31300036 31300201 -88444697 - L2 LINE L2 0 3313 3140 396 380 80 9 chr13 31300305 31300531 -88444367 - L2 LINE L2 -384 2930 2689 410 269 39 10 chr13 31300531 31300635 -88444263 + L1ME3A LINE L1 6000 6106 -64 583 307 131 13 chr13 31300636 31300949 -88443949 - L2 LINE L2 -737 2577 2228 360 274 68 8 chr13 31300980 31301097 -88443801 - L2 LINE L2 -6 3307 3184 544 315 49 36 chr13 31301143 31301473 -88443425 - L2 LINE L2 -278 3035 2633 710 293 174 26 chr13 31301482 31302058 -88442840 - L2 LINE L2 -1112 2202 1542 1076 156 106 28 chr13 31302775 31302993 -88441905 + MER46A DNA MER2_type 1 235 -1 35 0 0 0 chr13 31303926 31303961 -88440937 + AT_rich Low_complexity Low_complexity 1 35 0 2234 104 7 0 chr13 31304089 31304388 -88440510 - AluSx SINE Alu -11 301 1 191 372 58 0 chr13 31304634 31304720 -88440178 + MIR SINE MIR 49 139 -123 2414 63 0 3 chr13 31306341 31306640 -88438258 + AluY SINE Alu 1 298 -13 21 0 0 0 chr13 31307175 31307196 -88437702 + AT_rich Low_complexity Low_complexity 1 21 0 510 194 29 10 chr13 31308128 31308231 -88436667 + FLAM_A SINE Alu 12 116 -26 2248 95 0 20 chr13 31308443 31308748 -88436150 + AluSx SINE Alu 1 299 -13 1287 188 51 51 chr13 31308759 31309035 -88435863 + AluJo SINE Alu 6 281 -31 2149 112 0 3 chr13 31309333 31309627 -88435271 - AluSx SINE Alu -19 293 1 22 70 0 0 chr13 31311191 31311234 -88433664 + AT_rich Low_complexity Low_complexity 1 43 0 343 191 25 134 chr13 31312025 31312182 -88432716 + L1ME3A LINE L1 5823 5962 -208 493 285 40 45 chr13 31312269 31312469 -88432429 + L1ME3A LINE L1 5966 6164 -6 1052 159 35 89 chr13 31312759 31312962 -88431936 + AluJb SINE Alu 46 234 -78 1987 128 24 3 chr13 31312962 31313260 -88431638 + AluSq SINE Alu 1 304 -9 1052 159 35 89 chr13 31313260 31313313 -88431585 + AluJb SINE Alu 234 288 -24 25 31 0 0 chr13 31313434 31313466 -88431432 + AT_rich Low_complexity Low_complexity 1 32 0 530 143 0 19 chr13 31313796 31313901 -88430997 + L1MB8 LINE L1 6071 6173 -5 2287 95 0 16 chr13 31313962 31314277 -88430621 + AluY SINE Alu 1 310 -1 669 246 39 75 chr13 31314358 31314692 -88430206 + MER46C DNA MER2_type 2 323 -15 2157 110 0 0 chr13 31315283 31315582 -88429316 + AluSx SINE Alu 1 299 -13 30 0 0 0 chr13 31315863 31315893 -88429005 + AT_rich Low_complexity Low_complexity 1 30 0 1955 152 3 3 chr13 31316698 31316995 -88427903 + AluSx SINE Alu 1 297 -15 2107 124 3 0 chr13 31316995 31317293 -88427605 + AluSg SINE Alu 1 299 -11 1643 94 17 6 chr13 31317298 31317539 -88427359 + L1PB1 LINE L1 5888 6129 -22 2054 131 0 0 chr13 31318348 31318653 -88426245 - AluJb SINE Alu 0 305 1 32 0 0 0 chr13 31318851 31318883 -88426015 + AT_rich Low_complexity Low_complexity 1 32 0 270 200 0 0 chr13 31319085 31319130 -88425768 + AluSc SINE Alu 127 171 -128 949 144 0 0 chr13 31319132 31319264 -88425634 + AluJo/FRAM SINE Alu 156 287 -25 626 225 105 112 chr13 31319312 31320200 -88424698 + L1MC5 LINE L1 7036 7917 -44 474 285 8 49 chr13 31320273 31320396 -88424502 + MER5B DNA MER1_type 1 118 -60 273 75 0 0 chr13 31320399 31320439 -88424459 + (T)n Simple_repeat Simple_repeat 1 40 0 272 173 19 0 chr13 31320443 31320495 -88424403 + MER5B DNA MER1_type 125 177 -1 420 323 29 31 chr13 31320779 31320990 -88423908 - MIR SINE MIR -50 212 3 2258 86 21 0 chr13 31321372 31321662 -88423236 - AluSg SINE Alu -14 296 1 1624 146 104 19 chr13 31322471 31322779 -88422119 + MER2 DNA MER2_type 7 340 -5 398 130 26 26 chr13 31322833 31322910 -88421988 - MADE1 DNA Mariner -1 79 3 212 57 0 29 chr13 31323245 31323280 -88421618 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2310 104 0 3 chr13 31323309 31323616 -88421282 - AluSx SINE Alu -5 307 2 197 253 121 0 chr13 31324161 31324244 -88420654 - MIR SINE MIR 0 262 170 1660 261 53 37 chr13 31324347 31324892 -88420006 + MLT1E LTR MaLR 23 576 -17 2065 192 63 21 chr13 31325332 31325806 -88419092 - MLT1D LTR MaLR -9 496 3 325 314 35 30 chr13 31325933 31326102 -88418796 - L1 LINE L1 -1085 5061 4892 2426 80 0 6 chr13 31326170 31326481 -88418417 - AluSc SINE Alu 0 309 1 21 0 0 0 chr13 31326481 31326502 -88418396 + AT_rich Low_complexity Low_complexity 1 21 0 677 157 35 9 chr13 31326502 31326617 -88418281 - FLAM_C SINE Alu -25 118 1 320 281 180 11 chr13 31326617 31326884 -88418014 - L1 LINE L1 -1316 4830 4519 728 138 111 3 chr13 31327108 31327332 -88417566 - AluJb SINE Alu -6 306 1 818 174 0 0 chr13 31329163 31329295 -88415603 - FLAM_C SINE Alu 0 133 2 22 35 0 0 chr13 31330652 31330681 -88414217 + AT_rich Low_complexity Low_complexity 1 29 0 228 67 0 0 chr13 31330842 31330872 -88414026 + (TA)n Simple_repeat Simple_repeat 2 31 0 1602 122 21 14 chr13 31331383 31331662 -88413236 + AluSx SINE Alu 1 281 -31 270 208 13 52 chr13 31332968 31333045 -88411853 + MIR SINE MIR 183 256 -6 618 245 179 72 chr13 31333396 31333585 -88411313 - L1MC4 LINE L1 -537 7505 7338 2366 95 0 0 chr13 31333585 31333891 -88411007 + AluSq SINE Alu 1 306 -7 618 245 179 72 chr13 31333891 31334158 -88410740 - L1MC4 LINE L1 -704 7338 7000 1294 143 19 184 chr13 31334164 31334563 -88410335 - L1MC3 LINE L1 -8 7777 7467 2167 124 3 0 chr13 31334563 31334869 -88410029 - AluSx SINE Alu -5 307 1 1294 143 19 184 chr13 31334869 31334943 -88409955 - L1MC3 LINE L1 -318 7467 7382 269 61 0 0 chr13 31334943 31334976 -88409922 + MLT1A2 LTR MaLR 281 313 -61 1316 185 0 0 chr13 31334980 31335202 -88409696 - AluJb SINE Alu -4 308 87 311 107 36 0 chr13 31335239 31335295 -88409603 + T-rich Low_complexity Low_complexity 2 59 0 1813 179 0 10 chr13 31335317 31335613 -88409285 - AluJb SINE Alu -18 294 2 757 262 71 46 chr13 31335690 31336127 -88408771 - MER39 LTR ERV1 0 629 39 3465 155 113 119 chr13 31336145 31336708 -88408190 + L1 LINE L1 4275 4840 -1306 1963 136 0 0 chr13 31336708 31336980 -88407918 + AluSx SINE Alu 7 278 -34 243 0 0 0 chr13 31336985 31337012 -88407886 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3465 155 113 119 chr13 31337012 31337083 -88407815 + L1 LINE L1 4844 4914 -1232 1920 138 7 0 chr13 31337083 31337359 -88407539 - AluSg SINE Alu -32 278 1 2217 126 0 3 chr13 31337363 31337672 -88407226 - AluSx SINE Alu -4 308 1 3465 155 113 119 chr13 31337672 31338092 -88406806 + L1 LINE L1 4917 5336 -810 2092 119 7 3 chr13 31338092 31338385 -88406513 - AluSc SINE Alu -11 298 5 3465 155 113 119 chr13 31338385 31338441 -88406457 + L1 LINE L1 5336 5391 -755 320 104 0 21 chr13 31338422 31338470 -88406428 + L1MB2 LINE L1 4876 4922 -1224 * 354 200 0 0 chr13 31338470 31338525 -88406373 + Alu SINE Alu 1 55 -245 1999 125 4 0 chr13 31338527 31338852 -88406046 + AluSq SINE Alu 3 328 0 1047 172 23 50 chr13 31338852 31339073 -88405825 + MSTB2 LTR MaLR 240 454 -3 363 171 0 0 chr13 31340621 31340691 -88404207 + L1MB4 LINE L1 6111 6180 0 811 184 12 212 chr13 31340694 31340833 -88404065 + L1MB2 LINE L1 4995 5160 -986 1991 142 0 0 chr13 31340833 31341114 -88403784 + AluSx SINE Alu 1 281 -31 317 158 18 0 chr13 31341114 31341171 -88403727 + Alu SINE Alu 245 302 0 811 184 12 212 chr13 31341171 31341393 -88403505 + L1MB2 LINE L1 5158 5329 -817 1728 117 41 63 chr13 31341395 31341712 -88403186 + AluJb SINE Alu 3 312 0 243 0 0 0 chr13 31341718 31341745 -88403153 + (TA)n Simple_repeat Simple_repeat 2 28 0 4240 146 72 45 chr13 31341836 31342331 -88402567 + L1MB2 LINE L1 5322 5849 -322 641 217 8 0 chr13 31342331 31342451 -88402447 + FLAM_C SINE Alu 1 121 -12 4240 146 72 45 chr13 31342451 31342776 -88402122 + L1MB2 LINE L1 5849 6164 -7 848 308 13 0 chr13 31344153 31344377 -88400521 + MIR SINE MIR 2 228 -34 1520 199 21 0 chr13 31344705 31344991 -88399907 + AluJo SINE Alu 1 292 -20 2188 110 0 28 chr13 31344993 31345311 -88399587 + AluSx SINE Alu 1 309 -3 201 242 16 0 chr13 31345606 31345668 -88399230 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 189 0 0 0 chr13 31345704 31345725 -88399173 + (TC)n Simple_repeat Simple_repeat 2 22 0 2210 121 0 6 chr13 31345725 31346039 -88398859 - AluSx SINE Alu 0 312 1 2064 203 17 3 chr13 31346254 31346614 -88398284 + MLT1A1 LTR MaLR 1 365 0 40 0 0 0 chr13 31346636 31346676 -88398222 + AT_rich Low_complexity Low_complexity 1 40 0 200 234 21 0 chr13 31346785 31346832 -88398066 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 883 261 47 8 chr13 31346838 31347091 -88397807 - L1MC4a LINE L1 -1838 5970 5708 217 295 45 36 chr13 31347164 31347276 -88397622 + L2 LINE L2 2185 2297 -1017 1270 134 8 5 chr13 31348080 31348453 -88396445 + LTR47B LTR ERVL 1 443 0 4246 86 21 3 chr13 31348552 31349150 -88395748 + L1PA13 LINE L1 5564 6171 0 1563 137 15 27 chr13 31349334 31349596 -88395302 - THE1C LTR MaLR 0 375 117 1576 157 0 130 chr13 31349751 31349948 -88394950 - AluJo SINE Alu -1 301 167 1971 136 0 7 chr13 31349948 31350235 -88394663 - AluSx SINE Alu -27 285 1 1576 157 0 130 chr13 31350235 31350382 -88394516 - AluJo SINE Alu -135 167 2 244 220 34 85 chr13 31350383 31350423 -88394475 - L1ME2 LINE L1 -194 5970 5930 1913 125 76 0 chr13 31350423 31350711 -88394187 + AluSg SINE Alu 1 310 0 244 220 34 85 chr13 31350711 31350788 -88394110 - L1ME2 LINE L1 -234 5930 5859 2178 222 41 32 chr13 31350837 31351533 -88393365 - L1ME2 LINE L1 -306 5860 5158 768 187 38 106 chr13 31351533 31351758 -88393140 + L1MA4 LINE L1 5995 6161 -139 773 191 8 8 chr13 31351758 31351884 -88393014 + FLAM_A SINE Alu 1 126 -7 768 187 38 106 chr13 31351884 31352011 -88392887 + L1MA4 LINE L1 6161 6295 -5 * 3438 231 31 27 chr13 31352002 31352798 -88392100 - L1ME2 LINE L1 -968 5178 4387 2238 105 3 3 chr13 31352798 31353092 -88391806 - AluSc SINE Alu -15 294 1 3438 231 31 27 chr13 31353092 31353142 -88391756 - L1ME2 LINE L1 -1759 4387 4339 1965 153 0 7 chr13 31353142 31353437 -88391461 + AluSx SINE Alu 1 293 -19 3438 231 31 27 chr13 31353437 31353641 -88391257 - L1ME2 LINE L1 -1807 4339 4122 465 217 45 54 chr13 31353646 31353867 -88391031 - L1ME2 LINE L1 -2900 3246 3028 198 0 0 0 chr13 31353877 31353899 -88390999 + (T)n Simple_repeat Simple_repeat 1 22 0 2031 91 52 21 chr13 31353943 31354229 -88390669 + AluY SINE Alu 1 295 -16 3551 102 4 2 chr13 31354408 31354896 -88390002 + MER41B LTR ERV1 147 635 0 982 202 99 34 chr13 31354896 31355129 -88389769 - MER57A-int LTR ERV1 -7287 250 3 2191 197 33 0 chr13 31355131 31355521 -88389377 - MER57A LTR ERV1 0 403 1 254 228 53 0 chr13 31355521 31355578 -88389320 - MER45 DNA AcHobo -876 77 18 1816 169 42 17 chr13 31355578 31355934 -88388964 + MLT1A1 LTR MaLR 1 365 0 2229 131 0 0 chr13 31356058 31356370 -88388528 + AluSx SINE Alu 1 312 0 338 299 116 42 chr13 31356370 31356654 -88388244 + L1ME4a LINE L1 5737 6041 -80 257 0 30 0 chr13 31357261 31357294 -88387604 + (TA)n Simple_repeat Simple_repeat 2 35 0 2125 109 7 7 chr13 31357294 31357588 -88387310 - AluSq SINE Alu -18 295 2 462 78 70 0 chr13 31358246 31358374 -88386524 + (TA)n Simple_repeat Simple_repeat 2 138 0 24 0 0 0 chr13 31358374 31358398 -88386500 + AT_rich Low_complexity Low_complexity 1 24 0 682 33 44 50 chr13 31358398 31358579 -88386319 + (TA)n Simple_repeat Simple_repeat 1 180 0 2119 111 32 0 chr13 31358579 31358859 -88386039 - AluSx SINE Alu -23 289 1 389 109 0 0 chr13 31359776 31359831 -88385067 - MSTA LTR MaLR 0 428 374 1862 132 150 6 chr13 31359899 31360226 -88384672 - MSTA LTR MaLR -54 374 1 2081 122 21 0 chr13 31360589 31360877 -88384021 - AluSg SINE Alu -14 296 3 2047 135 3 0 chr13 31361138 31361441 -88383457 - AluSp SINE Alu -9 304 1 2303 106 0 0 chr13 31361542 31361845 -88383053 + AluSc SINE Alu 4 306 -3 1594 184 3 11 chr13 31361926 31362209 -88382689 + AluJb SINE Alu 1 281 -31 2041 115 0 14 chr13 31362209 31362503 -88382395 - AluSc SINE Alu -18 291 1 996 122 0 0 chr13 31362699 31362838 -88382060 - AluSq/x SINE Alu -174 139 1 3289 168 20 19 chr13 31362839 31363593 -88381305 - L1MA8 LINE L1 -461 5830 5074 2661 113 68 5 chr13 31363593 31363993 -88380905 - MSTB LTR MaLR 0 426 2 3289 168 20 19 chr13 31363993 31364029 -88380869 - L1MA8 LINE L1 -1217 5074 5040 555 16 0 0 chr13 31364039 31364103 -88380795 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 934 182 53 0 chr13 31364103 31364273 -88380625 - AluSg/x SINE Alu 0 310 132 803 159 22 0 chr13 31364276 31364414 -88380484 - L1MA8 LINE L1 -1094 5052 4912 204 97 0 0 chr13 31364415 31364446 -88380452 + (ATTG)n Simple_repeat Simple_repeat 4 34 0 824 184 21 7 chr13 31364450 31364591 -88380307 - AluJb SINE Alu -37 275 133 1452 183 3 99 chr13 31364591 31364925 -88379973 - AluJb SINE Alu 0 302 1 1406 147 25 4 chr13 31364930 31365168 -88379730 - MSTB2 LTR MaLR -214 243 1 292 378 7 14 chr13 31365262 31365279 -88379619 + L2 LINE L2 2564 2580 -734 2696 189 42 12 chr13 31365279 31365637 -88379261 + LTR42 LTR ERVL 1 378 -117 2319 96 6 3 chr13 31365637 31365949 -88378949 - AluSp SINE Alu 0 313 1 2696 189 42 12 chr13 31365949 31366071 -88378827 + LTR42 LTR ERVL 378 495 0 292 378 7 14 chr13 31366071 31366196 -88378702 + L2 LINE L2 2580 2705 -609 331 407 19 0 chr13 31366207 31366369 -88378529 - L2 LINE L2 -4 3268 3104 1595 201 26 63 chr13 31366372 31366749 -88378149 + MLT2D LTR ERVL 1 363 -51 1163 157 30 0 chr13 31366749 31366946 -88377952 + MER2 DNA MER2_type 4 206 -139 344 122 0 0 chr13 31367024 31367073 -88377825 + MLT2D LTR ERVL 472 520 0 321 221 44 44 chr13 31367180 31367293 -88377605 + MER117 DNA MER1_type 12 124 -73 272 294 69 0 chr13 31367496 31367598 -88377300 - MIR SINE MIR -121 141 33 1498 150 21 25 chr13 31367762 31368002 -88376896 - AluJo SINE Alu -73 239 1 283 329 29 0 chr13 31368060 31368200 -88376698 - MIR SINE MIR 0 262 119 2084 133 0 0 chr13 31368441 31368727 -88376171 - AluSc SINE Alu -23 286 1 7898 43 0 0 chr13 31368903 31370193 -88374705 + L1PA5 LINE L1 4865 6154 0 282 276 35 0 chr13 31370240 31370327 -88374571 + L1ME LINE L1 5528 5617 -504 489 158 0 88 chr13 31370354 31370413 -88374485 - L1MC5 LINE L1 -53 7908 7845 2859 101 8 11 chr13 31370413 31370789 -88374109 + THE1C LTR MaLR 1 375 0 10907 105 39 37 chr13 31370789 31372365 -88372533 + THE1C-int LTR MaLR 1 1580 0 2821 116 0 11 chr13 31372365 31372744 -88372154 + THE1C LTR MaLR 1 375 0 489 158 0 88 chr13 31372744 31372796 -88372102 - L1MC5 LINE L1 -113 7848 7805 366 231 157 0 chr13 31372936 31373044 -88371854 - L1ME3A LINE L1 0 6170 6046 730 146 59 83 chr13 31373061 31373315 -88371583 - L1MC5 LINE L1 -261 7700 7453 1411 198 67 56 chr13 31373319 31373716 -88371182 - L1MC5 LINE L1 -579 7382 6978 2285 92 0 7 chr13 31373716 31374032 -88370866 - AluSc SINE Alu 0 309 1 1411 198 67 56 chr13 31374032 31374115 -88370783 - L1MC5 LINE L1 -983 6978 6897 236 305 25 25 chr13 31374112 31374230 -88370668 + L1ME LINE L1 5750 5867 -254 * 25 31 0 0 chr13 31374230 31374262 -88370636 + AT_rich Low_complexity Low_complexity 1 32 0 1737 166 21 0 chr13 31375284 31375568 -88369330 - AluJo SINE Alu -22 290 1 2321 84 3 0 chr13 31376309 31376607 -88368291 - AluSg1 SINE Alu -10 299 1 2099 203 76 13 chr13 31377048 31377521 -88367377 + MLT1D LTR MaLR 1 503 -2 192 253 161 23 chr13 31378197 31378284 -88366614 - L2 LINE L2 0 3313 3215 2265 104 7 7 chr13 31378285 31378594 -88366304 + AluSc SINE Alu 1 309 0 41 66 0 0 chr13 31380379 31380455 -88364443 + GC_rich Low_complexity Low_complexity 1 76 0 49 69 0 9 chr13 31380509 31380591 -88364307 + GC_rich Low_complexity Low_complexity 1 83 -32 204 40 0 0 chr13 31380591 31380616 -88364282 + (CCG)n Simple_repeat Simple_repeat 3 27 0 49 69 0 9 chr13 31380616 31380649 -88364249 + GC_rich Low_complexity Low_complexity 83 115 0 37 76 0 0 chr13 31380720 31380799 -88364099 + GC_rich Low_complexity Low_complexity 1 79 0 248 273 108 65 chr13 31382715 31382854 -88362044 - MIR3 SINE MIR -23 185 41 21 0 0 0 chr13 31384563 31384584 -88360314 + AT_rich Low_complexity Low_complexity 1 21 0 2145 111 34 0 chr13 31384720 31385017 -88359881 - AluSg SINE Alu -3 307 1 28 61 0 0 chr13 31385100 31385149 -88359749 + AT_rich Low_complexity Low_complexity 1 49 0 261 285 139 0 chr13 31385173 31385338 -88359560 - L1MC/D LINE L1 -2248 5560 5373 2204 98 0 10 chr13 31385851 31386158 -88358740 - AluSq SINE Alu -9 304 1 290 275 148 40 chr13 31386396 31386545 -88358353 + MIR SINE MIR 2 166 -96 568 197 61 0 chr13 31386545 31386677 -88358221 - L1MB7 LINE L1 0 6184 6045 267 163 0 0 chr13 31386699 31386748 -88358150 + L1MA5 LINE L1 5546 5594 -706 * 413 159 105 2 chr13 31386722 31386838 -88358060 + L1MA5 LINE L1 5958 6096 -204 2127 143 91 10 chr13 31386838 31386988 -88357910 - Tigger2 DNA MER2_type 0 2718 2582 1983 91 0 0 chr13 31386988 31387241 -88357657 - AluSq SINE Alu -60 253 1 2127 143 91 10 chr13 31387241 31387496 -88357402 - Tigger2 DNA MER2_type -136 2582 2280 377 143 0 0 chr13 31387494 31387550 -88357348 - Tigger2 DNA MER2_type -2649 69 14 * 1028 120 40 0 chr13 31387551 31387726 -88357172 + L1MA5 LINE L1 6114 6295 -5 296 294 12 0 chr13 31388813 31388898 -88356000 + L2 LINE L2 2438 2523 -791 22 0 0 0 chr13 31388917 31388939 -88355959 + AT_rich Low_complexity Low_complexity 1 22 0 343 198 10 0 chr13 31389425 31389493 -88355405 + AluS SINE Alu 2 57 -244 23 33 0 0 chr13 31389641 31389671 -88355227 + AT_rich Low_complexity Low_complexity 1 30 0 2979 207 102 4 chr13 31389671 31390630 -88354268 - L1ME2 LINE L1 -9 6089 5041 1933 129 16 32 chr13 31390633 31390943 -88353955 - AluJo SINE Alu -7 305 1 287 270 0 0 chr13 31390943 31391017 -88353881 - L1ME2 LINE L1 -1978 4102 4029 699 169 48 16 chr13 31391018 31391142 -88353756 + FLAM_A SINE Alu 1 128 -5 2065 91 6 72 chr13 31391144 31391463 -88353435 + AluSc SINE Alu 1 298 -11 338 229 10 10 chr13 31391517 31391613 -88353285 - L1ME2 LINE L1 -2045 4035 3940 22 35 0 0 chr13 31391659 31391688 -88353210 + AT_rich Low_complexity Low_complexity 1 29 0 2161 92 11 7 chr13 31391689 31391973 -88352925 - AluSg SINE Alu -25 285 1 871 186 14 0 chr13 31392087 31392227 -88352671 - FRAM SINE Alu -26 150 9 443 268 41 41 chr13 31392227 31392359 -88352539 - L1ME2 LINE L1 -4672 1589 1455 2471 87 0 0 chr13 31392359 31392670 -88352228 - AluY SINE Alu 0 311 1 443 268 41 41 chr13 31392670 31392731 -88352167 - L1ME2 LINE L1 -4805 1456 1396 402 201 129 110 chr13 31392818 31392860 -88352038 - L1ME2 LINE L1 -4863 1115 1075 2136 121 0 10 chr13 31392860 31393165 -88351733 - AluSg SINE Alu -8 302 1 402 201 129 110 chr13 31393165 31393233 -88351665 - L1ME2 LINE L1 -4903 1075 1046 2289 90 7 10 chr13 31393233 31393534 -88351364 + AluY SINE Alu 1 300 -11 402 201 129 110 chr13 31393534 31393631 -88351267 - L1ME2 LINE L1 -4932 1046 952 332 221 108 15 chr13 31393727 31393929 -88350969 - L1ME2 LINE L1 -5236 834 484 2092 117 7 10 chr13 31394057 31394357 -88350541 + AluSx SINE Alu 1 299 -13 476 276 125 53 chr13 31394458 31394897 -88350001 - L1ME2 LINE L1 -5597 473 12 37965 65 14 4 chr13 31395695 31401773 -88343125 - L1PA5 LINE L1 -2 6152 12 1481 259 75 60 chr13 31402010 31402659 -88342239 - MLT2F LTR ERVL -4 659 1 1877 232 71 35 chr13 31402964 31403499 -88341399 - ERVL LTR ERVL -360 5404 4851 727 233 88 18 chr13 31403516 31403744 -88341154 - L2 LINE L2 -1626 1688 1445 237 202 32 96 chr13 31403956 31404050 -88340848 + MIR SINE MIR 175 262 0 728 248 124 5 chr13 31404267 31404477 -88340421 + MIR SINE MIR 11 245 -17 297 351 73 20 chr13 31404953 31405104 -88339794 + L2 LINE L2 2582 2740 -574 2140 119 0 3 chr13 31405104 31405407 -88339491 - AluJb SINE Alu -8 304 3 1196 74 0 13 chr13 31405819 31405968 -88338930 - AluSq/x SINE Alu -165 147 1 742 173 12 36 chr13 31405976 31406144 -88338754 - L1MB8 LINE L1 0 6178 6015 1751 190 65 8 chr13 31406154 31406522 -88338376 + MSTD LTR MaLR 1 389 -7 3256 204 32 4 chr13 31406523 31407879 -88337019 - L1MB8 LINE L1 -185 5993 4602 2320 103 0 0 chr13 31407898 31408198 -88336700 - AluSx SINE Alu -12 300 1 213 281 151 41 chr13 31408279 31408425 -88336473 - MIR SINE MIR -98 164 3 931 222 73 28 chr13 31408577 31408865 -88336033 - L1ME3A LINE L1 -37 6116 5816 184 307 163 33 chr13 31409238 31409453 -88335445 + MIR SINE MIR 14 256 -6 2411 75 0 3 chr13 31409660 31409955 -88334943 - AluSq SINE Alu -19 294 1 344 288 50 25 chr13 31411062 31411260 -88333638 + MLT1L LTR MaLR 1 203 -412 275 214 127 40 chr13 31411269 31411395 -88333503 - L1ME3A LINE L1 -685 5462 5326 1071 156 53 97 chr13 31411464 31411824 -88333074 - MLT1A1 LTR MaLR -3 362 19 942 237 35 9 chr13 31411882 31412110 -88332788 + Tigger7 DNA MER2_type 1 234 -471 297 197 42 0 chr13 31412111 31412182 -88332716 + Tigger7 DNA MER2_type 2482 2555 -32 318 270 98 42 chr13 31412444 31412659 -88332239 - L1ME3A LINE L1 -1176 4953 4727 2639 147 153 6 chr13 31412833 31413349 -88331549 - MER7C DNA MER2_type -1 601 10 2152 128 0 0 chr13 31413403 31413699 -88331199 - AluSq SINE Alu -17 296 1 398 258 161 51 chr13 31413845 31413982 -88330916 - L1ME3A LINE L1 -1909 4220 4099 2389 54 10 10 chr13 31413982 31414276 -88330622 + AluY SINE Alu 7 300 -11 398 258 161 51 chr13 31414276 31414530 -88330368 - L1ME3A LINE L1 -2030 4099 3786 359 131 172 30 chr13 31414571 31414670 -88330228 - MER3 DNA MER1_type -96 113 1 1919 154 0 10 chr13 31414782 31415075 -88329823 + AluJb SINE Alu 1 290 -22 374 286 137 24 chr13 31415082 31415324 -88329574 - L1ME3A LINE L1 -2515 3614 3401 810 215 98 5 chr13 31415324 31415529 -88329369 + MER58A DNA MER1_type 1 224 0 374 286 137 24 chr13 31415529 31415923 -88328975 - L1ME3A LINE L1 -2728 3401 2906 353 290 101 22 chr13 31415930 31416426 -88328472 - L1ME3A LINE L1 -3279 2850 2316 914 193 69 112 chr13 31416446 31416946 -88327952 - LTR8A LTR ERV1 -15 707 102 776 208 72 44 chr13 31416989 31417239 -88327659 - LTR8 LTR ERV1 -434 257 1 1600 107 0 0 chr13 31417409 31417624 -88327274 - AluSc SINE Alu -8 301 87 21 0 0 0 chr13 31417631 31417652 -88327246 + AT_rich Low_complexity Low_complexity 1 21 0 237 261 159 52 chr13 31417884 31418344 -88326554 - L1ME3A LINE L1 -5011 1108 600 243 88 0 0 chr13 31418699 31418733 -88326165 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1009 185 177 12 chr13 31418733 31418976 -88325922 - AluJb SINE Alu -18 284 2 2006 141 0 7 chr13 31419436 31419740 -88325158 - AluSx SINE Alu -10 302 1 1634 231 94 36 chr13 31420314 31420864 -88324034 - MER119 DNA MER1_type -1 582 1 209 229 16 33 chr13 31421448 31421509 -88323389 + GA-rich Low_complexity Low_complexity 1 60 0 2020 119 31 3 chr13 31421875 31422168 -88322730 + AluSx SINE Alu 1 301 -11 369 261 90 24 chr13 31422378 31422652 -88322246 - L1P4 LINE L1 -302 5819 5533 313 274 10 49 chr13 31423381 31423483 -88321415 + MIR SINE MIR 57 154 -108 1053 144 8 81 chr13 31423901 31424137 -88320761 + MER20B DNA MER1_type 1 219 0 801 263 106 32 chr13 31424255 31424390 -88320508 + L2 LINE L2 2950 3074 -239 2097 99 13 33 chr13 31424390 31424693 -88320205 - AluSx SINE Alu -15 297 1 801 263 106 32 chr13 31424693 31424704 -88320194 + L2 LINE L2 3074 3083 -230 1595 166 83 3 chr13 31424704 31424993 -88319905 - AluJb SINE Alu 0 312 1 801 263 106 32 chr13 31424993 31425184 -88319714 + L2 LINE L2 3083 3313 0 276 322 0 22 chr13 31425449 31425539 -88319359 + MER5A DNA MER1_type 36 123 -66 2241 178 103 8 chr13 31425564 31426422 -88318476 + L1MB4 LINE L1 4887 5831 -349 1373 90 6 0 chr13 31426422 31426599 -88318299 + AluSc SINE Alu 1 178 -131 1262 148 114 25 chr13 31426608 31426932 -88317966 + L1MB4 LINE L1 5828 6180 0 351 171 13 0 chr13 31426944 31427020 -88317878 + L1MB8 LINE L1 6102 6178 0 1299 181 81 54 chr13 31427970 31428184 -88316714 - L1MB7 LINE L1 -347 5837 5630 2205 104 3 3 chr13 31428184 31428481 -88316417 - AluSg SINE Alu -13 297 1 1299 181 81 54 chr13 31428481 31428602 -88316296 - L1MB7 LINE L1 -554 5630 5514 1533 131 30 128 chr13 31428602 31428938 -88315960 - AluJo SINE Alu -9 303 1 2402 93 0 0 chr13 31428942 31429242 -88315656 - AluSc SINE Alu -9 300 1 1299 181 81 54 chr13 31429242 31429270 -88315628 - L1MB7 LINE L1 -672 5512 5458 2445 56 0 7 chr13 31429366 31429669 -88315229 - AluY SINE Alu -10 301 1 420 237 98 6 chr13 31429707 31429888 -88315010 + MIR SINE MIR 21 216 -46 377 242 153 32 chr13 31430111 31430235 -88314663 + MIR SINE MIR 16 154 -108 831 301 194 44 chr13 31430252 31431467 -88313431 - L2 LINE L2 -16 3297 1891 983 281 89 37 chr13 31431467 31431975 -88312923 - MLT1H LTR MaLR -4 545 12 487 266 42 151 chr13 31431978 31432622 -88312276 - L2 LINE L2 -1415 1899 1326 2071 141 0 0 chr13 31433843 31434147 -88310751 - AluSx SINE Alu -8 304 1 2501 53 0 10 chr13 31434373 31434676 -88310222 + AluY SINE Alu 1 300 -11 212 259 0 17 chr13 31434911 31434969 -88309929 + CT-rich Low_complexity Low_complexity 2 58 0 292 269 126 42 chr13 31435497 31435616 -88309282 + L2 LINE L2 3141 3269 -3 348 314 99 84 chr13 31435844 31436188 -88308710 - L2 LINE L2 -1 3271 2923 307 288 24 16 chr13 31436898 31437038 -88307860 - L1M4 LINE L1 -1062 5084 4944 2194 149 12 0 chr13 31437126 31437469 -88307429 + MER7A DNA MER2_type 1 345 -1 918 241 100 17 chr13 31437478 31437768 -88307130 - L1M4 LINE L1 -1812 4334 4021 436 171 0 40 chr13 31437802 31437878 -88307020 + Tigger5 DNA MER2_type 7 79 -2244 494 158 0 12 chr13 31437898 31437980 -88306918 + Tigger5 DNA MER2_type 2242 2322 -1 921 251 124 94 chr13 31438007 31438610 -88306288 - L1M4 LINE L1 -1856 4290 3650 1171 227 106 0 chr13 31438610 31438883 -88306015 - AluJo SINE Alu 0 302 1 921 251 124 94 chr13 31438883 31439174 -88305724 - L1M4 LINE L1 -2496 3650 3369 1230 222 100 61 chr13 31439306 31439573 -88305325 - L1ME3A LINE L1 0 6170 5915 264 40 60 0 chr13 31439573 31439623 -88305275 + (TG)n Simple_repeat Simple_repeat 2 54 0 1581 204 4 7 chr13 31439623 31439903 -88304995 - AluJb SINE Alu -29 283 5 1230 222 100 61 chr13 31439903 31440162 -88304736 - L1ME3A LINE L1 -254 5916 5622 229 116 47 0 chr13 31440210 31440253 -88304645 - L1MEd LINE L1 -3834 2810 2766 215 267 0 0 chr13 31440347 31440392 -88304506 - MIR SINE MIR -21 241 197 282 360 15 5 chr13 31440404 31440601 -88304297 - L1MEd LINE L1 -4722 2103 1905 23 0 0 0 chr13 31440628 31440651 -88304247 + AT_rich Low_complexity Low_complexity 1 23 0 321 303 64 26 chr13 31440818 31440897 -88304001 - L1MEd LINE L1 -5086 1456 1381 1378 176 74 35 chr13 31440897 31441181 -88303717 - AluJb SINE Alu -17 295 1 321 303 64 26 chr13 31441181 31441349 -88303549 - L1MEd LINE L1 -5161 1381 1225 294 316 147 26 chr13 31441392 31441658 -88303240 - L1MEd LINE L1 -5345 1289 992 21 36 0 0 chr13 31442050 31442078 -88302820 + AT_rich Low_complexity Low_complexity 1 28 0 1372 161 16 79 chr13 31446056 31446373 -88298525 + AluSx SINE Alu 1 297 -15 1792 127 56 0 chr13 31446621 31446905 -88297993 + AluSx SINE Alu 3 302 -10 240 288 0 30 chr13 31447023 31447089 -88297809 - L2 LINE L2 -50 3222 3159 5656 104 25 34 chr13 31448128 31448975 -88295923 - L1PA15 LINE L1 -4 6161 5308 2031 122 20 0 chr13 31448975 31449271 -88295627 - AluSg SINE Alu -8 302 1 5656 104 25 34 chr13 31449271 31450192 -88294706 - L1PA15 LINE L1 -857 5308 4397 1988 147 3 7 chr13 31450196 31450496 -88294402 - AluSx SINE Alu -13 299 1 2971 218 25 1 chr13 31450570 31451253 -88293645 - L1PA15-16 LINE L1 -3388 3461 2763 23 33 0 0 chr13 31452636 31452666 -88292232 + AT_rich Low_complexity Low_complexity 1 30 0 400 273 82 31 chr13 31453469 31453663 -88291235 + L1MEd LINE L1 606 809 -5310 26 0 0 0 chr13 31454582 31454608 -88290290 + AT_rich Low_complexity Low_complexity 1 26 0 2260 120 0 7 chr13 31454702 31455011 -88289887 + AluSx SINE Alu 1 307 -5 346 318 72 63 chr13 31455140 31455458 -88289440 + HAL1 LINE L1 1214 1534 -973 474 286 143 6 chr13 31455708 31456030 -88288868 + L1MEd LINE L1 2242 2607 -3522 628 281 151 87 chr13 31456288 31457249 -88287649 + L1MEd LINE L1 3042 4063 -2066 26 30 0 0 chr13 31457292 31457325 -88287573 + AT_rich Low_complexity Low_complexity 1 33 0 2547 128 21 19 chr13 31457328 31457750 -88287148 - L1PB3 LINE L1 -7 6147 5725 602 285 84 57 chr13 31457984 31458182 -88286716 + L1MEd LINE L1 4380 4571 -1558 1700 172 44 0 chr13 31458182 31458479 -88286419 + AluJb SINE Alu 1 310 -2 602 285 84 57 chr13 31458479 31458910 -88285988 + L1MEd LINE L1 4571 4989 -1140 2475 71 7 0 chr13 31458910 31459219 -88285679 + AluY SINE Alu 1 311 0 602 285 84 57 chr13 31459219 31459327 -88285571 + L1MEd LINE L1 4989 5093 -1036 2843 148 41 36 chr13 31459327 31459677 -88285221 + L1MA4 LINE L1 5710 6066 -234 2016 121 10 3 chr13 31459677 31459975 -88284923 - AluSx SINE Alu -8 304 5 2843 148 41 36 chr13 31459975 31460212 -88284686 + L1MA4 LINE L1 6066 6300 0 602 285 84 57 chr13 31460212 31460273 -88284625 + L1MEd LINE L1 5093 5201 -928 339 181 236 0 chr13 31460337 31460409 -88284489 + Tigger5 DNA MER2_type 2234 2322 -1 21 0 0 0 chr13 31460446 31460467 -88284431 + AT_rich Low_complexity Low_complexity 1 21 0 215 278 133 11 chr13 31462128 31462218 -88282680 - MER91C DNA MER1_type -38 102 2 275 241 89 27 chr13 31463013 31463125 -88281773 + L1MC5 LINE L1 7799 7917 -44 1563 193 0 37 chr13 31463832 31464128 -88280770 - AluJb SINE Alu -27 285 1 354 272 53 35 chr13 31464737 31464851 -88280047 - L2 LINE L2 -1 3271 3156 243 301 0 14 chr13 31465972 31466045 -88278853 + (TA)n Simple_repeat Simple_repeat 1 72 0 2149 178 47 34 chr13 31466047 31466514 -88278384 - MLT2B2 LTR ERVL -39 476 4 229 261 145 0 chr13 31467099 31467168 -88277730 + L2 LINE L2 3179 3257 -15 1770 151 13 20 chr13 31467415 31467713 -88277185 - AluSx SINE Alu -16 296 1 185 324 14 0 chr13 31468312 31468383 -88276515 - L2 LINE L2 -313 2959 2888 257 299 16 136 chr13 31468418 31468602 -88276296 + MER5B DNA MER1_type 10 171 -7 2441 68 0 3 chr13 31470250 31470557 -88274341 + AluY SINE Alu 1 306 -5 30 83 0 0 chr13 31470870 31470942 -88273956 + AT_rich Low_complexity Low_complexity 1 72 0 858 238 76 39 chr13 31471484 31471841 -88273057 + L1MC5 LINE L1 7166 7535 -426 502 151 0 43 chr13 31472681 31472774 -88272124 - FLAM_C SINE Alu -8 135 47 1714 108 13 0 chr13 31473000 31473231 -88271667 + AluSp SINE Alu 44 277 -36 195 114 0 0 chr13 31473240 31473275 -88271623 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 226 263 15 86 chr13 31473275 31473473 -88271425 - HAL1 LINE L1 -566 1941 1758 303 49 0 0 chr13 31473480 31473521 -88271377 + (TG)n Simple_repeat Simple_repeat 2 42 0 694 237 43 61 chr13 31473541 31473820 -88271078 - HAL1 LINE L1 -1446 1061 788 1084 259 171 36 chr13 31473825 31474380 -88270518 - HAL1 LINE L1 -1637 870 241 293 195 0 6 chr13 31474389 31474452 -88270446 - FLAM_A SINE Alu -7 126 75 2190 95 0 10 chr13 31474941 31475237 -88269661 + AluSx SINE Alu 1 293 -19 911 186 54 14 chr13 31475388 31475609 -88269289 - MER20B DNA MER1_type -1 782 553 1789 221 93 41 chr13 31475856 31476417 -88268481 - L1ME2 LINE L1 -121 6043 5454 2001 113 28 7 chr13 31476618 31476909 -88267989 - AluSx SINE Alu -15 297 1 2154 122 3 0 chr13 31476916 31477220 -88267678 - AluSp SINE Alu -8 305 1 22 35 0 0 chr13 31477422 31477451 -88267447 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr13 31477681 31477725 -88267173 + AT_rich Low_complexity Low_complexity 1 44 0 197 271 224 28 chr13 31478144 31478251 -88266647 + L2 LINE L2 3138 3265 -7 2195 103 0 3 chr13 31478432 31478722 -88266176 + AluY SINE Alu 1 289 -22 1698 167 21 0 chr13 31479258 31479540 -88265358 - AluJo SINE Alu -24 288 1 1712 154 28 18 chr13 31480102 31480387 -88264511 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr13 31481280 31481301 -88263597 + AT_rich Low_complexity Low_complexity 1 21 0 600 203 42 0 chr13 31483047 31483165 -88261733 + MER58B DNA MER1_type 216 338 -3 399 296 59 7 chr13 31483178 31483313 -88261585 - MIR SINE MIR -112 150 9 379 216 207 0 chr13 31483362 31483473 -88261425 + MER104 DNA Tc2 47 180 0 202 222 0 0 chr13 31484773 31484809 -88260089 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 272 248 96 25 chr13 31484821 31485019 -88259879 - L1ME3A LINE L1 -220 5950 5739 726 267 11 11 chr13 31485143 31485319 -88259579 - MER5B DNA MER1_type -1 177 2 307 275 162 6 chr13 31485320 31485557 -88259341 - L1ME3A LINE L1 -515 5649 5367 243 0 0 0 chr13 31486016 31486043 -88258855 + (T)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chr13 31487259 31487291 -88257607 + AT_rich Low_complexity Low_complexity 1 32 0 1202 193 106 23 chr13 31491324 31491588 -88253310 - AluJo SINE Alu -16 286 1 2029 75 8 8 chr13 31492353 31492620 -88252278 - AluSg1 SINE Alu -9 300 34 30 69 0 0 chr13 31493271 31493329 -88251569 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr13 31493531 31493568 -88251330 + AT_rich Low_complexity Low_complexity 1 37 0 757 274 102 6 chr13 31493678 31494021 -88250877 - L1ME4a LINE L1 -264 5857 5482 387 253 140 26 chr13 31494077 31494375 -88250523 - L1ME4a LINE L1 -738 5426 5086 380 300 40 25 chr13 31494413 31494575 -88250323 + MER5A DNA MER1_type 1 179 -10 386 329 75 32 chr13 31494592 31494872 -88250026 - L1ME4a LINE L1 -1125 5021 4730 207 186 0 0 chr13 31495197 31495240 -88249658 + (CA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr13 31495394 31495418 -88249480 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 31495728 31495756 -88249142 + AT_rich Low_complexity Low_complexity 1 28 0 601 287 111 9 chr13 31497063 31497279 -88247619 - MIR SINE MIR -21 241 4 2024 133 7 3 chr13 31497776 31498070 -88246828 - AluSx SINE Alu -17 295 1 263 86 0 0 chr13 31498086 31498121 -88246777 - U2 snRNA snRNA -153 35 1 316 293 96 30 chr13 31498434 31498601 -88246297 - L1ME4a LINE L1 -1726 4420 4243 1540 179 51 4 chr13 31499292 31499565 -88245333 - AluJo SINE Alu -24 288 3 2289 95 0 0 chr13 31499596 31499927 -88244971 + AluSx SINE Alu 1 331 0 21 0 0 0 chr13 31501022 31501043 -88243855 + AT_rich Low_complexity Low_complexity 1 21 0 271 171 43 29 chr13 31501117 31501187 -88243711 - L1ME4a LINE L1 -201 5920 5850 379 234 186 14 chr13 31501245 31501390 -88243508 + MIR SINE MIR 67 236 -26 2184 188 14 55 chr13 31501454 31501960 -88242938 + MER66B LTR ERV1 2 486 0 541 287 120 29 chr13 31501965 31502359 -88242539 - L1ME4a LINE L1 -357 5764 5321 256 212 66 88 chr13 31502839 31502976 -88241922 - L1 LINE L1 -1107 5039 4906 22 35 0 0 chr13 31503004 31503033 -88241865 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr13 31503280 31503324 -88241574 + AT_rich Low_complexity Low_complexity 1 44 0 2093 108 26 23 chr13 31504585 31504890 -88240008 - AluSx SINE Alu -6 306 1 2025 130 0 0 chr13 31504981 31505258 -88239640 - AluSx SINE Alu -35 277 1 229 246 16 16 chr13 31505350 31505411 -88239487 + (TATG)n Simple_repeat Simple_repeat 2 62 0 602 269 64 6 chr13 31505467 31505638 -88239260 - MIR SINE MIR -57 205 25 25 0 0 0 chr13 31506032 31506057 -88238841 + AT_rich Low_complexity Low_complexity 1 25 0 7951 90 35 26 chr13 31507490 31508715 -88236183 - MER11B LTR ERVK 0 1236 1 366 314 37 16 chr13 31508733 31508924 -88235974 + HAL1b LINE L1 395 589 -759 7015 64 13 53 chr13 31509225 31511307 -88233591 + SVA Other Other 1 1385 -1 23 0 0 0 chr13 31511313 31511336 -88233562 + AT_rich Low_complexity Low_complexity 1 23 0 339 293 94 45 chr13 31511560 31511756 -88233142 + L1ME LINE L1 3741 3926 -2220 2470 58 0 0 chr13 31511756 31512050 -88232848 - AluY SINE Alu -17 294 1 339 293 94 45 chr13 31512050 31512297 -88232601 + L1ME LINE L1 3926 4194 -1952 201 74 0 0 chr13 31512769 31512796 -88232102 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1775 180 0 0 chr13 31512799 31513083 -88231815 - AluJb SINE Alu -28 284 1 188 333 100 22 chr13 31513172 31513262 -88231636 - L2 LINE L2 -35 3237 3141 1676 164 3 33 chr13 31513393 31513698 -88231200 - AluSx SINE Alu -16 296 1 350 233 98 30 chr13 31513905 31514038 -88230860 + L1ME LINE L1 5536 5677 -444 366 263 12 0 chr13 31514093 31514173 -88230725 + Tigger3(Golem) DNA MER2_type 2 82 -2947 193 0 94 0 chr13 31514199 31514231 -88230667 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 8482 49 5 222 chr13 31514236 31515979 -88228919 - SVA Other Other -1 1385 21 1684 137 59 0 chr13 31515983 31516253 -88228645 + Tigger3(Golem) DNA MER2_type 2743 3028 -1 286 287 58 0 chr13 31516537 31516624 -88228274 - LTR50 LTR ERVL -703 92 1 337 178 117 84 chr13 31516831 31517023 -88227875 + HAL1b LINE L1 1163 6120 -1 485 247 56 28 chr13 31517480 31517658 -88227240 - L1MC5 LINE L1 -50 7980 7798 1250 170 32 36 chr13 31517717 31517970 -88226928 - AluJo SINE Alu -12 300 49 2349 246 127 51 chr13 31517978 31518172 -88226726 - L1MC5 LINE L1 -385 7645 7467 1855 149 16 3 chr13 31518172 31518480 -88226418 - AluJb SINE Alu 0 312 1 2349 246 127 51 chr13 31518480 31520199 -88224699 - L1MC5 LINE L1 -563 7467 5550 445 259 18 24 chr13 31520196 31520366 -88224532 - L1MC5 LINE L1 -3742 2473 2305 * 754 200 39 19 chr13 31520366 31520521 -88224377 + FRAM SINE Alu 1 155 -21 29 0 0 0 chr13 31520522 31520551 -88224347 + AT_rich Low_complexity Low_complexity 1 29 0 461 158 110 16 chr13 31520605 31520732 -88224166 - L1MC5 LINE L1 -4078 2318 2180 2019 251 85 50 chr13 31520788 31521933 -88222965 - L1MC5 LINE L1 -4370 2026 842 1121 265 78 52 chr13 31521933 31522469 -88222429 - L1MC5 LINE L1 -5825 571 22 9634 87 5 4 chr13 31522547 31524673 -88220225 - L1PA8 LINE L1 -18 6154 4027 348 278 126 63 chr13 31524963 31525186 -88219712 + L2 LINE L2 2962 3198 -115 24 0 0 0 chr13 31525521 31525545 -88219353 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 31526294 31526318 -88218580 + AT_rich Low_complexity Low_complexity 1 24 0 264 30 0 0 chr13 31527586 31527619 -88217279 + (CA)n Simple_repeat Simple_repeat 2 34 0 2024 128 3 0 chr13 31527623 31527911 -88216987 - AluSx SINE Alu -7 305 17 553 271 139 28 chr13 31528053 31528456 -88216442 - MLT1J2 LTR MaLR -2 444 1 24 91 0 0 chr13 31528626 31528692 -88216206 + AT_rich Low_complexity Low_complexity 1 66 0 234 200 42 42 chr13 31529467 31529562 -88215336 - L1MDa LINE L1 -3998 2217 2123 324 340 52 37 chr13 31529571 31529762 -88215136 - L1MDa LINE L1 -4273 2123 1930 554 322 57 13 chr13 31529848 31530326 -88214572 - L1MDa LINE L1 -4640 1756 1258 597 325 43 9 chr13 31531536 31531881 -88213017 - L1ME3A LINE L1 -219 5951 5595 512 233 42 130 chr13 31532223 31532276 -88212622 - L1 LINE L1 -942 5204 5148 2110 114 0 7 chr13 31532276 31532575 -88212323 - AluSx SINE Alu -15 297 1 512 233 42 130 chr13 31532575 31532852 -88212046 - L1 LINE L1 -998 5148 4903 339 269 171 17 chr13 31533744 31533978 -88210920 - HAL1 LINE L1 -910 1597 1328 24 32 0 0 chr13 31535078 31535109 -88209789 + AT_rich Low_complexity Low_complexity 1 31 0 387 0 0 0 chr13 31535301 31535344 -88209554 + (TG)n Simple_repeat Simple_repeat 2 44 0 722 233 33 74 chr13 31536793 31537063 -88207835 + MIR SINE MIR 3 261 -1 30 27 0 0 chr13 31537565 31537602 -88207296 + AT_rich Low_complexity Low_complexity 1 37 0 760 298 4 26 chr13 31537659 31537887 -88207011 + MIR SINE MIR 12 234 -28 1781 164 42 8 chr13 31539116 31539469 -88205429 - MLT1A1 LTR MaLR 0 365 1 3185 174 24 35 chr13 31539889 31540549 -88204349 + MER82 DNA MER2_type 1 653 0 904 80 0 0 chr13 31541094 31541207 -88203691 + AluSg/x SINE Alu 186 298 -11 23 68 0 0 chr13 31543065 31543109 -88201789 + AT_rich Low_complexity Low_complexity 1 44 0 292 341 56 8 chr13 31543131 31543257 -88201641 - L2 LINE L2 -4 3268 3137 2180 100 0 0 chr13 31544162 31544443 -88200455 - AluSx SINE Alu -31 281 1 351 0 0 0 chr13 31544449 31544488 -88200410 + (TG)n Simple_repeat Simple_repeat 2 40 0 5635 115 40 7 chr13 31544493 31545460 -88199438 - L1PA15 LINE L1 -20 6145 5151 1487 117 23 39 chr13 31545760 31546017 -88198881 + Tigger7 DNA MER2_type 2239 2491 0 288 361 107 50 chr13 31546017 31546355 -88198543 - L2 LINE L2 -6 3266 2910 415 195 11 17 chr13 31546426 31546534 -88198364 - AluJb SINE Alu -112 190 122 335 320 157 28 chr13 31547606 31547931 -88196967 + L2 LINE L2 2424 2790 -524 576 306 73 7 chr13 31548203 31548422 -88196476 + MIR SINE MIR 33 262 0 276 313 12 12 chr13 31548485 31548565 -88196333 + L2 LINE L2 3220 3299 -14 243 179 0 0 chr13 31549371 31549438 -88195460 + T-rich Low_complexity Low_complexity 1 67 0 2054 108 0 26 chr13 31550440 31550745 -88194153 + AluSx SINE Alu 1 297 -15 212 184 0 0 chr13 31551646 31551684 -88193214 + T-rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 31552736 31552758 -88192140 + AT_rich Low_complexity Low_complexity 1 22 0 2364 49 18 0 chr13 31553568 31553854 -88191044 - AluY SINE Alu -20 291 1 302 283 117 7 chr13 31554570 31554715 -88190183 + L1MC4a LINE L1 5735 5895 -1913 4551 118 34 10 chr13 31554944 31555731 -88189167 - L1PA16 LINE L1 -2 6164 5321 1305 270 73 74 chr13 31556719 31557039 -88187859 - L2 LINE L2 -423 2891 2572 576 168 0 18 chr13 31557039 31557152 -88187746 - HY1 scRNA scRNA -1 111 1 1305 270 73 74 chr13 31557152 31557547 -88187351 - L2 LINE L2 -742 2572 2177 476 289 34 44 chr13 31557562 31557766 -88187132 - L2 LINE L2 -20 3293 3092 24 53 0 0 chr13 31557864 31557902 -88186996 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr13 31558211 31558240 -88186658 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr13 31558288 31558309 -88186589 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 238 167 17 17 chr13 31558451 31558511 -88186387 + T-rich Low_complexity Low_complexity 5 64 0 1825 143 7 0 chr13 31559194 31559497 -88185401 - AluSx SINE Alu 0 308 4 191 342 154 0 chr13 31559648 31559765 -88185133 - L3 LINE CR1 -11 1566 1432 21 57 0 0 chr13 31560265 31560300 -88184598 + AT_rich Low_complexity Low_complexity 1 35 0 349 310 29 56 chr13 31560670 31561011 -88183887 + L1M4 LINE L1 3809 4140 -2006 1638 140 20 98 chr13 31561687 31562093 -88182805 - MLT1A2 LTR MaLR 0 374 1 2222 106 13 0 chr13 31562116 31562419 -88182479 + AluSx SINE Alu 4 310 -2 2168 70 0 70 chr13 31562419 31562734 -88182164 + AluY SINE Alu 1 294 -17 250 292 162 26 chr13 31565566 31565720 -88179178 - L3b LINE CR1 -139 1444 1270 246 244 171 0 chr13 31565893 31565975 -88178923 - L2 LINE L2 -17 3296 3201 273 303 175 52 chr13 31566345 31566556 -88178342 - L2 LINE L2 -706 2608 2372 1985 136 3 7 chr13 31567406 31567701 -88177197 - AluSx SINE Alu -18 294 1 198 0 0 0 chr13 31568696 31568718 -88176180 + (T)n Simple_repeat Simple_repeat 1 22 0 222 118 0 0 chr13 31570938 31570972 -88173926 + (T)n Simple_repeat Simple_repeat 1 34 0 668 243 43 51 chr13 31571911 31572166 -88172732 - L2 LINE L2 0 3313 3061 968 275 96 8 chr13 31572173 31572759 -88172139 - L1MEc LINE L1 -3692 2848 2252 482 271 103 47 chr13 31572884 31573259 -88171639 - L1MEc LINE L1 -4812 1774 1333 1888 118 43 11 chr13 31573259 31573539 -88171359 + AluSx SINE Alu 7 295 -17 482 271 103 47 chr13 31573539 31573645 -88171253 - L1MEc LINE L1 -5253 1333 1234 1124 317 66 22 chr13 31574047 31574706 -88170192 - L2 LINE L2 -231 3082 2387 397 329 176 10 chr13 31574933 31575246 -88169652 + L2 LINE L2 2329 2693 -621 192 77 0 0 chr13 31575273 31575299 -88169599 + (CAG)n Simple_repeat Simple_repeat 1 26 0 1756 143 61 7 chr13 31575758 31576052 -88168846 - AluSx SINE Alu -2 310 1 309 340 174 14 chr13 31576364 31576646 -88168252 - L1 LINE L1 -2275 3871 3545 531 169 123 8 chr13 31577237 31577367 -88167531 + MER104 DNA Tc2 27 171 -9 454 281 113 65 chr13 31577373 31577683 -88167215 - L1ME2 LINE L1 -332 5832 5508 448 311 113 40 chr13 31577714 31578218 -88166680 - L1ME2 LINE L1 -1170 4976 4436 583 296 180 11 chr13 31578390 31578863 -88166035 - L1 LINE L1 -2690 3456 2904 238 321 121 5 chr13 31579182 31579397 -88165501 - L1 LINE L1 -3595 2551 2312 1528 122 18 0 chr13 31580534 31580756 -88164142 - AluSx SINE Alu -18 292 67 458 103 0 0 chr13 31580789 31580857 -88164041 - AluSx SINE Alu -245 68 1 325 293 24 10 chr13 31581053 31581168 -88163730 + MIR SINE MIR 43 161 -63 1679 197 0 13 chr13 31581870 31582180 -88162718 - AluJo SINE Alu -4 308 3 452 257 46 4 chr13 31583538 31583725 -88161173 + MIR SINE MIR 1 259 -3 1232 215 158 48 chr13 31583737 31584179 -88160719 - L2 LINE L2 -419 2895 2405 1963 129 11 7 chr13 31585656 31585943 -88158955 - AluJo SINE Alu -14 298 11 489 273 195 0 chr13 31586190 31586344 -88158554 + MER5A DNA MER1_type 6 189 0 633 291 94 5 chr13 31586492 31586695 -88158203 - MIR SINE MIR -14 248 28 194 289 0 0 chr13 31587021 31587066 -88157832 + L2 LINE L2 3261 3305 -8 2022 261 65 35 chr13 31587112 31587383 -88157515 + L2 LINE L2 2329 2590 -723 2012 138 48 75 chr13 31587383 31587782 -88157116 - MLT1B LTR MaLR -2 388 1 2022 261 65 35 chr13 31587782 31588459 -88156439 + L2 LINE L2 2590 3313 0 353 297 18 27 chr13 31588459 31588570 -88156328 - MIR SINE MIR -63 145 36 2230 110 0 10 chr13 31588684 31588985 -88155913 - AluSp SINE Alu -15 298 1 28 61 0 0 chr13 31589145 31589194 -88155704 + AT_rich Low_complexity Low_complexity 1 49 0 842 209 221 8 chr13 31589318 31589571 -88155327 - HAL1 LINE L1 -607 1900 1594 407 256 23 16 chr13 31591658 31591787 -88153111 + L1ME4a LINE L1 5725 5854 -267 332 197 15 0 chr13 31591795 31591861 -88153037 - MER116 DNA Mariner -12 68 2 400 173 90 0 chr13 31591956 31592048 -88152850 - MIR SINE MIR -49 213 115 2419 98 0 0 chr13 31592634 31592941 -88151957 + AluSx SINE Alu 1 307 -5 468 78 31 0 chr13 31593437 31593501 -88151397 + L1MB8 LINE L1 6104 6169 -9 223 197 0 30 chr13 31593502 31593568 -88151330 + (TA)n Simple_repeat Simple_repeat 1 64 0 748 309 70 25 chr13 31593641 31594169 -88150729 + L1ME2 LINE L1 4483 5034 -1112 2534 66 0 0 chr13 31594174 31594476 -88150422 + AluY SINE Alu 1 302 -9 1189 172 29 10 chr13 31594480 31594689 -88150209 + AluJb SINE Alu 86 298 -14 952 270 105 6 chr13 31594690 31595318 -88149580 + L1ME2 LINE L1 5036 5722 -448 344 204 59 22 chr13 31595330 31595447 -88149451 + L1ME2 LINE L1 5844 5962 -208 226 220 0 0 chr13 31595470 31595520 -88149378 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 3674 147 22 48 chr13 31596360 31597482 -88147416 + L1MA9 LINE L1 4676 5793 -519 242 202 47 8 chr13 31597485 31597614 -88147284 + (TA)n Simple_repeat Simple_repeat 1 134 0 3127 138 38 4 chr13 31597625 31598132 -88146766 + L1MA9 LINE L1 5789 6312 0 321 100 0 0 chr13 31598293 31598343 -88146555 + (TC)n Simple_repeat Simple_repeat 2 51 0 543 30 69 20 chr13 31599578 31599679 -88145219 + GA-rich Low_complexity Low_complexity 2 107 0 1703 74 0 5 chr13 31599882 31600097 -88144801 + AluY SINE Alu 83 296 -15 281 317 20 0 chr13 31600121 31600222 -88144676 + MIR3 SINE MIR 77 179 -29 495 222 152 33 chr13 31601011 31601248 -88143650 - MLT1L LTR MaLR -4 597 349 225 0 0 0 chr13 31601287 31601312 -88143586 + (TG)n Simple_repeat Simple_repeat 2 26 0 3774 183 105 15 chr13 31602414 31602746 -88142152 - L1MB7 LINE L1 -30 6154 5853 2255 194 48 34 chr13 31602746 31603141 -88141757 - MLT1D LTR MaLR 0 505 100 1312 196 45 31 chr13 31603141 31603427 -88141471 + AluJb SINE Alu 1 290 -22 2255 194 48 34 chr13 31603427 31603527 -88141371 - MLT1D LTR MaLR -405 100 3 3774 183 105 15 chr13 31603527 31603722 -88141176 - L1MB7 LINE L1 -331 5853 5677 195 42 0 0 chr13 31603722 31603746 -88141152 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1944 61 20 4 chr13 31603746 31603991 -88140907 - AluY SINE Alu -32 279 31 3774 183 105 15 chr13 31603991 31604436 -88140462 - L1MB7 LINE L1 -506 5678 5093 2220 114 10 3 chr13 31604527 31604834 -88140064 + AluSc SINE Alu 1 309 0 347 167 50 0 chr13 31606972 31607032 -88137866 - U6 snRNA snRNA -44 63 1 671 289 72 30 chr13 31607101 31607426 -88137472 + L2 LINE L2 2692 3022 -291 1267 167 83 34 chr13 31607426 31607690 -88137208 + AluJo SINE Alu 1 277 -35 222 62 0 0 chr13 31607695 31607727 -88137171 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4235 127 51 9 chr13 31607799 31608466 -88136432 - L1PA16 LINE L1 0 6166 5472 412 316 120 45 chr13 31608651 31608917 -88135981 + L1MA9 LINE L1 1493 1778 -5390 5394 179 43 46 chr13 31609001 31609492 -88135406 + L1MA9 LINE L1 3131 3622 -3711 1756 89 31 9 chr13 31609492 31609716 -88135182 + MER30 DNA MER1_type 2 230 0 5394 179 43 46 chr13 31609716 31611302 -88133596 + L1MA9 LINE L1 3622 5211 -2122 2192 82 67 0 chr13 31611302 31611584 -88133314 - AluSc SINE Alu -8 301 1 5394 179 43 46 chr13 31611584 31612848 -88132050 + L1MA9 LINE L1 5211 7214 -119 2009 118 14 0 chr13 31612848 31613166 -88131732 - AluSq SINE Alu 0 322 1 5394 179 43 46 chr13 31613166 31613286 -88131612 + L1MA9 LINE L1 7214 7333 0 183 42 0 0 chr13 31613567 31613591 -88131307 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 28 0 0 0 chr13 31613651 31613679 -88131219 + AT_rich Low_complexity Low_complexity 1 28 0 262 324 68 34 chr13 31613716 31613892 -88131006 - MIR SINE MIR -61 201 20 2187 111 3 10 chr13 31613957 31614255 -88130643 - AluSq SINE Alu -13 300 5 247 215 75 54 chr13 31614270 31614363 -88130535 - MARNA DNA Mariner -374 212 118 2214 92 3 30 chr13 31614461 31614764 -88130134 + AluSg SINE Alu 1 295 -15 241 0 0 0 chr13 31615762 31615789 -88129109 - AluY SINE Alu -257 42 16 676 198 64 43 chr13 31616131 31616318 -88128580 - MIR SINE MIR -2 260 70 207 146 0 0 chr13 31616409 31616450 -88128448 + (TG)n Simple_repeat Simple_repeat 1 41 0 287 194 167 111 chr13 31616456 31616564 -88128334 + L2 LINE L2 3156 3269 -3 413 209 22 14 chr13 31617235 31617374 -88127524 + (TATATG)n Simple_repeat Simple_repeat 1 140 0 * 765 189 0 0 chr13 31617340 31617509 -88127389 + (TG)n Simple_repeat Simple_repeat 2 170 0 632 210 115 0 chr13 31618162 31618319 -88126579 + MER104 DNA MER2_type 5 179 -1 196 289 75 44 chr13 31618415 31618574 -88126324 + L2 LINE L2 2890 3053 -219 453 112 11 56 chr13 31618858 31618947 -88125951 - L1MA10 LINE L1 0 6334 6250 1233 129 78 0 chr13 31619049 31619242 -88125656 - MER2 DNA MER2_type -135 210 3 3291 144 78 93 chr13 31619242 31619773 -88125125 + LTR8 LTR ERV1 1 521 -170 2185 132 0 0 chr13 31619773 31620083 -88124815 + AluSx SINE Alu 3 312 0 3291 144 78 93 chr13 31620083 31620252 -88124646 + LTR8 LTR ERV1 521 691 0 2986 146 111 49 chr13 31620252 31620821 -88124077 + HUERS-P1 LTR ERV1 1 533 -5730 321 68 0 0 chr13 31620821 31620865 -88124033 + (TG)n Simple_repeat Simple_repeat 1 44 0 2986 146 111 49 chr13 31620865 31621389 -88123509 + HUERS-P1 LTR ERV1 533 1246 -5017 1168 158 8 66 chr13 31621455 31621696 -88123202 - LTR8 LTR ERV1 -460 231 5 236 243 114 0 chr13 31621700 31621770 -88123128 - L1MA10 LINE L1 -88 6246 6169 2294 91 7 3 chr13 31621937 31622233 -88122665 + AluSq SINE Alu 1 297 -16 2034 103 156 16 chr13 31622758 31623264 -88121634 - MER4B LTR ERV1 0 694 1 530 267 188 19 chr13 31624269 31624655 -88120243 - L2 LINE L2 -49 3264 2770 2830 254 67 18 chr13 31624726 31625691 -88119207 - L1ME3A LINE L1 -5 6234 5219 5673 230 41 26 chr13 31625733 31625795 -88119103 - L1MEc LINE L1 -2489 3726 3666 2061 143 3 3 chr13 31625795 31626102 -88118796 - AluSx SINE Alu -1 311 5 5673 230 41 26 chr13 31626102 31627901 -88116997 - L1MEc LINE L1 -2549 3666 1881 745 141 16 0 chr13 31628054 31628182 -88116716 + HSMAR2 DNA Mariner 2 131 -1171 * 5941 139 21 12 chr13 31628179 31629130 -88115768 + HSMAR2 DNA Mariner 343 1302 0 350 310 121 41 chr13 31629306 31629596 -88115302 + L2 LINE L2 2059 2371 -943 1068 118 27 43 chr13 31629853 31630040 -88114858 + MER20 DNA MER1_type 36 219 0 444 245 7 53 chr13 31630053 31630151 -88114747 - MER69 DNA AcHobo -1 2525 2435 2196 117 0 3 chr13 31630151 31630460 -88114438 - AluSx SINE Alu -4 308 1 444 245 7 53 chr13 31630460 31630512 -88114386 - MER69 DNA AcHobo -91 2435 2382 * 2031 172 5 33 chr13 31630477 31630844 -88114054 - MLT1A1 LTR MaLR -8 357 1 363 169 0 0 chr13 31631016 31631075 -88113823 - MER69 DNA AcHobo -2467 59 1 279 224 0 0 chr13 31631183 31631259 -88113639 + (TG)n Simple_repeat Simple_repeat 2 77 0 1859 163 7 0 chr13 31633045 31633346 -88111552 - AluSx SINE Alu -9 303 1 540 208 24 24 chr13 31633454 31633614 -88111284 - MER5A DNA MER1_type -25 153 3 2000 133 3 23 chr13 31634180 31634518 -88110380 - AluSx SINE Alu 0 312 1 210 261 0 0 chr13 31635603 31635649 -88109249 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 1865 131 68 18 chr13 31635659 31635996 -88108902 + MER46B DNA MER2_type 2 230 -6 294 73 0 0 chr13 31635998 31636039 -88108859 + (TG)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr13 31636074 31636098 -88108800 + (CA)n Simple_repeat Simple_repeat 1 24 0 1791 250 110 20 chr13 31636189 31636733 -88108165 + MLT1E LTR MaLR 1 593 0 2672 120 5 10 chr13 31636736 31637144 -88107754 - MER65A LTR ERV1 0 445 40 1256 87 46 25 chr13 31637158 31637354 -88107544 - MSTA LTR MaLR -228 200 1 240 154 0 0 chr13 31637647 31637686 -88107212 - MER65B LTR ERV1 -492 39 1 2125 129 7 7 chr13 31638054 31638364 -88106534 - AluSp SINE Alu -3 310 1 1736 162 7 33 chr13 31638573 31638875 -88106023 + AluJo SINE Alu 6 299 -13 533 324 45 11 chr13 31638976 31639293 -88105605 - L2 LINE L2 -26 3246 2919 2000 93 3 64 chr13 31640751 31641062 -88103836 - AluSc SINE Alu -17 292 1 2258 116 3 7 chr13 31641404 31641714 -88103184 - AluSx SINE Alu -3 309 1 2273 110 0 3 chr13 31642304 31642605 -88102293 + AluSx SINE Alu 1 300 -12 281 228 22 11 chr13 31643954 31644046 -88100852 + MIR3 SINE MIR 109 201 -7 258 361 93 39 chr13 31645115 31645425 -88099473 - L2 LINE L2 -1 3271 2945 1057 273 54 97 chr13 31645565 31646217 -88098681 + L1MEd LINE L1 8 631 -5488 386 285 153 8 chr13 31646558 31646800 -88098098 + L2 LINE L2 1763 2039 -1275 525 339 56 28 chr13 31646872 31647194 -88097704 + L2 LINE L2 2584 2914 -400 578 242 0 17 chr13 31647275 31647395 -88097503 - FLAM_A SINE Alu -15 127 10 423 228 25 21 chr13 31647433 31647591 -88097307 + L1MC4 LINE L1 7017 7256 -632 432 0 0 0 chr13 31647591 31647639 -88097259 + (TA)n Simple_repeat Simple_repeat 2 49 0 351 0 0 0 chr13 31647656 31647695 -88097203 + (CA)n Simple_repeat Simple_repeat 2 40 0 315 0 0 0 chr13 31647756 31647791 -88097107 + (CA)n Simple_repeat Simple_repeat 2 36 0 336 236 69 34 chr13 31647848 31647971 -88096927 + L1MC4 LINE L1 6507 6644 -1191 1007 236 57 74 chr13 31647981 31648455 -88096443 + L1MC4 LINE L1 7265 7730 -312 724 232 72 55 chr13 31648516 31648861 -88096037 + L1MC4 LINE L1 7691 8041 -1 * 1171 221 26 7 chr13 31648837 31649108 -88095790 + L1MC3 LINE L1 6456 6731 -1054 2473 174 118 32 chr13 31649532 31650101 -88094797 + L1MC3 LINE L1 6716 7333 -452 585 220 66 16 chr13 31650080 31650262 -88094636 + L1MC3 LINE L1 7593 7783 -2 * 416 327 90 18 chr13 31650300 31650523 -88094375 + L2 LINE L2 3031 3269 -3 246 333 36 0 chr13 31650996 31651080 -88093818 + L2 LINE L2 3200 3286 -27 1905 143 34 47 chr13 31651080 31651464 -88093434 + MLT1B LTR MaLR 1 379 -11 211 302 62 0 chr13 31651613 31651709 -88093189 - MER5A DNA MER1_type -79 110 9 22 56 0 0 chr13 31652449 31652485 -88092413 + AT_rich Low_complexity Low_complexity 1 36 0 283 254 45 45 chr13 31654106 31654216 -88090682 + LTR67 LTR ERVL 340 449 -108 184 323 102 62 chr13 31654276 31654598 -88090300 + L2 LINE L2 1658 1992 -1322 237 247 68 14 chr13 31655077 31655150 -88089748 - MLT1J LTR MaLR -340 171 95 438 308 85 48 chr13 31655220 31655701 -88089197 + L2 LINE L2 2010 2508 -806 1935 220 24 15 chr13 31656023 31656198 -88088700 + MLT1C LTR MaLR 1 173 -294 1648 185 50 0 chr13 31656198 31656495 -88088403 + AluJo SINE Alu 1 312 0 1935 220 24 15 chr13 31656495 31656782 -88088116 + MLT1C LTR MaLR 173 467 0 237 302 32 0 chr13 31657063 31657126 -88087772 + L2 LINE L2 3111 3175 -97 183 318 30 0 chr13 31657969 31658035 -88086863 + L2 LINE L2 2992 3059 -213 2542 119 16 0 chr13 31658330 31658699 -88086199 - THE1C LTR MaLR 0 375 1 240 243 87 78 chr13 31658745 31658951 -88085947 + Tigger1 DNA MER2_type 879 1086 -1332 21 0 0 0 chr13 31659244 31659265 -88085633 + AT_rich Low_complexity Low_complexity 1 21 0 3067 78 45 2 chr13 31659305 31659731 -88085167 + MLT2A1 LTR ERVL 1 444 0 576 283 12 23 chr13 31659887 31660060 -88084838 - MER5B DNA MER1_type -7 171 1 1386 196 0 51 chr13 31660093 31660404 -88084494 + AluJo SINE Alu 1 295 -17 420 313 42 10 chr13 31661068 31661260 -88083638 + MIR SINE MIR 11 208 -54 8250 12 0 0 chr13 31661292 31662823 -88082075 - L1HS LINE L1 -1 6154 4624 493 335 28 9 chr13 31662844 31663059 -88081839 + L1MEc LINE L1 503 721 -6104 1562 203 25 30 chr13 31663447 31663811 -88081087 + MLT1A1 LTR MaLR 1 362 -3 1120 287 50 36 chr13 31663881 31664568 -88080330 + L1MEc LINE L1 1024 1660 -4882 1878 260 96 28 chr13 31664600 31665496 -88079402 + L1MEc LINE L1 1994 2950 -3875 336 283 41 7 chr13 31665512 31665657 -88079241 + L1MEc LINE L1 3781 3930 -2714 2166 124 10 0 chr13 31665661 31665967 -88078931 + AluSg SINE Alu 1 309 -1 1493 278 117 34 chr13 31666000 31666644 -88078254 + HERV16 LTR ERVL 596 1292 -3704 5384 242 36 58 chr13 31666804 31667442 -88077456 + HERV16 LTR ERVL 1592 2242 -2754 2251 96 3 0 chr13 31667442 31667733 -88077165 + AluSq SINE Alu 1 292 -21 5384 242 36 58 chr13 31667733 31667865 -88077033 + HERV16 LTR ERVL 2242 2375 -2621 1727 157 34 14 chr13 31667865 31668158 -88076740 + AluJo SINE Alu 5 303 -9 5384 242 36 58 chr13 31668158 31668924 -88075974 + HERV16 LTR ERVL 2375 3096 -1900 534 291 11 6 chr13 31669012 31669187 -88075711 + HERV16 LTR ERVL 5175 5350 -304 704 282 13 21 chr13 31669288 31669620 -88075278 + LTR16A LTR ERVL 18 401 -49 882 300 101 39 chr13 31669750 31670287 -88074611 + HERV16 LTR ERVL 2048 2617 -2379 1542 181 19 4 chr13 31670361 31670626 -88074272 + MLT1A1 LTR MaLR 1 269 -96 402 322 34 7 chr13 31670626 31670772 -88074126 + HERV16 LTR ERVL 2778 2927 -2837 2973 317 63 34 chr13 31670806 31672347 -88072551 + HERV16 LTR ERVL 3224 4808 -956 1422 296 35 19 chr13 31672409 31672892 -88072006 + LTR16C LTR ERVL 1 491 0 702 280 19 56 chr13 31675663 31675807 -88069091 - MIR SINE MIR 0 262 131 2499 88 3 0 chr13 31675807 31676115 -88068783 + AluSg SINE Alu 1 309 -1 702 280 19 56 chr13 31676115 31676238 -88068660 - MIR SINE MIR -131 131 5 217 205 0 0 chr13 31676259 31676298 -88068600 + (CCCA)n Simple_repeat Simple_repeat 4 42 0 267 308 26 0 chr13 31676831 31676909 -88067989 + MIR3 SINE MIR 108 187 -21 529 234 111 18 chr13 31677469 31677640 -88067258 - MIR SINE MIR 0 262 76 1870 127 51 0 chr13 31678081 31678357 -88066541 + AluSx SINE Alu 1 290 -22 876 110 79 6 chr13 31679000 31679164 -88065734 - L1MA6 LINE L1 -4 6296 6121 188 282 214 0 chr13 31679164 31679267 -88065631 + L3 LINE CR1 524 648 -929 28 29 0 0 chr13 31679334 31679369 -88065529 + AT_rich Low_complexity Low_complexity 1 35 0 589 269 115 61 chr13 31679459 31680144 -88064754 - L1MC5 LINE L1 -78 7883 7247 1617 166 26 62 chr13 31680782 31681089 -88063809 - AluJo SINE Alu -16 296 1 1566 174 113 64 chr13 31681267 31681674 -88063224 - MER51A LTR ERV1 0 634 208 1406 238 111 2 chr13 31682637 31683086 -88061812 - MER114 LTR ERV 0 648 151 1002 145 0 0 chr13 31683105 31683257 -88061641 - AluSg/x SINE Alu -12 300 149 2169 314 35 10 chr13 31683359 31684348 -88060550 - ERVL LTR ERVL -1412 4352 3292 1206 299 41 19 chr13 31684367 31684870 -88060028 - ERVL LTR ERVL -1913 3083 2666 576 321 38 52 chr13 31684904 31685465 -88059433 - ERVL LTR ERVL -2639 2357 1969 570 263 47 6 chr13 31685480 31685651 -88059247 + L1MD2 LINE L1 6165 6342 -17 204 67 0 0 chr13 31685766 31685796 -88059102 + (CA)n Simple_repeat Simple_repeat 1 30 0 241 308 87 19 chr13 31687706 31687810 -88057088 - L2 LINE L2 -26 3246 3136 207 0 0 0 chr13 31688024 31688047 -88056851 + (TG)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr13 31688144 31688173 -88056725 + AT_rich Low_complexity Low_complexity 1 29 0 334 365 48 8 chr13 31688201 31688327 -88056571 + L2 LINE L2 3138 3268 -4 1142 251 30 14 chr13 31688398 31688693 -88056205 - MLT1I LTR MaLR -3 406 107 574 182 0 15 chr13 31688925 31689057 -88055841 + CT-rich Low_complexity Low_complexity 2 131 0 1448 172 0 38 chr13 31689063 31689330 -88055568 - AluJo SINE Alu -55 257 1 222 150 0 0 chr13 31689663 31689703 -88055195 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 295 169 185 0 chr13 31690041 31690106 -88054792 + MLT1C LTR MaLR 6 82 -385 3595 136 23 59 chr13 31690107 31690756 -88054142 + L1MA7 LINE L1 5656 6281 -10 496 171 24 81 chr13 31690775 31690898 -88054000 + MLT1C LTR MaLR 67 182 -285 357 62 0 0 chr13 31690903 31690951 -88053947 + (CA)n Simple_repeat Simple_repeat 2 49 0 415 206 11 11 chr13 31691026 31691118 -88053780 + MLT1C LTR MaLR 376 467 0 1085 214 24 36 chr13 31691677 31691929 -88052969 - MIR SINE MIR -3 259 11 279 191 29 0 chr13 31691960 31692028 -88052870 + MER116 DNA Mariner 11 80 0 496 295 9 71 chr13 31692148 31692358 -88052540 + MIR SINE MIR 22 218 -44 2205 128 0 0 chr13 31693230 31693528 -88051370 + AluSx SINE Alu 1 298 -14 1887 201 66 43 chr13 31693632 31694120 -88050778 - MLT1D LTR MaLR -5 500 2 27 62 0 0 chr13 31694544 31694592 -88050306 + AT_rich Low_complexity Low_complexity 1 48 0 225 283 0 0 chr13 31694649 31694709 -88050189 - L1ME4a LINE L1 -88 6033 5974 551 284 148 42 chr13 31694755 31694989 -88049909 + L2 LINE L2 2841 3128 -185 1892 156 70 25 chr13 31694989 31695347 -88049551 - MLT1A2 LTR MaLR 0 374 1 551 284 148 42 chr13 31695347 31695471 -88049427 + L2 LINE L2 3128 3237 -76 303 307 10 10 chr13 31695834 31695935 -88048963 - MIR SINE MIR -74 134 34 1851 183 7 0 chr13 31697092 31697393 -88047505 - AluJo SINE Alu -9 303 1 718 275 160 47 chr13 31697400 31697843 -88047055 + MLT1H LTR MaLR 37 529 -20 336 237 59 44 chr13 31697851 31697986 -88046912 + MER65B LTR ERV1 1 137 -394 777 283 59 110 chr13 31698436 31698826 -88046072 + MLT1L LTR MaLR 110 584 -31 402 287 144 23 chr13 31698905 31699079 -88045819 + MIR3 SINE MIR 7 201 -7 2169 110 10 3 chr13 31700237 31700537 -88044361 - AluSq SINE Alu -11 302 1 240 111 0 0 chr13 31701073 31701118 -88043780 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 2096 115 3 3 chr13 31701369 31701679 -88043219 + AluSq SINE Alu 1 310 0 196 42 0 0 chr13 31701655 31701714 -88043184 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1193 238 161 43 chr13 31702676 31703167 -88041731 - MLT1H LTR MaLR 0 549 1 446 290 129 24 chr13 31705421 31705669 -88039229 - L1ME4a LINE L1 -297 5824 5551 397 219 39 28 chr13 31706260 31706438 -88038460 + (TA)n Simple_repeat Simple_repeat 1 180 0 217 143 44 11 chr13 31706532 31706623 -88038275 + (TA)n Simple_repeat Simple_repeat 1 94 0 207 132 75 0 chr13 31706640 31706693 -88038205 + (TA)n Simple_repeat Simple_repeat 1 57 0 720 170 89 0 chr13 31706699 31706811 -88038087 - FLAM_C SINE Alu -20 123 2 470 316 38 14 chr13 31707984 31708193 -88036705 - MIR SINE MIR -29 233 20 904 218 40 44 chr13 31708372 31708453 -88036445 - MIR SINE MIR -24 238 158 2106 191 8 11 chr13 31708453 31708819 -88036079 - MLT1A1 LTR MaLR 0 365 1 904 218 40 44 chr13 31708819 31708962 -88035936 - MIR SINE MIR -104 158 15 405 273 245 43 chr13 31708979 31709257 -88035641 - L2 LINE L2 -902 2412 2079 183 256 179 36 chr13 31709263 31709458 -88035440 + L2 LINE L2 2465 2687 -627 199 365 56 0 chr13 31710181 31710307 -88034591 + L2 LINE L2 2910 3042 -230 1004 232 76 108 chr13 31710390 31710957 -88033941 + MER34B LTR ERV1 1 542 0 296 347 0 0 chr13 31711026 31711098 -88033800 + L2 LINE L2 3201 3272 0 1721 175 0 14 chr13 31713795 31714087 -88030811 - AluJb SINE Alu -24 288 1 386 300 14 21 chr13 31714193 31714333 -88030565 + MER117 DNA MER1_type 1 139 -58 632 246 97 64 chr13 31715216 31715546 -88029352 - MLT1J LTR MaLR -8 503 163 458 305 37 21 chr13 31715884 31716074 -88028824 + LTR16C LTR ERVL 299 491 0 270 292 50 33 chr13 31716077 31716197 -88028701 - MLT1J LTR MaLR -354 157 36 1654 178 3 32 chr13 31716788 31717102 -88027796 + AluJo SINE Alu 5 309 -3 865 232 217 62 chr13 31717712 31718164 -88026734 - MLT1L LTR MaLR -5 610 89 398 293 115 0 chr13 31718183 31718340 -88026558 + MIR SINE MIR 88 262 0 423 259 127 71 chr13 31718862 31719059 -88025839 + MIR SINE MIR 47 254 -8 9293 233 63 24 chr13 31719142 31720188 -88024710 - L1ME1 LINE L1 -6 6658 5654 1455 201 27 7 chr13 31720188 31720482 -88024416 + AluJo SINE Alu 1 300 -12 9293 233 63 24 chr13 31720482 31721192 -88023706 - L1ME1 LINE L1 -1010 5654 4973 1899 159 21 0 chr13 31721192 31721482 -88023416 - AluJb SINE Alu -16 296 1 9293 233 63 24 chr13 31721482 31722173 -88022725 - L1ME1 LINE L1 -1691 4973 4310 1608 253 46 36 chr13 31722173 31722671 -88022227 + MLT1D LTR MaLR 1 503 -2 9293 233 63 24 chr13 31722671 31723940 -88020958 - L1ME1 LINE L1 -2354 4310 2769 7628 49 7 3 chr13 31723940 31725612 -88019286 - L1PA7 LINE L1 -2 6152 4477 188 133 0 0 chr13 31726113 31726143 -88018755 - MIR SINE MIR -109 153 124 215 304 0 0 chr13 31727280 31727326 -88017572 + L2 LINE L2 3161 3206 -66 411 199 62 85 chr13 31727722 31727898 -88017000 - MER53 DNA DNA 0 189 18 189 333 0 0 chr13 31727909 31727963 -88016935 + MIR SINE MIR 93 146 -62 294 231 15 15 chr13 31728662 31728727 -88016171 - L2 LINE L2 -2 3270 3206 4309 79 70 0 chr13 31728741 31729325 -88015573 - L1PB1 LINE L1 -5 6146 5522 353 77 0 0 chr13 31729573 31729625 -88015273 + FAM SINE Alu 122 173 -2 209 298 60 48 chr13 31729926 31730010 -88014888 + L2 LINE L2 3143 3227 -45 323 328 106 16 chr13 31730118 31730307 -88014591 + MIR SINE MIR 23 228 -34 378 337 66 28 chr13 31731611 31731792 -88013106 + L2 LINE L2 2932 3119 -153 2121 241 30 35 chr13 31731917 31732493 -88012405 - L1ME1 LINE L1 -5688 854 282 611 266 60 22 chr13 31732520 31732704 -88012194 + MLT1L LTR MaLR 43 233 -382 235 221 84 63 chr13 31732731 31732826 -88012072 - MER5A DNA MER1_type -86 103 7 2183 119 0 7 chr13 31732878 31733180 -88011718 + AluSg SINE Alu 1 300 -10 682 272 109 18 chr13 31733190 31733473 -88011425 + MLT1L LTR MaLR 295 603 -12 198 0 0 0 chr13 31733596 31733618 -88011280 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 1120 241 16 4 chr13 31733854 31734103 -88010795 - MER112 DNA MER1_type -1 259 8 278 294 102 99 chr13 31734940 31735283 -88009615 + L2 LINE L2 2913 3256 -16 4823 177 27 29 chr13 31735327 31735894 -88009004 + L1MB3 LINE L1 4838 5405 -778 2096 129 3 0 chr13 31735894 31736188 -88008710 + AluSq SINE Alu 1 295 -18 4823 177 27 29 chr13 31736188 31736968 -88007930 + L1MB3 LINE L1 5405 6183 0 1739 127 35 0 chr13 31737933 31738192 -88006706 + AluSg SINE Alu 36 303 -7 231 241 0 0 chr13 31738299 31738353 -88006545 - MER5B DNA MER1_type -124 54 1 1847 272 118 41 chr13 31738376 31739716 -88005182 - L2 LINE L2 -42 3271 1825 1688 116 8 0 chr13 31739767 31740009 -88004889 - L1MB2 LINE L1 -125 6046 5803 483 33 0 0 chr13 31743134 31743195 -88001703 + (CA)n Simple_repeat Simple_repeat 2 62 0 195 258 318 0 chr13 31743308 31743374 -88001524 - MER5A DNA MER1_type -94 95 9 428 301 30 12 chr13 31744030 31744196 -88000702 - MIR SINE MIR -24 238 70 349 317 20 0 chr13 31744463 31744564 -88000334 + L2 LINE L2 3208 3310 -3 271 258 11 34 chr13 31745066 31745155 -87999743 + MER5A DNA MER1_type 97 183 -6 505 254 14 28 chr13 31745596 31745738 -87999160 - L2 LINE L2 0 3272 3133 396 125 0 0 chr13 31746109 31746173 -87998725 + (GA)n Simple_repeat Simple_repeat 1 64 0 1227 158 171 40 chr13 31746174 31746496 -87998402 - MLT1B LTR MaLR 0 390 27 1350 77 0 22 chr13 31746589 31746770 -87998128 - L1PB1 LINE L1 -1 6150 5974 2355 76 0 7 chr13 31748100 31748404 -87996494 + AluSq SINE Alu 1 302 -11 25 0 0 0 chr13 31748564 31748589 -87996309 + AT_rich Low_complexity Low_complexity 1 25 0 2417 57 17 0 chr13 31748849 31749146 -87995752 - AluY SINE Alu -9 302 1 455 249 37 69 chr13 31749296 31749485 -87995413 + MER5A DNA MER1_type 7 189 0 259 257 162 13 chr13 31749609 31749758 -87995140 - MIR3 SINE MIR -2 206 36 202 359 29 35 chr13 31750253 31750423 -87994475 + L3b LINE CR1 1317 1485 -98 288 363 14 7 chr13 31750550 31750696 -87994202 - ERVL LTR ERVL -765 4999 4853 1739 216 95 31 chr13 31751132 31751553 -87993345 - LTR16A LTR ERVL -2 448 1 1182 308 70 29 chr13 31752175 31752835 -87992063 - ERVL LTR ERVL -867 4787 4102 647 193 20 7 chr13 31752841 31752991 -87991907 + Charlie1 DNA MER1_type 2610 2761 0 342 0 0 0 chr13 31753386 31753424 -87991474 + (TG)n Simple_repeat Simple_repeat 2 39 0 2151 122 0 10 chr13 31753896 31754199 -87990699 + AluSx SINE Alu 1 300 -12 1023 186 41 23 chr13 31756407 31756627 -87988271 - L1MC1 LINE L1 -13 6320 6097 1375 188 16 8 chr13 31756627 31756808 -87988090 - AluJo SINE Alu -3 309 124 8163 21 5 0 chr13 31756808 31757768 -87987130 + L1PA3 LINE L1 5191 6154 -1 1375 188 16 8 chr13 31757768 31757842 -87987056 - AluJo SINE Alu -188 124 52 2347 138 30 51 chr13 31757875 31758309 -87986589 - L1MC1 LINE L1 -227 6106 5682 3079 139 24 6 chr13 31758313 31758808 -87986090 - L1MB3 LINE L1 -1 6182 5679 545 192 8 0 chr13 31758809 31758929 -87985969 + CT-rich Low_complexity Low_complexity 3 123 0 380 148 15 25 chr13 31758944 31759021 -87985877 - L1P5 LINE L1 -478 5676 5605 * 5433 187 50 31 chr13 31759016 31760012 -87984886 - L1MB3 LINE L1 -649 5695 4657 2521 46 3 3 chr13 31760012 31760316 -87984582 - AluY SINE Alu -7 304 1 5433 187 50 31 chr13 31760316 31761093 -87983805 - L1MB3 LINE L1 -1687 4657 3896 805 99 0 0 chr13 31761140 31761241 -87983657 - AluS SINE Alu -211 102 2 1387 247 63 18 chr13 31761272 31761699 -87983199 + LTR51 LTR ERV1 228 842 -81 325 226 75 82 chr13 31762285 31762444 -87982454 + MIR SINE MIR 105 262 0 250 333 11 11 chr13 31762511 31762601 -87982297 + MIR SINE MIR 20 109 -153 508 224 64 26 chr13 31762613 31762769 -87982129 - MER5A DNA MER1_type -21 168 7 218 169 231 0 chr13 31764169 31764234 -87980664 - L2 LINE L2 0 3272 3193 1615 115 77 4 chr13 31764367 31764602 -87980296 - L1PB3 LINE L1 0 6154 5903 193 133 0 0 chr13 31764660 31764690 -87980208 + MIR SINE MIR 158 187 -75 207 209 0 23 chr13 31764957 31765000 -87979898 + CT-rich Low_complexity Low_complexity 4 45 0 1421 134 17 26 chr13 31765992 31766090 -87978808 - MER30 DNA MER1_type 0 230 133 2392 106 0 0 chr13 31766090 31766393 -87978505 - AluSx SINE Alu -9 303 1 1421 134 17 26 chr13 31766393 31766526 -87978372 - MER30 DNA MER1_type -97 133 1 186 43 0 0 chr13 31766607 31766630 -87978268 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1901 94 4 0 chr13 31766940 31767185 -87977713 - AluSx SINE Alu -6 306 61 3908 148 6 16 chr13 31768205 31768849 -87976049 - L1MB3 LINE L1 0 6183 5546 2266 113 3 3 chr13 31768860 31769169 -87975729 - AluSx SINE Alu -3 309 1 1061 250 24 15 chr13 31770551 31770853 -87974045 + MLT2D LTR ERVL 66 366 -48 725 139 20 0 chr13 31770862 31771119 -87973779 + (TG)n Simple_repeat Simple_repeat 1 262 0 923 76 41 0 chr13 31771137 31771309 -87973589 + (TG)n Simple_repeat Simple_repeat 2 180 0 303 130 0 0 chr13 31771329 31771375 -87973523 + MLT2D LTR ERVL 473 518 -2 884 289 141 22 chr13 31771530 31771991 -87972907 - LTR33 LTR ERVL -4 517 2 681 155 84 39 chr13 31772583 31772738 -87972160 + MER96 DNA MER1_type? 14 175 0 318 26 0 0 chr13 31774177 31774216 -87970682 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 0 0 0 chr13 31774265 31774293 -87970605 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr13 31774412 31774465 -87970433 + AT_rich Low_complexity Low_complexity 1 53 0 198 291 25 25 chr13 31775266 31775345 -87969553 - MIR SINE MIR 0 262 184 2439 60 7 0 chr13 31775429 31775727 -87969171 + AluY SINE Alu 1 300 -11 537 271 91 50 chr13 31775780 31776136 -87968762 + L1ME3A LINE L1 5208 5579 -583 325 367 59 23 chr13 31776161 31776466 -87968432 + L1ME3A LINE L1 5625 5940 -230 304 160 0 0 chr13 31777140 31777190 -87967708 - L2 LINE L2 -2 3311 3262 909 337 104 15 chr13 31777190 31777572 -87967326 + L2 LINE L2 2202 2549 -765 1912 134 26 35 chr13 31777572 31777885 -87967013 - AluSx SINE Alu -2 310 1 909 337 104 15 chr13 31777885 31778215 -87966683 + L2 LINE L2 2549 2977 -337 422 276 78 0 chr13 31778258 31778374 -87966524 - L2 LINE L2 0 3313 3189 486 263 26 53 chr13 31778538 31778690 -87966208 + L2 LINE L2 3124 3271 -1 274 270 118 33 chr13 31778832 31778984 -87965914 - L2 LINE L2 -1605 1709 1545 762 216 34 6 chr13 31779064 31779240 -87965658 + MER33 DNA MER1_type 6 186 -138 3709 140 42 32 chr13 31779269 31779891 -87965007 + MER82 DNA MER2_type 25 652 -1 545 190 28 21 chr13 31779891 31780019 -87964879 + MER33 DNA MER1_type 231 359 -4 22 0 0 0 chr13 31782006 31782028 -87962870 + AT_rich Low_complexity Low_complexity 1 22 0 281 211 119 0 chr13 31782784 31782893 -87962005 - L1ME4a LINE L1 0 6121 6000 21 0 0 0 chr13 31783621 31783642 -87961256 + AT_rich Low_complexity Low_complexity 1 21 0 209 302 0 16 chr13 31783721 31783784 -87961114 - MIR3 SINE MIR -8 200 139 2395 180 40 4 chr13 31784102 31784552 -87960346 - MLT1C LTR MaLR 0 467 2 445 198 155 9 chr13 31784615 31784731 -87960167 - MIR SINE MIR -88 174 42 1129 255 81 15 chr13 31784768 31785365 -87959533 - L2 LINE L2 -18 3295 2328 282 242 0 16 chr13 31785573 31785635 -87959263 + L2 LINE L2 3210 3270 -2 1026 190 0 0 chr13 31785708 31785882 -87959016 + AluJo SINE Alu 122 295 -17 291 204 0 0 chr13 31785887 31785936 -87958962 + AluJo SINE Alu 127 175 -127 343 197 0 0 chr13 31787040 31787106 -87957792 - Alu SINE Alu 0 302 237 189 0 0 0 chr13 31787147 31787168 -87957730 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1657 167 0 57 chr13 31787171 31787470 -87957428 - AluJo SINE Alu -30 282 1 22 0 0 0 chr13 31787980 31788002 -87956896 + AT_rich Low_complexity Low_complexity 1 22 0 1230 217 20 23 chr13 31788321 31788443 -87956455 - L1MA4 LINE L1 -5 6295 6174 1740 139 66 11 chr13 31788443 31788871 -87956027 - AluSq SINE Alu 0 444 1 1230 217 20 23 chr13 31788871 31789051 -87955847 - L1MA4 LINE L1 -126 6174 5998 3468 288 176 24 chr13 31789318 31789469 -87955429 - L2 LINE L2 -2 3311 3184 4727 167 57 16 chr13 31789469 31790300 -87954598 - MER6 DNA MER2_type 0 865 1 3468 288 176 24 chr13 31790300 31791300 -87953598 - L2 LINE L2 -129 3184 2338 2636 156 30 26 chr13 31791300 31791730 -87953168 + Tigger2a DNA MER2_type 3 434 0 3468 288 176 24 chr13 31791730 31793064 -87951834 - L2 LINE L2 -975 2338 451 2119 142 0 0 chr13 31793074 31793376 -87951522 - AluSx SINE Alu -10 302 1 309 320 131 8 chr13 31793798 31794057 -87950841 - L2 LINE L2 -645 2669 2379 119 37 0 0 chr13 31794075 31794236 -87950662 + AT_rich Low_complexity Low_complexity 1 161 0 315 276 121 75 chr13 31794411 31794632 -87950266 - L1ME4a LINE L1 -233 5888 5646 951 196 28 0 chr13 31794632 31794811 -87950087 - L1MD1 LINE L1 0 6242 6059 315 276 121 75 chr13 31794811 31794911 -87949987 - L1ME4a LINE L1 -475 5646 5552 239 304 80 64 chr13 31795053 31795303 -87949595 + MLT1J1 LTR MaLR 58 311 -135 785 121 49 197 chr13 31795420 31795684 -87949214 + MLT1A1 LTR MaLR 1 225 -149 579 230 59 0 chr13 31795836 31795988 -87948910 + L2 LINE L2 2448 2608 -706 630 80 0 0 chr13 31796032 31796107 -87948791 + AluY SINE Alu 218 292 -19 1286 249 47 64 chr13 31796149 31796581 -87948317 + L2 LINE L2 2853 3278 -35 1908 209 96 24 chr13 31796581 31797049 -87947849 - MLT1D LTR MaLR -3 502 1 1286 249 47 64 chr13 31797049 31797085 -87947813 + L2 LINE L2 3278 3313 0 599 307 115 16 chr13 31797767 31798011 -87946887 + L3 LINE CR1 1301 1568 -9 285 306 41 27 chr13 31798057 31798204 -87946694 - LTR67 LTR ERVL 0 557 409 525 334 77 13 chr13 31798739 31799305 -87945593 - L1MD1 LINE L1 -755 5391 5176 227 155 14 113 chr13 31801111 31801182 -87943716 - HAL1 LINE L1 -121 2386 2323 455 216 97 15 chr13 31801217 31801351 -87943547 - HAL1 LINE L1 -314 2193 2049 1805 187 62 40 chr13 31801379 31801426 -87943472 - L1MCb LINE L1 -5015 1030 985 285 29 0 0 chr13 31801426 31801460 -87943438 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1805 187 62 40 chr13 31801460 31801834 -87943064 - L1MCb LINE L1 -5060 985 600 460 198 72 27 chr13 31804171 31804282 -87940616 - MER117 DNA MER1_type -3 194 79 927 311 83 11 chr13 31804344 31804788 -87940110 - L2 LINE L2 0 3313 2838 5241 141 21 27 chr13 31804794 31805229 -87939669 + L1MA8 LINE L1 5168 5604 -708 1933 164 0 16 chr13 31805229 31805541 -87939357 + AluJo SINE Alu 1 307 -5 5241 141 21 27 chr13 31805541 31806108 -87938790 + L1MA8 LINE L1 5604 6142 -170 2303 109 3 3 chr13 31806108 31806420 -87938478 - AluSx SINE Alu 0 312 1 5241 141 21 27 chr13 31806420 31806566 -87938332 + L1MA8 LINE L1 6142 6287 -25 180 0 0 0 chr13 31806567 31806587 -87938311 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 204 281 172 0 chr13 31806652 31806716 -87938182 - L2 LINE L2 0 3313 3239 2136 110 3 0 chr13 31807544 31807826 -87937072 + AluSx SINE Alu 1 283 -29 266 210 81 0 chr13 31808806 31808868 -87936030 - MIR SINE MIR -115 147 81 206 106 43 21 chr13 31809953 31810000 -87934898 + (CGGG)n Simple_repeat Simple_repeat 2 49 0 358 319 129 74 chr13 31810020 31810778 -87934120 + L1M2 LINE L1 471 1270 -5579 225 0 0 0 chr13 31813315 31813340 -87931558 + (TG)n Simple_repeat Simple_repeat 1 25 0 362 119 48 0 chr13 31813340 31813424 -87931474 + GA-rich Low_complexity Low_complexity 2 89 0 1216 282 175 10 chr13 31813832 31814445 -87930453 + L2 LINE L2 1954 2667 -647 2227 99 0 7 chr13 31815217 31815509 -87929389 + AluSq SINE Alu 1 290 -23 211 267 13 67 chr13 31816220 31816295 -87928603 + L2 LINE L2 2957 3027 -245 196 368 35 11 chr13 31816333 31816420 -87928478 + L2 LINE L2 3149 3237 -35 301 265 147 1 chr13 31816632 31816758 -87928140 - MLT1J2 LTR MaLR -223 227 99 337 330 168 21 chr13 31817481 31817766 -87927132 - L3 LINE CR1 -11 1566 1240 187 152 0 0 chr13 31817868 31817901 -87926997 - MIR SINE MIR -10 252 220 905 202 43 58 chr13 31818875 31819083 -87925815 - MER58A DNA MER1_type 0 224 20 709 242 144 28 chr13 31819246 31819531 -87925367 - L3 LINE CR1 -464 1113 796 266 250 37 56 chr13 31819867 31819975 -87924923 + MLT1H LTR MaLR 440 545 -4 303 222 56 0 chr13 31819982 31820054 -87924844 + HAL1 LINE L1 1268 1343 -1164 512 244 9 0 chr13 31820080 31820195 -87924703 - HERV16 LTR ERVL -3169 1827 1712 1465 320 53 18 chr13 31820218 31820881 -87924017 - HERV16 LTR ERVL -3539 1457 772 251 241 69 0 chr13 31820941 31820999 -87923899 - HERV16 LTR ERVL -4320 676 615 303 323 55 18 chr13 31821264 31821428 -87923470 - HERV16 LTR ERVL -4766 230 61 1844 247 33 20 chr13 31821448 31821906 -87922992 - LTR16B LTR ERVL 0 464 1 1278 259 154 22 chr13 31821906 31822490 -87922408 + HAL1 LINE L1 1531 2191 -316 429 213 213 62 chr13 31822492 31822717 -87922181 + HAL1 LINE L1 2235 2493 -14 22 88 0 0 chr13 31822718 31822775 -87922123 + AT_rich Low_complexity Low_complexity 1 57 0 194 348 37 31 chr13 31822826 31822987 -87921911 - L3 LINE CR1 -861 716 555 1489 199 65 70 chr13 31823199 31823244 -87921654 - MSTD LTR MaLR 0 396 352 2397 63 0 0 chr13 31823244 31823554 -87921344 - AluY SINE Alu 0 310 1 1489 199 65 70 chr13 31823554 31823905 -87920993 - MSTD LTR MaLR -44 352 1 842 306 15 6 chr13 31824414 31824750 -87920148 + HAL1 LINE L1 1032 1370 -1137 779 269 200 37 chr13 31824753 31825488 -87919410 + HAL1 LINE L1 1642 2496 -11 268 294 94 0 chr13 31825577 31825662 -87919236 - MIR SINE MIR -86 122 30 603 264 194 65 chr13 31825873 31826400 -87918498 - MLT1G1 LTR MaLR 0 595 1 279 341 83 30 chr13 31826428 31826560 -87918338 + L2 LINE L2 2953 3091 -181 230 288 121 79 chr13 31827070 31827285 -87917613 + L2 LINE L2 2837 3060 -253 250 262 12 36 chr13 31827942 31828026 -87916872 + LTR37B LTR ERV1 117 198 -270 * 297 259 12 12 chr13 31828015 31828100 -87916798 + LTR37A LTR ERV1 111 195 -231 797 203 32 60 chr13 31828175 31828426 -87916472 + L2 LINE L2 3065 3308 -5 495 227 53 0 chr13 31828505 31828637 -87916261 + MER112 DNA MER1_type 77 215 -45 489 125 50 0 chr13 31829954 31830074 -87914824 + (CA)n Simple_repeat Simple_repeat 2 127 0 245 157 0 59 chr13 31830179 31830230 -87914668 - MLT1K LTR MaLR -317 271 224 318 192 41 0 chr13 31830399 31830472 -87914426 + L1MB2 LINE L1 6096 6171 0 282 282 64 0 chr13 31830816 31830894 -87914004 + L2 LINE L2 3229 3311 -2 645 222 100 123 chr13 31831108 31831459 -87913439 + MLT1H LTR MaLR 1 343 -206 408 263 62 96 chr13 31832537 31832956 -87911942 - L1ME4a LINE L1 -4 6117 5713 193 196 0 22 chr13 31832956 31833002 -87911896 + L2 LINE L2 3269 3313 0 765 257 82 31 chr13 31834483 31834740 -87910158 + L2 LINE L2 2451 2720 -594 327 209 132 54 chr13 31834743 31834872 -87910026 + L1ME2 LINE L1 5886 6024 -140 538 156 19 14 chr13 31834875 31834977 -87909921 - L1ME LINE L1 -357 5805 5705 648 49 0 24 chr13 31834977 31835059 -87909839 + MADE1 DNA Mariner 1 80 0 538 156 19 14 chr13 31835059 31835079 -87909819 - L1ME LINE L1 -457 5705 5687 815 165 129 31 chr13 31835133 31835327 -87909571 - MIR SINE MIR -42 220 8 234 180 369 9 chr13 31835546 31835657 -87909241 + L2 LINE L2 3159 3309 -4 21 0 0 0 chr13 31835678 31835699 -87909199 + AT_rich Low_complexity Low_complexity 1 21 0 3010 206 36 81 chr13 31835868 31836304 -87908594 - L1ME2 LINE L1 -36 6197 5743 2118 101 0 10 chr13 31836304 31836601 -87908297 - AluSq SINE Alu -19 294 1 3010 206 36 81 chr13 31836601 31836848 -87908050 - L1ME2 LINE L1 -490 5743 5565 2004 144 14 0 chr13 31836848 31837139 -87907759 - AluSx SINE Alu -17 295 1 3010 206 36 81 chr13 31837139 31837388 -87907510 - L1ME2 LINE L1 -668 5565 5306 358 228 89 0 chr13 31837394 31837495 -87907403 + L1M4 LINE L1 5120 5229 -917 2425 231 78 5 chr13 31837516 31838259 -87906639 - L1ME2 LINE L1 -1033 5182 4386 1107 141 0 50 chr13 31838261 31838460 -87906438 - AluJo SINE Alu 0 312 124 751 173 72 43 chr13 31838460 31838574 -87906324 - L1ME2 LINE L1 -1838 4377 4253 183 42 0 0 chr13 31838574 31838598 -87906300 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 751 173 72 43 chr13 31838598 31838691 -87906207 - L1ME2 LINE L1 -1962 4253 4164 5080 234 30 27 chr13 31838693 31839099 -87905799 - L1M4 LINE L1 -1717 4429 4026 2208 68 14 0 chr13 31839099 31839401 -87905497 - AluSp SINE Alu 0 306 1 5080 234 30 27 chr13 31839401 31840838 -87904060 - L1M4 LINE L1 -2120 4026 2588 674 257 78 47 chr13 31840819 31840976 -87903922 - L1ME2 LINE L1 -3930 2466 2315 * 2093 84 84 0 chr13 31840976 31841250 -87903648 - AluSg SINE Alu -13 297 1 674 257 78 47 chr13 31841250 31841516 -87903382 - L1ME2 LINE L1 -4081 2315 2030 601 304 94 38 chr13 31841532 31842391 -87902507 - L1ME2 LINE L1 -5152 1053 173 277 202 119 36 chr13 31843135 31843219 -87901679 - L2 LINE L2 -213 3059 2969 240 261 0 0 chr13 31843750 31843815 -87901083 - L1ME LINE L1 -367 5754 5690 230 281 45 11 chr13 31844457 31844546 -87900352 - MIR SINE MIR -57 205 114 341 258 22 0 chr13 31844725 31844814 -87900084 - MIR SINE MIR -12 250 160 1682 157 40 30 chr13 31844873 31845173 -87899725 + AluJo SINE Alu 1 303 -9 1517 178 6 38 chr13 31845569 31845889 -87899009 - AluJo SINE Alu -2 310 1 2297 52 0 35 chr13 31850147 31850437 -87894461 + AluY SINE Alu 13 292 -19 2483 72 7 0 chr13 31851946 31852253 -87892645 - AluY SINE Alu -2 309 1 2305 117 0 0 chr13 31853075 31853384 -87891514 - AluSg SINE Alu -1 309 1 1635 163 67 11 chr13 31853575 31853858 -87891040 - AluJb SINE Alu -13 299 1 1767 171 7 10 chr13 31855711 31856004 -87888894 + AluJb SINE Alu 2 293 -19 2303 125 0 0 chr13 31856004 31856309 -87888589 + AluSx SINE Alu 1 305 -7 2054 141 42 12 chr13 31856366 31856919 -87887979 - LTR31 LTR ERV1 -9 610 1 2265 90 0 23 chr13 31857105 31857406 -87887492 + AluSc SINE Alu 1 294 -15 630 160 16 0 chr13 31859304 31859429 -87885469 - L1ME4a LINE L1 -3 6118 5992 398 245 133 0 chr13 31859450 31859601 -87885297 - L1ME4a LINE L1 -204 5917 5747 1800 141 7 4 chr13 31860565 31860834 -87884064 + AluJo SINE Alu 13 282 -30 931 160 50 0 chr13 31860896 31861096 -87883802 - Charlie5 DNA MER1_type 0 2623 2414 230 350 60 10 chr13 31861247 31861347 -87883551 + L2 LINE L2 3168 3272 0 333 0 0 0 chr13 31862023 31862060 -87882838 + (T)n Simple_repeat Simple_repeat 1 37 0 231 206 88 29 chr13 31862152 31862220 -87882678 + MIR SINE MIR 73 144 -118 334 295 0 32 chr13 31864242 31864337 -87880561 + MIR SINE MIR 60 151 -57 445 220 262 0 chr13 31864346 31864487 -87880411 + MER5B DNA MER1_type 1 178 0 453 233 164 25 chr13 31864494 31864653 -87880245 - MER5A DNA MER1_type 0 189 9 1889 112 26 0 chr13 31864909 31865178 -87879720 - L1PA11 LINE L1 -7 6167 5892 27 29 0 0 chr13 31865539 31865573 -87879325 + AT_rich Low_complexity Low_complexity 1 34 0 278 223 284 20 chr13 31866901 31867049 -87877849 + L2 LINE L2 3127 3313 0 511 174 143 0 chr13 31867852 31867950 -87876948 - MER5B DNA MER1_type 0 178 67 763 204 49 35 chr13 31867991 31868217 -87876681 + LTR33A LTR ERVL 274 502 -21 468 0 0 0 chr13 31869031 31869083 -87875815 + (CA)n Simple_repeat Simple_repeat 2 53 0 311 287 47 67 chr13 31869341 31869403 -87875495 - MIR SINE MIR -102 160 98 1218 152 221 70 chr13 31869403 31869719 -87875179 - MLT1A1 LTR MaLR 0 365 2 311 287 47 67 chr13 31869719 31869806 -87875092 - MIR SINE MIR -164 98 14 877 216 161 63 chr13 31870199 31870546 -87874352 + MER45R DNA AcHobo 1 381 -1200 245 152 0 0 chr13 31870562 31870608 -87874290 + MER45R DNA AcHobo 890 935 -646 1964 154 3 0 chr13 31870617 31870910 -87873988 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr13 31870915 31870935 -87873963 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2782 153 40 80 chr13 31870954 31871508 -87873390 + MER45R DNA AcHobo 930 1454 -127 2319 113 0 0 chr13 31871508 31871810 -87873088 - AluSx SINE Alu -10 302 1 2782 153 40 80 chr13 31871810 31871934 -87872964 + MER45R DNA AcHobo 1454 1581 0 1293 214 4 0 chr13 31872443 31872677 -87872221 - Charlie1a DNA MER1_type -1218 237 3 2218 109 0 19 chr13 31872954 31873267 -87871631 + AluSc SINE Alu 1 307 -2 425 319 57 69 chr13 31873342 31873731 -87871167 + HAL1 LINE L1 1218 1601 -906 1049 126 222 104 chr13 31874037 31874307 -87870591 - AluJo SINE Alu 0 302 1 238 226 0 48 chr13 31874670 31874754 -87870144 + A-rich Low_complexity Low_complexity 4 83 0 748 186 7 0 chr13 31874768 31874908 -87869990 + L1MC3 LINE L1 7451 7591 -194 204 97 0 0 chr13 31875176 31875207 -87869691 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 387 301 65 115 chr13 31875209 31875548 -87869350 - L2 LINE L2 -12 3260 2939 607 295 85 66 chr13 31875770 31876380 -87868518 + L1MD1 LINE L1 3356 3953 -2193 1836 135 62 0 chr13 31876380 31876669 -87868229 + AluSx SINE Alu 1 307 -5 607 295 85 66 chr13 31876669 31876837 -87868061 + L1MD1 LINE L1 3953 4116 -2030 743 178 0 31 chr13 31876837 31876966 -87867932 + FLAM_A SINE Alu 1 125 -8 607 295 85 66 chr13 31876966 31877106 -87867792 + L1MD1 LINE L1 4116 4292 -1854 225 154 0 0 chr13 31877781 31877820 -87867078 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 375 284 111 65 chr13 31878031 31878581 -87866317 + L1MD1 LINE L1 5330 5829 -413 189 121 0 0 chr13 31878624 31878657 -87866241 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 250 240 0 0 chr13 31878718 31878768 -87866130 + GA-rich Low_complexity Low_complexity 1 50 0 452 169 17 17 chr13 31878792 31878910 -87865988 + GA-rich Low_complexity Low_complexity 3 120 0 2107 229 44 50 chr13 31881505 31882122 -87862776 + MER97c DNA MER1_type? 4 616 -474 1206 186 5 0 chr13 31882128 31882348 -87862550 + L1M4 LINE L1 5438 5658 -526 739 203 32 0 chr13 31882349 31882507 -87862391 - MLT1F1 LTR MaLR -403 164 2 21 0 0 0 chr13 31882698 31882719 -87862179 + AT_rich Low_complexity Low_complexity 1 21 0 254 270 140 10 chr13 31883541 31883641 -87861257 + MIR SINE MIR 39 151 -111 227 231 0 0 chr13 31883686 31883738 -87861160 + L1MC4 LINE L1 6652 6703 -1339 2144 94 75 70 chr13 31883767 31884139 -87860759 - THE1C LTR MaLR -1 374 1 611 278 81 63 chr13 31887470 31887754 -87857144 + L2 LINE L2 3024 3312 -1 2237 161 75 50 chr13 31887844 31888260 -87856638 - MSTB LTR MaLR 0 426 1 2693 97 17 36 chr13 31888404 31888454 -87856444 - L1MA4 LINE L1 -4 6296 6247 216 0 0 0 chr13 31888454 31888478 -87856420 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2289 88 0 0 chr13 31888478 31888761 -87856137 - AluSx SINE Alu -29 283 1 2693 97 17 36 chr13 31888761 31889122 -87855776 - L1MA4 LINE L1 -51 6249 5892 2640 133 31 0 chr13 31889122 31889544 -87855354 + L1MA4 LINE L1 5409 5843 -457 1240 214 147 38 chr13 31889875 31890221 -87854677 - MLT2B1 LTR ERVL 0 520 137 14706 128 29 13 chr13 31890222 31892887 -87852011 - Tigger2 DNA MER2_type 0 2718 2 608 167 71 0 chr13 31892890 31893016 -87851882 - MLT2B1 LTR ERVL -385 135 1 213 363 113 43 chr13 31893143 31893443 -87851455 + L2 LINE L2 2369 2689 -625 1996 221 22 14 chr13 31894383 31894827 -87850071 - MER82 DNA MER2_type -7 646 199 1152 190 10 0 chr13 31895116 31895316 -87849582 - MER82 DNA MER2_type -451 202 1 512 92 51 51 chr13 31895911 31896009 -87848889 - L1MA5A LINE L1 -3 6294 6197 27 0 0 0 chr13 31896779 31896806 -87848092 + AT_rich Low_complexity Low_complexity 1 27 0 362 236 194 0 chr13 31897152 31897296 -87847602 + MER5A DNA MER1_type 8 179 -10 209 238 16 16 chr13 31898832 31898895 -87846003 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 21 82 0 0 chr13 31898963 31899012 -87845886 + AT_rich Low_complexity Low_complexity 1 49 0 1904 147 0 3 chr13 31899764 31900056 -87844842 + AluJb SINE Alu 1 291 -21 216 147 0 0 chr13 31900076 31900110 -87844788 - L2 LINE L2 -19 3253 3220 756 304 91 6 chr13 31901130 31901482 -87843416 + L3 LINE CR1 1190 1571 -6 277 331 171 7 chr13 31901999 31902268 -87842630 + L2 LINE L2 2967 3279 -34 636 246 104 5 chr13 31903920 31904140 -87840758 - MIR SINE MIR 0 262 21 507 133 61 8 chr13 31906045 31906282 -87838616 + (TCTA)n Simple_repeat Simple_repeat 1 249 0 237 323 42 0 chr13 31906698 31906794 -87838104 - MIR SINE MIR -142 120 21 276 196 54 115 chr13 31907698 31907846 -87837052 + Charlie7 DNA MER1_type 2427 2565 -47 742 267 63 55 chr13 31909113 31909510 -87835388 + MLT1L LTR MaLR 1 400 -215 225 196 107 0 chr13 31909554 31909610 -87835288 + MLT1L LTR MaLR 507 568 -47 241 340 59 55 chr13 31909889 31910145 -87834753 + L2 LINE L2 3004 3260 -12 2230 104 0 7 chr13 31910741 31911038 -87833860 - AluSx SINE Alu -17 295 1 296 267 0 22 chr13 31912048 31912138 -87832760 + MIR SINE MIR 125 212 -50 391 288 17 8 chr13 31912184 31912302 -87832596 - L2 LINE L2 0 3313 3195 522 236 20 92 chr13 31914306 31914404 -87830494 + MLT1L LTR MaLR 420 499 -116 1694 121 121 11 chr13 31914404 31914669 -87830229 - AluSg SINE Alu -16 294 1 522 236 20 92 chr13 31914669 31914765 -87830133 + MLT1L LTR MaLR 499 600 -15 2216 123 0 3 chr13 31914913 31915214 -87829684 + AluSx SINE Alu 1 300 -12 2066 129 0 44 chr13 31915299 31915480 -87829418 - AluSx SINE Alu -8 304 141 2267 118 0 0 chr13 31915480 31915776 -87829122 - AluSq SINE Alu -17 296 1 2066 129 0 44 chr13 31915776 31915912 -87828986 - AluSx SINE Alu -171 141 1 576 205 103 7 chr13 31916032 31916182 -87828716 + MER45A DNA AcHobo 13 178 0 2587 77 0 3 chr13 31916403 31916716 -87828182 + AluSx SINE Alu 1 312 0 213 65 0 0 chr13 31921502 31921533 -87823365 + (TG)n Simple_repeat Simple_repeat 1 31 0 408 172 16 8 chr13 31921533 31921655 -87823243 + GA-rich Low_complexity Low_complexity 2 124 0 433 208 12 0 chr13 31921701 31921874 -87823024 + GA-rich Low_complexity Low_complexity 1 175 0 204 318 0 0 chr13 31922451 31922514 -87822384 + L2 LINE L2 3209 3271 -1 441 175 0 0 chr13 31925161 31925241 -87819657 + AluJ/FRAM SINE Alu 219 298 -14 213 383 47 7 chr13 31925389 31925538 -87819360 + MIR SINE MIR 47 201 -61 1970 133 43 54 chr13 31925854 31926222 -87818676 + THE1B LTR MaLR 1 364 0 793 182 0 0 chr13 31926222 31926354 -87818544 + FLAM_A SINE Alu 11 142 0 600 290 29 29 chr13 31927213 31927458 -87817440 + MER112 DNA MER1_type 8 252 -8 308 310 125 47 chr13 31927615 31927824 -87817074 + L3 LINE CR1 280 520 -1057 1499 112 51 0 chr13 31927824 31928039 -87816859 + MER30 DNA MER1_type 5 230 0 308 310 125 47 chr13 31928039 31928126 -87816772 + L3 LINE CR1 520 599 -978 744 333 80 27 chr13 31928388 31928838 -87816060 + L3 LINE CR1 759 1232 -345 367 219 123 0 chr13 31928838 31928952 -87815946 + MER5C DNA MER1_type 1 128 -196 2093 133 7 0 chr13 31929480 31929774 -87815124 + AluSx SINE Alu 1 296 -16 2385 187 64 27 chr13 31929988 31930576 -87814322 + LTR27 LTR ERV1 3 680 -141 580 192 79 11 chr13 31930717 31930894 -87814004 + MER5C DNA MER1_type 132 320 -4 314 135 0 19 chr13 31931013 31931065 -87813833 - MER58A DNA MER1_type -11 96 46 375 300 74 58 chr13 31931104 31931414 -87813484 + L3 LINE CR1 1261 1575 -2 306 279 135 0 chr13 31932902 31933006 -87811892 + MIR SINE MIR 32 149 -113 2311 95 16 0 chr13 31934394 31934698 -87810200 - AluSx SINE Alu -3 309 1 326 348 118 9 chr13 31934856 31935077 -87809821 + MIR SINE MIR 4 248 -14 189 326 45 30 chr13 31935114 31935246 -87809652 - L2 LINE L2 -350 2963 2830 1280 164 9 35 chr13 31935672 31935903 -87808995 - AluJo SINE Alu -17 295 71 1308 208 58 61 chr13 31936476 31936837 -87808061 + MLT1A2 LTR MaLR 1 360 -14 255 143 0 0 chr13 31936910 31936945 -87807953 - Alu SINE Alu -267 35 1 892 204 78 13 chr13 31936950 31937180 -87807718 - L1ME3 LINE L1 -189 5973 5729 2277 98 3 7 chr13 31937182 31937489 -87807409 - AluSc SINE Alu -3 306 1 203 379 116 12 chr13 31937845 31938096 -87806802 + L2 LINE L2 2368 2644 -670 3035 201 106 61 chr13 31938738 31939539 -87805359 + L1ME1 LINE L1 5213 6220 -114 1842 146 0 33 chr13 31939539 31939679 -87805219 + AluJb SINE Alu 1 144 -168 2283 106 3 0 chr13 31939679 31939971 -87804927 + AluSx SINE Alu 1 293 -19 1842 146 0 33 chr13 31939971 31940132 -87804766 + AluJb SINE Alu 144 292 -20 3035 201 106 61 chr13 31940132 31940252 -87804646 + L1ME1 LINE L1 6220 6333 -1 4431 225 35 27 chr13 31940264 31941308 -87803590 + L1MC1 LINE L1 2 1054 -5488 213 65 0 0 chr13 31941308 31941339 -87803559 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6002 195 26 11 chr13 31941342 31943030 -87801868 + L1MC1 LINE L1 5119 6831 0 189 328 0 31 chr13 31943926 31943990 -87800908 + L2 LINE L2 3201 3262 -10 226 361 67 25 chr13 31944004 31944123 -87800775 - MIR3 SINE MIR -27 181 58 389 300 269 8 chr13 31944524 31944784 -87800114 - L2 LINE L2 0 3272 2945 2422 186 29 10 chr13 31944833 31945248 -87799650 - MSTB LTR MaLR -1 425 3 245 311 194 34 chr13 31945318 31945700 -87799198 - L2 LINE L2 -546 2768 2326 2701 169 53 25 chr13 31945989 31946520 -87798378 + LTR35 LTR ERV1 73 618 0 340 287 37 19 chr13 31948945 31949053 -87795845 + MIR SINE MIR 151 260 -2 31 44 0 0 chr13 31949276 31949321 -87795577 + AT_rich Low_complexity Low_complexity 1 45 0 490 298 42 64 chr13 31949747 31950059 -87794839 + MER41E LTR ERV1 148 452 -60 465 206 36 198 chr13 31950202 31950450 -87794448 + MIR SINE MIR 45 252 -10 28 71 0 0 chr13 31950664 31950720 -87794178 + AT_rich Low_complexity Low_complexity 1 56 0 1980 153 0 7 chr13 31951022 31951330 -87793568 + AluSx SINE Alu 1 306 -6 246 105 0 0 chr13 31951820 31951858 -87793040 + (GA)n Simple_repeat Simple_repeat 2 39 0 3597 235 65 10 chr13 31953243 31954947 -87789951 + L1ME1 LINE L1 4235 6051 -115 1930 174 0 0 chr13 31954947 31955251 -87789647 - AluJo SINE Alu -8 304 1 3597 235 65 10 chr13 31955251 31955354 -87789544 + L1ME1 LINE L1 6051 6147 -19 2581 106 6 11 chr13 31955355 31955712 -87789186 - THE1A LTR MaLR 0 355 1 1199 64 6 0 chr13 31955712 31955869 -87789029 - THE1A-int LTR MaLR 0 1580 1423 * 4989 96 38 10 chr13 31955863 31956569 -87788329 - THE1A-int LTR MaLR -853 727 2 2684 93 8 8 chr13 31956570 31956925 -87787973 - THE1A LTR MaLR 0 355 1 2144 130 0 10 chr13 31956940 31957241 -87787657 + AluSx SINE Alu 1 298 -14 636 100 33 33 chr13 31957241 31957421 -87787477 + (TA)n Simple_repeat Simple_repeat 1 180 0 29 28 0 0 chr13 31957476 31957512 -87787386 + AT_rich Low_complexity Low_complexity 1 36 0 280 344 10 10 chr13 31958086 31958182 -87786716 + MIR SINE MIR 19 114 -94 200 200 18 0 chr13 31958715 31958770 -87786128 + CT-rich Low_complexity Low_complexity 2 57 0 315 357 16 8 chr13 31958798 31958924 -87785974 + L2 LINE L2 3185 3311 -2 2206 120 10 0 chr13 31960377 31960686 -87784212 + AluSx SINE Alu 1 312 0 2999 92 2 10 chr13 31963570 31963973 -87780925 + L1MA1 LINE L1 5903 6302 0 21 36 0 0 chr13 31967919 31967947 -87776951 + AT_rich Low_complexity Low_complexity 1 28 0 738 275 67 37 chr13 31968002 31968364 -87776534 + MLT1I LTR MaLR 52 395 -14 684 48 10 19 chr13 31971367 31971470 -87773428 + (GGAA)n Simple_repeat Simple_repeat 4 105 0 658 262 24 12 chr13 31972676 31972844 -87772054 + MIR SINE MIR 49 218 -44 194 329 106 63 chr13 31972985 31973222 -87771676 - L2 LINE L2 0 3272 3026 201 39 0 0 chr13 31974672 31974698 -87770200 + (CA)n Simple_repeat Simple_repeat 1 26 0 374 236 68 96 chr13 31975432 31975652 -87769246 + MER112 DNA MER1_type 5 218 -42 217 273 48 100 chr13 31975747 31975890 -87769008 + L2 LINE L2 2451 2579 -735 1712 94 31 5 chr13 31975890 31976114 -87768784 + MER30 DNA MER1_type 1 230 0 217 273 48 100 chr13 31976114 31976201 -87768697 + L2 LINE L2 2579 2669 -645 389 335 109 40 chr13 31976393 31976697 -87768201 + L2 LINE L2 2932 3256 -16 190 279 110 118 chr13 31977460 31977697 -87767201 + L2 LINE L2 2954 3188 -84 297 255 57 9 chr13 31977954 31978060 -87766838 + MIR SINE MIR 74 184 -78 227 295 54 60 chr13 31978829 31978978 -87765920 + L2 LINE L2 2702 2849 -465 2083 132 7 7 chr13 31981083 31981387 -87763511 - AluSx SINE Alu -8 304 1 207 179 0 0 chr13 31981880 31981919 -87762979 + (CA)n Simple_repeat Simple_repeat 2 40 0 288 274 0 0 chr13 31982708 31982781 -87762117 + GA-rich Low_complexity Low_complexity 4 76 0 1353 174 101 22 chr13 31983471 31983747 -87761151 + AluJb SINE Alu 1 298 -14 2342 110 3 0 chr13 31983885 31984194 -87760704 - AluSg SINE Alu 0 310 1 22 0 0 0 chr13 31984538 31984560 -87760338 + AT_rich Low_complexity Low_complexity 1 22 0 290 270 14 14 chr13 31984628 31984702 -87760196 + MIR SINE MIR 74 147 -61 442 268 12 95 chr13 31985838 31985931 -87758967 - MIR SINE MIR -27 235 161 2203 104 3 0 chr13 31985931 31986219 -87758679 + AluSp SINE Alu 5 293 -20 442 268 12 95 chr13 31986219 31986293 -87758605 - MIR SINE MIR -101 161 82 277 271 106 65 chr13 31986777 31986947 -87757951 - MIR SINE MIR -41 221 45 579 215 44 0 chr13 31989080 31989215 -87755683 + MIR SINE MIR 53 193 -69 38 40 0 27 chr13 31989378 31989412 -87755486 + AT_rich Low_complexity Low_complexity 1 34 -38 1903 124 35 18 chr13 31989412 31989695 -87755203 + AluSx SINE Alu 1 288 -24 38 40 0 27 chr13 31989695 31989734 -87755164 + AT_rich Low_complexity Low_complexity 34 72 0 995 306 98 30 chr13 31989734 31990274 -87754624 + Charlie7 DNA MER1_type 113 689 -1923 388 182 25 66 chr13 31990259 31990380 -87754518 + Charlie7 DNA MER1_type 2497 2612 0 * 333 0 0 0 chr13 31990726 31990763 -87754135 + (TG)n Simple_repeat Simple_repeat 2 38 0 2305 96 0 0 chr13 31991204 31991507 -87753391 + AluY SINE Alu 1 303 -8 822 290 38 76 chr13 31991618 31992094 -87752804 + L2 LINE L2 2851 3308 -5 240 209 0 0 chr13 31992648 31992691 -87752207 + L2 LINE L2 3219 3261 -11 2451 73 3 19 chr13 31994057 31994373 -87750525 + AluY SINE Alu 1 311 0 213 22 0 89 chr13 31994378 31994423 -87750475 + (TAAAAA)n Simple_repeat Simple_repeat 4 44 0 584 218 123 41 chr13 31995263 31995433 -87749465 - L1ME LINE L1 -382 5739 5556 236 317 122 80 chr13 31995762 31996163 -87748735 - L2 LINE L2 -2 3270 2853 204 326 11 65 chr13 31997313 31997405 -87747493 - MIR SINE MIR -95 113 27 189 0 0 0 chr13 31998832 31998853 -87746045 + (GGAA)n Simple_repeat Simple_repeat 2 22 0 270 0 0 0 chr13 31999684 31999714 -87745184 + (CA)n Simple_repeat Simple_repeat 2 31 0 207 361 78 44 chr13 32001650 32002063 -87742835 - L2 LINE L2 -337 2977 2551 463 257 77 22 chr13 32002112 32002295 -87742603 + L1MC/D LINE L1 5625 5817 -1991 248 197 0 118 chr13 32002484 32002560 -87742338 - MER91A DNA MER1_type -129 67 1 1599 175 11 7 chr13 32003019 32003288 -87741610 + AluJb SINE Alu 12 281 -31 192 40 0 0 chr13 32003292 32003317 -87741581 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 581 259 138 0 chr13 32003703 32003892 -87741006 + MIR SINE MIR 38 252 -10 76 51 0 0 chr13 32004475 32004593 -87740305 + AT_rich Low_complexity Low_complexity 1 118 0 259 221 52 39 chr13 32004699 32004776 -87740122 - L1ME4a LINE L1 -108 6013 5936 1795 149 41 16 chr13 32004807 32005122 -87739776 + MER2 DNA MER2_type 22 344 -1 372 43 0 0 chr13 32005123 32005169 -87739729 + (TG)n Simple_repeat Simple_repeat 1 46 0 251 239 14 14 chr13 32005169 32005240 -87739658 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 573 94 0 0 chr13 32007973 32008058 -87736840 + (CA)n Simple_repeat Simple_repeat 2 86 0 6851 86 3 5 chr13 32009100 32010042 -87734856 + L1PB1 LINE L1 5210 6150 -1 2560 167 57 5 chr13 32010070 32010512 -87734386 + LTR32 LTR ERVL 7 471 0 225 108 0 0 chr13 32011301 32011338 -87733560 + (CA)n Simple_repeat Simple_repeat 2 38 0 2328 157 68 30 chr13 32011428 32011868 -87733030 + LTR32 LTR ERVL 15 471 0 306 139 0 0 chr13 32012695 32012738 -87732160 - MER45A DNA AcHobo 0 178 136 848 67 0 0 chr13 32012761 32012866 -87732032 + AluY SINE Alu 206 310 -1 1704 149 103 0 chr13 32012868 32013149 -87731749 + AluJo SINE Alu 1 310 -2 447 251 56 39 chr13 32013291 32013470 -87731428 + L2 LINE L2 3108 3289 -24 2368 101 0 3 chr13 32013729 32014037 -87730861 + AluSg SINE Alu 1 307 -3 1960 140 70 3 chr13 32014406 32014749 -87730149 - L1MB2 LINE L1 -7 6164 5799 620 182 6 136 chr13 32014950 32015030 -87729868 - MER45A DNA AcHobo -1403 178 132 2648 150 56 23 chr13 32015030 32015187 -87729711 + L1MB2 LINE L1 5670 5820 -351 2261 107 0 0 chr13 32015187 32015476 -87729422 + AluSc SINE Alu 1 289 -20 2648 150 56 23 chr13 32015476 32015797 -87729101 + L1MB2 LINE L1 5820 6164 -7 620 182 6 136 chr13 32015797 32015892 -87729006 - MER45A DNA AcHobo -1449 132 26 2290 91 0 0 chr13 32016695 32016980 -87727918 + AluSq SINE Alu 1 285 -28 1019 240 32 16 chr13 32017003 32017253 -87727645 + MIR SINE MIR 9 262 0 1434 233 78 18 chr13 32017664 32018050 -87726848 - MLT1I LTR MaLR 0 409 1 265 214 270 0 chr13 32018521 32018610 -87726288 - L2 LINE L2 0 3272 3160 1928 170 41 27 chr13 32019187 32019552 -87725346 + MLT1A2 LTR MaLR 1 370 -4 2130 136 3 0 chr13 32019751 32020053 -87724845 - AluSx SINE Alu -9 303 1 264 327 26 96 chr13 32021137 32021522 -87723376 - L2 LINE L2 -33 3239 2882 230 255 0 0 chr13 32024382 32024429 -87720469 - MER81 DNA DNA -36 78 32 1138 155 11 5 chr13 32025162 32025349 -87719549 + MER2 DNA MER2_type 3 190 -155 2234 109 0 10 chr13 32025349 32025653 -87719245 + AluSx SINE Alu 1 301 -11 232 211 56 42 chr13 32025722 32025793 -87719105 + MER2 DNA MER2_type 267 338 -7 2418 136 115 14 chr13 32025955 32026374 -87718524 + LOR1b LTR ERV1 1 461 0 5913 135 96 1 chr13 32026393 32027325 -87717573 + LTR28 LTR ERV1 1 1020 0 290 260 67 10 chr13 32027998 32028102 -87716796 + MIR SINE MIR 86 195 -67 837 253 5 31 chr13 32028366 32028416 -87716482 + MER5A DNA MER1_type 1 51 -138 2862 185 18 73 chr13 32028416 32029033 -87715865 + MER119 DNA MER1_type 1 583 0 837 253 5 31 chr13 32029033 32029176 -87715722 + MER5A DNA MER1_type 51 189 0 211 326 52 42 chr13 32030796 32030989 -87713909 + L2 LINE L2 2569 2763 -551 191 302 0 0 chr13 32031492 32031545 -87713353 - L2 LINE L2 -56 3257 3205 334 331 48 0 chr13 32031945 32032069 -87712829 + MIR SINE MIR 26 155 -107 225 211 39 0 chr13 32032096 32032148 -87712750 - MIR SINE MIR -50 212 159 4882 160 14 104 chr13 32032152 32034372 -87710526 - L1MB2 LINE L1 -1 6170 4166 21 0 0 0 chr13 32034829 32034850 -87710048 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr13 32034855 32034883 -87710015 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 5642 93 18 8 chr13 32034883 32036090 -87708808 + SVA Other Other 52 1386 0 248 350 166 14 chr13 32036786 32037003 -87707895 - L2 LINE L2 -505 2809 2560 658 192 212 25 chr13 32037277 32037475 -87707423 - MER46A DNA MER2_type -1 235 1 * 775 149 0 0 chr13 32037363 32037477 -87707421 + MER46A DNA MER2_type 33 146 -90 343 273 36 72 chr13 32037580 32037719 -87707179 - MIR SINE MIR -73 135 2 1308 249 109 31 chr13 32037775 32038262 -87706636 + MLT1H LTR MaLR 25 549 0 258 190 35 17 chr13 32039871 32039929 -87704969 - L2 LINE L2 0 3313 3255 21 0 0 0 chr13 32039991 32040012 -87704886 + AT_rich Low_complexity Low_complexity 1 21 0 2247 96 0 0 chr13 32040234 32040564 -87704334 + AluSx SINE Alu 1 330 0 354 296 94 13 chr13 32041093 32041252 -87703646 + MER5B DNA MER1_type 7 178 0 539 134 4 15 chr13 32041437 32041689 -87703209 + AluJo SINE Alu 1 312 0 225 298 16 24 chr13 32041925 32042049 -87702849 + CT-rich Low_complexity Low_complexity 1 123 0 428 310 89 24 chr13 32042828 32043041 -87701857 - MIR SINE MIR -23 239 13 198 0 0 0 chr13 32043100 32043122 -87701776 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1704 174 3 3 chr13 32043127 32043409 -87701489 - AluJb SINE Alu -30 282 1 298 306 200 30 chr13 32043823 32044088 -87700810 - L3 LINE CR1 -555 1022 713 373 362 27 43 chr13 32044098 32044286 -87700612 + L2 LINE L2 3087 3271 -1 258 210 123 12 chr13 32044425 32044506 -87700392 + MIR SINE MIR 95 184 -78 395 321 9 0 chr13 32047355 32047464 -87697434 - MER81 DNA DNA -1 113 4 3489 174 73 24 chr13 32047787 32048519 -87696379 + LTR1B LTR ERV1 1 785 0 23 33 0 0 chr13 32050137 32050167 -87694731 + AT_rich Low_complexity Low_complexity 1 30 0 277 335 31 37 chr13 32050360 32050551 -87694347 - L2 LINE L2 -927 2387 2198 281 306 151 83 chr13 32052288 32052540 -87692358 + L2 LINE L2 3004 3272 0 645 89 0 0 chr13 32053120 32053199 -87691699 + THE1B LTR MaLR 1 79 -285 935 136 7 0 chr13 32053199 32053339 -87691559 + AluSg/x SINE Alu 164 304 -6 449 289 44 22 chr13 32053353 32053533 -87691365 - MIR SINE MIR -67 195 12 181 428 86 0 chr13 32054265 32054417 -87690481 + L2 LINE L2 3107 3271 -1 965 241 9 5 chr13 32054470 32054686 -87690212 + MER20 DNA MER1_type 1 217 -2 338 0 24 0 chr13 32055968 32056010 -87688888 + (CA)n Simple_repeat Simple_repeat 1 43 0 384 307 20 0 chr13 32056329 32056430 -87688468 + MIR SINE MIR 50 152 -110 1195 191 38 0 chr13 32056445 32056655 -87688243 - MER20 DNA MER1_type -1 218 1 192 261 29 43 chr13 32056882 32056951 -87687947 + MIR SINE MIR 158 225 -37 1454 231 139 25 chr13 32057182 32057658 -87687240 + MLT1G3 LTR MaLR 1 530 0 548 260 96 19 chr13 32059442 32059650 -87685248 + MIR SINE MIR 21 244 -18 263 254 54 54 chr13 32060108 32060238 -87684660 + L2 LINE L2 3174 3303 -10 24 93 0 0 chr13 32060505 32060559 -87684339 + AT_rich Low_complexity Low_complexity 1 54 0 198 291 25 25 chr13 32061360 32061439 -87683459 - MIR SINE MIR 0 262 184 904 216 81 16 chr13 32061491 32061523 -87683375 + L1ME3 LINE L1 5695 5723 -439 2175 108 7 3 chr13 32061523 32061829 -87683069 + AluSg SINE Alu 1 307 -3 904 216 81 16 chr13 32061829 32062061 -87682837 + L1ME3 LINE L1 5723 5973 -189 250 143 0 0 chr13 32062066 32062101 -87682797 + Alu SINE Alu 1 35 -266 1310 205 58 61 chr13 32062174 32062535 -87682363 - MLT1A2 LTR MaLR -14 360 1 186 346 70 59 chr13 32062543 32062829 -87682069 - L2 LINE L2 -2110 1204 916 1303 157 9 26 chr13 32063108 32063337 -87681561 + AluJo SINE Alu 71 295 -17 230 326 45 30 chr13 32063764 32063896 -87681002 + L2 LINE L2 2831 2964 -350 294 325 102 41 chr13 32064175 32064470 -87680428 - L3 LINE CR1 -1072 505 193 219 308 99 0 chr13 32065351 32065442 -87679456 - L2 LINE L2 -5 3267 3168 1909 131 0 54 chr13 32065757 32066070 -87678828 + AluSx SINE Alu 1 296 -16 325 245 76 3 chr13 32066098 32066215 -87678683 + L1MA9 LINE L1 6167 6290 -4 1411 191 33 46 chr13 32066689 32066992 -87677906 - AluJo SINE Alu -13 299 1 203 42 0 0 chr13 32067777 32067801 -87677097 - L2 LINE L2 -23 3290 3267 185 362 0 0 chr13 32069479 32069548 -87675350 - L3 LINE CR1 -14 1563 1495 625 334 96 30 chr13 32069593 32069958 -87674940 - L3 LINE CR1 -209 1368 980 1572 146 47 36 chr13 32070895 32071170 -87673728 + AluJb SINE Alu 18 295 -17 413 313 87 56 chr13 32071364 32071900 -87672998 + L2 LINE L2 2691 3268 -4 3235 93 7 16 chr13 32072099 32072540 -87672358 + MLT2A1 LTR ERVL 1 437 -7 230 268 83 38 chr13 32072840 32072997 -87671901 + L1ME4a LINE L1 5873 6036 -85 2263 87 16 39 chr13 32073420 32073731 -87671167 - AluSx SINE Alu -4 308 5 230 254 45 0 chr13 32073906 32073973 -87670925 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 2056 137 102 0 chr13 32074269 32074584 -87670314 + MER7A DNA MER2_type 1 345 -1 476 264 0 0 chr13 32075039 32075149 -87669749 - L2 LINE L2 -5 3308 3199 473 316 53 53 chr13 32075362 32075549 -87669349 + MIR SINE MIR 29 215 -47 471 305 63 85 chr13 32076108 32076518 -87668380 + L2 LINE L2 2867 3267 -5 2491 74 0 3 chr13 32076855 32077167 -87667731 - AluY SINE Alu 0 311 1 331 213 50 12 chr13 32077610 32077690 -87667208 - MIR SINE MIR 0 262 180 1597 167 56 24 chr13 32077719 32078006 -87666892 - AluJb SINE Alu -16 296 1 359 145 26 13 chr13 32078006 32078082 -87666816 - MIR SINE MIR -66 196 120 275 306 83 9 chr13 32078333 32078441 -87666457 + L2 LINE L2 2945 3060 -212 400 305 85 0 chr13 32078633 32078790 -87666108 + MIR3 SINE MIR 3 164 -64 465 170 32 0 chr13 32079208 32079302 -87665596 + MER5A DNA MER1_type 9 105 -84 29 84 0 0 chr13 32079540 32079611 -87665287 + AT_rich Low_complexity Low_complexity 1 71 0 5565 107 0 28 chr13 32080196 32080992 -87663906 + L1PA10 LINE L1 4536 5299 -869 2288 122 0 0 chr13 32080992 32081303 -87663595 + AluSx SINE Alu 1 311 -1 5565 107 0 28 chr13 32081303 32081768 -87663130 + L1PA10 LINE L1 5299 5776 -392 738 136 0 0 chr13 32081869 32082005 -87662893 + L1PA10 LINE L1 6045 6180 0 2233 131 0 0 chr13 32082618 32082984 -87661914 - AluSq SINE Alu 0 366 1 2108 127 13 98 chr13 32084554 32084831 -87660067 - MER7A DNA MER2_type -2693 345 109 1776 163 13 16 chr13 32084831 32085144 -87659754 + AluJb SINE Alu 1 312 0 2108 127 13 98 chr13 32085144 32085243 -87659655 - MER7A DNA MER2_type -2929 109 3 487 224 50 37 chr13 32085251 32085419 -87659479 + MIR SINE MIR 40 212 -50 249 325 42 42 chr13 32087467 32087587 -87657311 - MIR3 SINE MIR -52 156 37 198 238 0 0 chr13 32088391 32088433 -87656465 + L2 LINE L2 3271 3312 -1 190 141 35 224 chr13 32088441 32088526 -87656372 - MIR SINE MIR -70 192 124 675 277 25 34 chr13 32089493 32089731 -87655167 - MIR SINE MIR -6 256 21 22 0 0 0 chr13 32090922 32090944 -87653954 + AT_rich Low_complexity Low_complexity 1 22 0 2061 125 0 0 chr13 32091006 32091316 -87653582 + AluSx SINE Alu 1 310 0 275 207 17 0 chr13 32091579 32091637 -87653261 - MIR SINE MIR -100 162 104 438 275 22 89 chr13 32092943 32093212 -87651686 + MIR SINE MIR 1 251 -11 1477 168 17 0 chr13 32093217 32093449 -87651449 - MER46A DNA MER2_type 0 236 1 2131 166 30 0 chr13 32095204 32095577 -87649321 + MLT1B LTR MaLR 7 390 0 207 329 37 12 chr13 32095674 32095756 -87649142 - MIR3 SINE MIR -39 169 86 199 170 0 151 chr13 32096419 32096472 -87648426 - L2 LINE L2 -9 3263 3219 * 622 305 26 34 chr13 32096441 32096674 -87648224 - MIR SINE MIR -17 245 15 248 247 165 21 chr13 32099211 32099308 -87645590 + MER103 DNA DNA 22 132 -34 234 160 0 120 chr13 32099530 32099580 -87645318 - Alu SINE Alu -125 174 131 528 286 32 13 chr13 32101442 32101596 -87643302 - MIR3 SINE MIR -2 206 50 330 26 0 0 chr13 32102066 32102105 -87642793 + (TG)n Simple_repeat Simple_repeat 2 40 0 306 103 0 218 chr13 32102175 32102262 -87642636 + L1MB3 LINE L1 5423 5490 -681 2537 147 2 12 chr13 32102263 32102677 -87642221 + L1MB3 LINE L1 5774 6183 0 1962 153 0 10 chr13 32103408 32103709 -87641189 + AluJo SINE Alu 5 302 -10 457 215 146 15 chr13 32103965 32104095 -87640803 + MIR SINE MIR 6 152 -110 30 0 0 0 chr13 32104520 32104550 -87640348 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 32105380 32105401 -87639497 + AT_rich Low_complexity Low_complexity 1 21 0 204 237 0 0 chr13 32107504 32107542 -87637356 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 244 156 0 0 chr13 32107542 32107587 -87637311 - LTR66 LTR ERVL -172 438 394 440 248 22 72 chr13 32109350 32109525 -87635373 - MIR SINE MIR -63 145 18 1533 254 203 17 chr13 32109657 32110366 -87634532 + L2 LINE L2 1838 2678 -636 699 286 45 31 chr13 32110367 32110654 -87634244 + L2 LINE L2 2949 3239 -74 249 159 0 0 chr13 32110687 32110731 -87634167 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 373 273 57 11 chr13 32110799 32110887 -87634011 - MIR SINE MIR -157 105 14 4704 165 60 2 chr13 32111156 32112408 -87632490 + L1MB7 LINE L1 4865 6183 -1 275 296 74 30 chr13 32112485 32112620 -87632278 + MIR3 SINE MIR 37 177 -31 491 325 66 0 chr13 32112753 32112919 -87631979 + MIR SINE MIR 35 211 -51 656 227 0 8 chr13 32113538 32113670 -87631228 + FLAM_A SINE Alu 1 131 -2 2070 121 13 10 chr13 32114072 32114370 -87630528 + AluSx SINE Alu 1 299 -13 648 175 158 12 chr13 32114380 32114551 -87630347 - MIR SINE MIR 0 262 67 622 270 48 70 chr13 32116009 32116429 -87628469 + L2 LINE L2 2845 3249 -23 21 0 0 0 chr13 32117897 32117918 -87626980 + AT_rich Low_complexity Low_complexity 1 21 0 1803 135 0 18 chr13 32118090 32118364 -87626534 - AluSx SINE Alu -43 269 1 22 0 0 0 chr13 32118747 32118769 -87626129 + AT_rich Low_complexity Low_complexity 1 22 0 888 183 0 23 chr13 32118788 32118963 -87625935 - FRAM SINE Alu -2 174 4 541 290 152 99 chr13 32119181 32119562 -87625336 + L2 LINE L2 2122 2481 -833 1852 159 7 16 chr13 32119562 32119871 -87625027 + AluJb SINE Alu 1 306 -6 541 290 152 99 chr13 32119871 32120258 -87624640 + L2 LINE L2 2481 2931 -383 634 234 72 6 chr13 32120346 32120513 -87624385 + MER5B DNA MER1_type 1 178 0 1082 193 244 52 chr13 32122216 32122621 -87622277 + MLT1F1 LTR MaLR 1 507 -59 1976 120 3 31 chr13 32122875 32123208 -87621690 - AluSx SINE Alu 0 325 1 2087 139 16 68 chr13 32123410 32123507 -87621391 + MER7A DNA MER2_type 1 101 -2937 1999 142 0 35 chr13 32123507 32123817 -87621081 - AluSx SINE Alu -13 299 1 2087 139 16 68 chr13 32123817 32124086 -87620812 + MER7A DNA MER2_type 101 346 0 29 60 0 0 chr13 32126483 32126533 -87618365 + GC_rich Low_complexity Low_complexity 1 50 0 314 221 21 71 chr13 32126920 32127060 -87617838 + C-rich Low_complexity Low_complexity 2 134 0 244 325 202 29 chr13 32128973 32129770 -87615128 + L2 LINE L2 1141 2075 -1239 186 197 76 30 chr13 32129862 32129928 -87614970 + MIR SINE MIR 151 219 -43 610 280 142 19 chr13 32129974 32130242 -87614656 + L2 LINE L2 3013 3313 0 192 379 9 9 chr13 32130287 32130403 -87614495 + L2 LINE L2 2358 2473 -841 185 218 129 118 chr13 32130519 32130689 -87614209 + L2 LINE L2 2912 3083 -189 29 0 0 0 chr13 32131019 32131048 -87613850 + AT_rich Low_complexity Low_complexity 1 29 0 399 261 84 25 chr13 32131197 32131400 -87613498 - L1ME4a LINE L1 -217 5904 5690 855 305 12 4 chr13 32132727 32132986 -87611912 + MIR SINE MIR 2 262 0 196 350 33 42 chr13 32133651 32133771 -87611127 + MIR SINE MIR 25 143 -65 273 321 37 0 chr13 32134391 32134472 -87610426 - MIR SINE MIR -126 136 53 883 138 15 0 chr13 32134486 32134616 -87610282 + AluSq SINE Alu 23 154 -159 7666 130 82 101 chr13 32134616 32136334 -87608564 + pTR5 LTR ERV1 747 2432 -6 1163 145 0 0 chr13 32136334 32136493 -87608405 + AluSg/x SINE Alu 138 296 -16 2201 104 0 0 chr13 32137021 32137318 -87607580 - AluY SINE Alu -14 297 1 327 167 0 0 chr13 32137520 32137574 -87607324 + Tigger2 DNA MER2_type 3 56 -2662 2320 73 3 35 chr13 32137577 32137891 -87607007 - AluY SINE Alu -7 304 1 2072 132 120 57 chr13 32137893 32138305 -87606593 + Tigger2 DNA MER2_type 2267 2708 -10 2444 108 134 8 chr13 32138305 32138685 -87606213 - MSTA LTR MaLR 0 428 1 2072 132 120 57 chr13 32138685 32138697 -87606201 + Tigger2 DNA MER2_type 2708 2718 0 2627 136 75 5 chr13 32138842 32139240 -87605658 - MSTB LTR MaLR 0 426 1 205 242 45 15 chr13 32139346 32139412 -87605486 + L2 LINE L2 3225 3292 -21 523 316 174 4 chr13 32139461 32139708 -87605190 + L2 LINE L2 3006 3294 -19 232 314 107 14 chr13 32139811 32139951 -87604947 + L2 LINE L2 749 901 -2413 282 206 96 0 chr13 32140391 32140464 -87604434 + L2 LINE L2 2891 2970 -343 367 309 57 8 chr13 32140515 32140638 -87604260 + L2 LINE L2 3184 3312 -1 779 197 23 0 chr13 32140970 32141102 -87603796 + AluJo SINE Alu 1 135 -177 23 0 0 0 chr13 32141189 32141212 -87603686 + AT_rich Low_complexity Low_complexity 1 23 0 2553 49 0 0 chr13 32141394 32141699 -87603199 + AluY SINE Alu 1 305 -6 370 210 0 0 chr13 32145123 32145185 -87599713 - L2 LINE L2 0 3313 3252 207 0 0 0 chr13 32145314 32145337 -87599561 + (CAG)n Simple_repeat Simple_repeat 1 23 0 324 231 13 39 chr13 32145366 32145444 -87599454 - L2 LINE L2 -9 3263 3188 462 200 38 9 chr13 32145790 32145895 -87599003 + MER53 DNA DNA 1 108 -81 181 292 0 0 chr13 32146587 32146635 -87598263 + L2 LINE L2 3219 3266 -6 686 217 102 6 chr13 32146822 32146988 -87597910 + MIR SINE MIR 64 245 -17 2250 108 3 10 chr13 32147394 32147708 -87597190 - AluSx SINE Alu 0 312 1 327 365 40 14 chr13 32148404 32148552 -87596346 + MIR3 SINE MIR 48 199 -9 21 0 0 0 chr13 32150197 32150218 -87594680 + AT_rich Low_complexity Low_complexity 1 21 0 5185 150 43 9 chr13 32150281 32151252 -87593646 + L1MB3 LINE L1 5175 6181 -2 193 306 159 71 chr13 32151601 32151771 -87593127 - MER5A DNA MER1_type 0 189 5 374 181 0 96 chr13 32152188 32152231 -87592667 - MER94 DNA DNA -40 94 63 2651 85 13 75 chr13 32152231 32152629 -87592269 - THE1C LTR MaLR -2 373 1 374 181 0 96 chr13 32152629 32152679 -87592219 - MER94 DNA DNA -71 63 10 382 279 0 73 chr13 32153021 32153157 -87591741 - L2 LINE L2 0 3313 3188 812 157 54 7 chr13 32153275 32153422 -87591476 + FAM SINE Alu 18 171 -14 256 253 140 43 chr13 32153538 32153724 -87591174 - L2 LINE L2 -1177 2137 1934 239 312 65 0 chr13 32154443 32154536 -87590362 - L3b LINE CR1 -97 1486 1388 2479 77 0 3 chr13 32155297 32155608 -87589290 + AluSg SINE Alu 1 310 0 2002 156 0 0 chr13 32155616 32155917 -87588981 + AluJb SINE Alu 1 301 -11 694 229 45 22 chr13 32156436 32156615 -87588283 - MIR SINE MIR -74 188 6 303 302 58 0 chr13 32156667 32156753 -87588145 - L2 LINE L2 -19 3294 3204 2135 91 0 88 chr13 32156898 32157227 -87587671 + AluSx SINE Alu 1 300 -12 241 275 47 123 chr13 32157462 32157698 -87587200 - L2 LINE L2 -209 3063 2846 248 320 46 39 chr13 32157924 32158077 -87586821 - MER103 DNA DNA -12 154 1 2255 109 3 3 chr13 32158252 32158563 -87586335 + AluSx SINE Alu 1 311 -1 283 301 48 41 chr13 32159228 32159374 -87585524 + L2 LINE L2 3117 3263 -50 668 161 0 88 chr13 32160045 32160182 -87584716 + FLAM_C SINE Alu 1 125 -8 2116 124 6 43 chr13 32160256 32160578 -87584320 + AluSx SINE Alu 1 310 -2 180 0 0 0 chr13 32161922 32161942 -87582956 + (TA)n Simple_repeat Simple_repeat 2 21 0 330 26 0 0 chr13 32162014 32162053 -87582845 + (TA)n Simple_repeat Simple_repeat 1 39 0 225 0 0 0 chr13 32162259 32162284 -87582614 + (A)n Simple_repeat Simple_repeat 1 25 0 2346 87 30 0 chr13 32162370 32162670 -87582228 + AluSx SINE Alu 1 309 -3 30 0 0 0 chr13 32162670 32162700 -87582198 + AT_rich Low_complexity Low_complexity 1 30 0 1430 208 31 10 chr13 32163809 32164098 -87580800 - AluJo SINE Alu -17 295 1 262 236 85 66 chr13 32164186 32164292 -87580606 - L2 LINE L2 -15 3257 3150 2237 187 52 14 chr13 32164332 32164770 -87580128 - LTR32 LTR ERVL 0 471 17 2359 95 0 7 chr13 32165746 32166052 -87578846 - AluSq SINE Alu -9 304 1 2259 113 0 0 chr13 32169493 32169786 -87575112 - AluSx SINE Alu -19 293 1 215 294 76 0 chr13 32170546 32170638 -87574260 + MIR SINE MIR 94 192 -70 188 254 36 0 chr13 32170829 32170884 -87574014 - MIR SINE MIR -119 143 87 999 211 25 5 chr13 32171370 32171574 -87573324 - MER3 DNA MER1_type -1 208 1 26 30 0 0 chr13 32172479 32172512 -87572386 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr13 32173126 32173146 -87571752 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1532 160 7 44 chr13 32173149 32173442 -87571456 - AluJo SINE Alu -25 287 6 820 176 0 0 chr13 32173465 32173590 -87571308 - AluJb SINE Alu -187 125 1 793 287 61 32 chr13 32174050 32174426 -87570472 + L1MEc LINE L1 92 478 -5918 1987 215 64 16 chr13 32174447 32174885 -87570013 + LTR40b LTR ERVL 4 462 0 486 243 36 0 chr13 32174886 32174997 -87569901 + HERVL40 LTR ERVL 1 115 -5415 1422 215 120 3 chr13 32174999 32175324 -87569574 - MLT1A1 LTR MaLR 0 365 3 719 231 143 37 chr13 32175336 32175552 -87569346 + HERVL40 LTR ERVL 114 352 -5178 1629 240 120 10 chr13 32175559 32176374 -87568524 + L1ME1 LINE L1 4920 5830 -332 1587 142 21 31 chr13 32176379 32176667 -87568231 + L1MA9 LINE L1 5750 6034 -278 473 252 18 87 chr13 32176672 32176707 -87568191 + L1ME1 LINE L1 5832 5868 -298 2362 83 0 22 chr13 32176707 32177020 -87567878 + AluY SINE Alu 1 306 -5 473 252 18 87 chr13 32177020 32177202 -87567696 + L1ME1 LINE L1 5868 6034 -132 2379 151 17 18 chr13 32177228 32177754 -87567144 - L1MA9 LINE L1 -4 6296 5673 2264 88 3 10 chr13 32177760 32178057 -87566841 - AluY SINE Alu -16 295 1 398 214 106 4 chr13 32178065 32178187 -87566711 + L1ME1 LINE L1 6050 6334 0 437 195 48 22 chr13 32178199 32178357 -87566541 + L1MC4 LINE L1 6879 7039 -956 780 306 50 55 chr13 32178612 32179070 -87565828 + LTR16B LTR ERVL 9 464 0 515 321 19 19 chr13 32179127 32179342 -87565556 - L3 LINE CR1 -754 823 609 1769 126 6 94 chr13 32179743 32180085 -87564813 + LTR1B LTR ERV1 1 312 -514 2602 143 69 7 chr13 32180219 32180680 -87564218 + LTR1B LTR ERV1 337 826 0 4704 162 60 0 chr13 32180799 32181780 -87563118 + L1MB7 LINE L1 5149 6183 -1 275 296 74 30 chr13 32181857 32181992 -87562906 + MIR3 SINE MIR 37 177 -31 491 325 66 0 chr13 32182125 32182291 -87562607 + MIR SINE MIR 35 211 -51 656 227 0 8 chr13 32182910 32183042 -87561856 + FLAM_A SINE Alu 1 131 -2 2070 121 13 10 chr13 32183444 32183742 -87561156 + AluSx SINE Alu 1 299 -13 648 190 145 10 chr13 32183752 32183951 -87560947 - MIR SINE MIR 0 262 35 622 270 48 70 chr13 32185381 32185801 -87559097 + L2 LINE L2 2845 3249 -23 21 0 0 0 chr13 32187269 32187290 -87557608 + AT_rich Low_complexity Low_complexity 1 21 0 2506 37 31 0 chr13 32187934 32188228 -87556670 + AluY SINE Alu 1 303 -8 416 314 57 23 chr13 32188775 32188950 -87555948 + MER5A DNA MER1_type 6 186 -3 243 294 171 14 chr13 32189143 32189289 -87555609 + MIR SINE MIR 79 247 -15 1942 130 7 17 chr13 32189593 32189886 -87555012 - AluJo SINE Alu -16 296 7 429 332 29 46 chr13 32190476 32190714 -87554184 + MIR SINE MIR 28 261 -1 2527 172 84 32 chr13 32191509 32191865 -87553033 - L1MA9 LINE L1 -23 6143 5807 321 26 0 0 chr13 32191865 32191903 -87552995 + (TG)n Simple_repeat Simple_repeat 1 38 0 2527 172 84 32 chr13 32191903 32191918 -87552980 - L1MA9 LINE L1 -359 5807 5794 2246 117 0 0 chr13 32191918 32192225 -87552673 - AluSx SINE Alu -5 307 1 2527 172 84 32 chr13 32192225 32192490 -87552408 - L1MA9 LINE L1 -372 5794 5477 1931 135 3 46 chr13 32193549 32193874 -87551024 - AluSp SINE Alu -2 311 1 275 227 0 30 chr13 32193961 32194027 -87550871 + L2 LINE L2 3250 3313 0 930 291 126 22 chr13 32194325 32194527 -87550371 + L2 LINE L2 2823 3003 -310 1645 226 44 14 chr13 32194527 32194890 -87550008 + MLT1A2 LTR MaLR 1 374 0 930 291 126 22 chr13 32194890 32195131 -87549767 + L2 LINE L2 3003 3312 -1 240 35 0 0 chr13 32195217 32195246 -87549652 + (TAA)n Simple_repeat Simple_repeat 3 31 0 2159 119 7 0 chr13 32195316 32195618 -87549280 + AluSx SINE Alu 1 304 -8 374 292 29 64 chr13 32196089 32196260 -87548638 + MIR3 SINE MIR 37 201 -7 189 243 271 22 chr13 32196555 32196736 -87548162 + MIR SINE MIR 8 233 -29 202 188 31 16 chr13 32197046 32197110 -87547788 + (CA)n Simple_repeat Simple_repeat 2 66 0 241 302 0 0 chr13 32197120 32197183 -87547715 + MER5A DNA MER1_type 127 189 0 242 310 90 1 chr13 32197246 32197378 -87547520 + MIR SINE MIR 6 147 -75 479 307 59 7 chr13 32197837 32197990 -87546908 + MER91A DNA MER1_type 1 161 -35 207 283 0 0 chr13 32198016 32198062 -87546836 + MER91A DNA MER1_type 151 196 0 315 49 0 0 chr13 32198175 32198216 -87546682 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 270 329 94 41 chr13 32198217 32198387 -87546511 - L2 LINE L2 -14 3258 3080 1817 175 3 10 chr13 32198679 32198982 -87545916 + AluJo SINE Alu 1 301 -11 557 90 0 0 chr13 32199097 32199175 -87545723 - MADE1 DNA Mariner -2 78 1 25 51 0 0 chr13 32199183 32199222 -87545676 + AT_rich Low_complexity Low_complexity 1 39 0 1000 203 6 0 chr13 32200011 32200188 -87544710 - MER45A DNA AcHobo 0 178 1 298 257 0 14 chr13 32200499 32200569 -87544329 - MIR3 SINE MIR -3 205 137 1952 66 0 4 chr13 32200880 32201121 -87543777 + AluY SINE Alu 71 310 -1 1064 214 13 9 chr13 32201267 32201496 -87543402 - MIR SINE MIR -21 241 12 676 139 131 0 chr13 32202012 32202134 -87542764 + FLAM_C SINE Alu 1 138 -5 1102 162 25 34 chr13 32202420 32202624 -87542274 - AluJb SINE Alu -21 291 90 1362 130 190 8 chr13 32203564 32203817 -87541081 + AluSg SINE Alu 1 299 -1 2305 109 0 0 chr13 32205459 32205762 -87539136 - AluSx SINE Alu -9 303 1 496 327 18 65 chr13 32206580 32206855 -87538043 - MIR SINE MIR 0 262 1 2618 209 58 21 chr13 32207052 32207675 -87537223 + MER82 DNA MER2_type 8 653 0 2341 172 14 2 chr13 32208830 32209267 -87535631 - L1MB2 LINE L1 -2 6169 5728 1033 293 36 38 chr13 32209393 32209892 -87535006 + L2 LINE L2 2810 3307 -6 948 288 8 4 chr13 32209891 32210134 -87534764 - MIR SINE MIR -13 249 6 * 906 103 7 0 chr13 32212343 32212488 -87532410 - L1MC1 LINE L1 -361 5972 5827 2721 211 54 24 chr13 32212492 32214173 -87530725 + L1MD1 LINE L1 1838 3608 -2932 * 3869 172 55 26 chr13 32214169 32214328 -87530570 + L1MD1 LINE L1 5522 5675 -961 189 0 0 0 chr13 32214328 32214349 -87530549 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 3869 172 55 26 chr13 32214349 32214435 -87530463 + L1MD1 LINE L1 5675 5757 -879 2175 137 0 3 chr13 32214435 32214748 -87530150 + AluSx SINE Alu 1 312 0 3869 172 55 26 chr13 32214748 32215493 -87529405 + L1MD1 LINE L1 5757 6555 -81 2414 42 0 0 chr13 32215773 32216080 -87528818 + AluY SINE Alu 2 308 0 200 288 0 45 chr13 32216807 32216873 -87528025 - L2 LINE L2 0 3313 3251 2346 204 28 59 chr13 32217255 32218637 -87526261 + L1MB8 LINE L1 4856 6178 0 26897 108 10 9 chr13 32218656 32222861 -87522037 + L1P LINE L1 11 4219 -1927 10228 73 0 0 chr13 32223013 32225155 -87519743 + L1PA6 LINE L1 4010 6154 0 231 336 96 0 chr13 32225219 32225323 -87519575 + MIR SINE MIR 20 133 -129 941 296 69 17 chr13 32226499 32226961 -87517937 + MER20B DNA MER1_type 1 486 -297 482 192 130 11 chr13 32227606 32227783 -87517115 + MER20B DNA MER1_type 522 719 -64 422 284 73 65 chr13 32228109 32228347 -87516551 - MIR SINE MIR 0 262 21 354 209 0 0 chr13 32228635 32228702 -87516196 + MER33 DNA MER1_type 2 68 -256 2481 67 3 0 chr13 32228722 32229022 -87515876 + AluSp SINE Alu 1 301 -12 2733 174 25 3 chr13 32229024 32229706 -87515192 + L1MA4 LINE L1 4789 5484 -745 * 3662 88 6 37 chr13 32229701 32230362 -87514536 + L1MA1 LINE L1 5137 5785 -517 602 54 0 3 chr13 32230363 32230585 -87514313 + AluY SINE Alu 1 295 -17 3171 88 10 83 chr13 32230587 32230986 -87513912 + L1MA1 LINE L1 5769 6115 -187 2404 46 0 0 chr13 32230986 32231267 -87513631 - AluY SINE Alu -30 281 1 3171 88 10 83 chr13 32231267 32231443 -87513455 + L1MA1 LINE L1 6115 6302 0 3934 155 27 10 chr13 32231459 32232226 -87512672 + L1MA4 LINE L1 5477 6256 -44 1005 139 71 52 chr13 32232286 32232553 -87512345 + MER33 DNA MER1_type 53 324 0 291 298 58 25 chr13 32232701 32232822 -87512076 + MIR SINE MIR 67 191 -71 182 263 221 0 chr13 32232826 32232921 -87511977 - L2 LINE L2 -1 3312 3197 2334 119 0 0 chr13 32235121 32235432 -87509466 + AluSx SINE Alu 1 311 -1 257 278 56 74 chr13 32235481 32235643 -87509255 + MIR SINE MIR 91 249 -13 348 262 24 0 chr13 32235811 32235895 -87509003 - L2 LINE L2 -1 3271 3186 566 51 0 13 chr13 32235916 32235995 -87508903 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 265 288 54 45 chr13 32236751 32236862 -87508036 + L2 LINE L2 3198 3309 -4 1832 178 68 36 chr13 32238080 32238523 -87506375 + LTR2B LTR ERV1 34 490 0 1674 163 27 14 chr13 32241043 32241337 -87503561 + AluJb SINE Alu 1 298 -14 921 284 93 99 chr13 32241399 32241828 -87503070 + L2 LINE L2 1862 2292 -1022 856 123 7 43 chr13 32241828 32241966 -87502932 - FLAM_C SINE Alu 0 133 1 921 284 93 99 chr13 32241966 32242454 -87502444 + L2 LINE L2 2292 2773 -541 336 225 56 0 chr13 32242503 32242574 -87502324 + MIR SINE MIR 78 152 -56 25 0 0 0 chr13 32243398 32243423 -87501475 + AT_rich Low_complexity Low_complexity 1 25 0 981 150 14 59 chr13 32243981 32244147 -87500751 + L1MB3 LINE L1 5974 6129 -54 2376 78 3 0 chr13 32244147 32244443 -87500455 + AluY SINE Alu 1 297 -14 981 150 14 59 chr13 32244443 32244496 -87500402 + L1MB3 LINE L1 6129 6183 0 2315 103 0 16 chr13 32244654 32244964 -87499934 + AluSg SINE Alu 1 305 -5 1721 175 3 14 chr13 32245534 32245825 -87499073 + AluJb SINE Alu 1 288 -24 2021 158 60 26 chr13 32246611 32247029 -87497869 - MSTB1 LTR MaLR 0 432 1 950 111 53 5 chr13 32249110 32249300 -87495598 - L1MA6 LINE L1 -4 6296 6098 8425 162 35 11 chr13 32249302 32251597 -87493301 - L1MA6 LINE L1 -285 6015 3672 215 309 59 70 chr13 32251756 32251920 -87492978 - L2 LINE L2 -212 3060 2899 1702 177 10 13 chr13 32251920 32252230 -87492668 - AluJo SINE Alu -3 309 1 215 309 59 70 chr13 32252230 32252321 -87492577 - L2 LINE L2 -373 2899 2808 213 244 24 61 chr13 32252906 32252988 -87491910 - L2 LINE L2 -1355 1959 1881 381 352 56 11 chr13 32253600 32253779 -87491119 + MIR SINE MIR 1 187 -75 974 288 136 0 chr13 32255197 32255513 -87489385 + LTR16B LTR ERVL 106 464 0 214 378 0 54 chr13 32255557 32255668 -87489230 - MIR SINE MIR -69 139 35 230 282 14 14 chr13 32255673 32255744 -87489154 - L2 LINE L2 -2 3311 3241 376 355 18 0 chr13 32255753 32255922 -87488976 - L2 LINE L2 -568 2746 2575 181 258 81 0 chr13 32255979 32256041 -87488857 - L2 LINE L2 -31 3282 3216 426 223 32 0 chr13 32256607 32256701 -87488197 + MER58B DNA MER1_type 20 116 -225 1976 109 25 0 chr13 32256702 32256822 -87488076 + AluSc SINE Alu 1 116 -197 180 0 0 0 chr13 32256822 32256842 -87488056 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1976 109 25 0 chr13 32256842 32257027 -87487871 + AluSc SINE Alu 116 313 0 1134 135 79 68 chr13 32257242 32257303 -87487595 - MLT1B LTR MaLR 0 390 331 2211 109 0 0 chr13 32257303 32257612 -87487286 - AluSx SINE Alu 0 309 1 1134 135 79 68 chr13 32257612 32257814 -87487084 - MLT1B LTR MaLR -59 331 122 1023 167 69 0 chr13 32257798 32257972 -87486926 + MLT1A1 LTR MaLR 109 294 -71 * 536 216 0 0 chr13 32258009 32258106 -87486792 + MER58B DNA MER1_type 239 335 -6 260 335 116 8 chr13 32258274 32258516 -87486382 + HAL1b LINE L1 110 377 -971 604 294 35 75 chr13 32258520 32258672 -87486226 + HAL1b LINE L1 437 593 -755 1953 174 46 3 chr13 32258672 32259022 -87485876 - MLT1A1 LTR MaLR 0 365 1 604 294 35 75 chr13 32259022 32259376 -87485522 + HAL1b LINE L1 593 923 -425 998 82 0 0 chr13 32259386 32259521 -87485377 - AluY SINE Alu -3 308 174 409 204 142 28 chr13 32259522 32259698 -87485200 + HAL1b LINE L1 910 1105 -243 213 296 0 0 chr13 32259727 32259771 -87485127 - MER91A DNA MER1_type 0 196 153 215 283 83 0 chr13 32259870 32259930 -87484968 - MER91A DNA MER1_type -114 82 18 1188 106 0 12 chr13 32259938 32260098 -87484800 - AluSg SINE Alu -8 304 147 426 123 0 0 chr13 32260101 32260166 -87484732 - AluSg SINE Alu -253 65 1 1884 245 43 28 chr13 32260213 32260792 -87484106 - L1ME1 LINE L1 -7 6553 5966 769 277 88 22 chr13 32260789 32261297 -87483601 - L1ME1 LINE L1 -4517 2023 1546 * 2138 103 3 20 chr13 32261331 32261632 -87483266 + AluSc SINE Alu 3 298 -11 1429 232 16 19 chr13 32261979 32262381 -87482517 + L1ME1 LINE L1 5769 6161 -5 460 254 37 15 chr13 32262473 32262607 -87482291 - MIR SINE MIR -19 243 107 1904 176 33 43 chr13 32263517 32264074 -87480824 - MLT2A2 LTR ERVL 0 554 1 2721 191 4 4 chr13 32264217 32264703 -87480195 - MER66B LTR ERV1 0 486 1 1969 142 10 0 chr13 32264855 32265144 -87479754 + AluSq SINE Alu 1 292 -21 312 91 0 0 chr13 32265144 32265188 -87479710 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 487 236 31 21 chr13 32265225 32265416 -87479482 + L1MC5 LINE L1 7725 7917 -44 193 296 244 61 chr13 32265666 32265691 -87479207 - L2 LINE L2 -1 3271 3252 1806 136 50 4 chr13 32265691 32265971 -87478927 + AluSx SINE Alu 1 293 -19 193 296 244 61 chr13 32265971 32266060 -87478838 - L2 LINE L2 -20 3252 3136 396 300 198 55 chr13 32266111 32266319 -87478579 + L2 LINE L2 2437 2614 -700 2465 62 10 0 chr13 32266319 32266625 -87478273 - AluY SINE Alu -2 309 1 396 300 198 55 chr13 32266625 32266816 -87478082 + L2 LINE L2 2614 2893 -421 21 71 0 0 chr13 32267027 32267069 -87477829 + AT_rich Low_complexity Low_complexity 1 42 0 364 286 40 16 chr13 32267137 32267263 -87477635 + MIR SINE MIR 107 235 -27 435 266 42 10 chr13 32267443 32267635 -87477263 - L1MC5 LINE L1 -40 7921 7724 2813 106 0 92 chr13 32268123 32268663 -87476235 - MER1A DNA MER1_type -39 494 1 394 226 108 0 chr13 32268812 32268914 -87475984 - MIR SINE MIR -20 242 130 192 360 65 49 chr13 32269135 32269460 -87475438 + L2 LINE L2 2175 2504 -810 1654 203 7 73 chr13 32269485 32269909 -87474989 + MSTD LTR MaLR 1 396 0 606 308 31 18 chr13 32270217 32270441 -87474457 - MIR SINE MIR -24 238 12 191 333 74 0 chr13 32270644 32270725 -87474173 - L2 LINE L2 -5 3267 3181 253 295 58 58 chr13 32270775 32270931 -87473967 - MIR SINE MIR -75 187 32 198 0 0 0 chr13 32271007 32271029 -87473869 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6936 45 2 0 chr13 32271038 32272275 -87472623 - L1PA7 LINE L1 -7 6147 4926 21 0 0 0 chr13 32273094 32273115 -87471783 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 32273279 32273314 -87471584 + AT_rich Low_complexity Low_complexity 1 35 0 450 118 0 0 chr13 32273314 32273390 -87471508 - L1MA2 LINE L1 0 6304 6229 26 0 0 0 chr13 32273417 32273443 -87471455 + AT_rich Low_complexity Low_complexity 1 26 0 658 210 12 119 chr13 32273509 32273752 -87471146 - MER20 DNA MER1_type -2 217 1 248 234 125 0 chr13 32274224 32274288 -87470610 - L2 LINE L2 0 3272 3201 328 294 59 7 chr13 32274383 32274519 -87470379 - MIR SINE MIR -71 191 49 574 167 0 0 chr13 32274525 32274615 -87470283 - LOR1b LTR ERV1 0 461 372 509 213 37 0 chr13 32274627 32274735 -87470163 + LOR1b LTR ERV1 348 459 -2 10290 139 26 13 chr13 32274737 32276457 -87468441 + LOR1a-int LTR ERV1 1 1743 -6377 8223 132 40 22 chr13 32276458 32276800 -87468098 + LOR1a-int LTR ERV1 2621 2955 -3803 2348 97 3 3 chr13 32276800 32277109 -87467789 + AluSc SINE Alu 1 309 0 8223 132 40 22 chr13 32277109 32278251 -87466647 + LOR1a-int LTR ERV1 2955 6166 -592 1610 153 8 0 chr13 32278432 32278680 -87466218 + LOR1a-int LTR ERV1 6830 7079 -1041 960 198 12 0 chr13 32278703 32278870 -87466028 + MER49 LTR ERV1 1 169 -754 720 112 0 19 chr13 32278870 32278977 -87465921 + LOR1a-int LTR ERV1 7995 8099 -21 2740 128 25 73 chr13 32278990 32279512 -87465386 + LOR1a LTR ERV1 1 497 0 497 244 87 17 chr13 32279605 32279835 -87465063 - Charlie2 DNA MER1_type -6 2856 2611 1913 165 0 0 chr13 32279851 32280136 -87464762 + AluJb SINE Alu 1 285 -27 1614 246 49 65 chr13 32280145 32280837 -87464061 + L1MC5 LINE L1 5187 5323 -823 2866 117 26 7 chr13 32280837 32281257 -87463641 + MSTA LTR MaLR 1 428 0 1614 246 49 65 chr13 32281257 32281326 -87463572 + L1MC5 LINE L1 5323 5392 -754 21 57 0 0 chr13 32281528 32281563 -87463335 + AT_rich Low_complexity Low_complexity 1 35 0 1915 223 55 83 chr13 32281773 32282820 -87462078 + L1MC5 LINE L1 6476 7492 -469 341 216 29 29 chr13 32282871 32282973 -87461925 + L1MC5 LINE L1 7481 7582 -379 1796 60 0 21 chr13 32282996 32283230 -87461668 + AluY SINE Alu 82 310 -1 192 77 0 0 chr13 32283348 32283374 -87461524 + (A)n Simple_repeat Simple_repeat 1 26 0 898 223 31 21 chr13 32283384 32283675 -87461223 + L1MC5 LINE L1 7620 7913 -48 470 216 92 78 chr13 32283689 32284059 -87460839 - Charlie2 DNA MER1_type -246 2616 2242 2271 164 40 16 chr13 32284788 32285238 -87459660 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr13 32285343 32285365 -87459533 + AT_rich Low_complexity Low_complexity 1 22 0 3225 167 43 53 chr13 32285409 32286128 -87458770 + LTR8A LTR ERV1 1 712 -15 1511 138 113 3 chr13 32287676 32287959 -87456939 - MER44D DNA MER2_type -25 584 1 640 245 50 0 chr13 32288424 32288583 -87456315 + MIR SINE MIR 71 237 -25 228 290 0 0 chr13 32288596 32288658 -87456240 + (TTG)n Simple_repeat Simple_repeat 3 64 0 321 319 163 43 chr13 32289207 32289859 -87455039 + L2 LINE L2 1837 2566 -748 298 329 77 21 chr13 32290020 32290163 -87454735 + L2 LINE L2 2911 3061 -211 4071 157 62 31 chr13 32291662 32292463 -87452435 + LTR1B LTR ERV1 1 826 0 269 140 20 20 chr13 32292645 32292695 -87452203 + L2 LINE L2 3264 3313 0 2719 58 137 2 chr13 32293275 32293670 -87451228 - LTR7 LTR ERV1 -2 448 1 230 247 241 25 chr13 32293678 32293762 -87451136 - MIR SINE MIR 0 262 197 4175 91 4 0 chr13 32293762 32294314 -87450584 + MER41A LTR ERV1 1 554 0 230 247 241 25 chr13 32294314 32294387 -87450511 - MIR SINE MIR -65 197 71 506 161 54 9 chr13 32294790 32294902 -87449996 + L1MC2 LINE L1 6083 6199 -145 660 132 81 0 chr13 32294971 32295107 -87449791 + L1MC2 LINE L1 6198 6344 0 503 295 61 64 chr13 32295573 32295868 -87449030 + L2 LINE L2 3020 3313 0 240 143 18 36 chr13 32296679 32296735 -87448163 - L1MB3 LINE L1 -20 6163 6109 24 0 0 0 chr13 32297171 32297195 -87447703 + AT_rich Low_complexity Low_complexity 1 24 0 368 155 48 48 chr13 32297203 32297371 -87447527 + (TTATA)n Simple_repeat Simple_repeat 5 172 0 314 184 34 45 chr13 32297314 32297493 -87447405 + (TTA)n Simple_repeat Simple_repeat 3 179 0 * 113 81 0 0 chr13 32297493 32297753 -87447145 + AT_rich Low_complexity Low_complexity 1 260 0 189 107 0 0 chr13 32297796 32297824 -87447074 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1067 118 82 9 chr13 32300300 32300520 -87444378 + AluSx SINE Alu 32 267 -45 1262 77 0 6 chr13 32300666 32300847 -87444051 + (TTC)n Simple_repeat Simple_repeat 1 180 0 183 80 0 0 chr13 32300847 32300872 -87444026 + (TCTCCC)n Simple_repeat Simple_repeat 4 28 0 1651 164 61 3 chr13 32300874 32301167 -87443731 - AluJo SINE Alu -2 310 1 799 174 31 31 chr13 32301174 32301335 -87443563 - MLT1A2 LTR MaLR -213 161 1 1563 158 31 4 chr13 32302198 32302457 -87442441 - AluSq SINE Alu -7 306 41 18966 55 5 2 chr13 32302457 32304913 -87439985 - L1PA6 LINE L1 -946 5200 2740 7067 57 0 2 chr13 32304913 32305885 -87439013 + L1PA6 LINE L1 5182 6151 -3 290 203 0 0 chr13 32305903 32305962 -87438936 - AluSq SINE Alu -249 59 1 284 319 141 5 chr13 32306258 32306443 -87438455 - MIR SINE MIR -6 256 47 5745 184 55 46 chr13 32306959 32307959 -87436939 + Charlie1a DNA MER1_type 6 1023 -1738 1670 167 47 0 chr13 32307959 32308234 -87436664 + AluJb SINE Alu 11 298 -14 5745 184 55 46 chr13 32308234 32308664 -87436234 + Charlie1a DNA MER1_type 1023 1448 -7 2432 154 14 30 chr13 32308702 32309143 -87435755 - Tigger2a DNA MER2_type 0 434 1 235 314 93 42 chr13 32309245 32309363 -87435535 + MLT1K LTR MaLR 66 189 -399 287 264 107 16 chr13 32309419 32309540 -87435358 + MLT1K LTR MaLR 295 426 -162 2091 145 0 49 chr13 32309866 32310231 -87434667 - MER7A DNA MER2_type 0 346 2 878 291 89 54 chr13 32311564 32311993 -87432905 + MLT1K LTR MaLR 85 528 -60 2060 131 0 10 chr13 32312147 32312444 -87432454 + AluSx SINE Alu 1 294 -18 2158 129 0 3 chr13 32313578 32313889 -87431009 - AluSq SINE Alu -3 310 1 1235 150 5 0 chr13 32313935 32314128 -87430770 + MLT1C LTR MaLR 272 465 -2 844 171 21 0 chr13 32314131 32314271 -87430627 + MER58B DNA MER1_type 194 336 -5 312 297 62 23 chr13 32316194 32316322 -87428576 + MIR SINE MIR 61 193 -69 222 191 0 0 chr13 32317175 32317222 -87427676 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 215 100 75 12 chr13 32317257 32317337 -87427561 + (TA)n Simple_repeat Simple_repeat 2 86 0 24 77 0 0 chr13 32317345 32317397 -87427501 + AT_rich Low_complexity Low_complexity 1 52 0 562 165 0 0 chr13 32317797 32317888 -87427010 + MER33 DNA MER1_type 29 119 -205 972 176 0 33 chr13 32317915 32318097 -87426801 + FRAM SINE Alu 1 176 0 725 133 19 13 chr13 32318099 32318257 -87426641 + MER33 DNA MER1_type 139 297 -27 261 0 0 0 chr13 32319130 32319159 -87425739 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1178 124 173 24 chr13 32320077 32320326 -87424572 + MER31A LTR ERV1 1 286 -199 952 105 13 0 chr13 32320326 32320478 -87424420 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 853 95 0 0 chr13 32320505 32320610 -87424288 - AluSq/x SINE Alu -207 105 1 769 135 24 0 chr13 32320617 32320743 -87424155 + MER31A LTR ERV1 287 415 -70 2353 154 21 34 chr13 32323325 32323799 -87421099 - L1MC1 LINE L1 -5 6328 5861 295 315 0 0 chr13 32323874 32323963 -87420935 + MIR SINE MIR 75 163 -99 291 316 77 0 chr13 32323989 32324106 -87420792 + MIR SINE MIR 120 245 -17 825 336 33 4 chr13 32324139 32324410 -87420488 + LTR33 LTR ERVL 1 279 -242 1580 139 14 11 chr13 32325833 32326113 -87418785 - L1MA8 LINE L1 0 6291 6011 1882 160 0 3 chr13 32326151 32326439 -87418459 - AluJo SINE Alu -22 290 4 32 0 0 0 chr13 32326602 32326634 -87418264 + AT_rich Low_complexity Low_complexity 1 32 0 314 383 8 0 chr13 32327298 32327418 -87417480 - L1M4 LINE L1 -2311 3835 3715 268 276 0 0 chr13 32327522 32327580 -87417318 + L2 LINE L2 3251 3308 -5 709 312 24 12 chr13 32327679 32327926 -87416972 + MIR SINE MIR 13 262 0 38 22 0 0 chr13 32328847 32328892 -87416006 + AT_rich Low_complexity Low_complexity 1 45 0 188 159 0 23 chr13 32329289 32329333 -87415565 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 232 109 0 0 chr13 32329339 32329385 -87415513 + LTR66 LTR ERVL 394 439 -171 1549 190 10 17 chr13 32329397 32329692 -87415206 - AluJo SINE Alu -19 293 1 351 234 32 11 chr13 32330033 32330127 -87414771 + MIR SINE MIR 78 173 -89 251 353 133 47 chr13 32330606 32331028 -87413870 - L2 LINE L2 0 3272 2815 232 266 48 77 chr13 32331275 32331482 -87413416 - L1ME3A LINE L1 -8 6162 5962 2247 229 86 57 chr13 32331622 32332072 -87412826 - L1MC5 LINE L1 -481 7480 7045 2278 133 37 3 chr13 32332072 32332424 -87412474 + THE1B LTR MaLR 1 364 0 2247 229 86 57 chr13 32332424 32332954 -87411944 - L1MC5 LINE L1 -916 7045 6476 243 385 27 27 chr13 32333317 32333616 -87411282 - HAL1b LINE L1 -834 514 216 2170 114 3 10 chr13 32336053 32336351 -87408547 + AluSq SINE Alu 3 298 -15 185 362 0 17 chr13 32338326 32338384 -87406514 + L2 LINE L2 3211 3267 -5 245 312 201 0 chr13 32338515 32338669 -87406229 - MIR SINE MIR -21 241 57 2392 77 0 0 chr13 32339891 32340188 -87404710 - AluY SINE Alu -14 297 1 1887 214 122 10 chr13 32340258 32340856 -87404042 + L1M4 LINE L1 4349 5013 -1133 743 172 59 18 chr13 32340964 32341133 -87403765 + L1M4 LINE L1 5166 5341 -805 459 180 22 0 chr13 32341218 32341307 -87403591 - Tigger7 DNA MER2_type -1 2586 2496 * 1254 175 73 14 chr13 32341306 32341756 -87403142 - Tigger7 DNA MER2_type -212 521 8 370 343 181 16 chr13 32341781 32342146 -87402752 - L2 LINE L2 -1842 1472 1048 246 279 16 0 chr13 32344998 32345059 -87399839 - MER5A DNA MER1_type -120 69 8 2318 80 6 13 chr13 32345995 32346170 -87398728 - AluY SINE Alu -2 309 135 2046 108 3 17 chr13 32346170 32346489 -87398409 - AluSp SINE Alu 0 313 1 2318 80 6 13 chr13 32346489 32346624 -87398274 - AluY SINE Alu -176 135 1 2481 132 27 41 chr13 32346760 32347198 -87397700 + MSTB1 LTR MaLR 1 432 0 995 101 14 0 chr13 32347880 32348018 -87396880 - AluSg/x SINE Alu -17 293 154 22 35 0 0 chr13 32349177 32349206 -87395692 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 32349849 32349870 -87395028 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 32350035 32350070 -87394828 + AT_rich Low_complexity Low_complexity 1 35 0 602 233 30 8 chr13 32350586 32350719 -87394179 + MER5A DNA MER1_type 12 147 -42 12246 139 23 4 chr13 32350751 32352673 -87392225 - Tigger4(Zombi) DNA MER2_type -769 1962 5 1823 211 43 85 chr13 32352677 32352811 -87392087 + L1ME4a LINE L1 2138 2276 -3870 2054 139 3 0 chr13 32352811 32353114 -87391784 - AluSx SINE Alu 0 312 9 1823 211 43 85 chr13 32353114 32353705 -87391193 + L1ME4a LINE L1 2276 2832 -3314 443 189 106 23 chr13 32353710 32353842 -87391056 + L1MB7 LINE L1 6033 6175 -9 381 297 116 47 chr13 32353949 32354269 -87390629 + L1ME4a LINE L1 4479 4820 -1326 275 265 120 72 chr13 32354367 32354741 -87390157 + L1ME4a LINE L1 5617 6008 -113 27 29 0 0 chr13 32354766 32354800 -87390098 + AT_rich Low_complexity Low_complexity 1 34 0 2322 88 0 0 chr13 32354808 32355102 -87389796 - AluSc SINE Alu -15 294 1 22 80 0 0 chr13 32355184 32355234 -87389664 + AT_rich Low_complexity Low_complexity 1 50 0 665 255 62 21 chr13 32355608 32355800 -87389098 + MIR SINE MIR 63 262 0 246 325 58 52 chr13 32355830 32355984 -87388914 - MIR SINE MIR -5 257 103 418 248 12 56 chr13 32356121 32356288 -87388610 - MER5A DNA MER1_type -21 157 7 215 325 65 26 chr13 32356360 32356437 -87388461 - MIR SINE MIR -110 98 19 282 344 48 43 chr13 32356867 32357053 -87387845 + MIR SINE MIR 20 206 -56 229 190 17 35 chr13 32357274 32357332 -87387566 + MER45B DNA AcHobo 752 808 -232 1508 185 11 21 chr13 32357512 32357798 -87387100 - AluJo SINE Alu -21 291 9 1080 158 77 0 chr13 32357991 32358174 -87386724 - AluJb SINE Alu -11 301 105 220 316 0 0 chr13 32358397 32358454 -87386444 + CT-rich Low_complexity Low_complexity 3 59 0 220 330 62 10 chr13 32358782 32358879 -87386019 + L2 LINE L2 3164 3265 -7 676 221 51 67 chr13 32359419 32359614 -87385284 + MIR SINE MIR 66 257 -5 26 0 0 0 chr13 32359614 32359640 -87385258 + AT_rich Low_complexity Low_complexity 1 26 0 194 115 0 66 chr13 32359765 32359826 -87385072 + (GAAA)n Simple_repeat Simple_repeat 4 60 0 1595 208 38 35 chr13 32360633 32360790 -87384108 + MLT1A2 LTR MaLR 11 166 -208 2178 102 0 10 chr13 32360790 32361085 -87383813 + AluSg SINE Alu 1 292 -18 1595 208 38 35 chr13 32361085 32361273 -87383625 + MLT1A2 LTR MaLR 166 357 -17 299 341 67 0 chr13 32363578 32363713 -87381185 + L2 LINE L2 2916 3059 -213 22 0 0 0 chr13 32363755 32363777 -87381121 + AT_rich Low_complexity Low_complexity 1 22 0 4978 163 50 30 chr13 32364241 32365155 -87379743 + L1MA4 LINE L1 4393 5288 -1012 2114 105 6 53 chr13 32365155 32365478 -87379420 + AluSx SINE Alu 1 308 -4 4978 163 50 30 chr13 32365478 32365961 -87378937 + L1MA4 LINE L1 5288 5834 -466 2369 76 17 0 chr13 32365961 32366263 -87378635 + AluY SINE Alu 5 311 0 4978 163 50 30 chr13 32366263 32366572 -87378326 + L1MA4 LINE L1 5834 6135 -165 192 77 0 0 chr13 32368176 32368202 -87376696 + (CA)n Simple_repeat Simple_repeat 1 26 0 300 264 298 6 chr13 32368680 32368846 -87376052 + MIR SINE MIR 1 223 -39 2348 83 0 13 chr13 32368846 32369158 -87375740 + AluY SINE Alu 1 308 -3 300 264 298 6 chr13 32369158 32369169 -87375729 + MIR SINE MIR 223 230 -32 2137 107 0 7 chr13 32369169 32369459 -87375439 + AluY SINE Alu 1 288 -23 1243 112 12 0 chr13 32369460 32369630 -87375268 + AluSg/x SINE Alu 133 304 -8 462 200 33 33 chr13 32369878 32369998 -87374900 + MER94 DNA DNA 15 134 0 469 305 51 13 chr13 32370578 32370784 -87374114 - MIR SINE MIR -44 218 7 699 56 0 11 chr13 32371552 32371642 -87373256 - MER4E LTR ERV1 0 766 678 649 116 42 0 chr13 32371692 32371787 -87373111 - MER4B LTR ERV1 -85 525 427 2689 110 6 88 chr13 32371854 32372353 -87372545 - MER4B LTR ERV1 -152 458 1 491 296 140 37 chr13 32372486 32372837 -87372061 - L2 LINE L2 0 3313 2927 300 328 17 17 chr13 32372833 32372949 -87371949 - L2 LINE L2 -25 3247 3132 * 2221 165 15 22 chr13 32373068 32373474 -87371424 + MER57A LTR ERV1 1 403 0 2363 118 25 3 chr13 32374374 32374739 -87370159 - MER39B LTR ERV1 -23 630 258 697 182 0 47 chr13 32374740 32374888 -87370010 - FLAM_C SINE Alu -2 141 1 1920 98 8 0 chr13 32374888 32375154 -87369744 - MER39B LTR ERV1 -385 268 1 323 256 83 38 chr13 32375163 32375296 -87369602 - MIR SINE MIR -14 248 110 291 213 43 64 chr13 32376153 32376247 -87368651 - MIR SINE MIR -150 112 21 21 0 0 0 chr13 32376342 32376363 -87368535 + AT_rich Low_complexity Low_complexity 1 21 0 399 41 0 0 chr13 32376659 32376708 -87368190 + (CA)n Simple_repeat Simple_repeat 2 50 0 442 288 29 14 chr13 32377677 32377816 -87367082 + MIR SINE MIR 16 156 -106 23 40 0 0 chr13 32378286 32378311 -87366587 + AT_rich Low_complexity Low_complexity 1 25 0 970 280 107 20 chr13 32378660 32379142 -87365756 + MLT1H LTR MaLR 1 537 -12 24 77 0 0 chr13 32380469 32380521 -87364377 + AT_rich Low_complexity Low_complexity 1 52 0 26 0 0 0 chr13 32380653 32380679 -87364219 + AT_rich Low_complexity Low_complexity 1 26 0 224 194 32 0 chr13 32381497 32381559 -87363339 + (TAAA)n Simple_repeat Simple_repeat 4 67 0 383 265 82 14 chr13 32381857 32382004 -87362894 - MIR SINE MIR -94 168 12 319 243 27 14 chr13 32382028 32382102 -87362796 + MIR SINE MIR 40 114 -148 243 287 43 11 chr13 32384976 32385070 -87359828 + L1ME LINE L1 5524 5620 -501 612 80 0 0 chr13 32385595 32385683 -87359215 + L1PB2 LINE L1 5949 6036 -115 2410 134 36 3 chr13 32387659 32388048 -87356850 + MER57A LTR ERV1 2 403 0 844 239 96 31 chr13 32388125 32388447 -87356451 - MER2 DNA MER2_type 0 344 2 22 0 0 0 chr13 32388704 32388726 -87356172 + AT_rich Low_complexity Low_complexity 1 22 0 1721 166 0 21 chr13 32389246 32389535 -87355363 + AluJb SINE Alu 14 296 -16 2158 123 3 3 chr13 32389693 32389995 -87354903 - AluSg SINE Alu -8 302 1 2275 157 56 7 chr13 32390222 32390654 -87354244 + MSTB2 LTR MaLR 1 453 -4 1950 136 0 36 chr13 32391011 32391313 -87353585 - AluJo SINE Alu -21 291 1 1681 213 56 2 chr13 32392324 32392733 -87352165 + L1MC2 LINE L1 4811 5241 -905 * 5735 148 22 6 chr13 32392732 32394413 -87350485 + L1PB3 LINE L1 4441 6148 -6 32 0 0 0 chr13 32394415 32394447 -87350451 + AT_rich Low_complexity Low_complexity 1 32 0 5426 165 44 18 chr13 32394447 32395515 -87349383 + L1MC2 LINE L1 5237 6331 -13 400 249 249 35 chr13 32396632 32396728 -87348170 - MIR SINE MIR -11 251 177 2410 76 0 7 chr13 32396728 32397029 -87347869 + AluY SINE Alu 11 309 -2 400 249 249 35 chr13 32397029 32397133 -87347765 - MIR SINE MIR -85 177 8 1600 165 25 38 chr13 32398634 32398949 -87345949 - L1M3 LINE L1 -410 5773 5463 2340 122 51 25 chr13 32398949 32399341 -87345557 - MSTA LTR MaLR 0 428 27 357 127 14 42 chr13 32399342 32399413 -87345485 - L1M3 LINE L1 -859 5453 5385 636 165 0 0 chr13 32399559 32399656 -87345242 - AluJ/FLAM SINE Alu -213 99 3 199 114 0 0 chr13 32399730 32399765 -87345133 - MER5C DNA MER1_type -57 267 233 439 272 53 0 chr13 32399809 32399923 -87344975 - MER5C DNA MER1_type -204 120 1 747 288 60 21 chr13 32400172 32400293 -87344605 + MIR SINE MIR 17 132 -130 2187 128 0 3 chr13 32400293 32400597 -87344301 + AluSq SINE Alu 1 303 -10 747 288 60 21 chr13 32400597 32400711 -87344187 + MIR SINE MIR 132 262 0 507 256 141 13 chr13 32400705 32400932 -87343966 - L1M4 LINE L1 -2978 3168 2913 * 1095 215 30 70 chr13 32400937 32401374 -87343524 - MLT1D LTR MaLR 0 505 10 200 135 27 0 chr13 32401490 32401527 -87343371 + A-rich Low_complexity Low_complexity 1 38 0 2261 107 3 0 chr13 32401571 32401871 -87343027 - AluY SINE Alu -10 301 1 391 297 67 22 chr13 32401901 32402196 -87342702 + L1ME LINE L1 4147 4478 -1668 1739 185 11 0 chr13 32402196 32402482 -87342416 - AluJo SINE Alu -23 289 1 391 297 67 22 chr13 32402482 32402721 -87342177 + L1ME LINE L1 4478 4705 -1441 2530 33 0 20 chr13 32403080 32403380 -87341518 + AluY SINE Alu 1 294 -17 1181 276 68 43 chr13 32405234 32406164 -87338734 + L1MC4 LINE L1 7090 8042 0 259 289 56 0 chr13 32406273 32406363 -87338535 + MIR SINE MIR 59 153 -109 293 361 83 0 chr13 32406741 32406874 -87338024 - MIR3 SINE MIR -62 146 3 2244 93 0 3 chr13 32407238 32407529 -87337369 - AluY SINE Alu -11 300 11 2213 162 28 45 chr13 32407742 32407769 -87337129 + LOR1b LTR ERV1 1 27 -434 1736 168 42 30 chr13 32407769 32408102 -87336796 + MER1B DNA MER1_type 1 337 0 2213 162 28 45 chr13 32408102 32408543 -87336355 + LOR1b LTR ERV1 27 461 0 424 289 105 76 chr13 32408579 32409485 -87335413 + L1MEd LINE L1 326 1257 -4862 328 270 143 0 chr13 32409469 32409658 -87335240 + HAL1 LINE L1 1351 1566 -941 * 2120 140 0 19 chr13 32409658 32409973 -87334925 + AluSx SINE Alu 1 309 -3 421 132 44 0 chr13 32410103 32410171 -87334727 + AluJ/FLAM SINE Alu 1 71 -241 364 295 133 20 chr13 32410514 32410816 -87334082 + L1ME LINE L1 5302 5637 -529 2469 71 0 7 chr13 32410817 32411127 -87333771 - AluY SINE Alu -3 308 1 180 288 51 34 chr13 32413315 32413374 -87331524 - L2 LINE L2 -7 3265 3206 306 260 14 0 chr13 32413474 32413547 -87331351 - MER91B DNA MER1_type 0 190 117 299 215 139 90 chr13 32413549 32413693 -87331205 - MER91B DNA MER1_type -16 174 24 261 303 156 8 chr13 32414447 32414569 -87330329 - MIR SINE MIR -56 206 67 234 0 0 0 chr13 32415530 32415556 -87329342 + (TG)n Simple_repeat Simple_repeat 2 27 0 695 333 148 30 chr13 32415715 32416661 -87328237 - L2 LINE L2 -13 3300 2236 189 262 0 0 chr13 32417365 32417426 -87327472 + GA-rich Low_complexity Low_complexity 2 62 0 * 308 205 25 33 chr13 32417423 32417545 -87327353 + G-rich Low_complexity Low_complexity 5 125 0 207 167 0 0 chr13 32417537 32417579 -87327319 + GA-rich Low_complexity Low_complexity 4 45 0 * 291 367 24 101 chr13 32417885 32418223 -87326675 - L2 LINE L2 -1 3271 2960 258 281 110 0 chr13 32418479 32418561 -87326337 + MIR SINE MIR 166 256 -6 313 283 141 13 chr13 32418733 32418970 -87325928 - MLT1E2 LTR MaLR -369 257 6 406 325 154 31 chr13 32418977 32419359 -87325539 - L2 LINE L2 -15 3298 2870 522 223 97 34 chr13 32419524 32419699 -87325199 - L2 LINE L2 -11 3302 3117 322 380 22 0 chr13 32419956 32420140 -87324758 + L1ME2 LINE L1 179 366 -6030 295 233 17 89 chr13 32420780 32421016 -87323882 + L1ME2 LINE L1 2048 2266 -4130 1813 152 28 3 chr13 32421024 32421313 -87323585 + AluSq SINE Alu 1 296 -17 1425 215 65 123 chr13 32421335 32421513 -87323385 + L1ME2 LINE L1 2589 2776 -3439 2335 115 0 0 chr13 32421513 32421825 -87323073 - AluSx SINE Alu 0 312 1 1425 215 65 123 chr13 32421825 32422638 -87322260 + L1ME2 LINE L1 2776 3635 -2580 2450 69 0 10 chr13 32422638 32422944 -87321954 + AluY SINE Alu 1 303 -8 1425 215 65 123 chr13 32422944 32423045 -87321853 + L1ME2 LINE L1 3635 3740 -2475 2334 85 3 0 chr13 32423045 32423340 -87321558 - AluSq SINE Alu -10 303 8 1425 215 65 123 chr13 32423340 32423608 -87321290 + L1ME2 LINE L1 3740 3872 -2343 1861 89 89 7 chr13 32423611 32423882 -87321016 + AluY SINE Alu 14 306 -5 2419 80 0 0 chr13 32423882 32424184 -87320714 + AluSc SINE Alu 1 302 -7 1109 123 7 0 chr13 32424186 32424365 -87320533 + AluSg/x SINE Alu 128 307 0 521 279 93 37 chr13 32424526 32424741 -87320157 + L1ME2 LINE L1 5073 5299 -916 1508 200 59 75 chr13 32425002 32425562 -87319336 + L1ME2 LINE L1 5360 5910 -323 182 213 0 21 chr13 32426033 32426080 -87318818 - MIR SINE MIR -157 105 60 2474 73 7 0 chr13 32426534 32426837 -87318061 + AluSc SINE Alu 3 307 -2 5375 125 35 19 chr13 32427134 32428121 -87316777 + L1MA4 LINE L1 5290 6292 -8 2977 161 40 0 chr13 32429452 32430031 -87314867 + L1MB3 LINE L1 5572 6173 -10 298 145 58 0 chr13 32430241 32430310 -87314588 - AluSc SINE Alu -12 287 215 396 0 0 0 chr13 32430410 32430454 -87314444 + (CA)n Simple_repeat Simple_repeat 2 45 0 316 298 64 64 chr13 32431019 32431190 -87313708 + MIR SINE MIR 22 192 -70 230 310 108 19 chr13 32432370 32432528 -87312370 - MIR SINE MIR -79 183 12 1678 171 14 10 chr13 32433536 32433828 -87311070 - AluJo SINE Alu -19 293 1 252 281 56 11 chr13 32433849 32433938 -87310960 - L3b LINE CR1 -340 1243 1151 239 208 14 83 chr13 32434786 32434858 -87310040 + MIR3 SINE MIR 101 167 -41 220 326 96 30 chr13 32435715 32435851 -87309047 - MIR3 SINE MIR -73 135 14 207 167 0 0 chr13 32435986 32436028 -87308870 + GA-rich Low_complexity Low_complexity 3 44 0 346 256 67 110 chr13 32436540 32436756 -87308142 - MIR SINE MIR -8 254 44 180 47 47 47 chr13 32436789 32436832 -87308066 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 318 87 0 0 chr13 32436947 32436993 -87307905 + (CA)n Simple_repeat Simple_repeat 1 46 0 417 20 0 0 chr13 32437247 32437297 -87307601 + (TG)n Simple_repeat Simple_repeat 2 51 0 679 137 77 11 chr13 32437729 32437911 -87306987 + Charlie5 DNA MER1_type 2426 2619 0 219 200 27 13 chr13 32438663 32438738 -87306160 + (CTCA)n Simple_repeat Simple_repeat 4 79 0 237 289 0 62 chr13 32438742 32438839 -87306059 - L2 LINE L2 -2 3270 3180 7518 44 0 1 chr13 32438966 32439966 -87304932 - L1P LINE L1 -2789 3357 2359 3755 38 0 4 chr13 32439966 32440442 -87304456 + L1PA5 LINE L1 5385 5858 -296 687 179 0 14 chr13 32441254 32441394 -87303504 - MER104 DNA Tc2 -15 165 28 2182 163 12 15 chr13 32441475 32441879 -87303019 + MER57A LTR ERV1 1 403 0 355 268 52 57 chr13 32441983 32442177 -87302721 + L1MC5 LINE L1 7695 7887 -74 475 253 124 21 chr13 32442552 32442738 -87302160 - MIR SINE MIR 0 262 58 2396 105 0 0 chr13 32443204 32443510 -87301388 - AluSg SINE Alu -4 306 1 395 316 53 8 chr13 32443914 32444047 -87300851 + L3 LINE CR1 411 549 -1028 1241 319 85 12 chr13 32444093 32444598 -87300300 - L3 LINE CR1 -636 941 400 1526 194 11 0 chr13 32445143 32445450 -87299448 + AluJo SINE Alu 17 326 0 5238 43 5 0 chr13 32445578 32446211 -87298687 + L1PA8 LINE L1 5527 6162 -10 269 318 88 36 chr13 32446465 32446657 -87298241 - L3 LINE CR1 -1128 449 248 2086 119 14 0 chr13 32447227 32447513 -87297385 - AluSc SINE Alu -19 290 1 2263 107 10 0 chr13 32447528 32447836 -87297062 - AluSx SINE Alu -1 311 1 765 85 57 0 chr13 32451543 32451649 -87293249 - AluSg/x SINE Alu -2 307 196 1143 179 85 123 chr13 32451801 32452191 -87292707 + MER4C LTR ERV1 91 465 0 223 305 60 131 chr13 32452502 32452938 -87291960 + L2 LINE L2 2851 3255 -17 205 288 93 42 chr13 32453747 32453865 -87291033 + MIR SINE MIR 16 139 -69 2158 178 37 16 chr13 32454715 32455143 -87289755 + LTR23 LTR ERV1 1 437 0 204 156 0 188 chr13 32455424 32455488 -87289410 - L2 LINE L2 0 3272 3221 188 93 47 47 chr13 32455617 32455660 -87289238 + L3 LINE CR1 1060 1102 -475 22 35 0 0 chr13 32456881 32456910 -87287988 + AT_rich Low_complexity Low_complexity 1 29 0 2416 78 7 3 chr13 32457177 32457483 -87287415 - AluY SINE Alu -4 307 1 1852 161 0 3 chr13 32457485 32457776 -87287122 - AluJb SINE Alu -20 292 3 2643 170 27 29 chr13 32457882 32458406 -87286492 - L1MC2 LINE L1 -2 6342 5820 3330 165 185 31 chr13 32458409 32459722 -87285176 - pTR5 LTR ERV1 0 2438 747 1433 128 60 4 chr13 32459722 32459957 -87284941 - L1MC2 LINE L1 -518 5826 5579 788 250 72 119 chr13 32460174 32460749 -87284149 + MLT1H1 LTR MaLR 1 555 0 2369 74 0 10 chr13 32460870 32461169 -87283729 - AluY SINE Alu -15 296 1 33 0 0 0 chr13 32461171 32461204 -87283694 + AT_rich Low_complexity Low_complexity 1 33 0 269 293 114 32 chr13 32461754 32461877 -87283021 - L2 LINE L2 -4 3268 3136 1903 133 14 7 chr13 32462761 32463040 -87281858 - AluSx SINE Alu -19 293 13 585 311 10 5 chr13 32463106 32463299 -87281599 + Charlie8 DNA MER1_type 1 194 -2223 406 235 70 0 chr13 32463698 32463813 -87281085 + MER94 DNA DNA 12 134 0 648 343 85 50 chr13 32463813 32463977 -87280921 + L2 LINE L2 1779 1936 -1378 2118 125 0 10 chr13 32463977 32464280 -87280618 - AluSx SINE Alu -4 308 9 648 343 85 50 chr13 32464280 32464788 -87280110 + L2 LINE L2 1936 2474 -840 352 314 131 0 chr13 32465361 32465536 -87279362 + L2 LINE L2 2470 2667 -647 403 145 0 0 chr13 32466706 32466768 -87278130 - AluSg/x SINE Alu -85 227 166 610 180 22 43 chr13 32467490 32467629 -87277269 + LTR45 LTR ERV1 390 525 0 2332 90 6 10 chr13 32467717 32468028 -87276870 + AluSp SINE Alu 1 310 -3 1365 201 56 88 chr13 32468548 32469095 -87275803 + MER39 LTR ERV1 5 705 -2 234 209 0 0 chr13 32469618 32469661 -87275237 + LTR30 LTR ERV1 1 43 -679 1027 111 19 167 chr13 32469666 32469936 -87274962 + LTR12 LTR ERV1 49 278 -436 325 237 31 21 chr13 32469936 32470033 -87274865 + LTR30 LTR ERV1 546 643 -79 713 130 0 0 chr13 32470035 32470135 -87274763 + LTR12 LTR ERV1 615 714 0 648 193 0 62 chr13 32470472 32470617 -87274281 + MLT1E2 LTR MaLR 69 204 -420 1570 235 74 17 chr13 32470620 32471092 -87273806 + MER84 LTR ERVI 1 499 -8 1079 265 12 4 chr13 32471224 32471481 -87273417 + MLT1E2 LTR MaLR 368 626 0 1714 152 7 0 chr13 32471700 32471969 -87272929 + AluSq SINE Alu 9 279 -34 22 0 0 0 chr13 32472134 32472156 -87272742 + AT_rich Low_complexity Low_complexity 1 22 0 312 252 108 9 chr13 32472289 32472301 -87272597 - L1MA10 LINE L1 0 6334 6323 2572 228 41 35 chr13 32472301 32472982 -87271916 - L1ME1 LINE L1 -3 6163 5479 216 0 0 0 chr13 32473351 32473375 -87271523 + (A)n Simple_repeat Simple_repeat 1 24 0 3214 180 40 32 chr13 32473483 32474200 -87270698 - L1MB7 LINE L1 -5 6179 5457 2562 14 3 0 chr13 32474204 32474507 -87270391 - AluYa5 SINE Alu 0 304 1 456 51 0 0 chr13 32475436 32475495 -87269403 + (TA)n Simple_repeat Simple_repeat 2 60 0 222 150 0 0 chr13 32475594 32475634 -87269264 + (TA)n Simple_repeat Simple_repeat 2 41 0 232 156 0 0 chr13 32475642 32475687 -87269211 - L1MC4 LINE L1 -1339 6703 6659 24 0 0 0 chr13 32477370 32477394 -87267504 + AT_rich Low_complexity Low_complexity 1 24 0 193 244 0 0 chr13 32477557 32477598 -87267300 + L2 LINE L2 3261 3301 -12 933 133 0 15 chr13 32477774 32477951 -87266947 - FLAM_C SINE Alu 0 175 1 190 330 70 20 chr13 32478024 32478124 -87266774 - L2 LINE L2 0 3272 3168 310 147 29 0 chr13 32478175 32478243 -87266655 + (TA)n Simple_repeat Simple_repeat 1 70 0 209 319 147 56 chr13 32478289 32478521 -87266377 - L2 LINE L2 -216 3056 2804 339 214 262 16 chr13 32478879 32479005 -87265893 + MER5B DNA MER1_type 22 178 0 225 266 177 13 chr13 32479048 32479127 -87265771 - MIR SINE MIR -94 114 23 1225 193 15 50 chr13 32480100 32480359 -87264539 + MIR SINE MIR 13 262 0 2148 98 31 3 chr13 32480488 32480774 -87264124 + AluSx SINE Alu 1 294 -18 484 72 48 84 chr13 32480922 32481005 -87263893 + MADE1 DNA Mariner 1 80 0 545 325 11 26 chr13 32481967 32482158 -87262740 - MIR3 SINE MIR -11 197 10 233 29 29 0 chr13 32482257 32482291 -87262607 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1664 123 119 0 chr13 32482382 32482634 -87262264 + AluSx SINE Alu 1 282 -30 1993 114 0 0 chr13 32482707 32482969 -87261929 + AluSq SINE Alu 39 300 -13 2424 71 0 10 chr13 32483741 32484051 -87260847 - AluY SINE Alu -4 307 1 291 340 72 7 chr13 32484554 32484707 -87260191 - MIR SINE MIR 0 262 100 651 278 9 57 chr13 32484730 32484918 -87259980 - MIR SINE MIR -48 214 36 2180 93 0 54 chr13 32484918 32485231 -87259667 - AluSg1 SINE Alu -13 296 1 651 278 9 57 chr13 32485231 32485254 -87259644 - MIR SINE MIR -226 36 13 2096 126 3 16 chr13 32485953 32486270 -87258628 + AluSq SINE Alu 1 313 0 1998 116 3 39 chr13 32487028 32487338 -87257560 - AluSx SINE Alu -9 303 5 1795 99 12 24 chr13 32488061 32488314 -87256584 + AluSq SINE Alu 1 250 -63 1189 54 7 7 chr13 32488314 32488462 -87256436 + MER4B LTR ERV1 463 610 0 396 268 19 79 chr13 32488656 32488973 -87255925 - HAL1 LINE L1 -1333 1174 877 330 239 112 9 chr13 32489099 32489312 -87255586 + L1ME LINE L1 5568 5854 -267 1026 195 41 1 chr13 32489757 32490079 -87254819 - MER93b LTR ERV1 0 373 6 1977 150 0 10 chr13 32490139 32490439 -87254459 - AluSx SINE Alu -15 297 1 1682 146 58 85 chr13 32490882 32491260 -87253638 + L1MB1 LINE L1 5693 6060 -108 251 325 0 17 chr13 32491750 32491870 -87253028 + (TA)n Simple_repeat Simple_repeat 1 118 0 207 184 41 0 chr13 32491977 32492026 -87252872 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 854 233 115 84 chr13 32492559 32492911 -87251987 - LTR48B LTR ERV1 0 595 215 1813 97 0 12 chr13 32492911 32493158 -87251740 - AluSx SINE Alu -15 297 54 854 233 115 84 chr13 32493158 32493335 -87251563 - LTR48B LTR ERV1 -380 215 45 623 138 21 0 chr13 32493335 32493429 -87251469 + MER2 DNA MER2_type 2 97 -248 1512 198 0 30 chr13 32493429 32493727 -87251171 + AluJo SINE Alu 1 289 -23 182 91 30 0 chr13 32493731 32493764 -87251134 + (TA)n Simple_repeat Simple_repeat 2 35 0 219 36 0 0 chr13 32493764 32493792 -87251106 + (CA)n Simple_repeat Simple_repeat 2 29 0 225 162 0 0 chr13 32493793 32493830 -87251068 - MER2 DNA MER2_type -226 119 83 185 154 26 0 chr13 32493836 32493875 -87251023 + (TA)n Simple_repeat Simple_repeat 1 40 0 357 24 0 0 chr13 32493876 32493918 -87250980 + (TG)n Simple_repeat Simple_repeat 2 43 0 1302 222 134 82 chr13 32493929 32494643 -87250255 + LTR1B LTR ERV1 41 983 -37 451 175 0 12 chr13 32494699 32494779 -87250119 + MER4A LTR ERV1 20 98 -566 1776 136 47 23 chr13 32494779 32495116 -87249782 + MER4A LTR ERV1 261 664 0 720 241 88 32 chr13 32495143 32495392 -87249506 + MER2 DNA MER2_type 83 345 0 492 171 0 23 chr13 32495393 32495487 -87249411 - MER34C LTR ERV1 -503 82 4 316 145 0 79 chr13 32495498 32495574 -87249324 - L1ME4a LINE L1 -54 6067 5998 457 280 66 19 chr13 32495675 32495932 -87248966 - L1ME4a LINE L1 -281 5840 5572 933 125 0 0 chr13 32495932 32496091 -87248807 - AluY SINE Alu 0 316 158 259 236 0 42 chr13 32496228 32496300 -87248598 + MLT1C LTR MaLR 399 467 0 2379 96 0 0 chr13 32496580 32496873 -87248025 + AluSg SINE Alu 1 293 -17 1781 247 95 11 chr13 32498598 32499125 -87245773 + MLT1G LTR MaLR 9 579 -11 736 296 40 12 chr13 32499292 32499539 -87245359 - MIR SINE MIR -7 255 2 1877 151 0 50 chr13 32500206 32500525 -87244373 + MER1B DNA MER1_type 37 339 0 1600 139 70 55 chr13 32500538 32500883 -87244015 + LOR1b LTR ERV1 32 381 -80 210 37 0 0 chr13 32502087 32502114 -87242784 + (TG)n Simple_repeat Simple_repeat 2 28 0 344 296 0 113 chr13 32502771 32502818 -87242080 - MIR SINE MIR -102 160 109 217 0 0 0 chr13 32502818 32502842 -87242056 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 2306 75 0 0 chr13 32502842 32503122 -87241776 - AluSc SINE Alu -29 280 1 344 296 0 113 chr13 32503122 32503232 -87241666 - MIR SINE MIR -151 111 20 206 330 91 0 chr13 32504715 32504803 -87240095 + L2 LINE L2 3134 3229 -43 295 307 88 7 chr13 32505491 32505628 -87239270 - MIR SINE MIR -51 211 64 738 91 20 0 chr13 32505950 32506049 -87238849 - AluSg/x SINE Alu -13 299 199 1205 167 99 111 chr13 32506062 32506386 -87238512 + MLT1B LTR MaLR 1 323 -67 2075 113 3 7 chr13 32506386 32506720 -87238178 - AluSx SINE Alu 0 333 1 1205 167 99 111 chr13 32506720 32506788 -87238110 + MLT1B LTR MaLR 323 390 0 187 149 21 21 chr13 32508041 32508088 -87236810 + (TATATG)n Simple_repeat Simple_repeat 1 47 0 231 103 0 0 chr13 32508132 32508171 -87236727 + (TA)n Simple_repeat Simple_repeat 1 39 0 326 338 70 25 chr13 32508937 32509094 -87235804 - L3b LINE CR1 -8 1575 1412 241 288 261 0 chr13 32509209 32509320 -87235578 + MIR3 SINE MIR 18 157 -51 353 268 89 32 chr13 32509324 32509447 -87235451 + MER5A DNA MER1_type 1 130 -59 * 364 296 9 26 chr13 32509351 32509466 -87235432 - MER5A DNA MER1_type -26 163 51 312 244 90 0 chr13 32511571 32511649 -87233249 + MIR SINE MIR 62 146 -116 1479 176 85 48 chr13 32511705 32512057 -87232841 + MLT1A1 LTR MaLR 1 365 0 457 306 49 61 chr13 32512133 32512460 -87232438 + Charlie7 DNA MER1_type 1 323 -2289 2193 170 62 22 chr13 32512500 32512964 -87231934 + MLT1D LTR MaLR 23 505 0 558 230 36 0 chr13 32512968 32513107 -87231791 + Charlie7 DNA MER1_type 328 471 -2141 34 24 0 0 chr13 32513215 32513256 -87231642 + AT_rich Low_complexity Low_complexity 1 41 0 1978 200 66 22 chr13 32513279 32513503 -87231395 - L1MD2 LINE L1 -1 6358 6145 1709 137 53 66 chr13 32513503 32513883 -87231015 - THE1C LTR MaLR 0 375 1 1978 200 66 22 chr13 32513883 32514157 -87230741 - L1MD2 LINE L1 -214 6145 5838 1381 266 42 54 chr13 32514159 32514663 -87230235 - MLT1E2 LTR MaLR -2 624 127 1483 176 0 46 chr13 32514746 32515075 -87229823 - L1MD2 LINE L1 -517 5842 5529 * 9808 183 32 21 chr13 32515063 32515218 -87229680 - L1 LINE L1 -1670 5895 5743 2326 74 7 7 chr13 32515218 32515515 -87229383 - AluY SINE Alu -14 297 1 9808 183 32 21 chr13 32515515 32517940 -87226958 - L1 LINE L1 -1822 5743 3280 197 291 18 0 chr13 32517940 32517995 -87226903 - MIR3 SINE MIR -42 166 111 2212 138 0 0 chr13 32518904 32519216 -87225682 + AluSx SINE Alu 1 312 0 245 268 28 14 chr13 32519218 32519289 -87225609 - MER5B DNA MER1_type -100 78 7 788 128 0 64 chr13 32519394 32519582 -87225316 + (GAA)n Simple_repeat Simple_repeat 1 176 0 200 324 171 0 chr13 32519892 32519997 -87224901 - L2 LINE L2 0 3272 3150 237 163 0 0 chr13 32520087 32520130 -87224768 - MLT1K LTR MaLR 0 588 546 2231 128 14 3 chr13 32522539 32522897 -87222001 + MER4B LTR ERV1 227 588 -22 1043 99 324 0 chr13 32522897 32523110 -87221788 + LTR12 LTR ERV1 1 282 -432 282 240 0 0 chr13 32523111 32523186 -87221712 + LTR30 LTR ERV1 550 624 -98 1126 95 57 0 chr13 32523186 32523378 -87221520 + LTR12 LTR ERV1 49 660 -54 2471 84 0 0 chr13 32523378 32523686 -87221212 - AluY SINE Alu -3 308 1 21 0 0 0 chr13 32524691 32524712 -87220186 + AT_rich Low_complexity Low_complexity 1 21 0 520 209 276 36 chr13 32525176 32525401 -87219497 + MER39 LTR ERV1 4 282 -425 * 1315 196 95 20 chr13 32525378 32525749 -87219149 + MER39 LTR ERV1 175 707 0 187 280 20 0 chr13 32525750 32525800 -87219098 - MIR SINE MIR -73 135 85 188 61 61 0 chr13 32526728 32526761 -87218137 + T-rich Low_complexity Low_complexity 2 36 0 280 237 145 89 chr13 32527671 32527975 -87216923 + L2 LINE L2 2317 2637 -677 26 0 0 0 chr13 32528014 32528040 -87216858 + AT_rich Low_complexity Low_complexity 1 26 0 315 267 111 39 chr13 32528156 32528336 -87216562 - MIR SINE MIR -13 249 57 227 181 15 98 chr13 32528362 32528495 -87216403 + (TTATA)n Simple_repeat Simple_repeat 3 124 0 213 252 18 18 chr13 32528548 32528659 -87216239 + (TATAA)n Simple_repeat Simple_repeat 5 115 0 208 372 0 0 chr13 32528998 32529084 -87215814 + MIR SINE MIR 162 247 -15 633 266 131 18 chr13 32529092 32529321 -87215577 + MIR SINE MIR 2 256 -6 269 366 66 22 chr13 32529483 32529666 -87215232 - MIR3 SINE MIR -9 199 9 234 431 36 6 chr13 32530169 32530336 -87214562 - L2 LINE L2 -2 3270 3099 332 276 265 0 chr13 32530367 32530552 -87214346 - MIR SINE MIR -3 259 26 210 341 62 31 chr13 32530612 32530741 -87214157 - L2 LINE L2 -186 3086 2954 714 270 75 107 chr13 32530906 32531280 -87213618 + L2 LINE L2 2910 3271 -1 2148 128 0 3 chr13 32531747 32532060 -87212838 + AluSx SINE Alu 1 312 0 316 304 175 21 chr13 32532563 32532757 -87212141 - MIR SINE MIR -20 242 19 245 312 174 7 chr13 32532996 32533134 -87211764 + MIR SINE MIR 96 256 -6 199 111 0 0 chr13 32533530 32533557 -87211341 - L2 LINE L2 -14 3258 3232 2271 90 3 0 chr13 32533604 32533914 -87210984 - AluSp SINE Alu -2 311 1 22 0 0 0 chr13 32533915 32533937 -87210961 + AT_rich Low_complexity Low_complexity 1 22 0 2105 203 60 6 chr13 32534702 32535181 -87209717 + MLT1D LTR MaLR 1 505 0 513 299 57 6 chr13 32535217 32535374 -87209524 + MIR3 SINE MIR 30 194 -14 197 83 28 0 chr13 32535599 32535635 -87209263 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 342 269 0 55 chr13 32537061 32537206 -87207692 - LTR67 LTR ERVL -7 550 414 2584 129 194 21 chr13 32537530 32538055 -87206843 - MER51A LTR ERV1 -18 616 1 302 338 22 35 chr13 32538559 32538790 -87206108 - ERVL LTR ERVL -186 5299 5072 286 315 159 26 chr13 32538941 32539281 -87205617 - ERVL LTR ERVL -764 4890 4506 341 281 21 10 chr13 32539294 32539390 -87205508 - ERVL LTR ERVL -3497 2267 2171 215 265 0 0 chr13 32539397 32539446 -87205452 + (TA)n Simple_repeat Simple_repeat 2 50 0 525 319 113 34 chr13 32539502 32540177 -87204721 - ERVL LTR ERVL -3675 2089 1362 2367 82 3 16 chr13 32540288 32540593 -87204305 - AluSp SINE Alu -12 301 1 200 216 20 0 chr13 32540740 32540791 -87204107 + (ATTG)n Simple_repeat Simple_repeat 3 54 0 313 0 0 0 chr13 32541536 32541573 -87203325 + MSTB LTR MaLR 18 54 -372 199 259 35 0 chr13 32541618 32541676 -87203222 + L2 LINE L2 2715 2774 -540 2172 181 19 14 chr13 32542026 32542446 -87202452 + MSTB LTR MaLR 1 422 -4 203 250 33 11 chr13 32543660 32543752 -87201146 + (TA)n Simple_repeat Simple_repeat 2 95 0 2182 105 0 53 chr13 32544696 32545019 -87199879 - AluSq SINE Alu -7 306 1 871 162 40 0 chr13 32545301 32545449 -87199449 + FRAM SINE Alu 1 153 -23 265 381 35 10 chr13 32545791 32545993 -87198905 + L3 LINE CR1 1113 1319 -258 1877 169 20 31 chr13 32546142 32546532 -87198366 - MLT1B LTR MaLR -4 386 1 246 316 53 13 chr13 32548284 32548360 -87196538 + L2 LINE L2 3231 3309 -4 2154 119 3 0 chr13 32549581 32549909 -87194989 - L1PA13 LINE L1 -5 6158 5830 3265 137 24 0 chr13 32549909 32550742 -87194156 + L1P4 LINE L1 4949 5795 -368 336 115 103 13 chr13 32550814 32550892 -87194006 - MER95 LTR ERV -4 427 343 403 208 21 10 chr13 32550992 32551088 -87193810 - MER95 LTR ERV -313 118 22 1519 291 149 29 chr13 32553833 32554265 -87190633 - Charlie8 DNA MER1_type -426 1991 1612 2068 167 44 39 chr13 32554265 32554696 -87190202 + Tigger2a DNA MER2_type 1 433 -1 1519 291 149 29 chr13 32554696 32555730 -87189168 - Charlie8 DNA MER1_type -805 1612 339 464 216 141 124 chr13 32556003 32556068 -87188830 + L2 LINE L2 2669 2731 -583 1896 148 23 3 chr13 32556068 32556372 -87188526 - AluSx SINE Alu -2 310 1 464 216 141 124 chr13 32556372 32556449 -87188449 + L2 LINE L2 2731 2805 -509 782 170 149 48 chr13 32556449 32556637 -87188261 - MER63A DNA MER1_type 0 210 4 464 216 141 124 chr13 32556637 32556784 -87188114 + L2 LINE L2 2805 2964 -350 255 125 0 0 chr13 32556875 32556915 -87187983 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 387 258 52 45 chr13 32556915 32557070 -87187828 + L2 LINE L2 3158 3313 0 815 297 139 43 chr13 32557740 32558393 -87186505 - L2 LINE L2 -907 2407 1692 267 222 0 16 chr13 32558448 32558511 -87186387 + L1ME LINE L1 45 106 -5964 * 12473 153 38 5 chr13 32558508 32558769 -87186129 + L1M1 LINE L1 12 263 -7302 2102 118 7 7 chr13 32558769 32559073 -87185825 + AluSx SINE Alu 1 304 -8 12473 153 38 5 chr13 32559073 32561552 -87183346 + L1M1 LINE L1 263 3538 -4027 685 295 53 18 chr13 32561564 32561849 -87183049 + L1ME LINE L1 110 404 -5666 381 267 78 0 chr13 32562268 32562384 -87182514 + MIR SINE MIR 121 245 -17 845 331 3 48 chr13 32563961 32564001 -87180897 + L1MA4 LINE L1 2 42 -5913 2103 131 7 0 chr13 32564001 32564299 -87180599 + AluSx SINE Alu 1 300 -12 845 331 3 48 chr13 32564299 32564614 -87180284 + L1MA4 LINE L1 42 341 -5614 14117 188 60 10 chr13 32565808 32566067 -87178831 + L1MA4 LINE L1 335 580 -5608 1586 215 3 3 chr13 32566067 32566360 -87178538 + AluJo SINE Alu 1 293 -19 14117 188 60 10 chr13 32566360 32571653 -87173245 + L1MA4 LINE L1 580 6181 -7 261 0 0 0 chr13 32572221 32572250 -87172648 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 928 153 64 15 chr13 32572836 32573039 -87171859 + L1M4 LINE L1 5000 5212 -934 268 336 27 7 chr13 32573700 32573846 -87171052 + L1MEc LINE L1 241 389 -6007 881 228 60 29 chr13 32573873 32574028 -87170870 - Tigger7 DNA MER2_type -265 74 79 1609 181 13 29 chr13 32574028 32574337 -87170561 - AluJo SINE Alu -8 304 1 881 228 60 29 chr13 32574337 32574396 -87170502 - Tigger7 DNA MER2_type -259 80 24 247 358 30 20 chr13 32574406 32574607 -87170291 + L1MEc LINE L1 498 700 -5696 1036 164 142 0 chr13 32574618 32574844 -87170054 - Tigger2 DNA MER2_type 0 2718 2461 248 128 0 64 chr13 32574880 32574927 -87169971 - Tigger2 DNA MER2_type -1974 744 701 748 137 65 0 chr13 32574927 32575048 -87169850 - Tigger2 DNA MER2_type -2246 472 344 1827 143 67 40 chr13 32575048 32575376 -87169522 - MER1B DNA MER1_type -2 337 1 1492 166 71 12 chr13 32575376 32575699 -87169199 - Tigger2 DNA MER2_type -2376 342 1 490 246 159 31 chr13 32575807 32576322 -87168576 + L1MEc LINE L1 802 1420 -4795 491 238 54 12 chr13 32576473 32576641 -87168257 + L1MEc LINE L1 1608 1782 -4614 688 249 61 30 chr13 32577357 32577654 -87167244 + L1ME2 LINE L1 631 936 -5348 649 259 142 12 chr13 32577667 32577991 -87166907 + L1ME2 LINE L1 1367 1833 -4549 619 187 53 120 chr13 32577998 32578281 -87166617 + L1ME2 LINE L1 2532 2795 -3587 819 216 58 32 chr13 32578319 32578661 -87166237 + L1ME2 LINE L1 3063 3413 -2969 1810 206 126 22 chr13 32578666 32579247 -87165651 + L1ME2 LINE L1 5748 6388 -12 348 296 6 51 chr13 32580467 32580643 -87164255 + L1MC4a LINE L1 5668 5816 -305 265 286 158 5 chr13 32580808 32581011 -87163887 + L2 LINE L2 3077 3310 -3 432 55 0 0 chr13 32582006 32582061 -87162837 + (TA)n Simple_repeat Simple_repeat 2 56 0 235 244 126 76 chr13 32582277 32582396 -87162502 - MIR SINE MIR -118 144 20 213 298 164 10 chr13 32582482 32582586 -87162312 - MIR SINE MIR -122 140 21 246 331 86 63 chr13 32582866 32583041 -87161857 + MIR SINE MIR 13 191 -71 25 0 0 0 chr13 32584321 32584346 -87160552 + AT_rich Low_complexity Low_complexity 1 25 0 2081 109 3 10 chr13 32584764 32585058 -87159840 + AluSx SINE Alu 1 292 -20 2326 93 0 7 chr13 32585060 32585370 -87159528 + AluY SINE Alu 1 308 -3 2181 99 0 0 chr13 32586729 32587021 -87157877 + AluY SINE Alu 1 292 -19 287 280 59 17 chr13 32587947 32588065 -87156833 - L1ME4a LINE L1 -36 6085 5963 953 178 0 41 chr13 32588402 32588571 -87156327 + AluJb SINE Alu 134 295 -17 369 324 47 47 chr13 32588571 32588824 -87156074 - L1ME4a LINE L1 -535 5586 5347 2533 51 0 0 chr13 32589378 32589674 -87155224 - AluY SINE Alu -15 296 1 21 57 0 0 chr13 32589716 32589751 -87155147 + AT_rich Low_complexity Low_complexity 1 35 0 1962 104 82 25 chr13 32589835 32590190 -87154708 + THE1C LTR MaLR 1 375 0 707 190 38 22 chr13 32590549 32590733 -87154165 - MER53 DNA DNA -2 187 1 1704 181 3 13 chr13 32590771 32591069 -87153829 + AluJo SINE Alu 1 295 -17 198 0 0 0 chr13 32591976 32591998 -87152900 + (CAAG)n Simple_repeat Simple_repeat 1 22 0 3953 173 55 21 chr13 32591999 32592142 -87152756 - MER21B LTR ERV1 -114 749 612 2362 87 7 16 chr13 32592142 32592452 -87152446 + AluSx SINE Alu 1 307 -5 3953 173 55 21 chr13 32592452 32593032 -87151866 - MER21B LTR ERV1 -251 612 1 180 349 35 23 chr13 32593135 32593221 -87151677 + MIR SINE MIR 94 180 -82 3033 132 20 4 chr13 32593278 32593772 -87151126 + L1MB3 LINE L1 5681 6182 -1 473 292 9 0 chr13 32594224 32594337 -87150561 + L2 LINE L2 3155 3268 -4 2381 77 7 3 chr13 32594369 32594679 -87150219 - AluY SINE Alu 0 311 1 249 271 0 29 chr13 32595320 32595390 -87149508 + CT-rich Low_complexity Low_complexity 4 71 0 396 255 102 51 chr13 32595390 32595645 -87149253 - L2 LINE L2 -1 3312 3045 310 325 56 25 chr13 32595917 32596077 -87148821 - L2 LINE L2 -4 3309 3145 2366 146 63 5 chr13 32597031 32597178 -87147720 - L1MB7 LINE L1 -20 6164 6018 4245 217 39 10 chr13 32597178 32598741 -87146157 - L1MC4 LINE L1 -743 5403 4390 393 260 29 0 chr13 32598852 32598956 -87145942 - MIR SINE MIR -65 197 91 933 232 65 90 chr13 32599516 32600012 -87144886 - MLT1H1 LTR MaLR -1 554 19 207 265 0 0 chr13 32600034 32600083 -87144815 - L2 LINE L2 -38 3234 3186 499 264 16 0 chr13 32600138 32600263 -87144635 + MER94 DNA DNA 8 134 0 1555 186 16 70 chr13 32600617 32601003 -87143895 - MLT1A1 LTR MaLR 0 365 1 2588 39 0 0 chr13 32601177 32601484 -87143414 + AluYa5 SINE Alu 1 307 -4 1438 126 5 5 chr13 32602378 32602585 -87142313 - AluSq SINE Alu -106 207 1 196 274 145 48 chr13 32604996 32605120 -87139778 + MIR SINE MIR 124 259 -3 192 214 71 0 chr13 32605277 32605319 -87139579 - L3 LINE CR1 -3 1574 1530 209 339 220 0 chr13 32605328 32605446 -87139452 - L2 LINE L2 -20 3252 3109 23 0 0 0 chr13 32605998 32606021 -87138877 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 32606093 32606114 -87138784 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 32607042 32607064 -87137834 + AT_rich Low_complexity Low_complexity 1 22 0 188 282 64 103 chr13 32607200 32607356 -87137542 - MIR SINE MIR -74 188 39 22 0 0 0 chr13 32607482 32607504 -87137394 + AT_rich Low_complexity Low_complexity 1 22 0 1764 139 90 13 chr13 32607901 32608211 -87136687 + MER1B DNA MER1_type 1 334 -3 644 150 35 9 chr13 32609450 32609563 -87135335 + U5 snRNA snRNA 1 116 0 1541 151 34 45 chr13 32610263 32610555 -87134343 + AluJo SINE Alu 1 289 -23 422 207 0 0 chr13 32610708 32610790 -87134108 + AluJ/FLAM SINE Alu 6 87 -225 993 165 6 0 chr13 32610927 32611085 -87133813 - FRAM SINE Alu -5 171 13 24 32 0 0 chr13 32611549 32611580 -87133318 + AT_rich Low_complexity Low_complexity 1 31 0 868 229 0 0 chr13 32611791 32611957 -87132941 - FRAM SINE Alu -10 166 1 552 327 62 2 chr13 32611963 32612412 -87132486 + L1ME LINE L1 3829 4304 -1842 589 249 30 28 chr13 32612623 32612843 -87132055 + L1ME LINE L1 5437 5651 -470 363 229 57 41 chr13 32614242 32614364 -87130534 + MIR SINE MIR 106 229 -33 22 0 0 0 chr13 32615557 32615579 -87129319 + AT_rich Low_complexity Low_complexity 1 22 0 228 281 175 72 chr13 32615586 32616158 -87128740 - L1MC/D LINE L1 -1905 5903 5273 277 312 109 28 chr13 32616363 32616835 -87128063 - L1MC/D LINE L1 -1134 5012 4501 225 329 53 0 chr13 32617523 32617599 -87127299 + MIR SINE MIR 36 115 -93 189 0 0 0 chr13 32618165 32618186 -87126712 + (TA)n Simple_repeat Simple_repeat 1 21 0 210 255 38 104 chr13 32618283 32618389 -87126509 - MER5A DNA MER1_type -7 182 84 821 273 97 76 chr13 32618398 32618874 -87126024 - LTR16C LTR ERVL -2 489 4 2543 52 0 3 chr13 32619897 32620205 -87124693 + AluSq SINE Alu 1 307 -6 703 277 113 18 chr13 32620325 32620725 -87124173 + L2 LINE L2 2701 3143 -170 230 54 0 27 chr13 32621244 32621281 -87123617 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 209 328 17 0 chr13 32621281 32621339 -87123559 - L2 LINE L2 -13 3259 3201 676 271 24 19 chr13 32621954 32622161 -87122737 + L2 LINE L2 2898 3105 -208 344 327 56 23 chr13 32622171 32622385 -87122513 - L2 LINE L2 -2545 769 549 233 67 0 0 chr13 32622480 32622510 -87122388 + MER53 DNA DNA 29 58 -131 1380 128 0 5 chr13 32622559 32622762 -87122136 - AluSx SINE Alu -109 203 2 1270 201 97 3 chr13 32622764 32623072 -87121826 - L1M4 LINE L1 -553 5621 5285 1195 264 106 33 chr13 32623075 32623650 -87121248 - L1M4 LINE L1 -893 5253 4637 1208 250 125 35 chr13 32623802 32624377 -87120521 - L1M4 LINE L1 -893 5253 4627 1044 259 68 67 chr13 32624894 32625158 -87119740 + HAL1 LINE L1 1793 2055 -452 1079 214 110 31 chr13 32625158 32625475 -87119423 + MER2 DNA MER2_type 2 343 -1 1044 259 68 67 chr13 32625475 32625576 -87119322 + HAL1 LINE L1 2055 2154 -353 1749 115 76 49 chr13 32625576 32625864 -87119034 + AluSg SINE Alu 1 296 -14 1044 259 68 67 chr13 32625864 32626068 -87118830 + HAL1 LINE L1 2154 2364 -143 2293 81 3 0 chr13 32626127 32626444 -87118454 + AluSx SINE Alu 1 318 0 192 333 74 43 chr13 32626678 32626936 -87117962 - L2 LINE L2 -187 3085 2820 342 299 35 40 chr13 32627118 32627292 -87117606 + MIR3 SINE MIR 36 208 0 2221 118 3 7 chr13 32628337 32628642 -87116256 - AluSx SINE Alu -7 305 2 230 305 55 55 chr13 32629722 32629850 -87115048 - L2 LINE L2 -222 3050 2923 186 237 0 0 chr13 32630017 32630055 -87114843 + L2 LINE L2 3227 3264 -8 246 298 81 24 chr13 32630112 32630236 -87114662 - MIR SINE MIR -130 132 2 420 220 198 34 chr13 32630278 32630455 -87114443 - MIR SINE MIR -44 218 13 319 380 7 7 chr13 32630817 32630954 -87113944 - MER5B DNA MER1_type -41 137 1 220 146 24 0 chr13 32631076 32631117 -87113781 + (TAA)n Simple_repeat Simple_repeat 2 43 0 379 255 21 0 chr13 32631531 32631625 -87113273 - MIR SINE MIR -72 190 95 2043 135 6 6 chr13 32633863 32634175 -87110723 + AluSq SINE Alu 1 312 -1 260 322 22 61 chr13 32634177 32634357 -87110541 - MLT1J1 LTR MaLR -33 413 241 793 236 45 68 chr13 32634366 32634864 -87110034 + MER39 LTR ERV1 5 787 0 584 274 85 40 chr13 32634864 32635087 -87109811 - MLT1J2 LTR MaLR -217 233 1 2041 125 0 0 chr13 32635201 32635520 -87109378 - AluSx SINE Alu 0 323 5 385 309 66 22 chr13 32635843 32635979 -87108919 - MIR SINE MIR -120 142 1 221 253 110 117 chr13 32637077 32637231 -87107667 - L2 LINE L2 -26 3246 3094 435 207 333 0 chr13 32637301 32637436 -87107462 + MER5A DNA MER1_type 9 188 -1 487 205 134 9 chr13 32638565 32638677 -87106221 - FLAM_A SINE Alu -7 126 1 1484 195 34 84 chr13 32639136 32639612 -87105286 - MLT1C LTR MaLR -15 452 1 1681 207 0 0 chr13 32640353 32640672 -87104226 + AluJb SINE Alu 2 320 0 2177 123 0 3 chr13 32640696 32641005 -87103893 + AluSp SINE Alu 1 308 -5 21 36 0 0 chr13 32641061 32641089 -87103809 + AT_rich Low_complexity Low_complexity 1 28 0 503 284 89 48 chr13 32641099 32641391 -87103507 - L2 LINE L2 -4 3309 3006 213 47 70 0 chr13 32642106 32642149 -87102749 + (TTG)n Simple_repeat Simple_repeat 3 48 0 2131 90 4 7 chr13 32642149 32642427 -87102471 - AluSx SINE Alu -35 277 1 2409 226 108 40 chr13 32642454 32643389 -87101509 - L1ME2 LINE L1 -6 6158 5163 1174 261 88 15 chr13 32643580 32643909 -87100989 - MLT1E3 LTR MaLR -2 622 270 1427 186 82 48 chr13 32644546 32644923 -87099975 - MLT1B LTR MaLR 0 390 1 322 231 19 58 chr13 32644967 32645071 -87099827 + MLT1C LTR MaLR 2 101 -366 1622 133 61 33 chr13 32645177 32645380 -87099518 - L1MB1 LINE L1 0 6168 5951 2325 163 42 7 chr13 32645380 32645790 -87099108 - MSTB LTR MaLR 0 426 3 1622 133 61 33 chr13 32645790 32645916 -87098982 - L1MB1 LINE L1 -217 5951 5830 956 214 6 0 chr13 32645924 32646106 -87098792 + MLT2B1 LTR ERVL 21 203 -317 3941 245 93 16 chr13 32646109 32648411 -87096487 - L1 LINE L1 -3201 3181 802 21 0 0 0 chr13 32648548 32648569 -87096329 + AT_rich Low_complexity Low_complexity 1 21 0 4817 100 33 12 chr13 32648569 32649298 -87095600 - L1PB2 LINE L1 -2 6149 5406 270 295 179 27 chr13 32650704 32650816 -87094082 + L2 LINE L2 3143 3271 -1 506 222 131 17 chr13 32651349 32651525 -87093373 - L1MB8 LINE L1 0 6178 5983 711 153 30 0 chr13 32651531 32651662 -87093236 + MER53 DNA DNA 55 189 0 2310 94 10 0 chr13 32652352 32652661 -87092237 - AluSx SINE Alu 0 312 1 205 296 19 0 chr13 32652859 32652913 -87091985 - L2 LINE L2 -67 3205 3151 1172 208 32 7 chr13 32653274 32653558 -87091340 - L1ME2 LINE L1 -1287 4859 4569 377 20 20 0 chr13 32653634 32653684 -87091214 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr13 32654208 32654229 -87090669 + AT_rich Low_complexity Low_complexity 1 21 0 3127 173 49 2 chr13 32654282 32654872 -87090026 + L1MB2 LINE L1 5538 6155 -16 1651 158 40 4 chr13 32655757 32656029 -87088869 + AluSx SINE Alu 1 322 0 274 75 0 0 chr13 32656029 32656069 -87088829 + (TAAA)n Simple_repeat Simple_repeat 2 176 0 2446 136 32 17 chr13 32656584 32656989 -87087909 + LTR57 LTR ERVL 1 411 0 376 296 24 53 chr13 32657537 32657706 -87087192 - L2 LINE L2 -931 2383 2220 242 325 69 96 chr13 32657770 32657831 -87087067 - L2 LINE L2 -2777 537 476 2122 134 0 7 chr13 32657831 32658137 -87086761 + AluSx SINE Alu 1 304 -8 242 325 69 96 chr13 32658137 32658318 -87086580 - L2 LINE L2 -2838 476 304 2226 174 62 2 chr13 32658318 32658720 -87086178 + MSTB LTR MaLR 1 426 0 242 325 69 96 chr13 32658720 32658811 -87086087 - L2 LINE L2 -3010 304 212 258 282 71 12 chr13 32659244 32659329 -87085569 - L2 LINE L2 -15 3298 3209 1822 172 53 3 chr13 32659611 32659930 -87084968 - MER7A DNA MER2_type -13 333 1 781 216 33 19 chr13 32659930 32660179 -87084719 - L1MA9 LINE L1 -33 6266 5997 2117 177 60 24 chr13 32660186 32660637 -87084261 - MLT1C LTR MaLR 0 467 1 373 289 83 62 chr13 32663643 32663979 -87080919 + L1ME LINE L1 4477 4819 -1327 249 284 110 55 chr13 32663981 32664090 -87080808 + L2 LINE L2 3198 3312 -1 490 196 209 13 chr13 32664679 32664837 -87080061 + MER5A DNA MER1_type 1 189 0 2095 168 43 33 chr13 32665454 32666000 -87078898 + MLT2A2 LTR ERVL 1 554 0 318 329 43 0 chr13 32666163 32666324 -87078574 + L1ME LINE L1 5569 5736 -385 696 266 84 21 chr13 32667796 32668033 -87076865 + MIR SINE MIR 11 262 0 1431 220 36 51 chr13 32668261 32668729 -87076169 + MER65B LTR ERV1 1 461 -70 23 78 0 0 chr13 32668905 32668956 -87075942 + AT_rich Low_complexity Low_complexity 1 51 0 241 378 20 26 chr13 32669378 32669529 -87075369 + GA-rich Low_complexity Low_complexity 1 150 0 2279 30 0 0 chr13 32669534 32669803 -87075095 - L1PA3 LINE L1 -142 6013 5745 320 130 78 26 chr13 32669803 32669880 -87075018 + MER65B LTR ERV1 440 520 -11 183 80 0 0 chr13 32670048 32670073 -87074825 + (TG)n Simple_repeat Simple_repeat 2 26 0 227 125 50 0 chr13 32670087 32670127 -87074771 + L1MA9 LINE L1 6196 6237 -75 219 116 0 47 chr13 32670128 32670171 -87074727 + (TA)n Simple_repeat Simple_repeat 1 41 0 526 134 42 33 chr13 32670177 32670425 -87074473 + (TATG)n Simple_repeat Simple_repeat 1 250 0 535 122 39 39 chr13 32670431 32670611 -87074287 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 264 174 0 76 chr13 32670611 32670703 -87074195 + (TA)n Simple_repeat Simple_repeat 1 85 0 358 172 115 0 chr13 32670704 32670791 -87074107 - L1MA9 LINE L1 -40 6272 6176 1114 158 48 31 chr13 32670791 32671019 -87073879 - L1MA9 LINE L1 -101 6211 5980 314 203 20 27 chr13 32671019 32671167 -87073731 + (TA)n Simple_repeat Simple_repeat 2 148 0 995 252 9 0 chr13 32671200 32671410 -87073488 - MER58A DNA MER1_type -9 215 4 655 267 85 21 chr13 32672798 32673043 -87071855 - MIR SINE MIR -13 249 3 661 193 62 0 chr13 32673424 32673569 -87071329 + L1MB7 LINE L1 6031 6184 0 436 322 87 51 chr13 32674316 32674651 -87070247 + L2 LINE L2 2925 3271 -1 371 324 35 17 chr13 32675625 32675798 -87069100 - MIR SINE MIR -51 211 36 438 285 62 8 chr13 32675960 32676090 -87068808 + MIR3 SINE MIR 3 139 -69 358 234 11 43 chr13 32677300 32677484 -87067414 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1937 143 3 3 chr13 32678040 32678326 -87066572 + AluSx SINE Alu 1 286 -26 22 56 0 0 chr13 32678326 32678362 -87066536 + AT_rich Low_complexity Low_complexity 1 36 0 457 282 49 45 chr13 32679448 32679693 -87065205 - L1ME LINE L1 -368 5753 5508 653 274 30 79 chr13 32680381 32680647 -87064251 - MIR SINE MIR 0 262 10 251 324 140 59 chr13 32681012 32681875 -87063023 + L2 LINE L2 2296 3221 -51 556 79 13 0 chr13 32682063 32682139 -87062759 + MADE1 DNA Mariner 1 77 -3 2697 151 15 30 chr13 32682221 32682684 -87062214 + MSTB2 LTR MaLR 1 456 -1 350 204 10 61 chr13 32682887 32682985 -87061913 + MIR3 SINE MIR 64 156 -52 348 313 36 62 chr13 32683169 32683188 -87061710 + L2 LINE L2 2892 2910 -362 2370 110 126 3 chr13 32683188 32683569 -87061329 + MSTA LTR MaLR 1 428 0 348 313 36 62 chr13 32683569 32683744 -87061154 + L2 LINE L2 2910 3081 -191 465 281 252 5 chr13 32683816 32684026 -87060872 - MIR SINE MIR 0 262 1 192 353 47 12 chr13 32684044 32684129 -87060769 + L2 LINE L2 3184 3271 -1 236 311 11 56 chr13 32684336 32684426 -87060472 + L2 LINE L2 3184 3269 -3 435 317 0 22 chr13 32684656 32684839 -87060059 + GA-rich Low_complexity Low_complexity 1 179 0 203 258 30 30 chr13 32684985 32685051 -87059847 + MIR3 SINE MIR 137 202 -6 1282 236 106 64 chr13 32685155 32685609 -87059289 + MLT2B1 LTR ERVL 1 479 -41 378 0 0 0 chr13 32685609 32685651 -87059247 + (TG)n Simple_repeat Simple_repeat 2 43 0 1282 236 106 64 chr13 32685651 32685695 -87059203 + MLT2B1 LTR ERVL 479 520 0 1255 233 34 15 chr13 32687143 32687405 -87057493 + AluJb SINE Alu 9 275 -37 180 256 0 0 chr13 32688657 32688700 -87056198 - MIR SINE MIR -3 259 217 341 259 79 36 chr13 32688845 32688984 -87055914 - HsTC2 DNA Tc2 -104 1794 1650 * 405 174 209 0 chr13 32688983 32689069 -87055829 - HsTC2 DNA Tc2 -1764 134 31 388 179 214 0 chr13 32689156 32689240 -87055658 - HsTC2 DNA Tc2 -1766 132 31 300 356 83 21 chr13 32689584 32689921 -87054977 - L2 LINE L2 -404 2910 2553 410 258 43 0 chr13 32690134 32690227 -87054671 - L2 LINE L2 -2 3270 3174 1618 190 102 8 chr13 32690785 32691179 -87053719 - MER63 DNA MER1_type -1 1060 630 634 355 44 19 chr13 32691185 32691329 -87053569 - L2 LINE L2 -436 2878 2739 1492 100 45 0 chr13 32691329 32691549 -87053349 - MER30 DNA MER1_type 0 230 1 634 355 44 19 chr13 32691549 32691765 -87053133 - L2 LINE L2 -575 2739 2509 15123 196 18 29 chr13 32692536 32696359 -87048539 - L1MA4 LINE L1 -6 7713 3850 471 87 0 0 chr13 32696359 32696428 -87048470 - L1MA3 LINE L1 -1 6304 6236 15123 196 18 29 chr13 32696428 32697619 -87047279 - L1MA4 LINE L1 -3869 3850 2758 1980 150 40 0 chr13 32697619 32697919 -87046979 - AluSx SINE Alu 0 312 1 15123 196 18 29 chr13 32697919 32698095 -87046803 - L1MA4 LINE L1 -4961 2758 2582 186 43 0 0 chr13 32698171 32698194 -87046704 + (TA)n Simple_repeat Simple_repeat 2 24 0 5474 148 26 18 chr13 32698194 32699639 -87045259 - L1PB3 LINE L1 -1 6153 4706 1561 307 65 18 chr13 32699647 32700353 -87044545 - L1MA4 LINE L1 -6122 1444 706 5274 235 85 12 chr13 32700385 32701638 -87043260 - L1M1 LINE L1 -4065 1263 9 205 362 26 26 chr13 32702304 32702456 -87042442 - L3b LINE CR1 -328 1255 1104 274 393 124 5 chr13 32702703 32702904 -87041994 - L3 LINE CR1 -1132 445 221 556 256 25 103 chr13 32703464 32703706 -87041192 + MIR SINE MIR 26 248 -14 231 360 0 11 chr13 32704287 32704376 -87040522 + L2 LINE L2 3196 3283 -30 540 184 0 7 chr13 32704376 32704484 -87040414 - L1MA6 LINE L1 -295 5871 5770 2248 162 14 7 chr13 32704484 32704898 -87040000 + L1MA6 LINE L1 5879 6295 -5 21 0 0 0 chr13 32704905 32704926 -87039972 + AT_rich Low_complexity Low_complexity 1 21 0 2361 84 3 0 chr13 32705278 32705574 -87039324 + AluY SINE Alu 1 297 -14 21 71 0 0 chr13 32705869 32705911 -87038987 + AT_rich Low_complexity Low_complexity 1 42 0 249 276 0 0 chr13 32705950 32706008 -87038890 - L2 LINE L2 -223 3049 2992 212 254 141 42 chr13 32706025 32706096 -87038802 + MER91C DNA MER1_type 31 108 -32 7493 21 4 0 chr13 32706132 32707685 -87037213 + L1PA3 LINE L1 4593 6152 -3 2012 121 37 0 chr13 32707757 32708055 -87036843 - AluY SINE Alu 0 311 3 259 302 52 51 chr13 32708212 32708494 -87036404 - MLT1J LTR MaLR -161 454 110 893 186 6 0 chr13 32708894 32709050 -87035848 + L1PB4 LINE L1 5982 6138 -18 1328 110 24 5 chr13 32710458 32710667 -87034231 - L1PA13 LINE L1 -2 6161 5949 1060 210 134 7 chr13 32710670 32710869 -87034029 - L1MD2 LINE L1 -1 6358 6109 219 88 0 0 chr13 32710869 32710903 -87033995 + (TG)n Simple_repeat Simple_repeat 2 35 0 1060 210 134 7 chr13 32710903 32710993 -87033905 - L1MD2 LINE L1 -250 6109 6032 1306 243 73 18 chr13 32711251 32711687 -87033211 + L1MD2 LINE L1 5615 6074 -285 1374 202 31 39 chr13 32711688 32712044 -87032854 - MLT1A1 LTR MaLR -12 353 1 313 238 8 41 chr13 32712044 32712166 -87032732 + L1MD2 LINE L1 6068 6185 -174 231 269 0 39 chr13 32712361 32712439 -87032459 - MIR SINE MIR -180 82 8 293 258 113 24 chr13 32712882 32713006 -87031892 + L2 LINE L2 3138 3272 0 1972 131 34 0 chr13 32713257 32713548 -87031350 - AluSg SINE Alu -9 301 1 1002 196 0 5 chr13 32713670 32713874 -87031024 - MER3 DNA MER1_type -1 208 6 1239 206 51 71 chr13 32714137 32714530 -87030368 + MLT1D LTR MaLR 1 385 -120 284 260 34 2 chr13 32714650 32714779 -87030119 - L1M LINE L1 -749 5413 5281 274 253 0 0 chr13 32714802 32714885 -87030013 - L1M4 LINE L1 -933 5213 5131 1236 260 40 46 chr13 32714921 32715497 -87029401 + MER21B LTR ERV1 162 784 -79 770 304 93 27 chr13 32715510 32716207 -87028691 - L1MEc LINE L1 -2790 3636 2894 366 317 59 69 chr13 32716234 32716540 -87028358 - L1MEc LINE L1 -4237 2370 2068 1923 189 21 3 chr13 32716578 32716979 -87027919 + MER61C LTR ERV1 13 404 -30 598 308 59 17 chr13 32717014 32717491 -87027407 - L1MEc LINE L1 -4634 1973 1477 357 266 60 82 chr13 32717685 32717869 -87027029 - L1MEc LINE L1 -5433 993 814 25 0 0 0 chr13 32717939 32717964 -87026934 + AT_rich Low_complexity Low_complexity 1 25 0 940 139 30 0 chr13 32717964 32718130 -87026768 - L1MA3 LINE L1 0 6305 6135 423 238 98 21 chr13 32718137 32718330 -87026568 - Charlie7 DNA MER1_type -1945 667 460 308 289 62 0 chr13 32718866 32718963 -87025935 - MIR SINE MIR -43 219 117 863 251 37 8 chr13 32718964 32719109 -87025789 - MLT1E1 LTR MaLR 0 654 498 893 167 6 0 chr13 32719109 32719277 -87025621 + L1MA5 LINE L1 6132 6300 0 863 251 37 8 chr13 32719277 32719374 -87025524 - MLT1E1 LTR MaLR -156 498 405 316 177 33 73 chr13 32719406 32719566 -87025332 - MLT1E1 LTR MaLR -433 221 51 199 304 33 22 chr13 32720942 32721034 -87023864 - MIR SINE MIR -45 217 125 208 358 127 6 chr13 32721500 32721665 -87023233 + L2 LINE L2 2434 2618 -696 2709 210 81 15 chr13 32722003 32722748 -87022150 - Charlie1a DNA MER1_type -1306 1455 760 1965 135 55 22 chr13 32722748 32723111 -87021787 + THE1C LTR MaLR 1 375 0 9947 121 30 38 chr13 32723111 32724703 -87020195 + THE1C-int LTR MaLR 1 1580 0 1720 130 109 29 chr13 32724703 32725050 -87019848 + THE1C LTR MaLR 1 375 0 2709 210 81 15 chr13 32725050 32725265 -87019633 - Charlie1a DNA MER1_type -2000 761 368 1371 219 82 30 chr13 32725265 32725666 -87019232 + MLT2B1 LTR ERVL 2 423 -97 269 87 0 22 chr13 32725666 32725712 -87019186 + (TC)n Simple_repeat Simple_repeat 2 46 0 306 0 0 0 chr13 32725712 32725746 -87019152 + (CA)n Simple_repeat Simple_repeat 2 35 0 1484 212 45 17 chr13 32725784 32726143 -87018755 - Charlie1a DNA MER1_type -1082 373 5 397 257 59 0 chr13 32726258 32726394 -87018504 + MLT1K LTR MaLR 379 522 -66 200 35 35 0 chr13 32726394 32726423 -87018475 + (TC)n Simple_repeat Simple_repeat 2 31 0 216 0 0 0 chr13 32726679 32726703 -87018195 + (T)n Simple_repeat Simple_repeat 1 24 0 2172 101 3 3 chr13 32726873 32727171 -87017727 - AluY SINE Alu -13 298 1 542 315 64 5 chr13 32727406 32727625 -87017273 - MIR SINE MIR 0 262 31 221 277 12 48 chr13 32727678 32727761 -87017137 - L2 LINE L2 -4 3309 3230 402 311 115 43 chr13 32728318 32728623 -87016275 - L3 LINE CR1 -21 1556 1230 180 0 0 0 chr13 32728964 32728984 -87015914 + (A)n Simple_repeat Simple_repeat 1 20 0 1784 174 19 25 chr13 32730170 32730537 -87014361 - MLT1A1 LTR MaLR 0 365 1 219 233 62 123 chr13 32732297 32732443 -87012455 + MIR SINE MIR 56 192 -70 204 70 70 0 chr13 32732629 32732672 -87012226 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 713 313 37 67 chr13 32733511 32733946 -87010952 - L2 LINE L2 -2 3311 2890 307 319 72 30 chr13 32734859 32735025 -87009873 + L2 LINE L2 2695 2867 -447 2515 163 12 0 chr13 32735420 32735843 -87009055 - MSTA LTR MaLR 0 428 1 192 338 44 0 chr13 32735913 32735981 -87008917 + MIR SINE MIR 38 108 -100 204 348 70 81 chr13 32736523 32736615 -87008283 + L2 LINE L2 2807 2898 -374 860 149 20 51 chr13 32736615 32736810 -87008088 - MER53 DNA DNA 0 189 1 204 348 70 81 chr13 32736810 32737186 -87007712 + L2 LINE L2 2898 3270 -2 304 307 102 0 chr13 32738118 32738245 -87006653 + L1ME4a LINE L1 5573 5712 -409 280 273 13 0 chr13 32738259 32738336 -87006562 + L1ME4a LINE L1 5788 5865 -256 346 281 51 39 chr13 32738639 32738817 -87006081 + L1ME4a LINE L1 5942 6121 0 918 253 89 50 chr13 32740358 32740797 -87004101 + MLT1C LTR MaLR 6 461 -6 355 202 167 39 chr13 32740797 32740914 -87003984 + MIR SINE MIR 18 161 -93 1290 157 197 14 chr13 32740914 32741208 -87003690 + MER7A DNA MER2_type 1 346 0 355 202 167 39 chr13 32741208 32741245 -87003653 + MIR SINE MIR 161 192 -62 205 326 0 0 chr13 32741883 32741932 -87002966 + L2 LINE L2 3008 3056 -257 1986 138 3 22 chr13 32742514 32742832 -87002066 + AluSx SINE Alu 1 312 0 2420 96 0 0 chr13 32743123 32743425 -87001473 - AluSg SINE Alu -8 302 1 235 125 0 0 chr13 32743442 32743482 -87001416 - MER103 DNA DNA -119 47 8 2182 104 7 0 chr13 32743777 32744065 -87000833 - AluSx SINE Alu -22 290 1 289 331 50 50 chr13 32745275 32745414 -86999484 + MIR3 SINE MIR 4 142 -66 4175 96 12 5 chr13 32745556 32746152 -86998746 - L1PA11 LINE L1 0 6174 5575 951 297 88 23 chr13 32746181 32746622 -86998276 - LTR16C LTR ERVL 0 491 22 21 0 0 0 chr13 32746682 32746703 -86998195 + AT_rich Low_complexity Low_complexity 1 21 0 1004 202 0 5 chr13 32747100 32747288 -86997610 - MER58A DNA MER1_type 0 224 38 325 314 65 20 chr13 32747298 32747451 -86997447 - L1ME LINE L1 -353 5809 5650 1911 141 0 14 chr13 32747471 32747755 -86997143 + AluSx SINE Alu 1 280 -32 363 254 97 92 chr13 32747990 32748218 -86996680 - L1MEd LINE L1 -5871 248 20 231 329 57 0 chr13 32748369 32748439 -86996459 + L2 LINE L2 3150 3223 -49 193 276 103 60 chr13 32748882 32748998 -86995900 - L2 LINE L2 -262 3051 2931 335 58 58 0 chr13 32749233 32749285 -86995613 + CT-rich Low_complexity Low_complexity 4 58 0 1807 119 8 0 chr13 32749285 32749537 -86995361 - AluSx SINE Alu -3 309 56 4796 194 36 7 chr13 32750345 32750499 -86994399 + L1MC3 LINE L1 5311 5459 -2326 192 77 0 0 chr13 32750499 32750525 -86994373 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4796 194 36 7 chr13 32750525 32751452 -86993446 + L1MC3 LINE L1 5459 6424 -1361 3713 191 133 42 chr13 32751469 32751876 -86993022 + L1MC3 LINE L1 6614 6982 -803 2752 118 80 4 chr13 32751876 32752350 -86992548 + L1MA4 LINE L1 5785 6294 -6 3713 191 133 42 chr13 32752350 32753016 -86991882 + L1MC3 LINE L1 6982 7785 0 24 32 0 0 chr13 32753146 32753177 -86991721 + AT_rich Low_complexity Low_complexity 1 31 0 28 95 0 0 chr13 32753533 32753617 -86991281 + AT_rich Low_complexity Low_complexity 1 84 0 576 338 49 21 chr13 32754407 32754735 -86990163 + L2 LINE L2 2020 2356 -958 216 284 101 81 chr13 32754873 32755021 -86989877 + L2 LINE L2 2564 2714 -600 1085 120 0 21 chr13 32755164 32755355 -86989543 - L1MA5A LINE L1 -1 6296 6110 392 298 50 8 chr13 32755496 32755617 -86989281 + L2 LINE L2 3145 3270 -2 270 81 0 0 chr13 32756499 32756536 -86988362 + (TA)n Simple_repeat Simple_repeat 2 38 0 233 258 43 0 chr13 32756548 32756641 -86988257 + L1MC4 LINE L1 6622 6718 -1324 198 71 0 0 chr13 32756644 32756672 -86988226 + (TA)n Simple_repeat Simple_repeat 1 28 0 424 254 30 18 chr13 32756683 32756848 -86988050 - L1M4 LINE L1 -957 5189 5023 1339 80 6 6 chr13 32756851 32757026 -86987872 - AluSp SINE Alu -3 310 136 490 291 102 11 chr13 32757096 32757467 -86987431 - L1M4 LINE L1 -1212 4934 4530 321 324 65 46 chr13 32757506 32757834 -86987064 + L2 LINE L2 2635 3055 -258 458 338 47 5 chr13 32757834 32758263 -86986635 + L1M4 LINE L1 3964 4410 -1736 333 214 90 11 chr13 32758264 32758353 -86986545 + L1M4 LINE L1 4419 4514 -1632 753 257 58 35 chr13 32758393 32758929 -86985969 + L1M4 LINE L1 3159 3747 -2399 36 53 0 0 chr13 32758945 32759002 -86985896 + AT_rich Low_complexity Low_complexity 1 57 0 37 23 0 0 chr13 32759118 32759162 -86985736 + AT_rich Low_complexity Low_complexity 1 44 0 1780 243 67 80 chr13 32759182 32760312 -86984586 + L1M4 LINE L1 3797 4912 -1234 24487 42 42 2 chr13 32760316 32763562 -86981336 + L1P LINE L1 3 3378 -2768 277 206 0 27 chr13 32764613 32764686 -86980212 + MER116 DNA Mariner 2 72 -8 306 106 0 0 chr13 32765475 32765522 -86979376 + (GA)n Simple_repeat Simple_repeat 2 48 0 14471 24 1 0 chr13 32766749 32769223 -86975675 + L1PA3 LINE L1 3677 6151 -4 346 264 147 48 chr13 32769237 32769468 -86975430 + L1M4 LINE L1 4566 4819 -1327 325 218 26 26 chr13 32769823 32769901 -86974997 - MIR SINE MIR -113 149 72 1121 191 69 132 chr13 32771055 32771478 -86973420 - MSTD LTR MaLR 0 396 1 3067 268 61 35 chr13 32771748 32772718 -86972180 + L2 LINE L2 2045 3034 -279 2658 184 5 40 chr13 32772725 32773294 -86971604 - MER89 LTR ERV1 -10 549 1 500 313 85 31 chr13 32773294 32773553 -86971345 + L2 LINE L2 3032 3304 -9 2121 192 35 76 chr13 32773607 32773793 -86971105 + L1MD3 LINE L1 7415 7607 -388 2145 85 0 21 chr13 32773793 32774074 -86970824 + AluY SINE Alu 37 311 0 2121 192 35 76 chr13 32774074 32774490 -86970408 + L1MD3 LINE L1 7607 7992 -3 234 279 93 107 chr13 32774770 32774910 -86969988 - L2 LINE L2 -219 3053 2916 1743 175 0 7 chr13 32775738 32776018 -86968880 + AluJb SINE Alu 1 278 -34 797 230 151 42 chr13 32776592 32776949 -86967949 - L1ME1 LINE L1 -5 6161 5766 1586 251 77 20 chr13 32776998 32777277 -86967621 - MER97a DNA MER1_type? -334 560 298 210 37 0 0 chr13 32777277 32777304 -86967594 + (TG)n Simple_repeat Simple_repeat 2 28 0 1586 251 77 20 chr13 32777304 32777531 -86967367 - MER97a DNA MER1_type? -596 298 25 246 176 0 0 chr13 32777859 32777910 -86966988 + GA-rich Low_complexity Low_complexity 2 52 0 186 310 113 14 chr13 32778443 32778514 -86966384 + L2 LINE L2 3186 3263 -9 262 365 88 0 chr13 32779856 32780004 -86964894 - L2 LINE L2 -218 3054 2894 269 373 28 14 chr13 32780045 32780187 -86964711 - L2 LINE L2 -486 2828 2685 204 222 0 0 chr13 32781977 32782013 -86962885 + polypurine Low_complexity Low_complexity 1 36 0 180 125 0 0 chr13 32782544 32782576 -86962322 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 207 269 115 26 chr13 32782640 32782718 -86962180 + L2 LINE L2 3161 3245 -27 29 60 0 0 chr13 32782803 32782853 -86962045 + AT_rich Low_complexity Low_complexity 1 50 0 576 215 80 10 chr13 32783513 32783713 -86961185 + MER33 DNA MER1_type 12 225 -99 364 271 0 8 chr13 32783768 32783886 -86961012 + MER33 DNA MER1_type 245 361 -2 531 315 79 68 chr13 32783950 32784394 -86960504 + L1MEd LINE L1 2 450 -5669 663 313 70 12 chr13 32784536 32785054 -86959844 + L1M4 LINE L1 3223 3770 -2376 387 191 11 11 chr13 32785095 32785184 -86959714 + L1ME1 LINE L1 5893 5981 -185 1271 258 103 4 chr13 32785297 32785773 -86959125 + L1MC4 LINE L1 6935 7457 -585 403 286 12 12 chr13 32785893 32786064 -86958834 + L1MC4 LINE L1 7864 8034 -8 194 103 0 51 chr13 32786195 32786234 -86958664 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 227 288 18 96 chr13 32787419 32787752 -86957146 + L2 LINE L2 2343 2649 -665 1347 209 110 128 chr13 32789270 32790224 -86954674 - LTR1B LTR ERV1 0 1020 3 24 0 0 0 chr13 32790781 32790805 -86954093 + AT_rich Low_complexity Low_complexity 1 24 0 1761 242 87 23 chr13 32791222 32791788 -86953110 - MER21B LTR ERV1 -105 758 157 1907 153 0 11 chr13 32792010 32792326 -86952572 + AluJb SINE Alu 7 319 0 226 204 45 0 chr13 32792326 32792370 -86952528 - MER21B LTR ERV1 -771 92 47 341 289 13 7 chr13 32792612 32792761 -86952137 - L1M4 LINE L1 -1448 4698 4549 1376 214 109 19 chr13 32792793 32793186 -86951712 + MLT1E1 LTR MaLR 6 367 -257 939 248 8 20 chr13 32793203 32793457 -86951441 + AluSx SINE Alu 10 260 -52 1454 96 5 0 chr13 32793558 32793745 -86951153 + AluSg/x SINE Alu 120 307 -3 1003 213 4 29 chr13 32793752 32793996 -86950902 + MLT1E1 LTR MaLR 385 622 -2 21 71 0 0 chr13 32794050 32794092 -86950806 + AT_rich Low_complexity Low_complexity 1 42 0 725 313 111 27 chr13 32794231 32794707 -86950191 - L1M4 LINE L1 -1949 4197 3682 399 229 27 122 chr13 32794841 32795029 -86949869 - MER102a DNA MER1_type -8 322 153 2273 68 3 10 chr13 32796285 32796580 -86948318 - AluSq SINE Alu -20 293 1 699 236 56 14 chr13 32796696 32796921 -86947977 - MLT1J2 LTR MaLR -214 236 1 213 305 28 77 chr13 32798502 32798715 -86946183 + MIR SINE MIR 20 219 -43 376 337 0 18 chr13 32799032 32799195 -86945703 - MIR SINE MIR -32 230 71 296 256 144 0 chr13 32800230 32800320 -86944578 + MIR SINE MIR 30 132 -76 241 356 43 17 chr13 32800363 32800478 -86944420 - L2 LINE L2 -5 3308 3191 262 280 210 14 chr13 32801923 32802066 -86942832 + MIR SINE MIR 81 251 -11 1610 167 48 0 chr13 32803747 32804040 -86940858 - Tigger3(Golem) DNA MER2_type -2 3027 2721 1738 170 3 7 chr13 32804949 32805232 -86939666 + AluJo SINE Alu 1 282 -30 198 118 0 0 chr13 32805235 32805269 -86939629 + (TAA)n Simple_repeat Simple_repeat 2 35 0 379 258 10 10 chr13 32805689 32805786 -86939112 - MIR3 SINE MIR 0 208 112 384 318 8 58 chr13 32805940 32806182 -86938716 + MLT1H LTR MaLR 31 260 -289 234 296 93 0 chr13 32806298 32806406 -86938492 + MLT1H LTR MaLR 421 538 -11 238 363 56 31 chr13 32806717 32806877 -86938021 + MIR SINE MIR 21 184 -78 25 51 0 0 chr13 32808174 32808213 -86936685 + AT_rich Low_complexity Low_complexity 1 39 0 309 268 179 0 chr13 32808448 32808560 -86936338 - MIR SINE MIR -2 260 129 2542 77 0 0 chr13 32808740 32809051 -86935847 - AluY SINE Alu 0 311 1 1004 259 44 24 chr13 32809213 32809486 -86935412 + L1MEc LINE L1 159 425 -5971 2313 146 28 0 chr13 32809486 32809876 -86935022 + MER57A LTR ERV1 3 403 0 1004 259 44 24 chr13 32809876 32810615 -86934283 + L1MEc LINE L1 425 1237 -5159 327 339 57 32 chr13 32810718 32810998 -86933900 - MLT1K LTR MaLR -132 456 170 239 336 67 25 chr13 32811279 32811398 -86933500 + L2 LINE L2 3137 3260 -12 186 43 0 0 chr13 32811550 32811573 -86933325 + (T)n Simple_repeat Simple_repeat 1 23 0 297 218 13 13 chr13 32812533 32812611 -86932287 - HsTC2 DNA Tc2 -1820 78 1 376 304 52 0 chr13 32814555 32814690 -86930208 + MIR SINE MIR 51 192 -70 330 286 118 32 chr13 32814907 32815127 -86929771 + L2 LINE L2 2359 2597 -717 246 359 22 0 chr13 32815258 32815350 -86929548 + L2 LINE L2 3216 3309 -4 229 245 75 0 chr13 32815374 32815427 -86929471 - MIR SINE MIR -87 175 119 530 90 0 0 chr13 32815705 32815783 -86929115 - Alu SINE Alu -2 308 231 805 235 27 76 chr13 32817080 32817184 -86927714 - L1ME2 LINE L1 -5 6159 6051 2474 123 55 26 chr13 32817184 32817600 -86927298 + MSTC LTR MaLR 1 428 0 805 235 27 76 chr13 32817600 32817823 -86927075 - L1ME2 LINE L1 -113 6051 5848 946 231 103 41 chr13 32817930 32818320 -86926578 - MLT1G LTR MaLR -151 439 26 2029 147 14 0 chr13 32818539 32818832 -86926066 + AluSx SINE Alu 1 297 -15 404 177 0 62 chr13 32819195 32819291 -86925607 + MLT1D LTR MaLR 20 109 -517 1313 241 33 41 chr13 32819296 32819795 -86925103 + MLT1C LTR MaLR 6 505 0 896 194 112 23 chr13 32819806 32820064 -86924834 + MLT1D LTR MaLR 153 433 -72 2071 175 13 8 chr13 32820150 32820538 -86924360 + MLT1B LTR MaLR 1 390 0 220 374 84 9 chr13 32820559 32820666 -86924232 - MIR3 SINE MIR -54 154 40 341 294 126 14 chr13 32821707 32821850 -86923048 - MIR SINE MIR -84 178 20 197 257 196 34 chr13 32821844 32821992 -86922906 - MIR SINE MIR -22 240 69 * 837 201 11 11 chr13 32822317 32822506 -86922392 - MER53 DNA DNA 0 189 1 2884 152 47 80 chr13 32822614 32823461 -86921437 + L1MB8 LINE L1 5140 5964 -214 1979 104 61 0 chr13 32823461 32823739 -86921159 + AluY SINE Alu 1 295 -16 2884 152 47 80 chr13 32823739 32823780 -86921118 + L1MB8 LINE L1 5964 6005 -173 488 196 9 0 chr13 32823899 32824006 -86920892 + L1MB8 LINE L1 6064 6171 -7 1730 192 0 22 chr13 32824073 32824390 -86920508 + AluJo SINE Alu 2 311 -1 686 173 39 45 chr13 32824491 32824670 -86920228 + MLT1A1 LTR MaLR 185 362 -3 319 247 45 0 chr13 32824673 32824762 -86920136 - L1MC4a LINE L1 -1105 6703 6611 25 51 0 0 chr13 32824866 32824905 -86919993 + AT_rich Low_complexity Low_complexity 1 39 0 25285 92 21 3 chr13 32824910 32829519 -86915379 - L1PA8 LINE L1 -20 6467 1778 6805 105 3 15 chr13 32829510 32830520 -86914378 - L1PA8 LINE L1 -5454 1007 10 * 2060 156 0 3 chr13 32830535 32830837 -86914061 - AluSx SINE Alu -11 301 1 705 218 94 0 chr13 32831106 32831207 -86913691 - MER5A DNA MER1_type 0 189 99 225 0 0 0 chr13 32831207 32831232 -86913666 + (TG)n Simple_repeat Simple_repeat 1 25 0 705 218 94 0 chr13 32831232 32831300 -86913598 - MER5A DNA MER1_type -90 99 4 1612 189 106 64 chr13 32832012 32832468 -86912430 + MER34B LTR ERV1 1 467 -98 1619 206 3 10 chr13 32832468 32832769 -86912129 + AluJo SINE Alu 1 299 -13 1612 189 106 64 chr13 32832769 32832873 -86912025 + MER34B LTR ERV1 467 565 0 282 56 0 0 chr13 32832993 32833029 -86911869 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1438 182 74 4 chr13 32833032 32833179 -86911719 - AluJo SINE Alu -30 282 147 327 49 0 0 chr13 32833179 32833220 -86911678 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1438 182 74 4 chr13 32833220 32833330 -86911568 - AluJo SINE Alu -165 147 7 28 29 0 0 chr13 32833341 32833376 -86911522 + AT_rich Low_complexity Low_complexity 1 35 0 2407 61 6 10 chr13 32833860 32834172 -86910726 - AluY SINE Alu 0 311 1 279 0 0 0 chr13 32834255 32834286 -86910612 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 449 212 27 49 chr13 32834407 32834460 -86910438 - MER53 DNA DNA -2 187 134 2189 141 122 8 chr13 32834460 32834844 -86910054 - MSTA LTR MaLR 0 428 1 449 212 27 49 chr13 32834844 32834974 -86909924 - MER53 DNA DNA -55 134 8 2456 69 0 13 chr13 32835138 32835443 -86909455 - AluY SINE Alu -10 301 1 452 191 0 0 chr13 32835610 32835694 -86909204 + LTR62 LTR ERVK 1 84 -635 3355 154 40 27 chr13 32835795 32836470 -86908428 + LTR62 LTR ERVK 34 717 -2 618 277 27 27 chr13 32836519 32836743 -86908155 - MLT1H1 LTR MaLR -5 550 327 983 225 100 81 chr13 32836759 32837230 -86907668 + MER34 LTR ERV1 3 482 -60 243 241 35 0 chr13 32837230 32837317 -86907581 + (TA)n Simple_repeat Simple_repeat 1 90 0 706 222 34 36 chr13 32837433 32837676 -86907222 - MLT1H1 LTR MaLR -291 264 1 294 188 31 0 chr13 32837915 32838011 -86906887 + (TA)n Simple_repeat Simple_repeat 1 99 0 487 253 32 19 chr13 32838011 32838169 -86906729 + MER105 DNA DNA 43 202 -2 330 26 0 0 chr13 32838355 32838394 -86906504 + (CA)n Simple_repeat Simple_repeat 2 40 0 2738 7 0 3 chr13 32838603 32838905 -86905993 - AluYa5 SINE Alu -10 301 1 2546 211 31 31 chr13 32839250 32839800 -86905098 - MLT2B3 LTR ERVL -2 552 3 208 386 8 24 chr13 32841292 32841419 -86903479 - L2 LINE L2 -482 2832 2708 1017 275 144 27 chr13 32841549 32841952 -86902946 - L2 LINE L2 0 3313 2864 527 84 56 47 chr13 32842326 32842433 -86902465 + LTR45B LTR ERV1 343 450 -39 495 281 189 6 chr13 32842546 32842710 -86902188 - L2 LINE L2 -586 2728 2535 312 236 69 0 chr13 32844078 32844150 -86900748 + MIR SINE MIR 61 137 -71 1562 150 78 38 chr13 32844164 32844371 -86900527 - MER46B DNA MER2_type -2495 236 133 1848 177 7 7 chr13 32844371 32844670 -86900228 + AluJb SINE Alu 1 299 -13 1562 150 78 38 chr13 32844670 32844808 -86900090 - MER46B DNA MER2_type -2598 133 2 449 314 68 39 chr13 32844821 32845028 -86899870 - MIR SINE MIR -46 216 4 1926 206 40 0 chr13 32845192 32845571 -86899327 + MSTD LTR MaLR 1 394 -2 252 0 0 0 chr13 32845644 32845672 -86899226 + (CA)n Simple_repeat Simple_repeat 1 28 0 986 211 24 87 chr13 32846345 32846736 -86898162 + L1ME1 LINE L1 5674 6034 -132 2032 219 7 7 chr13 32846746 32847171 -86897727 - MLT1C LTR MaLR 0 467 43 2488 161 37 40 chr13 32847171 32847741 -86897157 - MER34C LTR ERV1 0 585 18 287 130 0 0 chr13 32847712 32847758 -86897140 - MLT1C LTR MaLR -421 46 1 * 437 148 188 0 chr13 32847758 32847859 -86897039 + L1ME1 LINE L1 6042 6161 -5 261 139 0 0 chr13 32848169 32848212 -86896686 + (CA)n Simple_repeat Simple_repeat 2 44 0 361 259 114 48 chr13 32848229 32848395 -86896503 + L2 LINE L2 2915 3091 -181 7590 178 94 9 chr13 32848931 32850745 -86894153 - L1 LINE L1 -3706 2676 681 261 0 0 0 chr13 32850745 32850774 -86894124 + (TG)n Simple_repeat Simple_repeat 2 30 0 7590 178 94 9 chr13 32850774 32850901 -86893997 - L1 LINE L1 -5701 681 566 231 321 46 9 chr13 32850958 32851067 -86893831 - MER117 DNA MER1_type -51 146 34 289 331 82 0 chr13 32852031 32852183 -86892715 - MIR SINE MIR -54 208 45 515 296 43 5 chr13 32853642 32853828 -86891070 - MIR SINE MIR -14 248 56 498 248 0 0 chr13 32854505 32854922 -86889976 + (TG)n Simple_repeat Simple_repeat 1 417 0 233 268 0 0 chr13 32855338 32855394 -86889504 + (CA)n Simple_repeat Simple_repeat 1 56 0 548 232 6 0 chr13 32855406 32855583 -86889315 + (CA)n Simple_repeat Simple_repeat 1 178 0 263 275 88 47 chr13 32855889 32856060 -86888838 - L2 LINE L2 -955 2359 2182 1937 155 3 28 chr13 32859762 32860079 -86884819 - AluJb SINE Alu -3 309 1 196 294 162 0 chr13 32860080 32860148 -86884750 + MIR SINE MIR 114 192 -70 1044 266 58 30 chr13 32861011 32861406 -86883492 - MLT1I LTR MaLR 0 409 4 791 188 8 0 chr13 32861775 32861908 -86882990 + MER2 DNA MER2_type 1 134 -211 368 256 12 0 chr13 32861963 32862045 -86882853 + MER2 DNA MER2_type 263 345 0 274 189 21 53 chr13 32863117 32863212 -86881686 - MLT1I LTR MaLR 0 409 318 8928 116 58 12 chr13 32863246 32864689 -86880209 + THE1C-int LTR MaLR 67 1574 -6 1152 190 203 16 chr13 32864694 32865010 -86879888 + THE1C LTR MaLR 1 375 0 462 318 96 46 chr13 32865137 32865187 -86879711 - MIR SINE MIR -1 261 215 2302 94 0 0 chr13 32865187 32865475 -86879423 - AluSg SINE Alu -21 289 2 462 318 96 46 chr13 32865475 32865663 -86879235 - MIR SINE MIR -47 215 11 1128 249 86 90 chr13 32865818 32866042 -86878856 - MLT1E LTR MaLR -1 592 369 2348 83 0 6 chr13 32866042 32866355 -86878543 + AluY SINE Alu 1 311 0 1128 249 86 90 chr13 32866355 32866664 -86878234 - MLT1E LTR MaLR -224 369 61 366 313 41 29 chr13 32866967 32867312 -86877586 - L1ME4a LINE L1 -183 5938 5590 284 236 43 41 chr13 32867631 32867777 -86877121 - L1ME4a LINE L1 -646 5475 5327 666 266 41 22 chr13 32869638 32869905 -86874993 - L1ME4a LINE L1 -1031 5115 4844 835 228 43 17 chr13 32870127 32870483 -86874415 + L1M4 LINE L1 5144 5511 -667 239 233 0 0 chr13 32870488 32870548 -86874350 + LTR68 LTR ERV1 5 64 -676 1831 164 53 0 chr13 32870724 32871065 -86873833 + MER47A DNA MER2_type 8 366 0 3672 187 25 36 chr13 32871216 32871444 -86873454 + L1MB8 LINE L1 4902 5131 -1047 2477 177 88 4 chr13 32871444 32871924 -86872974 - MLT2B1 LTR ERVL 0 520 1 3672 187 25 36 chr13 32871924 32872895 -86872003 + L1MB8 LINE L1 5131 6084 -94 800 278 91 37 chr13 32875895 32876098 -86868800 - HAL1 LINE L1 -383 2124 1933 306 0 0 0 chr13 32876098 32876132 -86868766 + (TG)n Simple_repeat Simple_repeat 2 35 0 800 278 91 37 chr13 32876132 32876388 -86868510 - HAL1 LINE L1 -574 1933 1640 21 0 0 0 chr13 32876415 32876436 -86868462 + AT_rich Low_complexity Low_complexity 1 21 0 1366 274 120 58 chr13 32876634 32878122 -86866776 - HAL1 LINE L1 -927 1580 1 251 243 99 45 chr13 32878860 32878971 -86865927 - MER117 DNA MER1_type -79 118 2 286 136 0 0 chr13 32881072 32881116 -86863782 + AluSx SINE Alu 1 44 -258 2101 92 46 0 chr13 32881117 32881398 -86863500 + AluSx SINE Alu 15 308 -4 692 48 0 0 chr13 32882127 32882210 -86862688 + AluSx SINE Alu 23 105 -207 847 230 14 14 chr13 32882210 32882469 -86862429 - LTR12 LTR ERV1 -136 578 216 1206 166 5 45 chr13 32882617 32882840 -86862058 + AluSx SINE Alu 99 312 0 268 298 255 27 chr13 32883069 32883257 -86861641 + MIR SINE MIR 16 246 -16 198 156 0 0 chr13 32883280 32883325 -86861573 + A-rich Low_complexity Low_complexity 1 45 0 500 250 86 0 chr13 32884374 32884526 -86860372 - MLT2F LTR ERVL -14 649 485 416 286 61 0 chr13 32884769 32884916 -86859982 + MIR SINE MIR 36 191 -71 467 249 167 17 chr13 32884919 32885152 -86859746 - L2 LINE L2 0 3313 3046 1385 221 97 19 chr13 32885153 32885515 -86859383 - MLT1E LTR MaLR 0 593 204 336 334 51 68 chr13 32885677 32885939 -86858959 - L2 LINE L2 -258 3055 2798 749 216 92 80 chr13 32887301 32887824 -86857074 - L1M4 LINE L1 -1296 4850 4322 234 0 0 0 chr13 32888156 32888182 -86856716 + (TTG)n Simple_repeat Simple_repeat 2 27 0 225 289 100 22 chr13 32888553 32888643 -86856255 - MIR SINE MIR -101 161 65 22 56 0 0 chr13 32890345 32890381 -86854517 + AT_rich Low_complexity Low_complexity 1 36 0 243 324 65 14 chr13 32890834 32890973 -86853925 - L2 LINE L2 -1 3312 3167 212 338 83 8 chr13 32891233 32891366 -86853532 - L2 LINE L2 -602 2712 2570 291 71 0 0 chr13 32892216 32892258 -86852640 + (TG)n Simple_repeat Simple_repeat 1 42 0 3894 179 95 3 chr13 32893575 32894331 -86850567 + LTR1B LTR ERV1 1 826 0 2171 104 0 7 chr13 32896088 32896386 -86848512 + AluY SINE Alu 1 296 -15 22 0 0 0 chr13 32896917 32896939 -86847959 + AT_rich Low_complexity Low_complexity 1 22 0 2275 110 13 0 chr13 32897047 32897355 -86847543 + AluSx SINE Alu 1 312 0 287 299 127 0 chr13 32897608 32897742 -86847156 - L2 LINE L2 0 3272 3122 205 312 37 107 chr13 32898200 32898415 -86846483 + L2 LINE L2 298 497 -2817 260 264 58 0 chr13 32898614 32898701 -86846197 - MLT1J LTR MaLR -35 476 385 1153 233 56 15 chr13 32898721 32899112 -86845786 + LTR52 LTR ERVL 1 407 -14 919 319 31 11 chr13 32899127 32899481 -86845417 - MLT1J LTR MaLR -149 362 2 251 265 0 36 chr13 32899928 32900011 -86844887 + CT-rich Low_complexity Low_complexity 1 80 0 2085 148 0 7 chr13 32900301 32900604 -86844294 - AluSq SINE Alu -12 301 1 826 253 140 80 chr13 32900677 32901176 -86843722 - MLT1F1 LTR MaLR -10 557 4 897 324 140 44 chr13 32901191 32902599 -86842299 + L2 LINE L2 1756 3309 -4 1275 188 122 24 chr13 32902599 32902934 -86841964 - MER39 LTR ERV1 0 707 340 473 228 110 8 chr13 32902937 32903064 -86841834 - MER39 LTR ERV1 -567 140 1 895 185 85 25 chr13 32903835 32904035 -86840863 - AluJo SINE Alu -1 311 100 1547 173 121 36 chr13 32904054 32904243 -86840655 + LTR2B LTR ERV1 34 205 -285 246 62 0 0 chr13 32904243 32904275 -86840623 + (TTCTG)n Simple_repeat Simple_repeat 2 33 0 1547 173 121 36 chr13 32904275 32904506 -86840392 + LTR2B LTR ERV1 205 490 0 331 286 19 8 chr13 32904506 32904632 -86840266 - AluJ SINE Alu -197 105 17 234 224 0 0 chr13 32906023 32906072 -86838826 - L2 LINE L2 0 3313 3265 333 186 0 0 chr13 32906158 32906228 -86838670 + (CTA)n Simple_repeat Simple_repeat 2 71 0 256 200 44 33 chr13 32906743 32906833 -86838065 - HAL1 LINE L1 -476 2031 1941 589 242 81 57 chr13 32906861 32907279 -86837619 - HAL1 LINE L1 -1048 1459 1032 374 331 12 45 chr13 32907454 32907696 -86837202 + L2 LINE L2 3080 3313 0 300 282 72 76 chr13 32908240 32908502 -86836396 - L1ME LINE L1 -634 5528 5268 3456 259 46 7 chr13 32908605 32909596 -86835302 + ERVL LTR ERVL 1484 2513 -3251 533 318 10 28 chr13 32909597 32909847 -86835051 + ERVL LTR ERVL 2641 2892 -2768 453 239 99 85 chr13 32909847 32910048 -86834850 + MER58C DNA MER1_type 1 204 -11 2231 256 41 4 chr13 32910055 32910618 -86834280 + ERVL LTR ERVL 2921 3504 -2260 367 199 14 2 chr13 32910631 32910712 -86834186 + ERVL LTR ERVL 4285 4399 -1120 810 136 0 57 chr13 32910943 32911083 -86833815 - FLAM_C SINE Alu -1 132 1 2531 300 57 15 chr13 32911085 32912517 -86832381 + ERVL LTR ERVL 3633 5122 -363 1997 176 7 90 chr13 32912524 32913082 -86831816 + L1MB8 LINE L1 5667 6178 0 421 289 8 16 chr13 32913083 32913211 -86831687 + ERVL LTR ERVL 5176 5302 -462 459 183 206 0 chr13 32913222 32913353 -86831545 - L1MD3 LINE L1 -1020 6975 6818 * 755 290 89 47 chr13 32913352 32914058 -86830840 - L1MEc LINE L1 -4128 2268 1533 303 293 36 72 chr13 32914248 32914582 -86830316 - L1M4 LINE L1 -2054 4092 3771 2106 99 3 54 chr13 32914744 32915058 -86829840 + AluSp SINE Alu 1 298 -15 518 283 139 9 chr13 32915501 32915731 -86829167 - HsTC2a DNA Tc2 -467 277 18 23 33 0 0 chr13 32916238 32916268 -86828630 + AT_rich Low_complexity Low_complexity 1 30 0 191 300 0 0 chr13 32916817 32916867 -86828031 - MIR SINE MIR -10 252 203 368 312 75 23 chr13 32917116 32917289 -86827609 + MLT1J2 LTR MaLR 255 436 -14 318 245 69 58 chr13 32917495 32917617 -86827281 + MIR SINE MIR 30 152 -60 2356 183 14 20 chr13 32919238 32919741 -86825157 + MER89 LTR ERV1 1 500 -59 192 261 0 0 chr13 32920364 32920429 -86824469 + CT-rich Low_complexity Low_complexity 1 65 0 225 94 0 0 chr13 32920441 32920473 -86824425 + (T)n Simple_repeat Simple_repeat 1 32 0 2153 100 4 0 chr13 32922313 32922593 -86822305 + AluSg SINE Alu 17 297 -13 217 281 0 16 chr13 32923274 32923338 -86821560 + L2 LINE L2 3210 3272 0 394 202 25 25 chr13 32923775 32923894 -86821004 - MER103 DNA DNA -25 141 23 1268 218 7 24 chr13 32924119 32924408 -86820490 + MLT1C LTR MaLR 1 284 -183 323 185 9 130 chr13 32924400 32924508 -86820390 - MER4A LTR ERV1 -197 467 373 * 228 111 22 22 chr13 32924562 32924607 -86820291 - MER4A LTR ERV1 -566 98 54 966 185 39 5 chr13 32924626 32924831 -86820067 + MLT1C LTR MaLR 248 459 -8 286 351 177 26 chr13 32924882 32925147 -86819751 + L2 LINE L2 2968 3272 0 2022 130 0 0 chr13 32926413 32926690 -86818208 - AluSx SINE Alu -15 297 21 351 96 0 0 chr13 32926722 32926774 -86818124 + (TG)n Simple_repeat Simple_repeat 2 53 0 2661 166 66 4 chr13 32926789 32927302 -86817596 - L1MB3 LINE L1 -3 6180 5636 201 208 21 0 chr13 32927435 32927483 -86817415 + (TTA)n Simple_repeat Simple_repeat 3 51 0 205 191 48 0 chr13 32927868 32927910 -86816988 - MIR SINE MIR -111 151 108 231 113 19 38 chr13 32928096 32928149 -86816749 + (TA)n Simple_repeat Simple_repeat 1 52 0 664 269 47 0 chr13 32928218 32928389 -86816509 + MIR SINE MIR 78 256 -6 831 258 77 65 chr13 32928941 32929445 -86815453 + LTR33A LTR ERVL 2 511 -12 504 291 105 12 chr13 32930179 32930351 -86814547 - MIR SINE MIR -63 199 12 2054 120 40 0 chr13 32931125 32931425 -86813473 - AluSq SINE Alu -1 312 1 371 310 166 51 chr13 32932870 32933280 -86811618 - L2 LINE L2 -1 3271 2815 186 261 0 0 chr13 32933960 32934006 -86810892 + MIR SINE MIR 171 216 -46 3678 65 43 0 chr13 32934359 32934851 -86810047 - LTR10D LTR ERV1 0 513 1 22 0 0 0 chr13 32935255 32935277 -86809621 + AT_rich Low_complexity Low_complexity 1 22 0 218 255 0 0 chr13 32936309 32936356 -86808542 + MIR SINE MIR 100 146 -116 22 35 0 0 chr13 32936411 32936440 -86808458 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr13 32939026 32939047 -86805851 + (CAA)n Simple_repeat Simple_repeat 2 22 0 209 176 0 20 chr13 32939597 32939648 -86805250 + CT-rich Low_complexity Low_complexity 2 51 0 691 239 171 11 chr13 32940913 32941177 -86803721 - LTR16A LTR ERVL 0 450 145 498 325 86 11 chr13 32941271 32941551 -86803347 + L2 LINE L2 2384 2684 -630 1014 231 37 34 chr13 32941781 32942131 -86802767 - LTR37A LTR ERV1 -58 368 18 361 204 19 46 chr13 32942236 32942344 -86802554 - MER94 DNA DNA -29 105 1 331 252 27 45 chr13 32944851 32944962 -86799936 - L1ME4a LINE L1 -69 6052 5944 446 265 112 19 chr13 32944966 32945181 -86799717 - L1ME4a LINE L1 -254 5867 5633 450 0 0 0 chr13 32945197 32945247 -86799651 + (TG)n Simple_repeat Simple_repeat 2 51 0 249 286 29 14 chr13 32946707 32946777 -86798121 - L2 LINE L2 -11 3261 3191 186 143 0 0 chr13 32946807 32946842 -86798056 + (TAG)n Simple_repeat Simple_repeat 3 37 0 452 254 147 52 chr13 32946842 32947074 -86797824 - MIR SINE MIR 0 262 9 183 307 27 40 chr13 32947115 32947190 -86797708 + MIR SINE MIR 89 162 -100 300 118 0 0 chr13 32947912 32947963 -86796935 + L1MB2 LINE L1 6079 6129 -42 227 196 0 18 chr13 32948528 32948584 -86796314 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 257 77 26 0 chr13 32949571 32949610 -86795288 - MSTD LTR MaLR 0 396 357 504 157 11 0 chr13 32949621 32949710 -86795188 - MLT1A1-int LTR MaLR -1645 90 1 1391 210 8 72 chr13 32949710 32950100 -86794798 - MLT1A1 LTR MaLR 0 365 1 798 199 117 123 chr13 32950173 32950540 -86794358 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr13 32950613 32950634 -86794264 + AT_rich Low_complexity Low_complexity 1 21 0 404 280 88 39 chr13 32951371 32951553 -86793345 - L2 LINE L2 -4 3309 3119 655 92 0 0 chr13 32952164 32952308 -86792590 + AluSc SINE Alu 195 338 0 292 284 23 0 chr13 32952663 32952751 -86792147 + L1ME LINE L1 5553 5642 -479 1293 274 108 27 chr13 32952766 32953545 -86791353 + L2 LINE L2 2446 3310 -3 744 175 68 178 chr13 32953761 32953916 -86790982 + MLT1A1 LTR MaLR 4 174 -191 1639 119 0 5 chr13 32953916 32954135 -86790763 - AluSg/x SINE Alu -20 290 73 744 175 68 178 chr13 32954135 32954378 -86790520 + MLT1A1 LTR MaLR 174 358 -7 313 259 309 31 chr13 32956255 32956417 -86788481 - MIR SINE MIR -48 214 8 586 291 84 53 chr13 32956453 32956776 -86788122 + MLT1G1 LTR MaLR 47 379 -216 244 314 20 72 chr13 32956913 32957066 -86787832 - MER45C DNA AcHobo -488 465 321 646 257 208 4 chr13 32957069 32957310 -86787588 - MER45C DNA AcHobo -576 377 88 337 206 48 0 chr13 32958192 32958255 -86786643 + MER5A DNA MER1_type 124 189 0 1771 189 0 0 chr13 32958618 32958909 -86785989 - AluJo SINE Alu -19 293 3 292 277 176 34 chr13 32958922 32959070 -86785828 + MIR SINE MIR 53 221 -41 180 307 9 53 chr13 32959096 32959210 -86785688 + MIR SINE MIR 108 216 -46 360 0 0 0 chr13 32960154 32960194 -86784704 + (CA)n Simple_repeat Simple_repeat 2 41 0 3134 179 52 42 chr13 32960822 32961603 -86783295 - L1MB1 LINE L1 -12 6220 5432 1683 224 10 0 chr13 32961604 32961987 -86782911 - L1MB1 LINE L1 -912 5298 4912 1074 222 35 106 chr13 32961995 32962390 -86782508 - L1MB1 LINE L1 -4517 1614 1277 5696 45 22 18 chr13 32962390 32963105 -86781793 + SVA Other Other 665 1382 -4 1074 222 35 106 chr13 32963105 32963440 -86781458 - L1MB1 LINE L1 -4854 1277 920 293 314 12 0 chr13 32963428 32963514 -86781384 - L1MB1 LINE L1 -5151 990 904 * 274 286 39 78 chr13 32963991 32964145 -86780753 - L1MB1 LINE L1 -5487 644 497 819 365 69 11 chr13 32964174 32964607 -86780291 - L1MB1 LINE L1 -5683 458 1 2456 91 0 0 chr13 32964781 32965089 -86779809 + AluSc SINE Alu 1 308 -1 358 306 180 27 chr13 32965881 32966103 -86778795 + MIR SINE MIR 5 260 -2 246 174 152 43 chr13 32966098 32966190 -86778708 + L2 LINE L2 3134 3235 -78 * 1790 152 0 4 chr13 32967608 32967877 -86777021 - AluSx SINE Alu -42 270 3 847 248 9 77 chr13 32968213 32968536 -86776362 - L1MC5 LINE L1 -1021 6940 6640 2076 138 0 0 chr13 32968604 32968894 -86776004 - AluSx SINE Alu -22 290 1 499 320 59 41 chr13 32969260 32969647 -86775251 - HAL1b LINE L1 -734 614 221 684 211 26 10 chr13 32969806 32970000 -86774898 + L1MA4A LINE L1 5926 6122 -181 429 228 0 0 chr13 32970004 32970096 -86774802 + L1MA4A LINE L1 6189 6280 -23 2272 105 3 10 chr13 32970139 32970452 -86774446 - AluY SINE Alu 0 311 1 1807 226 51 44 chr13 32971618 32971887 -86773011 + L1MC4 LINE L1 7282 7548 -494 6733 76 5 2 chr13 32971887 32972844 -86772054 + L1PA7 LINE L1 5194 6152 -2 1807 226 51 44 chr13 32972844 32973166 -86771732 + L1MC4 LINE L1 7548 7877 -165 542 253 7 47 chr13 32973166 32973316 -86771582 + MER82 DNA MER2_type 1 144 -509 1217 185 25 126 chr13 32973316 32973721 -86771177 - MLT1A1 LTR MaLR 0 365 2 815 201 0 0 chr13 32973722 32973876 -86771022 + MER82 DNA MER2_type 140 293 -360 492 226 7 15 chr13 32973968 32974105 -86770793 + L1MC4 LINE L1 7907 8042 0 23 33 0 0 chr13 32975352 32975382 -86769516 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 32975457 32975478 -86769420 + AT_rich Low_complexity Low_complexity 1 21 0 197 284 134 0 chr13 32977060 32977127 -86767771 + MIR3 SINE MIR 81 156 -52 208 0 62 0 chr13 32977160 32977192 -86767706 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3225 22 0 0 chr13 32977192 32977562 -86767336 - L1PA3 LINE L1 -18 6137 5768 23 0 0 0 chr13 32978835 32978858 -86766040 + AT_rich Low_complexity Low_complexity 1 23 0 879 311 73 74 chr13 32979263 32979410 -86765488 + L1MEd LINE L1 75 221 -5898 1983 132 10 0 chr13 32979410 32979698 -86765200 - AluSc SINE Alu -18 291 1 879 311 73 74 chr13 32979698 32980021 -86764877 + L1MEd LINE L1 221 543 -5576 2598 153 29 14 chr13 32980021 32980504 -86764394 + L1MB2 LINE L1 5682 6171 0 879 311 73 74 chr13 32980504 32981198 -86763700 + L1MEd LINE L1 543 1239 -4880 333 200 17 0 chr13 32981254 32981314 -86763584 + MER70B LTR ERVL 1 61 -517 312 87 0 0 chr13 32981314 32981360 -86763538 + MADE1 DNA Mariner 1 46 -34 * 2156 213 17 5 chr13 32981359 32981767 -86763131 + MER70A LTR ERVL 60 472 0 323 278 86 35 chr13 32981829 32982084 -86762814 + L1MEd LINE L1 1430 1697 -4613 34 0 0 0 chr13 32982350 32982384 -86762514 + AT_rich Low_complexity Low_complexity 1 34 0 239 264 11 11 chr13 32982401 32982488 -86762410 - L1M4 LINE L1 -3525 2621 2535 1205 279 73 42 chr13 32983575 32984948 -86759950 + L1MDa LINE L1 1811 3242 -3298 699 310 108 23 chr13 32984955 32985342 -86759556 + L1MDa LINE L1 3395 3814 -2726 1418 278 79 30 chr13 32985464 32986159 -86758739 + L1MDa LINE L1 4090 4749 -1791 2401 211 19 64 chr13 32986159 32986800 -86758098 - LTR9 LTR ERV1 0 612 1 1418 278 79 30 chr13 32986800 32987298 -86757600 + L1MDa LINE L1 4749 5437 -1103 777 288 36 25 chr13 32987328 32987606 -86757292 + MLT1G LTR MaLR 10 290 -300 1752 220 65 21 chr13 32987676 32987852 -86757046 - MLT1D LTR MaLR 0 505 338 2021 138 6 13 chr13 32987852 32988164 -86756734 - AluSx SINE Alu -2 310 1 1752 220 65 21 chr13 32988164 32988460 -86756438 - MLT1D LTR MaLR -167 338 12 508 217 52 40 chr13 32988471 32988643 -86756255 + MLT1F LTR MaLR 356 507 -35 443 331 66 8 chr13 32989488 32989745 -86755153 - L3 LINE CR1 -166 1411 1140 413 299 140 62 chr13 32989749 32990214 -86754684 - MLT1J LTR MaLR 0 511 11 1753 127 0 0 chr13 32990274 32990511 -86754387 + AluSx SINE Alu 63 299 -13 428 346 56 5 chr13 32990706 32990920 -86753978 - L3 LINE CR1 -685 892 668 701 294 93 40 chr13 32992666 32993193 -86751705 + MLT1H1 LTR MaLR 1 555 0 407 277 216 28 chr13 32993398 32993611 -86751287 + MIR SINE MIR 10 262 0 228 86 0 0 chr13 32993799 32993834 -86751064 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2495 32 0 3 chr13 32993836 32994120 -86750778 - AluY SINE Alu -28 283 1 585 299 0 0 chr13 32994879 32995013 -86749885 + MER63 DNA MER1_type 1 760 -302 193 292 0 0 chr13 32996362 32996410 -86748488 - MIR SINE MIR -67 141 94 363 310 18 26 chr13 32996581 32996694 -86748204 - MIR SINE MIR -137 125 14 2579 97 11 6 chr13 32996955 32997317 -86747581 - THE1B LTR MaLR 0 364 1 375 23 0 0 chr13 32997972 32998016 -86746882 + (TG)n Simple_repeat Simple_repeat 2 45 0 25 51 0 0 chr13 32999232 32999271 -86745627 + AT_rich Low_complexity Low_complexity 1 39 0 1692 216 39 18 chr13 32999790 33000174 -86744724 - MSTD LTR MaLR -2 394 3 556 200 26 113 chr13 33000407 33000613 -86744285 + LTR37B LTR ERV1 186 358 -110 1517 174 24 24 chr13 33000613 33000901 -86743997 - AluJo SINE Alu -24 288 1 556 200 26 113 chr13 33000901 33001004 -86743894 + LTR37B LTR ERV1 358 468 0 428 272 73 31 chr13 33001438 33001629 -86743269 - MIR SINE MIR -43 219 21 368 348 76 67 chr13 33003381 33003897 -86741001 + L2 LINE L2 2766 3292 -21 1770 156 8 78 chr13 33004290 33004675 -86740223 + MLT1B LTR MaLR 1 358 -32 305 367 61 18 chr13 33005262 33005491 -86739407 + MIR SINE MIR 8 246 -16 552 261 65 62 chr13 33006566 33006826 -86738072 + MLT1H LTR MaLR 226 486 -63 223 286 14 14 chr13 33007745 33007815 -86737083 - MIR SINE MIR 0 262 193 1822 156 0 36 chr13 33008286 33008594 -86736304 + AluJo SINE Alu 1 297 -15 1653 239 90 37 chr13 33008693 33009182 -86735716 + MLT2B1 LTR ERVL 1 515 -5 230 43 29 87 chr13 33009686 33009755 -86735143 + (TA)n Simple_repeat Simple_repeat 1 65 0 243 45 26 110 chr13 33009785 33009940 -86734958 + (TA)n Simple_repeat Simple_repeat 2 143 0 402 47 77 47 chr13 33009957 33010127 -86734771 + (TA)n Simple_repeat Simple_repeat 2 176 0 280 254 42 17 chr13 33010213 33010331 -86734567 - L1MEc LINE L1 -4700 1696 1576 * 848 142 90 52 chr13 33010329 33010481 -86734417 - L1MA9 LINE L1 0 6312 6148 216 0 0 0 chr13 33010481 33010505 -86734393 + (TG)n Simple_repeat Simple_repeat 1 24 0 848 142 90 52 chr13 33010505 33010564 -86734334 - L1MA9 LINE L1 -164 6148 6093 249 33 0 0 chr13 33010598 33010628 -86734270 + (TA)n Simple_repeat Simple_repeat 1 30 0 1810 174 15 9 chr13 33010665 33011005 -86733893 - MER47A DNA MER2_type -3 363 22 363 96 0 0 chr13 33011007 33011059 -86733839 + (CA)n Simple_repeat Simple_repeat 2 53 0 230 79 0 26 chr13 33011223 33011261 -86733637 + (CAT)n Simple_repeat Simple_repeat 2 38 0 623 292 68 9 chr13 33011293 33011512 -86733386 + MIR SINE MIR 31 262 0 686 289 63 24 chr13 33011552 33011967 -86732931 - L1MCc LINE L1 -4121 3001 2571 41 0 0 0 chr13 33012006 33012047 -86732851 + AT_rich Low_complexity Low_complexity 1 41 0 17560 114 10 4 chr13 33012179 33015473 -86729425 - L1PA8A LINE L1 0 6446 3151 5522 177 13 32 chr13 33015474 33017520 -86727378 - L1PA8A LINE L1 -4288 2173 1 428 271 66 11 chr13 33017522 33017703 -86727195 - L1MCc LINE L1 -4639 2483 2293 * 5401 166 54 3 chr13 33017691 33018190 -86726708 - L1MA9 LINE L1 0 6312 5840 276 30 0 0 chr13 33018190 33018223 -86726675 + (TG)n Simple_repeat Simple_repeat 1 33 0 5401 166 54 3 chr13 33018223 33018876 -86726022 - L1MA9 LINE L1 -472 5840 5111 600 284 77 61 chr13 33018876 33019442 -86725456 - L1MCc LINE L1 -4805 2317 1761 1819 89 0 4 chr13 33019442 33019677 -86725221 - AluSc SINE Alu -4 305 72 600 284 77 61 chr13 33019677 33020079 -86724819 - L1MCc LINE L1 -5361 1761 1130 229 335 75 62 chr13 33020305 33020678 -86724220 - L1MCc LINE L1 -5965 458 81 2254 114 7 3 chr13 33020847 33021155 -86723743 - AluSc SINE Alu 0 309 1 313 227 209 18 chr13 33021495 33021605 -86723293 - MIR SINE MIR -81 181 51 189 306 46 37 chr13 33021686 33021794 -86723104 - MIR SINE MIR -59 203 95 1837 144 85 0 chr13 33023509 33023828 -86721070 - MER46B DNA MER2_type -14 222 2 2351 100 3 0 chr13 33025008 33025308 -86719590 + AluSx SINE Alu 1 301 -11 208 325 58 58 chr13 33025834 33025988 -86718910 - MIR SINE MIR -56 206 53 750 174 0 0 chr13 33026024 33026145 -86718753 - FLAM_A SINE Alu 0 142 22 2187 199 31 51 chr13 33026203 33026715 -86718183 - MLT1D LTR MaLR -2 503 2 249 277 65 65 chr13 33026986 33027141 -86717757 - MER103 DNA DNA -1 165 11 279 373 78 33 chr13 33028278 33028431 -86716467 - L2 LINE L2 -6 3266 3107 430 222 35 62 chr13 33028667 33028811 -86716087 - MER5B DNA MER1_type -1 177 38 496 276 60 10 chr13 33028994 33029144 -86715754 + MIR SINE MIR 2 153 -64 1825 248 113 4 chr13 33029184 33029714 -86715184 + L1MC4 LINE L1 7467 7995 0 632 288 85 33 chr13 33030542 33030966 -86713932 - L1MC/D LINE L1 -1998 5810 5365 496 284 168 5 chr13 33031179 33031376 -86713522 + MIR SINE MIR 23 251 -11 1644 194 54 44 chr13 33033002 33033388 -86711510 + MLT1B LTR MaLR 1 390 0 212 344 0 0 chr13 33033830 33033894 -86711004 - MIR3 SINE MIR -35 173 110 312 286 150 7 chr13 33033922 33034062 -86710836 + MIR SINE MIR 97 256 -6 1007 181 6 0 chr13 33034440 33034611 -86710287 + FRAM SINE Alu 1 168 -8 2243 99 3 3 chr13 33034611 33034903 -86709995 + AluSc SINE Alu 1 292 -17 332 198 0 12 chr13 33034929 33035010 -86709888 + GA-rich Low_complexity Low_complexity 3 82 0 226 301 27 0 chr13 33035456 33035529 -86709369 - MLT1J LTR MaLR -59 452 378 634 256 160 8 chr13 33035597 33035835 -86709063 - MLT1J LTR MaLR -237 274 1 2307 93 7 0 chr13 33035919 33036209 -86708689 - AluSq SINE Alu -21 292 1 354 23 0 0 chr13 33036613 33036656 -86708242 + (CA)n Simple_repeat Simple_repeat 1 43 0 348 24 0 0 chr13 33036655 33036696 -86708202 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 257 271 86 76 chr13 33036775 33036985 -86707913 - MER102b DNA MER1_type -49 292 81 252 122 0 0 chr13 33037364 33037405 -86707493 + (TG)n Simple_repeat Simple_repeat 1 41 0 181 337 144 10 chr13 33037578 33037780 -86707118 - L2 LINE L2 -531 2783 2555 2128 132 0 0 chr13 33037976 33038272 -86706626 + AluSx SINE Alu 1 296 -16 1137 270 167 22 chr13 33038817 33039273 -86705625 - MLT1G1 LTR MaLR -1 594 73 390 301 66 88 chr13 33039572 33039798 -86705100 + L2 LINE L2 3045 3265 -7 279 312 76 27 chr13 33040691 33040883 -86704015 + MIR SINE MIR 6 208 -54 237 234 117 63 chr13 33040883 33040994 -86703904 + L2 LINE L2 3197 3313 0 227 259 0 17 chr13 33040995 33041053 -86703845 + MIR SINE MIR 204 260 -2 201 304 11 22 chr13 33041060 33041152 -86703746 + (TAG)n Simple_repeat Simple_repeat 1 91 0 1041 153 119 84 chr13 33041897 33042186 -86702712 - MER57A LTR ERV1 0 403 111 1876 140 0 4 chr13 33042194 33042497 -86702401 + AluSx SINE Alu 15 316 0 1760 319 15 33 chr13 33042764 33042912 -86701986 - MER57-int LTR ERV1 -588 6949 6800 1874 179 55 0 chr13 33042912 33043242 -86701656 + MER7A DNA MER2_type 1 346 0 1760 319 15 33 chr13 33043242 33043824 -86701074 - MER57-int LTR ERV1 -737 6800 6232 2307 51 0 20 chr13 33044257 33044553 -86700345 + AluY SINE Alu 1 290 -21 233 29 29 0 chr13 33044553 33044587 -86700311 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 893 271 73 84 chr13 33044802 33045428 -86699470 - MER57-int LTR ERV1 -780 6207 3930 3229 221 72 96 chr13 33045578 33046807 -86698091 - MER57-int LTR ERV1 -1716 5821 4623 2027 98 0 41 chr13 33046807 33047127 -86697771 + AluSc SINE Alu 1 308 0 3229 221 72 96 chr13 33047127 33047216 -86697682 - MER57-int LTR ERV1 -2914 4623 4533 423 223 62 46 chr13 33047422 33047552 -86697346 - MER57-int LTR ERV1 -7291 246 115 1713 165 0 7 chr13 33047621 33047912 -86696986 - AluSg SINE Alu -8 302 14 31 26 0 0 chr13 33048210 33048248 -86696650 + AT_rich Low_complexity Low_complexity 1 38 0 379 308 0 0 chr13 33048617 33048750 -86696148 + (TA)n Simple_repeat Simple_repeat 2 134 0 439 243 33 59 chr13 33050139 33050220 -86694678 - MIR SINE MIR -112 150 73 1863 174 0 10 chr13 33050220 33050519 -86694379 - AluSx SINE Alu -16 296 1 439 243 33 59 chr13 33050519 33050589 -86694309 - MIR SINE MIR -189 73 3 2798 10 0 7 chr13 33051182 33051489 -86693409 - AluY SINE Alu -6 305 1 233 245 0 0 chr13 33052039 33052092 -86692806 - L2 LINE L2 -4 3309 3257 2381 89 3 0 chr13 33053533 33053837 -86691061 + AluY SINE Alu 1 305 -6 255 212 35 88 chr13 33053980 33054055 -86690843 + MIR SINE MIR 130 199 -63 2150 246 25 14 chr13 33054055 33054567 -86690331 - LTR40a LTR ERVL 0 519 2 255 212 35 88 chr13 33054567 33054604 -86690294 + MIR SINE MIR 199 236 -26 2265 115 0 0 chr13 33055417 33055722 -86689176 - AluSx SINE Alu -7 305 1 359 225 166 0 chr13 33055954 33056092 -86688806 - MER5A DNA MER1_type -20 158 4 2347 93 0 0 chr13 33057832 33058132 -86686766 + AluSx SINE Alu 1 300 -12 2415 59 0 29 chr13 33058134 33058440 -86686458 + AluY SINE Alu 3 299 -12 245 109 22 0 chr13 33059204 33059250 -86685648 + (TG)n Simple_repeat Simple_repeat 1 47 0 624 276 126 0 chr13 33059404 33059578 -86685320 + MIR SINE MIR 18 213 -49 267 321 92 18 chr13 33059826 33059935 -86684963 - MIR SINE MIR -126 136 20 29 0 0 0 chr13 33059952 33059981 -86684917 + AT_rich Low_complexity Low_complexity 1 29 0 427 296 70 28 chr13 33060800 33060942 -86683956 + L2 LINE L2 3125 3272 0 619 280 62 36 chr13 33061083 33061390 -86683508 - MER102b DNA MER1_type 0 341 27 225 213 131 0 chr13 33061421 33061482 -86683416 - MIR SINE MIR -142 120 52 205 88 29 0 chr13 33061512 33061546 -86683352 + (TA)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr13 33061557 33061585 -86683313 + AT_rich Low_complexity Low_complexity 1 28 0 1594 55 10 30 chr13 33061738 33061939 -86682959 - MER107 DNA MER1_type 0 197 1 377 225 11 34 chr13 33062057 33062146 -86682752 - MIR SINE MIR -171 91 5 1997 120 28 0 chr13 33062275 33062558 -86682340 + AluSg SINE Alu 1 291 -19 617 179 11 17 chr13 33062580 33062759 -86682139 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 665 171 23 0 chr13 33062794 33062969 -86681929 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 180 0 0 0 chr13 33063011 33063031 -86681867 + (CCA)n Simple_repeat Simple_repeat 1 20 0 219 307 0 0 chr13 33063300 33063437 -86681461 + (TG)n Simple_repeat Simple_repeat 2 138 0 371 245 133 117 chr13 33063778 33064162 -86680736 + LTR33 LTR ERVL 82 471 -50 206 100 0 50 chr13 33065151 33065191 -86679707 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 1122 85 13 0 chr13 33066335 33066488 -86678410 - L1PA14 LINE L1 -4 6157 6003 374 275 25 25 chr13 33069277 33069397 -86675501 - MIR SINE MIR 0 262 143 239 346 0 66 chr13 33069396 33069578 -86675320 + L2 LINE L2 2342 2511 -803 * 262 255 98 0 chr13 33069620 33069722 -86675176 + L2 LINE L2 2809 2920 -352 598 348 68 20 chr13 33069770 33070162 -86674736 + L2 LINE L2 2577 2996 -317 292 270 90 36 chr13 33070532 33070643 -86674255 - MIR SINE MIR -123 139 23 1902 173 28 30 chr13 33071069 33071627 -86673271 + MLT2A2 LTR ERVL 2 554 0 387 113 0 0 chr13 33072617 33072679 -86672219 + (CA)n Simple_repeat Simple_repeat 1 62 0 2246 165 24 14 chr13 33073243 33073668 -86671230 + MSTB1 LTR MaLR 1 429 -3 30 69 0 0 chr13 33074693 33074751 -86670147 + AT_rich Low_complexity Low_complexity 1 58 0 2122 84 44 3 chr13 33075394 33075691 -86669207 - L1PB1 LINE L1 0 6151 5843 321 259 6 18 chr13 33076361 33076527 -86668371 + CT-rich Low_complexity Low_complexity 1 164 0 255 367 115 0 chr13 33079178 33079317 -86665581 + L2 LINE L2 2828 2982 -331 1793 185 33 14 chr13 33079358 33079726 -86665172 + THE1C LTR MaLR 1 375 0 9083 131 13 33 chr13 33079732 33081317 -86663581 + THE1C-int LTR MaLR 27 1580 0 2108 146 30 19 chr13 33081317 33081688 -86663210 + THE1C LTR MaLR 1 375 0 187 213 106 0 chr13 33081688 33081735 -86663163 + L2 LINE L2 3011 3062 -251 308 313 97 7 chr13 33082762 33082906 -86661992 + MIR SINE MIR 57 213 -49 236 227 0 0 chr13 33083112 33083156 -86661742 - LTR33 LTR ERVL 0 521 478 804 216 22 5 chr13 33083405 33083590 -86661308 - MER5A DNA MER1_type 0 189 2 3053 164 44 81 chr13 33084103 33084611 -86660287 + L1MC3 LINE L1 6968 7434 -351 1744 129 3 96 chr13 33084611 33084725 -86660173 + AluSx SINE Alu 2 125 -177 228 35 0 0 chr13 33084725 33084754 -86660144 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1744 129 3 96 chr13 33084754 33084971 -86659927 + AluSx SINE Alu 125 302 0 3053 164 44 81 chr13 33084971 33085303 -86659595 + L1MC3 LINE L1 7434 7777 -8 390 21 0 0 chr13 33086267 33086314 -86658584 + (CA)n Simple_repeat Simple_repeat 1 47 0 263 348 107 30 chr13 33086429 33086728 -86658170 - L2 LINE L2 -680 2634 2313 318 146 0 0 chr13 33087028 33087076 -86657822 + L2 LINE L2 3266 3313 0 1985 133 75 20 chr13 33087413 33087758 -86657140 - THE1B LTR MaLR 0 364 1 222 204 20 0 chr13 33089105 33089154 -86655744 - L2 LINE L2 -13 3259 3210 640 283 128 5 chr13 33091237 33091470 -86653428 + MIR SINE MIR 8 248 -14 255 203 0 0 chr13 33094070 33094134 -86650764 + GA-rich Low_complexity Low_complexity 1 64 0 22 56 0 0 chr13 33094780 33094816 -86650082 + AT_rich Low_complexity Low_complexity 1 36 0 328 200 300 9 chr13 33095038 33095148 -86649750 - MIR SINE MIR -33 229 88 334 265 27 7 chr13 33095234 33095381 -86649517 + L1MC/D LINE L1 4456 4605 -1541 967 331 82 39 chr13 33096101 33096614 -86648284 + L2 LINE L2 1326 1860 -1454 820 92 9 0 chr13 33096621 33096730 -86648168 + AluSg/x SINE Alu 189 298 -11 273 303 71 0 chr13 33096732 33096831 -86648067 + L2 LINE L2 1854 1959 -1355 200 208 146 0 chr13 33096994 33097042 -86647856 - MIR SINE MIR -4 258 204 * 1220 284 186 46 chr13 33097025 33098174 -86646724 + L2 LINE L2 1991 3313 0 565 273 103 39 chr13 33098182 33098719 -86646179 + L1MC/D LINE L1 5197 5761 -409 23 33 0 0 chr13 33098774 33098804 -86646094 + AT_rich Low_complexity Low_complexity 1 30 0 1548 265 53 14 chr13 33098928 33099441 -86645457 - MLT1H1 LTR MaLR -6 549 17 198 351 38 8 chr13 33099606 33099737 -86645161 - L2 LINE L2 -1004 2310 2176 36 40 0 0 chr13 33100236 33100286 -86644612 + AT_rich Low_complexity Low_complexity 1 50 0 2311 75 3 47 chr13 33100485 33100806 -86644092 - AluY SINE Alu -4 307 1 378 310 46 56 chr13 33100860 33101189 -86643709 - L1ME3A LINE L1 -214 5956 5629 408 300 125 21 chr13 33101229 33101556 -86643342 - MLT1L LTR MaLR -52 563 203 334 292 33 2 chr13 33101752 33101925 -86642973 - L1ME3A LINE L1 -561 5601 5423 375 306 99 17 chr13 33101934 33102166 -86642732 - L1ME3A LINE L1 -756 5390 5140 691 278 15 93 chr13 33102348 33102618 -86642280 - MIR SINE MIR -13 249 1 228 277 0 0 chr13 33102821 33102868 -86642030 + polypyrimidine Low_complexity Low_complexity 4 50 0 230 363 44 26 chr13 33104326 33104439 -86640459 - L2 LINE L2 -36 3236 3122 2540 71 3 0 chr13 33105524 33105834 -86639064 - AluY SINE Alu 0 311 1 5709 89 3 44 chr13 33109111 33110025 -86634873 - L1PA11 LINE L1 -14 6160 5284 378 316 44 13 chr13 33110099 33110257 -86634641 - MIR SINE MIR 0 262 100 234 292 80 24 chr13 33110380 33110630 -86634268 + L1ME LINE L1 4342 4605 -1541 232 335 92 38 chr13 33110803 33111042 -86633856 - L2 LINE L2 -2607 707 456 24 0 0 0 chr13 33111092 33111116 -86633782 + AT_rich Low_complexity Low_complexity 1 24 0 462 329 59 29 chr13 33111232 33111797 -86633101 + L1ME LINE L1 4904 5545 -576 1748 166 13 23 chr13 33112022 33112323 -86632575 - AluJb SINE Alu -10 302 5 1686 148 3 42 chr13 33112638 33112779 -86632119 + AluSx SINE Alu 1 127 -185 2098 134 20 0 chr13 33112779 33113085 -86631813 + AluSx SINE Alu 1 312 0 1686 148 3 42 chr13 33113085 33113227 -86631671 + AluSx SINE Alu 127 273 -39 861 40 32 8 chr13 33113231 33113356 -86631542 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 26 30 0 0 chr13 33114344 33114377 -86630521 + AT_rich Low_complexity Low_complexity 1 33 0 466 277 95 92 chr13 33115159 33115484 -86629414 - L2 LINE L2 -1 3312 2987 439 304 51 42 chr13 33117039 33117205 -86627693 + MIR SINE MIR 44 214 -48 2341 124 91 8 chr13 33117205 33117600 -86627298 - MSTA LTR MaLR 0 428 1 439 304 51 42 chr13 33117600 33117650 -86627248 + MIR SINE MIR 214 262 0 200 288 75 62 chr13 33117662 33117742 -86627156 - L2 LINE L2 -25 3288 3208 389 354 78 0 chr13 33119268 33119460 -86625438 + MIR SINE MIR 41 247 -15 5813 144 73 6 chr13 33120317 33120675 -86624223 - L1PBa LINE L1 -3303 3559 3226 396 55 0 0 chr13 33120675 33120730 -86624168 + (TA)n Simple_repeat Simple_repeat 2 56 0 5813 144 73 6 chr13 33120730 33121942 -86622956 - L1PBa LINE L1 -3636 3226 1876 3198 156 7 31 chr13 33121943 33123070 -86621828 + L1PB1 LINE L1 4679 5791 -360 490 147 8 31 chr13 33123070 33123199 -86621699 + (TA)n Simple_repeat Simple_repeat 1 126 0 2327 101 14 20 chr13 33123199 33123554 -86621344 + L1PB1 LINE L1 5782 6134 -17 300 299 41 10 chr13 33124867 33124964 -86619934 + L2 LINE L2 3208 3307 -6 197 311 0 0 chr13 33125329 33125374 -86619524 + L2 LINE L2 3255 3299 -14 505 250 8 23 chr13 33126134 33126262 -86618636 + MIR SINE MIR 66 191 -71 1895 161 49 14 chr13 33126293 33126642 -86618256 - MLT1A1 LTR MaLR -2 363 3 281 293 38 45 chr13 33126793 33126926 -86617972 + L2 LINE L2 2439 2570 -744 269 276 109 13 chr13 33129925 33130081 -86614817 - ERVL LTR ERVL -335 5429 5259 467 313 108 11 chr13 33130309 33130577 -86614321 - ERVL LTR ERVL -2462 3302 3009 495 334 72 20 chr13 33130926 33131231 -86613667 - ERVL LTR ERVL -3163 2491 2171 3084 155 44 24 chr13 33131233 33131799 -86613099 + L1MB7 LINE L1 5280 5862 -322 2129 135 3 0 chr13 33131799 33132102 -86612796 + AluSx SINE Alu 1 304 -8 3084 155 44 24 chr13 33132102 33132169 -86612729 + L1MB7 LINE L1 5862 5926 -258 1745 313 50 13 chr13 33132147 33132840 -86612058 - L1MEc LINE L1 -5646 750 32 * 3344 269 48 54 chr13 33132837 33133801 -86611097 - L1MEc LINE L1 -1336 4879 3911 2339 109 0 0 chr13 33133801 33134114 -86610784 - AluSq SINE Alu 0 313 1 3344 269 48 54 chr13 33134114 33135908 -86608990 - L1MEc LINE L1 -2304 3911 2108 1717 142 15 4 chr13 33135908 33136176 -86608722 - AluSx SINE Alu -3 309 39 3344 269 48 54 chr13 33136176 33137544 -86607354 - L1MEc LINE L1 -4107 2108 288 246 83 333 0 chr13 33137552 33137600 -86607298 - L1M1 LINE L1 -5601 1964 1901 497 306 8 0 chr13 33137695 33137819 -86607079 - L2 LINE L2 0 3313 3189 13979 176 52 22 chr13 33139457 33142067 -86602831 + L1MA4A LINE L1 17 2704 -4861 10631 181 36 23 chr13 33142060 33145194 -86599704 + L1MA4A LINE L1 4462 7637 -85 * 2951 153 56 52 chr13 33145194 33145804 -86599094 + LTR9 LTR ERV1 1 612 0 10631 181 36 23 chr13 33145804 33145864 -86599034 + L1MA4A LINE L1 7637 7695 -27 22 0 0 0 chr13 33145878 33145900 -86598998 + AT_rich Low_complexity Low_complexity 1 22 0 2338 70 37 0 chr13 33145950 33146250 -86598648 + AluY SINE Alu 1 311 0 224 363 44 26 chr13 33147335 33147448 -86597450 + L2 LINE L2 3122 3236 -36 228 277 0 0 chr13 33148904 33148951 -86595947 + polypurine Low_complexity Low_complexity 4 50 0 693 278 15 93 chr13 33149154 33149424 -86595474 + MIR SINE MIR 1 249 -13 349 275 133 24 chr13 33149606 33150020 -86594878 + L1ME LINE L1 5140 5601 -561 513 300 125 21 chr13 33150216 33150543 -86594355 + MLT1L LTR MaLR 203 563 -52 241 326 38 8 chr13 33150635 33150767 -86594131 + L1ME LINE L1 5685 5820 -350 2297 75 3 47 chr13 33150966 33151287 -86593611 + AluY SINE Alu 1 307 -4 36 40 0 0 chr13 33151486 33151536 -86593362 + AT_rich Low_complexity Low_complexity 1 50 0 194 351 38 8 chr13 33152035 33152166 -86592732 + L2 LINE L2 2176 2310 -1004 1699 267 53 14 chr13 33152331 33152844 -86592054 + MLT1H1 LTR MaLR 17 549 -6 24 32 0 0 chr13 33152968 33152999 -86591899 + AT_rich Low_complexity Low_complexity 1 31 0 670 273 97 39 chr13 33153054 33153591 -86591307 - L1ME LINE L1 -409 5761 5197 1173 284 186 46 chr13 33153599 33154748 -86590150 - L2 LINE L2 0 3313 1991 202 208 146 0 chr13 33154731 33154779 -86590119 + MIR SINE MIR 204 258 -4 * 269 313 71 0 chr13 33154942 33155041 -86589857 - L2 LINE L2 -1355 1959 1854 811 92 9 0 chr13 33155043 33155152 -86589746 - AluSg/x SINE Alu -11 298 189 1055 313 80 41 chr13 33155159 33155674 -86589224 - L2 LINE L2 -1454 1860 1326 370 265 27 7 chr13 33156394 33156541 -86588357 - L1ME LINE L1 -1541 4605 4456 331 200 300 9 chr13 33156627 33156737 -86588161 + MIR SINE MIR 88 229 -33 22 56 0 0 chr13 33156959 33156995 -86587903 + AT_rich Low_complexity Low_complexity 1 36 0 327 181 0 0 chr13 33157644 33157716 -86587182 + CT-rich Low_complexity Low_complexity 1 72 0 630 266 132 9 chr13 33160316 33160549 -86584349 - MIR SINE MIR -14 248 8 220 204 20 0 chr13 33162632 33162681 -86582217 + L2 LINE L2 3210 3259 -13 1979 133 75 20 chr13 33164032 33164377 -86580521 + THE1B LTR MaLR 1 364 0 319 146 0 0 chr13 33164714 33164762 -86580136 - L2 LINE L2 0 3313 3266 268 307 131 30 chr13 33165062 33165361 -86579537 + L2 LINE L2 2313 2634 -680 390 21 0 0 chr13 33165476 33165523 -86579375 + (TG)n Simple_repeat Simple_repeat 1 47 0 3393 164 44 82 chr13 33166487 33166819 -86578079 - L1MC3 LINE L1 -8 7777 7434 1887 127 3 96 chr13 33166819 33167036 -86577862 - AluSx SINE Alu 0 302 125 228 35 0 0 chr13 33167036 33167065 -86577833 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1887 127 3 96 chr13 33167065 33167179 -86577719 - AluSx SINE Alu -177 125 2 3393 164 44 82 chr13 33167179 33167680 -86577218 - L1MC3 LINE L1 -351 7434 6975 233 259 19 0 chr13 33167680 33167734 -86577164 + LTR64 LTR ERVK 423 477 -81 903 211 22 5 chr13 33168200 33168385 -86576513 + MER5A DNA MER1_type 2 189 0 258 309 122 8 chr13 33168555 33168678 -86576220 + LTR33 LTR ERVL 385 521 0 294 313 97 7 chr13 33168884 33169028 -86575870 - MIR SINE MIR -49 213 57 183 213 106 0 chr13 33170055 33170102 -86574796 - L2 LINE L2 -251 3062 3011 2281 146 30 19 chr13 33170102 33170473 -86574425 - THE1C LTR MaLR 0 375 1 9881 130 12 33 chr13 33170473 33172060 -86572838 - THE1C-int LTR MaLR 0 1580 27 1959 185 33 14 chr13 33172066 33172434 -86572464 - THE1C LTR MaLR 0 375 1 250 367 115 0 chr13 33172475 33172614 -86572284 - L2 LINE L2 -331 2982 2828 321 259 6 18 chr13 33175265 33175431 -86569467 + GA-rich Low_complexity Low_complexity 1 164 0 2282 84 44 3 chr13 33176101 33176398 -86568500 + L1PB1 LINE L1 5843 6151 0 30 69 0 0 chr13 33177041 33177099 -86567799 + AT_rich Low_complexity Low_complexity 1 58 0 2468 165 24 12 chr13 33178124 33178548 -86566350 - MSTB1 LTR MaLR -3 429 1 333 125 0 0 chr13 33179111 33179167 -86565731 + (TG)n Simple_repeat Simple_repeat 1 56 0 2046 173 28 30 chr13 33180157 33180715 -86564183 - MLT2A2 LTR ERVL 0 554 2 287 270 90 36 chr13 33181141 33181252 -86563646 + MIR SINE MIR 23 139 -123 577 332 76 28 chr13 33181622 33182014 -86562884 - L2 LINE L2 -317 2996 2577 260 274 98 0 chr13 33182062 33182164 -86562734 - L2 LINE L2 -352 2920 2809 229 346 0 66 chr13 33182206 33182388 -86562510 - L2 LINE L2 -803 2511 2342 * 361 275 25 25 chr13 33182387 33182507 -86562391 + MIR SINE MIR 143 262 0 1189 92 13 0 chr13 33185296 33185449 -86559449 + L1PA14 LINE L1 6003 6157 -4 183 42 0 0 chr13 33186592 33186616 -86558282 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 498 240 133 117 chr13 33187623 33188007 -86556891 - LTR33 LTR ERVL -50 471 82 219 307 0 0 chr13 33188348 33188485 -86556413 + (CA)n Simple_repeat Simple_repeat 2 138 0 180 0 0 0 chr13 33188754 33188774 -86556124 + (TGG)n Simple_repeat Simple_repeat 1 20 0 665 171 23 0 chr13 33188816 33188991 -86555907 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 617 179 11 17 chr13 33189026 33189205 -86555693 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 1997 120 28 0 chr13 33189227 33189510 -86555388 - AluSg SINE Alu -19 291 1 377 225 11 34 chr13 33189639 33189728 -86555170 + MIR SINE MIR 5 91 -171 1594 55 10 30 chr13 33189846 33190047 -86554851 + MER107 DNA MER1_type 1 197 0 36 70 0 0 chr13 33190200 33190271 -86554627 + AT_rich Low_complexity Low_complexity 1 71 0 225 213 131 0 chr13 33190301 33190362 -86554536 + MIR SINE MIR 52 120 -142 666 283 58 36 chr13 33190393 33190701 -86554197 + MER102b DNA MER1_type 27 341 0 427 296 70 28 chr13 33190842 33190984 -86553914 - L2 LINE L2 0 3272 3125 29 0 0 0 chr13 33191803 33191832 -86553066 + AT_rich Low_complexity Low_complexity 1 29 0 256 314 132 16 chr13 33191837 33191958 -86552940 + MIR SINE MIR 2 136 -126 624 276 126 0 chr13 33192206 33192380 -86552518 - MIR SINE MIR -49 213 18 263 104 21 0 chr13 33192534 33192582 -86552316 + (CA)n Simple_repeat Simple_repeat 1 49 0 2416 62 0 23 chr13 33193346 33193650 -86551248 - AluY SINE Alu -12 299 3 2275 98 0 0 chr13 33193652 33193948 -86550950 - AluSx SINE Alu -16 296 1 346 270 30 0 chr13 33195688 33195788 -86549110 + MER5A DNA MER1_type 4 106 -83 2291 112 0 0 chr13 33196057 33196362 -86548536 + AluSx SINE Alu 1 305 -7 243 221 35 88 chr13 33197175 33197212 -86547686 - MIR SINE MIR -26 236 199 2188 242 25 14 chr13 33197212 33197724 -86547174 + LTR40a LTR ERVL 2 519 0 243 221 35 88 chr13 33197724 33197799 -86547099 - MIR SINE MIR -63 199 130 2364 89 3 0 chr13 33197942 33198244 -86546654 - AluY SINE Alu -8 303 1 233 245 0 0 chr13 33199685 33199738 -86545160 + L2 LINE L2 3257 3309 -4 2885 10 0 0 chr13 33200288 33200598 -86544300 + AluY SINE Alu 1 310 -1 439 243 33 59 chr13 33201200 33201270 -86543628 + MIR SINE MIR 3 73 -189 1866 174 0 10 chr13 33201270 33201568 -86543330 + AluSx SINE Alu 1 295 -17 439 243 33 59 chr13 33201568 33201649 -86543249 + MIR SINE MIR 73 150 -112 379 308 0 0 chr13 33203038 33203171 -86541727 + (TA)n Simple_repeat Simple_repeat 1 133 0 3036 76 0 109 chr13 33204327 33204549 -86540349 + L1PA7 LINE L1 5684 5826 -328 7875 36 6 0 chr13 33204549 33205968 -86538930 + L1PA5 LINE L1 4725 6148 -6 3036 76 0 109 chr13 33205968 33206232 -86538666 + L1PA7 LINE L1 5826 6117 -37 322 299 62 10 chr13 33207598 33207695 -86537203 + MIR SINE MIR 6 107 -155 675 250 13 14 chr13 33207714 33207880 -86537018 + MLT1J2 LTR MaLR 24 218 -270 393 284 134 35 chr13 33208006 33208207 -86536691 + MLT1J2 LTR MaLR 227 447 -3 25 0 0 0 chr13 33208322 33208347 -86536551 + AT_rich Low_complexity Low_complexity 1 25 0 198 71 0 0 chr13 33208362 33208390 -86536508 + (TC)n Simple_repeat Simple_repeat 1 28 0 306 261 59 34 chr13 33208514 33208633 -86536265 + MIR SINE MIR 71 192 -70 2284 200 37 24 chr13 33209496 33210035 -86534863 + L1MD3 LINE L1 7450 7995 0 63 67 0 0 chr13 33210066 33210185 -86534713 + AT_rich Low_complexity Low_complexity 1 119 0 322 295 92 70 chr13 33211224 33211410 -86533488 + HAL1b LINE L1 59 239 -1109 1887 118 0 11 chr13 33211410 33211681 -86533217 + AluSx SINE Alu 40 307 -5 322 295 92 70 chr13 33211681 33212131 -86532767 + HAL1b LINE L1 239 715 -633 1989 140 27 0 chr13 33212131 33212424 -86532474 + AluSx SINE Alu 1 301 -11 322 295 92 70 chr13 33212424 33212512 -86532386 + HAL1b LINE L1 715 800 -548 1304 233 107 49 chr13 33212701 33213404 -86531494 + L1MC5 LINE L1 6529 7281 -680 538 250 47 8 chr13 33213435 33213563 -86531335 + MLT1D LTR MaLR 1 133 -372 295 217 72 0 chr13 33213563 33213646 -86531252 - L2 LINE L2 -2407 907 819 423 218 0 0 chr13 33213648 33213735 -86531163 + MER105 DNA DNA 2 88 -116 197 331 68 53 chr13 33214364 33214497 -86530401 - L2 LINE L2 -15 3257 3123 250 270 220 0 chr13 33215666 33215766 -86529132 - MIR SINE MIR -85 177 56 27 0 0 0 chr13 33215907 33215934 -86528964 + AT_rich Low_complexity Low_complexity 1 27 0 617 235 99 38 chr13 33216615 33216828 -86528070 + MIR SINE MIR 35 260 -2 312 335 31 43 chr13 33217336 33217497 -86527401 - L2 LINE L2 -9 3263 3105 1763 162 4 0 chr13 33217719 33217990 -86526908 + AluSx SINE Alu 6 277 -35 252 276 143 51 chr13 33218142 33218240 -86526658 + MIR SINE MIR 16 122 -86 210 143 0 0 chr13 33219812 33219847 -86525051 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 285 343 48 113 chr13 33220086 33220485 -86524413 - L2 LINE L2 -6 3266 2894 2110 109 3 3 chr13 33221077 33221397 -86523501 + AluSx SINE Alu 1 320 0 362 252 76 34 chr13 33221939 33222058 -86522840 - MIR SINE MIR -72 190 67 388 289 103 33 chr13 33223821 33224063 -86520835 + LTR33 LTR ERVL 178 436 -85 386 19 0 19 chr13 33224063 33224115 -86520783 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 7480 34 0 0 chr13 33224115 33225047 -86519851 - L1PA4 LINE L1 -11 6144 5213 6920 35 6 0 chr13 33225047 33225943 -86518955 + L1P LINE L1 2788 3688 -2458 339 198 12 12 chr13 33225943 33226029 -86518869 + LTR33 LTR ERVL 421 506 -15 235 303 40 10 chr13 33227894 33227993 -86516905 - MIR3 SINE MIR -24 184 83 277 266 14 173 chr13 33228030 33228174 -86516724 + MER5A DNA MER1_type 9 110 -79 2269 102 0 0 chr13 33228174 33228468 -86516430 - AluSg SINE Alu -16 294 1 277 266 14 173 chr13 33228468 33228537 -86516361 + MER5A DNA MER1_type 110 188 -1 1679 192 0 10 chr13 33229055 33229347 -86515551 - AluJo SINE Alu -13 299 11 1509 246 79 78 chr13 33229403 33230116 -86514782 - MER21B LTR ERV1 -125 738 22 351 18 54 0 chr13 33230116 33230172 -86514726 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 222 396 88 11 chr13 33230597 33230688 -86514210 + L2 LINE L2 3147 3244 -28 2452 75 0 3 chr13 33230698 33231003 -86513895 - AluY SINE Alu -7 304 1 24 0 0 0 chr13 33231208 33231232 -86513666 + AT_rich Low_complexity Low_complexity 1 24 0 369 319 28 14 chr13 33231768 33231912 -86512986 - MIR SINE MIR -5 257 112 31 0 0 0 chr13 33232258 33232289 -86512609 + AT_rich Low_complexity Low_complexity 1 31 0 355 246 73 48 chr13 33232317 33232565 -86512333 + L1ME LINE L1 2158 2411 -3985 3109 261 27 37 chr13 33232583 33234555 -86510343 + L1MA6 LINE L1 16 1951 -4098 3983 207 86 7 chr13 33234565 33235774 -86509124 + L1MA6 LINE L1 2440 3743 -2585 684 185 0 0 chr13 33235809 33235928 -86508970 + AluSg/x SINE Alu 183 301 -9 4874 26 2 0 chr13 33236111 33236681 -86508217 - L1PA4 LINE L1 -3 6152 5582 6563 166 37 35 chr13 33236683 33238175 -86506723 + L1MA6 LINE L1 3735 5228 -1100 4110 164 90 18 chr13 33238165 33239129 -86505769 + L1MA6 LINE L1 5449 6482 0 * 1991 276 65 45 chr13 33239227 33240708 -86504190 + L1ME LINE L1 2495 4004 -2211 2336 89 3 6 chr13 33240731 33241045 -86503853 - AluSp SINE Alu 0 313 1 25 0 0 0 chr13 33241101 33241126 -86503772 + AT_rich Low_complexity Low_complexity 1 25 0 239 299 6 19 chr13 33241259 33241416 -86503482 + L1ME LINE L1 4181 4335 -1880 229 100 25 0 chr13 33241418 33241458 -86503440 - MADE1 DNA Mariner -5 75 35 1259 258 80 6 chr13 33241589 33242090 -86502808 + L1ME LINE L1 4875 5412 -803 305 300 11 0 chr13 33242117 33242207 -86502691 - L1MC4 LINE L1 -1339 6703 6613 212 158 0 0 chr13 33242224 33242262 -86502636 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 873 269 26 16 chr13 33242271 33242579 -86502319 + L1ME LINE L1 5464 5774 -457 1376 315 71 41 chr13 33242580 33243628 -86501270 - HERV16 LTR ERVL -1904 3860 2711 1308 317 26 16 chr13 33243694 33244311 -86500587 - HERV16 LTR ERVL -2588 2408 1914 2011 164 45 32 chr13 33244364 33244871 -86500027 + MLT2A2 LTR ERVL 1 520 0 1912 310 71 13 chr13 33244871 33246009 -86498889 - HERV16 LTR ERVL -3124 1872 604 425 355 47 14 chr13 33246268 33246564 -86498334 - HERV16 LTR ERVL -4676 320 15 752 316 33 28 chr13 33246566 33246961 -86497937 - LTR16B LTR ERVL -2 462 66 1866 136 23 0 chr13 33249675 33249977 -86494921 - MER7A DNA MER2_type 0 346 40 526 286 79 31 chr13 33251450 33251677 -86493221 + MIR SINE MIR 20 257 -5 321 68 0 0 chr13 33252925 33252969 -86491929 + (TG)n Simple_repeat Simple_repeat 1 44 0 2132 138 0 0 chr13 33254115 33254426 -86490472 + AluSx SINE Alu 1 311 -1 221 196 18 0 chr13 33254454 33254510 -86490388 + (TA)n Simple_repeat Simple_repeat 1 57 0 1978 205 94 14 chr13 33254716 33255218 -86489680 - MLT1F LTR MaLR 0 542 1 192 111 0 0 chr13 33255292 33255328 -86489570 + (A)n Simple_repeat Simple_repeat 1 36 0 1448 143 9 5 chr13 33258096 33258319 -86486579 + AluSx SINE Alu 1 224 -88 180 0 0 0 chr13 33258330 33258350 -86486548 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1090 207 132 35 chr13 33258355 33258756 -86486142 - MLT1C LTR MaLR -27 440 1 995 200 45 76 chr13 33259058 33259582 -86485316 + MER34B LTR ERV1 4 585 0 287 273 172 50 chr13 33260301 33260499 -86484399 + MIR SINE MIR 3 224 -38 182 273 55 82 chr13 33260553 33260663 -86484235 - MIR SINE MIR -147 115 9 209 327 77 39 chr13 33260999 33261103 -86483795 - L2 LINE L2 -32 3240 3133 778 213 24 0 chr13 33261424 33261588 -86483310 - MER5A DNA MER1_type -5 184 17 1767 130 70 12 chr13 33261588 33261918 -86482980 - THE1C LTR MaLR 0 375 27 1315 187 101 1 chr13 33264445 33264796 -86480102 - MLT2C2 LTR ERVL 0 397 3 2070 113 7 29 chr13 33264823 33265133 -86479765 + AluSq SINE Alu 11 313 0 21 36 0 0 chr13 33265334 33265362 -86479536 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 33265406 33265432 -86479466 + AT_rich Low_complexity Low_complexity 1 26 0 627 278 46 85 chr13 33265447 33266012 -86478886 + L1ME LINE L1 13 555 -5515 1793 215 61 8 chr13 33266486 33266960 -86477938 - Charlie1b DNA MER1_type -1 522 24 560 329 82 16 chr13 33267110 33267426 -86477472 - ERVL LTR ERVL -1914 3850 3514 438 324 42 14 chr13 33267509 33267725 -86477173 - ERVL LTR ERVL -2375 3389 3168 312 333 33 18 chr13 33267766 33267979 -86476919 - ERVL LTR ERVL -1981 3015 2788 362 235 42 48 chr13 33267979 33268134 -86476764 - MLT1F LTR MaLR 0 555 388 238 329 27 67 chr13 33268264 33268337 -86476561 - MLT1F LTR MaLR -362 228 162 2854 82 0 6 chr13 33268337 33268703 -86476195 + THE1B LTR MaLR 1 364 0 238 329 27 67 chr13 33268703 33268778 -86476120 - MLT1F LTR MaLR -428 162 86 410 325 21 16 chr13 33269269 33269463 -86475435 - ERVL LTR ERVL -3427 2337 2143 440 207 33 50 chr13 33269520 33269641 -86475257 - MLT1F LTR MaLR -8 534 416 232 284 23 0 chr13 33271216 33271304 -86473594 + (TA)n Simple_repeat Simple_repeat 2 91 0 736 246 77 40 chr13 33272768 33273016 -86471882 - MIR SINE MIR 0 262 6 38 22 0 0 chr13 33273399 33273444 -86471454 + AT_rich Low_complexity Low_complexity 1 45 0 216 0 0 0 chr13 33276090 33276114 -86468784 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1248 237 58 40 chr13 33276336 33276783 -86468115 - MLT1C LTR MaLR -7 460 6 2725 217 103 23 chr13 33276950 33276991 -86467907 - MER21B LTR ERV1 -15 848 812 2271 82 11 61 chr13 33276991 33277368 -86467530 - L1PB2 LINE L1 0 6151 5794 2725 217 103 23 chr13 33277368 33278096 -86466802 - MER21B LTR ERV1 -51 812 18 410 224 0 0 chr13 33278120 33278196 -86466702 - MER21B LTR ERV1 -776 87 12 527 321 75 25 chr13 33278392 33278672 -86466226 + HAL1 LINE L1 1134 1427 -1080 354 104 15 0 chr13 33278678 33278729 -86466169 + L1PA4 LINE L1 5983 6037 -118 428 105 0 105 chr13 33278729 33278824 -86466074 + L1PA10 LINE L1 6084 6168 0 354 104 15 0 chr13 33278824 33278839 -86466059 + L1PA4 LINE L1 6037 6050 -105 1175 234 127 15 chr13 33278966 33279487 -86465411 + MER114 LTR ERV 70 648 0 22 56 0 0 chr13 33279926 33279962 -86464936 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr13 33279980 33280003 -86464895 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 1724 195 0 16 chr13 33280003 33280311 -86464587 + AluJo SINE Alu 4 306 -6 1803 166 43 10 chr13 33284251 33284616 -86460282 + AluSx SINE Alu 1 375 0 327 236 22 22 chr13 33285438 33285527 -86459371 - MIR SINE MIR -117 145 57 508 315 76 0 chr13 33286451 33286635 -86458263 - MIR SINE MIR -8 254 57 847 255 172 45 chr13 33287595 33287991 -86456907 - L2 LINE L2 0 3313 2868 523 280 46 6 chr13 33288668 33288843 -86456055 + MIR SINE MIR 81 262 0 195 352 130 9 chr13 33288938 33289046 -86455852 - L2 LINE L2 -5 3267 3147 303 294 39 0 chr13 33289615 33289717 -86455181 - MLT1H LTR MaLR 0 549 444 384 240 157 30 chr13 33290418 33290605 -86454293 - MIR SINE MIR 0 262 59 2128 117 3 23 chr13 33291477 33291786 -86453112 + AluSg SINE Alu 1 303 -7 2225 76 10 10 chr13 33292647 33292938 -86451960 - AluY SINE Alu -20 291 1 182 233 0 67 chr13 33292982 33293042 -86451856 + L3 LINE CR1 1377 1432 -145 584 188 8 0 chr13 33293227 33293355 -86451543 + L1MB3 LINE L1 4992 5120 -1026 1041 144 26 0 chr13 33293376 33293570 -86451328 + L1MB3 LINE L1 5949 6147 -36 4415 177 14 13 chr13 33293625 33293867 -86451031 + L1MB3 LINE L1 5173 5413 -770 1856 115 118 38 chr13 33293867 33294214 -86450684 + THE1C LTR MaLR 1 375 0 4415 177 14 13 chr13 33294214 33294981 -86449917 + L1MB3 LINE L1 5413 6183 0 2122 152 0 0 chr13 33295046 33295349 -86449549 + AluSx SINE Alu 1 303 -9 1401 220 90 48 chr13 33295755 33296293 -86448605 + MLT1F1 LTR MaLR 1 567 0 727 263 157 27 chr13 33298433 33298764 -86446134 + L2 LINE L2 2940 3313 0 298 252 79 24 chr13 33299601 33299728 -86445170 + LTR16A1 LTR ERVL 321 454 -3 241 233 11 22 chr13 33299761 33299851 -86445047 + A-rich Low_complexity Low_complexity 3 91 0 1774 191 7 3 chr13 33300822 33301259 -86443639 + AluSx SINE Alu 1 438 0 1772 185 60 32 chr13 33303264 33303798 -86441100 + MLT2A2 LTR ERVL 1 554 0 427 175 62 21 chr13 33304142 33304239 -86440659 - L2 LINE L2 -4 3268 3168 1659 166 10 28 chr13 33305621 33305911 -86438987 + AluJb SINE Alu 16 300 -12 467 318 45 0 chr13 33306154 33306286 -86438612 - L2 LINE L2 0 3313 3176 404 256 103 0 chr13 33306302 33306419 -86438479 - MIR SINE MIR -45 217 89 251 299 0 15 chr13 33307800 33307867 -86437031 + MIR SINE MIR 32 97 -111 758 268 59 35 chr13 33308069 33308408 -86436490 + MLT1I LTR MaLR 63 409 0 186 324 75 104 chr13 33308836 33309250 -86435648 - L2 LINE L2 -38 3234 2833 1685 150 49 36 chr13 33309522 33309828 -86435070 + AluSg SINE Alu 1 310 0 1548 175 43 15 chr13 33310277 33310603 -86434295 - MER2 DNA MER2_type -9 336 2 2183 86 0 67 chr13 33310776 33311091 -86433807 - AluY SINE Alu -17 294 1 226 337 20 0 chr13 33311108 33311206 -86433692 + HAL1b LINE L1 798 897 -451 3528 56 11 0 chr13 33312863 33313313 -86431585 - L1PA7 LINE L1 0 6154 5700 244 341 69 81 chr13 33313547 33313808 -86431090 + L2 LINE L2 3008 3265 -7 195 301 36 24 chr13 33313810 33313893 -86431005 - MIR SINE MIR -67 141 58 543 191 80 19 chr13 33314122 33314284 -86430614 + MER53 DNA DNA 18 189 0 244 309 164 32 chr13 33314787 33315007 -86429891 + MIR SINE MIR 7 255 -7 288 0 0 0 chr13 33315566 33315598 -86429300 + (CA)n Simple_repeat Simple_repeat 1 32 0 447 251 57 43 chr13 33315717 33315928 -86428970 - L1MC/D LINE L1 -1992 5816 5603 280 248 168 0 chr13 33315936 33316037 -86428861 + MER69A DNA AcHobo 8 125 -52 880 249 169 26 chr13 33316436 33317007 -86427891 - L2 LINE L2 -1 3312 2662 39813 37 1 40 chr13 33317917 33324334 -86420564 - L1HS LINE L1 0 6155 1 282 56 0 0 chr13 33325216 33325252 -86419646 + (CA)n Simple_repeat Simple_repeat 2 37 0 2220 113 3 0 chr13 33326344 33326637 -86418261 + AluSx SINE Alu 1 294 -18 398 248 73 29 chr13 33326641 33326778 -86418120 - MIR SINE MIR -1 261 119 331 361 49 0 chr13 33326878 33327000 -86417898 - L2 LINE L2 -1 3271 3144 3428 206 6 57 chr13 33327356 33327749 -86417149 - L1MB5 LINE L1 -14 6160 5749 1984 115 0 11 chr13 33327749 33328018 -86416880 - AluSx SINE Alu -30 282 17 3428 206 6 57 chr13 33328018 33328508 -86416390 - L1MB5 LINE L1 -425 5749 5322 432 200 24 0 chr13 33329265 33329390 -86415508 + (TA)n Simple_repeat Simple_repeat 2 129 0 329 297 27 70 chr13 33330635 33330820 -86414078 + L1ME4a LINE L1 5295 5471 -2337 387 270 114 44 chr13 33330852 33330995 -86413903 + L1ME4a LINE L1 5534 5665 -456 2093 154 0 0 chr13 33330995 33331306 -86413592 + AluSx SINE Alu 1 311 -1 387 270 114 44 chr13 33331306 33331529 -86413369 + L1ME4a LINE L1 5665 5926 -195 22 0 0 0 chr13 33331579 33331601 -86413297 + AT_rich Low_complexity Low_complexity 1 22 0 253 278 87 23 chr13 33331801 33331974 -86412924 - MLT1K LTR MaLR -39 549 366 547 181 19 0 chr13 33332295 33332400 -86412498 + AluJo SINE Alu 1 107 -205 29458 55 4 1 chr13 33332400 33337143 -86407755 + L1PA5 LINE L1 1398 6153 -1 2070 133 10 10 chr13 33337155 33337457 -86407441 + AluSq SINE Alu 1 302 -11 396 247 155 26 chr13 33337669 33337863 -86407035 - MIR SINE MIR -24 238 20 1008 55 29 36 chr13 33338254 33338563 -86406335 + (GAAA)n Simple_repeat Simple_repeat 1 307 0 629 162 12 126 chr13 33338571 33338738 -86406160 + AluJo SINE Alu 106 253 -59 189 121 0 0 chr13 33339132 33339165 -86405733 + (GA)n Simple_repeat Simple_repeat 2 34 0 297 276 67 0 chr13 33341540 33341645 -86403253 - MIR3 SINE MIR -4 204 93 33 0 0 0 chr13 33342967 33343000 -86401898 + AT_rich Low_complexity Low_complexity 1 33 0 1984 172 3 0 chr13 33343894 33344338 -86400560 + AluSx SINE Alu 1 445 0 13888 75 3 10 chr13 33344482 33346537 -86398361 + L1P LINE L1 802 2841 -3305 215 318 173 9 chr13 33347003 33347113 -86397785 + L2 LINE L2 3186 3313 0 2323 103 0 6 chr13 33347190 33347502 -86397396 - AluSg SINE Alu 0 310 1 513 44 0 0 chr13 33348874 33348942 -86395956 + (TCTCCC)n Simple_repeat Simple_repeat 5 72 0 3940 153 26 6 chr13 33349921 33350158 -86394740 - Tigger1 DNA MER2_type 0 2418 2187 180 0 0 0 chr13 33350158 33350178 -86394720 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3940 153 26 6 chr13 33350178 33350254 -86394644 - Tigger1 DNA MER2_type -231 2187 2114 2452 77 0 13 chr13 33350254 33350567 -86394331 - AluY SINE Alu -2 309 1 3940 153 26 6 chr13 33350567 33350970 -86393928 - Tigger1 DNA MER2_type -304 2114 1686 5416 162 30 2 chr13 33350973 33351950 -86392948 - Tigger1 DNA MER2_type -1410 1008 5 479 266 31 8 chr13 33351980 33352108 -86392790 + L2 LINE L2 3134 3264 -8 213 94 0 0 chr13 33352135 33352167 -86392731 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1575 258 52 22 chr13 33352436 33352952 -86391946 + MER74B LTR ERVL 1 535 -87 1427 193 23 49 chr13 33352952 33353257 -86391641 - AluJb SINE Alu -5 297 1 1575 258 52 22 chr13 33353257 33353278 -86391620 + MER74B LTR ERVL 535 554 -68 433 229 85 25 chr13 33353401 33353519 -86391379 + L2 LINE L2 3189 3313 0 255 294 69 20 chr13 33353558 33353660 -86391238 + L2 LINE L2 3152 3258 -14 205 324 29 44 chr13 33353814 33353950 -86390948 + MIR3 SINE MIR 15 148 -60 320 289 102 8 chr13 33354417 33354545 -86390353 - MIR SINE MIR -121 141 2 328 263 32 11 chr13 33356301 33356396 -86388502 + L2 LINE L2 2685 2781 -533 1118 297 96 8 chr13 33356486 33356970 -86387928 + L2 LINE L2 2782 3313 0 1970 121 65 39 chr13 33356993 33357348 -86387550 - THE1B LTR MaLR 0 364 1 242 347 31 20 chr13 33357891 33357989 -86386909 - MER91A DNA MER1_type 0 196 98 252 321 113 19 chr13 33358311 33358417 -86386481 + MIR SINE MIR 32 147 -61 516 125 0 0 chr13 33358705 33358785 -86386113 - MADE1 DNA Mariner 0 80 1 603 266 117 37 chr13 33358815 33359217 -86385681 - L1MEc LINE L1 -3939 2457 2024 447 279 55 30 chr13 33359454 33359655 -86385243 - L1MEc LINE L1 -5853 352 147 291 265 15 0 chr13 33359920 33359988 -86384910 + L2 LINE L2 3204 3272 0 248 342 0 0 chr13 33360140 33360219 -86384679 - MIR SINE MIR -16 246 168 219 333 21 21 chr13 33360768 33360861 -86384037 - L3 LINE CR1 -1415 162 70 437 195 0 0 chr13 33360946 33361028 -86383870 - AluJo SINE Alu -5 307 226 * 686 169 0 2 chr13 33361024 33361178 -86383720 - AluJo SINE Alu -126 186 1 316 308 42 17 chr13 33361316 33361436 -86383462 - L2 LINE L2 -1 3312 3190 316 244 44 22 chr13 33362024 33362114 -86382784 - L2 LINE L2 0 3313 3222 361 286 8 17 chr13 33363971 33364090 -86380808 - L2 LINE L2 -5 3308 3191 371 187 11 11 chr13 33364204 33364295 -86380603 - L1PA16 LINE L1 0 6166 6076 33 0 0 0 chr13 33364378 33364411 -86380487 + AT_rich Low_complexity Low_complexity 1 33 0 1483 148 29 0 chr13 33364793 33365070 -86379828 + L1MA8 LINE L1 6004 6288 -3 217 354 63 25 chr13 33365437 33365516 -86379382 + L3b LINE CR1 1490 1571 -12 868 236 85 69 chr13 33366481 33366845 -86378053 - MLT1A2 LTR MaLR -4 370 1 314 303 9 0 chr13 33367470 33367579 -86377319 - MER103 DNA DNA -49 117 8 293 241 65 15 chr13 33367600 33367740 -86377158 + MLT1J2 LTR MaLR 1 146 -263 456 212 51 6 chr13 33367825 33367992 -86376906 + MLT1J2 LTR MaLR 274 405 -4 756 225 70 20 chr13 33368090 33368290 -86376608 - MER58A DNA MER1_type -13 211 2 1123 220 79 7 chr13 33370157 33370434 -86374464 - MER33 DNA MER1_type 0 324 28 398 227 34 0 chr13 33370484 33370572 -86374326 - MIR SINE MIR -90 172 82 4122 96 2 5 chr13 33370617 33370755 -86374143 - L1PA12 LINE L1 -2 6166 6029 2762 91 11 0 chr13 33370755 33371106 -86373792 + THE1A LTR MaLR 1 355 0 12421 88 15 2 chr13 33371106 33372665 -86372233 + THE1A-int LTR MaLR 1 1580 0 3032 68 3 0 chr13 33372667 33373019 -86371879 + THE1A LTR MaLR 3 355 0 4122 96 2 5 chr13 33373019 33373429 -86371469 - L1PA12 LINE L1 -139 6029 5616 317 306 198 51 chr13 33373554 33373927 -86370971 - L3 LINE CR1 -363 1214 787 2029 123 3 27 chr13 33374092 33374392 -86370506 + AluSx SINE Alu 1 293 -19 754 314 96 17 chr13 33374442 33374795 -86370103 + MLT1I LTR MaLR 3 383 -26 1537 171 62 14 chr13 33377037 33377312 -86367586 - AluJo SINE Alu -20 292 5 419 276 0 35 chr13 33378558 33378674 -86366224 + MER81 DNA DNA 1 112 -2 186 319 15 74 chr13 33378677 33378812 -86366086 + MIR SINE MIR 14 140 -122 498 281 8 0 chr13 33378985 33379113 -86365785 + MER94 DNA DNA 1 129 -5 2221 99 0 23 chr13 33379372 33379674 -86365224 + AluY SINE Alu 1 295 -16 427 53 0 18 chr13 33379805 33379862 -86365036 - MADE1 DNA Mariner 0 80 25 2007 98 0 0 chr13 33379864 33380118 -86364780 + AluSx SINE Alu 3 256 -56 3842 75 18 77 chr13 33380764 33381492 -86363406 + SVA Other Other 439 1123 -263 582 311 19 19 chr13 33382257 33382466 -86362432 - MIR SINE MIR -41 221 13 1188 127 0 0 chr13 33382834 33383007 -86361891 - L1MA6 LINE L1 0 6300 6128 3796 152 57 32 chr13 33383007 33383196 -86361702 + Tigger3(Golem) DNA MER2_type 2 185 -2843 2254 110 0 0 chr13 33383196 33383495 -86361403 + AluSx SINE Alu 1 299 -13 3796 152 57 32 chr13 33383495 33384136 -86360762 + Tigger3(Golem) DNA MER2_type 185 3028 0 4799 166 5 14 chr13 33384136 33385393 -86359505 - L1MA6 LINE L1 -170 6130 4883 267 186 0 0 chr13 33386986 33387029 -86357869 + MLT1D LTR MaLR 1 43 -462 2185 81 0 0 chr13 33387030 33387291 -86357607 + AluSg SINE Alu 1 261 -49 1029 158 0 23 chr13 33387323 33387500 -86357398 + MLT1D LTR MaLR 333 505 0 262 282 120 43 chr13 33388889 33389006 -86355892 + MIR SINE MIR 25 150 -112 474 241 97 7 chr13 33389940 33390085 -86354813 + LTR16A LTR ERVL 293 450 0 776 320 61 28 chr13 33390097 33390556 -86354342 - MARNA DNA Mariner -93 493 20 223 330 68 0 chr13 33390748 33390836 -86354062 + L2 LINE L2 3171 3264 -8 189 0 0 0 chr13 33390902 33390923 -86353975 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2702 165 19 2 chr13 33391433 33391852 -86353046 - MSTB LTR MaLR 0 426 1 4565 37 6 0 chr13 33392295 33392814 -86352084 + L1PA4 LINE L1 5634 6155 0 262 357 62 40 chr13 33393816 33394040 -86350858 - MIR SINE MIR -14 248 20 505 281 107 29 chr13 33394357 33394657 -86350241 + L1ME4a LINE L1 5309 5631 -490 318 319 42 25 chr13 33394658 33394899 -86349999 + L1ME4a LINE L1 5682 5926 -195 415 365 115 21 chr13 33395327 33395710 -86349188 - L2 LINE L2 -16 3256 2838 254 342 49 49 chr13 33395946 33396189 -86348709 - L2 LINE L2 -479 2835 2593 216 372 102 14 chr13 33396417 33396788 -86348110 - L2 LINE L2 -1003 2311 1908 188 271 94 0 chr13 33400427 33400512 -86344386 - MIR SINE MIR -8 254 162 1282 234 58 58 chr13 33401500 33401949 -86342949 + MLT1D LTR MaLR 5 453 -52 206 121 0 0 chr13 33403356 33403389 -86341509 + (A)n Simple_repeat Simple_repeat 1 33 0 8727 162 15 12 chr13 33403391 33405893 -86339005 + L1PB1 LINE L1 3644 6149 -2 5312 156 16 49 chr13 33406191 33407243 -86337655 + L1PB4 LINE L1 4782 5867 -289 327 49 0 0 chr13 33407243 33407284 -86337614 + (CA)n Simple_repeat Simple_repeat 2 42 0 2148 221 6 30 chr13 33407284 33407751 -86337147 + LTR22A LTR ERVK 3 458 0 5312 156 16 49 chr13 33407751 33408104 -86336794 + L1PB4 LINE L1 5865 6145 -11 6871 129 17 13 chr13 33408280 33409891 -86335007 + L1MA2 LINE L1 4677 6297 -7 2424 70 3 0 chr13 33409891 33410189 -86334709 - AluY SINE Alu -12 299 1 26 30 0 0 chr13 33410189 33410222 -86334676 + AT_rich Low_complexity Low_complexity 1 33 0 452 231 163 7 chr13 33412868 33413015 -86331883 - MIR SINE MIR -14 248 79 216 67 0 0 chr13 33413062 33413092 -86331806 + (TC)n Simple_repeat Simple_repeat 1 30 0 1098 178 20 15 chr13 33413108 33413305 -86331593 + MER3 DNA MER1_type 2 199 -10 273 239 0 14 chr13 33413373 33413444 -86331454 - MIR SINE MIR -71 191 122 1263 152 17 46 chr13 33413456 33413693 -86331205 + MSTB1 LTR MaLR 1 230 -202 1086 145 17 0 chr13 33414555 33414727 -86330171 + MSTB1 LTR MaLR 256 430 -2 316 260 94 10 chr13 33414868 33414964 -86329934 + L2 LINE L2 3210 3313 0 281 351 264 5 chr13 33414992 33415200 -86329698 + L3b LINE CR1 1269 1530 -53 310 279 90 0 chr13 33415979 33416101 -86328797 - LTR33A LTR ERVL 0 523 391 500 306 77 25 chr13 33416203 33416438 -86328460 - LTR33A LTR ERVL -276 247 1 190 246 115 0 chr13 33416577 33416638 -86328260 + L2 LINE L2 3205 3272 0 1678 167 0 46 chr13 33416826 33417149 -86327749 + AluJo SINE Alu 1 308 -4 2185 102 6 37 chr13 33417487 33417809 -86327089 + AluSx SINE Alu 1 312 0 254 264 0 0 chr13 33418115 33418187 -86326711 + L1MC/D LINE L1 5680 5751 -2057 276 354 10 10 chr13 33418860 33418956 -86325942 + L2 LINE L2 3177 3272 0 2325 170 39 30 chr13 33419144 33419604 -86325294 + MLT1C LTR MaLR 1 464 -3 255 333 67 11 chr13 33420167 33420257 -86324641 - L2 LINE L2 -25 3247 3153 29 78 0 0 chr13 33422270 33422334 -86322564 + AT_rich Low_complexity Low_complexity 1 64 0 224 368 36 36 chr13 33422618 33422631 -86322267 - L2 LINE L2 0 3272 3260 207 0 0 0 chr13 33422631 33422654 -86322244 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 224 368 36 36 chr13 33422654 33422806 -86322092 - L2 LINE L2 -11 3261 3107 21 36 0 0 chr13 33423435 33423463 -86321435 + AT_rich Low_complexity Low_complexity 1 28 0 222 262 177 28 chr13 33424338 33424479 -86320419 + L2 LINE L2 3144 3305 -8 2326 96 0 3 chr13 33425359 33425660 -86319238 + AluSg SINE Alu 2 301 -9 1353 53 12 16 chr13 33425714 33425963 -86318935 + (GAAA)n Simple_repeat Simple_repeat 4 249 0 2861 224 25 5 chr13 33426337 33426976 -86317922 + MER82 DNA MER2_type 1 652 -1 25 0 0 0 chr13 33427606 33427631 -86317267 + AT_rich Low_complexity Low_complexity 1 25 0 206 247 156 0 chr13 33429222 33429299 -86315599 + L2 LINE L2 2305 2393 -921 278 138 17 0 chr13 33429446 33429504 -86315394 + GA-rich Low_complexity Low_complexity 4 62 0 223 277 24 72 chr13 33429817 33429900 -86314998 + MIR SINE MIR 109 187 -75 1222 258 105 46 chr13 33430075 33430811 -86314087 + L2 LINE L2 2527 3313 0 1709 173 23 13 chr13 33431261 33431562 -86313336 - AluJo SINE Alu -8 304 1 22 56 0 0 chr13 33431630 33431666 -86313232 + AT_rich Low_complexity Low_complexity 1 36 0 270 229 24 0 chr13 33432212 33432295 -86312603 + L1ME LINE L1 5670 5754 -408 608 304 23 37 chr13 33433431 33433645 -86311253 + MIR SINE MIR 52 262 0 211 229 0 0 chr13 33433645 33433693 -86311205 + (TTA)n Simple_repeat Simple_repeat 2 49 0 338 292 92 0 chr13 33433897 33434017 -86310881 - MIR SINE MIR -1 261 131 2338 123 83 5 chr13 33434143 33434540 -86310358 + MSTA LTR MaLR 1 428 0 665 147 0 9 chr13 33435069 33435178 -86309720 + AluSq/x SINE Alu 1 108 -205 364 313 79 0 chr13 33435680 33435889 -86309009 + L1ME LINE L1 5592 5818 -303 195 227 0 0 chr13 33436005 33436049 -86308849 + L2 LINE L2 3021 3064 -208 195 222 62 74 chr13 33436192 33436273 -86308625 + MIR SINE MIR 183 262 0 1973 134 13 19 chr13 33436573 33436887 -86308011 + AluSx SINE Alu 1 312 0 1400 234 103 39 chr13 33438777 33439261 -86305637 - MLT1F LTR MaLR -19 523 9 1081 204 44 87 chr13 33439354 33439700 -86305198 + MER39 LTR ERV1 68 589 -118 2051 119 25 0 chr13 33439700 33439986 -86304912 + AluSp SINE Alu 1 293 -20 1081 204 44 87 chr13 33439986 33440062 -86304836 + MER39 LTR ERV1 589 667 -40 1419 196 122 9 chr13 33440174 33440321 -86304577 + MLT1A2 LTR MaLR 1 130 -244 252 0 0 0 chr13 33440321 33440349 -86304549 + (TC)n Simple_repeat Simple_repeat 1 28 0 1419 196 122 9 chr13 33440349 33440537 -86304361 + MLT1A2 LTR MaLR 130 374 0 207 264 0 19 chr13 33440798 33440851 -86304047 + GA-rich Low_complexity Low_complexity 128 179 0 2468 201 52 89 chr13 33441602 33442486 -86302412 + MER69 DNA AcHobo 1451 2287 -239 2144 104 7 20 chr13 33442486 33442785 -86302113 - AluSg SINE Alu -15 295 1 2468 201 52 89 chr13 33442785 33443017 -86301881 + MER69 DNA AcHobo 2287 2526 0 230 255 176 0 chr13 33443053 33443155 -86301743 - L2 LINE L2 -1262 2052 1933 238 0 0 0 chr13 33443187 33443215 -86301683 + THE1C LTR MaLR 1 28 -347 320 296 18 11 chr13 33445343 33445480 -86299418 - MLT1H1 LTR MaLR -2 565 429 710 291 54 22 chr13 33445776 33446381 -86298517 - L1ME LINE L1 -415 5681 5056 572 263 78 61 chr13 33446432 33447092 -86297806 - L1ME LINE L1 -4748 1513 807 189 368 23 0 chr13 33448012 33448099 -86296799 - L2 LINE L2 -962 2352 2264 423 183 0 0 chr13 33448376 33448458 -86296440 + (TG)n Simple_repeat Simple_repeat 1 82 0 345 275 183 0 chr13 33448648 33448779 -86296119 - MIR3 SINE MIR -12 196 42 240 333 36 29 chr13 33449468 33449606 -86295292 + MIR3 SINE MIR 7 145 -63 1455 214 43 6 chr13 33449616 33449967 -86294931 + MLT1B LTR MaLR 8 371 -19 24 0 0 0 chr13 33451094 33451118 -86293780 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 33452090 33452113 -86292785 + AT_rich Low_complexity Low_complexity 1 23 0 4336 82 2 36 chr13 33452117 33452760 -86292138 - L1PB1 LINE L1 -6 6145 5525 406 306 132 4 chr13 33453232 33453467 -86291431 - L1ME LINE L1 -299 5822 5558 860 268 121 14 chr13 33454036 33454391 -86290507 - LTR16C LTR ERVL 0 491 99 352 287 33 8 chr13 33456768 33456890 -86288008 + L1ME LINE L1 5588 5712 -409 232 178 100 56 chr13 33457408 33457498 -86287400 - Charlie4 DNA MER1_type -587 1374 1281 3618 111 7 16 chr13 33457802 33458286 -86286612 + MER41A LTR ERV1 3 483 -71 2257 102 0 3 chr13 33458286 33458591 -86286307 - AluSq SINE Alu -9 304 1 3618 111 7 16 chr13 33458591 33458663 -86286235 + MER41A LTR ERV1 483 554 0 2132 123 0 49 chr13 33459130 33459456 -86285442 - AluSg SINE Alu 0 310 1 204 125 0 0 chr13 33461086 33461118 -86283780 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2004 212 114 19 chr13 33461810 33461985 -86282913 + L1MC4a LINE L1 7166 7323 -485 1723 115 17 0 chr13 33461985 33462247 -86282651 + AluSx SINE Alu 47 312 0 2004 212 114 19 chr13 33462247 33462655 -86282243 + L1MC4a LINE L1 7323 7806 -2 281 227 176 42 chr13 33464954 33465073 -86279825 - MIR3 SINE MIR -64 144 10 4210 80 2 0 chr13 33465239 33465792 -86279106 - MER41A LTR ERV1 0 554 1 1988 147 24 37 chr13 33466329 33466709 -86278189 - THE1C LTR MaLR 0 375 1 363 179 60 40 chr13 33467167 33467388 -86277510 - MER34B LTR ERV1 -5 537 355 2839 122 7 91 chr13 33467551 33468167 -86276731 + MER4B LTR ERV1 1 564 -46 368 169 22 45 chr13 33468301 33468390 -86276508 - MER34C LTR ERV1 -459 126 40 3425 169 49 25 chr13 33468591 33469301 -86275597 + LTR8A LTR ERV1 1 727 0 311 350 10 0 chr13 33470150 33470247 -86274651 + MIR3 SINE MIR 110 207 -1 234 257 29 100 chr13 33471501 33471641 -86273257 - L2 LINE L2 -202 3070 2941 304 333 79 8 chr13 33472195 33472321 -86272577 - L2 LINE L2 -196 3076 2942 628 225 7 20 chr13 33472350 33472501 -86272397 + MER3 DNA MER1_type 5 153 -56 2570 189 13 25 chr13 33472505 33473062 -86271836 - MER89 LTR ERV1 0 559 10 182 257 156 18 chr13 33474435 33474544 -86270354 + L2 LINE L2 3186 3309 -4 23 0 0 0 chr13 33474547 33474570 -86270328 + AT_rich Low_complexity Low_complexity 1 23 0 214 376 9 46 chr13 33474629 33474738 -86270160 - L2 LINE L2 0 3272 3168 1107 160 0 0 chr13 33474892 33475061 -86269837 + AluSg/x SINE Alu 134 302 -10 288 0 0 0 chr13 33477511 33477543 -86267355 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 426 20 0 0 chr13 33477542 33477593 -86267305 + (TG)n Simple_repeat Simple_repeat 2 52 0 546 223 8 0 chr13 33479263 33479384 -86265514 - MER94 DNA DNA -12 122 1 225 296 0 51 chr13 33479764 33479862 -86265036 - L2 LINE L2 -1 3312 3220 290 136 198 12 chr13 33479964 33480045 -86264853 - MLT1J LTR MaLR -2 509 414 1022 179 0 6 chr13 33480050 33480223 -86264675 + FAM SINE Alu 1 172 -3 798 251 54 133 chr13 33480272 33480754 -86264144 - MLT1J LTR MaLR -67 444 1 234 326 52 36 chr13 33481275 33481468 -86263430 - L2 LINE L2 -411 2903 2708 1963 157 13 0 chr13 33481471 33481776 -86263122 + AluSx SINE Alu 4 312 0 244 213 16 33 chr13 33482184 33482245 -86262653 + GA-rich Low_complexity Low_complexity 1 60 0 2076 141 13 7 chr13 33482261 33482567 -86262331 - AluSx SINE Alu -4 308 1 50 0 0 0 chr13 33482589 33482639 -86262259 + AT_rich Low_complexity Low_complexity 1 50 0 862 295 150 62 chr13 33482721 33483808 -86261090 - L2 LINE L2 0 3313 2126 389 275 55 44 chr13 33483876 33484058 -86260840 + MER69 DNA AcHobo 216 399 -827 2549 197 52 89 chr13 33485018 33485902 -86258996 + MER69 DNA AcHobo 1451 2286 -240 2088 117 7 13 chr13 33485902 33486200 -86258698 - AluY SINE Alu -15 296 1 2549 197 52 89 chr13 33486200 33486433 -86258465 + MER69 DNA AcHobo 2286 2526 0 544 252 80 58 chr13 33486469 33486606 -86258292 - L2 LINE L2 -1262 2052 1920 2125 139 46 0 chr13 33486606 33486952 -86257946 + THE1B LTR MaLR 1 362 -2 10619 98 16 58 chr13 33486955 33488602 -86256296 + THE1B-int LTR MaLR 2 1580 0 2219 152 22 0 chr13 33488602 33488958 -86255940 + THE1B LTR MaLR 1 364 0 544 252 80 58 chr13 33488958 33489041 -86255857 - L2 LINE L2 -1394 1920 1822 573 261 90 36 chr13 33489088 33489487 -86255411 + LTR33 LTR ERVL 45 521 0 183 80 0 0 chr13 33490259 33490284 -86254614 + (A)n Simple_repeat Simple_repeat 1 25 0 470 305 67 14 chr13 33490469 33490692 -86254206 + L2 LINE L2 2827 3061 -211 223 240 120 13 chr13 33490827 33490902 -86253996 + L2 LINE L2 3190 3272 0 192 341 24 24 chr13 33491340 33491422 -86253476 + MIR3 SINE MIR 2 83 -125 580 265 0 0 chr13 33491433 33491569 -86253329 + MIR SINE MIR 65 200 -62 282 352 113 7 chr13 33491601 33491743 -86253155 - MIR3 SINE MIR -34 174 18 2350 63 6 54 chr13 33493010 33493327 -86251571 - AluY SINE Alu -9 302 1 447 290 168 0 chr13 33493687 33493842 -86251056 + MER5A DNA MER1_type 9 189 0 413 253 137 60 chr13 33493968 33494150 -86250748 - MIR SINE MIR -66 196 1 1434 293 74 25 chr13 33495127 33495759 -86249139 - MLT2F LTR ERVL 0 663 1 251 255 92 0 chr13 33495942 33496040 -86248858 - MER103 DNA DNA -59 107 1 1656 197 79 6 chr13 33496170 33496510 -86248388 - MLT1A1 LTR MaLR 0 365 1 1264 240 41 43 chr13 33497974 33498412 -86246486 + LTR16A1 LTR ERVL 7 443 -14 770 258 12 8 chr13 33498503 33498755 -86246143 + L1M4 LINE L1 4795 5047 -1099 458 141 141 0 chr13 33498960 33499059 -86245839 + L1ME LINE L1 4839 4951 -1195 299 250 0 0 chr13 33499059 33499127 -86245771 + Tigger5 DNA MER2_type 2255 2322 -1 1162 268 65 6 chr13 33499180 33499972 -86244926 + L1ME LINE L1 4961 5795 -369 255 234 31 55 chr13 33499973 33500066 -86244832 + L1MC5 LINE L1 7789 7880 -81 1767 201 100 0 chr13 33500066 33500445 -86244453 + MER47B DNA MER2_type 1 417 -1 255 234 31 55 chr13 33500445 33500479 -86244419 + L1MC5 LINE L1 7880 7913 -48 266 288 0 0 chr13 33500742 33500822 -86244076 - MIR SINE MIR 0 262 183 267 311 100 28 chr13 33500846 33501026 -86243872 - L2 LINE L2 -5 3308 3116 400 263 10 20 chr13 33501379 33501478 -86243420 + MER5B DNA MER1_type 17 114 -64 191 269 45 30 chr13 33503977 33504044 -86240854 + L2 LINE L2 3205 3272 0 1810 171 44 3 chr13 33504586 33504884 -86240014 + AluJo SINE Alu 1 310 -2 22 0 0 0 chr13 33505285 33505307 -86239591 + AT_rich Low_complexity Low_complexity 1 22 0 2817 70 0 13 chr13 33505389 33505777 -86239121 + MLT2A1 LTR ERVL 1 383 -61 26 50 0 0 chr13 33505777 33505817 -86239081 + AT_rich Low_complexity Low_complexity 1 40 0 230 57 0 0 chr13 33505819 33505854 -86239044 - MLT2A1 LTR ERVL -44 400 366 366 125 11 4 chr13 33505884 33505967 -86238931 + MLT2A2 LTR ERVL 360 453 0 185 289 24 48 chr13 33506531 33506614 -86238284 - L2 LINE L2 -42 3230 3150 1660 214 73 52 chr13 33506722 33507240 -86237658 + MLT1F LTR MaLR 5 533 -9 236 276 23 11 chr13 33507260 33507347 -86237551 + MLT1F-int LTR MaLR 4 91 -1280 374 276 33 14 chr13 33507945 33508155 -86236743 + MLT1F-int LTR MaLR 307 520 -851 1341 112 128 0 chr13 33508189 33508439 -86236459 - L1MA9 LINE L1 -5 6307 6026 379 252 38 112 chr13 33509114 33509428 -86235470 + MLT1F-int LTR MaLR 1444 1734 -1 1007 246 34 15 chr13 33509429 33509697 -86235201 + MLT1F1 LTR MaLR 1 273 -269 2275 230 90 23 chr13 33509700 33510348 -86234550 + MER63C DNA MER1_type 2 704 -356 3086 168 15 74 chr13 33510348 33511082 -86233816 + LTR8 LTR ERV1 1 691 0 2275 230 90 23 chr13 33511082 33511158 -86233740 + MER63C DNA MER1_type 704 774 -156 2688 130 5 2 chr13 33511159 33511582 -86233316 + MER57B LTR ERV1 2 425 -9 604 195 8 8 chr13 33511651 33511779 -86233119 + MER63C DNA MER1_type 805 932 0 * 1176 180 33 12 chr13 33511779 33512023 -86232875 + MLT1F1 LTR MaLR 311 559 -8 341 232 22 103 chr13 33512208 33512334 -86232564 - MIR SINE MIR -64 144 20 256 133 109 32 chr13 33512644 33512659 -86232239 - L1MC3 LINE L1 -9 7776 7764 2160 64 25 0 chr13 33512659 33512941 -86231957 - L1PA5 LINE L1 -5 6149 5861 256 133 109 32 chr13 33512941 33513239 -86231659 - L1MC3 LINE L1 -21 7764 5989 263 149 0 0 chr13 33514140 33514187 -86230711 - Charlie1 DNA MER1_type -8 2753 2707 2229 198 9 2 chr13 33514282 33514716 -86230182 + MER44D DNA MER2_type 1 492 -113 415 284 9 0 chr13 33514712 33514821 -86230077 - Charlie1 DNA MER1_type -2650 111 2 * 420 293 96 27 chr13 33515131 33515319 -86229579 - MIR SINE MIR -11 251 51 790 244 76 25 chr13 33515339 33515577 -86229321 - MIR SINE MIR -1 261 12 2315 71 40 0 chr13 33516227 33516523 -86228375 + AluY SINE Alu 1 308 -3 222 189 57 0 chr13 33517076 33517129 -86227769 + CT-rich Low_complexity Low_complexity 4 59 0 360 43 0 0 chr13 33517487 33517533 -86227365 + (TG)n Simple_repeat Simple_repeat 1 46 0 1103 252 104 9 chr13 33518551 33518896 -86226002 - MLT1F1 LTR MaLR 0 567 190 261 0 0 0 chr13 33518960 33518989 -86225909 + (T)n Simple_repeat Simple_repeat 1 29 0 695 238 18 6 chr13 33519006 33519174 -86225724 - MLT1F1 LTR MaLR -372 170 1 1100 115 28 197 chr13 33520201 33520591 -86224307 - L1MB3 LINE L1 -13 6170 5847 1719 170 0 31 chr13 33520977 33521271 -86223627 + AluJb SINE Alu 1 285 -27 225 244 128 0 chr13 33522104 33522182 -86222716 - MLT1J2 LTR MaLR -20 430 343 347 256 150 8 chr13 33522265 33522398 -86222500 - MLT1I LTR MaLR -190 219 68 314 279 49 8 chr13 33522584 33522706 -86222192 + MER46C DNA MER2_type 1 127 -211 784 302 53 4 chr13 33522861 33523106 -86221792 - MIR SINE MIR -5 257 1 2072 121 3 7 chr13 33523541 33523846 -86221052 - AluSx SINE Alu -8 304 1 677 167 35 0 chr13 33523849 33523993 -86220905 - L1MA9 LINE L1 -3 6309 6161 5396 26 0 0 chr13 33524236 33524886 -86220012 + L1PA3 LINE L1 5516 6165 0 22 0 0 0 chr13 33525069 33525091 -86219807 + AT_rich Low_complexity Low_complexity 1 22 0 2196 62 7 30 chr13 33525879 33526183 -86218715 - AluY SINE Alu -2 309 13 189 252 272 0 chr13 33526513 33526616 -86218282 + L2 LINE L2 3122 3252 -20 614 200 0 15 chr13 33526636 33526771 -86218127 + L1PB4 LINE L1 6020 6152 -4 1539 160 80 33 chr13 33526868 33527143 -86217755 - AluJo SINE Alu -24 288 1 529 239 201 10 chr13 33527459 33527668 -86217230 - MIR SINE MIR -1 261 13 252 368 11 0 chr13 33528304 33528391 -86216507 - L2 LINE L2 -4 3309 3222 1412 178 2 121 chr13 33528477 33528882 -86216016 - MLT1A1 LTR MaLR -8 357 1 280 288 0 0 chr13 33528890 33528956 -86215942 + L2 LINE L2 3245 3310 -3 200 291 29 107 chr13 33530147 33530250 -86214648 - L2 LINE L2 -71 3201 3107 1881 137 3 11 chr13 33531723 33532028 -86212870 + AluSx SINE Alu 1 303 0 2843 178 40 30 chr13 33532997 33533625 -86211273 - LTR27 LTR ERV1 0 636 3 423 0 0 0 chr13 33534121 33534168 -86210730 + (TG)n Simple_repeat Simple_repeat 2 48 0 230 220 0 60 chr13 33535285 33535335 -86209563 + MIR SINE MIR 23 69 -193 185 281 16 16 chr13 33535350 33535414 -86209484 + MIR SINE MIR 199 262 0 537 220 139 122 chr13 33535754 33536295 -86208603 + MER34C LTR ERV1 36 585 0 1405 167 80 11 chr13 33536344 33536780 -86208118 + LTR54 LTR ERV1 1 510 0 412 262 104 37 chr13 33536796 33536960 -86207938 - MIR SINE MIR -58 204 30 201 291 134 47 chr13 33536982 33537109 -86207789 - L2 LINE L2 -11 3302 3165 311 235 185 34 chr13 33537110 33537229 -86207669 - MER5A DNA MER1_type -46 143 7 210 346 90 60 chr13 33537260 33537494 -86207404 - L2 LINE L2 -221 3051 2811 386 229 102 72 chr13 33538372 33538538 -86206360 - MER20B DNA MER1_type -612 171 1 292 244 102 117 chr13 33538924 33539223 -86205675 + HAL1 LINE L1 1347 1640 -867 2179 104 7 7 chr13 33539223 33539520 -86205378 - AluSg SINE Alu -13 297 1 292 244 102 117 chr13 33539520 33539621 -86205277 + HAL1 LINE L1 1640 1741 -766 21 0 0 0 chr13 33539960 33539981 -86204917 + AT_rich Low_complexity Low_complexity 1 21 0 1435 150 15 15 chr13 33540370 33540636 -86204262 - L1MC2 LINE L1 -12 6332 6067 414 277 0 0 chr13 33541061 33541173 -86203725 - L2 LINE L2 -606 2708 2597 1729 190 27 0 chr13 33541215 33541547 -86203351 - MER58B DNA MER1_type 0 341 1 281 0 77 0 chr13 33541548 33541587 -86203311 + T-rich Low_complexity Low_complexity 3 44 0 1522 93 28 161 chr13 33541598 33541920 -86202978 - AluSc SINE Alu -30 279 1 437 292 129 15 chr13 33542901 33543226 -86201672 + L1MC/D LINE L1 3589 3950 -2196 2269 49 10 26 chr13 33543438 33543742 -86201156 + AluY SINE Alu 1 299 -12 251 287 74 9 chr13 33543764 33543872 -86201026 - MLT1I LTR MaLR -22 387 273 413 290 45 11 chr13 33543877 33544053 -86200845 + L1MC/D LINE L1 5615 5796 -2012 21 0 0 0 chr13 33544059 33544080 -86200818 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 33544241 33544279 -86200619 + AT_rich Low_complexity Low_complexity 1 38 0 309 298 36 36 chr13 33544378 33544546 -86200352 - L1 LINE L1 -3677 2469 2302 1679 146 3 3 chr13 33545581 33545868 -86199030 + L1MA6 LINE L1 5844 6130 -170 1843 172 46 0 chr13 33545875 33546201 -86198697 - MER7A DNA MER2_type -7 339 1 857 205 100 0 chr13 33546221 33546411 -86198487 - MER3 DNA MER1_type 0 209 1 3937 222 89 42 chr13 33547529 33548853 -86196045 + HsTC2 DNA Tc2 61 1629 -269 2261 55 4 4 chr13 33548853 33549151 -86195747 + AluY SINE Alu 9 306 0 3937 222 89 42 chr13 33549151 33549437 -86195461 + HsTC2 DNA Tc2 1629 1900 2 1788 186 0 3 chr13 33551674 33551975 -86192923 + AluJb SINE Alu 1 300 -12 2286 112 0 0 chr13 33551978 33552281 -86192617 + AluSg SINE Alu 1 303 -7 2038 194 69 6 chr13 33552704 33553195 -86191703 - L1PA16 LINE L1 -1743 4403 3882 5416 134 18 16 chr13 33553213 33554939 -86189959 + L1PA16 LINE L1 4434 6157 -9 7893 135 16 10 chr13 33556080 33556478 -86188420 - HSMAR2 DNA Mariner -2 1300 906 207 0 0 0 chr13 33556478 33556501 -86188397 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7893 135 16 10 chr13 33556501 33557393 -86187505 - HSMAR2 DNA Mariner -396 906 2 477 313 25 40 chr13 33559974 33560172 -86184726 - MIR SINE MIR -12 250 56 453 19 0 0 chr13 33560399 33560453 -86184445 + (CA)n Simple_repeat Simple_repeat 2 55 0 6968 243 50 32 chr13 33561251 33562115 -86182783 + L1MEc LINE L1 2166 3012 -3203 1692 191 0 3 chr13 33562115 33562403 -86182495 + AluJb SINE Alu 1 287 -25 6968 243 50 32 chr13 33562403 33564283 -86180615 + L1MEc LINE L1 3012 4935 -1280 2160 158 5 16 chr13 33564283 33564662 -86180236 - THE1C LTR MaLR 0 375 1 6968 243 50 32 chr13 33564662 33564797 -86180101 + L1MEc LINE L1 4935 5066 -1149 1077 165 0 0 chr13 33564797 33564955 -86179943 + AluSq SINE Alu 1 158 -155 275 198 26 103 chr13 33564963 33565079 -86179819 + L1MA10 LINE L1 6228 6334 0 810 266 254 7 chr13 33565485 33565869 -86179029 + L2 LINE L2 2519 2989 -283 894 224 21 5 chr13 33565985 33566177 -86178721 + MLT1H LTR MaLR 40 234 -315 1470 196 58 0 chr13 33566295 33566413 -86178485 + AluJo SINE Alu 3 113 -199 243 0 0 0 chr13 33566413 33566440 -86178458 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1470 196 58 0 chr13 33566440 33566581 -86178317 + AluJo SINE Alu 113 277 -35 226 226 0 32 chr13 33566592 33566654 -86178244 + MLT1G1 LTR MaLR 520 579 -16 440 245 9 9 chr13 33566674 33566780 -86178118 + L2 LINE L2 3171 3276 -37 198 0 0 0 chr13 33566848 33566870 -86178028 + (TA)n Simple_repeat Simple_repeat 1 22 0 1039 251 47 0 chr13 33567105 33567340 -86177558 - MLT1F1 LTR MaLR 0 567 322 2084 92 9 82 chr13 33567470 33567798 -86177100 - AluSx SINE Alu -5 307 4 380 226 77 107 chr13 33567801 33567969 -86176929 - MLT1E LTR MaLR -375 167 5 189 107 0 0 chr13 33568772 33568800 -86176098 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 213 196 0 0 chr13 33569176 33569222 -86175676 + (CA)n Simple_repeat Simple_repeat 1 46 0 1384 276 56 82 chr13 33570637 33571348 -86173550 + MER21B LTR ERV1 22 714 -149 387 194 61 103 chr13 33571709 33571874 -86173024 + L2 LINE L2 2357 2514 -800 992 188 2 205 chr13 33571915 33572178 -86172720 + Charlie1a DNA MER1_type 1 153 -2608 1131 201 43 112 chr13 33572178 33572570 -86172328 - MLT1A1 LTR MaLR 0 365 1 992 188 2 205 chr13 33572570 33572715 -86172183 + Charlie1a DNA MER1_type 153 326 -1129 621 172 70 102 chr13 33572776 33572991 -86171907 + MER3 DNA MER1_type 1 208 -1 353 276 141 18 chr13 33574328 33574491 -86170407 - MIR SINE MIR -50 212 30 2115 138 33 30 chr13 33576243 33576606 -86168292 - THE1B LTR MaLR 0 364 1 200 83 0 28 chr13 33576988 33577024 -86167874 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 2232 147 0 8 chr13 33577028 33577395 -86167503 - L1PB1 LINE L1 -3 6148 5785 551 83 83 5 chr13 33577400 33577609 -86167289 + (TA)n Simple_repeat Simple_repeat 1 225 0 392 129 0 14 chr13 33577751 33577821 -86167077 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 849 136 0 0 chr13 33577821 33577946 -86166952 - AluJb SINE Alu -187 125 1 441 330 78 73 chr13 33577972 33578423 -86166475 + L2 LINE L2 2819 3271 -1 888 205 0 0 chr13 33578751 33578907 -86165991 + FRAM SINE Alu 2 157 -9 31 0 0 0 chr13 33578917 33578948 -86165950 + AT_rich Low_complexity Low_complexity 1 31 0 180 191 143 0 chr13 33578961 33579003 -86165895 - L3 LINE CR1 -71 1506 1459 1363 139 179 7 chr13 33579131 33579433 -86165465 + L1MB7 LINE L1 5815 6168 -16 1988 122 38 0 chr13 33579711 33579998 -86164900 - AluSx SINE Alu -14 298 1 25 0 0 0 chr13 33580006 33580031 -86164867 + AT_rich Low_complexity Low_complexity 1 25 0 198 171 0 0 chr13 33580352 33580387 -86164511 - L2 LINE L2 -6 3307 3273 532 233 184 82 chr13 33580936 33581267 -86163631 - MLT1A1 LTR MaLR 0 365 1 2058 189 26 8 chr13 33581278 33581658 -86163240 - MLT1A1-int LTR MaLR -11 1724 1338 1273 148 15 0 chr13 33581723 33581926 -86162972 - AluSg/x SINE Alu -4 306 101 760 182 32 0 chr13 33581931 33582085 -86162813 - MLT2B1 LTR ERVL -361 159 1 343 281 113 38 chr13 33584330 33584515 -86160383 + MER20 DNA MER1_type 1 199 -20 279 320 133 35 chr13 33585661 33585917 -86158981 - L2 LINE L2 -782 2532 2252 410 271 271 52 chr13 33586279 33586648 -86158250 + L2 LINE L2 2863 3312 -1 2147 110 0 19 chr13 33587441 33587749 -86157149 + AluSx SINE Alu 1 302 -10 755 109 0 9 chr13 33588116 33588226 -86156672 - MER46A DNA MER2_type -3 233 125 1541 131 0 4 chr13 33589543 33589772 -86155126 - MER46A DNA MER2_type -3 233 6 248 235 25 12 chr13 33590271 33590352 -86154546 - MLT1J LTR MaLR 0 511 430 184 373 55 18 chr13 33590906 33591016 -86153882 - L3b LINE CR1 -49 1534 1421 2045 131 7 0 chr13 33591190 33591481 -86153417 - AluSx SINE Alu -18 294 2 300 120 0 0 chr13 33592473 33592523 -86152375 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 370 330 81 4 chr13 33592995 33593159 -86151739 - MIR SINE MIR -76 132 10 1095 52 0 58 chr13 33593233 33593424 -86151474 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1793 148 11 3 chr13 33593424 33593836 -86151062 - AluSx SINE Alu 0 440 27 228 297 36 62 chr13 33593836 33594028 -86150870 - L2 LINE L2 -220 3052 2866 * 761 267 83 21 chr13 33594004 33594238 -86150660 + MIR SINE MIR 21 262 0 21 0 0 0 chr13 33594334 33594355 -86150543 + AT_rich Low_complexity Low_complexity 1 21 0 240 400 27 0 chr13 33598225 33598335 -86146563 - MIR SINE MIR -66 196 84 513 280 33 50 chr13 33598753 33598935 -86145963 + L2 LINE L2 3134 3312 -1 324 245 64 11 chr13 33600651 33600745 -86144153 - MIR SINE MIR -8 254 156 6866 142 24 6 chr13 33600745 33601839 -86143059 + Tigger7 DNA MER2_type 1 1114 -1373 3610 45 0 0 chr13 33601839 33602281 -86142617 + L1PA4 LINE L1 5711 6152 -3 476 205 0 0 chr13 33602310 33602393 -86142505 + Tigger7 DNA MER2_type 2505 2587 0 252 0 0 0 chr13 33602531 33602559 -86142339 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr13 33603424 33603445 -86141453 + AT_rich Low_complexity Low_complexity 1 21 0 393 277 92 41 chr13 33603836 33604031 -86140867 + MIR SINE MIR 2 206 -56 2153 82 3 48 chr13 33604439 33604755 -86140143 - AluY SINE Alu -9 302 1 1237 216 139 29 chr13 33605049 33605477 -86139421 - MLT1C LTR MaLR 0 467 6 223 322 58 0 chr13 33605907 33605994 -86138904 - L2 LINE L2 -627 2687 2596 288 373 13 32 chr13 33606508 33606666 -86138232 + L3 LINE CR1 13 167 -1410 301 327 33 33 chr13 33606771 33606924 -86137974 + L3 LINE CR1 416 568 -1009 669 241 35 96 chr13 33606936 33607197 -86137701 + MER112 DNA MER1_type 6 250 -10 239 250 161 8 chr13 33607246 33607370 -86137528 + L3 LINE CR1 634 776 -801 29 35 0 35 chr13 33607378 33607410 -86137488 + AT_rich Low_complexity Low_complexity 1 32 -24 1925 158 3 0 chr13 33607410 33607707 -86137191 - AluSq SINE Alu -15 298 1 29 35 0 35 chr13 33607707 33607732 -86137166 + AT_rich Low_complexity Low_complexity 32 56 0 265 275 0 92 chr13 33608259 33608390 -86136508 + L3 LINE CR1 964 1082 -495 458 315 94 28 chr13 33608613 33608826 -86136072 - MIR SINE MIR -34 228 2 215 331 191 0 chr13 33609227 33609384 -86135514 - MIR SINE MIR -23 239 53 22 0 0 0 chr13 33610501 33610523 -86134375 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 33610940 33610962 -86133936 + GC_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr13 33612550 33612575 -86132323 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 22 56 0 0 chr13 33614032 33614068 -86130830 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr13 33615470 33615494 -86129404 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 33615778 33615799 -86129099 + AT_rich Low_complexity Low_complexity 1 21 0 249 321 12 24 chr13 33616108 33616192 -86128706 + L2 LINE L2 3134 3216 -56 234 319 0 0 chr13 33616780 33616852 -86128046 + MLT1K LTR MaLR 200 271 -317 193 253 95 105 chr13 33617431 33617526 -86127372 - L2 LINE L2 -484 2830 2737 502 246 225 21 chr13 33618721 33618957 -86125941 + MLT1K LTR MaLR 279 562 -26 74 69 0 0 chr13 33618970 33619114 -86125784 + AT_rich Low_complexity Low_complexity 1 144 0 651 162 0 0 chr13 33619295 33619394 -86125504 + AluJ/FLAM SINE Alu 1 99 -213 601 172 0 0 chr13 33619393 33619486 -86125412 + AluJb SINE Alu 203 295 -17 * 375 267 154 21 chr13 33619542 33619782 -86125116 + L1ME LINE L1 5547 5818 -303 354 226 168 66 chr13 33619785 33619922 -86124976 + MIR SINE MIR 112 262 0 433 290 89 24 chr13 33620480 33620649 -86124249 - MIR SINE MIR -71 191 12 27 29 0 0 chr13 33621295 33621329 -86123569 + AT_rich Low_complexity Low_complexity 1 34 0 219 365 31 10 chr13 33621432 33621528 -86123370 - MIR SINE MIR -151 111 14 225 278 0 0 chr13 33621572 33621626 -86123272 - MIR SINE MIR -30 232 179 1962 147 41 29 chr13 33622115 33622249 -86122649 - MER2 DNA MER2_type 0 345 214 2115 126 52 15 chr13 33622249 33622574 -86122324 + MER1B DNA MER1_type 1 337 0 1962 147 41 29 chr13 33622574 33622780 -86122118 - MER2 DNA MER2_type -131 214 1 2004 157 21 3 chr13 33623086 33623424 -86121474 + MER2 DNA MER2_type 1 344 0 296 320 148 8 chr13 33623507 33623629 -86121269 - MIR3 SINE MIR -51 157 19 327 329 33 90 chr13 33623807 33624108 -86120790 - L2 LINE L2 -74 3198 2915 983 191 26 24 chr13 33624233 33624476 -86120422 - MLT2B1 LTR ERVL -174 240 1 216 139 93 23 chr13 33624562 33624605 -86120293 + L2 LINE L2 3267 3312 -1 25 65 0 0 chr13 33624793 33624839 -86120059 + AT_rich Low_complexity Low_complexity 1 46 0 922 121 5 107 chr13 33624953 33625008 -86119890 - L1MB3 LINE L1 -3 6180 6121 1157 143 39 0 chr13 33625008 33625211 -86119687 - L1MA6 LINE L1 0 6300 6090 922 121 5 107 chr13 33625211 33625361 -86119537 - L1MB3 LINE L1 -62 6121 5996 512 117 0 0 chr13 33625362 33625439 -86119459 - AluS SINE Alu -236 77 1 414 220 0 0 chr13 33625497 33625597 -86119301 + (CATATA)n Simple_repeat Simple_repeat 4 103 0 880 169 94 42 chr13 33626408 33626716 -86118182 + MER33 DNA MER1_type 1 324 0 6942 134 51 3 chr13 33628180 33629347 -86115551 + Tigger3b DNA MER2_type 10 1231 0 409 335 92 52 chr13 33630052 33630324 -86114574 - L2 LINE L2 0 3272 2990 917 191 115 32 chr13 33630336 33630614 -86114284 + MER33 DNA MER1_type 1 301 -23 283 208 13 26 chr13 33630798 33630875 -86114023 + MLT1J LTR MaLR 436 511 0 967 243 72 6 chr13 33630880 33631226 -86113672 + Charlie7 DNA MER1_type 863 1231 -1381 271 321 91 48 chr13 33631410 33631597 -86113301 - MIR3 SINE MIR 0 208 14 1530 167 72 72 chr13 33631627 33632017 -86112881 - MLT1B LTR MaLR 0 390 1 183 100 0 0 chr13 33632374 33632404 -86112494 + (TAA)n Simple_repeat Simple_repeat 1 30 0 309 310 6 16 chr13 33632404 33632575 -86112323 - MIR SINE MIR -11 251 37 218 324 36 18 chr13 33635005 33635116 -86109782 + MIR SINE MIR 17 129 -133 311 307 124 7 chr13 33635668 33635805 -86109093 + MIR3 SINE MIR 47 199 -9 530 211 73 0 chr13 33636140 33636249 -86108649 - MER58A DNA MER1_type 0 224 108 1460 264 102 46 chr13 33636367 33637025 -86107873 - MER21B LTR ERV1 -152 711 17 420 274 44 9 chr13 33637040 33637153 -86107745 - MER58A DNA MER1_type 0 117 1 22 35 0 0 chr13 33637240 33637269 -86107629 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr13 33637783 33637828 -86107070 + AT_rich Low_complexity Low_complexity 1 45 0 10525 163 32 3 chr13 33637874 33640653 -86104245 - L1PA12 LINE L1 -1 6167 3326 244 244 88 31 chr13 33640754 33640914 -86103984 - L1MDb LINE L1 -4653 1934 1766 1232 107 11 28 chr13 33640928 33641105 -86103793 - AluSg/x SINE Alu -25 287 114 652 328 81 36 chr13 33641150 33641655 -86103243 - L1MDb LINE L1 -4887 1509 1110 1527 201 3 3 chr13 33641655 33641958 -86102940 - AluJb SINE Alu -9 303 1 652 328 81 36 chr13 33641958 33642128 -86102770 - L1MDb LINE L1 -5286 1110 949 254 224 24 12 chr13 33642336 33642421 -86102477 - L1MB2 LINE L1 0 6171 6086 1833 199 6 0 chr13 33642421 33642758 -86102140 + MER2 DNA MER2_type 1 339 -6 544 219 224 10 chr13 33642770 33642962 -86101936 - L1MB7 LINE L1 -84 6100 5868 2087 279 114 27 chr13 33643313 33644465 -86100433 - L2 LINE L2 0 3313 2078 1921 132 14 14 chr13 33644473 33644760 -86100138 + AluJb SINE Alu 14 300 -12 1308 191 57 35 chr13 33644766 33644907 -86099991 + AluJo SINE Alu 1 138 -174 351 0 0 0 chr13 33644907 33644946 -86099952 + (TA)n Simple_repeat Simple_repeat 1 39 0 1308 191 57 35 chr13 33644946 33645087 -86099811 + AluJo SINE Alu 138 289 -23 584 298 235 22 chr13 33645087 33645500 -86099398 - L2 LINE L2 -1566 1748 1248 23 0 0 0 chr13 33646058 33646081 -86098817 + AT_rich Low_complexity Low_complexity 1 23 0 1963 189 37 11 chr13 33646264 33646644 -86098254 - MSTD LTR MaLR -6 390 1 211 247 74 12 chr13 33646654 33646735 -86098163 - MIR SINE MIR -29 233 148 187 351 0 18 chr13 33646764 33646821 -86098077 - MIR SINE MIR -183 79 24 193 373 27 0 chr13 33647334 33647409 -86097489 - L2 LINE L2 -48 3224 3148 263 252 159 20 chr13 33647467 33647618 -86097280 - L1ME4a LINE L1 0 6121 5950 2193 109 7 0 chr13 33647640 33647934 -86096964 - AluSx SINE Alu -16 296 1 239 301 35 71 chr13 33648621 33648734 -86096164 - MIR3 SINE MIR -23 185 77 195 69 0 0 chr13 33649293 33649322 -86095576 + (A)n Simple_repeat Simple_repeat 1 29 0 22 56 0 0 chr13 33649857 33649893 -86095005 + AT_rich Low_complexity Low_complexity 1 36 0 185 254 0 15 chr13 33650386 33650453 -86094445 + (TA)n Simple_repeat Simple_repeat 2 67 0 539 333 86 44 chr13 33650660 33650755 -86094143 - L2 LINE L2 -32 3281 3191 297 0 0 0 chr13 33650755 33650788 -86094110 + (CA)n Simple_repeat Simple_repeat 2 34 0 539 333 86 44 chr13 33650788 33651303 -86093595 - L2 LINE L2 -122 3191 2645 2545 191 19 0 chr13 33651463 33651996 -86092902 - L1PA12 LINE L1 -2886 4698 4156 275 75 19 16 chr13 33651999 33652051 -86092847 - Alu SINE Alu -260 39 1 6790 220 28 21 chr13 33652052 33653557 -86091341 - L1PA12 LINE L1 -4968 2616 7 332 266 129 0 chr13 33654235 33654359 -86090539 - MIR SINE MIR -72 190 51 6218 137 32 3 chr13 33654398 33655820 -86089078 + L1PB1 LINE L1 4688 6150 -1 243 103 0 0 chr13 33655871 33655910 -86088988 + (T)n Simple_repeat Simple_repeat 1 39 0 2145 135 3 0 chr13 33656169 33656480 -86088418 - AluSp SINE Alu -1 312 1 2158 122 0 0 chr13 33656554 33656849 -86088049 - AluSx SINE Alu -17 295 1 1449 189 56 25 chr13 33657061 33657347 -86087551 - AluJo SINE Alu -17 295 1 2205 248 79 44 chr13 33657736 33658488 -86086410 - L1ME2 LINE L1 -22 6211 5390 2048 131 34 0 chr13 33658488 33658779 -86086119 + AluSx SINE Alu 2 302 -10 2205 248 79 44 chr13 33658779 33659056 -86085842 - L1ME2 LINE L1 -843 5390 5124 387 226 99 94 chr13 33659157 33659563 -86085335 - L1ME2 LINE L1 -1340 4875 4465 299 24 0 24 chr13 33659563 33659604 -86085294 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 544 216 75 0 chr13 33659613 33659747 -86085151 + MLT1A1 LTR MaLR 1 144 -221 471 282 66 42 chr13 33659750 33660009 -86084889 - L1ME2 LINE L1 -2022 4193 3929 2210 230 107 0 chr13 33660025 33660613 -86084285 - L1MB7 LINE L1 0 6184 5534 1035 217 234 36 chr13 33660612 33661354 -86083544 - L1ME2 LINE L1 -2299 3916 3028 * 917 241 67 52 chr13 33661358 33661421 -86083477 - L1ME2 LINE L1 -3248 2967 2906 2001 126 0 17 chr13 33661421 33661714 -86083184 - AluSx SINE Alu -19 293 6 917 241 67 52 chr13 33661714 33662131 -86082767 - L1ME2 LINE L1 -3309 2906 2480 180 0 0 0 chr13 33662134 33662154 -86082744 + (TTA)n Simple_repeat Simple_repeat 2 21 0 33064 76 48 8 chr13 33662154 33667754 -86077144 - L1PA6 LINE L1 -14 6455 632 300 28 0 0 chr13 33667754 33667790 -86077108 - L1PA6 LINE L1 -6416 45 10 * 494 248 77 63 chr13 33667788 33668172 -86076726 - L1ME2 LINE L1 -3723 2523 2143 851 202 52 0 chr13 33668292 33668548 -86076350 - L1M4 LINE L1 -725 5518 5252 5418 252 76 47 chr13 33668552 33670063 -86074835 - L1MEc LINE L1 -987 5228 3762 1937 106 0 4 chr13 33670063 33670327 -86074571 - AluSx SINE Alu -2 310 48 5418 252 76 47 chr13 33670327 33671303 -86073595 - L1MEc LINE L1 -2453 3762 2816 1860 148 7 7 chr13 33671303 33671593 -86073305 - AluSx SINE Alu -21 291 2 5418 252 76 47 chr13 33671593 33671928 -86072970 - L1MEc LINE L1 -3399 2816 2492 569 277 94 0 chr13 33671928 33672130 -86072768 + MER58A DNA MER1_type 1 221 -3 5418 252 76 47 chr13 33672130 33672849 -86072049 - L1MEc LINE L1 -3723 2492 1617 381 326 191 0 chr13 33673470 33673662 -86071236 + MIR SINE MIR 34 260 -2 21 0 0 0 chr13 33674222 33674243 -86070655 + AT_rich Low_complexity Low_complexity 1 21 0 1510 182 24 68 chr13 33674593 33674962 -86069936 - L1PA15 LINE L1 -3 6162 5810 243 0 0 0 chr13 33675532 33675559 -86069339 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 68 0 0 chr13 33675643 33675687 -86069211 + AT_rich Low_complexity Low_complexity 1 44 0 3193 220 55 40 chr13 33675695 33675923 -86068975 + L1ME1 LINE L1 5211 5434 -732 1659 116 39 105 chr13 33675923 33676286 -86068612 + MER44D DNA MER2_type 1 609 0 3193 220 55 40 chr13 33676286 33676737 -86068161 + L1ME1 LINE L1 5434 5876 -290 2009 98 15 0 chr13 33676737 33677011 -86067887 + AluSg SINE Alu 1 278 -32 324 0 0 0 chr13 33677017 33677053 -86067845 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 3193 220 55 40 chr13 33677053 33677308 -86067590 + L1ME1 LINE L1 5880 6161 -5 21 0 0 0 chr13 33677315 33677336 -86067562 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr13 33677908 33677931 -86066967 + (TC)n Simple_repeat Simple_repeat 2 24 0 379 0 39 0 chr13 33678115 33678166 -86066732 + (CA)n Simple_repeat Simple_repeat 2 54 0 914 262 13 4 chr13 33678335 33678568 -86066330 - MIR SINE MIR -23 239 5 31 26 0 0 chr13 33679039 33679077 -86065821 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr13 33679362 33679397 -86065501 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr13 33679473 33679510 -86065388 + AT_rich Low_complexity Low_complexity 1 37 0 193 313 157 18 chr13 33682057 33682223 -86062675 + L3 LINE CR1 205 393 -1184 278 369 21 7 chr13 33682491 33682632 -86062266 + L3 LINE CR1 981 1123 -454 203 203 89 89 chr13 33682984 33683063 -86061835 + L3 LINE CR1 1425 1503 -74 404 256 58 16 chr13 33683134 33683255 -86061643 - MIR SINE MIR -103 159 34 20000 168 39 19 chr13 33683302 33688822 -86056076 + L1M1 LINE L1 13 5638 -1927 555 65 98 0 chr13 33688997 33689150 -86055748 + (TA)n Simple_repeat Simple_repeat 1 168 0 13546 197 60 9 chr13 33689150 33695192 -86049706 - L1P5 LINE L1 -360 6507 6 188 356 139 0 chr13 33695642 33695743 -86049155 + L2 LINE L2 3149 3263 -9 243 245 0 0 chr13 33696366 33696419 -86048479 + MIR SINE MIR 74 126 -82 213 132 0 0 chr13 33697815 33697853 -86047045 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 1882 135 4 4 chr13 33699839 33700154 -86044744 + AluSx SINE Alu 2 316 0 4813 85 27 3 chr13 33700374 33701046 -86043852 + LTR12 LTR ERV1 1 688 0 2532 292 96 46 chr13 33701181 33702230 -86042668 + L2 LINE L2 1294 2289 -1024 180 77 0 0 chr13 33702230 33702256 -86042642 + (TG)n Simple_repeat Simple_repeat 2 27 0 2532 292 96 46 chr13 33702256 33703112 -86041786 + L2 LINE L2 2289 3305 -8 2516 212 63 26 chr13 33703569 33704327 -86040571 + L1M4 LINE L1 2323 3108 -3038 2820 210 88 20 chr13 33704332 33704947 -86039951 - L1MB8 LINE L1 -207 5971 5399 2175 135 0 0 chr13 33704947 33705244 -86039654 + AluSx SINE Alu 1 297 -15 2820 210 88 20 chr13 33705244 33705701 -86039197 - L1MB8 LINE L1 -779 5399 4813 320 252 0 20 chr13 33705766 33705889 -86039009 + L1M4 LINE L1 2912 3030 -3116 4732 138 20 1 chr13 33706154 33706902 -86037996 - L1MC1 LINE L1 0 6333 5572 21 0 0 0 chr13 33706970 33706991 -86037907 + AT_rich Low_complexity Low_complexity 1 21 0 496 280 34 11 chr13 33707078 33707253 -86037645 + HAL1b LINE L1 521 699 -649 188 314 157 13 chr13 33707557 33707710 -86037188 + L2 LINE L2 3097 3271 -1 433 305 28 67 chr13 33709141 33709290 -86035608 + MIR3 SINE MIR 20 163 -45 532 261 30 0 chr13 33709538 33709672 -86035226 + MER117 DNA MER1_type 32 169 -28 857 261 49 53 chr13 33709952 33710155 -86034743 + MLT1J LTR MaLR 1 203 -308 2081 163 47 128 chr13 33710155 33710224 -86034674 + LTR48B LTR ERV1 1 74 -570 2014 135 3 7 chr13 33710224 33710520 -86034378 + AluSx SINE Alu 3 297 -15 270 0 0 0 chr13 33710520 33710550 -86034348 + (TA)n Simple_repeat Simple_repeat 2 31 0 2081 163 47 128 chr13 33710550 33711180 -86033718 + LTR48B LTR ERV1 72 644 0 857 261 49 53 chr13 33711180 33711260 -86033638 + MLT1J LTR MaLR 203 283 -228 252 280 50 10 chr13 33711290 33711390 -86033508 + MLT1J LTR MaLR 377 480 -31 1084 208 38 5 chr13 33711597 33711809 -86033089 + MER58A DNA MER1_type 6 224 0 1060 230 50 31 chr13 33712694 33713012 -86031886 + MER33 DNA MER1_type 1 324 0 3639 120 12 2 chr13 33713024 33713542 -86031356 + MER1A DNA MER1_type 5 527 0 739 144 14 7 chr13 33714153 33714292 -86030606 - L1MA6 LINE L1 -5 6295 6156 1819 156 4 0 chr13 33714698 33714974 -86029924 + AluJo SINE Alu 6 282 -30 1734 144 180 18 chr13 33716477 33716865 -86028033 + LTR47A LTR ERVL 2 452 0 1970 122 14 0 chr13 33716994 33717296 -86027602 - AluSg SINE Alu 0 306 1 352 309 41 0 chr13 33717298 33717395 -86027503 - L2 LINE L2 -8 3305 3205 800 215 13 0 chr13 33717547 33717705 -86027193 + FAM SINE Alu 5 164 -11 332 204 61 21 chr13 33717752 33717860 -86027038 + L1MD2 LINE L1 6243 7994 -1 1976 152 24 32 chr13 33717951 33718327 -86026571 - THE1C LTR MaLR 0 375 3 22 0 0 0 chr13 33718416 33718438 -86026460 + AT_rich Low_complexity Low_complexity 1 22 0 265 313 104 10 chr13 33719767 33719863 -86025035 + L2 LINE L2 3168 3272 0 345 295 26 19 chr13 33720353 33720509 -86024389 + L1MC4a LINE L1 5758 5914 -1894 27 0 0 0 chr13 33720640 33720667 -86024231 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 33721027 33721048 -86023850 + AT_rich Low_complexity Low_complexity 1 21 0 251 231 0 19 chr13 33721091 33721143 -86023755 + MIR SINE MIR 114 164 -98 222 37 0 0 chr13 33722368 33722395 -86022503 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1463 190 76 102 chr13 33723760 33724016 -86020882 - MER34B LTR ERV1 0 565 304 852 134 8 15 chr13 33724016 33724150 -86020748 + FLAM_C SINE Alu 1 133 0 1463 190 76 102 chr13 33724150 33724461 -86020437 - MER34B LTR ERV1 -261 304 13 1948 130 4 0 chr13 33724781 33725058 -86019840 - AluSx SINE Alu -34 278 1 216 0 0 0 chr13 33725501 33725525 -86019373 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 478 171 9 19 chr13 33725594 33725702 -86019196 + L1MA7 LINE L1 5914 6020 -280 312 180 0 67 chr13 33725711 33725800 -86019098 + L1MA7 LINE L1 6206 6288 -3 384 268 45 42 chr13 33726371 33726608 -86018290 - MER41B LTR ERV1 -209 426 55 500 255 243 31 chr13 33726682 33726941 -86017957 + L2 LINE L2 2999 3312 -1 1329 211 22 89 chr13 33727024 33727053 -86017845 + LTR37B LTR ERV1 10 39 -429 2584 196 30 13 chr13 33727053 33727593 -86017305 + MER44D DNA MER2_type 1 604 -1 1329 211 22 89 chr13 33727593 33728055 -86016843 + LTR37B LTR ERV1 39 468 0 222 128 0 0 chr13 33729038 33729077 -86015821 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 11996 132 36 7 chr13 33729086 33729129 -86015769 + Tigger1 DNA MER2_type 307 347 -2071 273 29 0 0 chr13 33729129 33729163 -86015735 + (TC)n Simple_repeat Simple_repeat 1 34 0 11996 132 36 7 chr13 33729163 33729772 -86015126 + Tigger1 DNA MER2_type 347 937 -1481 2020 144 0 22 chr13 33729772 33730085 -86014813 - AluSx SINE Alu -6 306 1 11996 132 36 7 chr13 33730085 33731484 -86013414 + Tigger1 DNA MER2_type 937 2418 0 775 138 36 0 chr13 33731680 33731818 -86013080 - Tigger1 DNA MER2_type -223 2195 2053 2277 113 3 0 chr13 33731854 33732154 -86012744 + AluSp SINE Alu 1 301 -12 21 57 0 0 chr13 33732375 33732410 -86012488 + AT_rich Low_complexity Low_complexity 1 35 0 2140 200 41 12 chr13 33732996 33733487 -86011411 - MLT1D LTR MaLR 0 505 1 25 0 0 0 chr13 33733659 33733684 -86011214 + AT_rich Low_complexity Low_complexity 1 25 0 1595 122 4 32 chr13 33733804 33733943 -86010955 + AluSq SINE Alu 1 132 -181 2198 125 0 0 chr13 33733943 33734246 -86010652 + AluSc SINE Alu 1 303 -6 1595 122 4 32 chr13 33734246 33734352 -86010546 + AluSq SINE Alu 132 239 -74 1982 147 26 3 chr13 33734450 33734756 -86010142 + AluSq SINE Alu 1 313 0 704 196 0 29 chr13 33735140 33735278 -86009620 + AluJo SINE Alu 1 134 -178 1014 226 47 28 chr13 33735838 33735897 -86009001 - LTR37A LTR ERV1 -22 404 348 1936 164 3 0 chr13 33735897 33736190 -86008708 + AluSq SINE Alu 1 294 -19 1014 226 47 28 chr13 33736190 33736489 -86008409 - LTR37A LTR ERV1 -78 348 39 2012 141 9 3 chr13 33736837 33737177 -86007721 - LTR35 LTR ERV1 0 618 277 1257 160 0 0 chr13 33737177 33737364 -86007534 + AluSg/x SINE Alu 100 286 -26 1739 103 0 73 chr13 33737371 33737435 -86007463 - LTR35 LTR ERV1 -339 279 212 2021 136 7 7 chr13 33737435 33737730 -86007168 + AluSx SINE Alu 1 295 -17 1739 103 0 73 chr13 33737730 33737966 -86006932 - LTR35 LTR ERV1 -406 212 1 2579 203 83 69 chr13 33739039 33739853 -86005045 + LTR1B LTR ERV1 1 826 0 271 348 76 50 chr13 33740417 33740877 -86004021 - L2 LINE L2 -411 2903 2432 1721 182 89 9 chr13 33741399 33741828 -86003070 + MER31A LTR ERV1 1 463 -22 2214 136 31 0 chr13 33741878 33742230 -86002668 + THE1B LTR MaLR 1 363 -1 8728 121 35 59 chr13 33742231 33743796 -86001102 + THE1B-int LTR MaLR 1 1527 -53 2132 142 40 6 chr13 33743815 33744167 -86000731 + THE1B LTR MaLR 1 364 0 28 0 0 0 chr13 33745221 33745249 -85999649 + AT_rich Low_complexity Low_complexity 1 28 0 328 161 7 129 chr13 33745458 33745550 -85999348 - LTR37A LTR ERV1 0 426 324 1769 173 0 7 chr13 33745550 33745839 -85999059 + AluJb SINE Alu 3 289 -23 328 161 7 129 chr13 33745839 33745868 -85999030 - LTR37A LTR ERV1 -102 324 324 1910 181 69 29 chr13 33745868 33746316 -85998582 + MER31B LTR ERV1 1 466 0 328 161 7 129 chr13 33746316 33746348 -85998550 - LTR37A LTR ERV1 -101 325 291 679 58 19 19 chr13 33746354 33746457 -85998441 + LTR7 LTR ERV1 346 448 -2 1390 99 9 0 chr13 33746459 33746682 -85998216 + HERVH LTR ERV1 1 225 -7488 * 15928 84 40 14 chr13 33746663 33749155 -85995743 + HERVH LTR ERV1 437 2995 -4718 936 120 7 0 chr13 33749134 33749284 -85995614 + HERVH LTR ERV1 3140 3290 -4423 * 998 142 0 6 chr13 33749274 33749436 -85995462 + HERVH LTR ERV1 3492 3652 -4061 * 4389 60 10 2 chr13 33749428 33750031 -85994867 + HERVH LTR ERV1 7106 7713 0 1333 172 55 69 chr13 33750031 33750449 -85994449 + LTR7 LTR ERV1 1 412 -38 235 175 0 35 chr13 33750567 33750624 -85994274 - LTR37A LTR ERV1 -288 138 84 1236 197 46 9 chr13 33750647 33750949 -85993949 - MER61A LTR ERV1 -37 306 1 304 196 0 0 chr13 33750971 33751027 -85993871 - LTR37A LTR ERV1 -363 63 8 28 0 0 0 chr13 33751321 33751349 -85993549 + AT_rich Low_complexity Low_complexity 1 28 0 910 246 92 46 chr13 33751632 33751788 -85993110 + MLT1A1 LTR MaLR 1 148 -217 198 71 0 0 chr13 33751788 33751816 -85993082 + (TCTCTG)n Simple_repeat Simple_repeat 2 29 0 910 246 92 46 chr13 33751816 33752008 -85992890 + MLT1A1 LTR MaLR 148 365 0 408 297 0 0 chr13 33752096 33752207 -85992691 - MIR SINE MIR -4 258 148 330 189 37 33 chr13 33752928 33753026 -85991872 - MER58 DNA MER1_type 0 2420 121 498 155 54 23 chr13 33753276 33753405 -85991493 + MER31-int LTR ERV1 1162 1294 -3642 464 127 155 56 chr13 33753453 33753595 -85991303 + MER31-int LTR ERV1 1291 1446 -3490 493 263 17 30 chr13 33753739 33753975 -85990923 + MER31-int LTR ERV1 1683 1915 -3021 2551 202 13 25 chr13 33754387 33754911 -85989987 - MLT2B1 LTR ERVL 0 520 3 2731 221 39 77 chr13 33756055 33757047 -85987851 + MER31-int LTR ERV1 3270 4224 -712 1381 187 8 0 chr13 33757062 33757329 -85987569 + MER49 LTR ERV1 15 283 -640 1331 258 6 9 chr13 33757389 33757711 -85987187 + MER4D LTR ERV1 551 871 -32 534 149 163 68 chr13 33757764 33757985 -85986913 + LTR37A LTR ERV1 4 245 -181 298 277 0 0 chr13 33758034 33758135 -85986763 + MER31-int LTR ERV1 4370 4470 -466 287 233 9 95 chr13 33758765 33758881 -85986017 + MER92B LTR ERV1 1 106 -530 413 116 14 0 chr13 33759055 33759124 -85985774 + MER92C LTR ERV1 485 554 0 1956 281 132 65 chr13 33759196 33761165 -85983733 - HAL1 LINE L1 -396 2111 10 762 139 90 0 chr13 33762323 33762445 -85982453 - FLAM_A SINE Alu 0 133 1 1787 206 125 22 chr13 33762615 33763197 -85981701 + LTR48B LTR ERV1 1 642 -2 258 32 0 0 chr13 33765303 33765334 -85979564 + (TA)n Simple_repeat Simple_repeat 1 31 0 1768 173 19 3 chr13 33765335 33765642 -85979256 - AluJo SINE Alu 0 312 1 1898 194 18 20 chr13 33765830 33766227 -85978671 - MSTD LTR MaLR 0 396 1 27 29 0 0 chr13 33766322 33766356 -85978542 + AT_rich Low_complexity Low_complexity 1 34 0 2499 110 0 24 chr13 33767110 33767483 -85977415 - THE1B LTR MaLR 0 364 1 1883 174 50 27 chr13 33767576 33768116 -85976782 - MLT2A2 LTR ERVL -2 552 1 248 305 42 0 chr13 33769391 33769509 -85975389 + (TA)n Simple_repeat Simple_repeat 2 124 0 616 220 38 27 chr13 33769509 33769695 -85975203 + MER112 DNA MER1_type 73 260 0 322 298 0 0 chr13 33770491 33770575 -85974323 + L2 LINE L2 3186 3269 -3 287 317 84 54 chr13 33770679 33771048 -85973850 + L2 LINE L2 2398 2777 -537 224 276 35 0 chr13 33771304 33771362 -85973536 - L2 LINE L2 -17 3296 3237 728 212 26 82 chr13 33771499 33771730 -85973168 + MER20 DNA MER1_type 2 219 0 3056 119 38 4 chr13 33771888 33772410 -85972488 - L1MB3 LINE L1 -10 6173 5634 381 301 78 19 chr13 33772410 33772616 -85972282 - L2 LINE L2 -7 3306 3089 255 297 0 0 chr13 33772740 33772804 -85972094 - MIR SINE MIR -149 113 50 1900 95 80 0 chr13 33772875 33773165 -85971733 - AluSp SINE Alu 0 311 1 239 283 0 0 chr13 33774025 33774078 -85970820 - L2 LINE L2 -10 3262 3210 456 291 10 0 chr13 33774403 33774506 -85970392 - L2 LINE L2 -33 3239 3136 277 301 90 32 chr13 33775489 33775645 -85969253 - MLT1K LTR MaLR -394 194 30 504 276 184 44 chr13 33776507 33776822 -85968076 - L2 LINE L2 -1634 1680 1322 2488 71 0 3 chr13 33777130 33777438 -85967460 - AluY SINE Alu -4 307 1 289 358 0 0 chr13 33777460 33777541 -85967357 + L2 LINE L2 3233 3313 0 21 36 0 0 chr13 33777716 33777744 -85967154 + AT_rich Low_complexity Low_complexity 1 28 0 2176 87 38 0 chr13 33778369 33778658 -85966240 - AluSc SINE Alu -9 300 1 25 65 0 0 chr13 33779184 33779230 -85965668 + AT_rich Low_complexity Low_complexity 1 46 0 2456 70 0 0 chr13 33779286 33779587 -85965311 + AluY SINE Alu 1 301 -10 14091 129 24 11 chr13 33782094 33784356 -85960542 + Tigger1 DNA MER2_type 39 2269 -149 279 0 0 0 chr13 33784356 33784387 -85960511 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2088 124 0 3 chr13 33784390 33784673 -85960225 - AluSx SINE Alu -30 282 1 14091 129 24 11 chr13 33784673 33784754 -85960144 + Tigger1 DNA MER2_type 2270 2418 0 3032 278 72 44 chr13 33784784 33785242 -85959656 - L2 LINE L2 0 3313 2869 613 67 11 0 chr13 33785242 33785331 -85959567 + L1PB2 LINE L1 6060 6149 -2 3032 278 72 44 chr13 33785331 33786310 -85958588 - L2 LINE L2 -444 2869 1836 671 292 118 32 chr13 33786348 33787203 -85957695 + L1ME3 LINE L1 4180 5108 -1038 442 256 11 11 chr13 33787214 33787394 -85957504 + GA-rich Low_complexity Low_complexity 1 180 0 324 200 29 19 chr13 33787407 33787512 -85957386 + GA-rich Low_complexity Low_complexity 2 107 0 1207 265 50 12 chr13 33787513 33788228 -85956670 + L1ME3 LINE L1 5122 5862 -300 1480 274 56 2 chr13 33788358 33788789 -85956109 - LTR16B LTR ERVL 0 464 11 1616 182 66 3 chr13 33789094 33789429 -85955469 + MSTA LTR MaLR 1 356 -72 2123 290 135 23 chr13 33789429 33790411 -85954487 - L2 LINE L2 -1687 1627 536 880 288 24 33 chr13 33790492 33790932 -85953966 - L1MC5 LINE L1 -44 7917 7551 405 0 0 0 chr13 33790932 33790977 -85953921 + (CA)n Simple_repeat Simple_repeat 2 46 0 880 288 24 33 chr13 33790977 33791266 -85953632 - L1MC5 LINE L1 -410 7551 7261 236 385 10 29 chr13 33792260 33792364 -85952534 + MER5B DNA MER1_type 15 116 -62 1293 201 8 13 chr13 33792823 33793062 -85951836 + MER8 DNA MER2_type 2 239 0 1135 130 0 0 chr13 33793065 33793226 -85951672 - AluSq SINE Alu -13 300 140 23 0 0 0 chr13 33793251 33793274 -85951624 + AT_rich Low_complexity Low_complexity 1 23 0 1763 96 50 27 chr13 33793817 33794078 -85950820 + AluSx SINE Alu 1 267 -45 1425 253 74 81 chr13 33794871 33795556 -85949342 + L2 LINE L2 2520 3200 -113 2177 159 68 27 chr13 33795556 33795965 -85948933 + MSTB LTR MaLR 1 426 0 1425 253 74 81 chr13 33795965 33796075 -85948823 + L2 LINE L2 3200 3309 -4 310 233 88 82 chr13 33796889 33797002 -85947896 + HAL1b LINE L1 981 1097 -251 2561 105 14 3 chr13 33797002 33797373 -85947525 + THE1C LTR MaLR 1 375 0 310 233 88 82 chr13 33797373 33797418 -85947480 + HAL1b LINE L1 1097 1140 -208 204 246 49 49 chr13 33798474 33798535 -85946363 + MIR SINE MIR 69 129 -133 1923 207 82 29 chr13 33798809 33799297 -85945601 - L1MA9 LINE L1 0 6312 5785 342 115 0 0 chr13 33799297 33799349 -85945549 + (TA)n Simple_repeat Simple_repeat 2 53 0 1923 207 82 29 chr13 33799349 33799455 -85945443 - L1MA9 LINE L1 -527 5785 5686 2551 156 57 2 chr13 33800242 33800698 -85944200 - MER31A LTR ERV1 0 485 5 273 340 7 0 chr13 33801904 33802051 -85942847 - MLT1G1-int LTR MaLR -1221 150 3 934 256 142 47 chr13 33802056 33802458 -85942440 - MLT1G1 LTR MaLR -2 593 114 678 324 17 7 chr13 33802459 33802876 -85942022 - L1M4 LINE L1 -1987 4159 3739 313 310 78 23 chr13 33802881 33803010 -85941888 + L2 LINE L2 3136 3271 -1 396 0 0 0 chr13 33803236 33803280 -85941618 + (CA)n Simple_repeat Simple_repeat 2 45 0 187 241 56 37 chr13 33804094 33804148 -85940750 + L2 LINE L2 3251 3305 -8 369 357 5 55 chr13 33804307 33804506 -85940392 + MIR SINE MIR 1 189 -73 310 0 67 0 chr13 33805559 33805604 -85939294 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1838 119 58 0 chr13 33805609 33805870 -85939028 - AluSx SINE Alu -36 276 1 262 197 121 0 chr13 33806646 33806712 -85938186 + MLT1L LTR MaLR 137 210 -405 3122 64 0 12 chr13 33806713 33807136 -85937762 + L1PA8A LINE L1 5686 6103 -28 954 265 90 24 chr13 33807162 33807539 -85937359 + MLT1L LTR MaLR 196 597 -18 714 283 188 14 chr13 33807550 33807843 -85937055 + L3 LINE CR1 421 764 -813 216 250 0 0 chr13 33808162 33808214 -85936684 + (TGAA)n Simple_repeat Simple_repeat 2 53 0 1673 143 130 69 chr13 33808449 33808749 -85936149 + MSTB LTR MaLR 27 356 -70 2370 91 0 3 chr13 33808749 33809056 -85935842 - AluSg SINE Alu 0 310 5 1673 143 130 69 chr13 33809056 33809132 -85935766 + MSTB LTR MaLR 356 426 0 21 36 0 0 chr13 33809816 33809844 -85935054 + AT_rich Low_complexity Low_complexity 1 28 0 1161 233 72 22 chr13 33810074 33810434 -85934464 + MLT1G LTR MaLR 10 387 -203 908 182 109 0 chr13 33810434 33810599 -85934299 - MER5A DNA MER1_type -4 185 3 255 266 13 51 chr13 33810631 33810710 -85934188 + MLT1G LTR MaLR 435 510 -80 576 266 128 44 chr13 33810974 33811200 -85933698 + MIR SINE MIR 7 251 -11 290 257 76 29 chr13 33811212 33811317 -85933581 + MIR SINE MIR 82 191 -71 2114 146 0 0 chr13 33811542 33811844 -85933054 + AluSq SINE Alu 1 302 -11 308 350 101 19 chr13 33812367 33812460 -85932438 + L1ME4a LINE L1 5022 5106 -1040 204 40 0 0 chr13 33812460 33812485 -85932413 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 308 350 101 19 chr13 33812485 33812648 -85932250 + L1ME4a LINE L1 5106 5299 -847 271 290 106 27 chr13 33812835 33813166 -85931732 + L1ME4a LINE L1 5548 5904 -217 418 244 38 23 chr13 33813191 33813322 -85931576 + MER117 DNA MER1_type 46 178 -19 258 32 0 0 chr13 33813392 33813423 -85931475 + (TG)n Simple_repeat Simple_repeat 2 32 0 1861 145 16 13 chr13 33813498 33813801 -85931097 - AluSx SINE Alu -8 304 1 982 234 51 74 chr13 33813822 33814380 -85930518 + MER39 LTR ERV1 1 707 0 345 296 54 48 chr13 33815002 33815188 -85929710 + MIR SINE MIR 33 219 -43 206 302 0 0 chr13 33817708 33817751 -85927147 - L2 LINE L2 -12 3301 3259 298 327 150 19 chr13 33817895 33818310 -85926588 - L2 LINE L2 -215 3057 2586 1036 346 129 32 chr13 33819090 33819880 -85925018 - L2 LINE L2 -696 2618 1752 2757 152 0 0 chr13 33819898 33820326 -85924572 - MSTC LTR MaLR 0 428 1 200 128 0 106 chr13 33820489 33820536 -85924362 + MIR SINE MIR 109 150 -112 344 263 113 44 chr13 33820801 33820961 -85923937 - MIR SINE MIR -71 191 21 201 94 0 0 chr13 33821392 33821424 -85923474 + (CTA)n Simple_repeat Simple_repeat 1 32 0 1176 183 55 126 chr13 33821507 33821927 -85922971 - MLT1B LTR MaLR 0 390 1 385 322 63 44 chr13 33821970 33822227 -85922671 + L1MEd LINE L1 997 1346 -1144 1469 155 3 94 chr13 33822746 33823084 -85921814 + AluJb SINE Alu 1 310 0 751 311 54 37 chr13 33823527 33824358 -85920540 + L1M4 LINE L1 3714 4558 -1588 1798 123 93 4 chr13 33824365 33824633 -85920265 + AluSx SINE Alu 1 292 -20 437 317 84 51 chr13 33824709 33825168 -85919730 + L1M2 LINE L1 4628 5116 -1030 2226 115 0 0 chr13 33825168 33825463 -85919435 + AluSq SINE Alu 9 303 -10 437 317 84 51 chr13 33825463 33825640 -85919258 + L1M2 LINE L1 5116 5286 -860 258 256 44 44 chr13 33825643 33825803 -85919095 + L1M2 LINE L1 5313 5472 -831 400 298 31 0 chr13 33825987 33826178 -85918720 + L1MC4a LINE L1 5694 5890 -1918 25 51 0 0 chr13 33826178 33826217 -85918681 + AT_rich Low_complexity Low_complexity 1 39 0 1009 167 154 14 chr13 33826257 33826478 -85918420 + AluJo SINE Alu 50 301 -11 305 329 169 41 chr13 33826534 33826878 -85918020 + L2 LINE L2 2926 3313 0 293 375 39 0 chr13 33827600 33827728 -85917170 - L2 LINE L2 0 3313 3181 653 257 36 85 chr13 33828064 33828395 -85916503 + MLT1K LTR MaLR 155 469 -119 25 0 0 0 chr13 33829781 33829806 -85915092 + AT_rich Low_complexity Low_complexity 1 25 0 352 227 242 0 chr13 33831373 33831505 -85913393 + MIR SINE MIR 72 235 -27 1544 202 0 17 chr13 33831741 33832033 -85912865 - AluJo SINE Alu -23 289 3 1723 130 14 51 chr13 33832081 33832373 -85912525 + AluJb SINE Alu 2 282 -30 2072 120 0 0 chr13 33832515 33832789 -85912109 + AluSx SINE Alu 6 279 -33 305 138 0 17 chr13 33832798 33832856 -85912042 + (GGGA)n Simple_repeat Simple_repeat 3 59 0 * 1167 88 18 9 chr13 33832842 33833171 -85911727 + (GAAA)n Simple_repeat Simple_repeat 1 333 0 215 143 41 0 chr13 33833160 33833209 -85911689 + GA-rich Low_complexity Low_complexity 3 53 0 * 333 301 183 20 chr13 33834360 33834513 -85910385 - MER5B DNA MER1_type 0 178 1 1038 191 4 71 chr13 33834643 33834868 -85910030 - MER58A DNA MER1_type -11 213 4 27 49 0 0 chr13 33834923 33834964 -85909934 + AT_rich Low_complexity Low_complexity 1 41 0 2324 103 0 0 chr13 33835019 33835310 -85909588 + AluSx SINE Alu 1 291 -21 22 0 0 0 chr13 33835314 33835336 -85909562 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 33835448 33835469 -85909429 + AT_rich Low_complexity Low_complexity 1 21 0 330 273 149 0 chr13 33835618 33835739 -85909159 - MER117 DNA MER1_type -57 140 2 655 241 189 40 chr13 33836181 33836430 -85908468 - MLT1H LTR MaLR -193 356 71 314 327 29 27 chr13 33836955 33837108 -85907790 - MIR3 SINE MIR -55 153 15 298 242 0 0 chr13 33837174 33837236 -85907662 - MER58A DNA MER1_type 0 224 163 * 635 292 15 15 chr13 33837235 33837437 -85907461 - MER58A DNA MER1_type -20 204 3 325 290 98 63 chr13 33837466 33837561 -85907337 + MLT1H LTR MaLR 24 114 -435 1837 159 27 71 chr13 33837561 33837969 -85906929 + MLT1B LTR MaLR 1 390 0 325 290 98 63 chr13 33837969 33838269 -85906629 + MLT1H LTR MaLR 114 546 -3 309 26 0 0 chr13 33838717 33838755 -85906143 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1310 146 84 62 chr13 33838755 33839029 -85905869 - AluJo SINE Alu -32 280 1 1963 177 101 30 chr13 33839124 33839254 -85905644 + MER77 LTR ERV1 182 301 -304 2065 138 0 20 chr13 33839254 33839558 -85905340 + AluY SINE Alu 1 298 -13 1963 177 101 30 chr13 33839558 33839823 -85905075 + MER77 LTR ERV1 301 605 0 374 322 47 13 chr13 33840132 33840281 -85904617 + MIR SINE MIR 50 203 -59 22 35 0 0 chr13 33841034 33841063 -85903835 + AT_rich Low_complexity Low_complexity 1 29 0 1673 166 43 0 chr13 33841068 33841346 -85903552 + AluJo SINE Alu 1 290 -22 22 0 0 0 chr13 33841347 33841369 -85903529 + AT_rich Low_complexity Low_complexity 1 22 0 939 191 0 0 chr13 33841471 33841647 -85903251 - AluSg/x SINE Alu 0 308 133 2294 101 0 3 chr13 33841647 33841944 -85902954 - AluSq SINE Alu -17 296 1 225 0 0 0 chr13 33842534 33842559 -85902339 + (T)n Simple_repeat Simple_repeat 1 25 0 216 234 146 135 chr13 33842676 33842721 -85902177 - MIR3 SINE MIR -12 196 153 2146 109 24 0 chr13 33842721 33843039 -85901859 + AluSq SINE Alu 1 313 0 216 234 146 135 chr13 33843039 33843185 -85901713 - MIR3 SINE MIR -55 153 3 185 129 0 32 chr13 33843348 33843379 -85901519 - MER5A DNA MER1_type -116 73 44 235 121 0 0 chr13 33844031 33844064 -85900834 + Alu SINE Alu 1 33 -268 207 0 0 0 chr13 33844075 33844098 -85900800 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1990 125 3 26 chr13 33844127 33844432 -85900466 + AluSx SINE Alu 1 298 -14 1533 139 132 0 chr13 33844595 33844853 -85900045 + AluSx SINE Alu 5 296 -16 32 67 0 0 chr13 33844853 33844913 -85899985 + AT_rich Low_complexity Low_complexity 1 60 0 2417 46 0 0 chr13 33845827 33846155 -85898743 - AluY SINE Alu 0 328 1 300 256 25 13 chr13 33848010 33848117 -85896781 - L2 LINE L2 -281 2991 2883 297 0 0 0 chr13 33848185 33848218 -85896680 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2918 26 0 0 chr13 33848223 33848564 -85896334 - L1PA3 LINE L1 0 6155 5815 630 326 42 24 chr13 33849096 33849352 -85895546 - MER102b DNA MER1_type -1088 340 75 243 0 0 0 chr13 33849352 33849379 -85895519 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 630 326 42 24 chr13 33849379 33849456 -85895442 - MER102b DNA MER1_type -1353 75 1 399 275 37 0 chr13 33849539 33849648 -85895250 + MER117 DNA MER1_type 1 113 -84 1373 189 126 31 chr13 33850762 33851143 -85893755 + LTR37A LTR ERV1 8 424 -2 218 279 12 47 chr13 33852038 33852124 -85892774 - L2 LINE L2 -74 3198 3116 2466 194 59 2 chr13 33853053 33853544 -85891354 + LTR53 LTR ERVL 1 519 0 493 299 150 71 chr13 33854164 33855189 -85889709 + L2 LINE L2 1700 2805 -509 604 239 90 7 chr13 33855220 33855375 -85889523 + MIR SINE MIR 75 242 -20 810 174 155 0 chr13 33855377 33855532 -85889366 - AluJb SINE Alu -1 311 133 264 30 0 0 chr13 33855535 33855568 -85889330 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 690 174 0 33 chr13 33855570 33855754 -85889144 + CT-rich Low_complexity Low_complexity 3 180 0 5819 155 8 4 chr13 33855884 33857116 -85887782 + L1M1 LINE L1 4303 5538 -743 5998 112 12 8 chr13 33857122 33858091 -85886807 + L1PA14 LINE L1 5182 6152 -9 277 308 10 10 chr13 33858091 33858195 -85886703 + MIR SINE MIR 158 261 -1 400 226 140 43 chr13 33859158 33859322 -85885576 - MIR SINE MIR -77 185 6 226 399 59 20 chr13 33860297 33860450 -85884448 + L2 LINE L2 2933 3091 -181 31 26 0 0 chr13 33860710 33860748 -85884150 + AT_rich Low_complexity Low_complexity 1 38 0 1408 199 24 3 chr13 33860751 33861047 -85883851 + L1MB4 LINE L1 5787 6088 -92 * 2568 246 56 13 chr13 33861045 33862886 -85882012 + L1MD2 LINE L1 4101 6082 -277 562 150 39 0 chr13 33862934 33863061 -85881837 + Charlie5 DNA MER1_type 2454 2585 -27 1953 134 70 22 chr13 33863397 33863755 -85881143 - THE1C LTR MaLR 0 375 1 2952 168 28 20 chr13 33864123 33865020 -85879878 + L1P4 LINE L1 4697 5609 -557 1742 176 0 28 chr13 33865020 33865348 -85879550 - AluSx SINE Alu 0 320 1 2952 168 28 20 chr13 33865348 33865497 -85879401 + L1P4 LINE L1 5609 5755 -411 299 247 59 12 chr13 33867280 33867365 -85877533 - MIR SINE MIR -10 252 164 * 430 256 196 25 chr13 33867356 33867555 -85877343 + MIR SINE MIR 30 262 0 360 273 73 69 chr13 33867591 33867866 -85877032 + MARNA DNA Mariner 32 307 -279 225 323 65 0 chr13 33868666 33868728 -85876170 - L2 LINE L2 -3 3310 3245 287 384 100 26 chr13 33870871 33871290 -85873608 + L2 LINE L2 2347 2796 -518 244 230 40 80 chr13 33871605 33871705 -85873193 + L2 LINE L2 3177 3272 0 436 286 52 11 chr13 33871819 33871995 -85872903 - MIR SINE MIR -31 231 45 196 296 37 0 chr13 33872016 33872070 -85872828 + L2 LINE L2 3213 3268 -4 2330 107 0 0 chr13 33872658 33872968 -85871930 - AluSx SINE Alu -2 310 1 272 315 149 31 chr13 33873506 33873728 -85871170 + L2 LINE L2 3019 3266 -47 23 0 0 0 chr13 33874010 33874033 -85870865 + AT_rich Low_complexity Low_complexity 1 23 0 893 268 172 27 chr13 33874466 33875036 -85869862 - L2 LINE L2 -126 3187 2536 556 215 23 105 chr13 33875352 33875571 -85869327 + MER58C DNA MER1_type 3 203 -12 21 0 0 0 chr13 33876588 33876609 -85868289 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 33876630 33876658 -85868240 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr13 33877786 33877808 -85867090 + (GA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr13 33878716 33878737 -85866161 + AT_rich Low_complexity Low_complexity 1 21 0 494 299 35 15 chr13 33879757 33879954 -85864944 + L1ME LINE L1 138 338 -5867 930 261 94 36 chr13 33880045 33880785 -85864113 + L1ME LINE L1 830 1588 -4627 1922 276 81 53 chr13 33881209 33882374 -85862524 - L2 LINE L2 0 3313 2023 2011 170 18 30 chr13 33882603 33882998 -85861900 + MLT1B LTR MaLR 1 390 0 519 304 60 57 chr13 33883105 33883703 -85861195 - HAL1b LINE L1 -689 659 60 24 32 0 0 chr13 33883709 33883740 -85861158 + AT_rich Low_complexity Low_complexity 1 31 0 2373 241 81 29 chr13 33883802 33883992 -85860906 - L1MEc LINE L1 -3255 2960 2781 1710 177 3 7 chr13 33883992 33884286 -85860612 - AluJo SINE Alu -19 293 1 2373 241 81 29 chr13 33884286 33885314 -85859584 - L1MEc LINE L1 -3434 2781 1734 759 242 0 25 chr13 33885456 33885654 -85859244 - L1MB7 LINE L1 -8 6176 5984 1559 177 7 18 chr13 33885772 33886049 -85858849 - AluJo SINE Alu -24 288 15 898 231 136 8 chr13 33886754 33887005 -85857893 + MER102a DNA MER1_type 43 325 -5 228 386 20 0 chr13 33887005 33887106 -85857792 - MIR3 SINE MIR -48 160 58 181 321 60 24 chr13 33887187 33887271 -85857627 + MIR SINE MIR 103 189 -73 1939 134 0 11 chr13 33890568 33890888 -85854010 - AluSx SINE Alu 0 317 1 1615 183 3 7 chr13 33891684 33891973 -85852925 + AluJb SINE Alu 1 288 -24 213 382 10 10 chr13 33892078 33892180 -85852718 + MIR SINE MIR 11 112 -150 184 212 0 0 chr13 33892669 33892702 -85852196 - MIR SINE MIR -12 250 218 923 286 29 26 chr13 33892707 33893056 -85851842 - L1MA9 LINE L1 -25 6287 5938 461 286 9 0 chr13 33893090 33893202 -85851696 - MIR SINE MIR -140 122 10 303 330 70 35 chr13 33893115 33893345 -85851553 + MIR SINE MIR 15 252 -10 * 21 36 0 0 chr13 33894118 33894146 -85850752 + AT_rich Low_complexity Low_complexity 1 28 0 374 337 102 76 chr13 33895253 33895793 -85849105 + L2 LINE L2 2220 2773 -541 439 304 123 27 chr13 33896303 33896596 -85848302 - MLT1I LTR MaLR -9 400 80 2035 93 0 0 chr13 33896803 33897072 -85847826 + AluSc SINE Alu 36 304 -5 530 148 42 28 chr13 33899805 33899947 -85844951 - L1MA4A LINE L1 -3 6300 6157 7286 39 1 0 chr13 33899947 33901389 -85843509 - L1PA4 LINE L1 -4 6151 4709 23371 40 13 2 chr13 33901389 33904312 -85840586 + L1PA4 LINE L1 1741 4696 -1450 1307 186 4 0 chr13 33904312 33904565 -85840333 - L1MA4A LINE L1 -136 6167 5914 2897 156 21 2 chr13 33904567 33905248 -85839650 - L1MA4A LINE L1 -530 5773 5082 274 279 0 0 chr13 33905250 33905329 -85839569 + L1MA4A LINE L1 5021 5099 -1047 30 0 0 0 chr13 33905329 33905359 -85839539 + AT_rich Low_complexity Low_complexity 1 30 0 7776 15 0 0 chr13 33906701 33908119 -85836779 + L1PA2 LINE L1 4757 6174 0 306 279 22 59 chr13 33908761 33908897 -85836001 + L1ME1 LINE L1 6 136 -5934 3186 250 75 24 chr13 33909460 33911374 -85833524 + L1ME1 LINE L1 4061 6076 -24 21 36 0 0 chr13 33911377 33911405 -85833493 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr13 33912752 33912796 -85832102 + AT_rich Low_complexity Low_complexity 1 44 0 34 84 0 0 chr13 33913313 33913396 -85831502 + AT_rich Low_complexity Low_complexity 1 83 0 22 70 0 0 chr13 33916610 33916653 -85828245 + AT_rich Low_complexity Low_complexity 1 43 0 1089 247 51 8 chr13 33916701 33916956 -85827942 + Tigger7 DNA MER2_type 2 267 -466 259 160 20 0 chr13 33916970 33917020 -85827878 + Tigger7 DNA MER2_type 2537 2587 0 1118 123 0 23 chr13 33917052 33917223 -85827675 - AluSg/x SINE Alu -12 298 132 2290 86 0 7 chr13 33917225 33917526 -85827372 - AluY SINE Alu -12 299 1 440 162 30 0 chr13 33918141 33918240 -85826658 + L1MB5 LINE L1 5743 5844 -330 273 252 35 48 chr13 33918711 33918854 -85826044 - L1ME LINE L1 -674 5488 5352 2937 202 40 38 chr13 33918864 33919677 -85825221 - L1MB7 LINE L1 -162 6022 5207 1064 277 101 48 chr13 33919683 33920667 -85824231 - L1M LINE L1 -733 5429 4310 259 86 0 0 chr13 33920667 33920702 -85824196 - U2 snRNA snRNA -153 35 1 1064 277 101 48 chr13 33920702 33921231 -85823667 - L1M LINE L1 -1852 4310 3810 906 321 176 29 chr13 33921231 33922508 -85822390 + L2 LINE L2 1820 3305 -8 707 305 60 4 chr13 33922973 33923317 -85821581 - LTR33 LTR ERVL -2 519 102 359 306 52 8 chr13 33923393 33923527 -85821371 - MLT1L LTR MaLR -112 503 364 204 330 85 0 chr13 33923944 33924038 -85820860 - L3 LINE CR1 -157 1420 1319 22 0 0 0 chr13 33924319 33924341 -85820557 + AT_rich Low_complexity Low_complexity 1 22 0 234 318 32 86 chr13 33925564 33925784 -85819114 + L2 LINE L2 3105 3312 -1 592 251 141 31 chr13 33926422 33926713 -85818185 - MER33 DNA MER1_type -1 323 1 228 287 32 32 chr13 33926804 33926898 -85818000 - L2 LINE L2 -1081 2233 2140 27 62 0 0 chr13 33927848 33927896 -85817002 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr13 33928060 33928082 -85816816 + AT_rich Low_complexity Low_complexity 1 22 0 1395 6 0 0 chr13 33928083 33928241 -85816657 - L1HS LINE L1 -1 6154 5997 440 83 0 0 chr13 33928236 33928296 -85816602 + L1P LINE L1 5349 5408 -747 * 37 69 0 0 chr13 33928532 33928604 -85816294 + AT_rich Low_complexity Low_complexity 1 72 0 30 0 0 0 chr13 33928659 33928689 -85816209 + AT_rich Low_complexity Low_complexity 1 30 0 292 273 50 8 chr13 33929462 33929583 -85815315 - L1ME4a LINE L1 -49 6072 5947 2065 78 0 4 chr13 33929935 33930204 -85814694 - AluY SINE Alu -4 307 40 218 274 292 0 chr13 33930471 33930584 -85814314 - MIR SINE MIR -111 151 6 3473 209 49 59 chr13 33930627 33931615 -85813283 - L1MD3 LINE L1 -6 8028 7065 462 36 0 0 chr13 33931615 33931671 -85813227 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 3473 209 49 59 chr13 33931671 33931713 -85813185 - L1MD3 LINE L1 -969 7065 7024 905 224 52 9 chr13 33931719 33931929 -85812969 - MER58A DNA MER1_type -5 219 1 1613 235 145 0 chr13 33931939 33932429 -85812469 - L1MC4 LINE L1 -1037 7005 6445 23 86 0 0 chr13 33932798 33932856 -85812042 + AT_rich Low_complexity Low_complexity 1 58 0 28 48 0 0 chr13 33933344 33933386 -85811512 + AT_rich Low_complexity Low_complexity 1 42 0 500 256 49 79 chr13 33933780 33933983 -85810915 - MIR SINE MIR 0 262 66 282 275 84 42 chr13 33934301 33934443 -85810455 + L1ME3A LINE L1 6018 6165 -5 31 68 0 0 chr13 33934798 33934857 -85810041 + AT_rich Low_complexity Low_complexity 1 59 0 34 65 0 0 chr13 33935291 33935353 -85809545 + AT_rich Low_complexity Low_complexity 1 62 0 31 26 0 0 chr13 33935524 33935562 -85809336 + AT_rich Low_complexity Low_complexity 1 38 0 38 51 0 0 chr13 33936197 33936256 -85808642 + AT_rich Low_complexity Low_complexity 1 59 0 238 355 90 37 chr13 33936825 33937146 -85807752 - L2 LINE L2 -466 2848 2511 2313 68 0 36 chr13 33937611 33937918 -85806980 - AluY SINE Alu -15 296 1 293 213 67 27 chr13 33937936 33938011 -85806887 + MER116 DNA Mariner 3 80 0 186 417 32 6 chr13 33938070 33938226 -85806672 + L3 LINE CR1 617 776 -801 1725 160 20 23 chr13 33939130 33939436 -85805462 - AluSx SINE Alu -7 305 1 4159 34 2 0 chr13 33940257 33940757 -85804141 + L1PA5 LINE L1 5650 6150 -4 696 189 0 23 chr13 33941042 33941174 -85803724 + AluSq/x SINE Alu 5 133 -180 22 70 0 0 chr13 33941464 33941507 -85803391 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr13 33941743 33941776 -85803122 + AT_rich Low_complexity Low_complexity 1 33 0 268 214 0 78 chr13 33942506 33942609 -85802289 - L1MC4 LINE L1 -1334 6708 6614 232 250 0 48 chr13 33942539 33942623 -85802275 + L1MC4 LINE L1 6624 6703 -1339 * 239 315 0 0 chr13 33942625 33942717 -85802181 - L1MC4 LINE L1 -1335 6707 6616 * 306 208 0 62 chr13 33942643 33942739 -85802159 + L1MC4 LINE L1 6614 6703 -1339 225 287 0 43 chr13 33942757 33942851 -85802047 + L1MC4 LINE L1 6614 6703 -1339 330 26 0 0 chr13 33943851 33943890 -85801008 + (CATA)n Simple_repeat Simple_repeat 2 40 0 589 155 19 0 chr13 33943927 33944030 -85800868 + FLAM_A SINE Alu 24 128 -14 1783 126 69 39 chr13 33944053 33944417 -85800481 + THE1C LTR MaLR 1 375 0 2156 100 0 10 chr13 33944666 33944965 -85799933 + AluSg SINE Alu 1 296 -14 474 278 114 13 chr13 33945356 33945583 -85799315 + HAL1b LINE L1 599 848 -500 392 312 21 64 chr13 33945982 33946115 -85798783 + L1M4 LINE L1 2189 2309 -3837 1302 43 0 0 chr13 33946115 33946278 -85798620 + L1PA3 LINE L1 5993 6155 0 392 312 21 64 chr13 33946278 33946378 -85798520 + L1M4 LINE L1 2309 2412 -3734 1418 84 133 0 chr13 33947023 33947248 -85797650 + L1PA4 LINE L1 5896 6150 -5 450 226 23 15 chr13 33947275 33947408 -85797490 + L1ME2 LINE L1 27 160 -5959 714 264 67 17 chr13 33947468 33947813 -85797085 + L1ME2 LINE L1 892 1253 -4866 23 33 0 0 chr13 33947895 33947925 -85796973 + AT_rich Low_complexity Low_complexity 1 30 0 907 130 34 0 chr13 33948128 33948274 -85796624 + L1MC1 LINE L1 6182 6332 -1 24 0 0 0 chr13 33948463 33948487 -85796411 + AT_rich Low_complexity Low_complexity 1 24 0 278 268 102 19 chr13 33948731 33949048 -85795850 + L1ME2 LINE L1 2662 3014 -3115 452 331 91 15 chr13 33949376 33949705 -85795193 + L1ME2 LINE L1 3756 4109 -2020 734 259 83 30 chr13 33949715 33950016 -85794882 + L1MB7 LINE L1 2644 2960 -3186 1845 241 118 7 chr13 33950027 33950174 -85794724 + L1MB7 LINE L1 5522 5651 -533 1975 136 0 7 chr13 33950174 33950489 -85794409 - AluSx SINE Alu 0 313 1 1845 241 118 7 chr13 33950489 33950925 -85793973 + L1MB7 LINE L1 5651 6171 -13 883 274 126 29 chr13 33950930 33951783 -85793115 + L1ME2 LINE L1 4993 5937 -288 344 339 95 29 chr13 33952097 33952611 -85792287 + L1ME4a LINE L1 2372 2919 -3210 305 322 89 23 chr13 33953482 33953696 -85791202 + L1ME4a LINE L1 4462 4689 -1440 1674 230 130 54 chr13 33954516 33955198 -85789700 + HAL1b LINE L1 256 1033 -315 2148 102 0 0 chr13 33955198 33955493 -85789405 + AluY SINE Alu 1 295 -16 1674 230 130 54 chr13 33955493 33955769 -85789129 + HAL1b LINE L1 1033 1287 -61 397 272 124 54 chr13 33956254 33956489 -85788409 + L1ME4a LINE L1 5508 5725 -379 2115 133 0 0 chr13 33956489 33956789 -85788109 - AluSx SINE Alu -12 300 1 397 272 124 54 chr13 33956789 33957086 -85787812 + L1ME4a LINE L1 5725 6077 -27 2232 125 0 0 chr13 33957087 33957392 -85787506 - AluSx SINE Alu -6 306 2 252 0 0 0 chr13 33957777 33957805 -85787093 + (T)n Simple_repeat Simple_repeat 1 28 0 1411 183 47 14 chr13 33958066 33958345 -85786553 - AluJo SINE Alu -14 288 1 986 311 101 24 chr13 33958793 33959211 -85785687 - MLT1J2 LTR MaLR 0 450 1 2266 104 7 0 chr13 33959290 33959597 -85785301 - AluSg SINE Alu -1 309 1 24 0 0 0 chr13 33960557 33960581 -85784317 + AT_rich Low_complexity Low_complexity 1 24 0 364 341 42 47 chr13 33960871 33961085 -85783813 - L3 LINE CR1 -57 1520 1308 2174 233 103 15 chr13 33961100 33961714 -85783184 + Cheshire DNA MER1_type 40 707 -1713 877 107 0 129 chr13 33961775 33961953 -85782945 + AluJb SINE Alu 157 311 -1 381 284 115 7 chr13 33961993 33962141 -85782757 + MER58B DNA MER1_type 22 185 -156 2315 160 8 15 chr13 33962165 33962564 -85782334 - MER41E LTR ERV1 -116 396 1 1482 249 65 27 chr13 33962653 33963174 -85781724 - MER41E-int LTR ERV1 -1 6675 6135 1006 350 34 27 chr13 33963196 33964012 -85780886 - HUERS-P3 LTR ERV1 -3720 4036 3215 260 176 20 0 chr13 33964570 33964621 -85780277 - HUERS-P3 LTR ERV1 -2803 2151 2100 1055 295 35 47 chr13 33964745 33965363 -85779535 - HUERS-P3 LTR ERV1 -3958 2718 1854 260 267 89 52 chr13 33965449 33965584 -85779314 - HUERS-P3 LTR ERV1 -6036 1720 1581 335 309 0 16 chr13 33965850 33965973 -85778925 - HUERS-P3 LTR ERV1 -7114 1805 1685 1300 151 41 5 chr13 33966103 33966322 -85778576 - MER41E LTR ERV1 0 512 286 468 240 147 7 chr13 33966322 33966472 -85778426 + MER58B DNA MER1_type 171 341 0 1135 167 52 0 chr13 33966772 33966982 -85777916 - MER58A DNA MER1_type -3 221 1 300 383 29 40 chr13 33967042 33967319 -85777579 - L3 LINE CR1 -304 1273 1000 296 356 92 0 chr13 33967326 33967500 -85777398 - MIR SINE MIR -1 261 72 244 333 108 0 chr13 33967988 33968099 -85776799 + L1MD3 LINE L1 6722 6844 -1151 342 0 0 0 chr13 33968827 33968865 -85776033 + (AGTAG)n Simple_repeat Simple_repeat 1 38 0 1886 157 13 7 chr13 33968867 33969173 -85775725 + AluSx SINE Alu 1 308 -4 2347 80 3 0 chr13 33969295 33969595 -85775303 + AluSp SINE Alu 1 301 -12 284 314 78 0 chr13 33970329 33970431 -85774467 - MIR3 SINE MIR -7 201 92 560 154 0 0 chr13 33970775 33970866 -85774032 + MER33 DNA MER1_type 19 109 -215 2388 67 17 3 chr13 33971067 33971366 -85773532 - AluY SINE Alu -8 303 1 222 342 18 45 chr13 33971616 33971727 -85773171 - MIR SINE MIR -46 216 109 276 226 36 24 chr13 33971999 33972083 -85772815 + MER117 DNA MER1_type 10 94 -103 424 295 85 8 chr13 33972608 33972737 -85772161 - L2 LINE L2 0 3313 3175 1677 169 3 22 chr13 33972877 33973191 -85771707 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr13 33973294 33973315 -85771583 + AT_rich Low_complexity Low_complexity 1 21 0 2093 127 13 3 chr13 33973374 33973673 -85771225 + AluSp SINE Alu 1 302 -11 27 0 0 0 chr13 33974402 33974429 -85770469 + AT_rich Low_complexity Low_complexity 1 27 0 241 287 200 7 chr13 33974694 33974844 -85770054 - L2 LINE L2 -8 3305 3127 262 318 12 0 chr13 33975446 33975531 -85769367 - MIR3 SINE MIR -11 197 112 807 249 31 0 chr13 33975999 33976192 -85768706 - MER58A DNA MER1_type -23 201 3 212 204 21 129 chr13 33976196 33976289 -85768609 + MIR3 SINE MIR 113 195 -13 569 205 99 33 chr13 33978240 33978391 -85766507 + MIR3 SINE MIR 47 207 -1 426 191 117 0 chr13 33978542 33978636 -85766262 - MIR SINE MIR -6 256 152 295 222 0 20 chr13 33980561 33980660 -85764238 + CT-rich Low_complexity Low_complexity 2 98 0 430 331 39 39 chr13 33980664 33980924 -85763974 - MLT1L LTR MaLR -355 260 1 1372 149 141 4 chr13 33981404 33981666 -85763232 + AluJo SINE Alu 1 298 -14 28 0 0 0 chr13 33982257 33982285 -85762613 + AT_rich Low_complexity Low_complexity 1 28 0 2096 142 7 0 chr13 33983707 33984017 -85760881 - AluSx SINE Alu 0 312 1 600 243 7 7 chr13 33985144 33985280 -85759618 - MER58B DNA MER1_type 0 341 206 37 81 0 0 chr13 33986883 33986969 -85757929 + AT_rich Low_complexity Low_complexity 1 86 0 21 36 0 0 chr13 33987323 33987351 -85757547 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 33988395 33988418 -85756480 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 33989178 33989200 -85755698 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr13 33989619 33989664 -85755234 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr13 33990488 33990511 -85754387 + AT_rich Low_complexity Low_complexity 1 23 0 963 256 27 16 chr13 33990663 33990921 -85753977 - MIR SINE MIR 0 262 2 30 59 0 0 chr13 33991118 33991169 -85753729 + AT_rich Low_complexity Low_complexity 1 51 0 244 314 148 30 chr13 33991708 33991877 -85753021 + MIR SINE MIR 4 192 -70 325 387 46 29 chr13 33992123 33992361 -85752537 + L2 LINE L2 2813 3054 -218 2274 92 3 0 chr13 33992830 33993123 -85751775 - AluSc SINE Alu -15 294 1 546 307 56 30 chr13 33993161 33993392 -85751506 + MIR SINE MIR 20 256 -6 317 344 104 11 chr13 33994038 33994221 -85750677 - MIR SINE MIR -61 201 2 24 0 0 0 chr13 33995874 33995898 -85749000 + AT_rich Low_complexity Low_complexity 1 24 0 543 282 75 32 chr13 33996380 33996756 -85748142 + L1ME4a LINE L1 5726 6117 -4 274 319 89 22 chr13 33997158 33997293 -85747605 + MIR SINE MIR 8 151 -111 207 88 0 0 chr13 33997565 33997599 -85747299 + (A)n Simple_repeat Simple_repeat 1 34 0 265 236 14 42 chr13 33997700 33997772 -85747126 - L2 LINE L2 0 3313 3244 258 323 93 52 chr13 33998457 33998705 -85746193 - L3 LINE CR1 -301 1276 1019 5734 122 28 12 chr13 33998713 33999793 -85745105 - L1PB1 LINE L1 -3 6148 5053 589 329 108 23 chr13 33999802 34000155 -85744743 - L3 LINE CR1 -577 1000 618 35 41 0 0 chr13 34000215 34000264 -85744634 + AT_rich Low_complexity Low_complexity 1 49 0 1094 285 44 17 chr13 34002362 34002882 -85742016 + L1MEc LINE L1 582 1115 -5281 990 203 87 87 chr13 34002888 34003339 -85741559 + MLT1E3 LTR MaLR 7 452 -172 1901 153 0 3 chr13 34004056 34004350 -85740548 + AluJo SINE Alu 1 293 -19 184 171 24 0 chr13 34004953 34004994 -85739904 + MER5C DNA MER1_type 119 160 -164 21 0 0 0 chr13 34005093 34005114 -85739784 + AT_rich Low_complexity Low_complexity 1 21 0 228 189 56 22 chr13 34005457 34005547 -85739351 + (TATAA)n Simple_repeat Simple_repeat 5 97 0 488 343 163 6 chr13 34005637 34006163 -85738735 + L2 LINE L2 2602 3215 -98 4862 161 54 12 chr13 34006187 34006941 -85737957 - L1MA8 LINE L1 -29 6262 5459 2021 131 3 6 chr13 34006941 34007253 -85737645 - AluSx SINE Alu -1 311 1 4862 161 54 12 chr13 34007253 34007490 -85737408 - L1MA8 LINE L1 -832 5459 5233 29 0 0 0 chr13 34007660 34007689 -85737209 + AT_rich Low_complexity Low_complexity 1 29 0 6063 211 70 30 chr13 34007818 34009395 -85735503 + L1M4 LINE L1 61 1700 -4842 203 175 0 0 chr13 34011092 34011132 -85733766 + T-rich Low_complexity Low_complexity 2 41 0 346 364 99 20 chr13 34012140 34012434 -85732464 - L3 LINE CR1 -877 700 384 184 286 0 18 chr13 34012508 34012564 -85732334 - MIR3 SINE MIR -31 177 123 212 271 83 90 chr13 34012595 34012728 -85732170 - MIR SINE MIR -3 259 128 2149 124 7 0 chr13 34013425 34013731 -85731167 - AluSq SINE Alu -5 308 1 282 376 27 32 chr13 34014542 34014728 -85730170 + MIR3 SINE MIR 22 206 -2 2031 86 54 0 chr13 34015554 34015834 -85729064 - AluSg1 SINE Alu -14 295 1 213 261 31 0 chr13 34016241 34016306 -85728592 + (TATG)n Simple_repeat Simple_repeat 2 68 0 348 390 6 17 chr13 34019584 34019761 -85725137 + MIR3 SINE MIR 21 195 -13 2128 287 91 11 chr13 34020606 34021686 -85723212 + L2 LINE L2 2099 3313 0 1833 147 22 0 chr13 34022024 34022296 -85722602 + Charlie3 DNA MER1_type 1 278 -2432 2599 78 6 14 chr13 34022296 34022654 -85722244 - THE1A LTR MaLR 0 355 1 738 333 111 8 chr13 34023417 34023768 -85721130 - L3 LINE CR1 -238 1339 953 381 286 48 39 chr13 34023775 34024046 -85720852 - MIR SINE MIR -2 260 24 220 426 0 0 chr13 34024284 34024399 -85720499 - L3 LINE CR1 -978 599 485 2080 136 7 0 chr13 34025975 34026283 -85718615 + AluSx SINE Alu 3 312 0 24 0 0 0 chr13 34026604 34026628 -85718270 + AT_rich Low_complexity Low_complexity 1 24 0 249 33 0 0 chr13 34028312 34028342 -85716556 + (TG)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chr13 34029026 34029054 -85715844 + AT_rich Low_complexity Low_complexity 1 28 0 2011 116 0 17 chr13 34029567 34029861 -85715037 + AluSx SINE Alu 1 289 -23 234 0 0 0 chr13 34030035 34030061 -85714837 + (CA)n Simple_repeat Simple_repeat 2 27 0 1888 262 99 36 chr13 34030075 34031725 -85713173 - L1ME3A LINE L1 -8 6162 4409 2480 252 38 18 chr13 34031803 34032562 -85712336 - L1ME1 LINE L1 -28 6207 5434 859 232 84 48 chr13 34032590 34033441 -85711457 - L1ME1 LINE L1 -852 5363 4455 465 206 9 0 chr13 34033476 34033583 -85711315 + L1ME2 LINE L1 5881 5988 -176 24 32 0 0 chr13 34033638 34033669 -85711229 + AT_rich Low_complexity Low_complexity 1 31 0 778 277 59 22 chr13 34033793 34034299 -85710599 - L1ME1 LINE L1 -2566 3649 3125 925 239 43 0 chr13 34034304 34034513 -85710385 + MER58A DNA MER1_type 6 223 -1 474 229 75 43 chr13 34034515 34034703 -85710195 - L1ME1 LINE L1 -3084 3131 2938 * 2668 223 52 12 chr13 34034674 34035670 -85709228 - L1MD2 LINE L1 -440 5988 4956 711 328 67 49 chr13 34035672 34036345 -85708553 - L1ME1 LINE L1 -5711 685 1 854 318 34 25 chr13 34036372 34036898 -85708000 - L1MD2 LINE L1 -1831 4298 3768 337 290 12 12 chr13 34036954 34037199 -85707699 - L1MD2 LINE L1 -2585 3544 3258 246 39 0 59 chr13 34037218 34037269 -85707629 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 590 212 106 23 chr13 34037387 34037519 -85707379 - MER5A DNA MER1_type 0 189 47 1503 244 60 71 chr13 34037519 34038040 -85706858 - MLT2B1 LTR ERVL 0 520 6 289 196 0 0 chr13 34038045 34038096 -85706802 - MER5A DNA MER1_type -138 51 1 644 279 55 54 chr13 34038299 34039028 -85705870 - L1MD2 LINE L1 -4573 1737 971 2178 124 3 0 chr13 34039098 34039404 -85705494 + AluSg SINE Alu 1 307 -3 272 221 23 23 chr13 34039991 34040077 -85704821 - L1MD2 LINE L1 -5943 176 91 1514 264 70 68 chr13 34040319 34040881 -85704017 - L1MEc LINE L1 -3823 3118 2558 1999 131 3 13 chr13 34040881 34041187 -85703711 + AluSx SINE Alu 1 303 -9 1514 264 70 68 chr13 34041187 34041770 -85703128 - L1MEc LINE L1 -4383 2558 2010 1733 244 81 51 chr13 34041770 34042376 -85702522 - MLT1E2 LTR MaLR 0 626 3 1514 264 70 68 chr13 34042376 34042629 -85702269 - L1MEc LINE L1 -4931 2010 1759 1693 251 114 9 chr13 34042645 34043301 -85701597 - L1MEc LINE L1 -4887 1536 812 1173 296 57 35 chr13 34043407 34043972 -85700926 - L1MEc LINE L1 -5824 599 23 23 33 0 0 chr13 34044015 34044045 -85700853 + AT_rich Low_complexity Low_complexity 1 30 0 692 283 105 70 chr13 34044102 34044485 -85700413 - LTR16A LTR ERVL -54 396 1 22 0 0 0 chr13 34044485 34044507 -85700391 + AT_rich Low_complexity Low_complexity 1 22 0 608 256 0 0 chr13 34044814 34044931 -85699967 - FAM SINE Alu -65 120 4 21 36 0 0 chr13 34045310 34045338 -85699560 + AT_rich Low_complexity Low_complexity 1 28 0 1735 140 23 29 chr13 34046415 34046722 -85698176 - L1PB4 LINE L1 0 6156 5852 1825 163 0 23 chr13 34047059 34047366 -85697532 - AluJo SINE Alu -12 300 1 21 0 0 0 chr13 34047545 34047566 -85697332 + AT_rich Low_complexity Low_complexity 1 21 0 752 167 70 54 chr13 34048821 34049007 -85695891 + MER5A DNA MER1_type 1 189 0 695 250 156 0 chr13 34049638 34049830 -85695068 - MIR SINE MIR -10 252 31 24 96 0 0 chr13 34050437 34050510 -85694388 + AT_rich Low_complexity Low_complexity 1 73 0 599 271 97 14 chr13 34051459 34051666 -85693232 + MIR SINE MIR 15 238 -24 760 317 38 92 chr13 34051684 34052183 -85692715 - L2 LINE L2 -22 3291 2820 234 225 72 65 chr13 34052481 34052619 -85692279 - L2 LINE L2 -80 3233 3095 2129 76 0 34 chr13 34054443 34054792 -85690106 - AluY SINE Alu 0 339 1 23 0 0 0 chr13 34054907 34054930 -85689968 + AT_rich Low_complexity Low_complexity 1 23 0 1360 169 28 0 chr13 34055050 34055298 -85689600 + AluJo SINE Alu 39 293 -19 22 35 0 0 chr13 34056820 34056849 -85688049 + AT_rich Low_complexity Low_complexity 1 29 0 27 92 0 0 chr13 34057039 34057115 -85687783 + AT_rich Low_complexity Low_complexity 1 76 0 820 323 104 9 chr13 34057574 34058036 -85686862 + L1MC4 LINE L1 6493 6998 -1044 252 39 192 58 chr13 34058046 34058098 -85686800 - MADE1 DNA Mariner 0 80 22 791 266 116 55 chr13 34058232 34058812 -85686086 + L1MC5 LINE L1 6903 7517 -444 319 256 58 58 chr13 34058908 34059029 -85685869 + L1ME3 LINE L1 5961 6081 -81 24 32 0 0 chr13 34059072 34059103 -85685795 + AT_rich Low_complexity Low_complexity 1 31 0 244 143 41 0 chr13 34059142 34059191 -85685707 + L1M4 LINE L1 4490 4540 -1606 40 37 0 0 chr13 34059217 34059271 -85685627 + AT_rich Low_complexity Low_complexity 1 54 0 320 284 136 52 chr13 34059333 34059643 -85685255 + L1M4 LINE L1 4728 5063 -1083 2980 240 65 47 chr13 34060102 34062371 -85682527 + L1MB2 LINE L1 801 3160 -3222 3382 191 49 9 chr13 34062438 34063254 -85681644 - L1 LINE L1 -1161 5701 4853 * 11500 131 137 2 chr13 34063243 34065424 -85679474 - L1PBa LINE L1 -3791 3071 598 259 354 48 20 chr13 34065910 34066057 -85678841 + L2 LINE L2 3118 3268 -4 24 0 0 0 chr13 34066595 34066619 -85678279 + AT_rich Low_complexity Low_complexity 1 24 0 981 252 67 0 chr13 34066681 34066963 -85677935 - MER46C DNA MER2_type -33 305 5 311 121 17 0 chr13 34067084 34067142 -85677756 + (CA)n Simple_repeat Simple_repeat 2 60 0 896 177 24 0 chr13 34067154 34067318 -85677580 + MER58B DNA MER1_type 173 340 -1 26 88 0 0 chr13 34067516 34067584 -85677314 + AT_rich Low_complexity Low_complexity 1 68 0 746 188 7 0 chr13 34068250 34068388 -85676510 + AluJo SINE Alu 1 139 -173 272 246 0 0 chr13 34068388 34068445 -85676453 + AluJ/monomer SINE Alu 241 297 -3 2203 187 52 2 chr13 34068649 34069093 -85675805 - L1PBa LINE L1 -6395 468 3 1052 255 42 7 chr13 34069106 34069652 -85675246 + L1MB2 LINE L1 3431 4139 -2243 2353 197 31 69 chr13 34069689 34069877 -85675021 + L1MB2 LINE L1 4879 5072 -1337 240 86 0 0 chr13 34069877 34069912 -85674986 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2353 197 31 69 chr13 34069912 34070153 -85674745 + L1MB2 LINE L1 5072 5320 -1089 2170 121 3 0 chr13 34070153 34070458 -85674440 + AluSp SINE Alu 1 306 -7 2353 197 31 69 chr13 34070458 34070768 -85674130 + L1MB2 LINE L1 5320 5587 -822 3477 159 45 13 chr13 34070815 34071511 -85673387 + L1MB2 LINE L1 5683 6400 -7 612 295 74 32 chr13 34071517 34072098 -85672800 + L1ME LINE L1 5191 5797 -365 2125 146 24 11 chr13 34073337 34073707 -85671191 - THE1C LTR MaLR 0 375 1 840 169 38 19 chr13 34074485 34074645 -85670253 + Tigger1 DNA MER2_type 1 163 -2255 * 1128 176 23 9 chr13 34074624 34074840 -85670058 + Tigger1 DNA MER2_type 2200 2418 0 826 226 98 0 chr13 34074886 34075090 -85669808 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr13 34075541 34075562 -85669336 + AT_rich Low_complexity Low_complexity 1 21 0 1688 164 26 22 chr13 34075596 34075907 -85668991 - AluJo SINE Alu 0 312 1 35 0 0 0 chr13 34076174 34076209 -85668689 + AT_rich Low_complexity Low_complexity 1 35 0 4102 218 70 104 chr13 34076560 34078376 -85666522 - MER52A LTR ERV1 0 1755 1 21 36 0 0 chr13 34078647 34078675 -85666223 + AT_rich Low_complexity Low_complexity 1 28 0 27 96 0 0 chr13 34079275 34079358 -85665540 + AT_rich Low_complexity Low_complexity 1 83 0 340 294 122 46 chr13 34079397 34079456 -85665442 - MER58C DNA MER1_type -2206 214 161 2113 106 10 0 chr13 34079456 34079749 -85665149 - AluSg SINE Alu -14 296 1 340 294 122 46 chr13 34079749 34079886 -85665012 - MER58C DNA MER1_type -2259 161 3 1692 172 114 12 chr13 34080033 34080365 -85664533 + MER47A DNA MER2_type 1 366 0 29 60 0 0 chr13 34080916 34080966 -85663932 + AT_rich Low_complexity Low_complexity 1 50 0 1382 310 62 51 chr13 34081666 34082515 -85662383 + L1MEc LINE L1 107 974 -5422 1958 134 7 0 chr13 34082515 34082799 -85662099 + AluSx SINE Alu 1 286 -26 1382 310 62 51 chr13 34082799 34083103 -85661795 + L1MEc LINE L1 974 1273 -5123 1930 237 47 48 chr13 34083238 34084061 -85660837 + L1MD2 LINE L1 5262 6115 -51 1958 241 44 2 chr13 34084067 34084593 -85660305 + L1MB3 LINE L1 4437 4984 -1162 * 11586 201 60 8 chr13 34084573 34088008 -85656890 + L1MA8 LINE L1 2493 6125 -166 2232 140 42 28 chr13 34088008 34088436 -85656462 - Tigger2a DNA MER2_type 0 434 1 11586 201 60 8 chr13 34088436 34088597 -85656301 + L1MA8 LINE L1 6125 6276 -15 4340 189 32 19 chr13 34088625 34089743 -85655155 + L1MB3 LINE L1 5052 6179 -4 958 248 23 8 chr13 34090053 34090311 -85654587 + L1MEc LINE L1 1535 1796 -4600 372 219 0 0 chr13 34090326 34090399 -85654499 - Tigger5 DNA MER2_type 0 2323 2251 360 265 164 27 chr13 34090446 34090665 -85654233 + L1M4 LINE L1 3899 4147 -1999 13473 149 15 23 chr13 34091573 34093937 -85650961 + L1P2 LINE L1 12 2357 -3789 22244 75 7 4 chr13 34094053 34097252 -85647646 + L1P2 LINE L1 2301 5506 -648 1145 46 0 20 chr13 34097252 34097398 -85647500 + L1PA6 LINE L1 6006 6153 -1 2297 100 3 0 chr13 34098722 34099031 -85645867 + AluSp SINE Alu 1 310 -3 2019 128 3 3 chr13 34099187 34099476 -85645422 + AluSq SINE Alu 1 289 -24 325 141 28 0 chr13 34099476 34099547 -85645351 + (TA)n Simple_repeat Simple_repeat 1 73 0 1122 259 47 7 chr13 34100147 34100448 -85644450 - MER58B DNA MER1_type 0 341 29 407 253 84 42 chr13 34100453 34100619 -85644279 - MER112 DNA MER1_type -9 251 79 337 318 32 16 chr13 34100671 34100797 -85644101 - MIR SINE MIR -63 145 18 23 33 0 0 chr13 34101384 34101414 -85643484 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr13 34101739 34101771 -85643127 + AT_rich Low_complexity Low_complexity 1 32 0 188 268 21 113 chr13 34103403 34103500 -85641398 + L2 LINE L2 3222 3309 -4 309 51 0 0 chr13 34104028 34104067 -85640831 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 397 321 71 9 chr13 34105003 34105191 -85639707 + MIR SINE MIR 9 205 -57 21 0 0 0 chr13 34105961 34105982 -85638916 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 34106614 34106638 -85638260 + AT_rich Low_complexity Low_complexity 1 24 0 408 264 35 76 chr13 34106880 34107024 -85637874 + MIR SINE MIR 125 262 0 31 0 0 0 chr13 34107131 34107162 -85637736 + AT_rich Low_complexity Low_complexity 1 31 0 411 20 0 0 chr13 34107414 34107463 -85637435 + L1P LINE L1 4009 4057 -2089 28 0 0 0 chr13 34107554 34107582 -85637316 + AT_rich Low_complexity Low_complexity 1 28 0 35 71 0 0 chr13 34107980 34108050 -85636848 + AT_rich Low_complexity Low_complexity 1 70 0 787 87 4 8 chr13 34112219 34112345 -85632553 + MER30B DNA MER1_type 6 110 -80 227 158 66 0 chr13 34112360 34112436 -85632462 + (TA)n Simple_repeat Simple_repeat 1 81 0 2116 94 31 0 chr13 34113377 34113665 -85631233 + AluSg SINE Alu 8 304 -6 796 221 39 63 chr13 34114196 34114450 -85630448 - L1MD2 LINE L1 -24 6335 6088 594 153 9 0 chr13 34115085 34115196 -85629702 - L1MB4 LINE L1 -1 6179 6068 1173 162 14 19 chr13 34115196 34115412 -85629486 - Tigger2 DNA MER2_type -15 2703 2489 339 25 0 0 chr13 34115432 34115472 -85629426 + (TG)n Simple_repeat Simple_repeat 2 41 0 228 67 0 0 chr13 34115471 34115501 -85629397 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 1234 102 0 0 chr13 34117419 34117586 -85627312 + AluSg/x SINE Alu 129 295 -15 5789 56 6 0 chr13 34118419 34119151 -85625747 - L1PA8 LINE L1 0 6172 5437 321 68 0 0 chr13 34121579 34121623 -85623275 + (TG)n Simple_repeat Simple_repeat 1 44 0 1064 130 7 0 chr13 34121623 34121777 -85623121 - AluSg/x SINE Alu -33 277 123 27 29 0 0 chr13 34121988 34122022 -85622876 + AT_rich Low_complexity Low_complexity 1 34 0 316 279 130 57 chr13 34122097 34122534 -85622364 - HAL1 LINE L1 -120 2387 1919 817 313 66 18 chr13 34122705 34123040 -85621858 + MLT1I LTR MaLR 59 409 0 430 216 103 0 chr13 34123044 34123160 -85621738 - HAL1 LINE L1 -784 1723 1596 691 229 146 55 chr13 34123352 34123736 -85621162 - HAL1 LINE L1 -973 1534 1116 1242 163 0 0 chr13 34125686 34125952 -85618946 + (TA)n Simple_repeat Simple_repeat 1 266 0 28 48 0 0 chr13 34127314 34127356 -85617542 + AT_rich Low_complexity Low_complexity 1 42 0 33 0 0 0 chr13 34128561 34128594 -85616304 + AT_rich Low_complexity Low_complexity 1 33 0 2136 113 0 20 chr13 34128819 34129119 -85615779 + AluSq SINE Alu 1 294 -19 243 420 0 10 chr13 34129290 34129390 -85615508 - L2 LINE L2 -11 3261 3163 711 320 86 31 chr13 34129817 34130326 -85614572 - L2 LINE L2 -626 2688 2152 546 331 107 32 chr13 34130327 34130674 -85614224 + L2 LINE L2 2929 3301 -12 181 184 26 0 chr13 34130787 34130825 -85614073 - L2 LINE L2 -1385 1929 1891 201 340 0 0 chr13 34130875 34130928 -85613970 - L2 LINE L2 -86 3186 3134 228 352 207 26 chr13 34131032 34131574 -85613324 - L2 LINE L2 -1442 1872 1233 284 308 33 0 chr13 34131857 34131948 -85612950 + MIR SINE MIR 48 141 -121 31223 108 10 59 chr13 34133359 34139815 -85605083 - L1PA7 LINE L1 -4 6150 19 1938 154 0 0 chr13 34140103 34140396 -85604502 - AluJb SINE Alu -19 293 1 4579 20 2 2 chr13 34140430 34140987 -85603911 + L1PA3 LINE L1 5612 6155 0 609 110 50 0 chr13 34142560 34142660 -85602238 - L1MA3 LINE L1 0 6305 6201 847 246 40 11 chr13 34142673 34142950 -85601948 + L1ME1 LINE L1 3558 3842 -2304 3672 241 45 19 chr13 34142958 34143992 -85600906 - L1PA16 LINE L1 -1052 5094 4034 5719 138 23 1 chr13 34143995 34145029 -85599869 + L1PA16 LINE L1 5102 6157 -9 2075 227 125 47 chr13 34145051 34145621 -85599277 + L1ME1 LINE L1 3847 4516 -1630 1730 120 36 0 chr13 34145621 34145896 -85599002 + L1MA2 LINE L1 6018 6302 -2 2075 227 125 47 chr13 34145896 34146234 -85598664 + L1ME1 LINE L1 4516 4826 -1320 3347 218 61 8 chr13 34146235 34147074 -85597824 + L1ME1 LINE L1 5280 6162 -4 187 261 0 0 chr13 34147232 34147278 -85597620 + L2 LINE L2 3227 3272 0 396 226 30 131 chr13 34147376 34147575 -85597323 + MIR SINE MIR 84 262 0 199 411 82 0 chr13 34148596 34148742 -85596156 - MIR3 SINE MIR -28 180 23 206 341 178 19 chr13 34149556 34149764 -85595134 - L2 LINE L2 -340 2974 2734 182 360 67 47 chr13 34149917 34150067 -85594831 - L2 LINE L2 -660 2654 2502 6647 138 13 13 chr13 34150647 34151522 -85593376 - L1MA2 LINE L1 0 6304 5431 1948 150 0 0 chr13 34151522 34151816 -85593082 - AluSx SINE Alu -18 294 1 6647 138 13 13 chr13 34151816 34152810 -85592088 - L1MA2 LINE L1 -873 5431 4433 497 230 30 0 chr13 34152812 34152912 -85591986 + Tigger5 DNA MER2_type 2221 2323 0 2315 243 43 0 chr13 34152978 34153508 -85591390 + L1MB7 LINE L1 495 1047 -5495 306 200 88 72 chr13 34153510 34153635 -85591263 + L1MB7 LINE L1 1075 1201 -5341 3554 160 20 8 chr13 34153643 34154280 -85590618 + L1PA15 LINE L1 5517 6161 -4 6132 238 51 40 chr13 34154294 34156677 -85588221 + L1MB7 LINE L1 2506 4909 -1735 3573 193 43 23 chr13 34156673 34156777 -85588121 + L1MB3 LINE L1 5366 5466 -717 * 2575 128 26 14 chr13 34156777 34157200 -85587698 - MSTA LTR MaLR 0 428 1 3573 193 43 23 chr13 34157200 34157893 -85587005 + L1MB3 LINE L1 5466 6179 -4 4105 205 46 25 chr13 34157906 34159640 -85585258 + L1MB7 LINE L1 4914 6682 0 737 316 63 16 chr13 34160168 34160722 -85584176 + L1M4 LINE L1 2131 2710 -3436 3765 116 9 8 chr13 34160745 34161273 -85583625 + MER1A DNA MER1_type 1 529 0 21 0 0 0 chr13 34161374 34161395 -85583503 + AT_rich Low_complexity Low_complexity 1 21 0 925 284 61 56 chr13 34161434 34162546 -85582352 + L1M4 LINE L1 2909 4026 -2120 183 42 0 0 chr13 34162666 34162690 -85582208 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr13 34164335 34164364 -85580534 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr13 34164774 34164801 -85580097 + AT_rich Low_complexity Low_complexity 1 27 0 276 130 0 0 chr13 34164914 34164960 -85579938 + (TCC)n Simple_repeat Simple_repeat 1 46 0 999 251 107 31 chr13 34164977 34165436 -85579462 - MLT1G1 LTR MaLR -45 504 1 24 32 0 0 chr13 34165578 34165609 -85579289 + AT_rich Low_complexity Low_complexity 1 31 0 237 254 18 0 chr13 34165806 34165861 -85579037 - L3b LINE CR1 -1 1582 1527 345 152 30 0 chr13 34165869 34165935 -85578963 - MER53 DNA DNA -101 88 21 22 0 0 0 chr13 34165953 34165975 -85578923 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr13 34166219 34166246 -85578652 + AT_rich Low_complexity Low_complexity 1 27 0 558 214 23 54 chr13 34167554 34167786 -85577112 - MER106B DNA MER1_type 0 1059 11 25 83 0 0 chr13 34167841 34167901 -85576997 + AT_rich Low_complexity Low_complexity 1 60 0 405 0 0 0 chr13 34167981 34168026 -85576872 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 95 0 0 chr13 34168623 34168686 -85576212 + AT_rich Low_complexity Low_complexity 1 63 0 194 224 35 17 chr13 34168835 34168893 -85576005 - MIR3 SINE MIR -30 178 120 28 0 0 0 chr13 34169669 34169697 -85575201 + AT_rich Low_complexity Low_complexity 1 28 0 213 39 0 0 chr13 34170163 34170189 -85574709 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2194 100 3 0 chr13 34170408 34170697 -85574201 + AluSx SINE Alu 3 292 -20 485 258 47 53 chr13 34170884 34171074 -85573824 - MIR SINE MIR -8 254 66 2117 161 45 8 chr13 34171075 34171454 -85573444 - MLT2C1 LTR ERVL 0 397 5 1824 237 35 89 chr13 34171968 34172619 -85572279 + L2 LINE L2 2131 2746 -568 948 210 36 0 chr13 34172622 34172817 -85572081 - MER3 DNA MER1_type 0 209 8 869 302 120 38 chr13 34172822 34173349 -85571549 + L2 LINE L2 2742 3313 0 26 30 0 0 chr13 34173428 34173461 -85571437 + AT_rich Low_complexity Low_complexity 1 33 0 691 248 250 36 chr13 34173956 34174368 -85570530 + L2 LINE L2 2814 3313 0 193 267 67 0 chr13 34174474 34174519 -85570379 + MIR SINE MIR 64 111 -151 2997 84 23 0 chr13 34174554 34174983 -85569915 - L1PA13 LINE L1 -1 6162 5724 235 326 31 31 chr13 34174992 34175121 -85569777 + MIR SINE MIR 102 230 -32 1143 101 0 19 chr13 34175277 34175435 -85569463 - AluSg/x SINE Alu -18 294 140 1190 109 0 0 chr13 34175536 34175692 -85569206 + AluSg/x SINE Alu 136 291 -19 673 300 40 9 chr13 34175926 34176149 -85568749 - L2 LINE L2 -413 2901 2672 366 23 0 0 chr13 34176781 34176824 -85568074 + (TG)n Simple_repeat Simple_repeat 1 43 0 427 311 48 24 chr13 34176944 34177111 -85567787 - MIR SINE MIR -70 192 22 1561 257 96 51 chr13 34177257 34178347 -85566551 + L1ME1 LINE L1 795 1929 -4477 1171 235 59 47 chr13 34178369 34178828 -85566070 + L1ME1 LINE L1 5116 5629 -853 690 263 21 16 chr13 34178820 34179010 -85565888 + L1ME1 LINE L1 6218 6408 -18 * 189 147 0 0 chr13 34179293 34179327 -85565571 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 21 0 0 0 chr13 34179412 34179433 -85565465 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 34179794 34179817 -85565081 + AT_rich Low_complexity Low_complexity 1 23 0 189 364 129 0 chr13 34180893 34181033 -85563865 - L2 LINE L2 -880 2434 2277 259 348 205 28 chr13 34181272 34181804 -85563094 - L2 LINE L2 -2158 1156 531 23 0 0 0 chr13 34183574 34183597 -85561301 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr13 34185517 34185554 -85559344 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr13 34185789 34185841 -85559057 + AT_rich Low_complexity Low_complexity 1 52 0 3840 198 88 10 chr13 34185975 34186886 -85558012 - L1 LINE L1 -1088 5760 4779 * 16285 186 22 10 chr13 34186881 34190295 -85554603 - L1 LINE L1 -3390 3458 5 1599 129 3 77 chr13 34190298 34190387 -85554511 - Tigger2a DNA MER2_type -2420 288 194 1923 141 3 0 chr13 34190387 34190697 -85554201 + AluJb SINE Alu 1 311 0 1599 129 3 77 chr13 34190697 34190916 -85553982 - Tigger2a DNA MER2_type -2514 194 2 * 2452 180 71 16 chr13 34190916 34191527 -85553371 - Tigger1 DNA MER2_type -1435 983 5 23 0 0 0 chr13 34192024 34192047 -85552851 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr13 34192998 34193023 -85551875 + AT_rich Low_complexity Low_complexity 1 25 0 1288 264 141 16 chr13 34195616 34196388 -85548510 - L1ME3 LINE L1 -3 6228 5351 236 235 94 0 chr13 34199031 34199116 -85545782 - L1ME3 LINE L1 -866 5349 5257 2095 274 87 46 chr13 34199128 34199768 -85545130 - L1ME3 LINE L1 -1002 5213 4601 2054 113 0 10 chr13 34199768 34200080 -85544818 + AluSx SINE Alu 1 309 0 2095 274 87 46 chr13 34200080 34200656 -85544242 - L1ME3 LINE L1 -1614 4601 3945 2233 105 0 0 chr13 34204127 34204431 -85540467 - AluSx SINE Alu -8 304 1 24 0 0 0 chr13 34204988 34205012 -85539886 + AT_rich Low_complexity Low_complexity 1 24 0 1581 187 6 16 chr13 34205023 34205338 -85539560 + AluJo SINE Alu 1 312 0 33 43 0 0 chr13 34205670 34205717 -85539181 + AT_rich Low_complexity Low_complexity 1 47 0 306 0 0 0 chr13 34209576 34209610 -85535288 + (TG)n Simple_repeat Simple_repeat 2 35 0 2064 150 0 0 chr13 34210600 34210907 -85533991 + AluSx SINE Alu 3 309 -3 23 0 0 0 chr13 34211749 34211772 -85533126 + AT_rich Low_complexity Low_complexity 1 23 0 719 287 0 0 chr13 34212105 34212293 -85532605 + MER46C DNA MER2_type 137 324 -14 2868 258 41 39 chr13 34214352 34214794 -85530104 - L1ME3 LINE L1 -2995 3220 2780 2388 119 94 8 chr13 34214794 34215188 -85529710 + MSTA LTR MaLR 1 428 0 2868 258 41 39 chr13 34215188 34215674 -85529224 - L1ME3 LINE L1 -3435 2780 2328 648 218 0 0 chr13 34215674 34215798 -85529100 - FLAM_A SINE Alu -8 125 2 2868 258 41 39 chr13 34215798 34216170 -85528728 - L1ME3 LINE L1 -3887 2328 1958 405 309 72 21 chr13 34216187 34216423 -85528475 - L1ME3 LINE L1 -5820 385 138 1077 323 122 13 chr13 34216497 34217216 -85527682 + L2 LINE L2 2501 3309 -4 10531 111 82 5 chr13 34217217 34218869 -85526029 - Tigger1 DNA MER2_type 0 2418 640 1752 138 82 31 chr13 34218869 34219224 -85525674 - THE1C LTR MaLR 0 375 3 3604 148 19 0 chr13 34219226 34219808 -85525090 - Tigger1 DNA MER2_type -1771 647 55 189 0 0 0 chr13 34219808 34219829 -85525069 + (A)n Simple_repeat Simple_repeat 1 21 0 272 286 170 14 chr13 34219874 34220021 -85524877 + MIR SINE MIR 63 232 -30 185 307 78 48 chr13 34220640 34220806 -85524092 + L2 LINE L2 3122 3292 -21 187 343 27 14 chr13 34220813 34220886 -85524012 - L2 LINE L2 -38 3234 3161 259 167 61 45 chr13 34221041 34221107 -85523791 + MER103 DNA DNA 8 74 -92 27 0 0 0 chr13 34221743 34221770 -85523128 + AT_rich Low_complexity Low_complexity 1 27 0 44 35 0 0 chr13 34222773 34222831 -85522067 + AT_rich Low_complexity Low_complexity 1 58 0 217 336 41 33 chr13 34222865 34222987 -85521911 - L2 LINE L2 -12 3301 3179 7582 21 6 2 chr13 34223042 34224369 -85520529 + L1PA3 LINE L1 4823 6152 -3 230 202 0 0 chr13 34224910 34224956 -85519942 - MIR SINE MIR -118 90 45 204 40 0 0 chr13 34224971 34224996 -85519902 + (CTG)n Simple_repeat Simple_repeat 2 26 0 330 297 135 0 chr13 34224998 34225109 -85519789 - MIR SINE MIR -25 237 112 23 33 0 0 chr13 34225357 34225387 -85519511 + AT_rich Low_complexity Low_complexity 1 30 0 2200 70 10 3 chr13 34225919 34226221 -85518677 - L1PB1 LINE L1 -4 6147 5844 2121 115 0 28 chr13 34226549 34226870 -85518028 - AluSx SINE Alu 0 312 1 5936 92 24 3 chr13 34227292 34229110 -85515788 + L1PA13 LINE L1 4317 6160 -3 7330 128 39 40 chr13 34230130 34231065 -85513833 - HSMAR2 DNA Mariner -1 1301 367 1655 170 3 48 chr13 34231065 34231248 -85513650 - AluJb SINE Alu -15 297 132 212 0 36 0 chr13 34231248 34231276 -85513622 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1655 170 3 48 chr13 34231276 34231403 -85513495 - AluJb SINE Alu -180 132 1 7330 128 39 40 chr13 34231403 34231762 -85513136 - HSMAR2 DNA Mariner -935 367 9 255 298 41 41 chr13 34232119 34232240 -85512658 + L2 LINE L2 3151 3271 -1 864 241 46 30 chr13 34232391 34232641 -85512257 + MIR SINE MIR 1 254 -8 538 312 38 0 chr13 34232668 34232825 -85512073 - MLT1I LTR MaLR -206 203 41 16580 51 5 6 chr13 34233839 34237907 -85506991 - L1PA5 LINE L1 -3 6151 2127 308 269 10 67 chr13 34238086 34238190 -85506708 + L2 LINE L2 3169 3266 -6 1865 182 14 20 chr13 34238426 34238460 -85506438 - MLT1A1 LTR MaLR 0 365 332 1760 110 116 12 chr13 34238460 34238787 -85506111 - MER46B DNA MER2_type 0 236 1 1865 182 14 20 chr13 34238787 34239104 -85505794 - MLT1A1 LTR MaLR -33 332 16 1811 247 45 15 chr13 34239515 34240859 -85504039 - L1MDa LINE L1 -1780 4760 3273 * 3488 204 68 4 chr13 34240855 34241730 -85503168 - L1MDa LINE L1 -909 1992 1573 44097 37 3 0 chr13 34241756 34247888 -85497010 - L1PA4 LINE L1 -3 6152 1 5112 217 122 11 chr13 34247892 34249223 -85495675 - L1MDa LINE L1 -4984 1556 116 1225 95 0 6 chr13 34249236 34249405 -85495493 - L1PB1 LINE L1 -6 6145 5978 306 0 0 0 chr13 34249406 34249440 -85495458 + (TG)n Simple_repeat Simple_repeat 2 35 0 3377 145 25 8 chr13 34249443 34250189 -85494709 - L1PB1 LINE L1 -371 5780 5017 385 200 24 12 chr13 34250188 34250273 -85494625 - L1MDa LINE L1 -6412 128 43 * 284 358 83 0 chr13 34250734 34250843 -85494055 - L2 LINE L2 -1 3271 3154 204 40 0 0 chr13 34251698 34251723 -85493175 + (TA)n Simple_repeat Simple_repeat 1 25 0 219 210 25 12 chr13 34252419 34252500 -85492398 + (TA)n Simple_repeat Simple_repeat 2 83 0 22 35 0 0 chr13 34252964 34252993 -85491905 + AT_rich Low_complexity Low_complexity 1 29 0 695 277 104 34 chr13 34254528 34254616 -85490282 + L1MC4 LINE L1 7565 7645 -397 233 0 62 0 chr13 34254616 34254648 -85490250 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1969 79 68 8 chr13 34254650 34254915 -85489983 - AluSq SINE Alu -32 281 1 695 277 104 34 chr13 34254915 34255263 -85489635 + L1MC4 LINE L1 7645 8035 -7 400 302 0 28 chr13 34255407 34255573 -85489325 + L1ME LINE L1 5513 5662 -459 2493 50 7 0 chr13 34256031 34256330 -85488568 + AluY SINE Alu 1 301 -10 236 330 78 0 chr13 34258579 34258694 -85486204 - L2 LINE L2 -1 3271 3148 555 166 12 117 chr13 34258701 34258864 -85486034 + MER20 DNA MER1_type 73 218 -1 183 360 99 41 chr13 34258864 34259106 -85485792 - L2 LINE L2 -116 3156 2901 1018 48 0 0 chr13 34259217 34259343 -85485555 + L1PA5 LINE L1 6026 6151 -3 21 0 0 0 chr13 34259449 34259470 -85485428 + AT_rich Low_complexity Low_complexity 1 21 0 2336 99 0 0 chr13 34259479 34259782 -85485116 - AluSq SINE Alu -10 303 1 218 269 0 0 chr13 34261619 34261671 -85483227 + CT-rich Low_complexity Low_complexity 1 52 0 192 189 0 0 chr13 34264572 34264609 -85480289 - L2 LINE L2 -94 3219 3183 232 308 68 55 chr13 34264932 34265078 -85479820 - MIR SINE MIR -5 257 110 188 257 129 29 chr13 34265141 34265211 -85479687 - MIR3 SINE MIR -43 165 89 437 62 15 0 chr13 34265374 34265439 -85479459 + (TA)n Simple_repeat Simple_repeat 2 67 0 5643 22 0 0 chr13 34265439 34266088 -85478810 - L1PA5 LINE L1 -20 6134 5486 215 177 16 0 chr13 34266380 34266442 -85478456 + (TA)n Simple_repeat Simple_repeat 1 63 0 360 294 65 74 chr13 34268130 34268361 -85476537 - L2 LINE L2 0 3272 3044 313 328 140 67 chr13 34268532 34268979 -85475919 - L2 LINE L2 -218 3054 2568 1720 167 3 42 chr13 34269795 34270106 -85474792 + AluJb SINE Alu 1 299 -13 2226 84 3 0 chr13 34270716 34271024 -85473874 - AluY SINE Alu -2 309 1 201 296 80 40 chr13 34271374 34271499 -85473399 + MIR SINE MIR 19 148 -114 21 0 0 0 chr13 34271839 34271860 -85473038 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr13 34273434 34273463 -85471435 + AT_rich Low_complexity Low_complexity 1 29 0 2360 91 0 0 chr13 34274181 34274490 -85470408 + AluY SINE Alu 1 309 -2 202 188 0 0 chr13 34275000 34275032 -85469866 + polypurine Low_complexity Low_complexity 2 33 0 474 264 31 0 chr13 34275296 34275425 -85469473 - MIR SINE MIR -44 218 86 216 86 0 0 chr13 34276587 34276622 -85468276 + (TA)n Simple_repeat Simple_repeat 2 36 0 3196 186 41 26 chr13 34276864 34277215 -85467683 - L1MB7 LINE L1 -10 6174 5830 2172 95 3 0 chr13 34277215 34277509 -85467389 - AluY SINE Alu -16 295 1 3196 186 41 26 chr13 34277509 34277861 -85467037 - L1MB7 LINE L1 -354 5830 5460 189 0 0 0 chr13 34278620 34278641 -85466257 + (CA)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr13 34280318 34280340 -85464558 + AT_rich Low_complexity Low_complexity 1 22 0 2670 119 27 19 chr13 34280369 34280780 -85464118 - MSTC LTR MaLR 0 428 15 215 305 222 39 chr13 34282140 34282785 -85462113 - L2 LINE L2 -509 2805 2043 1726 153 20 10 chr13 34282943 34283244 -85461654 + AluJb SINE Alu 1 304 -8 584 268 112 6 chr13 34284185 34284364 -85460534 + MIR SINE MIR 29 226 -36 196 290 58 29 chr13 34284400 34284469 -85460429 + L2 LINE L2 3180 3250 -63 22 0 0 0 chr13 34284697 34284719 -85460179 + AT_rich Low_complexity Low_complexity 1 22 0 292 314 123 83 chr13 34284860 34285064 -85459834 - L2 LINE L2 -4 3268 3057 1495 183 0 4 chr13 34286114 34286371 -85458527 - AluJo SINE Alu -56 256 1 2150 96 3 3 chr13 34286794 34287086 -85457812 + AluSg SINE Alu 1 292 -18 2609 211 39 10 chr13 34287756 34288353 -85456545 + MER90 LTR ERV1 1 614 0 2168 127 0 3 chr13 34288419 34288726 -85456172 + AluSx SINE Alu 1 306 -6 23 68 0 0 chr13 34288831 34288875 -85456023 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr13 34293248 34293276 -85451622 + AT_rich Low_complexity Low_complexity 1 28 0 531 0 0 0 chr13 34295900 34295959 -85448939 + (CTG)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr13 34299727 34299748 -85445150 + AT_rich Low_complexity Low_complexity 1 21 0 446 242 13 59 chr13 34302341 34302494 -85442404 - L1ME1 LINE L1 -7 6159 6014 369 0 0 0 chr13 34303838 34303879 -85441019 + (TG)n Simple_repeat Simple_repeat 2 42 0 396 179 232 9 chr13 34306102 34306214 -85438684 - MIR SINE MIR -66 196 60 21 0 0 0 chr13 34306395 34306416 -85438482 + AT_rich Low_complexity Low_complexity 1 21 0 571 298 144 59 chr13 34307063 34307506 -85437392 - L3 LINE CR1 -14 1563 1083 204 291 114 25 chr13 34308382 34308461 -85436437 - L3 LINE CR1 -473 1104 1019 22 56 0 0 chr13 34308544 34308580 -85436318 + AT_rich Low_complexity Low_complexity 1 36 0 621 296 29 50 chr13 34310293 34310533 -85434365 - MIR SINE MIR -17 245 11 389 255 102 0 chr13 34310537 34310635 -85434263 + MIR SINE MIR 106 213 -49 207 279 59 15 chr13 34310667 34310735 -85434163 - MIR SINE MIR -164 98 28 994 258 151 6 chr13 34310913 34311258 -85433640 + L2 LINE L2 2209 2603 -711 218 302 149 66 chr13 34311313 34311660 -85433238 - L2 LINE L2 -1150 2164 1774 1930 98 39 3 chr13 34311660 34311946 -85432952 + L1PB1 LINE L1 5852 6147 -4 218 302 149 66 chr13 34311946 34312022 -85432876 - L2 LINE L2 -1540 1774 1706 223 392 0 0 chr13 34312629 34312726 -85432172 - L2 LINE L2 -2569 745 649 222 243 14 71 chr13 34313315 34313385 -85431513 + MIR3 SINE MIR 120 185 -23 27 29 0 0 chr13 34313484 34313518 -85431380 + AT_rich Low_complexity Low_complexity 1 34 0 37 90 0 0 chr13 34313548 34313648 -85431250 + AT_rich Low_complexity Low_complexity 1 100 0 223 316 71 10 chr13 34313780 34313878 -85431020 + L3 LINE CR1 69 172 -1405 1398 220 26 87 chr13 34314021 34314038 -85430860 + L1MEc LINE L1 2030 2046 -4169 567 76 13 0 chr13 34314038 34314117 -85430781 + MADE1 DNA Mariner 1 80 0 1398 220 26 87 chr13 34314117 34314339 -85430559 + L1MEc LINE L1 2046 2280 -3935 1647 195 23 3 chr13 34314339 34314641 -85430257 + AluJb SINE Alu 4 311 -1 1398 220 26 87 chr13 34314641 34315073 -85429825 + L1MEc LINE L1 2280 2652 -3563 316 214 0 0 chr13 34315090 34315146 -85429752 - Tigger5 DNA MER2_type 0 2323 2268 440 206 0 0 chr13 34315158 34315231 -85429667 - Tigger5 DNA MER2_type -2250 73 1 969 148 82 0 chr13 34315232 34315428 -85429470 + L1MEc LINE L1 2669 2880 -3335 301 272 82 90 chr13 34315441 34315720 -85429178 + L3 LINE CR1 1111 1387 -190 602 205 0 47 chr13 34315764 34315891 -85429007 - FLAM_A SINE Alu -12 121 1 1653 188 13 3 chr13 34315956 34316264 -85428634 + AluJo SINE Alu 1 311 -1 22 35 0 0 chr13 34317368 34317397 -85427501 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 34318299 34318329 -85426569 + AT_rich Low_complexity Low_complexity 1 30 0 196 256 128 34 chr13 34321580 34321697 -85423201 - L2 LINE L2 -4 3309 3182 392 217 0 12 chr13 34322241 34322324 -85422574 - MER63 DNA MER1_type -295 766 685 538 269 98 51 chr13 34322789 34323419 -85421479 - L1ME4a LINE L1 -2 6119 5455 255 259 37 104 chr13 34323779 34323914 -85420984 - Charlie8 DNA MER1_type -2291 126 1 1459 151 93 18 chr13 34324237 34324515 -85420383 - AluJo SINE Alu -13 299 1 30 0 0 0 chr13 34324640 34324670 -85420228 + AT_rich Low_complexity Low_complexity 1 30 0 1699 169 0 20 chr13 34325661 34325962 -85418936 - AluJo SINE Alu -7 305 11 210 243 135 40 chr13 34326324 34326398 -85418500 - MIR SINE MIR -105 103 23 323 313 99 0 chr13 34326422 34326553 -85418345 - L3 LINE CR1 -1 1576 1433 2222 230 93 47 chr13 34326601 34327344 -85417554 + L2 LINE L2 1801 2577 -737 260 368 152 6 chr13 34327394 34327565 -85417333 - L3 LINE CR1 -498 1079 884 489 313 27 7 chr13 34327642 34327789 -85417109 - MIR SINE MIR -90 172 23 513 328 99 51 chr13 34327877 34328476 -85416422 - L2 LINE L2 -453 2861 2187 3477 167 11 54 chr13 34328489 34329196 -85415702 + MER54B LTR ERVL 1 677 -116 369 297 95 39 chr13 34329264 34329496 -85415402 - L2 LINE L2 -1212 2102 1858 204 290 108 0 chr13 34329519 34329612 -85415286 - L3 LINE CR1 -731 846 744 243 206 59 15 chr13 34330224 34330292 -85414606 + GA-rich Low_complexity Low_complexity 3 73 0 405 267 102 75 chr13 34330293 34330480 -85414418 - MIR SINE MIR -13 249 58 21 82 0 0 chr13 34331333 34331382 -85413516 + AT_rich Low_complexity Low_complexity 1 49 0 2105 98 3 50 chr13 34332737 34333055 -85411843 - AluSx SINE Alu -9 303 1 29 47 0 0 chr13 34333193 34333236 -85411662 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr13 34333586 34333617 -85411281 + AT_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr13 34334169 34334218 -85410680 + AT_rich Low_complexity Low_complexity 1 49 0 29 0 0 0 chr13 34335353 34335382 -85409516 + AT_rich Low_complexity Low_complexity 1 29 0 692 283 68 34 chr13 34336359 34336596 -85408302 - MIR SINE MIR -6 256 12 241 213 129 116 chr13 34337341 34337496 -85407402 + L2 LINE L2 3149 3305 -8 203 350 136 10 chr13 34337678 34337781 -85407117 - L2 LINE L2 -18 3254 3139 582 291 32 16 chr13 34337900 34338089 -85406809 - MIR SINE MIR -66 196 5 24 32 0 0 chr13 34339223 34339254 -85405644 + AT_rich Low_complexity Low_complexity 1 31 0 1795 130 57 3 chr13 34339256 34339572 -85405326 - L1MA4 LINE L1 -14 6286 5954 1296 148 84 15 chr13 34339576 34339836 -85405062 - MER1B DNA MER1_type 0 339 1 36 53 0 0 chr13 34340744 34340801 -85404097 + AT_rich Low_complexity Low_complexity 1 57 0 240 158 105 18 chr13 34340977 34341034 -85403864 - MLT1K LTR MaLR -5 583 522 2181 100 0 55 chr13 34341777 34342106 -85402792 + AluSx SINE Alu 1 311 -1 1815 140 3 17 chr13 34342206 34342499 -85402399 + MER1B DNA MER1_type 51 339 0 293 392 48 0 chr13 34342522 34342688 -85402210 - L2 LINE L2 -743 2571 2398 244 362 79 22 chr13 34342706 34342935 -85401963 - MIR SINE MIR -1 261 20 489 301 80 0 chr13 34342956 34343155 -85401743 - L2 LINE L2 -926 2388 2174 26 0 0 0 chr13 34344247 34344273 -85400625 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr13 34344814 34344844 -85400054 + AT_rich Low_complexity Low_complexity 1 30 0 2133 112 0 7 chr13 34344846 34345174 -85399724 + AluSx SINE Alu 1 312 0 329 314 18 71 chr13 34345220 34345243 -85399655 + MIR SINE MIR 28 51 -211 1291 205 144 28 chr13 34345243 34345570 -85399328 - MLT1A1 LTR MaLR 0 365 1 329 314 18 71 chr13 34345570 34345772 -85399126 + MIR SINE MIR 51 241 -21 1218 154 46 0 chr13 34345946 34346141 -85398757 + AluJb SINE Alu 6 209 -103 4615 186 264 47 chr13 34346143 34347496 -85397402 - MER52A LTR ERV1 -10 1745 1 607 163 0 0 chr13 34347496 34347588 -85397310 + AluSg/x SINE Alu 203 294 -15 634 216 76 22 chr13 34348611 34348796 -85396102 - MIR SINE MIR -1 261 67 24 0 0 0 chr13 34350013 34350037 -85394861 + AT_rich Low_complexity Low_complexity 1 24 0 314 136 227 0 chr13 34352294 34352360 -85392538 + MER69 DNA AcHobo 1 81 -2445 866 279 77 30 chr13 34352506 34352872 -85392026 - L1MC/D LINE L1 -2089 5719 5337 251 300 0 0 chr13 34353386 34353436 -85391462 - L2 LINE L2 -18 3254 3205 22 0 0 0 chr13 34353555 34353577 -85391321 + AT_rich Low_complexity Low_complexity 1 22 0 265 299 46 0 chr13 34354208 34354295 -85390603 - MIR SINE MIR -49 213 123 413 277 27 0 chr13 34354307 34354419 -85390479 + L2 LINE L2 3158 3272 0 228 35 0 0 chr13 34354878 34354907 -85389991 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 374 264 40 69 chr13 34355146 34355320 -85389578 - MIR SINE MIR -12 250 82 402 96 27 14 chr13 34356008 34356081 -85388817 - L1MC2 LINE L1 -13 6331 6258 335 78 20 0 chr13 34356213 34356264 -85388634 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 557 291 108 55 chr13 34356958 34357395 -85387503 - L2 LINE L2 0 3313 2854 3559 115 24 4 chr13 34357685 34358224 -85386674 - Tigger4(Zombi) DNA MER2_type 0 2731 2182 954 208 0 0 chr13 34358243 34358411 -85386487 - Tigger4(Zombi) DNA MER2_type -2559 172 5 371 339 78 0 chr13 34358676 34358791 -85386107 - L2 LINE L2 -32 3240 3117 2704 26 0 0 chr13 34359211 34359519 -85385379 + AluY SINE Alu 1 308 -3 183 318 136 23 chr13 34360250 34360426 -85384472 - L2 LINE L2 -5 3308 3113 220 350 38 0 chr13 34360867 34360947 -85383951 + L2 LINE L2 3172 3254 -59 381 58 0 0 chr13 34361302 34361354 -85383544 + (TG)n Simple_repeat Simple_repeat 2 53 0 732 205 19 68 chr13 34361394 34361599 -85383299 - MIR SINE MIR -8 254 60 2852 219 68 24 chr13 34362214 34363146 -85381752 - Charlie2 DNA MER1_type -35 2827 1855 21 0 0 0 chr13 34363236 34363257 -85381641 + AT_rich Low_complexity Low_complexity 1 21 0 390 308 33 55 chr13 34365619 34365801 -85379097 - L2 LINE L2 -4 3309 3132 1501 169 4 0 chr13 34365816 34366053 -85378845 + AluSx SINE Alu 58 295 -17 27 0 0 26 chr13 34366117 34366132 -85378766 + AT_rich Low_complexity Low_complexity 1 15 -22 2312 94 0 7 chr13 34366132 34366429 -85378469 - AluSg SINE Alu -15 295 1 27 0 0 26 chr13 34366429 34366451 -85378447 + AT_rich Low_complexity Low_complexity 15 37 0 186 43 0 0 chr13 34366557 34366580 -85378318 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 432 273 44 54 chr13 34366685 34366890 -85378008 + MARNA DNA Mariner 19 221 -365 337 185 0 158 chr13 34367043 34367182 -85377716 - LTR41 LTR ERVL -8 765 648 2216 121 0 3 chr13 34367182 34367480 -85377418 + AluSx SINE Alu 1 297 -15 919 224 133 8 chr13 34367567 34367830 -85377068 - LTR41 LTR ERVL -477 296 1 288 276 81 65 chr13 34368572 34368695 -85376203 - MIR SINE MIR -108 154 30 257 288 50 12 chr13 34369171 34369251 -85375647 - MLT1J LTR MaLR -193 318 236 1134 195 23 9 chr13 34369411 34369632 -85375266 + MER58A DNA MER1_type 1 224 0 662 292 88 12 chr13 34371187 34371691 -85373207 - MLT1L LTR MaLR -15 600 1 255 376 51 17 chr13 34371756 34371873 -85373025 + L2 LINE L2 3136 3256 -16 533 338 129 34 chr13 34372059 34372408 -85372490 - L3 LINE CR1 -1192 385 4 1997 153 0 3 chr13 34372466 34372766 -85372132 - AluJb SINE Alu -13 299 1 224 208 0 0 chr13 34373045 34373093 -85371805 + L2 LINE L2 3266 3313 0 2629 205 41 21 chr13 34373305 34373872 -85371026 + MER119 DNA MER1_type 6 583 0 180 77 0 0 chr13 34374189 34374215 -85370683 + (CCTA)n Simple_repeat Simple_repeat 1 26 0 273 268 0 14 chr13 34375668 34375739 -85369159 + (CATA)n Simple_repeat Simple_repeat 2 71 0 252 405 63 0 chr13 34377697 34377808 -85367090 - L2 LINE L2 -21 3251 3134 271 337 79 0 chr13 34377942 34378043 -85366855 - L2 LINE L2 -211 3061 2953 608 239 138 6 chr13 34378160 34378327 -85366571 + MER5A DNA MER1_type 1 189 0 2432 41 0 50 chr13 34379208 34379528 -85365370 + AluY SINE Alu 1 304 -7 1161 248 35 4 chr13 34379567 34379821 -85365077 - MIR SINE MIR 0 262 1 1198 276 45 11 chr13 34380076 34380428 -85364470 - LTR16A LTR ERVL -20 430 67 711 243 50 6 chr13 34380455 34380636 -85364262 - MER5A DNA MER1_type 0 189 1 342 230 115 27 chr13 34381478 34381626 -85363272 - L1ME4a LINE L1 -1 6120 5960 289 290 11 0 chr13 34381675 34381768 -85363130 - L1ME4a LINE L1 -266 5855 5762 405 0 0 0 chr13 34382707 34382752 -85362146 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 31 44 0 0 chr13 34383184 34383229 -85361669 + AT_rich Low_complexity Low_complexity 1 45 0 1217 112 0 6 chr13 34383451 34383629 -85361269 - L1PA15 LINE L1 -3 6162 5986 214 242 144 45 chr13 34384488 34384620 -85360278 - L2 LINE L2 0 3313 3169 21 0 0 0 chr13 34385194 34385215 -85359683 + AT_rich Low_complexity Low_complexity 1 21 0 2202 89 0 0 chr13 34385655 34385966 -85358932 + AluSg SINE Alu 1 311 0 432 274 129 0 chr13 34386089 34386275 -85358623 - MLT1J1 LTR MaLR -236 210 1 464 306 107 19 chr13 34387500 34387716 -85357182 + MIR SINE MIR 28 262 0 1196 151 36 36 chr13 34388199 34388424 -85356474 - MER46A DNA MER2_type 0 236 12 820 248 51 23 chr13 34388427 34388641 -85356257 + MIR SINE MIR 16 235 -27 356 294 25 34 chr13 34389147 34389266 -85355632 - L2 LINE L2 -5 3267 3150 289 77 0 0 chr13 34389585 34389624 -85355274 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 2174 88 0 7 chr13 34389624 34389908 -85354990 - AluSg SINE Alu -1 320 1 21 0 0 0 chr13 34390791 34390812 -85354086 + AT_rich Low_complexity Low_complexity 1 21 0 310 253 0 0 chr13 34390858 34390933 -85353965 - MLT1L LTR MaLR 0 615 541 410 347 57 0 chr13 34391001 34391177 -85353721 + MIR SINE MIR 65 250 -12 26 30 0 0 chr13 34391310 34391343 -85353555 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr13 34391451 34391474 -85353424 + AT_rich Low_complexity Low_complexity 1 23 0 477 121 0 0 chr13 34392288 34392393 -85352505 - AluSg/x SINE Alu 0 317 213 290 265 176 0 chr13 34392831 34392933 -85351965 - L2 LINE L2 0 3272 3153 395 260 31 0 chr13 34393690 34393786 -85351112 - MIR SINE MIR 0 262 164 291 161 0 0 chr13 34393955 34394011 -85350887 + A-rich Low_complexity Low_complexity 1 56 0 888 143 0 0 chr13 34394178 34394304 -85350594 + FLAM_C SINE Alu 1 126 -17 1926 101 58 0 chr13 34394332 34394608 -85350290 - AluSq SINE Alu -15 298 7 312 280 104 76 chr13 34395158 34395515 -85349383 - L1MC4 LINE L1 -145 7897 7531 1918 146 3 16 chr13 34395675 34395991 -85348907 - AluSx SINE Alu 0 312 1 1054 301 150 7 chr13 34396487 34396926 -85347972 - MLT1K LTR MaLR -16 572 71 233 261 0 34 chr13 34396994 34397113 -85347785 - L1M LINE L1 -792 5392 5278 25 0 0 0 chr13 34397214 34397239 -85347659 + AT_rich Low_complexity Low_complexity 1 25 0 231 300 89 0 chr13 34397252 34397342 -85347556 - L2 LINE L2 -1 3312 3215 213 293 182 0 chr13 34397789 34397888 -85347010 + MIR3 SINE MIR 70 186 -22 714 178 0 16 chr13 34397948 34398077 -85346821 + FLAM_C SINE Alu 1 127 -16 1508 167 79 24 chr13 34398320 34398661 -85346237 - MER46B DNA MER2_type 0 236 2 21 0 0 0 chr13 34399226 34399247 -85345651 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 34399949 34399970 -85344928 + AT_rich Low_complexity Low_complexity 1 21 0 3415 24 0 1 chr13 34400684 34401121 -85343777 - L1P1 LINE L1 -490 5665 5230 2851 43 0 0 chr13 34401123 34401494 -85343404 + L1PA2 LINE L1 5808 6178 0 2218 78 0 0 chr13 34401579 34401896 -85343002 + AluY SINE Alu 1 317 0 23 33 0 0 chr13 34402517 34402547 -85342351 + AT_rich Low_complexity Low_complexity 1 30 0 1350 186 16 51 chr13 34403889 34404062 -85340836 - AluJo SINE Alu -11 301 142 2386 99 0 0 chr13 34404062 34404374 -85340524 - AluSx SINE Alu 0 312 1 1350 186 16 51 chr13 34404374 34404512 -85340386 - AluJo SINE Alu -170 142 1 568 328 164 42 chr13 34404663 34405585 -85339313 + L2 LINE L2 1653 2686 -628 1574 153 15 37 chr13 34407457 34407783 -85337115 - MER33 DNA MER1_type 0 324 6 25 0 0 0 chr13 34408125 34408150 -85336748 + AT_rich Low_complexity Low_complexity 1 25 0 227 258 164 47 chr13 34408867 34408995 -85335903 + MIR SINE MIR 114 256 -6 261 265 214 0 chr13 34410481 34410579 -85334319 - L2 LINE L2 -8 3264 3146 265 217 103 143 chr13 34410633 34410836 -85334062 - MIR SINE MIR -28 234 40 585 309 125 57 chr13 34411857 34412379 -85332519 - L2 LINE L2 0 3272 2719 185 246 175 0 chr13 34412652 34412709 -85332189 - MIR SINE MIR -57 151 85 396 0 0 0 chr13 34414521 34414565 -85330333 + (CA)n Simple_repeat Simple_repeat 1 44 0 658 292 114 17 chr13 34415038 34415584 -85329314 - L1MC4a LINE L1 -369 5796 5272 372 94 0 0 chr13 34415652 34415705 -85329193 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr13 34416195 34416217 -85328681 + AT_rich Low_complexity Low_complexity 1 22 0 307 256 139 22 chr13 34417148 34417285 -85327613 - MIR SINE MIR -77 185 33 716 261 61 13 chr13 34417310 34417540 -85327358 - MLT1H LTR MaLR -308 241 1 307 256 139 22 chr13 34418130 34418267 -85326631 - MIR SINE MIR -77 185 33 716 261 61 13 chr13 34418292 34418522 -85326376 - MLT1H LTR MaLR -308 241 1 263 258 155 97 chr13 34418538 34418848 -85326050 - MLT1H-int LTR MaLR -18 1353 1026 271 309 75 60 chr13 34419474 34419726 -85325172 - MLT1H-int LTR MaLR -827 544 289 533 267 109 70 chr13 34419832 34420345 -85324553 - MLT1H LTR MaLR 0 549 17 2050 144 21 21 chr13 34420512 34420938 -85323960 - LTR23 LTR ERV1 0 467 10 385 272 114 19 chr13 34421160 34421318 -85323580 - MIR SINE MIR -54 208 36 1941 158 0 0 chr13 34421449 34421753 -85323145 + AluSx SINE Alu 1 304 -8 338 264 224 17 chr13 34421838 34422012 -85322886 - L2 LINE L2 0 3313 3104 2282 119 0 0 chr13 34422036 34422346 -85322552 + AluSg SINE Alu 1 310 0 800 299 27 14 chr13 34422377 34422624 -85322274 + MIR SINE MIR 3 252 -10 192 346 0 0 chr13 34423805 34423857 -85321041 - L2 LINE L2 -16 3256 3205 1064 193 0 33 chr13 34427603 34427815 -85317083 - AluJo SINE Alu -12 300 96 254 309 10 31 chr13 34427970 34428067 -85316831 - L2 LINE L2 0 3313 3219 9757 98 61 30 chr13 34428132 34429195 -85315703 - MER4-int LTR ERV1 -961 5637 4502 2379 79 13 0 chr13 34429195 34429500 -85315398 - AluY SINE Alu 0 311 3 9757 98 61 30 chr13 34429500 34430104 -85314794 - MER4-int LTR ERV1 -2096 4502 3918 839 134 134 56 chr13 34430092 34430324 -85314574 - MER4-int LTR ERV1 -3267 3331 3082 * 3454 202 58 11 chr13 34430431 34430526 -85314372 - L1M4 LINE L1 -639 5545 5456 1376 163 104 31 chr13 34430526 34430815 -85314083 - AluJo SINE Alu -2 310 1 3454 202 58 11 chr13 34430815 34431659 -85313239 - L1M4 LINE L1 -728 5456 4576 1420 208 31 0 chr13 34431659 34431952 -85312946 + MER58B DNA MER1_type 40 341 0 235 260 240 10 chr13 34432216 34432316 -85312582 - MIR3 SINE MIR -5 203 81 2438 87 32 9 chr13 34432401 34432917 -85311981 + MER51A LTR ERV1 1 604 -30 257 302 181 17 chr13 34433091 34433207 -85311691 - MIR SINE MIR -121 141 7 1130 154 0 75 chr13 34434460 34434687 -85310211 + AluJb SINE Alu 100 309 -3 1730 209 73 65 chr13 34434711 34435640 -85309258 + L1MD1 LINE L1 4906 5845 -397 3504 194 69 18 chr13 34435682 34436382 -85308516 - L1MB7 LINE L1 -9 6175 5431 2439 70 0 0 chr13 34436382 34436683 -85308215 - AluY SINE Alu -10 301 1 3504 194 69 18 chr13 34436683 34436746 -85308152 - L1MB7 LINE L1 -753 5431 5373 5296 145 36 30 chr13 34437176 34437860 -85307038 - L1MA7 LINE L1 0 6291 5612 279 0 0 0 chr13 34437860 34437891 -85307007 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1531 157 84 0 chr13 34437891 34438152 -85306746 - AluJb SINE Alu -29 283 1 5296 145 36 30 chr13 34438152 34438484 -85306414 - L1MA7 LINE L1 -678 5613 5268 213 294 29 0 chr13 34439216 34439284 -85305614 - MIR SINE MIR -18 244 175 1263 143 55 73 chr13 34439287 34439560 -85305338 + AluJb SINE Alu 35 302 -10 2230 93 0 3 chr13 34439606 34439897 -85305001 - AluSx SINE Alu -22 290 1 192 239 65 0 chr13 34440342 34440388 -85304510 - MIR SINE MIR -58 150 102 22 0 0 0 chr13 34442666 34442688 -85302210 + AT_rich Low_complexity Low_complexity 1 22 0 911 151 13 7 chr13 34443511 34443663 -85301235 - LTR32 LTR ERVL 0 471 319 1804 170 9 32 chr13 34443671 34444012 -85300886 - LTR32 LTR ERVL -125 346 14 209 315 0 0 chr13 34444081 34444135 -85300763 - L2 LINE L2 0 3272 3219 265 329 88 7 chr13 34444194 34444331 -85300567 - L2 LINE L2 -1 3312 3165 1469 271 126 11 chr13 34444353 34445064 -85299834 - L2 LINE L2 -5 3308 2513 256 355 127 0 chr13 34445300 34445410 -85299488 + L2 LINE L2 3128 3251 -21 1043 257 51 46 chr13 34445519 34445931 -85298967 + L2 LINE L2 2900 3313 0 296 333 42 8 chr13 34446028 34446148 -85298750 - L2 LINE L2 -13 3300 3177 34 55 0 0 chr13 34447776 34447831 -85297067 + AT_rich Low_complexity Low_complexity 1 55 0 314 281 61 43 chr13 34447900 34448178 -85296720 + L1ME LINE L1 3338 3647 -2499 357 93 0 0 chr13 34448279 34448333 -85296565 + (TG)n Simple_repeat Simple_repeat 1 54 0 227 274 63 11 chr13 34448363 34448458 -85296440 + L1ME LINE L1 4063 4162 -1984 447 323 100 31 chr13 34448491 34448872 -85296026 + L1ME LINE L1 4301 4707 -1439 281 329 0 20 chr13 34449221 34449373 -85295525 + L1P LINE L1 4885 5033 -1113 1799 153 0 27 chr13 34449587 34449882 -85295016 + AluJb SINE Alu 1 287 -25 21 0 0 0 chr13 34449882 34449903 -85294995 + AT_rich Low_complexity Low_complexity 1 21 0 584 292 30 15 chr13 34449903 34450167 -85294731 + L1ME LINE L1 5282 5549 -615 26 30 0 0 chr13 34451411 34451444 -85293454 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr13 34452370 34452405 -85292493 + AT_rich Low_complexity Low_complexity 1 35 0 1838 154 3 3 chr13 34453021 34453307 -85291591 + AluJb SINE Alu 4 289 -23 204 115 16 33 chr13 34454414 34454475 -85290423 + (TAAAA)n Simple_repeat Simple_repeat 3 62 0 29 28 0 0 chr13 34454757 34454793 -85290105 + AT_rich Low_complexity Low_complexity 1 36 0 196 328 0 0 chr13 34455479 34455540 -85289358 + MIR SINE MIR 79 139 -123 207 0 0 0 chr13 34456021 34456044 -85288854 + (A)n Simple_repeat Simple_repeat 1 23 0 416 191 43 0 chr13 34456690 34456784 -85288114 + MER5A DNA MER1_type 4 101 -88 387 145 0 0 chr13 34456891 34456953 -85287945 - L1MC5 LINE L1 -63 7898 7837 1554 167 60 0 chr13 34456991 34457272 -85287626 - AluSx SINE Alu -12 300 3 183 292 46 0 chr13 34458156 34458221 -85286677 - L2 LINE L2 -151 3121 3054 457 137 0 84 chr13 34458286 34458381 -85286517 + AluSg SINE Alu 4 90 -220 317 342 8 8 chr13 34458452 34458569 -85286329 + MIR SINE MIR 54 170 -92 2273 80 11 0 chr13 34458938 34459224 -85285674 + AluY SINE Alu 1 289 -22 203 211 0 35 chr13 34461465 34461522 -85283376 + CT-rich Low_complexity Low_complexity 3 57 0 4478 152 25 32 chr13 34462035 34462417 -85282481 + L1MB2 LINE L1 5349 5732 -439 2426 87 0 0 chr13 34462417 34462717 -85282181 + AluSg SINE Alu 1 300 -10 4478 152 25 32 chr13 34462717 34463157 -85281741 + L1MB2 LINE L1 5732 6166 -5 260 236 14 0 chr13 34463174 34463246 -85281652 - LTR33 LTR ERVL -53 468 396 378 274 194 30 chr13 34463276 34463477 -85281421 - LTR33 LTR ERVL -233 288 55 27 29 0 0 chr13 34464108 34464142 -85280756 + AT_rich Low_complexity Low_complexity 1 34 0 260 381 24 0 chr13 34465301 34465385 -85279513 - MER91A DNA MER1_type -110 86 1 24 0 0 0 chr13 34465957 34465981 -85278917 + AT_rich Low_complexity Low_complexity 1 24 0 1453 223 63 12 chr13 34466126 34466557 -85278341 + L1ME3 LINE L1 5561 6013 -149 277 146 0 0 chr13 34466596 34466644 -85278254 - L1ME3 LINE L1 -74 6088 6041 * 326 230 0 103 chr13 34466636 34466762 -85278136 + L1ME3 LINE L1 6020 6132 -30 589 234 24 18 chr13 34467102 34467269 -85277629 + MER104 DNA Tc2 7 174 -6 333 294 150 19 chr13 34467555 34467715 -85277183 - Charlie8 DNA MER1_type -2233 184 4 459 283 17 17 chr13 34467721 34467841 -85277057 + L2 LINE L2 3194 3313 0 199 222 0 0 chr13 34468274 34468310 -85276588 + MIR SINE MIR 222 257 -5 212 259 0 0 chr13 34469352 34469406 -85275492 - L2 LINE L2 -4 3309 3256 821 243 99 0 chr13 34471678 34471900 -85272998 + MIR SINE MIR 8 251 -11 377 244 13 13 chr13 34472310 34472388 -85272510 - L2 LINE L2 -6 3266 3189 2237 108 7 0 chr13 34472442 34472739 -85272159 - AluSg SINE Alu -11 299 1 1558 178 51 7 chr13 34472759 34473035 -85271863 - AluJo SINE Alu -21 291 4 243 0 0 0 chr13 34473055 34473082 -85271816 + (T)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr13 34473358 34473385 -85271513 + AT_rich Low_complexity Low_complexity 1 27 0 1435 104 22 5 chr13 34473685 34473907 -85270991 + L1PA10 LINE L1 5943 6168 0 258 274 11 53 chr13 34474862 34474957 -85269941 + L2 LINE L2 3215 3305 -8 391 318 48 8 chr13 34475115 34475241 -85269657 - L2 LINE L2 -4 3309 3179 1672 103 0 0 chr13 34475359 34475582 -85269316 + AluSg/x SINE Alu 72 294 -18 434 268 61 33 chr13 34476274 34476487 -85268411 - L1MCc LINE L1 -6180 243 25 1188 46 7 0 chr13 34477073 34477225 -85267673 + L1PA6 LINE L1 6002 6154 0 2445 58 0 3 chr13 34477226 34477520 -85267378 + AluY SINE Alu 1 293 -18 2457 45 0 0 chr13 34477646 34477937 -85266961 - AluY SINE Alu -20 291 1 2327 65 0 16 chr13 34478269 34478576 -85266322 - AluY SINE Alu -9 302 1 26 50 0 0 chr13 34480411 34480451 -85264447 + AT_rich Low_complexity Low_complexity 1 40 0 208 325 113 12 chr13 34481126 34481206 -85263692 - L2 LINE L2 0 3272 3185 21 57 0 0 chr13 34482873 34482908 -85261990 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr13 34483000 34483030 -85261868 + AT_rich Low_complexity Low_complexity 1 30 0 238 318 118 0 chr13 34483410 34483495 -85261403 - L2 LINE L2 -22 3291 3197 197 243 135 0 chr13 34485853 34485927 -85258971 + MIR SINE MIR 151 234 -28 21 0 0 0 chr13 34487610 34487631 -85257267 + AT_rich Low_complexity Low_complexity 1 21 0 3368 135 49 22 chr13 34487933 34488562 -85256336 - L1MA4 LINE L1 -6 6294 5649 25 0 0 0 chr13 34488661 34488686 -85256212 + AT_rich Low_complexity Low_complexity 1 25 0 399 271 83 44 chr13 34489564 34489745 -85255153 + MIR SINE MIR 49 236 -26 438 248 66 15 chr13 34489784 34489921 -85254977 - MIR SINE MIR -45 217 74 2004 134 0 3 chr13 34490525 34490824 -85254074 - AluSq SINE Alu -15 298 1 209 345 0 0 chr13 34490858 34490913 -85253985 + MIR SINE MIR 35 89 -119 * 218 267 13 27 chr13 34490906 34490981 -85253917 - L2 LINE L2 -330 2942 2869 195 100 0 0 chr13 34493212 34493242 -85251656 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 220 327 0 20 chr13 34493519 34493620 -85251278 + GA-rich Low_complexity Low_complexity 2 100 0 23 0 0 0 chr13 34494286 34494309 -85250589 + AT_rich Low_complexity Low_complexity 1 23 0 281 207 179 28 chr13 34494906 34495051 -85249847 + Charlie7 DNA MER1_type 2429 2595 -17 197 290 0 89 chr13 34495217 34495341 -85249557 - L2 LINE L2 -946 2368 2256 212 273 26 65 chr13 34498615 34498692 -85246206 - MER5A DNA MER1_type -1 188 115 2007 118 3 13 chr13 34499060 34499364 -85245534 - AluSx SINE Alu -11 301 1 209 333 69 10 chr13 34500625 34500727 -85244171 + MIR SINE MIR 120 227 -35 192 310 17 0 chr13 34500698 34500756 -85244142 + L2 LINE L2 3203 3261 -11 * 458 318 48 63 chr13 34500912 34501164 -85243734 + MLT1K LTR MaLR 156 403 -185 245 281 30 52 chr13 34501434 34501569 -85243329 + L1ME3A LINE L1 5596 5727 -435 685 224 37 70 chr13 34501585 34501826 -85243072 + L1ME3A LINE L1 5931 6163 -7 1535 168 84 4 chr13 34502101 34502375 -85242523 - MLT1A1 LTR MaLR 0 365 70 391 315 0 0 chr13 34502385 34502496 -85242402 + MIR SINE MIR 32 142 -66 2107 119 10 0 chr13 34502856 34503159 -85241739 - AluSx SINE Alu -6 306 1 1543 107 17 34 chr13 34503207 34503441 -85241457 - MER30 DNA MER1_type 0 230 1 255 252 26 61 chr13 34503718 34503833 -85241065 - MIR3 SINE MIR -32 176 66 302 301 75 11 chr13 34503969 34504062 -85240836 + L1MD3 LINE L1 6570 6668 -1327 * 345 287 46 0 chr13 34504054 34504141 -85240757 - L1MC4 LINE L1 -1337 6705 6615 334 200 0 36 chr13 34504159 34504269 -85240629 + (CATATA)n Simple_repeat Simple_repeat 4 109 0 1092 230 144 42 chr13 34504269 34504581 -85240317 - MLT2B1 LTR ERVL -40 480 111 1766 140 3 28 chr13 34504581 34504867 -85240031 - AluSx SINE Alu -32 280 2 1092 230 144 42 chr13 34504867 34504984 -85239914 - MLT2B1 LTR ERVL -409 111 7 2215 119 0 0 chr13 34506071 34506423 -85238475 + AluSx SINE Alu 1 352 0 225 278 35 35 chr13 34506482 34506597 -85238301 + L1MEd LINE L1 60 174 -5945 293 196 0 0 chr13 34506726 34506777 -85238121 + Tigger5 DNA MER2_type 1 51 -2272 360 216 34 11 chr13 34506784 34506872 -85238026 + Tigger5 DNA MER2_type 2234 2323 0 1775 98 0 16 chr13 34507199 34507445 -85237453 + AluSx SINE Alu 12 253 -59 483 241 48 54 chr13 34507472 34507638 -85237260 - MIR SINE MIR -16 246 82 2012 113 0 30 chr13 34507969 34508270 -85236628 - AluSx SINE Alu -20 292 1 263 349 0 0 chr13 34508388 34508474 -85236424 - L2 LINE L2 0 3313 3228 2623 135 114 27 chr13 34509695 34510155 -85234743 - LTR12 LTR ERV1 -227 487 1 1430 160 27 4 chr13 34510155 34510418 -85234480 - AluJo SINE Alu -33 279 11 1870 112 3 26 chr13 34510442 34510747 -85234151 - AluY SINE Alu -13 298 1 198 266 62 86 chr13 34511148 34511191 -85233707 - L3 LINE CR1 -156 1421 1379 1813 138 0 49 chr13 34511191 34511517 -85233381 - AluJb SINE Alu -2 310 1 198 266 62 86 chr13 34511517 34511601 -85233297 - L3 LINE CR1 -198 1379 1297 278 239 28 0 chr13 34512291 34512362 -85232536 + L1MEd LINE L1 6 78 -6041 432 327 116 56 chr13 34512577 34513060 -85231838 + L1MEd LINE L1 329 840 -5279 3106 167 70 27 chr13 34513106 34513693 -85231205 - LTR9 LTR ERV1 0 612 1 240 278 8 23 chr13 34513706 34513839 -85231059 + A-rich Low_complexity Low_complexity 4 134 0 2017 146 36 41 chr13 34514072 34514581 -85230317 + MLT2A2 LTR ERVL 1 416 -37 1787 116 90 0 chr13 34514582 34514859 -85230039 + AluSg SINE Alu 1 302 -8 991 193 104 56 chr13 34515954 34516132 -85228766 - MLT1B LTR MaLR 0 390 222 2041 133 0 13 chr13 34516132 34516448 -85228450 - AluSx SINE Alu 0 312 1 991 193 104 56 chr13 34516448 34516711 -85228187 - MLT1B LTR MaLR -168 222 3 185 326 47 12 chr13 34516797 34516883 -85228015 + MIR SINE MIR 20 108 -154 1612 184 25 69 chr13 34518154 34518562 -85226336 + MLT1B LTR MaLR 1 390 0 1330 195 110 74 chr13 34518792 34519239 -85225659 + MLT1C LTR MaLR 1 463 -4 217 240 0 40 chr13 34519649 34519699 -85225199 + L2 LINE L2 3225 3272 0 446 245 224 47 chr13 34519742 34520193 -85224705 - MLT1F LTR MaLR -5 588 4 195 310 28 0 chr13 34520318 34520389 -85224509 - MIR SINE MIR -42 220 148 1947 115 38 0 chr13 34520488 34520776 -85224122 - AluSx SINE Alu -13 299 1 1546 162 6 38 chr13 34522302 34522617 -85222281 + AluJo SINE Alu 1 305 -7 700 173 0 8 chr13 34525574 34525701 -85219197 + FLAM_C SINE Alu 3 128 -5 2001 135 3 3 chr13 34525712 34526024 -85218874 + AluSx SINE Alu 1 312 0 1150 214 158 15 chr13 34526333 34526740 -85218158 + MLT2B1 LTR ERVL 1 464 0 923 197 25 20 chr13 34526901 34527099 -85217799 + MLT1D LTR MaLR 8 206 -299 3650 192 38 57 chr13 34527114 34527735 -85217163 + L1MB8 LINE L1 4996 5584 -594 309 51 0 0 chr13 34527735 34527774 -85217124 + (TG)n Simple_repeat Simple_repeat 1 39 0 3650 192 38 57 chr13 34527774 34528357 -85216541 + L1MB8 LINE L1 5584 6177 -1 1814 213 44 14 chr13 34528370 34528806 -85216092 - L1MC4a LINE L1 -422 7386 6938 183 388 0 0 chr13 34528823 34528908 -85215990 - L2 LINE L2 0 3272 3188 265 323 119 55 chr13 34529304 34529741 -85215157 - L2 LINE L2 -814 2500 2036 2182 67 0 11 chr13 34530000 34530283 -85214615 + AluSx SINE Alu 1 280 -32 216 86 0 0 chr13 34530283 34530318 -85214580 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1840 135 0 21 chr13 34531352 34531678 -85213220 - AluSx SINE Alu 0 320 1 1294 255 28 28 chr13 34532008 34532146 -85212752 + LTR16A LTR ERVL 68 205 -245 2787 81 3 18 chr13 34532146 34532527 -85212371 + THE1C LTR MaLR 1 375 0 1294 255 28 28 chr13 34532527 34532749 -85212149 + LTR16A LTR ERVL 204 428 -22 940 197 22 0 chr13 34532757 34532940 -85211958 + MER53 DNA DNA 3 189 0 437 230 0 0 chr13 34534223 34534323 -85210575 - L1MB7 LINE L1 -8 6176 6077 427 194 0 0 chr13 34534494 34534566 -85210332 + Tigger7 DNA MER2_type 272 343 -207 * 947 129 14 7 chr13 34534561 34534708 -85210190 + Tigger7 DNA MER2_type 2439 2586 -1 1982 148 0 0 chr13 34534732 34535037 -85209861 - AluSx SINE Alu -7 305 1 277 270 56 0 chr13 34535057 34535146 -85209752 - MLT1J LTR MaLR -416 95 2 327 282 115 70 chr13 34535180 34535510 -85209388 - MLT2C1 LTR ERVL 0 397 53 * 557 253 51 13 chr13 34535384 34535542 -85209356 - MLT1E3 LTR MaLR -420 204 41 * 583 224 52 15 chr13 34535539 34535673 -85209225 - MLT2F LTR ERVL -524 139 1 231 341 0 0 chr13 34535690 34535772 -85209126 - MLT1K LTR MaLR -324 264 183 211 396 32 19 chr13 34536538 34536692 -85208206 + L2 LINE L2 3113 3268 -4 247 174 0 0 chr13 34537005 34537051 -85207847 + L2 LINE L2 3226 3271 -1 423 223 19 167 chr13 34537182 34537397 -85207501 - MIR SINE MIR -14 248 66 2239 213 63 29 chr13 34537615 34538039 -85206859 + L1ME1 LINE L1 5590 6039 -127 745 192 0 0 chr13 34538039 34538169 -85206729 - FLAM_C SINE Alu -3 130 1 2239 213 63 29 chr13 34538169 34538297 -85206601 + L1ME1 LINE L1 6039 6161 -5 359 294 61 31 chr13 34539799 34539962 -85204936 + MIR SINE MIR 84 251 -11 189 359 33 0 chr13 34539963 34540055 -85204843 + MIR SINE MIR 21 115 -93 367 167 0 64 chr13 34541638 34541716 -85203182 + ORSL DNA AcHobo 1 73 -202 461 164 82 74 chr13 34541718 34541843 -85203055 - L1PB4 LINE L1 -6 6150 6023 1322 115 0 0 chr13 34541947 34542130 -85202768 - AluSg/x SINE Alu -5 307 125 180 0 0 0 chr13 34544600 34544620 -85200278 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 276 193 0 18 chr13 34544848 34544905 -85199993 + L2 LINE L2 3255 3310 -3 198 0 0 0 chr13 34544942 34544964 -85199934 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 693 171 34 0 chr13 34546297 34546414 -85198484 + FLAM_A SINE Alu 11 131 -11 258 81 0 0 chr13 34547160 34547197 -85197701 + (TG)n Simple_repeat Simple_repeat 2 38 0 553 329 24 24 chr13 34549445 34549658 -85195240 - MIR SINE MIR -4 258 46 846 146 7 36 chr13 34549806 34550010 -85194888 + FLAM_C SINE Alu 1 200 0 1691 218 105 18 chr13 34551048 34551648 -85193250 - Charlie2 DNA MER1_type -11 2851 2200 705 292 42 39 chr13 34551626 34551845 -85193053 - Charlie2 DNA MER1_type -2469 313 91 * 2272 120 3 0 chr13 34551845 34552154 -85192744 - AluSx SINE Alu -2 310 1 705 292 42 39 chr13 34552154 34552246 -85192652 - Charlie2 DNA MER1_type -2691 91 1 322 269 170 6 chr13 34552311 34552482 -85192416 + MIR SINE MIR 5 203 -59 2390 100 3 0 chr13 34552566 34552877 -85192021 + AluSx SINE Alu 1 312 0 541 329 38 14 chr13 34553399 34553612 -85191286 + MIR SINE MIR 20 237 -25 458 209 9 0 chr13 34553612 34553717 -85191181 + L1M4 LINE L1 4109 4214 -1932 189 107 0 0 chr13 34554580 34554608 -85190290 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 336 239 0 54 chr13 34554776 34554868 -85190030 + MLT1B LTR MaLR 1 87 -287 3053 146 35 28 chr13 34554874 34555671 -85189227 - MER21A LTR ERV1 -6 925 1 1017 231 50 43 chr13 34555671 34555970 -85188928 + MLT1B LTR MaLR 89 389 -1 2130 118 16 7 chr13 34556385 34556689 -85188209 - AluSx SINE Alu -5 307 1 520 152 8 104 chr13 34557207 34557276 -85187622 + L1MB5 LINE L1 6056 6109 -65 2259 111 0 0 chr13 34557276 34557565 -85187333 - AluSx SINE Alu -23 289 1 520 152 8 104 chr13 34557565 34557620 -85187278 + L1MB5 LINE L1 6109 6168 -6 189 0 0 0 chr13 34557620 34557641 -85187257 + (T)n Simple_repeat Simple_repeat 1 21 0 583 225 139 6 chr13 34558672 34558845 -85186053 + L2 LINE L2 2600 2795 -519 559 226 158 0 chr13 34558876 34559022 -85185876 - MER39 LTR ERV1 -279 428 260 277 293 110 12 chr13 34558999 34559081 -85185817 - MER39 LTR ERV1 -574 133 44 * 1458 169 43 14 chr13 34559081 34559360 -85185538 + AluJo SINE Alu 1 287 -25 195 69 0 0 chr13 34559375 34559404 -85185494 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 298 245 0 0 chr13 34559440 34559493 -85185405 - MER39 LTR ERV1 -654 53 1 247 202 222 61 chr13 34559493 34559592 -85185306 + L2 LINE L2 3192 3306 -7 2125 138 0 0 chr13 34559672 34559968 -85184930 - AluSx SINE Alu -16 296 1 878 274 16 12 chr13 34559969 34560217 -85184681 - MER82 DNA MER2_type -23 630 382 3293 83 25 23 chr13 34560636 34561079 -85183819 + MLT2A1 LTR ERVL 1 444 0 2567 204 72 63 chr13 34561334 34561581 -85183317 + MER72 LTR ERV1 5 248 -474 2388 134 34 17 chr13 34561581 34561939 -85182959 + THE1B LTR MaLR 1 364 0 2567 204 72 63 chr13 34561939 34562353 -85182545 + MER72 LTR ERV1 248 675 -47 2046 145 0 0 chr13 34562353 34562649 -85182249 + AluSx SINE Alu 1 296 -16 2567 204 72 63 chr13 34562649 34562697 -85182201 + MER72 LTR ERV1 675 721 -1 394 182 0 15 chr13 34562702 34562765 -85182133 + MER34C LTR ERV1 5 66 -519 2027 97 7 17 chr13 34562765 34563065 -85181833 - MER41A LTR ERV1 0 554 258 608 172 8 30 chr13 34563307 34563441 -85181457 - LTR9 LTR ERV1 -172 440 310 1259 124 143 42 chr13 34563588 34563847 -85181051 - LTR9 LTR ERV1 -327 285 1 1925 81 19 0 chr13 34563847 34564106 -85180792 - MER41A LTR ERV1 -290 264 1 2203 162 58 75 chr13 34564106 34564638 -85180260 + MER34C LTR ERV1 63 585 0 1461 203 110 42 chr13 34564749 34565202 -85179696 - LTR29 LTR ERV1 -2 620 137 303 289 0 0 chr13 34565207 34565283 -85179615 - MER34 LTR ERV1 -446 96 21 1315 193 26 30 chr13 34565440 34565615 -85179283 + MER49 LTR ERV1 25 200 -723 4516 78 9 2 chr13 34565615 34566165 -85178733 - MER41A LTR ERV1 0 554 1 1315 193 26 30 chr13 34566165 34566259 -85178639 + MER49 LTR ERV1 200 293 -630 1606 200 31 31 chr13 34566295 34566650 -85178248 + MER4D LTR ERV1 549 903 0 2139 183 17 32 chr13 34566924 34567227 -85177671 - L1MB7 LINE L1 0 6184 5889 3851 151 48 5 chr13 34567227 34567836 -85177062 - MER41B LTR ERV1 0 635 1 2139 183 17 32 chr13 34567836 34567996 -85176902 - L1MB7 LINE L1 -295 5889 5728 276 176 50 34 chr13 34568233 34568352 -85176546 + LTR48 LTR ERV1 433 536 -6 1060 194 31 15 chr13 34568357 34568645 -85176253 - L1MB7 LINE L1 -447 5731 5374 1418 208 49 3 chr13 34568684 34568972 -85175926 - AluJo SINE Alu -11 301 1 221 258 0 48 chr13 34569524 34569586 -85175312 + L2 LINE L2 1886 1944 -1370 3492 144 62 17 chr13 34569627 34569717 -85175181 - LTR31 LTR ERV1 0 619 535 522 31 0 0 chr13 34569717 34569781 -85175117 + (CAAG)n Simple_repeat Simple_repeat 1 64 0 3492 144 62 17 chr13 34569781 34570282 -85174616 - LTR31 LTR ERV1 -84 535 1 11920 169 46 21 chr13 34570358 34573082 -85171816 - L1MA3 LINE L1 -1 7723 5070 4085 101 28 14 chr13 34573082 34573595 -85171303 + L1PB1 LINE L1 5571 6100 -51 2079 120 43 7 chr13 34573595 34573895 -85171003 + AluSx SINE Alu 1 311 -1 4085 101 28 14 chr13 34573895 34573947 -85170951 + L1PB1 LINE L1 6100 6150 -1 11920 169 46 21 chr13 34573947 34574409 -85170489 - L1MA3 LINE L1 -2654 5070 4621 2565 160 34 14 chr13 34574409 34574827 -85170071 - MSTB LTR MaLR 0 426 1 11920 169 46 21 chr13 34574827 34576656 -85168242 - L1MA3 LINE L1 -3103 4621 2570 637 302 143 47 chr13 34576741 34577094 -85167804 + L2 LINE L2 2260 2578 -735 3523 142 38 28 chr13 34577094 34577698 -85167200 - MER4B LTR ERV1 0 610 1 637 302 143 47 chr13 34577698 34577793 -85167105 + L2 LINE L2 2578 2663 -650 3261 146 66 9 chr13 34577793 34578356 -85166542 - LTR49 LTR ERV1 0 595 1 637 302 143 47 chr13 34578356 34578860 -85166038 + L2 LINE L2 2663 3313 0 198 367 102 9 chr13 34578905 34579131 -85165767 - L2 LINE L2 -565 2749 2503 2674 159 19 80 chr13 34579160 34579725 -85165173 + LTR8 LTR ERV1 158 688 -3 209 333 21 21 chr13 34579783 34579879 -85165019 - L2 LINE L2 -929 2385 2290 3577 128 10 2 chr13 34579951 34580461 -85164437 - MER75 DNA T2_type 0 514 1 3037 144 35 46 chr13 34580652 34581215 -85163683 + MER89 LTR ERV1 3 559 0 437 209 6 16 chr13 34583387 34583569 -85161329 + (CA)n Simple_repeat Simple_repeat 1 180 0 563 218 0 6 chr13 34583590 34583764 -85161134 + (CA)n Simple_repeat Simple_repeat 2 174 0 564 191 17 12 chr13 34583787 34583960 -85160938 + (CATA)n Simple_repeat Simple_repeat 1 174 0 563 226 3 0 chr13 34583965 34584292 -85160606 + (CA)n Simple_repeat Simple_repeat 1 328 0 378 222 0 17 chr13 34584325 34584501 -85160397 + (CA)n Simple_repeat Simple_repeat 1 173 0 420 258 0 0 chr13 34584520 34584698 -85160200 + (CA)n Simple_repeat Simple_repeat 2 179 0 612 228 0 7 chr13 34584718 34585022 -85159876 + (CA)n Simple_repeat Simple_repeat 1 302 0 560 215 12 0 chr13 34585027 34585199 -85159699 + (CATA)n Simple_repeat Simple_repeat 4 177 0 516 240 0 0 chr13 34585241 34585420 -85159478 + (CA)n Simple_repeat Simple_repeat 2 180 0 252 0 0 0 chr13 34586675 34586703 -85158195 + (A)n Simple_repeat Simple_repeat 1 28 0 311 277 67 111 chr13 34587431 34587817 -85157081 + L2 LINE L2 2877 3245 -27 720 142 59 16 chr13 34588325 34588578 -85156320 + CT-rich Low_complexity Low_complexity 1 264 0 202 128 64 0 chr13 34588590 34588637 -85156261 + CT-rich Low_complexity Low_complexity 2 51 0 282 299 0 19 chr13 34589388 34589495 -85155403 + 7SK RNA RNA 1 105 -88 229 236 91 36 chr13 34598932 34599042 -85145856 - L1ME LINE L1 -229 5892 5777 785 300 14 18 chr13 34599074 34599297 -85145601 - MIR SINE MIR -12 250 29 610 295 25 17 chr13 34599430 34599673 -85145225 - L1ME LINE L1 -449 5672 5451 432 333 55 52 chr13 34599932 34600262 -85144636 - L3 LINE CR1 -54 1523 1193 253 283 100 99 chr13 34600345 34600806 -85144092 - L3 LINE CR1 -587 990 476 25 0 0 0 chr13 34601352 34601377 -85143521 + AT_rich Low_complexity Low_complexity 1 25 0 303 140 0 0 chr13 34601410 34601460 -85143438 + (CATA)n Simple_repeat Simple_repeat 1 50 0 203 86 0 29 chr13 34601617 34601652 -85143246 + (CTCA)n Simple_repeat Simple_repeat 2 35 0 180 222 0 0 chr13 34603174 34603210 -85141688 + L3 LINE CR1 1456 1491 -86 205 156 0 0 chr13 34603825 34603857 -85141041 + (CA)n Simple_repeat Simple_repeat 2 33 0 249 321 45 52 chr13 34605263 34605397 -85139501 - MER5B DNA MER1_type -5 173 41 2338 100 3 0 chr13 34605425 34605725 -85139173 - AluSp SINE Alu -12 301 1 358 296 37 69 chr13 34606384 34606573 -85138325 - MIR SINE MIR -7 255 73 1805 158 3 22 chr13 34606882 34607198 -85137700 - AluSx SINE Alu -2 310 1 1259 136 0 25 chr13 34608332 34608530 -85136368 + AluJb SINE Alu 113 305 -7 429 292 61 37 chr13 34609279 34609449 -85135449 + MIR SINE MIR 23 192 -63 2036 132 0 10 chr13 34610302 34610609 -85134289 - AluSx SINE Alu 0 304 1 2080 129 3 0 chr13 34610620 34610907 -85133991 - AluSx SINE Alu -24 288 1 362 205 291 8 chr13 34611039 34611166 -85133732 + MER5A DNA MER1_type 27 189 0 1786 177 0 7 chr13 34611473 34611773 -85133125 - AluSx SINE Alu -14 298 1 770 117 50 0 chr13 34613391 34613511 -85131387 - L1MB3 LINE L1 -4 6179 6054 192 385 24 0 chr13 34613551 34613634 -85131264 + L2 LINE L2 2969 3053 -219 516 234 33 181 chr13 34613703 34614101 -85130797 - L2 LINE L2 -1 3312 2974 2294 79 3 25 chr13 34614813 34615129 -85129769 + AluY SINE Alu 1 309 -2 280 246 109 69 chr13 34615218 34615393 -85129505 + L2 LINE L2 2205 2386 -928 361 363 70 18 chr13 34615924 34615973 -85128925 + L2 LINE L2 3078 3123 -149 2183 174 9 0 chr13 34615973 34616318 -85128580 + MER7A DNA MER2_type 1 346 0 361 363 70 18 chr13 34616318 34616439 -85128459 + L2 LINE L2 3123 3257 -15 215 293 93 0 chr13 34617098 34617173 -85127725 + L2 LINE L2 3232 3313 0 361 60 20 0 chr13 34617373 34617423 -85127475 - Alu SINE Alu -252 51 1 862 225 63 28 chr13 34619959 34620212 -85124686 + L1ME3A LINE L1 5909 6170 0 329 170 32 11 chr13 34620610 34620704 -85124194 + (TA)n Simple_repeat Simple_repeat 2 97 0 26 30 0 0 chr13 34624536 34624569 -85120329 + AT_rich Low_complexity Low_complexity 1 33 0 233 224 0 0 chr13 34624919 34624968 -85119930 + A-rich Low_complexity Low_complexity 2 50 0 195 247 101 45 chr13 34625381 34625470 -85119428 - L3b LINE CR1 -147 1436 1343 427 215 103 9 chr13 34625659 34625766 -85119132 + L2 LINE L2 3197 3313 0 373 318 9 9 chr13 34625994 34626104 -85118794 - L2 LINE L2 0 3272 3163 2190 103 6 25 chr13 34627071 34627390 -85117508 + AluSp SINE Alu 1 313 0 1986 147 10 10 chr13 34627691 34628003 -85116895 + AluSx SINE Alu 1 312 0 25 0 0 0 chr13 34628456 34628481 -85116417 + AT_rich Low_complexity Low_complexity 1 25 0 306 241 72 33 chr13 34628669 34628816 -85116082 - MIR SINE MIR -51 211 61 180 0 0 0 chr13 34629074 34629094 -85115804 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 278 308 33 33 chr13 34629287 34629407 -85115491 + MIR SINE MIR 28 147 -115 270 315 11 0 chr13 34630330 34630422 -85114476 + L1ME LINE L1 5726 5818 -303 2407 86 0 0 chr13 34630740 34631041 -85113857 + AluSq SINE Alu 2 302 -11 1278 147 13 55 chr13 34631873 34632111 -85112787 - AluJo SINE Alu 0 312 85 252 0 0 0 chr13 34633090 34633118 -85111780 + (CA)n Simple_repeat Simple_repeat 1 28 0 263 313 76 15 chr13 34633736 34633867 -85111031 - MER91C DNA MER1_type -1 139 1 1870 147 0 11 chr13 34633929 34634214 -85110684 - AluJo SINE Alu -30 282 1 222 344 50 32 chr13 34634531 34634752 -85110146 + L2 LINE L2 2827 3051 -221 22 56 0 0 chr13 34638202 34638238 -85106660 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr13 34638789 34638835 -85106063 + AT_rich Low_complexity Low_complexity 1 46 0 293 197 16 0 chr13 34639201 34639262 -85105636 - L1ME4a LINE L1 -71 6050 5989 227 290 190 0 chr13 34640675 34640775 -85104123 - L2 LINE L2 0 3313 3195 1317 183 5 9 chr13 34640820 34641044 -85103854 - MER58A DNA MER1_type -1 223 1 337 302 84 11 chr13 34641344 34641523 -85103375 - MIR SINE MIR -50 212 21 870 126 68 5 chr13 34641579 34641769 -85103129 - AluSq SINE Alu -22 291 90 369 362 73 6 chr13 34642480 34642657 -85102241 - MIR3 SINE MIR -15 193 5 820 290 122 52 chr13 34643596 34644120 -85100778 + MLT1K LTR MaLR 25 585 -3 180 0 0 0 chr13 34644218 34644238 -85100660 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 517 92 0 0 chr13 34644247 34644312 -85100586 - AluSq SINE Alu -34 279 215 1295 87 46 0 chr13 34644313 34644486 -85100412 - AluSq SINE Alu -132 181 1 2575 70 3 0 chr13 34645182 34645494 -85099404 + AluSp SINE Alu 1 313 0 423 295 70 0 chr13 34646290 34646419 -85098479 - MIR SINE MIR -75 187 50 564 167 0 9 chr13 34647513 34647621 -85097277 + MER50 LTR ERV1 499 605 -129 1982 107 4 18 chr13 34649045 34649317 -85095581 + AluSx SINE Alu 1 268 -44 1791 149 10 34 chr13 34650950 34651246 -85093652 + AluJo SINE Alu 1 289 -23 217 226 95 36 chr13 34651445 34651529 -85093369 + L2 LINE L2 3175 3263 -9 350 308 142 24 chr13 34653323 34653492 -85091406 + MIR SINE MIR 3 191 -71 721 331 23 43 chr13 34657987 34658186 -85086712 - L3 LINE CR1 -4 1573 1382 1596 59 0 20 chr13 34658186 34658388 -85086510 + AluY SINE Alu 114 311 0 721 331 23 43 chr13 34658388 34658535 -85086363 - L3 LINE CR1 -195 1382 1234 683 162 8 17 chr13 34658535 34658652 -85086246 + FLAM_A SINE Alu 19 134 -8 349 349 176 6 chr13 34658654 34658984 -85085914 - L3 LINE CR1 -483 1094 709 197 284 30 15 chr13 34660851 34660918 -85083980 - L3 LINE CR1 -124 1453 1386 2106 132 0 0 chr13 34661165 34661452 -85083446 + AluSx SINE Alu 3 289 -23 31 58 0 0 chr13 34661566 34661618 -85083280 + AT_rich Low_complexity Low_complexity 1 52 0 333 68 0 0 chr13 34663813 34663857 -85081041 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr13 34666205 34666235 -85078663 + AT_rich Low_complexity Low_complexity 1 30 0 387 60 0 0 chr13 34668170 34668220 -85076678 + (TG)n Simple_repeat Simple_repeat 2 51 0 184 184 0 26 chr13 34668637 34668675 -85076223 + L2 LINE L2 3221 3257 -15 217 359 0 0 chr13 34669482 34669560 -85075338 - MIR SINE MIR -82 126 49 565 278 84 16 chr13 34673006 34673197 -85071701 - MIR SINE MIR -58 204 1 4296 125 7 0 chr13 34673269 34673867 -85071031 + LTR43 LTR ERV1 1 602 0 347 304 35 94 chr13 34674100 34674527 -85070371 - L2 LINE L2 -452 2862 2461 248 353 76 8 chr13 34674599 34674718 -85070180 - MIR SINE MIR -116 146 20 568 91 13 0 chr13 34674843 34674920 -85069978 - MADE1 DNA Mariner -2 78 1 21 0 0 0 chr13 34676772 34676793 -85068105 + AT_rich Low_complexity Low_complexity 1 21 0 2909 0 0 0 chr13 34677408 34677715 -85067183 + AluYa5 SINE Alu 1 307 -4 1746 187 13 10 chr13 34677766 34678076 -85066822 - AluJo SINE Alu -1 311 1 430 94 0 0 chr13 34678327 34678380 -85066518 + Alu SINE Alu 240 292 -20 242 231 125 58 chr13 34678732 34678836 -85066062 + L2 LINE L2 3161 3271 -1 277 318 33 26 chr13 34679177 34679328 -85065570 + MIR SINE MIR 32 183 -79 1159 145 224 59 chr13 34679578 34679833 -85065065 - AluSg SINE Alu -3 297 1 926 69 15 0 chr13 34680973 34681103 -85063795 + (GAAA)n Simple_repeat Simple_repeat 3 134 0 2561 50 3 0 chr13 34681147 34681445 -85063453 - AluY SINE Alu -12 299 1 2135 133 0 3 chr13 34681905 34682213 -85062685 - AluSx SINE Alu -3 309 3 792 217 30 6 chr13 34682773 34682939 -85061959 - MER5A DNA MER1_type -3 186 17 335 250 149 42 chr13 34682952 34683120 -85061778 + MER5A DNA MER1_type 4 189 0 291 226 16 0 chr13 34685488 34685550 -85059348 - MIR3 SINE MIR -50 158 96 236 298 8 66 chr13 34687638 34687759 -85057139 - L3 LINE CR1 -40 1537 1424 1995 67 85 4 chr13 34688158 34688428 -85056470 + L1MA3 LINE L1 6010 6301 -4 2082 127 10 0 chr13 34688430 34688721 -85056177 - AluSx SINE Alu -18 294 1 22 0 0 0 chr13 34688721 34688743 -85056155 + AT_rich Low_complexity Low_complexity 1 22 0 258 276 60 60 chr13 34689126 34689260 -85055638 - MLT1J LTR MaLR -48 463 330 514 196 29 65 chr13 34689473 34689611 -85055287 - MER20 DNA MER1_type -86 133 1 241 313 33 58 chr13 34690259 34690499 -85054399 - Tigger2 DNA MER2_type -1468 1250 1017 2876 168 27 35 chr13 34690653 34691217 -85053681 + MER89 LTR ERV1 1 559 0 1230 250 128 25 chr13 34691646 34692038 -85052860 - MLT1D LTR MaLR -17 488 57 222 333 103 0 chr13 34692134 34692212 -85052686 + L2 LINE L2 2720 2805 -509 186 328 30 60 chr13 34692261 34692395 -85052503 + L2 LINE L2 2896 3025 -247 * 586 286 124 32 chr13 34692393 34692708 -85052190 - L2 LINE L2 0 3313 2970 398 296 162 42 chr13 34692710 34692818 -85052080 - L2 LINE L2 -482 2832 2738 2736 130 30 28 chr13 34692818 34693249 -85051649 + MSTB1 LTR MaLR 1 432 0 398 296 162 42 chr13 34693249 34693448 -85051450 - L2 LINE L2 -576 2738 2488 261 288 36 27 chr13 34693614 34693725 -85051173 + MER5B DNA MER1_type 43 154 -24 186 43 0 0 chr13 34694981 34695004 -85049894 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2463 83 0 0 chr13 34695644 34695946 -85048952 - AluY SINE Alu -8 303 2 793 195 39 0 chr13 34697405 34697533 -85047365 + FLAM_A SINE Alu 1 133 0 25 0 0 0 chr13 34698655 34698680 -85046218 + AT_rich Low_complexity Low_complexity 1 25 0 303 155 48 36 chr13 34698955 34699039 -85045859 - HAL1b LINE L1 0 1348 1264 22 0 0 0 chr13 34699767 34699789 -85045109 + AT_rich Low_complexity Low_complexity 1 22 0 729 267 146 39 chr13 34699996 34700531 -85044367 - L1MC4a LINE L1 -1926 5882 5291 25 0 0 0 chr13 34700882 34700907 -85043991 + AT_rich Low_complexity Low_complexity 1 25 0 1193 118 0 6 chr13 34701118 34701287 -85043611 + L1MB8 LINE L1 6011 6178 0 247 167 0 0 chr13 34703048 34703090 -85041808 - MIR SINE MIR -3 259 218 199 184 26 0 chr13 34703057 34703095 -85041803 - L2 LINE L2 -18 3254 3216 * 1175 142 12 0 chr13 34703097 34703266 -85041632 + Tigger4(Zombi) DNA MER2_type 3 173 -2558 3568 112 29 11 chr13 34703268 34703763 -85041135 + Tigger4(Zombi) DNA MER2_type 2170 2677 -54 182 62 31 0 chr13 34703763 34703795 -85041103 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 3568 112 29 11 chr13 34703795 34703851 -85041047 + Tigger4(Zombi) DNA MER2_type 2677 2731 0 336 269 59 34 chr13 34703909 34704028 -85040870 - MIR SINE MIR -117 145 24 1479 179 32 65 chr13 34704583 34704891 -85040007 - AluJo SINE Alu -14 298 1 2217 119 3 0 chr13 34705891 34706194 -85038704 + AluSq SINE Alu 1 304 -9 203 277 78 92 chr13 34706767 34707038 -85037860 - L2 LINE L2 -494 2820 2554 2080 132 3 0 chr13 34708371 34708667 -85036231 - AluJb SINE Alu -7 305 9 279 0 0 0 chr13 34708973 34709004 -85035894 + (TG)n Simple_repeat Simple_repeat 1 31 0 213 39 0 0 chr13 34709003 34709029 -85035869 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 2201 116 0 13 chr13 34709877 34710179 -85034719 - AluSx SINE Alu -14 298 1 1101 132 68 29 chr13 34710253 34710458 -85034440 - MER20 DNA MER1_type 0 219 7 2248 118 0 16 chr13 34710839 34711152 -85033746 + AluSx SINE Alu 1 308 -4 329 382 0 0 chr13 34711782 34711913 -85032985 - MIR SINE MIR -117 145 15 344 250 144 30 chr13 34711928 34712060 -85032838 - MER117 DNA MER1_type -9 188 42 52 0 0 0 chr13 34712581 34712633 -85032265 + AT_rich Low_complexity Low_complexity 1 52 0 1867 111 89 0 chr13 34713856 34714126 -85030772 - AluSx SINE Alu -18 294 1 570 239 81 47 chr13 34714503 34714737 -85030161 + L2 LINE L2 3051 3292 -21 360 310 94 61 chr13 34714891 34715285 -85029613 + MLT1K LTR MaLR 128 534 -54 1094 129 0 12 chr13 34715298 34715461 -85029437 + AluSx SINE Alu 1 161 -151 22 0 0 0 chr13 34715948 34715970 -85028928 + AT_rich Low_complexity Low_complexity 1 22 0 2247 176 23 45 chr13 34716472 34716785 -85028113 + MER65C LTR ERV1 1 302 -159 1671 208 0 0 chr13 34716785 34717097 -85027801 - AluJb SINE Alu 0 312 1 2247 176 23 45 chr13 34717097 34717254 -85027644 + MER65C LTR ERV1 302 461 0 27 62 0 0 chr13 34717544 34717592 -85027306 + AT_rich Low_complexity Low_complexity 1 48 0 407 171 0 0 chr13 34718124 34718194 -85026704 + MER65C LTR ERV1 249 318 -143 226 204 0 0 chr13 34718193 34718237 -85026661 - AluSq SINE Alu -3 299 256 * 2091 125 0 0 chr13 34718290 34718570 -85026328 - AluSq SINE Alu -33 280 1 523 268 146 5 chr13 34719004 34719217 -85025681 + MIR SINE MIR 18 260 -2 414 57 0 0 chr13 34719222 34719275 -85025623 + (TG)n Simple_repeat Simple_repeat 2 54 0 2186 94 7 36 chr13 34720636 34720945 -85023953 + AluY SINE Alu 1 300 -11 299 284 159 5 chr13 34721522 34721730 -85023168 + MIR SINE MIR 10 249 -13 2475 186 243 70 chr13 34721846 34722716 -85022182 + LTR28 LTR ERV1 1 1020 0 2028 135 0 7 chr13 34723670 34723967 -85020931 + AluJb SINE Alu 1 295 -17 489 34 0 0 chr13 34723967 34724026 -85020872 + (TA)n Simple_repeat Simple_repeat 2 60 0 1891 170 3 0 chr13 34724069 34724369 -85020529 + AluJb SINE Alu 1 301 -11 206 368 53 0 chr13 34724445 34724521 -85020377 + L2 LINE L2 3168 3247 -25 1754 154 16 20 chr13 34725053 34725359 -85019539 + AluJo SINE Alu 1 305 -7 280 322 0 11 chr13 34726190 34726280 -85018618 + CT-rich Low_complexity Low_complexity 2 90 0 210 191 24 0 chr13 34726321 34726363 -85018535 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1295 206 45 76 chr13 34726499 34726961 -85017937 + MER39 LTR ERV1 260 707 0 268 169 169 56 chr13 34728231 34728302 -85016596 - L2 LINE L2 -2 3311 3233 1945 110 37 33 chr13 34728527 34728826 -85016072 - AluSx SINE Alu -12 300 1 888 141 0 16 chr13 34729313 34729441 -85015457 + FLAM_C SINE Alu 1 126 -7 429 257 7 59 chr13 34729472 34729608 -85015290 + MIR SINE MIR 104 232 -30 606 293 114 74 chr13 34730520 34731342 -85013556 + L2 LINE L2 2467 3312 -1 199 256 73 49 chr13 34732444 34732526 -85012372 - MIR SINE MIR -107 101 18 2208 118 7 7 chr13 34734002 34734307 -85010591 + AluSx SINE Alu 1 305 -7 1078 246 9 9 chr13 34734434 34734654 -85010244 + MER58A DNA MER1_type 1 220 -4 183 80 0 0 chr13 34735349 34735374 -85009524 + (TTTTTA)n Simple_repeat Simple_repeat 3 27 0 2094 108 45 0 chr13 34735693 34735980 -85008918 - AluSx SINE Alu -12 300 1 556 279 50 6 chr13 34736342 34736521 -85008377 - MIR SINE MIR -56 206 20 543 291 10 66 chr13 34736582 34736778 -85008120 + MIR3 SINE MIR 20 204 -4 1332 267 86 80 chr13 34737212 34737912 -85006986 + MER21B LTR ERV1 6 709 -154 1072 261 54 45 chr13 34737912 34738357 -85006541 + L2 LINE L2 2857 3305 -8 2120 85 0 0 chr13 34738560 34738819 -85006079 - AluY SINE Alu -20 291 33 186 43 0 0 chr13 34739477 34739500 -85005398 + (T)n Simple_repeat Simple_repeat 1 23 0 1123 162 6 0 chr13 34740073 34740252 -85004646 + AluSg/x SINE Alu 133 312 0 2093 192 8 0 chr13 34740275 34740640 -85004258 + MER93b LTR ERV1 5 372 -1 241 186 0 51 chr13 34740826 34740885 -85004013 - Charlie3 DNA MER1_type -637 2073 2018 754 279 131 46 chr13 34740894 34741352 -85003546 + L3 LINE CR1 740 1236 -341 181 323 0 15 chr13 34741417 34741482 -85003416 - L2 LINE L2 -8 3264 3201 1910 183 79 100 chr13 34741598 34742053 -85002845 + MLT2B1 LTR ERVL 1 464 -56 2101 128 19 53 chr13 34742053 34742429 -85002469 - THE1B LTR MaLR 0 364 2 10937 104 33 56 chr13 34742430 34744046 -85000852 - THE1B-int LTR MaLR 0 1580 1 2259 109 27 56 chr13 34744046 34744421 -85000477 - THE1B LTR MaLR 0 364 1 1910 183 79 100 chr13 34744421 34744493 -85000405 + MLT2B1 LTR ERVL 462 520 0 245 346 34 63 chr13 34744719 34744924 -84999974 - L2 LINE L2 -223 3049 2851 417 374 15 8 chr13 34745162 34745424 -84999474 - L2 LINE L2 -810 2504 2241 374 236 94 16 chr13 34745472 34745599 -84999299 + MIR SINE MIR 37 173 -89 231 346 83 20 chr13 34745662 34745916 -84998982 - L2 LINE L2 -1106 2208 1939 2451 77 0 13 chr13 34746671 34746981 -84997917 - AluY SINE Alu -5 306 1 21 0 0 0 chr13 34747541 34747562 -84997336 + AT_rich Low_complexity Low_complexity 1 21 0 326 330 70 48 chr13 34747967 34748056 -84996842 + L3 LINE CR1 1301 1387 -190 2311 96 0 0 chr13 34748056 34748348 -84996550 + AluY SINE Alu 1 292 -19 326 330 70 48 chr13 34748348 34748528 -84996370 + L3 LINE CR1 1387 1576 -1 1855 136 49 0 chr13 34749117 34749404 -84995494 - AluJb SINE Alu -11 301 1 1618 100 0 0 chr13 34749733 34749943 -84994955 + AluSg/x SINE Alu 85 294 -16 345 96 0 0 chr13 34749966 34750018 -84994880 + Alu SINE Alu 247 298 -2 215 226 0 48 chr13 34750071 34750133 -84994765 + L2 LINE L2 3254 3312 -1 526 111 0 12 chr13 34750871 34750952 -84993946 + MADE1 DNA Mariner 1 80 0 282 237 0 0 chr13 34751259 34751335 -84993563 + (CA)n Simple_repeat Simple_repeat 2 77 0 2295 79 0 54 chr13 34751876 34752191 -84992707 - AluY SINE Alu -13 298 1 487 256 63 59 chr13 34752294 34752532 -84992366 - L3 LINE CR1 -956 621 383 2030 184 63 20 chr13 34752704 34753150 -84991748 + MLT1C LTR MaLR 3 467 0 2259 87 7 0 chr13 34754594 34754908 -84989990 - AluSp SINE Alu 0 313 1 1663 180 36 4 chr13 34755730 34756008 -84988890 - AluJb SINE Alu -21 291 5 27 0 0 0 chr13 34757663 34757690 -84987208 + AT_rich Low_complexity Low_complexity 1 27 0 332 258 21 0 chr13 34758941 34759034 -84985864 + MER103 DNA DNA 72 166 0 712 65 9 9 chr13 34760941 34761049 -84983849 + (TGGA)n Simple_repeat Simple_repeat 1 108 0 263 286 14 0 chr13 34761276 34761346 -84983552 - L2 LINE L2 -3 3310 3240 266 311 10 10 chr13 34762618 34762721 -84982177 + MIR SINE MIR 35 137 -71 191 100 0 0 chr13 34762908 34762938 -84981960 - MIR SINE MIR -108 154 125 28 29 0 0 chr13 34764442 34764477 -84980421 + AT_rich Low_complexity Low_complexity 1 35 0 1604 179 78 29 chr13 34764953 34765299 -84979599 - MLT1A1 LTR MaLR -2 363 1 568 301 28 0 chr13 34765341 34765517 -84979381 + MIR SINE MIR 60 240 -22 364 145 16 0 chr13 34766883 34766945 -84977953 - Charlie8 DNA MER1_type -14 2403 2341 458 293 142 29 chr13 34767000 34767246 -84977652 - Charlie8 DNA MER1_type -2141 276 3 375 127 0 0 chr13 34767436 34767499 -84977399 + (TG)n Simple_repeat Simple_repeat 1 63 0 1425 159 126 4 chr13 34768067 34768338 -84976560 - AluJo SINE Alu -8 304 1 260 343 122 6 chr13 34768638 34768819 -84976079 + MIR SINE MIR 1 202 -60 2625 182 22 0 chr13 34769728 34770185 -84974713 + MLT1C LTR MaLR 1 467 0 276 322 114 20 chr13 34770662 34770811 -84974087 + MIR3 SINE MIR 37 199 -9 1876 156 64 22 chr13 34771180 34771540 -84973358 + THE1C LTR MaLR 1 375 0 1724 168 48 30 chr13 34772278 34772611 -84972287 + MER58B DNA MER1_type 3 341 0 1967 186 15 33 chr13 34773577 34774057 -84970841 + L1MB3 LINE L1 5353 5832 -339 10903 63 18 10 chr13 34774057 34775432 -84969466 + SVA Other Other 1 1386 0 1152 126 15 45 chr13 34775441 34775640 -84969258 + AluSg/x SINE Alu 120 312 0 1847 157 7 0 chr13 34775645 34775945 -84968953 + L1MB3 LINE L1 5823 6124 -59 1578 193 121 24 chr13 34776773 34777193 -84967705 + MLT1C LTR MaLR 1 461 -6 1885 156 82 2 chr13 34777325 34777662 -84967236 + MLT1A1 LTR MaLR 1 396 0 1335 208 12 103 chr13 34777988 34778387 -84966511 + MLT1A1 LTR MaLR 3 365 0 2312 114 0 0 chr13 34779062 34779361 -84965537 + AluSq SINE Alu 1 299 -14 465 173 0 0 chr13 34779867 34779942 -84964956 - FRAM SINE Alu -59 117 43 182 209 23 0 chr13 34781155 34781198 -84963700 + L2 LINE L2 3204 3247 -25 204 40 0 0 chr13 34781201 34781226 -84963672 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 1988 203 0 18 chr13 34781759 34782009 -84962889 + MLT1B LTR MaLR 8 250 -140 2079 134 156 5 chr13 34782009 34782381 -84962517 + MSTA LTR MaLR 1 428 0 1988 203 0 18 chr13 34782381 34782520 -84962378 + MLT1B LTR MaLR 250 390 0 235 311 59 0 chr13 34782520 34782655 -84962243 - MIR SINE MIR -36 226 84 2760 16 0 13 chr13 34784107 34784415 -84960483 - AluYa5 SINE Alu -7 304 1 2340 101 10 0 chr13 34785780 34786087 -84958811 - AluSx SINE Alu -2 310 1 379 227 136 39 chr13 34786505 34786659 -84958239 - MIR SINE MIR 0 262 94 915 202 61 45 chr13 34787571 34787755 -84957143 - L1MB3 LINE L1 -1 6182 5992 1782 152 21 0 chr13 34787755 34788044 -84956854 + AluJb SINE Alu 1 295 -17 915 202 61 45 chr13 34788044 34788106 -84956792 - L1MB3 LINE L1 -191 5992 5932 1103 132 5 21 chr13 34788174 34788388 -84956510 - MER1B DNA MER1_type -4 335 56 831 165 0 0 chr13 34788412 34788539 -84956359 - FLAM_C SINE Alu -6 127 1 691 218 21 21 chr13 34788544 34788732 -84956166 + L1M4 LINE L1 2245 2432 -3714 3161 122 8 23 chr13 34788767 34788905 -84955993 - L1MB3 LINE L1 -241 5942 5803 1751 141 45 6 chr13 34788905 34789217 -84955681 - L1MC1 LINE L1 -7 6326 6003 3161 122 8 23 chr13 34789217 34789593 -84955305 - L1MB3 LINE L1 -380 5803 5436 960 172 11 17 chr13 34789815 34789989 -84954909 + FRAM SINE Alu 1 173 -3 294 143 0 0 chr13 34789991 34790040 -84954858 + (GA)n Simple_repeat Simple_repeat 1 49 0 2020 145 7 7 chr13 34790318 34790621 -84954277 - AluSx SINE Alu -9 303 1 180 0 0 0 chr13 34790678 34790698 -84954200 + (TTA)n Simple_repeat Simple_repeat 2 21 0 809 185 0 0 chr13 34790701 34790836 -84954062 - FRAM SINE Alu -30 146 12 1715 88 8 0 chr13 34791077 34791315 -84953583 + L1MA1 LINE L1 6059 6298 -4 243 0 0 0 chr13 34792455 34792482 -84952416 + (CA)n Simple_repeat Simple_repeat 1 27 0 2432 98 3 0 chr13 34793579 34793886 -84951012 + AluSg SINE Alu 1 308 -2 1507 110 5 14 chr13 34794697 34794906 -84949992 + AluSx SINE Alu 1 207 -105 761 107 16 8 chr13 34795063 34795184 -84949714 + L1MA2 LINE L1 6183 6304 0 2294 96 0 0 chr13 34796820 34797111 -84947787 - AluSq SINE Alu -4 309 19 1264 177 12 49 chr13 34797165 34797408 -84947490 - AluJo SINE Alu -77 235 2 24 0 0 0 chr13 34797457 34797481 -84947417 + AT_rich Low_complexity Low_complexity 1 24 0 284 308 10 0 chr13 34798569 34798673 -84946225 + LTR48B LTR ERV1 1 105 -539 1122 196 47 73 chr13 34798676 34798937 -84945961 + MER39 LTR ERV1 330 440 -125 1734 173 10 10 chr13 34798937 34799226 -84945672 + AluJb SINE Alu 1 289 -23 1122 196 47 73 chr13 34799226 34799345 -84945553 + MER39 LTR ERV1 440 561 -4 21 0 0 0 chr13 34799546 34799567 -84945331 + AT_rich Low_complexity Low_complexity 1 21 0 315 274 65 24 chr13 34800227 34800351 -84944547 - MER94 DNA DNA -5 129 1 335 222 35 111 chr13 34801081 34801225 -84943673 + MIR SINE MIR 59 191 -71 1913 126 47 20 chr13 34803485 34803786 -84941112 - AluSq SINE Alu -4 309 1 1699 190 57 35 chr13 34803917 34804322 -84940576 + MLT2D LTR ERVL 1 414 0 22 35 0 0 chr13 34805829 34805858 -84939040 + AT_rich Low_complexity Low_complexity 1 29 0 225 214 0 60 chr13 34806255 34806339 -84938559 + L1MC5 LINE L1 7671 7749 -212 2194 124 0 0 chr13 34806530 34806828 -84938070 + AluSx SINE Alu 1 298 -14 34 55 0 0 chr13 34808065 34808120 -84936778 + AT_rich Low_complexity Low_complexity 1 55 0 213 289 0 0 chr13 34808365 34808417 -84936481 + L2 LINE L2 3262 3313 0 2225 118 3 0 chr13 34808508 34808805 -84936093 - AluSp SINE Alu -15 298 1 447 219 110 49 chr13 34808938 34809101 -84935797 + MIR3 SINE MIR 36 208 0 183 129 0 0 chr13 34810854 34810885 -84934013 + (TG)n Simple_repeat Simple_repeat 1 31 0 304 256 128 42 chr13 34810925 34811285 -84933613 + L1ME4a LINE L1 5508 5898 -223 589 197 51 8 chr13 34811887 34812004 -84932894 + L2 LINE L2 3191 3312 -1 1847 122 65 7 chr13 34812127 34812435 -84932463 - AluJb SINE Alu 0 312 1 3520 69 0 0 chr13 34813284 34813746 -84931152 + L1PA8 LINE L1 5704 6165 -7 221 300 116 28 chr13 34814281 34814422 -84930476 + MIR SINE MIR 5 158 -65 24 0 0 0 chr13 34815692 34815716 -84929182 + AT_rich Low_complexity Low_complexity 1 24 0 261 0 0 0 chr13 34815758 34815787 -84929111 + (TTA)n Simple_repeat Simple_repeat 2 30 0 40662 32 24 2 chr13 34815787 34821795 -84923103 - L1PA2 LINE L1 -7 6148 1 432 55 0 0 chr13 34822536 34822591 -84922307 + (TC)n Simple_repeat Simple_repeat 2 56 0 22 0 0 0 chr13 34823031 34823053 -84921845 + AT_rich Low_complexity Low_complexity 1 22 0 213 250 18 0 chr13 34823075 34823131 -84921767 + MIR3 SINE MIR 150 206 -2 1135 158 99 11 chr13 34824239 34824523 -84920375 - MER33 DNA MER1_type -10 314 6 25 0 0 0 chr13 34826245 34826270 -84918628 + AT_rich Low_complexity Low_complexity 1 25 0 2013 183 58 22 chr13 34827406 34827821 -84917077 + MSTB1 LTR MaLR 1 430 -2 751 199 54 11 chr13 34827918 34828104 -84916794 + L1MB7 LINE L1 46 239 -6303 461 170 0 40 chr13 34828096 34828196 -84916702 + L1MB7 LINE L1 1419 1514 -5028 * 4896 252 38 33 chr13 34828219 34830653 -84914245 + L1MB7 LINE L1 1936 4334 -2310 392 48 0 65 chr13 34830654 34830716 -84914182 - MLT2C2 LTR ERVL 0 464 407 658 265 76 69 chr13 34830751 34831144 -84913754 - MLT2B1 LTR ERVL -39 481 86 4162 202 16 40 chr13 34831153 34831448 -84913450 + L1MB7 LINE L1 4315 4616 -2028 2270 88 26 0 chr13 34831448 34831753 -84913145 - AluSq SINE Alu 0 313 1 4162 202 16 40 chr13 34831753 34832514 -84912384 + L1MB7 LINE L1 4616 5342 -1302 2436 109 0 0 chr13 34832514 34832827 -84912071 - AluSp SINE Alu 0 313 1 4162 202 16 40 chr13 34832827 34832934 -84911964 + L1MB7 LINE L1 5342 5450 -1194 1231 202 3 31 chr13 34832933 34833250 -84911648 + L1MB7 LINE L1 6138 6445 -237 * 24 0 0 0 chr13 34833370 34833394 -84911504 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr13 34834523 34834573 -84910325 + AT_rich Low_complexity Low_complexity 1 50 0 2007 135 49 18 chr13 34834677 34835004 -84909894 - MER1B DNA MER1_type 0 337 1 1720 156 14 3 chr13 34835279 34835589 -84909309 - AluJb SINE Alu 0 312 1 292 298 158 93 chr13 34835996 34836139 -84908759 + L2 LINE L2 2823 2955 -317 3937 127 46 0 chr13 34836139 34836746 -84908152 + MER41B LTR ERV1 1 635 0 292 298 158 93 chr13 34836746 34837021 -84907877 + L2 LINE L2 2955 3268 -4 410 256 113 34 chr13 34837402 34837593 -84907305 - MIR SINE MIR -18 244 45 2213 105 0 33 chr13 34837860 34838166 -84906732 - AluSq SINE Alu -17 296 1 556 246 116 5 chr13 34838672 34838871 -84906027 - MARNA DNA Mariner -180 406 186 239 286 14 0 chr13 34838988 34839058 -84905840 + (TA)n Simple_repeat Simple_repeat 1 71 0 2406 89 0 6 chr13 34839689 34840003 -84904895 - AluSx SINE Alu 0 312 1 265 339 158 9 chr13 34840984 34841205 -84903693 + MIR SINE MIR 2 255 -7 2129 96 4 0 chr13 34841206 34841477 -84903421 + AluSp SINE Alu 4 275 -38 21 71 0 0 chr13 34841848 34841890 -84903008 + AT_rich Low_complexity Low_complexity 1 42 0 403 211 100 0 chr13 34842244 34842334 -84902564 + MER63 DNA MER1_type 27 751 -85 270 281 12 0 chr13 34842732 34842814 -84902084 + CT-rich Low_complexity Low_complexity 2 84 0 967 147 6 6 chr13 34843105 34843262 -84901636 - FRAM SINE Alu -20 156 1 2348 155 41 56 chr13 34843529 34844014 -84900884 + MER66A LTR ERV1 1 478 0 3462 134 11 62 chr13 34844390 34845037 -84899861 + L1MA4 LINE L1 5593 6204 -96 2240 103 0 0 chr13 34845037 34845343 -84899555 - AluSx SINE Alu 0 306 1 3462 134 11 62 chr13 34845343 34845414 -84899484 + L1MA4 LINE L1 6204 6277 -23 273 315 18 36 chr13 34845640 34845751 -84899147 - MIR3 SINE MIR -3 205 97 442 282 53 73 chr13 34846274 34846480 -84898418 - MIR SINE MIR -48 214 13 218 171 0 0 chr13 34847186 34847221 -84897677 + (CA)n Simple_repeat Simple_repeat 1 35 0 731 130 9 0 chr13 34847490 34847598 -84897300 - FRAM SINE Alu -14 162 54 448 174 0 0 chr13 34847600 34847686 -84897212 + L1 LINE L1 4999 5084 -1062 * 6749 156 47 31 chr13 34847670 34849109 -84895789 - L1MC3 LINE L1 -129 7656 6194 1005 276 123 45 chr13 34850748 34851478 -84893420 + HAL1 LINE L1 962 1803 -704 1985 181 73 5 chr13 34851478 34851877 -84893021 + MSTB LTR MaLR 1 426 0 1005 276 123 45 chr13 34851877 34852215 -84892683 + HAL1 LINE L1 1803 2113 -394 356 264 77 29 chr13 34852323 34852531 -84892367 + HAL1 LINE L1 2290 2507 0 321 267 57 19 chr13 34852640 34852745 -84892153 - L1MC4 LINE L1 -10 8032 7924 357 196 10 82 chr13 34852793 34852890 -84892008 + L1MC4 LINE L1 6614 6703 -1339 198 0 0 0 chr13 34852890 34852912 -84891986 + (TA)n Simple_repeat Simple_repeat 2 23 0 1995 147 0 3 chr13 34853104 34853403 -84891495 + AluSx SINE Alu 1 298 -14 181 222 79 16 chr13 34853405 34853468 -84891430 + L2 LINE L2 3205 3271 -1 4702 117 19 21 chr13 34854496 34855342 -84889556 + L1MA8 LINE L1 5273 6116 -175 996 110 7 19 chr13 34855344 34855499 -84889399 + FRAM SINE Alu 1 153 -23 1004 140 21 16 chr13 34855507 34855700 -84889198 + L1MA8 LINE L1 6098 6291 0 274 304 98 20 chr13 34856186 34856288 -84888610 + MIR3 SINE MIR 6 115 -93 464 252 28 75 chr13 34857423 34857637 -84887261 + MER63A DNA MER1_type 1 204 -6 220 375 111 14 chr13 34860031 34860175 -84884723 - L2 LINE L2 0 3272 3115 297 327 77 39 chr13 34860402 34860610 -84884288 - L3 LINE CR1 -51 1526 1311 339 320 105 0 chr13 34860715 34860868 -84884030 - L2 LINE L2 -8 3264 3096 529 267 38 129 chr13 34860987 34861358 -84883540 - L2 LINE L2 -10 3303 2967 1489 270 105 0 chr13 34861532 34861991 -84882907 + LTR40a LTR ERVL 3 509 -10 533 220 113 28 chr13 34862077 34862254 -84882644 - L2 LINE L2 -128 3185 2994 24 67 0 0 chr13 34863381 34863426 -84881472 + AT_rich Low_complexity Low_complexity 1 45 0 442 0 0 0 chr13 34863431 34863484 -84881414 - L1PA2 LINE L1 -679 5476 5424 6097 6 0 3 chr13 34863484 34864166 -84880732 + L1PA2 LINE L1 5473 6155 0 213 246 15 15 chr13 34864221 34864286 -84880612 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 1174 72 13 0 chr13 34864290 34864442 -84880456 + AluY SINE Alu 142 295 -16 225 154 0 0 chr13 34864442 34864481 -84880417 + (TA)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr13 34864629 34864650 -84880248 + AT_rich Low_complexity Low_complexity 1 21 0 243 61 0 0 chr13 34864677 34864710 -84880188 + (ATG)n Simple_repeat Simple_repeat 3 35 0 2358 99 3 0 chr13 34867403 34867705 -84877193 - AluSq SINE Alu -10 303 1 226 278 56 0 chr13 34869872 34869944 -84874954 + L2 LINE L2 3187 3262 -51 186 285 271 0 chr13 34870038 34870182 -84874716 + MIR SINE MIR 51 233 -29 183 242 0 0 chr13 34870445 34870478 -84874420 - L3 LINE CR1 -871 706 674 290 314 0 0 chr13 34871340 34871426 -84873472 + L2 LINE L2 3228 3313 0 2273 98 0 7 chr13 34871917 34872214 -84872684 + AluSc SINE Alu 5 299 -10 755 222 113 5 chr13 34872689 34872883 -84872015 + MIR SINE MIR 48 262 0 245 277 78 42 chr13 34873634 34873800 -84871098 - MIR SINE MIR -44 218 47 7790 19 0 0 chr13 34874106 34875103 -84869795 + L1PA3 LINE L1 5157 6152 -3 198 0 0 0 chr13 34875106 34875128 -84869770 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 207 284 75 0 chr13 34876595 34876662 -84868236 - MIR SINE MIR -73 189 118 2332 81 0 28 chr13 34878157 34878479 -84866419 - AluSq SINE Alu 0 313 1 21 0 0 0 chr13 34878846 34878867 -84866031 + AT_rich Low_complexity Low_complexity 1 21 0 377 299 170 10 chr13 34878871 34879065 -84865833 - MIR SINE MIR -32 230 6 608 324 40 14 chr13 34879130 34879352 -84865546 - MIR SINE MIR -33 229 2 1647 279 113 10 chr13 34879565 34880175 -84864723 + L2 LINE L2 1709 2381 -933 217 265 44 15 chr13 34880163 34880231 -84864667 + L2 LINE L2 3244 3313 0 * 992 208 50 0 chr13 34880603 34880843 -84864055 - L1MB7 LINE L1 0 6184 5933 336 311 89 0 chr13 34880854 34880989 -84863909 - MIR SINE MIR -13 249 103 2049 43 122 4 chr13 34881755 34882033 -84862865 + AluY SINE Alu 1 311 0 205 320 40 0 chr13 34883121 34883196 -84861702 + MIR SINE MIR 72 149 -113 2020 117 0 27 chr13 34883269 34883567 -84861331 + AluSx SINE Alu 1 290 -22 375 339 0 0 chr13 34884280 34884389 -84860509 - L3 LINE CR1 -233 1344 1236 191 114 29 0 chr13 34884535 34884570 -84860328 + GA-rich Low_complexity Low_complexity 2 37 0 214 246 312 14 chr13 34884603 34884741 -84860157 - MIR SINE MIR -12 250 72 199 315 14 82 chr13 34884820 34884966 -84859932 - L3 LINE CR1 -358 1219 1084 251 371 73 8 chr13 34884981 34885105 -84859793 - L2 LINE L2 -20 3252 3121 1650 193 74 20 chr13 34885510 34885863 -84859035 + MLT1A2 LTR MaLR 3 374 0 314 317 48 36 chr13 34885863 34886030 -84858868 - L3 LINE CR1 -889 688 520 2143 115 0 7 chr13 34886883 34887178 -84857720 + AluSq SINE Alu 2 294 -19 779 264 62 7 chr13 34887402 34887690 -84857208 - MER46C DNA MER2_type -13 325 22 1048 155 26 58 chr13 34888352 34888578 -84856320 + MER20 DNA MER1_type 1 219 0 23 54 0 0 chr13 34888702 34888739 -84856159 + AT_rich Low_complexity Low_complexity 1 37 0 445 123 0 0 chr13 34889581 34889646 -84855252 + Tigger2 DNA MER2_type 3 67 -2651 * 2448 121 70 16 chr13 34889632 34890061 -84854837 + Tigger2 DNA MER2_type 2267 2718 0 233 214 0 36 chr13 34891252 34891308 -84853590 - L2 LINE L2 -9 3304 3251 26 0 0 0 chr13 34892629 34892655 -84852243 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr13 34893576 34893599 -84851299 + AT_rich Low_complexity Low_complexity 1 23 0 6213 52 11 7 chr13 34893987 34894817 -84850081 - L1PA8 LINE L1 0 6172 5340 183 80 0 0 chr13 34898381 34898406 -84846492 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 1834 88 14 0 chr13 34898504 34898787 -84846111 - L1PA8 LINE L1 -772 5374 5088 1011 37 7 22 chr13 34898787 34898915 -84845983 + L1PA8 LINE L1 6040 6172 0 25 31 0 0 chr13 34899561 34899593 -84845305 + AT_rich Low_complexity Low_complexity 1 32 0 748 234 22 22 chr13 34899752 34899936 -84844962 + MIR SINE MIR 78 261 -1 21 36 0 0 chr13 34899938 34899966 -84844932 + AT_rich Low_complexity Low_complexity 1 28 0 2796 16 0 0 chr13 34900013 34900320 -84844578 - AluYa5 SINE Alu -4 307 1 224 282 0 42 chr13 34901051 34901122 -84843776 - L2 LINE L2 0 3272 3205 27 0 0 0 chr13 34901296 34901323 -84843575 + AT_rich Low_complexity Low_complexity 1 27 0 582 184 0 9 chr13 34901468 34901577 -84843321 - FLAM_A SINE Alu -23 119 12 1952 149 3 3 chr13 34902704 34903040 -84841858 - AluSx SINE Alu 0 336 1 22 35 0 0 chr13 34903503 34903532 -84841366 + AT_rich Low_complexity Low_complexity 1 29 0 611 261 46 0 chr13 34904727 34904922 -84839976 + L1ME1 LINE L1 5958 6161 -5 21 0 0 0 chr13 34905054 34905075 -84839823 + AT_rich Low_complexity Low_complexity 1 21 0 422 272 144 15 chr13 34905458 34905653 -84839245 + MIR SINE MIR 43 262 0 2389 71 7 0 chr13 34906506 34906801 -84838097 - AluSq SINE Alu -15 298 2 1254 185 21 110 chr13 34907595 34907930 -84836968 + AluYb8 SINE Alu 1 305 -13 284 220 33 0 chr13 34909160 34909251 -84835647 - MER5A DNA MER1_type -83 106 13 2124 117 3 22 chr13 34909261 34909577 -84835321 - AluSx SINE Alu -2 310 1 25 31 0 0 chr13 34909779 34909811 -84835087 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr13 34910601 34910624 -84834274 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2218 115 0 13 chr13 34910653 34910965 -84833933 + AluSx SINE Alu 1 308 -4 260 356 30 69 chr13 34911852 34912085 -84832813 - L2 LINE L2 -53 3219 2996 633 294 51 47 chr13 34912495 34912730 -84832168 - MIR SINE MIR -7 255 20 347 225 25 92 chr13 34912910 34913030 -84831868 - MIR SINE MIR -33 229 118 669 35 0 0 chr13 34914870 34914955 -84829943 - AluY SINE Alu -4 307 223 647 216 199 6 chr13 34916932 34917113 -84827785 + MIR SINE MIR 7 222 -40 317 318 69 29 chr13 34917136 34917309 -84827589 - MIR SINE MIR -45 217 38 2509 52 0 13 chr13 34918362 34918668 -84826230 - AluY SINE Alu -9 302 1 21 36 0 0 chr13 34919763 34919791 -84825107 + AT_rich Low_complexity Low_complexity 1 28 0 278 319 120 0 chr13 34921154 34921281 -84823617 + MIR SINE MIR 43 192 -67 948 181 0 50 chr13 34922554 34922736 -84822162 + AluJb SINE Alu 137 309 -3 207 69 0 0 chr13 34922863 34922892 -84822006 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2215 127 0 9 chr13 34923469 34923784 -84821114 - AluSx SINE Alu 0 312 1 21 0 0 0 chr13 34925544 34925565 -84819333 + AT_rich Low_complexity Low_complexity 1 21 0 342 336 81 41 chr13 34925700 34926232 -84818666 - L2 LINE L2 -592 2722 2170 1730 171 79 6 chr13 34926260 34926600 -84818298 - MLT1A1 LTR MaLR 0 365 1 2313 224 107 6 chr13 34926864 34927544 -84817354 + L1MC4a LINE L1 7056 7804 -4 1927 106 14 0 chr13 34927864 34928146 -84816752 + MER7A DNA MER2_type 63 346 0 1256 300 41 18 chr13 34928172 34928829 -84816069 + L1MC4a LINE L1 5255 5926 -1882 798 171 0 14 chr13 34928844 34928990 -84815908 + Tigger7 DNA MER2_type 27 170 -265 * 1359 118 32 112 chr13 34928989 34929302 -84815596 + Tigger7 DNA MER2_type 2300 2587 0 767 154 0 0 chr13 34929358 34929475 -84815423 + FLAM_C SINE Alu 1 117 -16 24 53 0 0 chr13 34929562 34929600 -84815298 + AT_rich Low_complexity Low_complexity 1 38 0 236 275 0 14 chr13 34930323 34930392 -84814506 + (CATA)n Simple_repeat Simple_repeat 2 69 0 867 268 60 0 chr13 34931096 34931331 -84813567 + MIR SINE MIR 14 262 0 447 300 50 39 chr13 34932731 34932911 -84811987 + MIR3 SINE MIR 19 200 -8 743 164 14 100 chr13 34933752 34934084 -84810814 - AluJo SINE Alu -2 310 28 299 331 71 32 chr13 34934364 34934518 -84810380 - MIR SINE MIR -83 179 20 254 213 16 16 chr13 34934823 34934884 -84810014 + GA-rich Low_complexity Low_complexity 3 63 0 555 317 11 28 chr13 34934972 34935152 -84809746 + MIR SINE MIR 65 241 -21 358 296 129 60 chr13 34935718 34935951 -84808947 - MIR SINE MIR -6 256 8 184 300 0 17 chr13 34935996 34936056 -84808842 + MIR SINE MIR 64 122 -86 456 250 191 69 chr13 34938445 34938849 -84806049 - L1M2 LINE L1 -5831 1018 566 207 0 0 0 chr13 34938908 34938931 -84805967 + (CGG)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr13 34938978 34938998 -84805900 + (TCC)n Simple_repeat Simple_repeat 1 20 0 650 278 47 16 chr13 34940982 34941173 -84803725 - MIR SINE MIR -12 250 54 268 263 141 0 chr13 34941921 34942020 -84802878 - L3 LINE CR1 -2 1575 1463 857 332 163 27 chr13 34942306 34943075 -84801823 - L3 LINE CR1 -126 1451 579 560 276 152 50 chr13 34943263 34943777 -84801121 - L2 LINE L2 0 3272 2708 1875 177 0 3 chr13 34944029 34944328 -84800570 - AluJb SINE Alu -14 298 1 27 81 0 0 chr13 34944377 34944439 -84800459 + AT_rich Low_complexity Low_complexity 1 62 0 28 0 0 0 chr13 34944454 34944482 -84800416 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 34944708 34944729 -84800169 + AT_rich Low_complexity Low_complexity 1 21 0 2736 220 85 7 chr13 34944947 34946039 -84798859 + L1ME1 LINE L1 4980 6162 -4 337 294 141 54 chr13 34946137 34946783 -84798115 + L1MC4a LINE L1 5263 5964 -1844 237 340 19 19 chr13 34947351 34947457 -84797441 + L1ME3A LINE L1 522 627 -5578 459 244 52 92 chr13 34947678 34948202 -84796696 + L1ME3A LINE L1 818 1320 -4885 26 30 0 0 chr13 34948214 34948247 -84796651 + AT_rich Low_complexity Low_complexity 1 33 0 2874 229 8 2 chr13 34948332 34948962 -84795936 - MER82 DNA MER2_type -9 644 11 264 336 7 7 chr13 34948979 34949125 -84795773 + L1ME3A LINE L1 1384 1529 -4688 227 304 36 24 chr13 34949245 34949498 -84795400 + L1ME3A LINE L1 2144 2399 -3997 380 272 22 37 chr13 34949557 34949693 -84795205 + L1ME3A LINE L1 2466 2599 -3616 * 381 272 52 42 chr13 34949686 34949877 -84795021 + L1ME3A LINE L1 2819 3011 -3204 2301 95 3 7 chr13 34949916 34950222 -84794676 + AluY SINE Alu 1 305 -6 235 344 11 0 chr13 34950274 34950367 -84794531 + MLT1E1 LTR MaLR 3 96 -558 * 933 212 151 84 chr13 34950355 34950760 -84794138 + MLT1E1 LTR MaLR 221 652 -2 1162 295 115 15 chr13 34950777 34951648 -84793250 + L1ME3A LINE L1 3227 4184 -2031 1197 286 79 32 chr13 34951655 34952942 -84791956 + L1ME3A LINE L1 4215 5560 -671 799 326 7 15 chr13 34952981 34953392 -84791506 + L1ME3A LINE L1 5539 5946 -293 238 385 55 0 chr13 34953518 34953609 -84791289 + L2 LINE L2 3128 3223 -49 448 346 16 5 chr13 34953622 34953807 -84791091 - LTR16C LTR ERVL -5 486 300 191 317 17 17 chr13 34954138 34954198 -84790700 - MIR SINE MIR -183 79 20 326 291 76 51 chr13 34954382 34954540 -84790358 - MIR SINE MIR -34 228 67 256 234 0 0 chr13 34956036 34956083 -84788815 + MIR SINE MIR 114 160 -102 338 289 0 0 chr13 34956109 34956185 -84788713 + L2 LINE L2 3197 3272 0 359 271 48 32 chr13 34956694 34956972 -84787926 + L1ME3A LINE L1 4757 5037 -1109 6134 131 7 6 chr13 34957135 34958608 -84786290 + L1PB1 LINE L1 4677 6149 -2 328 237 80 91 chr13 34958712 34958999 -84785899 + L1ME3A LINE L1 5309 5592 -2216 1115 231 172 9 chr13 34959008 34959345 -84785553 + MLT1H LTR MaLR 12 403 -146 2473 103 31 14 chr13 34959525 34959883 -84785015 + THE1B LTR MaLR 1 364 0 595 316 46 14 chr13 34960339 34960557 -84784341 - MIR SINE MIR -26 236 12 342 0 0 0 chr13 34960574 34960612 -84784286 + (CA)n Simple_repeat Simple_repeat 2 39 0 280 315 26 32 chr13 34960649 34960685 -84784213 - MIR SINE MIR -56 152 117 1618 186 17 10 chr13 34960685 34960981 -84783917 - AluJo SINE Alu -13 299 2 280 315 26 32 chr13 34960981 34961104 -84783794 - MIR SINE MIR -91 117 46 1520 157 7 47 chr13 34961843 34962117 -84782781 + AluJb SINE Alu 39 301 -11 1620 264 92 25 chr13 34963495 34964115 -84780783 - L2 LINE L2 -311 3002 2341 270 81 0 0 chr13 34964879 34964916 -84779982 + (A)n Simple_repeat Simple_repeat 1 37 0 533 270 56 33 chr13 34965377 34965617 -84779281 - MIR SINE MIR 0 262 5 515 206 142 0 chr13 34965734 34965875 -84779023 - L2 LINE L2 -1398 1916 1756 578 243 50 55 chr13 34966864 34967045 -84777853 + L2 LINE L2 2608 2787 -527 1054 112 13 0 chr13 34967142 34967385 -84777513 + AluSp/q SINE Alu 160 404 0 564 240 49 44 chr13 34967402 34967606 -84777292 + L1ME3A LINE L1 5935 6139 -31 873 290 9 31 chr13 34967635 34967956 -84776942 - L2 LINE L2 -1479 1835 1522 310 265 232 6 chr13 34967956 34968137 -84776761 - L2 LINE L2 -3005 309 88 315 290 30 0 chr13 34968508 34968677 -84776221 - L1M4 LINE L1 -749 5397 5224 2189 94 0 7 chr13 34968724 34969031 -84775867 - AluY SINE Alu 0 305 1 180 0 0 0 chr13 34969147 34969167 -84775731 + (T)n Simple_repeat Simple_repeat 1 20 0 310 281 157 13 chr13 34969437 34969590 -84775308 - L1MC/D LINE L1 -2191 5617 5443 458 274 101 62 chr13 34970117 34970474 -84774424 + L2 LINE L2 827 1197 -2117 385 295 80 40 chr13 34970648 34970868 -84774030 - MIR SINE MIR -27 235 1 24 0 0 0 chr13 34973003 34973027 -84771871 + AT_rich Low_complexity Low_complexity 1 24 0 356 361 41 24 chr13 34973707 34973876 -84771022 - MER5A DNA MER1_type 0 189 18 331 272 0 33 chr13 34973995 34974087 -84770811 + MER5A DNA MER1_type 63 151 -38 388 336 62 55 chr13 34974599 34974873 -84770025 + L2 LINE L2 2225 2500 -814 23 54 0 0 chr13 34976733 34976770 -84768128 + AT_rich Low_complexity Low_complexity 1 37 0 270 299 22 60 chr13 34977006 34977140 -84767758 + MIR SINE MIR 134 262 0 430 312 57 92 chr13 34977255 34977604 -84767294 + L2 LINE L2 2931 3267 -5 234 322 51 42 chr13 34978896 34979014 -84765884 + MIR3 SINE MIR 15 133 -75 205 161 0 0 chr13 34979898 34979929 -84764969 + polypyrimidine Low_complexity Low_complexity 5 35 0 266 344 86 0 chr13 34980130 34980223 -84764675 + L2 LINE L2 3110 3210 -62 744 232 209 27 chr13 34980623 34980886 -84764012 - L2 LINE L2 -4 3309 2999 295 156 65 0 chr13 34983163 34983233 -84761665 + MIR SINE MIR 50 124 -84 256 318 0 0 chr13 34983395 34983480 -84761418 + L1ME LINE L1 5573 5657 -464 340 186 167 0 chr13 34983728 34983830 -84761068 + L1ME4a LINE L1 5965 6083 -38 304 257 42 108 chr13 34983892 34983989 -84760909 - L1MC4 LINE L1 -8 8034 7957 1456 150 144 0 chr13 34983989 34984302 -84760596 - MER46B DNA MER2_type 0 236 4 304 257 42 108 chr13 34984302 34984418 -84760480 - L1MC4 LINE L1 -85 7957 7835 5191 262 64 39 chr13 34984461 34985558 -84759340 - L1ME2 LINE L1 -34 6524 5456 719 221 34 25 chr13 34985558 34985762 -84759136 - MER3 DNA MER1_type 0 209 4 5191 262 64 39 chr13 34985762 34986952 -84757946 - L1ME2 LINE L1 -1102 5456 4297 1882 163 0 14 chr13 34986952 34987247 -84757651 - AluSx SINE Alu -21 291 1 5191 262 64 39 chr13 34987247 34988001 -84756897 - L1ME2 LINE L1 -2261 4297 3563 543 106 59 0 chr13 34988001 34988086 -84756812 - L1PA10 LINE L1 -1 6167 6078 5191 262 64 39 chr13 34988086 34988870 -84756028 - L1ME2 LINE L1 -2995 3563 2597 734 276 89 39 chr13 34988885 34989449 -84755449 - L1ME2 LINE L1 -4028 2512 1926 1245 273 83 27 chr13 34989846 34990362 -84754536 + MLT1H1 LTR MaLR 7 551 -4 3698 215 140 48 chr13 34990373 34990412 -84754486 + L1MEc LINE L1 1863 1897 -4318 2531 136 41 7 chr13 34990412 34990824 -84754074 + MSTB LTR MaLR 1 426 0 3698 215 140 48 chr13 34990824 34991995 -84752903 + L1MEc LINE L1 1897 2959 -3256 2466 51 10 0 chr13 34991995 34992289 -84752609 - AluY SINE Alu -11 300 4 3698 215 140 48 chr13 34992289 34992303 -84752595 + L1MEc LINE L1 2959 2970 -3245 2947 67 0 5 chr13 34992303 34992689 -84752209 - L1PA8 LINE L1 -17 6155 5772 3698 215 140 48 chr13 34992689 34992721 -84752177 + L1MEc LINE L1 2970 2998 -3217 2259 100 0 0 chr13 34992721 34993029 -84751869 + AluSg SINE Alu 1 308 0 3698 215 140 48 chr13 34993029 34993927 -84750971 + L1MEc LINE L1 2998 4166 -2049 1809 231 83 4 chr13 34995379 34995872 -84749026 + MLT1H1 LTR MaLR 24 555 0 851 333 138 43 chr13 34995978 34997330 -84747568 + L2 LINE L2 1789 3266 -6 487 305 48 29 chr13 34999063 34999273 -84745625 - L3 LINE CR1 -98 1479 1266 183 244 67 0 chr13 34999905 34999950 -84744948 + L3b LINE CR1 1281 1328 -255 1685 135 24 3 chr13 35000159 35000455 -84744443 - L1MA9 LINE L1 0 6312 6011 23 0 0 0 chr13 35001751 35001774 -84743124 + AT_rich Low_complexity Low_complexity 1 23 0 687 292 57 20 chr13 35001797 35002146 -84742752 + L1MC5 LINE L1 7556 7917 -44 21 0 0 0 chr13 35002376 35002397 -84742501 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr13 35002472 35002514 -84742384 + AT_rich Low_complexity Low_complexity 1 42 0 485 302 48 85 chr13 35002521 35003211 -84741687 - L2 LINE L2 -17 3255 2592 303 71 0 0 chr13 35003619 35003661 -84741237 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 1894 164 3 3 chr13 35003662 35003960 -84740938 - AluJb SINE Alu -14 298 1 195 69 0 0 chr13 35006837 35006866 -84738032 + (CA)n Simple_repeat Simple_repeat 2 30 0 359 268 132 34 chr13 35007560 35007759 -84737139 + MIR SINE MIR 19 227 -35 2366 101 0 0 chr13 35008303 35008611 -84736287 + AluSg SINE Alu 1 308 -2 1622 168 25 14 chr13 35009012 35009292 -84735606 - AluJo SINE Alu -17 295 13 269 297 102 48 chr13 35011139 35011433 -84733465 - L1ME LINE L1 -557 5564 5258 2370 91 10 0 chr13 35011476 35011785 -84733113 - AluSx SINE Alu 0 312 1 1020 318 78 39 chr13 35011930 35013274 -84731624 - L1ME LINE L1 -1103 5043 3631 31 44 0 0 chr13 35013497 35013542 -84731356 + AT_rich Low_complexity Low_complexity 1 45 0 849 212 62 0 chr13 35013631 35013824 -84731074 - MER3 DNA MER1_type 0 209 5 392 281 79 60 chr13 35013837 35014318 -84730580 - L1ME LINE L1 -3139 3007 2518 25 31 0 0 chr13 35014390 35014422 -84730476 + AT_rich Low_complexity Low_complexity 1 32 0 2437 164 179 149 chr13 35014961 35015525 -84729373 - L1MD3 LINE L1 -12 7983 7256 555 219 16 0 chr13 35015525 35015648 -84729250 - MLT1F1 LTR MaLR -442 125 1 2437 164 179 149 chr13 35015648 35015974 -84728924 - L1MD3 LINE L1 -739 7256 6941 237 324 0 0 chr13 35016308 35016413 -84728485 - HAL1 LINE L1 -850 1657 1553 306 291 189 49 chr13 35016473 35016779 -84728119 - HAL1 LINE L1 -1071 1436 1088 2057 164 19 6 chr13 35016885 35017245 -84727653 - MLT1A1 LTR MaLR 0 365 1 322 238 114 0 chr13 35018016 35018121 -84726777 - L1MC4 LINE L1 -370 7672 7556 550 214 10 0 chr13 35018704 35018807 -84726091 + MER94 DNA DNA 6 109 -25 611 234 8 0 chr13 35018897 35019021 -84725877 - L2 LINE L2 -1 3312 3188 271 226 118 11 chr13 35020225 35020318 -84724580 - L1ME4a LINE L1 -46 6075 5973 316 283 91 118 chr13 35021766 35022240 -84722658 - L1M2 LINE L1 -5859 990 530 2219 89 3 3 chr13 35022625 35022918 -84721980 + AluSx SINE Alu 1 293 -19 234 0 0 0 chr13 35023851 35023877 -84721021 + (A)n Simple_repeat Simple_repeat 1 26 0 1282 184 61 11 chr13 35023888 35024149 -84720749 + AluJb SINE Alu 9 282 -30 207 0 0 0 chr13 35024153 35024176 -84720722 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1136 168 41 0 chr13 35024226 35024423 -84720475 + MER20 DNA MER1_type 14 218 -1 2139 160 20 0 chr13 35025329 35025686 -84719212 + MLT1A1 LTR MaLR 1 364 -1 1295 156 141 34 chr13 35026381 35026650 -84718248 + AluJo SINE Alu 1 298 -4 22 35 0 0 chr13 35026661 35026690 -84718208 + AT_rich Low_complexity Low_complexity 1 29 0 229 269 64 0 chr13 35026890 35026968 -84717930 + MLT1J2 LTR MaLR 342 424 -26 2692 89 3 21 chr13 35027182 35027562 -84717336 + THE1C LTR MaLR 1 373 -2 976 285 11 73 chr13 35028734 35029103 -84715795 - MLT1J2 LTR MaLR -18 432 87 279 235 29 29 chr13 35029287 35029355 -84715543 - MLT1J2 LTR MaLR -382 68 1 21 36 0 0 chr13 35029541 35029569 -84715329 + AT_rich Low_complexity Low_complexity 1 28 0 1070 297 161 17 chr13 35029594 35030608 -84714290 + L1MEc LINE L1 38 1240 -4873 427 372 7 0 chr13 35030770 35030915 -84713983 - L3 LINE CR1 -4 1573 1428 23 0 0 0 chr13 35031258 35031281 -84713617 + AT_rich Low_complexity Low_complexity 1 23 0 5734 161 16 19 chr13 35031783 35032744 -84712154 + L1PA16 LINE L1 4106 5068 -1098 1894 169 3 3 chr13 35032744 35033039 -84711859 - AluJb SINE Alu -17 295 1 5734 161 16 19 chr13 35033039 35033768 -84711130 + L1PA16 LINE L1 5068 5787 -379 1974 147 8 54 chr13 35033768 35034121 -84710777 - MER1B DNA MER1_type 0 337 1 5734 161 16 19 chr13 35034121 35034495 -84710403 + L1PA16 LINE L1 5787 6161 -5 344 236 11 22 chr13 35034690 35034779 -84710119 + MER5B DNA MER1_type 87 174 -4 22 0 0 0 chr13 35035032 35035054 -84709844 + AT_rich Low_complexity Low_complexity 1 22 0 3570 183 26 4 chr13 35035185 35035885 -84709013 - L1MB8 LINE L1 0 6178 5464 21 0 0 0 chr13 35035937 35035958 -84708940 + AT_rich Low_complexity Low_complexity 1 21 0 1678 139 66 17 chr13 35036093 35036380 -84708518 - AluJb SINE Alu -11 301 1 313 259 58 86 chr13 35036713 35036852 -84708046 - MIR3 SINE MIR -69 139 5 38 0 0 38 chr13 35037051 35037075 -84707823 + AT_rich Low_complexity Low_complexity 1 24 -27 2086 126 3 20 chr13 35037075 35037377 -84707521 - AluSx SINE Alu -15 297 1 38 0 0 38 chr13 35037377 35037405 -84707493 + AT_rich Low_complexity Low_complexity 24 51 0 365 292 62 8 chr13 35038107 35038237 -84706661 - MIR3 SINE MIR -23 185 49 723 217 0 0 chr13 35039289 35039446 -84705452 - L1M4 LINE L1 -5361 1181 1025 1805 213 21 77 chr13 35039484 35040043 -84704855 + L1MB7 LINE L1 38 565 -5977 874 139 0 29 chr13 35040044 35040181 -84704717 + AluSq/x SINE Alu 1 133 -180 882 161 76 85 chr13 35040207 35040431 -84704467 + AluSg/x SINE Alu 74 295 -15 4065 192 48 21 chr13 35040431 35041316 -84703582 + L1MB7 LINE L1 560 1467 -5075 2024 164 137 33 chr13 35041316 35041834 -84703064 + LTR49 LTR ERV1 1 572 -23 2426 245 49 17 chr13 35041849 35042736 -84702162 + L1MB7 LINE L1 1457 2505 -4320 517 238 0 21 chr13 35042736 35042879 -84702019 + L1MB7 LINE L1 4018 4157 -2487 441 234 44 0 chr13 35042875 35043012 -84701886 - L1M4 LINE L1 -3016 3130 2988 * 5246 205 36 21 chr13 35043017 35044362 -84700536 + L1MB7 LINE L1 4493 5877 -795 1116 174 158 26 chr13 35044362 35044592 -84700306 + MER2 DNA MER2_type 1 282 -62 218 32 32 0 chr13 35044592 35044623 -84700275 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1116 174 158 26 chr13 35044623 35044696 -84700202 + MER2 DNA MER2_type 282 344 0 5246 205 36 21 chr13 35044696 35045252 -84699646 + L1MB7 LINE L1 5877 6423 -249 2014 138 52 0 chr13 35045259 35045585 -84699313 + MER7A DNA MER2_type 6 346 0 1092 204 0 0 chr13 35045589 35045795 -84699103 + L1MB7 LINE L1 6420 6625 -57 687 217 0 0 chr13 35045815 35045944 -84698954 - FRAM SINE Alu -26 150 22 21 0 0 0 chr13 35045991 35046012 -84698886 + AT_rich Low_complexity Low_complexity 1 21 0 359 190 124 183 chr13 35046341 35046483 -84698415 - MER112 DNA MER1_type -1 259 139 1605 184 6 34 chr13 35046483 35046804 -84698094 + AluJo SINE Alu 1 312 0 359 190 124 183 chr13 35046804 35046935 -84697963 - MER112 DNA MER1_type -121 139 2 245 390 78 7 chr13 35047166 35047320 -84697578 - MIR SINE MIR -74 188 24 1758 163 27 18 chr13 35047338 35047669 -84697229 + MER44D DNA MER2_type 6 609 0 34 55 0 0 chr13 35047789 35047844 -84697054 + AT_rich Low_complexity Low_complexity 1 55 0 2135 251 81 30 chr13 35048799 35049339 -84695559 - L1ME3A LINE L1 -36 6134 5544 1915 152 139 16 chr13 35049339 35049720 -84695178 + MSTA LTR MaLR 1 428 0 2135 251 81 30 chr13 35049720 35049936 -84694962 - L1ME3A LINE L1 -626 5544 5340 265 366 5 31 chr13 35050415 35050609 -84694289 + ERVL LTR ERVL 5076 5264 -500 453 186 52 0 chr13 35050655 35050752 -84694146 + LTR16A LTR ERVL 296 397 -53 2033 140 0 7 chr13 35050752 35051044 -84693854 + AluSx SINE Alu 1 290 -22 2200 112 3 0 chr13 35051059 35051355 -84693543 + AluSp SINE Alu 1 297 -16 304 263 0 0 chr13 35051362 35051419 -84693479 + LTR16A LTR ERVL 386 442 -8 2334 191 16 56 chr13 35051657 35052143 -84692755 + MER68 LTR ERV1 1 467 -95 417 153 0 0 chr13 35052168 35052240 -84692658 + GA-rich Low_complexity Low_complexity 4 75 0 417 277 11 0 chr13 35052240 35052334 -84692564 + MER68 LTR ERV1 466 560 -2 275 172 17 69 chr13 35052339 35052397 -84692501 + MER77 LTR ERV1 551 605 0 1742 167 13 10 chr13 35052831 35053131 -84691767 - AluJo SINE Alu -11 301 1 5664 132 24 52 chr13 35053274 35054326 -84690572 + Tigger1 DNA MER2_type 1 1022 -1396 8315 120 28 10 chr13 35054461 35055835 -84689063 + Tigger1 DNA MER2_type 1021 2418 0 33 25 0 0 chr13 35055881 35055921 -84688977 + AT_rich Low_complexity Low_complexity 1 40 0 283 295 39 0 chr13 35057490 35057568 -84687330 - L2 LINE L2 0 3272 3192 211 320 131 42 chr13 35057725 35057984 -84686914 - L2 LINE L2 -339 2975 2694 640 298 57 66 chr13 35058079 35058428 -84686470 + L3 LINE CR1 1069 1414 -163 470 241 138 69 chr13 35059399 35059631 -84685267 - MIR SINE MIR 0 262 15 189 333 141 0 chr13 35059646 35059745 -84685153 - L2 LINE L2 -237 3035 2923 217 323 88 80 chr13 35060104 35060367 -84684531 + L2 LINE L2 2074 2338 -976 2152 123 7 0 chr13 35060868 35061169 -84683729 - AluSg SINE Alu -7 303 1 21 36 0 0 chr13 35061679 35061707 -84683191 + AT_rich Low_complexity Low_complexity 1 28 0 2246 106 0 3 chr13 35061810 35062111 -84682787 - AluSx SINE Alu -12 300 1 226 241 17 0 chr13 35062135 35062193 -84682705 - MIR SINE MIR 0 262 204 2061 112 17 3 chr13 35062918 35063212 -84681686 + AluSx SINE Alu 3 300 -12 1825 133 82 20 chr13 35063785 35064138 -84680760 - THE1C LTR MaLR 0 375 1 2197 113 3 0 chr13 35064958 35065259 -84679639 + AluSc SINE Alu 1 302 -7 360 282 68 8 chr13 35065259 35065376 -84679522 + L2 LINE L2 3137 3260 -12 225 262 202 0 chr13 35065389 35065473 -84679425 + MIR3 SINE MIR 87 187 -21 3908 117 44 2 chr13 35065833 35066442 -84678456 + MER41B LTR ERV1 1 635 0 1061 186 320 53 chr13 35066897 35067385 -84677513 - MER51A LTR ERV1 -16 618 1 611 303 51 0 chr13 35067581 35067756 -84677142 - MIR SINE MIR -48 214 31 874 338 38 11 chr13 35068526 35068976 -84675922 + HERVL LTR ERVL 3893 4354 -1300 189 355 0 37 chr13 35070574 35070681 -84674217 - L2 LINE L2 -2497 817 715 22 35 0 0 chr13 35071055 35071084 -84673814 + AT_rich Low_complexity Low_complexity 1 29 0 465 268 57 0 chr13 35072284 35072407 -84672491 - L2 LINE L2 0 3313 3184 835 212 94 0 chr13 35072409 35072621 -84672277 - L1MCa LINE L1 -3413 3151 2920 * 871 277 5 8 chr13 35072613 35072882 -84672016 - L1MCa LINE L1 -5795 323 3 1161 306 23 24 chr13 35072887 35073741 -84671157 - HERV16 LTR ERVL -2419 2577 1664 865 320 48 17 chr13 35073774 35074252 -84670646 - HERV16 LTR ERVL -4221 775 283 484 241 42 47 chr13 35074473 35074685 -84670213 - LTR16B LTR ERVL -12 452 242 746 131 0 0 chr13 35074702 35074809 -84670089 + U6 snRNA snRNA 1 107 0 13665 174 29 19 chr13 35074809 35076357 -84668541 + L1PB3 LINE L1 2458 3990 -2880 2143 134 3 0 chr13 35076357 35076655 -84668243 + AluSx SINE Alu 1 299 -13 13665 174 29 19 chr13 35076655 35079337 -84665561 + L1PB3 LINE L1 3990 6721 -149 2244 112 0 13 chr13 35079337 35079650 -84665248 + AluSg SINE Alu 1 309 -1 13665 174 29 19 chr13 35079650 35079801 -84665097 + L1PB3 LINE L1 6721 6869 -1 409 338 25 50 chr13 35079850 35080051 -84664847 - LTR16B LTR ERVL -268 196 1 21 0 0 0 chr13 35080061 35080082 -84664816 + AT_rich Low_complexity Low_complexity 1 21 0 355 337 92 30 chr13 35080155 35080490 -84664408 - HAL1 LINE L1 -1846 661 306 22 0 0 0 chr13 35081148 35081170 -84663728 + AT_rich Low_complexity Low_complexity 1 22 0 2495 44 10 0 chr13 35082403 35082701 -84662197 - AluY SINE Alu -10 301 1 217 224 122 0 chr13 35084440 35084489 -84660409 + MER5B DNA MER1_type 50 104 -74 472 225 15 22 chr13 35084513 35084707 -84660191 + L1ME3 LINE L1 5654 5825 -337 * 3495 56 2 2 chr13 35084559 35085022 -84659876 + L1PA10 LINE L1 5704 6166 -2 2114 82 60 0 chr13 35085214 35085496 -84659402 + AluSx SINE Alu 1 299 -13 525 276 156 16 chr13 35085721 35085913 -84658985 - MIR SINE MIR -21 241 23 486 357 130 34 chr13 35086070 35086924 -84657974 + L2 LINE L2 1955 2890 -424 307 267 200 13 chr13 35087041 35087191 -84657707 + MER5B DNA MER1_type 1 178 0 746 260 41 32 chr13 35087199 35087418 -84657480 + MER58A DNA MER1_type 1 221 -3 266 298 6 57 chr13 35088390 35088548 -84656350 + MLT1J1 LTR MaLR 1 150 -296 372 268 6 55 chr13 35088631 35088814 -84656084 + MLT1J LTR MaLR 260 433 -78 23 0 0 0 chr13 35088894 35088917 -84655981 + AT_rich Low_complexity Low_complexity 1 23 0 314 89 13 127 chr13 35089082 35089115 -84655783 + L1MB4 LINE L1 6109 6129 -51 1866 166 3 0 chr13 35089115 35089410 -84655488 + AluJb SINE Alu 1 296 -16 314 89 13 127 chr13 35089410 35089455 -84655443 + L1MB4 LINE L1 6129 6178 -2 293 230 15 30 chr13 35091593 35091728 -84653170 + (TA)n Simple_repeat Simple_repeat 1 133 0 513 286 105 46 chr13 35091805 35092043 -84652855 - MIR SINE MIR -3 259 8 21 0 0 0 chr13 35092733 35092754 -84652144 + AT_rich Low_complexity Low_complexity 1 21 0 2217 111 0 29 chr13 35092801 35093117 -84651781 + AluSx SINE Alu 1 307 -5 543 53 0 0 chr13 35093119 35093194 -84651704 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 375 145 53 0 chr13 35093215 35093299 -84651599 - LTR38B LTR ERV1 -1 610 522 1140 149 70 13 chr13 35093326 35093554 -84651344 + LTR38B LTR ERV1 345 585 -25 820 299 12 16 chr13 35093635 35093886 -84651012 + LTR38B-int LTR ERV1 115 364 -1422 205 156 0 0 chr13 35094135 35094167 -84650731 + CT-rich Low_complexity Low_complexity 1 32 0 4996 147 73 79 chr13 35094168 35095532 -84649366 + MER4D-int LTR ERV1 100 1471 -2550 2339 79 0 25 chr13 35095532 35095848 -84649050 - AluY SINE Alu -3 308 1 4996 147 73 79 chr13 35095848 35097314 -84647584 + MER4D-int LTR ERV1 1471 4021 0 392 211 66 40 chr13 35097314 35097450 -84647448 + MER4D-int LTR ERV1 4594 4733 -1865 690 186 6 98 chr13 35097582 35097765 -84647133 + MER4D-int LTR ERV1 3787 3952 -4168 560 140 103 10 chr13 35098015 35098154 -84646744 + MER4D-int LTR ERV1 3950 6134 -624 1348 194 42 9 chr13 35098160 35098511 -84646387 + MER4D-int LTR ERV1 6385 7097 0 1329 105 9 22 chr13 35098523 35098752 -84646146 + MER4D LTR ERV1 9 234 -638 23 0 0 0 chr13 35099054 35099077 -84645821 + AT_rich Low_complexity Low_complexity 1 23 0 386 341 29 29 chr13 35099139 35099344 -84645554 - L1M4 LINE L1 -1957 4189 3985 21 0 0 0 chr13 35099351 35099372 -84645526 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 35099387 35099422 -84645476 + AT_rich Low_complexity Low_complexity 1 35 0 185 333 0 0 chr13 35099469 35099517 -84645381 - L2 LINE L2 -1045 2269 2222 2121 117 7 19 chr13 35099521 35099828 -84645070 - AluSq SINE Alu -10 303 1 231 269 45 0 chr13 35099828 35099895 -84645003 + MIR SINE MIR 120 189 -73 1814 260 53 13 chr13 35100158 35100685 -84644213 - L2 LINE L2 -1483 1831 1284 746 272 181 48 chr13 35100918 35101436 -84643462 + MLT1G1 LTR MaLR 1 587 -8 388 279 82 14 chr13 35101504 35101651 -84643247 + MIR SINE MIR 41 197 -65 1712 195 65 36 chr13 35102109 35102572 -84642326 - LTR2B LTR ERV1 0 490 1 189 386 14 73 chr13 35102578 35102798 -84642100 + L2 LINE L2 2972 3178 -94 22 35 0 0 chr13 35103022 35103051 -84641847 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr13 35103395 35103438 -84641460 + AT_rich Low_complexity Low_complexity 1 43 0 2410 74 0 10 chr13 35103618 35103927 -84640971 - AluSg SINE Alu -4 306 1 338 225 34 22 chr13 35104149 35104238 -84640660 - L2 LINE L2 -3 3310 3221 529 291 19 34 chr13 35104287 35104493 -84640405 - MIR SINE MIR -48 214 12 1720 90 59 67 chr13 35105948 35106304 -84638594 - MER4E LTR ERV1 -2 777 425 872 219 35 101 chr13 35106381 35106719 -84638179 + MLT2D LTR ERVL 91 406 -8 2022 112 7 20 chr13 35106850 35107144 -84637754 - AluSg SINE Alu -20 290 1 1690 222 158 21 chr13 35107244 35107557 -84637341 + L1MEc LINE L1 35 304 -6092 3670 81 140 27 chr13 35107557 35108150 -84636748 - PABL_A LTR ERV1 0 660 1 1690 222 158 21 chr13 35108150 35108511 -84636387 + L1MEc LINE L1 304 802 -5594 637 152 0 9 chr13 35108520 35108625 -84636273 - FLAM_C SINE Alu -35 108 5 307 320 128 57 chr13 35108702 35109068 -84635830 + L1ME LINE L1 4639 5030 -1116 330 272 130 6 chr13 35109299 35109468 -84635430 + L1ME LINE L1 5623 5812 -358 976 224 14 0 chr13 35109875 35110089 -84634809 - MER58A DNA MER1_type -7 217 1 2048 122 80 11 chr13 35110141 35110517 -84634381 - L1MA3 LINE L1 0 6305 5904 21 36 0 0 chr13 35111257 35111285 -84633613 + AT_rich Low_complexity Low_complexity 1 28 0 919 290 107 30 chr13 35112640 35113071 -84631827 + L2 LINE L2 2849 3312 -1 337 263 30 30 chr13 35114301 35114400 -84630498 + MIR SINE MIR 40 138 -70 2333 94 0 0 chr13 35116497 35116794 -84628104 + AluY SINE Alu 1 297 -14 3334 117 86 16 chr13 35116855 35117436 -84627462 + L1PA16 LINE L1 5545 6166 0 556 275 145 19 chr13 35117547 35117754 -84627144 + MIR SINE MIR 21 253 -9 2559 161 57 39 chr13 35118009 35118848 -84626050 - MER73 LTR ERVL -4 640 1 2172 112 10 0 chr13 35119341 35119644 -84625254 + AluSq SINE Alu 2 307 -6 704 103 0 47 chr13 35120153 35120260 -84624638 - FLAM_A SINE Alu -24 118 17 3376 144 29 10 chr13 35120807 35121397 -84623501 + MER7C DNA MER2_type 1 601 -1 472 185 198 51 chr13 35121466 35121623 -84623275 - MER5A DNA MER1_type 0 189 10 239 195 49 73 chr13 35123825 35123859 -84621039 + AluY SINE Alu 1 34 -266 3466 54 9 5 chr13 35123859 35124305 -84620593 + LTR7 LTR ERV1 1 448 -2 239 195 49 73 chr13 35124305 35124352 -84620546 + AluY SINE Alu 34 80 -220 19010 87 57 34 chr13 35124352 35127524 -84617374 + HERVH LTR ERV1 46 3290 -4423 3273 107 0 6 chr13 35127514 35128019 -84616879 + HERVH LTR ERV1 3492 3993 -3720 * 4086 138 6 1 chr13 35128021 35128680 -84616218 + HERVH LTR ERV1 4488 5149 -2564 1267 143 19 0 chr13 35128681 35128897 -84616001 + HERVH LTR ERV1 5600 5819 -1894 2443 71 45 13 chr13 35128897 35129275 -84615623 + HERVH LTR ERV1 7324 7713 0 3550 51 0 7 chr13 35129275 35129726 -84615172 + LTR7 LTR ERV1 1 448 -2 1829 147 0 4 chr13 35129728 35130008 -84614890 + AluSx SINE Alu 30 312 0 1731 246 79 13 chr13 35131665 35132198 -84612700 + MLT1G LTR MaLR 23 590 0 3258 59 2 7 chr13 35132221 35132665 -84612233 - LTR7 LTR ERV1 -8 442 1 2264 136 17 8 chr13 35133406 35133767 -84611131 - MLT1A1 LTR MaLR 0 365 2 283 244 24 0 chr13 35135068 35135150 -84609748 + L1MC4a LINE L1 5841 5924 -1884 2126 98 0 21 chr13 35135240 35135527 -84609371 + AluSx SINE Alu 1 281 -31 187 238 0 0 chr13 35135791 35135833 -84609065 - L2 LINE L2 0 3313 3272 275 372 24 64 chr13 35135899 35136195 -84608703 + L2 LINE L2 2936 3219 -53 1018 169 0 28 chr13 35136470 35136648 -84608250 + AluJb SINE Alu 123 295 -17 22 35 0 0 chr13 35137348 35137377 -84607521 + AT_rich Low_complexity Low_complexity 1 29 0 231 36 0 0 chr13 35137961 35137989 -84606909 + (CA)n Simple_repeat Simple_repeat 1 28 0 23 54 0 0 chr13 35138317 35138354 -84606544 + AT_rich Low_complexity Low_complexity 1 37 0 770 289 72 0 chr13 35138537 35138772 -84606126 - MIR SINE MIR 0 262 11 691 222 49 6 chr13 35139542 35139704 -84605194 - MIR SINE MIR -63 199 31 2000 136 0 37 chr13 35139744 35140067 -84604831 + AluSx SINE Alu 1 311 -1 183 80 0 0 chr13 35140540 35140565 -84604333 + (T)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr13 35140952 35140980 -84603918 + AT_rich Low_complexity Low_complexity 1 28 0 1080 165 52 19 chr13 35141930 35142142 -84602756 - MER20 DNA MER1_type 0 219 1 21 57 0 0 chr13 35142345 35142380 -84602518 + AT_rich Low_complexity Low_complexity 1 35 0 332 299 25 70 chr13 35143407 35143564 -84601334 + L2 LINE L2 3164 3313 0 682 233 99 31 chr13 35143932 35144621 -84600277 + L1MB5 LINE L1 5323 6082 -80 3655 170 40 28 chr13 35144621 35144870 -84600028 + MER44D DNA MER2_type 1 245 -2242 2155 121 32 22 chr13 35144870 35145241 -84599657 + THE1C LTR MaLR 1 375 0 3655 170 40 28 chr13 35145241 35145715 -84599183 + MER44D DNA MER2_type 245 605 0 1931 268 96 55 chr13 35145801 35146492 -84598406 + HAL1 LINE L1 90 751 -1756 222 105 0 0 chr13 35146492 35146530 -84598368 + (CA)n Simple_repeat Simple_repeat 1 38 0 1931 268 96 55 chr13 35146530 35146926 -84597972 + HAL1 LINE L1 751 1129 -1378 1683 115 35 8 chr13 35146926 35147187 -84597711 + AluSx SINE Alu 40 307 -5 1931 268 96 55 chr13 35147187 35147319 -84597579 + HAL1 LINE L1 1129 1254 -1253 1898 152 10 16 chr13 35147319 35147628 -84597270 + AluJo SINE Alu 1 307 -5 1931 268 96 55 chr13 35147628 35147655 -84597243 + HAL1 LINE L1 1254 1278 -1229 2049 86 0 4 chr13 35147655 35147922 -84596976 + AluY SINE Alu 41 306 -5 1931 268 96 55 chr13 35147922 35148125 -84596773 + HAL1 LINE L1 1278 1602 -905 904 275 128 18 chr13 35148220 35148718 -84596180 + HAL1 LINE L1 1857 2409 -98 1205 181 33 13 chr13 35148792 35149096 -84595802 - MER33 DNA MER1_type -6 318 9 289 315 158 7 chr13 35149696 35149842 -84595056 - MIR SINE MIR -9 253 86 626 197 105 7 chr13 35149842 35149994 -84594904 + MER58C DNA MER1_type 46 212 -3 898 164 175 26 chr13 35150046 35150235 -84594663 - MER20 DNA MER1_type 0 219 3 842 262 33 50 chr13 35150242 35150544 -84594354 + Charlie2 DNA MER1_type 2 298 -2564 1027 244 137 18 chr13 35150592 35151140 -84593758 + Charlie2 DNA MER1_type 2232 2844 -18 189 289 324 0 chr13 35151236 35151378 -84593520 - MIR SINE MIR -7 255 68 1027 116 0 43 chr13 35151435 35151599 -84593299 + FRAM SINE Alu 19 175 -1 22 0 0 0 chr13 35153964 35153986 -84590912 + GC_rich Low_complexity Low_complexity 1 22 0 1687 147 0 8 chr13 35154756 35155014 -84589884 - AluSx SINE Alu -15 297 42 527 123 0 0 chr13 35155014 35155087 -84589811 - AluS SINE Alu -240 73 1 1057 176 66 25 chr13 35155175 35155493 -84589405 - Charlie2 DNA MER1_type 0 2862 2532 1655 155 11 7 chr13 35155538 35155816 -84589082 + AluJb SINE Alu 1 279 -33 239 257 37 9 chr13 35155844 35155953 -84588945 - Charlie2 DNA MER1_type -376 2486 2375 2045 182 36 49 chr13 35155980 35156516 -84588382 + L1M4 LINE L1 4225 4755 -1391 2189 104 7 0 chr13 35156516 35156815 -84588083 + AluSp SINE Alu 1 301 -12 2045 182 36 49 chr13 35156815 35156834 -84588064 + L1M4 LINE L1 4755 4773 -1373 760 283 135 7 chr13 35156834 35157138 -84587760 + MER69 DNA AcHobo 286 628 -598 1172 185 198 0 chr13 35157144 35157542 -84587356 + MER69 DNA AcHobo 2043 2521 -5 273 192 39 26 chr13 35157559 35157637 -84587261 - Charlie2a DNA MER1_type -2176 686 608 471 256 279 0 chr13 35158285 35158504 -84586394 - Charlie2a DNA MER1_type -2569 293 14 468 273 159 18 chr13 35158527 35158723 -84586175 + MIR SINE MIR 5 237 -25 806 140 7 37 chr13 35158723 35158859 -84586039 + FLAM_C SINE Alu 2 133 0 468 273 159 18 chr13 35158859 35158882 -84586016 + MIR SINE MIR 237 255 -7 1658 175 0 45 chr13 35160198 35160506 -84584392 + AluJb SINE Alu 1 294 -18 234 91 0 0 chr13 35160666 35160699 -84584199 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 2777 190 44 10 chr13 35160940 35161534 -84583364 - MER90 LTR ERV1 0 614 1 1785 224 35 25 chr13 35161812 35162323 -84582575 + MER77 LTR ERV1 1 597 -8 346 250 13 0 chr13 35162568 35162644 -84582254 - L2 LINE L2 0 3272 3196 972 194 6 0 chr13 35162690 35162860 -84582038 - FRAM SINE Alu -6 170 1 2733 111 24 32 chr13 35163186 35163327 -84581571 + MER4E LTR ERV1 1 142 -624 482 95 12 60 chr13 35163327 35163411 -84581487 - MADE1 DNA Mariner 0 80 1 2733 111 24 32 chr13 35163411 35163455 -84581443 + MER4E LTR ERV1 142 185 -581 2845 104 60 39 chr13 35163455 35163937 -84580961 + LTR22B LTR ERVK 1 492 0 2733 111 24 32 chr13 35163937 35164358 -84580540 + MER4E LTR ERV1 185 766 0 207 338 26 0 chr13 35166574 35166651 -84578247 - MIR SINE MIR -128 134 56 219 330 25 85 chr13 35166784 35166902 -84577996 - MIR SINE MIR -151 111 1 378 309 79 26 chr13 35167048 35167200 -84577698 + MIR SINE MIR 52 211 -51 632 259 121 45 chr13 35167214 35167438 -84577460 + MIR SINE MIR 1 241 -21 26 0 0 0 chr13 35167451 35167477 -84577421 + AT_rich Low_complexity Low_complexity 1 26 0 2060 92 0 0 chr13 35167548 35167809 -84577089 + AluY SINE Alu 1 261 -50 322 278 21 21 chr13 35168070 35168167 -84576731 - MIR SINE MIR -3 259 163 1894 132 4 0 chr13 35168926 35169206 -84575692 - AluSq SINE Alu 0 313 33 2266 100 0 7 chr13 35169603 35169902 -84574996 + AluSx SINE Alu 1 297 -15 403 167 117 0 chr13 35170564 35170659 -84574239 - MER5A DNA MER1_type -77 112 4 399 119 0 0 chr13 35170886 35170953 -84573945 + (TC)n Simple_repeat Simple_repeat 2 68 0 185 81 0 27 chr13 35171294 35171331 -84573567 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 605 206 82 38 chr13 35171331 35171606 -84573292 - L1MD3 LINE L1 -11 7984 6080 326 340 106 30 chr13 35171606 35171974 -84572924 + L2 LINE L2 2102 2497 -817 337 305 16 75 chr13 35171980 35172084 -84572814 - MIR SINE MIR 0 262 172 481 250 44 61 chr13 35172084 35172264 -84572634 - MER69A DNA AcHobo 0 177 1 337 305 16 75 chr13 35172264 35172346 -84572552 - MIR SINE MIR -90 172 87 306 348 79 0 chr13 35172360 35172538 -84572360 + L2 LINE L2 2589 2780 -534 325 337 31 0 chr13 35173230 35173328 -84571570 + L2 LINE L2 3169 3269 -3 437 309 137 44 chr13 35173385 35173793 -84571105 + L2 LINE L2 2468 2913 -401 1249 141 5 0 chr13 35174193 35174392 -84570506 + LTR9B LTR ERV1 445 644 0 1232 136 0 0 chr13 35174434 35174633 -84570265 + HUERS-P3 LTR ERV1 8718 8916 -3 3050 106 50 10 chr13 35174641 35175142 -84569756 + LTR9B LTR ERV1 42 562 -82 21 36 0 0 chr13 35175142 35175170 -84569728 + AT_rich Low_complexity Low_complexity 1 28 0 204 212 45 91 chr13 35175734 35175800 -84569098 - L2 LINE L2 -40 3232 3170 2250 100 10 0 chr13 35176256 35176555 -84568343 + AluSc SINE Alu 1 302 -7 183 328 0 0 chr13 35177294 35177358 -84567540 - L2 LINE L2 0 3313 3250 256 259 121 52 chr13 35178024 35178140 -84566758 + MIR3 SINE MIR 58 181 -27 285 29 0 0 chr13 35178381 35178415 -84566483 + (CA)n Simple_repeat Simple_repeat 2 35 0 896 223 27 0 chr13 35178467 35178651 -84566247 - MER5A DNA MER1_type 0 189 1 567 29 0 0 chr13 35179109 35179178 -84565720 + (CA)n Simple_repeat Simple_repeat 2 70 0 2410 92 48 28 chr13 35180195 35180552 -84564346 + THE1B LTR MaLR 1 364 0 1356 134 99 95 chr13 35180724 35181038 -84563860 - AluJb SINE Alu 0 315 1 2201 105 11 0 chr13 35181345 35181631 -84563267 - AluSc SINE Alu -19 290 2 293 309 52 15 chr13 35182874 35183010 -84561888 - MIR SINE MIR -110 152 12 1883 153 3 31 chr13 35183073 35183393 -84561505 - AluJb SINE Alu -1 311 1 2209 109 0 6 chr13 35184068 35184380 -84560518 - AluSp SINE Alu -1 312 3 227 31 31 0 chr13 35184916 35184948 -84559950 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1708 156 11 7 chr13 35184951 35185226 -84559672 - AluJb SINE Alu -35 277 2 667 129 0 170 chr13 35186430 35186601 -84558297 + AluJb SINE Alu 4 145 -167 1924 129 7 4 chr13 35186601 35186880 -84558018 + AluSq SINE Alu 2 281 -32 444 82 0 0 chr13 35186880 35186941 -84557957 + (GAGAA)n Simple_repeat Simple_repeat 5 65 0 461 243 35 62 chr13 35193897 35194041 -84550857 - L2 LINE L2 -4 3309 3170 215 266 46 46 chr13 35194057 35194166 -84550732 - L2 LINE L2 -438 2876 2768 2061 291 102 16 chr13 35194195 35194995 -84549903 - L2 LINE L2 -518 2796 1928 185 229 72 60 chr13 35195032 35195115 -84549783 - L2 LINE L2 -3 3310 3227 351 207 75 126 chr13 35195996 35196046 -84548852 + L1MEd LINE L1 436 487 -5632 2237 96 0 0 chr13 35196046 35196352 -84548546 - AluSx SINE Alu 0 306 1 351 207 75 126 chr13 35196352 35196474 -84548424 + L1MEd LINE L1 487 600 -5519 687 264 38 27 chr13 35196618 35196910 -84547988 + L1MEd LINE L1 895 1189 -4930 234 106 85 0 chr13 35196909 35196956 -84547942 + L1MB5 LINE L1 6108 6158 -16 * 16525 151 51 15 chr13 35197037 35199397 -84545501 + L1M1 LINE L1 602 3180 -4385 1419 62 21 0 chr13 35199397 35199589 -84545309 - L1PA4 LINE L1 0 6155 5960 16525 151 51 15 chr13 35199589 35201366 -84543532 + L1M1 LINE L1 3180 4891 -2674 863 172 0 0 chr13 35201843 35202012 -84542886 + CT-rich Low_complexity Low_complexity 4 172 0 847 92 42 0 chr13 35202060 35202180 -84542718 - AluJo SINE Alu -174 138 14 1740 163 3 11 chr13 35203728 35204048 -84540850 + AluJb SINE Alu 3 320 0 2173 127 0 20 chr13 35204690 35204990 -84539908 + AluSx SINE Alu 3 296 -16 22 56 0 0 chr13 35205128 35205164 -84539734 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr13 35205819 35205848 -84539050 + AT_rich Low_complexity Low_complexity 1 29 0 2112 173 6 6 chr13 35206424 35206788 -84538110 - MLT1A1 LTR MaLR 0 365 2 1907 155 30 19 chr13 35206995 35207357 -84537541 - THE1C LTR MaLR -9 366 1 686 270 78 15 chr13 35207460 35207664 -84537234 - MIR SINE MIR -43 219 3 26 64 0 0 chr13 35208061 35208108 -84536790 + AT_rich Low_complexity Low_complexity 1 47 0 710 175 9 0 chr13 35209355 35209469 -84535429 + AluJo SINE Alu 6 120 -192 22 0 0 0 chr13 35209469 35209491 -84535407 + AT_rich Low_complexity Low_complexity 1 22 0 1154 188 0 5 chr13 35209500 35209697 -84535201 + AluJo SINE Alu 101 296 -16 2009 146 7 3 chr13 35210521 35210823 -84534075 - AluSx SINE Alu -9 303 1 2269 114 0 3 chr13 35211422 35211728 -84533170 + AluSc SINE Alu 1 305 -4 1769 294 127 41 chr13 35211921 35212289 -84532609 - L2 LINE L2 0 3313 2978 207 0 0 0 chr13 35212289 35212312 -84532586 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1769 294 127 41 chr13 35212312 35212503 -84532395 - L2 LINE L2 -335 2978 2805 2116 133 7 0 chr13 35212503 35212804 -84532094 - AluSx SINE Alu -5 307 5 1769 294 127 41 chr13 35212804 35213516 -84531382 - L2 LINE L2 -508 2805 1941 254 349 89 29 chr13 35213894 35214328 -84530570 - L2 LINE L2 -181 3091 2633 2088 112 4 0 chr13 35214414 35214691 -84530207 + AluSx SINE Alu 2 279 -33 450 0 0 0 chr13 35214691 35214741 -84530157 + (GAAAA)n Simple_repeat Simple_repeat 5 54 0 198 252 74 0 chr13 35217093 35217160 -84527738 + MIR SINE MIR 23 95 -113 1573 148 64 33 chr13 35217435 35217765 -84527133 + THE1C LTR MaLR 1 340 -35 2507 55 0 10 chr13 35217977 35218288 -84526610 + AluY SINE Alu 1 308 -3 1687 188 10 3 chr13 35218485 35218777 -84526121 - AluJb SINE Alu -18 294 1 8682 172 35 20 chr13 35219170 35219846 -84525052 - L1 LINE L1 -1788 4358 3693 2293 116 0 3 chr13 35219846 35220157 -84524741 - AluSq SINE Alu -3 310 1 8682 172 35 20 chr13 35220157 35221384 -84523514 - L1 LINE L1 -2453 3693 2427 2298 113 0 0 chr13 35221384 35221685 -84523213 + AluSq SINE Alu 1 301 -12 309 317 57 8 chr13 35223137 35223260 -84521638 + L2 LINE L2 3142 3270 -2 941 196 20 0 chr13 35223286 35223490 -84521408 + LTR55 LTR ERV 1 208 -340 239 300 100 20 chr13 35223645 35223745 -84521153 - MIR SINE MIR -64 144 37 617 231 113 25 chr13 35224026 35224264 -84520634 + MIR SINE MIR 4 262 0 23 33 0 0 chr13 35225115 35225145 -84519753 + AT_rich Low_complexity Low_complexity 1 30 0 255 230 0 27 chr13 35226597 35226671 -84518227 + MLT1B LTR MaLR 220 291 -99 529 173 19 10 chr13 35226679 35226783 -84518115 - MLT1A1 LTR MaLR -78 287 183 12168 144 19 9 chr13 35226783 35229692 -84515206 + L1PA11 LINE L1 3262 6172 -2 232 317 92 43 chr13 35230634 35230798 -84514100 + L2 LINE L2 2885 3056 -257 205 366 40 40 chr13 35231015 35231116 -84513782 + L2 LINE L2 3169 3269 -3 1029 105 11 22 chr13 35232077 35232258 -84512640 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 465 138 0 0 chr13 35232258 35232338 -84512560 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 600 128 0 21 chr13 35232365 35232459 -84512439 - AluJ/FLAM SINE Alu -220 92 1 2087 141 3 3 chr13 35232584 35232890 -84512008 + AluJb SINE Alu 1 306 -6 616 245 170 0 chr13 35233443 35233602 -84511296 + MER5A DNA MER1_type 4 189 0 338 258 129 45 chr13 35234793 35234948 -84509950 + MIR SINE MIR 89 256 -6 312 264 35 11 chr13 35234959 35235046 -84509852 - MIR SINE MIR -165 97 9 180 314 0 0 chr13 35235060 35235111 -84509787 + L2 LINE L2 3007 3057 -215 249 288 0 0 chr13 35235633 35235706 -84509192 + (TA)n Simple_repeat Simple_repeat 2 74 0 1945 113 45 3 chr13 35237597 35237889 -84507009 + AluSx SINE Alu 1 304 -8 1147 188 58 14 chr13 35237889 35238339 -84506559 + MER63C DNA MER1_type 22 527 -403 1602 180 30 33 chr13 35238339 35238672 -84506226 - MER58B DNA MER1_type -1 340 9 1767 191 37 29 chr13 35238680 35238978 -84505920 + MER63C DNA MER1_type 519 822 -239 2345 90 3 3 chr13 35238978 35239289 -84505609 - AluSx SINE Alu -1 311 1 1767 191 37 29 chr13 35239289 35239398 -84505500 + MER63C DNA MER1_type 822 929 -2 181 226 19 19 chr13 35239460 35239513 -84505385 - L3 LINE CR1 -234 1343 1291 509 283 60 5 chr13 35239626 35239810 -84505088 - MIR SINE MIR -4 258 65 216 316 173 12 chr13 35239909 35239971 -84504927 + L2 LINE L2 2334 2385 -929 252 0 0 0 chr13 35239971 35239999 -84504899 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 216 316 173 12 chr13 35239999 35240104 -84504794 + L2 LINE L2 2385 2528 -786 351 135 144 58 chr13 35240104 35240208 -84504690 + Tigger3(Golem) DNA MER2_type 2762 2874 -155 2358 61 0 10 chr13 35240230 35240527 -84504371 + AluY SINE Alu 1 294 -17 2185 127 0 0 chr13 35240530 35240830 -84504068 + AluSx SINE Alu 1 300 -12 251 304 0 0 chr13 35240830 35240886 -84504012 + Tigger3(Golem) DNA MER2_type 2973 3028 -1 3127 153 19 5 chr13 35240887 35241708 -84503190 - L1M2 LINE L1 -505 7205 6378 7624 190 30 41 chr13 35241718 35242344 -84502554 - L1M2 LINE L1 -2098 5467 4835 2367 93 0 10 chr13 35242344 35242654 -84502244 - AluSx SINE Alu -5 307 1 7624 190 30 41 chr13 35242654 35244215 -84500683 - L1M2 LINE L1 -2730 4835 3313 588 262 85 0 chr13 35244288 35244452 -84500446 + MIR SINE MIR 79 256 -6 207 140 18 211 chr13 35244771 35244885 -84500013 - MER91C DNA MER1_type -32 108 17 8576 166 21 25 chr13 35245405 35248056 -84496842 - L1MA4 LINE L1 -230 7489 4856 39707 62 5 1 chr13 35248072 35254197 -84490701 - L1PA5 LINE L1 -4 6150 1 3757 210 29 20 chr13 35254197 35255261 -84489637 - L1MA4 LINE L1 -2696 4869 3796 1171 248 16 9 chr13 35255278 35255593 -84489305 + L1M1 LINE L1 1782 2098 -5467 2069 247 35 42 chr13 35255731 35256182 -84488716 - L1MA4 LINE L1 -6979 586 133 1267 91 0 23 chr13 35256182 35256358 -84488540 - AluSg/x SINE Alu 0 312 141 2315 93 3 0 chr13 35256196 35256497 -84488401 - AluSx SINE Alu -10 302 1 2069 247 35 42 chr13 35256497 35256605 -84488293 - L1MA4 LINE L1 -7571 4294967290 17 225 276 110 68 chr13 35256616 35256779 -84488119 - L2 LINE L2 -245 3027 2858 6171 201 27 30 chr13 35258403 35260798 -84484100 + L1M3f LINE L1 6 2382 -3946 644 36 12 0 chr13 35260798 35260881 -84484017 + (GGAA)n Simple_repeat Simple_repeat 2 85 0 2513 176 47 11 chr13 35261405 35261431 -84483467 - L1MA4 LINE L1 -7 6995 6971 1963 124 0 0 chr13 35261431 35261706 -84483192 + AluSx SINE Alu 35 309 -3 2513 176 47 11 chr13 35261706 35262297 -84482601 - L1MA4 LINE L1 -31 6971 6309 9239 192 25 10 chr13 35262325 35264396 -84480502 - L1MA4 LINE L1 -1769 5079 2978 1049 178 0 0 chr13 35264396 35264570 -84480328 - FRAM SINE Alu -3 173 1 3384 189 53 30 chr13 35264572 35265083 -84479815 - L1MA4 LINE L1 -3862 2986 2441 2282 152 5 13 chr13 35265083 35265459 -84479439 + THE1C LTR MaLR 1 373 -2 3384 189 53 30 chr13 35265459 35265901 -84478997 - L1MA4 LINE L1 -4407 2441 2011 236 30 30 0 chr13 35265943 35265976 -84478922 + (TTA)n Simple_repeat Simple_repeat 3 36 0 25611 28 0 0 chr13 35265976 35269789 -84475109 - L1PA3 LINE L1 -18 6137 2326 600 240 76 70 chr13 35270256 35270529 -84474369 + L1MC4 LINE L1 7495 7824 -171 409 276 24 24 chr13 35271286 35271420 -84473478 - MLT1I LTR MaLR -232 177 58 225 0 0 0 chr13 35271815 35271840 -84473058 + (TA)n Simple_repeat Simple_repeat 2 26 0 359 226 71 0 chr13 35271840 35271924 -84472974 - L1MC4 LINE L1 -1339 6703 6614 345 248 38 30 chr13 35272180 35272313 -84472585 - MER113 DNA MER1_type? -385 136 3 381 287 60 53 chr13 35273057 35273489 -84471409 + L1MEc LINE L1 1877 2311 -4085 325 361 40 83 chr13 35273729 35273970 -84470928 + L2 LINE L2 2962 3189 -83 1620 234 81 32 chr13 35273970 35274462 -84470436 - LTR40a LTR ERVL -1 518 3 325 361 40 83 chr13 35274462 35274522 -84470376 + L2 LINE L2 3189 3250 -22 21 0 0 0 chr13 35274534 35274555 -84470343 + AT_rich Low_complexity Low_complexity 1 21 0 4136 81 21 2 chr13 35275193 35275771 -84469127 + L1PA10 LINE L1 5575 6163 -5 912 175 78 53 chr13 35276169 35276375 -84468523 - AluJb SINE Alu -15 297 87 2584 96 6 3 chr13 35276589 35276943 -84467955 + HSMAR1 DNA Mariner 931 1285 -2 4460 119 53 24 chr13 35277596 35278383 -84466515 - L1MA5 LINE L1 0 6300 5491 576 244 0 16 chr13 35278453 35278595 -84466303 + FLAM_A SINE Alu 3 133 0 180 0 0 0 chr13 35278938 35278958 -84465940 + (TG)n Simple_repeat Simple_repeat 2 21 0 25 51 0 0 chr13 35278958 35278997 -84465901 + AT_rich Low_complexity Low_complexity 1 39 0 252 186 29 43 chr13 35279021 35279091 -84465807 + MIR SINE MIR 194 262 0 339 319 67 14 chr13 35279296 35279506 -84465392 - HAL1 LINE L1 -746 1761 1541 694 224 29 17 chr13 35279653 35279827 -84465071 + MIR SINE MIR 3 178 -84 780 132 0 8 chr13 35280215 35280344 -84464554 + L1MA3 LINE L1 6173 6300 -5 7352 93 12 18 chr13 35280470 35281533 -84463365 + MER11C LTR ERVK 1 1057 -14 21 0 0 0 chr13 35282465 35282486 -84462412 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr13 35282767 35282792 -84462106 + (CA)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr13 35283278 35283315 -84461583 + AT_rich Low_complexity Low_complexity 1 37 0 229 267 56 78 chr13 35283434 35283524 -84461374 + MIR SINE MIR 31 118 -90 593 129 65 0 chr13 35283706 35283799 -84461099 + LTR54 LTR ERV1 1 99 -411 439 275 170 10 chr13 35283802 35284039 -84460859 + MER57A LTR ERV1 108 351 -52 1560 125 129 22 chr13 35284109 35284381 -84460517 - AluSg1 SINE Alu -8 301 1 2264 125 0 0 chr13 35285325 35285636 -84459262 - AluSx SINE Alu -1 311 1 298 342 54 92 chr13 35286065 35286544 -84458354 - L2 LINE L2 0 3272 2812 2294 83 0 35 chr13 35286569 35286881 -84458017 + AluY SINE Alu 1 301 -10 1544 133 0 4 chr13 35287064 35287289 -84457609 + AluSg/x SINE Alu 69 292 -20 207 0 0 0 chr13 35287289 35287312 -84457586 + (TA)n Simple_repeat Simple_repeat 1 23 0 453 116 0 0 chr13 35287312 35287381 -84457517 + (CA)n Simple_repeat Simple_repeat 2 70 0 21 0 0 0 chr13 35287399 35287420 -84457478 + AT_rich Low_complexity Low_complexity 1 21 0 417 291 107 46 chr13 35287451 35287908 -84456990 + L1MDa LINE L1 1692 2176 -4364 2169 133 128 8 chr13 35287912 35288294 -84456604 + MSTA LTR MaLR 1 428 0 8325 188 38 7 chr13 35288294 35289896 -84455002 + MSTA-int LTR MaLR 1 1651 0 1766 160 81 64 chr13 35289896 35290315 -84454583 + MSTA LTR MaLR 1 426 -2 14251 129 66 33 chr13 35290374 35291310 -84453588 - Tigger2 DNA MER2_type 0 2718 1814 1921 133 3 17 chr13 35291310 35291611 -84453287 - AluJo SINE Alu -11 301 5 14251 129 66 33 chr13 35291611 35292572 -84452326 - Tigger2 DNA MER2_type -904 1814 886 2029 124 21 0 chr13 35292572 35292863 -84452035 - AluSx SINE Alu -15 297 1 14251 129 66 33 chr13 35292863 35293250 -84451648 - Tigger2 DNA MER2_type -1832 886 513 2306 86 17 0 chr13 35293250 35293540 -84451358 - AluSq SINE Alu -18 295 1 14251 129 66 33 chr13 35293540 35293882 -84451016 - Tigger2 DNA MER2_type -2205 513 3 347 285 161 0 chr13 35294113 35294250 -84450648 + MIR SINE MIR 77 235 -27 2381 88 0 3 chr13 35294267 35294573 -84450325 + AluSq SINE Alu 1 305 -8 238 268 106 73 chr13 35295033 35295117 -84449781 - L2 LINE L2 -1 3312 3221 2346 82 7 0 chr13 35295117 35295411 -84449487 - AluSp SINE Alu -16 297 2 238 268 106 73 chr13 35295411 35295449 -84449449 - L2 LINE L2 -92 3221 3186 520 256 298 5 chr13 35295588 35295779 -84449119 + MIR SINE MIR 5 251 -11 24 0 0 0 chr13 35295904 35295928 -84448970 + AT_rich Low_complexity Low_complexity 1 24 0 625 192 0 0 chr13 35295932 35296036 -84448862 - FRAM SINE Alu -32 144 41 1815 150 10 23 chr13 35297188 35297495 -84447403 - AluJb SINE Alu -9 303 1 202 250 0 0 chr13 35297699 35297735 -84447163 - MIR SINE MIR -112 150 115 1922 127 10 7 chr13 35298403 35298695 -84446203 - AluSq SINE Alu -20 293 1 768 185 0 7 chr13 35300707 35300842 -84444056 - AluJb SINE Alu -23 289 156 332 167 306 9 chr13 35300843 35300951 -84443947 - HAL1 LINE L1 -1280 1227 1088 898 174 27 0 chr13 35300951 35301100 -84443798 - AluJb SINE Alu -159 153 1 999 282 175 18 chr13 35301711 35302364 -84442534 + HAL1 LINE L1 578 1332 -1175 * 3080 150 34 14 chr13 35302346 35303258 -84441640 + L1MA7 LINE L1 4890 5813 -478 786 71 0 18 chr13 35303259 35303372 -84441526 + LTR17 LTR ERV1 256 366 -414 12849 51 1 10 chr13 35303372 35304953 -84439945 + HERV17 LTR ERV1 5582 7147 -1479 308 0 0 0 chr13 35304949 35304985 -84439913 + HERV17 LTR ERV1 7510 7545 -1081 * 2248 60 28 0 chr13 35304978 35305262 -84439636 + HERV17 LTR ERV1 8335 8626 0 2436 76 0 9 chr13 35305262 35305591 -84439307 + LTR17 LTR ERV1 1 326 -454 21 0 0 0 chr13 35305594 35305615 -84439283 + AT_rich Low_complexity Low_complexity 1 21 0 2347 134 74 42 chr13 35305615 35306086 -84438812 + L1MA7 LINE L1 5796 6281 -10 1375 249 218 32 chr13 35306092 35307084 -84437814 + HAL1 LINE L1 1332 2507 0 964 155 7 7 chr13 35307138 35307286 -84437612 - AluJo/FRAM SINE Alu -18 284 137 1351 184 0 13 chr13 35307326 35307554 -84437344 - AluSq SINE Alu -88 225 1 1216 204 113 31 chr13 35307625 35307743 -84437155 - MER2 DNA MER2_type -1 344 237 1657 157 51 3 chr13 35307743 35308036 -84436862 + AluJb SINE Alu 1 307 -5 1216 204 113 31 chr13 35308036 35308235 -84436663 - MER2 DNA MER2_type -108 237 1 25 31 0 0 chr13 35308314 35308346 -84436552 + AT_rich Low_complexity Low_complexity 1 32 0 2289 92 0 20 chr13 35308402 35308697 -84436201 - AluSx SINE Alu -23 289 1 650 191 9 9 chr13 35309124 35309239 -84435659 - AluJb SINE Alu -196 116 2 1074 163 153 42 chr13 35309361 35309561 -84435337 + MER33 DNA MER1_type 5 248 -2337 1510 159 28 42 chr13 35309561 35309850 -84435048 - AluJo SINE Alu -17 295 11 1074 163 153 42 chr13 35309850 35309937 -84434961 + MER33 DNA MER1_type 248 324 0 414 302 56 73 chr13 35310502 35310790 -84434108 - L2 LINE L2 0 3313 3031 216 265 204 8 chr13 35310972 35311104 -84433794 - L2 LINE L2 -710 2604 2447 400 306 82 39 chr13 35311145 35311265 -84433633 - L2 LINE L2 -1311 2003 1890 2059 97 68 0 chr13 35311265 35311544 -84433354 + AluSq SINE Alu 1 298 -15 400 306 82 39 chr13 35311544 35311704 -84433194 - L2 LINE L2 -1424 1890 1711 898 205 0 0 chr13 35313128 35313284 -84431614 - FRAM SINE Alu -21 155 1 2282 119 0 0 chr13 35313550 35313860 -84431038 + AluSx SINE Alu 1 310 -2 644 238 79 46 chr13 35313860 35314082 -84430816 + MIR SINE MIR 15 252 -10 24 0 0 0 chr13 35316017 35316041 -84428857 + AT_rich Low_complexity Low_complexity 1 24 0 242 28 0 28 chr13 35316122 35316158 -84428740 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2167 99 0 3 chr13 35316161 35316444 -84428454 - AluSx SINE Alu -30 282 1 222 152 30 30 chr13 35316642 35316708 -84428190 + (TA)n Simple_repeat Simple_repeat 1 66 0 2102 99 42 0 chr13 35316941 35317224 -84427674 + AluSg SINE Alu 1 295 -15 2236 108 10 0 chr13 35317238 35317543 -84427355 + AluSx SINE Alu 1 308 -4 2087 118 7 13 chr13 35317971 35318277 -84426621 + AluSx SINE Alu 1 304 -8 21 57 0 0 chr13 35318671 35318706 -84426192 + AT_rich Low_complexity Low_complexity 1 35 0 673 282 102 98 chr13 35318963 35319317 -84425581 + L1MC4a LINE L1 4204 4555 -1591 2471 67 0 0 chr13 35319317 35319616 -84425282 + AluY SINE Alu 1 299 -12 673 282 102 98 chr13 35319616 35320338 -84424560 + L1MC4a LINE L1 4555 5284 -862 290 248 71 28 chr13 35320342 35320483 -84424415 + L1MC4a LINE L1 5287 5433 -2375 595 229 264 14 chr13 35320524 35320812 -84424086 + L1MC4a LINE L1 5574 5933 -1875 227 252 30 82 chr13 35320964 35321099 -84423799 - L1ME4a LINE L1 -28 6093 5966 1436 200 144 71 chr13 35321213 35321535 -84423363 - L1MC5 LINE L1 -54 7907 7610 2036 127 0 7 chr13 35321535 35321826 -84423072 + AluSc SINE Alu 1 289 -20 1436 200 144 71 chr13 35321826 35322098 -84422800 - L1MC5 LINE L1 -351 7610 7269 354 291 124 8 chr13 35322125 35322359 -84422539 - L1ME4a LINE L1 -303 5818 5558 402 140 0 2 chr13 35322364 35322601 -84422297 + AluJo SINE Alu 22 305 -7 24 0 0 0 chr13 35322678 35322702 -84422196 + AT_rich Low_complexity Low_complexity 1 24 0 2246 123 10 0 chr13 35322751 35323060 -84421838 + AluSx SINE Alu 1 312 0 2218 115 0 0 chr13 35323070 35323366 -84421532 + AluSx SINE Alu 1 296 -16 669 196 155 20 chr13 35323969 35324117 -84420781 + AluJb SINE Alu 131 298 -14 2152 127 7 0 chr13 35324119 35324418 -84420480 + AluSx SINE Alu 6 306 -6 2149 104 7 3 chr13 35324496 35324784 -84420114 - AluSg SINE Alu -15 295 7 2145 142 0 0 chr13 35324791 35325093 -84419805 - AluSx SINE Alu -10 302 1 245 272 88 44 chr13 35325724 35325838 -84419060 + MIR3 SINE MIR 71 189 -19 295 338 96 15 chr13 35326544 35326680 -84418218 - L2 LINE L2 0 3272 3126 268 227 46 151 chr13 35326812 35327050 -84417848 + MER102a DNA MER1_type 108 320 -10 196 402 0 0 chr13 35327089 35327171 -84417727 - L2 LINE L2 -644 2670 2589 378 184 0 0 chr13 35327657 35327733 -84417165 + (TG)n Simple_repeat Simple_repeat 2 77 0 247 319 22 11 chr13 35328043 35328134 -84416764 - MIR SINE MIR -158 104 13 254 244 23 58 chr13 35328297 35328383 -84416515 + L2 LINE L2 3146 3228 -44 897 195 83 10 chr13 35329753 35329954 -84414944 + MIR SINE MIR 41 257 -5 2221 108 10 0 chr13 35329974 35330271 -84414627 + AluSp SINE Alu 1 300 -13 511 201 117 7 chr13 35330297 35330451 -84414447 - LTR50 LTR ERVL -602 193 23 180 293 40 61 chr13 35330492 35330591 -84414307 + MIR SINE MIR 116 212 -50 617 242 13 19 chr13 35331964 35332121 -84412777 + MER3 DNA MER1_type 1 156 -53 3027 218 37 48 chr13 35332121 35332389 -84412509 - L1ME1 LINE L1 -24 6142 5873 2223 85 3 0 chr13 35332389 35332699 -84412199 - AluSp SINE Alu 0 311 1 3027 218 37 48 chr13 35332699 35333806 -84411092 - L1ME1 LINE L1 -293 5873 4777 2184 96 0 0 chr13 35333806 35334115 -84410783 - AluSx SINE Alu 0 318 10 3027 218 37 48 chr13 35334115 35334177 -84410721 - L1ME1 LINE L1 -1389 4777 4716 237 146 0 0 chr13 35334277 35334318 -84410580 + L1MB3 LINE L1 6143 6183 0 296 268 8 73 chr13 35334424 35334547 -84410351 + MIR3 SINE MIR 62 176 -32 1952 150 3 0 chr13 35334556 35334850 -84410048 + AluSq SINE Alu 1 295 -18 180 0 0 0 chr13 35334853 35334873 -84410025 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 367 321 28 0 chr13 35334886 35334995 -84409903 + MER81 DNA DNA 3 114 0 454 247 62 28 chr13 35335073 35335268 -84409630 - MIR SINE MIR -6 256 4 274 183 67 0 chr13 35335281 35335341 -84409557 - MIR SINE MIR -13 249 186 2428 60 0 29 chr13 35335343 35335659 -84409239 - AluY SINE Alu -4 307 1 420 211 106 10 chr13 35335789 35335893 -84409005 - MER81 DNA DNA 0 114 1 387 0 0 0 chr13 35336061 35336104 -84408794 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1140 152 16 0 chr13 35336544 35336735 -84408163 + AluSg/x SINE Alu 115 308 -2 318 296 83 35 chr13 35336735 35336904 -84407994 - L2 LINE L2 -1211 2103 1927 240 130 0 0 chr13 35336938 35336984 -84407914 + (TG)n Simple_repeat Simple_repeat 1 46 0 1892 160 10 0 chr13 35337360 35337653 -84407245 + AluJo SINE Alu 2 297 -15 1989 124 0 0 chr13 35338978 35339268 -84405630 + L1P5 LINE L1 5517 5806 -348 635 281 112 10 chr13 35339552 35339918 -84404980 + L1ME3 LINE L1 5217 5630 -540 314 222 122 0 chr13 35339919 35340009 -84404889 + MER5A DNA MER1_type 9 109 -80 517 231 22 45 chr13 35340067 35340201 -84404697 + MER5B DNA MER1_type 44 174 -4 487 214 29 103 chr13 35340244 35340298 -84404600 + L1ME3 LINE L1 5717 5773 -389 1713 159 7 13 chr13 35340298 35340600 -84404298 + AluJb SINE Alu 1 300 -12 487 214 29 103 chr13 35340600 35340729 -84404169 + L1ME3 LINE L1 5773 5880 -282 2160 104 7 0 chr13 35340729 35341026 -84403872 + AluSg SINE Alu 1 299 -11 487 214 29 103 chr13 35341026 35341084 -84403814 + L1ME3 LINE L1 5880 5941 -221 231 160 67 27 chr13 35341098 35341173 -84403725 - L1MCa LINE L1 -4363 2063 1986 323 165 12 106 chr13 35341629 35341714 -84403184 + LTR67 LTR ERVL 477 553 -4 1925 156 3 0 chr13 35343017 35343318 -84401580 - AluJo SINE Alu -10 302 1 379 236 11 11 chr13 35344899 35344988 -84399910 - L2 LINE L2 -1 3312 3224 249 270 43 37 chr13 35345151 35345314 -84399584 + L2 LINE L2 878 1041 -2273 1293 281 155 35 chr13 35345315 35345941 -84398957 + Charlie2a DNA MER1_type 1 701 -2161 2753 151 61 30 chr13 35345944 35346486 -84398412 - L1MC3 LINE L1 0 7785 7227 1435 259 65 79 chr13 35346486 35346895 -84398003 + Charlie2a DNA MER1_type 666 1079 -1783 842 37 148 0 chr13 35346895 35347003 -84397895 + L1PA13 LINE L1 6036 6159 -4 1435 259 65 79 chr13 35347003 35347594 -84397304 + Charlie2a DNA MER1_type 1079 1652 -1210 2038 138 3 0 chr13 35347594 35347884 -84397014 + AluSp SINE Alu 1 291 -22 1344 213 32 23 chr13 35347893 35348203 -84396695 + L1MDa LINE L1 86 398 -6142 319 259 49 3 chr13 35348304 35348459 -84396439 - L2 LINE L2 -243 3070 2873 2139 307 137 28 chr13 35348738 35350056 -84394842 - L2 LINE L2 -658 2656 1196 203 197 30 45 chr13 35350489 35350555 -84394343 + (CAGA)n Simple_repeat Simple_repeat 4 68 0 375 254 149 29 chr13 35351476 35351668 -84393230 + MIR SINE MIR 32 249 -13 301 277 11 53 chr13 35351839 35351933 -84392965 + MIR SINE MIR 60 149 -59 191 184 102 0 chr13 35351957 35352006 -84392892 + MIR3 SINE MIR 132 185 -23 416 262 200 7 chr13 35352983 35353273 -84391625 - L1ME LINE L1 -567 5603 5258 638 279 76 18 chr13 35353306 35353582 -84391316 - MLT1J LTR MaLR -151 360 69 195 267 198 0 chr13 35353589 35353675 -84391223 + L3 LINE CR1 1154 1256 -321 261 309 12 36 chr13 35354419 35354503 -84390395 - L2 LINE L2 -15 3257 3176 560 121 0 0 chr13 35354960 35355043 -84389855 + AluJ/FRAM SINE Alu 230 312 0 346 215 0 38 chr13 35355059 35355138 -84389760 + FLAM_A SINE Alu 41 116 -17 2207 119 0 0 chr13 35355204 35355507 -84389391 - AluSx SINE Alu -9 303 1 602 184 128 28 chr13 35355567 35355708 -84389190 - L2 LINE L2 0 3313 3159 599 268 193 5 chr13 35355830 35356043 -84388855 + MIR SINE MIR 9 261 -1 425 132 88 0 chr13 35357014 35357082 -84387816 + MER5A DNA MER1_type 2 75 -114 1236 161 72 14 chr13 35357084 35357124 -84387774 + AluJb SINE Alu 1 37 -275 4017 139 6 35 chr13 35357124 35357778 -84387120 - MER41B LTR ERV1 0 635 1 1236 161 72 14 chr13 35357778 35357960 -84386938 + AluJb SINE Alu 37 236 -76 213 254 0 34 chr13 35358805 35358864 -84386034 + L2 LINE L2 1761 1817 -1497 342 286 17 50 chr13 35358886 35358953 -84385945 + MER5B DNA MER1_type 1 64 -114 2097 143 140 29 chr13 35358953 35359338 -84385560 + MSTA LTR MaLR 1 428 0 342 286 17 50 chr13 35359338 35359389 -84385509 + MER5B DNA MER1_type 64 115 -63 1645 176 0 21 chr13 35359495 35359785 -84385113 - AluJo SINE Alu -24 288 5 3343 153 24 43 chr13 35360361 35360887 -84384011 + MER41B LTR ERV1 1 342 -136 2316 84 3 34 chr13 35360887 35361210 -84383688 - AluSp SINE Alu 0 313 1 3343 153 24 43 chr13 35361210 35361333 -84383565 + MER41B LTR ERV1 342 466 -12 801 223 0 48 chr13 35361362 35361550 -84383348 - LTR16A LTR ERVL -13 437 259 227 323 46 0 chr13 35361588 35361653 -84383245 - MIR SINE MIR -174 88 21 576 209 26 89 chr13 35361691 35361725 -84383173 + MER106A DNA MER1_type 15 50 -186 1795 166 0 17 chr13 35361725 35362026 -84382872 - AluJo SINE Alu -15 297 2 576 209 26 89 chr13 35362026 35362182 -84382716 + MER106A DNA MER1_type 50 193 -43 2240 66 7 0 chr13 35362190 35362464 -84382434 + AluSp SINE Alu 1 276 -37 333 0 0 0 chr13 35363014 35363051 -84381847 + (CA)n Simple_repeat Simple_repeat 2 38 0 1234 215 52 17 chr13 35363082 35363370 -84381528 + AluJb SINE Alu 1 298 -14 340 333 74 19 chr13 35363966 35364128 -84380770 + L2 LINE L2 3077 3247 -25 342 291 66 44 chr13 35364544 35364726 -84380172 + L3b LINE CR1 1181 1366 -217 388 228 13 0 chr13 35364787 35364866 -84380032 + MER5A DNA MER1_type 32 111 -78 1298 197 55 39 chr13 35365059 35365389 -84379509 - MLT1B LTR MaLR -41 349 15 226 179 60 48 chr13 35367220 35367304 -84377594 + HSMAR1 DNA Mariner 1 85 -1202 502 238 74 8 chr13 35367636 35367758 -84377140 - L2 LINE L2 -2 3311 3182 205 377 26 13 chr13 35367926 35368080 -84376818 - L2 LINE L2 -231 3041 2886 1272 183 4 29 chr13 35368674 35368915 -84375983 + L1MB5 LINE L1 5932 6166 -8 754 239 68 108 chr13 35368918 35368950 -84375948 + L2 LINE L2 2695 2727 -586 369 0 0 0 chr13 35368950 35368991 -84375907 + (TG)n Simple_repeat Simple_repeat 2 42 0 754 239 68 108 chr13 35368991 35369342 -84375556 + L2 LINE L2 2727 3049 -264 2278 103 3 10 chr13 35369342 35369644 -84375254 - AluSg SINE Alu -10 300 1 754 239 68 108 chr13 35369644 35369734 -84375164 + L2 LINE L2 3049 3141 -172 441 0 0 0 chr13 35369751 35369800 -84375098 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 35 0 0 chr13 35369806 35369835 -84375063 + AT_rich Low_complexity Low_complexity 1 29 0 1503 184 0 22 chr13 35369835 35370107 -84374791 - L1MB5 LINE L1 -8 6166 5901 1780 188 9 21 chr13 35370145 35370485 -84374413 - L1MB5 LINE L1 -416 5758 5423 2423 70 6 16 chr13 35370486 35370800 -84374098 - AluSp SINE Alu -2 311 1 2448 93 39 25 chr13 35370800 35371156 -84373742 - MER41A LTR ERV1 -183 371 11 417 258 45 8 chr13 35371336 35371468 -84373430 + L1ME4a LINE L1 5805 5941 -180 543 268 102 38 chr13 35372370 35372566 -84372332 + L1MC4 LINE L1 7791 8006 -36 1499 136 45 0 chr13 35372566 35372786 -84372112 + MER30 DNA MER1_type 1 230 0 543 268 102 38 chr13 35372786 35372824 -84372074 + L1MC4 LINE L1 8006 8040 -2 32 26 0 0 chr13 35372824 35372863 -84372035 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr13 35372925 35372946 -84371952 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr13 35373727 35373752 -84371146 + (TA)n Simple_repeat Simple_repeat 1 25 0 819 227 50 80 chr13 35374076 35374113 -84370785 - MER20B DNA MER1_type -492 291 254 2274 96 0 13 chr13 35374113 35374414 -84370484 - AluSq SINE Alu -16 297 1 819 227 50 80 chr13 35374414 35374676 -84370222 - MER20B DNA MER1_type -529 254 1 288 91 0 0 chr13 35375009 35375053 -84369845 + (TG)n Simple_repeat Simple_repeat 1 44 0 2043 111 19 16 chr13 35375383 35375690 -84369208 - AluSx SINE Alu -4 308 1 1808 181 78 22 chr13 35377211 35377582 -84367316 + MSTD LTR MaLR 5 396 0 2076 109 0 0 chr13 35377739 35378040 -84366858 - AluSq SINE Alu 0 310 10 287 257 9 46 chr13 35378804 35378880 -84366018 - L1MEc LINE L1 -1750 4465 4393 1850 142 42 0 chr13 35378880 35379168 -84365730 - AluJo SINE Alu -12 300 1 287 257 9 46 chr13 35379168 35379200 -84365698 - L1MEc LINE L1 -1822 4393 4361 3946 213 80 28 chr13 35379220 35380239 -84364659 - L1MEc LINE L1 -1905 4310 3217 2197 127 3 3 chr13 35380239 35380547 -84364351 - AluSx SINE Alu -4 308 1 3946 213 80 28 chr13 35380547 35380724 -84364174 - L1MEc LINE L1 -2998 3217 3051 950 280 129 58 chr13 35380753 35381289 -84363609 - MER21B LTR ERV1 -149 714 141 2865 237 41 26 chr13 35381438 35382630 -84362268 - L1MEc LINE L1 -3168 3047 1878 5061 254 44 59 chr13 35382650 35384558 -84360340 - L1MEc LINE L1 -4483 1913 35 371 198 86 0 chr13 35384559 35384640 -84360258 + MER3 DNA MER1_type 122 209 0 1778 120 0 4 chr13 35385089 35385369 -84359529 + AluSx SINE Alu 36 314 0 1171 248 85 44 chr13 35385754 35386165 -84358733 - L2 LINE L2 0 3313 2886 343 174 163 0 chr13 35386904 35386996 -84357902 + L2 LINE L2 3197 3303 -10 21 0 0 0 chr13 35387055 35387076 -84357822 + AT_rich Low_complexity Low_complexity 1 21 0 462 318 43 43 chr13 35387498 35387778 -84357120 + L2 LINE L2 2871 3150 -163 224 255 43 96 chr13 35388238 35388332 -84356566 - MIR SINE MIR -115 147 59 2088 125 0 0 chr13 35388749 35389038 -84355860 - AluSx SINE Alu -23 289 1 258 241 161 93 chr13 35390394 35390717 -84354181 - L1ME4a LINE L1 -160 5961 5617 35 0 0 0 chr13 35390799 35390834 -84354064 + AT_rich Low_complexity Low_complexity 1 35 0 423 254 71 24 chr13 35391748 35391874 -84353024 - FLAM_C SINE Alu -1 132 1 314 279 0 0 chr13 35393328 35393396 -84351502 + L2 LINE L2 3205 3272 0 408 251 18 114 chr13 35393520 35393687 -84351211 + L2 LINE L2 2941 3091 -181 2950 176 26 20 chr13 35393763 35394308 -84350590 + Tigger7 DNA MER2_type 29 576 -1911 833 137 25 50 chr13 35394399 35394560 -84350338 + Tigger7 DNA MER2_type 2331 2487 0 250 300 25 0 chr13 35394560 35394640 -84350258 + L2 LINE L2 3191 3272 0 2128 174 14 22 chr13 35394927 35395295 -84349603 - MLT1A1 LTR MaLR 0 365 1 192 77 0 0 chr13 35395808 35395834 -84349064 + (TG)n Simple_repeat Simple_repeat 2 27 0 279 0 42 42 chr13 35395933 35395981 -84348917 + (TTTTTG)n Simple_repeat Simple_repeat 6 53 0 343 278 119 11 chr13 35396028 35396219 -84348679 + MIR3 SINE MIR 26 241 -21 342 45 0 0 chr13 35396952 35396996 -84347902 + (TG)n Simple_repeat Simple_repeat 2 45 0 313 314 111 20 chr13 35397130 35397346 -84347552 + MIR SINE MIR 11 241 -21 677 258 18 53 chr13 35397457 35397682 -84347216 - MIR SINE MIR -29 233 17 228 108 15 62 chr13 35397727 35397792 -84347106 + (GAAA)n Simple_repeat Simple_repeat 4 65 0 273 79 0 0 chr13 35397820 35397858 -84347040 + AluY SINE Alu 45 82 -219 2870 225 62 27 chr13 35398612 35398714 -84346184 - L1ME1 LINE L1 -5 6161 6064 1716 218 88 6 chr13 35398714 35399076 -84345822 - MSTD LTR MaLR 0 396 5 2870 225 62 27 chr13 35399076 35400142 -84344756 - L1ME1 LINE L1 -102 6064 4963 2170 249 72 11 chr13 35400144 35400670 -84344228 - MLT1F1 LTR MaLR -8 559 2 383 212 24 12 chr13 35400671 35400756 -84344142 - L1ME1 LINE L1 -1177 4969 4884 274 333 59 20 chr13 35401348 35401450 -84343448 - L2 LINE L2 -14 3258 3153 503 279 20 7 chr13 35401789 35401936 -84342962 - MLT1F1 LTR MaLR -108 459 311 752 265 131 64 chr13 35402701 35403188 -84341710 - LTR67 LTR ERVL -9 548 29 543 266 76 19 chr13 35403348 35403506 -84341392 + MER5B DNA MER1_type 3 169 -9 1972 182 8 32 chr13 35404147 35404521 -84340377 - MLT1A1 LTR MaLR 0 365 1 756 230 19 0 chr13 35405409 35405570 -84339328 + L1PB4 LINE L1 5993 6156 0 207 204 0 0 chr13 35405755 35405799 -84339099 + (TG)n Simple_repeat Simple_repeat 2 45 0 276 286 36 0 chr13 35406052 35406136 -84338762 + MER5A DNA MER1_type 14 100 -89 397 270 58 29 chr13 35406190 35406327 -84338571 - MER5A DNA MER1_type -28 161 21 1262 122 33 0 chr13 35407176 35407356 -84337542 - MER5A DNA MER1_type -3 186 1 687 316 53 23 chr13 35407378 35407679 -84337219 + LTR16A LTR ERVL 22 331 -119 477 331 31 16 chr13 35408243 35408497 -84336401 - L2 LINE L2 -467 2847 2590 688 271 41 14 chr13 35408516 35408737 -84336161 + MIR SINE MIR 18 244 -18 2219 195 57 13 chr13 35410083 35410611 -84334287 - MER89 LTR ERV1 -5 554 4 263 273 16 91 chr13 35410786 35410907 -84333991 + MIR SINE MIR 128 239 -23 3996 146 20 14 chr13 35411146 35411879 -84333019 - L1MA8 LINE L1 -11 6280 5543 486 291 81 44 chr13 35414545 35414975 -84329923 + HAL1b LINE L1 70 515 -833 2757 267 49 43 chr13 35414985 35416160 -84328738 - L1MEc LINE L1 -4947 1449 263 1901 125 52 35 chr13 35416160 35416529 -84328369 + THE1C LTR MaLR 1 375 0 2757 267 49 43 chr13 35416529 35416714 -84328184 - L1MEc LINE L1 -6133 263 81 1257 228 138 50 chr13 35416756 35417480 -84327418 + HAL1b LINE L1 511 1298 -50 524 322 40 10 chr13 35417499 35417698 -84327200 - L2 LINE L2 -2 3311 3107 1511 243 14 22 chr13 35417698 35418192 -84326706 - L1M4 LINE L1 -1169 4977 4488 27 29 0 0 chr13 35418308 35418342 -84326556 + AT_rich Low_complexity Low_complexity 1 34 0 542 308 32 11 chr13 35418374 35418559 -84326339 - MER5A DNA MER1_type 0 189 1 425 351 49 0 chr13 35419221 35419406 -84325492 + MIR SINE MIR 1 194 -68 272 108 0 0 chr13 35421129 35421191 -84323707 + Alu SINE Alu 246 307 0 618 296 48 5 chr13 35423106 35423312 -84321586 - MIR SINE MIR -1 261 47 488 278 48 32 chr13 35425786 35425973 -84318925 + MIR SINE MIR 73 262 0 437 230 56 32 chr13 35426969 35427095 -84317803 - L2 LINE L2 -1 3312 3184 552 265 158 43 chr13 35427155 35427389 -84317509 + MIR SINE MIR 1 261 -1 252 0 0 0 chr13 35427582 35427610 -84317288 + (A)n Simple_repeat Simple_repeat 1 28 0 423 311 47 14 chr13 35428225 35428373 -84316525 - MIR3 SINE MIR -9 199 47 209 383 25 0 chr13 35428887 35428968 -84315930 + L2 LINE L2 3116 3198 -74 967 254 14 161 chr13 35428991 35429644 -84315254 - L2 LINE L2 -1791 1523 967 205 244 0 0 chr13 35430675 35430716 -84314182 + CT-rich Low_complexity Low_complexity 3 43 0 5049 121 5 16 chr13 35430858 35431508 -84313390 - L1PA16 LINE L1 -6 6160 5519 1617 208 14 14 chr13 35431508 35431802 -84313096 - AluJb SINE Alu -18 294 1 5049 121 5 16 chr13 35431802 35431987 -84312911 - L1PA16 LINE L1 -647 5519 5334 254 283 35 26 chr13 35431988 35432101 -84312797 + MIR SINE MIR 148 261 -1 1220 137 64 4 chr13 35433657 35433906 -84310992 + L1MA4 LINE L1 6031 6294 -6 1716 140 7 57 chr13 35433926 35434226 -84310672 + AluJb SINE Alu 9 293 -19 753 203 0 0 chr13 35434228 35434361 -84310537 + FLAM_C SINE Alu 1 133 0 3159 213 37 22 chr13 35434380 35435213 -84309685 - L1ME1 LINE L1 -24 6142 5297 299 241 0 37 chr13 35435299 35435407 -84309491 - L1ME1 LINE L1 -868 5278 5175 1042 172 0 0 chr13 35435423 35435586 -84309312 - AluJ SINE Alu -15 297 135 286 310 8 70 chr13 35435587 35435716 -84309182 - MIR3 SINE MIR -6 202 82 216 333 93 19 chr13 35436961 35437069 -84307829 - L2 LINE L2 -36 3236 3121 402 214 31 0 chr13 35437469 35437567 -84307331 - L1PA10 LINE L1 -105 6063 5963 1078 273 125 30 chr13 35437567 35438102 -84306796 - Charlie2 DNA MER1_type -2152 630 45 199 376 69 0 chr13 35438118 35438219 -84306679 - L3 LINE CR1 -72 1505 1398 2180 121 0 13 chr13 35438481 35438796 -84306102 - AluY SINE Alu 0 311 1 757 176 23 0 chr13 35438797 35438928 -84305970 - AluJ SINE Alu -168 144 11 483 310 60 25 chr13 35439127 35439411 -84305487 + MLT1I LTR MaLR 108 401 -8 324 329 12 33 chr13 35439419 35439601 -84305297 + L2 LINE L2 2799 2980 -333 263 242 93 46 chr13 35439736 35439863 -84305035 + L1ME1 LINE L1 929 1070 -5326 2153 116 3 7 chr13 35439863 35440157 -84304741 + AluSx SINE Alu 1 293 -19 263 242 93 46 chr13 35440157 35440223 -84304675 + L1ME1 LINE L1 1070 1131 -5265 * 3950 244 65 47 chr13 35440210 35441946 -84302952 + L1ME1 LINE L1 2642 4407 -1808 2234 147 38 20 chr13 35441945 35442378 -84302520 - L1M2 LINE L1 -698 5593 5169 * 207 0 0 0 chr13 35442378 35442401 -84302497 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2207 91 11 0 chr13 35442403 35442689 -84302209 - AluSp SINE Alu -24 289 1 2234 147 38 20 chr13 35442689 35442936 -84301962 - L1M2 LINE L1 -1122 5169 4895 2572 234 19 33 chr13 35442936 35443320 -84301578 + L1ME1 LINE L1 4956 5344 -891 2090 117 3 25 chr13 35443320 35443636 -84301262 - AluSx SINE Alu -3 309 1 2572 234 19 33 chr13 35443636 35444388 -84300510 + L1ME1 LINE L1 5344 6070 -165 379 307 18 9 chr13 35444406 35444520 -84300378 + L2 LINE L2 3197 3311 -2 357 215 234 6 chr13 35444544 35444702 -84300196 + MIR SINE MIR 7 200 -62 4957 198 38 33 chr13 35444737 35444932 -84299966 + L1MB5 LINE L1 3832 4025 -2149 1996 109 65 14 chr13 35444932 35445225 -84299673 + AluSx SINE Alu 1 308 -4 4957 198 38 33 chr13 35445225 35447350 -84297548 + L1MB5 LINE L1 4025 6168 -6 184 291 39 78 chr13 35448108 35448211 -84296687 + L2 LINE L2 3173 3271 -1 658 296 36 32 chr13 35449302 35449552 -84295346 + MIR SINE MIR 12 262 0 225 331 78 19 chr13 35450240 35450394 -84294504 + MIR SINE MIR 49 211 -51 1315 221 24 68 chr13 35451698 35452124 -84292774 - MLT2D LTR ERVL 0 414 8 2278 69 23 13 chr13 35453051 35453354 -84291544 - AluY SINE Alu -5 306 1 2771 211 44 32 chr13 35453371 35454099 -84290799 + L1ME1 LINE L1 5420 6156 -10 2937 233 59 11 chr13 35454121 35454920 -84289978 + L1ME3 LINE L1 5320 6156 -6 2085 146 0 0 chr13 35456132 35456427 -84288471 - AluSx SINE Alu -17 295 1 2112 279 126 13 chr13 35457166 35457883 -84287015 - L3 LINE CR1 -199 1378 581 2116 122 6 3 chr13 35457943 35458321 -84286577 + AluJo SINE Alu 1 379 0 252 317 83 28 chr13 35458431 35458576 -84286322 - L3 LINE CR1 -1080 497 345 1802 191 17 56 chr13 35458610 35459071 -84285827 + LTR47B LTR ERVL 1 443 0 516 280 74 4 chr13 35459090 35459261 -84285637 + MIR SINE MIR 28 206 -56 186 395 80 5 chr13 35459302 35459502 -84285396 - L3 LINE CR1 -1299 278 64 1771 248 68 20 chr13 35459924 35460670 -84284228 - HAL1b LINE L1 -498 850 69 315 0 0 0 chr13 35460977 35461012 -84283886 + (TG)n Simple_repeat Simple_repeat 2 36 0 1835 251 131 9 chr13 35462776 35463425 -84281473 + L2 LINE L2 1481 2208 -1106 2390 118 3 3 chr13 35463434 35463791 -84281107 - THE1B LTR MaLR -1 363 7 2423 277 117 28 chr13 35463993 35465404 -84279494 - HAL1 LINE L1 -698 1809 273 266 309 52 7 chr13 35465414 35465550 -84279348 - HAL1 LINE L1 -2353 154 13 207 0 0 0 chr13 35465687 35465710 -84279188 + (CA)n Simple_repeat Simple_repeat 1 23 0 351 286 76 65 chr13 35465803 35465870 -84279028 - L1M4 LINE L1 -1199 4947 4882 1651 160 22 60 chr13 35465870 35466188 -84278710 - AluJo SINE Alu -2 310 5 351 286 76 65 chr13 35466188 35466595 -84278303 - L1M4 LINE L1 -1264 4882 4468 319 205 13 0 chr13 35466597 35466675 -84278223 + MER116 DNA Mariner 2 80 0 314 275 68 36 chr13 35466886 35467359 -84277539 - L1MEd LINE L1 -2686 3854 3367 420 294 112 13 chr13 35467423 35467957 -84276941 - L1MEd LINE L1 -3290 3250 2664 631 220 3 0 chr13 35467973 35468117 -84276781 + MSTD LTR MaLR 2 148 -217 654 197 15 0 chr13 35468154 35468291 -84276607 + MSTD LTR MaLR 258 396 0 331 302 107 12 chr13 35468305 35468474 -84276424 - L1MEd LINE L1 -3919 2621 2437 307 329 88 52 chr13 35468445 35468760 -84276138 - L1MEd LINE L1 -1126 1775 1473 * 2218 120 7 0 chr13 35468760 35469060 -84275838 + AluSx SINE Alu 1 302 -10 307 329 88 52 chr13 35469060 35469330 -84275568 - L1MEd LINE L1 -1428 1473 1081 34 72 0 0 chr13 35469828 35469897 -84275001 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr13 35470182 35470203 -84274695 + AT_rich Low_complexity Low_complexity 1 21 0 2206 63 0 4 chr13 35470608 35470876 -84274022 - AluY SINE Alu -16 295 29 2498 227 71 65 chr13 35471243 35471586 -84273312 - L1MDa LINE L1 -2798 3742 3403 1691 174 6 32 chr13 35471586 35471902 -84272996 + AluJo SINE Alu 1 308 -4 2498 227 71 65 chr13 35471902 35472818 -84272080 - L1MDa LINE L1 -3137 3403 2483 1585 204 14 17 chr13 35472818 35473112 -84271786 - AluJo SINE Alu -19 293 1 2498 227 71 65 chr13 35473112 35473304 -84271594 - L1MDa LINE L1 -4057 2483 2294 677 168 27 27 chr13 35473350 35473499 -84271399 + L1ME LINE L1 5662 5810 -356 22 0 0 0 chr13 35473600 35473622 -84271276 + AT_rich Low_complexity Low_complexity 1 22 0 4113 156 19 56 chr13 35473974 35474576 -84270322 + MER54B LTR ERVL 1 567 -226 2045 144 36 30 chr13 35474576 35474938 -84269960 - THE1B LTR MaLR 0 364 1 4113 156 19 56 chr13 35474938 35475158 -84269740 + MER54B LTR ERVL 567 793 0 23 68 0 0 chr13 35475508 35475552 -84269346 + AT_rich Low_complexity Low_complexity 1 44 0 2240 166 27 64 chr13 35476193 35476606 -84268292 - MER74A LTR ERVL -26 532 142 1737 170 7 3 chr13 35476606 35476900 -84267998 + AluJo SINE Alu 11 305 -7 2240 166 27 64 chr13 35476900 35477034 -84267864 - MER74A LTR ERVL -416 142 5 4129 157 84 12 chr13 35478552 35479508 -84265390 + L1MA8 LINE L1 4643 5747 -544 2048 139 32 32 chr13 35479508 35479881 -84265017 - THE1C LTR MaLR -2 373 1 4129 157 84 12 chr13 35479881 35480362 -84264536 + L1MA8 LINE L1 5747 6192 -99 652 120 0 0 chr13 35480848 35480948 -84263950 - L1 LINE L1 -2160 3986 3887 754 253 6 0 chr13 35482532 35482702 -84262196 - MLT1D LTR MaLR -334 171 1 905 287 47 40 chr13 35483042 35483345 -84261553 + L1ME3A LINE L1 4995 5294 -876 1895 152 24 0 chr13 35483345 35483634 -84261264 - AluSx SINE Alu -16 296 1 905 287 47 40 chr13 35483634 35484159 -84260739 + L1ME3A LINE L1 5294 5828 -342 620 293 50 50 chr13 35485005 35485288 -84259610 - MLT1I LTR MaLR -18 391 109 242 209 0 0 chr13 35485559 35485602 -84259296 - MER5A DNA MER1_type -10 179 137 497 55 14 0 chr13 35485602 35485675 -84259223 + (TA)n Simple_repeat Simple_repeat 1 74 0 258 244 51 0 chr13 35485694 35485772 -84259126 - L1MC4 LINE L1 -1339 6703 6622 21 0 0 0 chr13 35486206 35486227 -84258671 + AT_rich Low_complexity Low_complexity 1 21 0 702 223 37 32 chr13 35486253 35486441 -84258457 - MER5A DNA MER1_type 0 189 1 199 282 113 14 chr13 35486680 35486751 -84258147 + L2 LINE L2 3235 3312 -1 3619 169 63 9 chr13 35487113 35487798 -84257100 - MER72 LTR ERV1 0 722 1 319 265 209 36 chr13 35488552 35488748 -84256150 - MIR SINE MIR -13 249 20 186 147 0 29 chr13 35489843 35489877 -84255021 + MER5C DNA MER1_type 33 65 -259 431 302 32 58 chr13 35489971 35490160 -84254738 + MIR SINE MIR 71 254 -8 8981 107 13 1 chr13 35491957 35493228 -84251670 - HSMAR1 DNA Mariner 0 1287 1 421 211 78 47 chr13 35493313 35493441 -84251457 - MIR SINE MIR -98 164 33 234 244 9 96 chr13 35493604 35493662 -84251236 + MER103 DNA DNA 3 48 -118 2097 116 0 30 chr13 35493662 35493965 -84250933 + AluSx SINE Alu 1 294 -18 234 244 9 96 chr13 35493965 35494021 -84250877 + MER103 DNA DNA 48 107 -59 2206 115 48 28 chr13 35494069 35494426 -84250472 + THE1B LTR MaLR 1 364 0 862 141 96 15 chr13 35495177 35495376 -84249522 - L1MC3 LINE L1 0 7785 7571 2006 96 4 8 chr13 35495640 35495901 -84248997 + AluY SINE Alu 1 260 -51 408 107 40 0 chr13 35495904 35495979 -84248919 - LTR54B LTR ERV1 -21 477 400 2018 156 125 13 chr13 35496039 35496424 -84248474 + MSTA LTR MaLR 1 428 0 239 140 20 0 chr13 35496429 35496479 -84248419 + CT-rich Low_complexity Low_complexity 2 52 0 1664 184 20 50 chr13 35497277 35497679 -84247219 - L1ME1 LINE L1 -333 5833 5444 474 146 85 12 chr13 35497925 35498007 -84246891 + AluJ/FLAM SINE Alu 3 90 -222 28 29 0 0 chr13 35498019 35498054 -84246844 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 35498092 35498115 -84246783 + AT_rich Low_complexity Low_complexity 1 23 0 214 337 20 20 chr13 35499254 35499352 -84245546 - MER5B DNA MER1_type -80 98 1 718 246 58 45 chr13 35499685 35499882 -84245016 - MIR SINE MIR -27 235 33 2339 92 0 0 chr13 35499882 35500177 -84244721 - AluSq SINE Alu -18 295 1 718 246 58 45 chr13 35500177 35500203 -84244695 - MIR SINE MIR -229 33 9 2211 121 21 9 chr13 35500370 35500709 -84244189 + MER61A LTR ERV1 1 343 0 654 176 183 20 chr13 35501346 35501499 -84243399 - MER5B DNA MER1_type 0 178 1 216 0 0 0 chr13 35501859 35501883 -84243015 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2027 102 11 4 chr13 35501885 35502160 -84242738 - AluSc SINE Alu -32 277 1 617 231 81 6 chr13 35502423 35502583 -84242315 + MIR SINE MIR 85 256 -6 243 401 38 38 chr13 35502796 35502928 -84241970 + L2 LINE L2 3121 3252 -20 4079 87 7 0 chr13 35503017 35503567 -84241331 + MER41A LTR ERV1 1 554 0 1048 153 16 26 chr13 35503980 35504169 -84240729 + MER5A DNA MER1_type 1 187 -2 270 257 66 93 chr13 35504257 35504413 -84240485 - MIR SINE MIR -28 180 37 708 177 8 0 chr13 35505270 35505394 -84239504 + MER5B DNA MER1_type 4 128 -50 348 203 53 88 chr13 35505394 35505673 -84239225 - MER34 LTR ERV1 -15 751 435 425 123 0 0 chr13 35505827 35505892 -84239006 - MER34C LTR ERV1 -484 101 37 1289 169 14 1 chr13 35505985 35506237 -84238661 - MER39 LTR ERV1 -55 640 385 244 190 114 51 chr13 35506281 35506360 -84238538 - LTR48B LTR ERV1 -560 84 1 1886 243 151 61 chr13 35506506 35507904 -84236994 + HAL1 LINE L1 94 1617 -890 2044 84 40 7 chr13 35507913 35508247 -84236651 + AluY SINE Alu 1 343 0 233 288 0 0 chr13 35508366 35508425 -84236473 + CT-rich Low_complexity Low_complexity 3 61 0 404 211 23 23 chr13 35508433 35508604 -84236294 + T-rich Low_complexity Low_complexity 3 173 0 33 56 0 0 chr13 35508647 35508701 -84236197 + AT_rich Low_complexity Low_complexity 1 54 0 1818 123 98 11 chr13 35508715 35508991 -84235907 - AluJo SINE Alu -12 300 1 347 263 63 86 chr13 35509011 35509186 -84235712 + HAL1 LINE L1 1673 1843 -664 614 196 60 114 chr13 35509236 35509588 -84235310 + HAL1 LINE L1 2169 2501 -6 393 340 181 16 chr13 35509714 35510510 -84234388 - L2 LINE L2 -181 3091 2128 1409 165 15 105 chr13 35510514 35510915 -84233983 + MLT1A1 LTR MaLR 1 365 0 190 318 56 37 chr13 35512072 35512179 -84232719 + MIR SINE MIR 84 192 -70 309 272 158 6 chr13 35512518 35512676 -84232222 - LTR33 LTR ERVL 0 521 340 2739 109 46 5 chr13 35512823 35513234 -84231664 - MSTA LTR MaLR 0 428 1 7188 163 121 8 chr13 35513234 35514653 -84230245 - MSTA-int LTR MaLR 0 1580 3 2289 130 50 38 chr13 35514655 35514722 -84230176 - MSTA LTR MaLR 0 428 363 2176 120 10 0 chr13 35514722 35515030 -84229868 + AluSx SINE Alu 1 311 -1 2289 130 50 38 chr13 35515030 35515385 -84229513 - MSTA LTR MaLR -65 363 1 1772 105 22 99 chr13 35515431 35515780 -84229118 - AluYb8 SINE Alu 0 325 1 401 200 73 113 chr13 35516098 35516248 -84228650 - LTR33 LTR ERVL -345 176 33 2343 68 3 65 chr13 35517078 35517402 -84227496 - AluSp SINE Alu -9 304 1 427 246 136 45 chr13 35518578 35518842 -84226056 + MLT1J LTR MaLR 224 511 0 808 234 45 37 chr13 35518859 35519103 -84225795 - MIR SINE MIR 0 262 17 314 202 158 53 chr13 35519760 35519874 -84225024 - L2 LINE L2 -9 3304 3179 * 534 318 69 50 chr13 35519849 35520311 -84224587 - L2 LINE L2 -395 2919 2449 224 292 139 22 chr13 35520407 35520544 -84224354 + MIR SINE MIR 60 212 -50 276 294 184 65 chr13 35521138 35521475 -84223423 - L2 LINE L2 -924 2390 2014 233 216 49 39 chr13 35521770 35521872 -84223026 + HAL1b LINE L1 1212 1314 -34 265 185 111 74 chr13 35522200 35522349 -84222549 - MIR3 SINE MIR -15 193 41 255 246 148 8 chr13 35522380 35522502 -84222396 + L3b LINE CR1 1107 1245 -338 201 226 19 38 chr13 35522867 35522920 -84221978 + L2 LINE L2 3213 3264 -8 194 357 133 36 chr13 35522923 35523119 -84221779 + L3b LINE CR1 1335 1549 -34 22 35 0 0 chr13 35524020 35524049 -84220849 + AT_rich Low_complexity Low_complexity 1 29 0 407 168 141 74 chr13 35524397 35524484 -84220414 + MER69 DNA AcHobo 2368 2471 -55 3258 122 33 15 chr13 35524484 35525002 -84219896 - MER1A DNA MER1_type 0 527 1 407 168 141 74 chr13 35525002 35525063 -84219835 + MER69 DNA AcHobo 2471 2526 0 1486 186 3 69 chr13 35525942 35526238 -84218660 + L1MB1 LINE L1 5811 6125 -96 2232 107 0 3 chr13 35526238 35526536 -84218362 + AluSg SINE Alu 1 297 -13 1486 186 3 69 chr13 35526536 35526571 -84218327 + L1MB1 LINE L1 6125 6161 -60 2345 94 0 0 chr13 35526571 35526868 -84218030 + AluY SINE Alu 1 297 -14 1486 186 3 69 chr13 35526868 35526971 -84217927 + L1MB1 LINE L1 6161 6221 0 255 103 0 0 chr13 35526980 35527019 -84217879 + (GGA)n Simple_repeat Simple_repeat 2 40 0 4282 192 69 33 chr13 35527207 35528285 -84216613 + Charlie1a DNA MER1_type 1 1117 -338 1057 203 53 9 chr13 35528285 35528512 -84216386 + MLT1F1 LTR MaLR 3 239 -328 977 201 5 34 chr13 35528682 35528886 -84216012 + MER58A DNA MER1_type 27 224 0 359 270 237 7 chr13 35529715 35529867 -84215031 - L2 LINE L2 -1 3312 3126 297 0 0 0 chr13 35529893 35529926 -84214972 + (CA)n Simple_repeat Simple_repeat 2 34 0 589 279 123 42 chr13 35530005 35530364 -84214534 + L1MEd LINE L1 573 960 -5456 304 261 34 17 chr13 35530368 35530487 -84214411 + L1MEd LINE L1 1015 1135 -5281 2425 172 34 4 chr13 35530500 35530976 -84213922 + L1MB3 LINE L1 5616 6105 -78 1695 106 26 0 chr13 35530988 35531252 -84213646 - L1MA6 LINE L1 0 6300 6030 520 133 56 0 chr13 35531252 35531342 -84213556 + L1MA6 LINE L1 5840 5934 -366 468 119 36 0 chr13 35531343 35531427 -84213471 + L1MB3 LINE L1 6095 6181 -2 6712 61 6 16 chr13 35531431 35532951 -84211947 - L1PA7 LINE L1 -3 6151 4635 416 206 38 8 chr13 35533054 35533185 -84211713 + L1MEd LINE L1 1201 1335 -5081 397 343 41 6 chr13 35533237 35533406 -84211492 + HAL1 LINE L1 1425 1599 -908 342 45 0 0 chr13 35533407 35533451 -84211447 + (CA)n Simple_repeat Simple_repeat 2 45 0 2104 184 52 7 chr13 35533544 35533989 -84210909 - MLT1C LTR MaLR 0 467 3 24 32 0 0 chr13 35534135 35534166 -84210732 + AT_rich Low_complexity Low_complexity 1 31 0 323 278 142 21 chr13 35534418 35535099 -84209799 + L1MEd LINE L1 2390 3162 -3264 1536 194 25 68 chr13 35535185 35535263 -84209635 + L1MDa LINE L1 18 98 -6442 2066 126 3 0 chr13 35535263 35535549 -84209349 + AluSp SINE Alu 5 291 -22 1536 194 25 68 chr13 35535549 35535868 -84209030 + L1MDa LINE L1 98 398 -6142 2613 310 94 60 chr13 35535975 35537896 -84207002 - L2 LINE L2 -215 3057 1038 3940 203 64 85 chr13 35537900 35539133 -84205765 - Charlie2a DNA MER1_type -2 2860 1603 1483 100 76 0 chr13 35539133 35539382 -84205516 - L1MA2 LINE L1 -3 6301 6034 573 161 0 0 chr13 35539382 35539471 -84205427 - L1MD1 LINE L1 -8 6234 6142 3940 203 64 85 chr13 35539471 35539494 -84205404 - Charlie2a DNA MER1_type -1258 1604 1582 2007 132 0 33 chr13 35539494 35539797 -84205101 - AluSx SINE Alu -19 293 1 3940 203 64 85 chr13 35539797 35540314 -84204584 - Charlie2a DNA MER1_type -1280 1582 1122 779 37 148 0 chr13 35540388 35540496 -84204402 - L1PA13 LINE L1 -4 6159 6036 539 229 72 44 chr13 35540497 35540877 -84204021 - Charlie2a DNA MER1_type -1744 1118 689 2575 164 55 25 chr13 35540879 35541447 -84203451 + L1MC3 LINE L1 7201 7785 0 1062 286 152 32 chr13 35541450 35542076 -84202822 - Charlie2a DNA MER1_type -2161 701 1 270 308 44 13 chr13 35542077 35542236 -84202662 - L2 LINE L2 -2273 1041 878 380 236 11 11 chr13 35542403 35542492 -84202406 + L2 LINE L2 3224 3312 -1 1939 156 3 0 chr13 35544073 35544374 -84200524 + AluJo SINE Alu 1 302 -10 287 165 12 106 chr13 35545677 35545762 -84199136 - LTR67 LTR ERVL -4 553 477 474 317 53 44 chr13 35546079 35546130 -84198768 - MIR SINE MIR -6 256 207 192 77 0 0 chr13 35546130 35546156 -84198742 + (TG)n Simple_repeat Simple_repeat 1 26 0 474 317 53 44 chr13 35546156 35546331 -84198567 - MIR SINE MIR -55 207 28 2228 117 49 9 chr13 35546607 35546957 -84197941 + THE1B LTR MaLR 1 364 0 1031 204 136 52 chr13 35547277 35547569 -84197329 + MLT1C LTR MaLR 1 342 -125 3805 169 20 49 chr13 35547569 35548324 -84196574 + MER44D DNA MER2_type 1 605 0 1031 204 136 52 chr13 35548324 35548457 -84196441 + MLT1C LTR MaLR 342 462 -5 2090 119 0 0 chr13 35548877 35549154 -84195744 + AluSx SINE Alu 1 277 -35 259 366 30 8 chr13 35550126 35550260 -84194638 - MIR3 SINE MIR -10 198 62 212 137 0 137 chr13 35553523 35553574 -84191324 + L2 LINE L2 3265 3308 -5 560 268 73 97 chr13 35555084 35555391 -84189507 - L1ME4a LINE L1 -2 6119 5806 1459 69 35 5 chr13 35555391 35555594 -84189304 + L1PA10 LINE L1 5956 6164 -4 450 0 0 0 chr13 35555596 35555646 -84189252 + (TA)n Simple_repeat Simple_repeat 1 50 0 560 268 73 97 chr13 35555646 35555831 -84189067 - L1ME4a LINE L1 -316 5805 5636 503 157 12 0 chr13 35556117 35556200 -84188698 + Tigger4(Zombi) DNA MER2_type 1 84 -2647 * 3040 91 29 78 chr13 35556197 35556347 -84188551 + Tigger4(Zombi) DNA MER2_type 2169 2325 -406 2198 116 3 7 chr13 35556347 35556657 -84188241 - AluSx SINE Alu -3 309 1 3040 91 29 78 chr13 35556657 35557098 -84187800 + Tigger4(Zombi) DNA MER2_type 2325 2731 0 744 103 8 0 chr13 35557698 35557815 -84187083 - AluSc SINE Alu -6 303 186 223 292 139 0 chr13 35558072 35558144 -84186754 + MER5C DNA MER1_type 2 83 -241 959 150 0 0 chr13 35559834 35559981 -84184917 - AluSg/x SINE Alu 0 310 164 980 245 56 43 chr13 35560437 35560812 -84184086 - MLT1I LTR MaLR -25 384 5 354 255 29 128 chr13 35560850 35560970 -84183928 + MIR SINE MIR 5 93 -159 2069 105 11 0 chr13 35560970 35561256 -84183642 + AluSx SINE Alu 5 293 -19 354 255 29 128 chr13 35561256 35561361 -84183537 + MIR SINE MIR 93 207 -45 22 0 0 0 chr13 35561829 35561851 -84183047 + AT_rich Low_complexity Low_complexity 1 22 0 1078 206 76 79 chr13 35563405 35563774 -84181124 - L1MC4 LINE L1 -30 8012 7645 186 43 0 0 chr13 35564695 35564718 -84180180 + (CA)n Simple_repeat Simple_repeat 2 24 0 2119 130 3 0 chr13 35565171 35565464 -84179434 - AluJb SINE Alu -18 294 1 2145 103 4 0 chr13 35566177 35566492 -84178406 + AluSx SINE Alu 3 318 0 26 0 0 0 chr13 35566769 35566795 -84178103 + AT_rich Low_complexity Low_complexity 1 26 0 385 326 22 22 chr13 35569776 35569914 -84174984 + MIR SINE MIR 46 183 -79 198 329 56 35 chr13 35570049 35570192 -84174706 + MIR3 SINE MIR 58 203 -5 186 133 0 0 chr13 35570326 35570356 -84174542 + (TTC)n Simple_repeat Simple_repeat 1 30 0 401 258 48 24 chr13 35571086 35571210 -84173688 - MIR SINE MIR -65 143 17 357 174 0 0 chr13 35574212 35574281 -84170617 + (TA)n Simple_repeat Simple_repeat 2 70 0 180 0 0 0 chr13 35574548 35574568 -84170330 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 228 205 181 60 chr13 35575076 35575159 -84169739 + MER5A DNA MER1_type 73 165 -24 229 250 0 0 chr13 35575994 35576054 -84168844 + (CA)n Simple_repeat Simple_repeat 2 61 0 1530 72 0 0 chr13 35576417 35576610 -84168288 - L1PA10 LINE L1 -244 5924 5732 478 94 0 0 chr13 35576610 35576674 -84168224 + L1PA10 LINE L1 6101 6164 -4 529 289 154 43 chr13 35576706 35577211 -84167687 - L2 LINE L2 -72 3241 2653 255 177 0 0 chr13 35577378 35577440 -84167458 + CT-rich Low_complexity Low_complexity 2 63 0 270 81 0 0 chr13 35577440 35577477 -84167421 + (CA)n Simple_repeat Simple_repeat 1 37 0 2333 112 92 6 chr13 35577953 35578300 -84166598 - MER51B LTR ERV1 0 377 1 8243 152 38 17 chr13 35578302 35580326 -84164572 - MER51B-int LTR ERV1 -1 7815 5758 1928 87 70 4 chr13 35580331 35580683 -84164215 - MER51-int LTR ERV1 -2577 2640 2221 * 2529 139 136 4 chr13 35580671 35581159 -84163739 - MER51-int LTR ERV1 -2602 3344 2820 804 146 238 0 chr13 35581131 35581282 -84163616 - MER51-int LTR ERV1 -4489 3327 3141 * 713 45 67 0 chr13 35581282 35581371 -84163527 - MER51B LTR ERV1 -282 95 1 479 270 189 18 chr13 35582430 35582652 -84162246 - MIR SINE MIR 0 262 3 725 286 57 21 chr13 35583046 35583329 -84161569 - L2 LINE L2 -1 3312 3020 188 294 73 0 chr13 35583866 35583934 -84160964 - L2 LINE L2 -343 2971 2899 949 26 0 9 chr13 35584403 35584516 -84160382 - L1PA4 LINE L1 -3 6152 6041 227 372 22 15 chr13 35584616 35584753 -84160145 + L2 LINE L2 2709 2846 -468 200 219 141 133 chr13 35585144 35585272 -84159626 + L2 LINE L2 2929 3057 -215 432 258 58 58 chr13 35585543 35585670 -84159228 - HAL1b LINE L1 -806 542 416 1874 153 0 23 chr13 35585670 35585971 -84158927 + AluJo SINE Alu 1 294 -18 432 258 58 58 chr13 35585971 35586103 -84158795 - HAL1b LINE L1 -931 417 283 1042 209 134 28 chr13 35586252 35586518 -84158380 + MLT1F LTR MaLR 1 237 -305 1053 209 47 14 chr13 35586518 35586733 -84158165 + MER58A DNA MER1_type 1 222 -2 1042 209 134 28 chr13 35586733 35586744 -84158154 + MLT1F LTR MaLR 237 245 -297 2328 96 0 3 chr13 35586744 35587046 -84157852 - AluSx SINE Alu -11 301 1 1042 209 134 28 chr13 35587046 35587202 -84157696 + MLT1F LTR MaLR 245 541 -1 1779 230 117 10 chr13 35587203 35587708 -84157190 - MLT2F LTR ERVL -74 589 31 354 291 56 46 chr13 35587924 35588209 -84156689 - L1MEc LINE L1 -4819 1577 1290 347 212 12 0 chr13 35588350 35588435 -84156463 + CT-rich Low_complexity Low_complexity 3 88 0 540 306 129 9 chr13 35588957 35589189 -84155709 + MIR SINE MIR 3 262 0 1488 156 83 60 chr13 35589319 35589633 -84155265 + MSTB LTR MaLR 1 321 -105 3935 192 1 10 chr13 35589638 35590350 -84154548 + MST-int LTR MaLR 540 1245 -406 478 191 118 7 chr13 35590350 35590486 -84154412 + MSTB LTR MaLR 278 428 0 2105 100 0 0 chr13 35591338 35591609 -84153289 - L1PA11 LINE L1 -2 6172 5902 3962 217 24 26 chr13 35591615 35592793 -84152105 - L1PA12 LINE L1 -4903 2681 728 2058 122 13 23 chr13 35593675 35593978 -84150920 + AluJb SINE Alu 11 310 -2 2135 134 0 0 chr13 35594465 35594763 -84150135 - AluSq SINE Alu -15 298 1 2650 142 40 19 chr13 35594850 35595274 -84149624 + Tigger2a DNA MER2_type 2 434 0 2260 101 0 0 chr13 35595671 35595959 -84148939 + AluSx SINE Alu 11 298 -14 694 264 130 13 chr13 35596240 35596471 -84148427 + MIR SINE MIR 2 259 -3 723 172 52 0 chr13 35596795 35596911 -84147987 + FLAM_A SINE Alu 1 122 -11 2057 111 30 7 chr13 35597103 35597400 -84147498 + AluSg SINE Alu 1 304 -6 1838 157 3 7 chr13 35597810 35598104 -84146794 - AluJo SINE Alu -19 293 1 1015 161 0 28 chr13 35598240 35598420 -84146478 - FRAM SINE Alu -2 174 1 366 309 173 0 chr13 35598570 35598738 -84146160 - MIR SINE MIR -34 228 32 2154 119 0 7 chr13 35599406 35599708 -84145190 - AluSx SINE Alu -8 304 5 28 0 0 0 chr13 35601288 35601316 -84143582 + AT_rich Low_complexity Low_complexity 1 28 0 483 243 50 31 chr13 35601337 35601557 -84143341 - L1MC5 LINE L1 -519 7493 7237 2153 177 8 11 chr13 35601718 35602080 -84142818 - MLT1A1 LTR MaLR -4 361 1 639 110 0 0 chr13 35602444 35602526 -84142372 - 5S rRNA rRNA -33 88 7 2402 95 45 31 chr13 35602809 35603166 -84141732 - THE1B LTR MaLR -2 362 1 2495 174 42 43 chr13 35603282 35603633 -84141265 - MER63C DNA MER1_type -223 837 486 2134 128 7 0 chr13 35603633 35603937 -84140961 + AluSg SINE Alu 1 306 -4 2495 174 42 43 chr13 35603937 35604164 -84140734 - MER63C DNA MER1_type -574 486 260 3423 107 11 0 chr13 35604300 35604759 -84140139 - L1PA11 LINE L1 -2 6172 5709 2440 91 0 0 chr13 35604765 35605073 -84139825 - AluSq SINE Alu -5 308 1 370 198 12 0 chr13 35605168 35605249 -84139649 - MER63C DNA MER1_type -757 173 92 237 267 99 30 chr13 35605266 35605367 -84139531 + MER34 LTR ERV1 22 129 -413 374 302 77 28 chr13 35605611 35605793 -84139105 + MER34 LTR ERV1 345 535 -7 827 215 46 38 chr13 35605929 35605947 -84138951 - L1MB8 LINE L1 -12 6166 6150 1427 204 123 17 chr13 35605947 35606305 -84138593 + MSTD LTR MaLR 1 396 0 827 215 46 38 chr13 35606305 35606523 -84138375 - L1MB8 LINE L1 -28 6150 5928 2623 150 2 7 chr13 35606524 35606951 -84137947 - MER50 LTR ERV1 -23 711 287 1093 151 75 15 chr13 35607110 35607309 -84137589 - MER50 LTR ERV1 -523 211 1 957 204 73 0 chr13 35607310 35607516 -84137382 - L1ME1 LINE L1 -239 5927 5707 208 186 47 0 chr13 35607537 35607580 -84137318 + L2 LINE L2 3263 3307 -6 778 254 92 66 chr13 35607707 35608217 -84136681 - LTR48B LTR ERV1 -12 772 3 185 268 0 0 chr13 35608217 35608258 -84136640 + MIR3 SINE MIR 140 180 -28 558 190 0 10 chr13 35608306 35608406 -84136492 - MER5B DNA MER1_type -79 99 1 2026 117 30 10 chr13 35608786 35609084 -84135814 - AluSc SINE Alu -5 304 1 722 308 82 41 chr13 35609403 35609890 -84135008 + LTR33 LTR ERVL 15 521 0 33 0 0 0 chr13 35610697 35610730 -84134168 + AT_rich Low_complexity Low_complexity 1 33 0 487 222 10 0 chr13 35611307 35611406 -84133492 - MER69 DNA AcHobo -572 654 555 1097 164 6 0 chr13 35611416 35611599 -84133299 - AluJb SINE Alu 0 312 129 1905 127 0 0 chr13 35611612 35611872 -84133026 - AluSx SINE Alu -52 260 1 2171 218 23 7 chr13 35612019 35612459 -84132439 + MER39 LTR ERV1 261 707 0 1264 99 11 22 chr13 35612872 35613053 -84131845 - AluSq SINE Alu -14 299 121 1593 188 138 21 chr13 35613548 35613984 -84130914 + LTR54B LTR ERV1 10 496 -2 2030 149 0 0 chr13 35615395 35615691 -84129207 + AluJb SINE Alu 7 302 -10 2418 165 103 9 chr13 35616473 35616909 -84127989 - MER61D LTR ERV1 0 501 25 283 213 0 0 chr13 35616876 35616937 -84127961 - LTR28 LTR ERV1 -959 61 1 * 359 216 105 70 chr13 35617261 35617432 -84127466 - MLT1H1 LTR MaLR -33 522 346 1328 180 51 38 chr13 35617455 35617807 -84127091 + MER58B DNA MER1_type 11 340 -1 2135 112 6 59 chr13 35617836 35618158 -84126740 - AluSq SINE Alu -8 305 1 231 271 108 36 chr13 35618166 35618332 -84126566 - MLT1H1 LTR MaLR -261 288 111 687 206 52 7 chr13 35618560 35618715 -84126183 - LTR1B LTR ERV1 0 826 665 1257 264 46 78 chr13 35619525 35620089 -84124809 + MLT1H LTR MaLR 4 549 0 303 203 81 0 chr13 35620096 35620170 -84124728 - MLT1F LTR MaLR -7 535 456 553 264 126 0 chr13 35620219 35620386 -84124512 + MLT1G1 LTR MaLR 1 188 -407 1921 142 0 0 chr13 35620605 35620873 -84124025 + AluSx SINE Alu 29 296 -16 853 251 100 26 chr13 35620956 35621267 -84123631 + L1ME3A LINE L1 5824 6157 -13 873 244 112 42 chr13 35621294 35621606 -84123292 + MLT1J LTR MaLR 101 434 -77 2112 113 3 42 chr13 35622546 35622856 -84122042 + AluSx SINE Alu 6 303 -9 298 343 164 0 chr13 35623126 35623272 -84121626 - MIR SINE MIR -61 201 32 384 306 89 17 chr13 35623459 35623639 -84121259 - MIR SINE MIR -50 212 20 2122 120 10 0 chr13 35623692 35623984 -84120914 - AluSx SINE Alu -17 295 1 220 347 40 84 chr13 35625061 35625335 -84119563 + L2 LINE L2 256 517 -2797 2307 123 37 35 chr13 35625789 35626163 -84118735 + THE1C LTR MaLR 1 375 0 408 345 62 23 chr13 35626284 35626542 -84118356 + L2 LINE L2 2225 2492 -822 798 118 178 0 chr13 35627662 35627797 -84117101 - MSTA LTR MaLR -269 159 1 2341 110 3 0 chr13 35628326 35628636 -84116262 + AluSq SINE Alu 1 311 -2 2284 98 19 10 chr13 35629230 35629537 -84115361 - AluSx SINE Alu -2 310 1 4581 248 108 98 chr13 35629679 35629879 -84115019 + L1MD1 LINE L1 3 200 -6340 260 19 75 19 chr13 35629879 35629932 -84114966 + (TTTG)n Simple_repeat Simple_repeat 4 59 0 4581 248 108 98 chr13 35629932 35631754 -84113144 + L1MD1 LINE L1 200 2045 -4495 2433 177 85 20 chr13 35633509 35633917 -84110981 + L1MD1 LINE L1 2030 2410 -4130 1729 174 7 23 chr13 35633917 35634227 -84110671 + AluJo SINE Alu 1 305 -7 2433 177 85 20 chr13 35634227 35634686 -84110212 + L1MD1 LINE L1 2410 2956 -3584 * 4165 210 53 28 chr13 35634682 35635404 -84109494 + L1MD1 LINE L1 3919 4726 -1814 2150 106 38 0 chr13 35635404 35635697 -84109201 + AluSp SINE Alu 1 304 -9 4165 210 53 28 chr13 35635697 35636206 -84108692 + L1MD1 LINE L1 4726 5221 -1319 770 250 12 19 chr13 35636206 35636366 -84108532 - AluJo SINE Alu -151 161 3 4998 184 37 19 chr13 35636369 35637687 -84107211 + L1MD1 LINE L1 5243 6593 -43 1812 181 41 9 chr13 35637695 35638038 -84106860 - MLT1A1 LTR MaLR -10 355 2 1820 159 0 28 chr13 35638077 35638398 -84106500 - AluJb SINE Alu 0 312 1 209 229 0 21 chr13 35638451 35638499 -84106399 + (CTA)n Simple_repeat Simple_repeat 2 48 0 2281 109 0 3 chr13 35638720 35639031 -84105867 + AluSx SINE Alu 1 310 -2 722 169 184 0 chr13 35639813 35639949 -84104949 + AluSp SINE Alu 137 297 -16 2475 66 0 13 chr13 35640007 35640312 -84104586 + AluY SINE Alu 1 301 -10 1636 106 23 26 chr13 35640375 35640640 -84104258 - L1MA8 LINE L1 -6 6285 6022 1957 130 33 10 chr13 35640645 35640946 -84103952 - AluJb SINE Alu -4 308 1 3467 89 5 5 chr13 35641008 35641457 -84103441 + L1PA10 LINE L1 5717 6165 -3 34 42 0 0 chr13 35642100 35642148 -84102750 + AT_rich Low_complexity Low_complexity 1 48 0 285 29 0 0 chr13 35642338 35642372 -84102526 + (CA)n Simple_repeat Simple_repeat 2 35 0 436 340 81 20 chr13 35642508 35642805 -84102093 - L2 LINE L2 -1 3312 2998 4481 165 33 16 chr13 35643024 35644029 -84100869 + L1MB2 LINE L1 5096 6119 -52 2207 95 0 3 chr13 35644176 35644470 -84100428 - AluY SINE Alu -18 293 1 1914 127 0 4 chr13 35645566 35645834 -84099064 + AluSx SINE Alu 1 267 -45 391 237 178 0 chr13 35645847 35645965 -84098933 + Charlie8 DNA MER1_type 97 235 -2182 616 173 168 35 chr13 35646021 35646194 -84098704 - L2 LINE L2 -1 3312 3117 282 325 126 7 chr13 35646361 35646512 -84098386 + L2 LINE L2 2507 2675 -639 187 319 80 0 chr13 35646661 35646774 -84098124 + MIR SINE MIR 105 226 -36 332 288 120 0 chr13 35646991 35647116 -84097782 + MER91A DNA MER1_type 5 144 -52 182 298 170 29 chr13 35647202 35647373 -84097525 + L2 LINE L2 3076 3270 -2 23 33 0 0 chr13 35647601 35647631 -84097267 + AT_rich Low_complexity Low_complexity 1 30 0 30 93 0 0 chr13 35650911 35650997 -84093901 + GC_rich Low_complexity Low_complexity 1 86 0 366 134 0 0 chr13 35651085 35651152 -84093746 + (CCG)n Simple_repeat Simple_repeat 1 67 0 2364 144 79 36 chr13 35651602 35652045 -84092853 + LTR26 LTR ERV1 142 603 0 253 337 0 0 chr13 35652102 35652191 -84092707 + L2 LINE L2 1871 1959 -1355 242 319 54 49 chr13 35652572 35652674 -84092224 + L2 LINE L2 1798 1903 -1411 1475 201 30 24 chr13 35652674 35652972 -84091926 - AluJo SINE Alu -12 300 1 242 319 54 49 chr13 35652972 35653054 -84091844 + L2 LINE L2 1903 1983 -1331 1970 181 117 49 chr13 35653769 35654238 -84090660 + MLT1D LTR MaLR 5 505 0 2002 112 4 14 chr13 35656016 35656292 -84088606 + AluSx SINE Alu 17 289 -23 5444 135 22 31 chr13 35656437 35656487 -84088411 + MER4D LTR ERV1 6 55 -848 3465 143 72 21 chr13 35656487 35657069 -84087829 + LTR9 LTR ERV1 1 612 0 5444 135 22 31 chr13 35657069 35657211 -84087687 + MER4D LTR ERV1 55 197 -706 2393 94 0 3 chr13 35657211 35657518 -84087380 + AluSx SINE Alu 1 306 -6 5444 135 22 31 chr13 35657518 35658230 -84086668 + MER4D LTR ERV1 197 903 0 2039 136 7 19 chr13 35659173 35659482 -84085416 - AluSx SINE Alu -7 305 1 396 307 22 7 chr13 35659684 35659821 -84085077 - L2 LINE L2 0 3313 3175 210 329 82 0 chr13 35660751 35660824 -84084074 - MIR SINE MIR -103 105 27 1799 255 77 8 chr13 35660967 35661552 -84083346 - Charlie7 DNA MER1_type -511 2101 1477 1940 143 0 0 chr13 35661555 35661835 -84083063 + AluSx SINE Alu 1 280 -32 183 42 0 0 chr13 35661835 35661859 -84083039 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 321 232 11 0 chr13 35661873 35661968 -84082930 - L1MA4 LINE L1 -5 6295 6200 2111 321 62 27 chr13 35662080 35663266 -84081632 - ERVL LTR ERVL -394 5370 4143 608 236 111 42 chr13 35663641 35663857 -84081041 + LTR16B LTR ERVL 107 337 -127 681 335 126 47 chr13 35664134 35665143 -84079755 - L2 LINE L2 -618 2696 1608 219 69 0 0 chr13 35665205 35665234 -84079664 + (GA)n Simple_repeat Simple_repeat 1 29 0 1333 112 5 5 chr13 35665443 35665640 -84079258 + L1PA6 LINE L1 5958 6154 0 360 256 101 36 chr13 35666690 35666858 -84078040 + L1MEc LINE L1 1550 1696 -4846 347 256 11 33 chr13 35666952 35667042 -84077856 - MER5A DNA MER1_type -51 138 51 270 320 56 34 chr13 35667082 35667316 -84077582 + HAL1 LINE L1 1500 1738 -769 422 316 55 20 chr13 35667646 35667899 -84076999 + L1MEc LINE L1 2561 2822 -4003 1351 224 32 55 chr13 35667908 35668341 -84076557 - MLT1C LTR MaLR 0 467 45 2348 235 40 59 chr13 35668359 35669104 -84075794 - MLT1C-int LTR MaLR -4 1367 637 251 321 61 16 chr13 35669127 35669373 -84075525 + L1MEc LINE L1 2951 3207 -3437 815 294 88 26 chr13 35669402 35670232 -84074666 + L1MEc LINE L1 3873 4753 -1891 * 5671 142 14 7 chr13 35670227 35671966 -84072932 + L1PA13 LINE L1 4386 6129 -34 899 97 8 0 chr13 35674229 35674363 -84070535 + LTR47A LTR ERVL 4 138 -314 1239 137 33 0 chr13 35674398 35674610 -84070288 + LTR47A LTR ERVL 234 452 0 2249 110 3 0 chr13 35675151 35675451 -84069447 + AluSx SINE Alu 1 301 -11 1760 179 140 11 chr13 35675829 35676208 -84068690 - MSTA LTR MaLR 0 428 1 232 368 99 18 chr13 35680101 35680272 -84064626 + L2 LINE L2 609 793 -2521 1508 175 107 0 chr13 35681235 35681561 -84063337 - MER46B DNA MER2_type 0 236 1 342 0 0 0 chr13 35682029 35682067 -84062831 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 29 0 0 chr13 35682881 35682915 -84061983 + AT_rich Low_complexity Low_complexity 1 34 0 201 271 14 0 chr13 35682918 35682988 -84061910 + (TA)n Simple_repeat Simple_repeat 1 71 0 1267 188 73 23 chr13 35683735 35684088 -84060810 + MLT1A2 LTR MaLR 1 503 -2 361 266 31 88 chr13 35684433 35684562 -84060336 + MIR SINE MIR 15 131 -131 2516 109 61 24 chr13 35684562 35684601 -84060297 - MSTB LTR MaLR 0 426 390 2616 55 0 0 chr13 35684601 35684909 -84059989 + AluY SINE Alu 1 308 -3 2516 109 61 24 chr13 35684909 35685280 -84059618 - MSTB LTR MaLR -36 390 1 361 266 31 88 chr13 35685280 35685342 -84059556 + MIR SINE MIR 131 195 -67 818 191 20 80 chr13 35685345 35685544 -84059354 - MER5A DNA MER1_type 0 189 3 1094 190 54 54 chr13 35685756 35686087 -84058811 - MER33 DNA MER1_type -6 318 1 329 180 0 0 chr13 35687016 35687077 -84057821 - MER116 DNA Mariner -5 75 15 224 216 0 0 chr13 35687232 35687269 -84057629 + MER5B DNA MER1_type 3 39 -139 234 245 0 0 chr13 35687310 35687363 -84057535 + MLT1E LTR MaLR 111 163 -430 775 264 79 54 chr13 35687427 35687707 -84057191 + MLT1E LTR MaLR 368 593 0 463 240 101 0 chr13 35687708 35687837 -84057061 + MER5B DNA MER1_type 37 178 0 518 295 62 43 chr13 35687841 35688051 -84056847 + MIR SINE MIR 35 248 -14 254 157 43 57 chr13 35688108 35688178 -84056720 - MLT1B LTR MaLR -2 388 320 240 35 0 0 chr13 35688298 35688327 -84056571 + (GGGTG)n Simple_repeat Simple_repeat 4 32 0 23 0 0 0 chr13 35688394 35688417 -84056481 + GC_rich Low_complexity Low_complexity 1 23 0 230 270 0 0 chr13 35688442 35688505 -84056393 + G-rich Low_complexity Low_complexity 5 67 0 21 36 0 0 chr13 35689972 35690000 -84054898 + AT_rich Low_complexity Low_complexity 1 28 0 199 297 88 33 chr13 35691476 35691567 -84053331 + L2 LINE L2 3200 3295 -18 180 77 0 0 chr13 35692582 35692608 -84052290 + (TC)n Simple_repeat Simple_repeat 1 26 0 2492 68 0 0 chr13 35693601 35693909 -84050989 - AluY SINE Alu -3 308 1 219 249 6 152 chr13 35694729 35694894 -84050004 - L2 LINE L2 -4 3309 3169 1177 182 162 3 chr13 35694966 35695263 -84049635 - MER2 DNA MER2_type 0 344 1 2317 108 3 0 chr13 35696139 35696445 -84048453 + AluSp SINE Alu 1 307 -6 21 0 0 0 chr13 35696604 35696625 -84048273 + AT_rich Low_complexity Low_complexity 1 21 0 1741 162 0 14 chr13 35696837 35697127 -84047771 + AluJb SINE Alu 1 286 -26 208 182 91 0 chr13 35697186 35697230 -84047668 - L2 LINE L2 -1 3312 3265 730 180 0 0 chr13 35697698 35697837 -84047061 - L1MC1 LINE L1 -207 6126 5988 2510 50 0 7 chr13 35697928 35698231 -84046667 - AluY SINE Alu -10 301 1 207 128 77 0 chr13 35698389 35698428 -84046470 - MIR SINE MIR -98 164 123 3794 170 37 40 chr13 35700408 35700455 -84044443 - L1MB4 LINE L1 -3 6177 6131 1522 152 33 43 chr13 35700455 35700758 -84044140 - AluJo SINE Alu -12 300 1 3794 170 37 40 chr13 35700758 35701629 -84043269 - L1MB4 LINE L1 -49 6131 5262 518 146 122 65 chr13 35702176 35702299 -84042599 + FLAM_C SINE Alu 3 132 -11 1559 163 3 62 chr13 35702484 35702791 -84042107 - AluJo SINE Alu -23 289 1 945 204 41 0 chr13 35703029 35703225 -84041673 - MER20 DNA MER1_type -1 218 15 216 222 37 56 chr13 35703336 35703390 -84041508 - L2 LINE L2 -10 3303 3251 27 0 0 0 chr13 35704271 35704298 -84040600 + AT_rich Low_complexity Low_complexity 1 27 0 2223 112 0 6 chr13 35704840 35705152 -84039746 + AluSg SINE Alu 1 310 0 555 248 35 28 chr13 35705323 35705464 -84039434 - L2 LINE L2 0 3313 3172 2509 181 32 42 chr13 35705476 35705509 -84039389 + L1MB5 LINE L1 4672 4704 -1470 2319 95 0 13 chr13 35705509 35705815 -84039083 + AluSg SINE Alu 1 302 -8 2509 181 32 42 chr13 35705815 35706537 -84038361 + L1MB5 LINE L1 4704 5417 -757 2347 107 0 16 chr13 35706537 35706854 -84038044 + AluSx SINE Alu 1 312 0 2509 181 32 42 chr13 35706854 35707170 -84037728 + L1MB5 LINE L1 5417 5735 -439 1380 184 0 22 chr13 35707230 35707502 -84037396 + L1MB5 LINE L1 5901 6166 -8 22 35 0 0 chr13 35707502 35707531 -84037367 + AT_rich Low_complexity Low_complexity 1 29 0 387 0 0 0 chr13 35707537 35707580 -84037318 + (TG)n Simple_repeat Simple_repeat 2 44 0 946 245 69 87 chr13 35707597 35707687 -84037211 - L2 LINE L2 -172 3141 3051 2296 109 3 0 chr13 35707687 35707989 -84036909 + AluSg SINE Alu 1 303 -7 946 245 69 87 chr13 35707989 35708451 -84036447 - L2 LINE L2 -262 3051 2608 234 323 71 8 chr13 35708488 35708615 -84036283 + L2 LINE L2 2185 2319 -995 2987 217 61 50 chr13 35708807 35710037 -84034861 - L1M4 LINE L1 -1462 4684 3441 2596 55 0 7 chr13 35710107 35710415 -84034483 + AluY SINE Alu 1 306 -5 189 0 0 0 chr13 35711191 35711212 -84033686 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 27 73 0 0 chr13 35711445 35711500 -84033398 + AT_rich Low_complexity Low_complexity 1 55 0 1840 160 0 0 chr13 35711832 35712155 -84032743 + AluJb SINE Alu 1 323 0 927 144 133 26 chr13 35712701 35712896 -84032002 + MER20 DNA MER1_type 1 216 -3 2069 134 48 31 chr13 35713749 35714107 -84030791 - THE1B LTR MaLR 0 364 1 26 30 0 0 chr13 35714289 35714322 -84030576 + AT_rich Low_complexity Low_complexity 1 33 0 560 286 59 23 chr13 35714462 35714792 -84030106 - L1ME3 LINE L1 -239 5923 5684 264 111 0 0 chr13 35714802 35714847 -84030051 + (TA)n Simple_repeat Simple_repeat 1 45 0 255 276 20 0 chr13 35715103 35715201 -84029697 - L1ME3 LINE L1 -508 5654 5555 231 269 0 0 chr13 35716939 35716991 -84027907 + L2 LINE L2 3261 3312 -1 1785 137 77 58 chr13 35719755 35720120 -84024778 - THE1C LTR MaLR 0 375 4 186 304 169 11 chr13 35720307 35720491 -84024407 + L2 LINE L2 1293 1505 -1809 429 314 80 81 chr13 35720590 35720742 -84024156 + L2 LINE L2 2558 2709 -563 2338 110 0 0 chr13 35720742 35721050 -84023848 + AluSx SINE Alu 1 308 -4 429 314 80 81 chr13 35721050 35721097 -84023801 + L2 LINE L2 2709 2755 -517 836 127 110 0 chr13 35721097 35721215 -84023683 + FLAM_C SINE Alu 3 133 0 429 314 80 81 chr13 35721215 35721727 -84023171 + L2 LINE L2 2755 3272 0 535 274 124 0 chr13 35722014 35722200 -84022698 + MIR SINE MIR 5 213 -49 180 0 0 0 chr13 35722862 35722882 -84022016 + (TG)n Simple_repeat Simple_repeat 2 21 0 208 320 0 39 chr13 35724326 35724404 -84020494 - MIR SINE MIR -68 140 66 1955 167 0 0 chr13 35724485 35724797 -84020101 - AluJb SINE Alu 0 312 1 806 192 58 13 chr13 35725306 35725462 -84019436 - AluJo SINE Alu -30 282 120 385 65 16 16 chr13 35725984 35726046 -84018852 + (CA)n Simple_repeat Simple_repeat 2 63 0 1436 209 94 0 chr13 35727249 35727631 -84017267 - Charlie1 DNA MER1_type -1 2760 2343 387 211 0 14 chr13 35727630 35727701 -84017197 - Charlie1 DNA MER1_type -2691 70 1 * 308 239 97 0 chr13 35727725 35727838 -84017060 + L1ME4a LINE L1 5994 6117 -4 443 163 255 0 chr13 35728209 35728307 -84016591 - FRAM SINE Alu -35 141 19 207 69 0 0 chr13 35729535 35729564 -84015334 + (AACTG)n Simple_repeat Simple_repeat 2 30 0 1857 176 48 9 chr13 35729700 35730035 -84014863 - MER7A DNA MER2_type 0 346 1 191 167 24 0 chr13 35730071 35730113 -84014785 + (TG)n Simple_repeat Simple_repeat 2 44 0 2080 112 27 0 chr13 35730890 35731184 -84013714 - AluSc SINE Alu -7 302 1 782 221 164 14 chr13 35731589 35731869 -84013029 - MER5C DNA MER1_type 0 324 3 21 36 0 0 chr13 35731958 35731986 -84012912 + AT_rich Low_complexity Low_complexity 1 28 0 226 0 0 0 chr13 35733049 35733076 -84011822 - L1MC2 LINE L1 -16 6328 6302 435 38 0 0 chr13 35733630 35733683 -84011215 + (CA)n Simple_repeat Simple_repeat 2 54 0 2273 102 0 13 chr13 35734091 35734405 -84010493 + AluSg SINE Alu 1 310 0 854 325 105 24 chr13 35734998 35735669 -84009229 + L2 LINE L2 2450 3198 -74 2210 132 0 0 chr13 35735669 35735980 -84008918 - AluJb SINE Alu -1 311 1 854 325 105 24 chr13 35735980 35736056 -84008842 + L2 LINE L2 3198 3266 -6 2184 104 3 7 chr13 35738566 35738864 -84006034 - AluSx SINE Alu -15 297 1 532 405 36 13 chr13 35739359 35739663 -84005235 - L2 LINE L2 -31 3241 2931 425 340 159 11 chr13 35739802 35740172 -84004726 - L2 LINE L2 -433 2881 2457 375 292 0 0 chr13 35740309 35740398 -84004500 - L2 LINE L2 -11 3302 3214 1455 226 35 67 chr13 35740418 35740719 -84004179 - MSTD LTR MaLR -7 389 103 2308 89 3 0 chr13 35740719 35741012 -84003886 - AluSg SINE Alu -16 294 1 1455 226 35 67 chr13 35741012 35741112 -84003786 - MSTD LTR MaLR -293 103 1 485 250 9 102 chr13 35741495 35741711 -84003187 - L2 LINE L2 -91 3222 3027 309 172 0 0 chr13 35742151 35742215 -84002683 + (TG)n Simple_repeat Simple_repeat 1 64 0 249 280 72 106 chr13 35742235 35742471 -84002427 - L2 LINE L2 -565 2749 2522 215 159 0 45 chr13 35742666 35742710 -84002188 - L2 LINE L2 -13 3259 3218 269 278 52 31 chr13 35742898 35742995 -84001903 - L2 LINE L2 -189 3083 2985 258 280 40 82 chr13 35746233 35746266 -83998632 + L2 LINE L2 2063 2096 -1218 1530 195 10 13 chr13 35746266 35746573 -83998325 - AluJo SINE Alu -6 306 1 258 280 40 82 chr13 35746573 35746789 -83998109 + L2 LINE L2 2096 2350 -964 481 270 73 40 chr13 35746869 35747066 -83997832 + MIR SINE MIR 53 256 -6 729 196 184 0 chr13 35747537 35747705 -83997193 - L1MA6 LINE L1 -9 6291 6093 637 133 29 0 chr13 35747700 35747805 -83997093 + L1MA6 LINE L1 5969 6076 -224 * 296 325 121 19 chr13 35748767 35749118 -83995780 - L2 LINE L2 -204 3068 2649 1761 169 13 7 chr13 35749506 35749814 -83995084 + AluSx SINE Alu 1 310 -2 1848 155 28 0 chr13 35749976 35750266 -83994632 - AluSx SINE Alu -14 298 1 1852 151 0 3 chr13 35750430 35750739 -83994159 + AluSx SINE Alu 1 308 0 271 290 60 0 chr13 35751171 35751271 -83993627 + L3 LINE CR1 645 750 -827 2284 77 0 20 chr13 35751545 35751866 -83993032 + AluY SINE Alu 1 311 0 525 290 172 7 chr13 35751880 35752159 -83992739 + L3 LINE CR1 1209 1533 -44 737 236 173 5 chr13 35752161 35752352 -83992546 + MER58A DNA MER1_type 2 224 0 497 145 297 7 chr13 35753168 35753204 -83991694 + MER3 DNA MER1_type 15 39 -170 687 160 101 25 chr13 35753204 35753323 -83991575 + FLAM_A SINE Alu 1 128 -5 497 145 297 7 chr13 35753323 35753424 -83991474 + MER3 DNA MER1_type 39 192 -17 1794 163 0 7 chr13 35754003 35754286 -83990612 - AluJo SINE Alu -14 298 18 1151 167 5 31 chr13 35756542 35756734 -83988164 + AluJo SINE Alu 1 187 -125 304 211 70 53 chr13 35757097 35757211 -83987687 + L2 LINE L2 2330 2445 -869 2241 176 55 2 chr13 35757223 35757621 -83987277 + MSTA LTR MaLR 1 419 -9 292 349 93 40 chr13 35757817 35758195 -83986703 + L2 LINE L2 2816 3213 -59 495 318 23 0 chr13 35758408 35758581 -83986317 + MIR SINE MIR 7 183 -79 608 215 182 23 chr13 35758612 35758826 -83986072 + MLT1J LTR MaLR 234 481 -30 351 329 121 0 chr13 35759978 35760209 -83984689 + L2 LINE L2 1616 1874 -1440 257 360 167 23 chr13 35760571 35761002 -83983896 + L2 LINE L2 2346 2838 -476 858 205 0 48 chr13 35761668 35761834 -83983064 - FRAM SINE Alu -18 158 1 303 282 13 0 chr13 35761975 35762053 -83982845 + MLT1L LTR MaLR 489 567 -48 380 270 159 26 chr13 35763911 35764100 -83980798 + MIR SINE MIR 32 245 -17 259 249 0 12 chr13 35766375 35766455 -83978443 + L1MC4a LINE L1 6830 6962 -918 511 245 53 32 chr13 35766584 35766772 -83978126 + L1MC5 LINE L1 7042 7233 -728 849 235 76 45 chr13 35766918 35767093 -83977805 + L1MC5 LINE L1 7292 7460 -501 2278 87 24 0 chr13 35767093 35767391 -83977507 + AluSq SINE Alu 1 305 -8 849 235 76 45 chr13 35767391 35767700 -83977198 + L1MC5 LINE L1 7460 7791 -170 267 311 107 45 chr13 35767805 35767982 -83976916 + MIR SINE MIR 74 261 -1 216 0 0 0 chr13 35768106 35768130 -83976768 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 329 296 141 41 chr13 35769062 35769282 -83975616 + L1M2 LINE L1 678 919 -5930 272 171 66 26 chr13 35769392 35769468 -83975430 + MER53 DNA DNA 1 79 -110 496 177 108 15 chr13 35769538 35769668 -83975230 - L1MB3 LINE L1 0 6183 6042 273 197 141 0 chr13 35769760 35769831 -83975067 - MER53 DNA DNA -108 81 1 2602 37 0 0 chr13 35769966 35770266 -83974632 + AluY SINE Alu 1 300 -11 2241 65 4 0 chr13 35771030 35771309 -83973589 + AluSx SINE Alu 1 280 -32 1161 212 90 34 chr13 35771419 35771797 -83973101 - Charlie4a DNA MER1_type -47 461 63 423 284 194 27 chr13 35773272 35773494 -83971404 - MIR SINE MIR 0 262 4 534 248 55 76 chr13 35773561 35773776 -83971122 - MIR SINE MIR -18 244 33 2362 81 0 0 chr13 35773776 35774074 -83970824 - AluSx SINE Alu -14 298 1 534 248 55 76 chr13 35774074 35774096 -83970802 - MIR SINE MIR -229 33 12 187 267 50 33 chr13 35774160 35774220 -83970678 + MER5B DNA MER1_type 100 160 -18 1579 194 17 7 chr13 35774736 35775029 -83969869 + AluJo SINE Alu 1 296 -16 2198 107 10 3 chr13 35775487 35775787 -83969111 + AluSc SINE Alu 1 302 -7 433 215 50 41 chr13 35777586 35777707 -83967191 + MIR SINE MIR 111 232 -30 1415 97 5 5 chr13 35778375 35778560 -83966338 + AluSx SINE Alu 1 185 -127 331 148 0 19 chr13 35778896 35778950 -83965948 - MER5A DNA MER1_type 0 189 137 271 258 58 67 chr13 35781044 35781164 -83963734 - MIR3 SINE MIR -25 183 65 2911 220 57 59 chr13 35782507 35783578 -83961320 + L1M4 LINE L1 4114 5182 -964 1945 234 173 4 chr13 35783975 35784692 -83960206 + L1MB2 LINE L1 2248 3085 -3061 4153 163 56 48 chr13 35784924 35786049 -83958849 + L1MB2 LINE L1 5002 6139 -32 2110 98 14 20 chr13 35786049 35786345 -83958553 + AluSc SINE Alu 1 294 -15 21 0 0 0 chr13 35786372 35786393 -83958505 + AT_rich Low_complexity Low_complexity 1 21 0 407 205 36 0 chr13 35786578 35786661 -83958237 + MER5B DNA MER1_type 92 177 -1 281 275 136 34 chr13 35786823 35786959 -83957939 + MIR SINE MIR 8 151 -61 285 287 85 0 chr13 35787324 35787418 -83957480 - L2 LINE L2 -4 3309 3208 32 0 0 0 chr13 35788011 35788043 -83956855 + AT_rich Low_complexity Low_complexity 1 32 0 1742 176 28 0 chr13 35788565 35788849 -83956049 - AluJb SINE Alu -20 292 1 370 213 287 0 chr13 35789878 35790000 -83954898 - MER58C DNA MER1_type -2 213 57 928 237 58 13 chr13 35790781 35791005 -83953893 - MIR SINE MIR -20 242 9 188 33 0 33 chr13 35792866 35792896 -83952002 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chr13 35794403 35794445 -83950453 + AT_rich Low_complexity Low_complexity 1 42 0 2259 108 0 0 chr13 35794845 35795142 -83949756 - AluSx SINE Alu -15 297 1 326 226 107 12 chr13 35795887 35795971 -83948927 - MIR3 SINE MIR -6 202 111 677 124 39 8 chr13 35797029 35797158 -83947740 + L1PA16 LINE L1 6034 6166 0 456 290 79 8 chr13 35798531 35798733 -83946165 - MIR SINE MIR -37 225 13 21 0 0 0 chr13 35798842 35798863 -83946035 + AT_rich Low_complexity Low_complexity 1 21 0 2207 94 23 16 chr13 35799147 35799456 -83945442 + AluSq SINE Alu 1 311 -2 444 331 29 29 chr13 35800294 35800469 -83944429 - MER5A DNA MER1_type -14 175 1 * 541 183 183 0 chr13 35800467 35800620 -83944278 + MER5A DNA MER1_type 4 188 -1 24 67 0 0 chr13 35801032 35801077 -83943821 + AT_rich Low_complexity Low_complexity 1 45 0 346 323 35 72 chr13 35801884 35802231 -83942667 - L2 LINE L2 -13 3300 2967 2372 190 16 5 chr13 35802235 35802682 -83942216 + L1MCa LINE L1 21 472 -5954 33 25 0 0 chr13 35803034 35803074 -83941824 + AT_rich Low_complexity Low_complexity 1 40 0 652 202 0 0 chr13 35803124 35803238 -83941660 + FLAM_C SINE Alu 6 119 -24 12673 132 63 17 chr13 35803698 35805425 -83939473 + Tigger1 DNA MER2_type 24 1873 -545 2035 115 0 39 chr13 35805425 35805730 -83939168 - AluSg SINE Alu -16 294 2 12673 132 63 17 chr13 35805730 35806173 -83938725 + Tigger1 DNA MER2_type 1873 2294 -124 393 135 0 95 chr13 35806173 35806228 -83938670 + Tigger2 DNA MER2_type 1 49 -2669 2218 106 10 0 chr13 35806228 35806520 -83938378 - AluSc SINE Alu -14 295 1 393 135 0 95 chr13 35806520 35806538 -83938360 + Tigger2 DNA MER2_type 49 67 -2651 * 2144 153 88 10 chr13 35806524 35806814 -83938084 + Tigger2 DNA MER2_type 2267 2601 -117 1800 174 7 7 chr13 35806814 35807113 -83937785 + AluJb SINE Alu 2 300 -12 2144 153 88 10 chr13 35807113 35807240 -83937658 + Tigger2 DNA MER2_type 2601 2717 -1 737 192 0 0 chr13 35807241 35807366 -83937532 + Tigger1 DNA MER2_type 2293 2417 -1 443 259 54 9 chr13 35807408 35807520 -83937378 - L2 LINE L2 0 3313 3197 324 254 8 31 chr13 35807827 35807957 -83936941 - L1MC5 LINE L1 -543 7418 7292 581 258 67 21 chr13 35808127 35808367 -83936531 - L1MC5 LINE L1 -754 7207 6957 8023 116 44 9 chr13 35808588 35809846 -83935052 + HSMAR2 DNA Mariner 1 1301 -1 2312 90 7 3 chr13 35811138 35811439 -83933459 + AluY SINE Alu 1 302 -9 687 268 195 49 chr13 35811591 35812017 -83932881 - L2 LINE L2 -2 3311 2824 1595 303 133 25 chr13 35812101 35812766 -83932132 - L2 LINE L2 -885 2429 1625 1020 165 146 0 chr13 35812766 35812972 -83931926 - MER46A DNA MER2_type 0 236 1 1595 303 133 25 chr13 35812972 35813276 -83931622 - L2 LINE L2 -1689 1625 1355 401 136 0 0 chr13 35813560 35813619 -83931279 - AluJ/FRAM SINE Alu -25 287 229 328 313 81 38 chr13 35813792 35813952 -83930946 + L1M2 LINE L1 753 919 -5930 272 171 66 26 chr13 35814062 35814138 -83930760 + MER53 DNA DNA 1 79 -110 496 177 108 15 chr13 35814208 35814338 -83930560 - L1MB3 LINE L1 0 6183 6042 273 197 141 0 chr13 35814430 35814501 -83930397 - MER53 DNA DNA -108 81 1 2602 37 0 0 chr13 35814636 35814936 -83929962 + AluY SINE Alu 1 300 -11 2241 65 4 0 chr13 35815700 35815979 -83928919 + AluSx SINE Alu 1 280 -32 1161 212 90 34 chr13 35816089 35816467 -83928431 - Charlie4a DNA MER1_type -47 461 63 422 284 194 27 chr13 35817942 35818164 -83926734 - MIR SINE MIR 0 262 4 538 291 37 16 chr13 35818231 35818420 -83926478 - MIR SINE MIR -18 244 52 2346 87 0 3 chr13 35818446 35818744 -83926154 - AluY SINE Alu -14 297 1 602 297 42 17 chr13 35818855 35819209 -83925689 - HAL1 LINE L1 -918 1589 1227 2306 105 0 0 chr13 35819444 35819739 -83925159 - AluSq SINE Alu -18 295 1 250 254 16 32 chr13 35821434 35821497 -83923401 - L2 LINE L2 -2 3311 3250 243 317 0 0 chr13 35821697 35821757 -83923141 + L2 LINE L2 3213 3272 0 2290 126 0 0 chr13 35821774 35822084 -83922814 - AluSx SINE Alu -2 310 1 329 291 12 0 chr13 35822134 35822220 -83922678 - L2 LINE L2 -1 3271 3185 2173 178 141 6 chr13 35822223 35822707 -83922191 + MER44D DNA MER2_type 2 605 0 456 141 12 0 chr13 35823341 35823426 -83921472 - L1MB8 LINE L1 0 6178 6093 294 90 0 115 chr13 35823429 35823478 -83921420 - L1MB3 LINE L1 0 6183 6145 2113 113 14 0 chr13 35823478 35823769 -83921129 - AluSq SINE Alu -18 295 1 294 90 0 115 chr13 35823769 35823797 -83921101 - L1MB3 LINE L1 -38 6145 6115 250 113 0 0 chr13 35823802 35823855 -83921043 + AluS SINE Alu 5 57 -251 248 200 36 0 chr13 35823958 35824013 -83920885 - AluSp SINE Alu -133 170 114 1911 113 50 0 chr13 35824021 35824303 -83920595 + AluSx SINE Alu 1 296 -16 1889 194 101 6 chr13 35824303 35824778 -83920120 - L1MB4 LINE L1 -59 6121 5602 1738 179 24 14 chr13 35824787 35825084 -83919814 - AluJo SINE Alu -12 300 1 574 297 28 11 chr13 35825212 35825394 -83919504 + MER5A DNA MER1_type 4 188 -1 349 283 30 10 chr13 35826750 35826849 -83918049 - MER5A DNA MER1_type -80 109 9 349 93 27 107 chr13 35829085 35829160 -83915738 + 5S rRNA rRNA 49 117 -4 * 686 89 10 0 chr13 35829124 35829225 -83915673 - MER41B LTR ERV1 -533 102 1 1734 196 83 10 chr13 35829637 35830035 -83914863 - MSTB1 LTR MaLR -5 427 1 346 281 244 12 chr13 35830504 35830746 -83914152 - L2 LINE L2 0 3313 3016 3840 124 19 20 chr13 35830746 35831382 -83913516 - MER41B LTR ERV1 0 635 1 409 176 10 29 chr13 35831411 35831513 -83913385 - MER4B LTR ERV1 -510 100 1 292 219 24 61 chr13 35831513 35831595 -83913303 - L2 LINE L2 -592 2722 2644 2124 116 7 3 chr13 35831596 35831888 -83913010 - AluSx SINE Alu -15 297 5 1092 161 78 0 chr13 35831940 35832075 -83912823 - L1MA9 LINE L1 -383 5929 5769 398 36 18 0 chr13 35832075 35832131 -83912767 + (CA)n Simple_repeat Simple_repeat 2 58 0 1092 161 78 0 chr13 35832131 35832213 -83912685 - L1MA9 LINE L1 -543 5769 5695 216 170 75 57 chr13 35832317 35832370 -83912528 - MIR SINE MIR -98 164 111 804 128 0 0 chr13 35832747 35832856 -83912042 + AluSg/x SINE Alu 186 294 -18 2418 68 0 13 chr13 35833424 35833735 -83911163 + AluY SINE Alu 1 307 -4 3383 101 29 29 chr13 35833998 35834186 -83910712 - MER41A LTR ERV1 0 554 367 2355 96 3 0 chr13 35834186 35834498 -83910400 - AluSp SINE Alu 0 313 1 3383 101 29 29 chr13 35834498 35834853 -83910045 - MER41A LTR ERV1 -186 368 11 322 265 45 8 chr13 35835033 35835165 -83909733 + L1ME4a LINE L1 5805 5941 -180 1067 178 5 11 chr13 35835165 35835350 -83909548 + AluJo SINE Alu 1 184 -128 280 181 118 94 chr13 35835358 35835485 -83909413 + L1ME4a LINE L1 5960 6089 -32 598 237 6 41 chr13 35835701 35835870 -83909028 - MER91B DNA MER1_type -1 189 27 22 35 0 0 chr13 35835941 35835970 -83908928 + AT_rich Low_complexity Low_complexity 1 29 0 330 253 129 17 chr13 35835998 35836239 -83908659 - L1MC5 LINE L1 -51 7910 7643 2327 85 0 7 chr13 35837072 35837377 -83907521 + AluSq SINE Alu 1 303 -10 361 230 240 0 chr13 35837378 35837478 -83907420 + MER5A DNA MER1_type 66 189 0 1575 141 119 15 chr13 35838895 35839164 -83905734 - AluSx SINE Alu -1 311 15 2284 95 3 16 chr13 35839504 35839808 -83905090 + AluSx SINE Alu 1 300 -12 2239 125 0 0 chr13 35839988 35840299 -83904599 - AluSx SINE Alu -1 311 1 2254 101 0 0 chr13 35840885 35841171 -83903727 - AluSg SINE Alu -24 286 1 225 196 36 18 chr13 35842486 35842542 -83902356 + MIR3 SINE MIR 151 207 -1 * 4145 265 171 5 chr13 35842539 35843497 -83901401 - L2 LINE L2 0 3313 2515 2313 104 3 7 chr13 35843497 35843806 -83901092 + AluSx SINE Alu 1 308 -4 4145 265 171 5 chr13 35843806 35844679 -83900219 - L2 LINE L2 -798 2515 1190 22 0 0 0 chr13 35844810 35844832 -83900066 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr13 35844879 35844900 -83899998 + (GA)n Simple_repeat Simple_repeat 2 22 0 206 311 122 0 chr13 35844988 35845062 -83899836 - L2 LINE L2 -27 3286 3204 366 289 31 23 chr13 35847168 35847296 -83897602 - L2 LINE L2 -1 3312 3184 2390 74 20 0 chr13 35847679 35847975 -83896923 - AluSc SINE Alu -7 302 1 850 228 0 12 chr13 35848053 35848220 -83896678 + FRAM SINE Alu 2 166 0 189 0 0 0 chr13 35848837 35848858 -83896040 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 222 171 0 0 chr13 35849041 35849082 -83895816 + (TA)n Simple_repeat Simple_repeat 2 42 0 182 303 15 30 chr13 35849971 35850037 -83894861 + L2 LINE L2 3144 3208 -64 270 233 164 43 chr13 35850218 35850334 -83894564 - L2 LINE L2 -56 3257 3128 414 19 0 19 chr13 35850736 35850788 -83894110 + AluYb8 SINE Alu 241 291 -27 2189 112 3 10 chr13 35851312 35851617 -83893281 + AluSx SINE Alu 1 303 -9 936 214 0 5 chr13 35851617 35851832 -83893066 + L1 LINE L1 5164 5377 -769 4348 132 15 16 chr13 35851938 35852671 -83892227 + HSMAR2 DNA Mariner 570 1301 -1 21 0 0 0 chr13 35854299 35854320 -83890578 + AT_rich Low_complexity Low_complexity 1 21 0 670 244 52 14 chr13 35856402 35856615 -83888283 - MER58A DNA MER1_type -1 223 3 354 216 43 58 chr13 35856667 35856806 -83888092 + L1MA10 LINE L1 6196 6332 -2 442 234 58 23 chr13 35859108 35859279 -83885619 - MER104 DNA MER2_type 0 180 4 2220 122 3 0 chr13 35859451 35859763 -83885135 + AluSq SINE Alu 1 313 0 646 161 89 16 chr13 35860232 35860356 -83884542 + FLAM_C SINE Alu 1 133 0 6712 69 18 6 chr13 35862018 35863698 -83881200 + L1PA8 LINE L1 4482 6172 0 198 0 0 0 chr13 35863725 35863747 -83881151 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 18233 31 3 0 chr13 35863800 35866773 -83878125 + L1PA4 LINE L1 3176 6155 0 418 234 90 30 chr13 35866802 35866969 -83877929 - MER5B DNA MER1_type 0 178 2 1720 162 26 23 chr13 35867011 35867319 -83877579 + AluJb SINE Alu 1 309 -3 201 74 0 0 chr13 35867519 35867546 -83877352 + (A)n Simple_repeat Simple_repeat 1 27 0 660 138 14 65 chr13 35867548 35867686 -83877212 + AluJb SINE Alu 2 132 -180 2202 116 0 0 chr13 35867686 35867988 -83876910 + AluSx SINE Alu 1 302 -10 1778 103 57 21 chr13 35867991 35868273 -83876625 + AluSq SINE Alu 1 292 -21 193 241 126 46 chr13 35868612 35868699 -83876199 - MIR SINE MIR -92 170 77 2122 120 7 3 chr13 35870133 35870441 -83874457 - AluSx SINE Alu -3 309 1 251 182 91 0 chr13 35870504 35870559 -83874339 + L1MB5 LINE L1 6047 6106 -68 3442 179 56 16 chr13 35870562 35871485 -83873413 - L1MB5 LINE L1 -128 6046 5086 591 178 99 20 chr13 35871513 35871665 -83873233 - MLT1B LTR MaLR -219 171 8 4128 235 66 66 chr13 35871671 35871923 -83872975 - MLT1B-int LTR MaLR -6 1365 1114 180 0 0 0 chr13 35871923 35871943 -83872955 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4128 235 66 66 chr13 35871943 35872277 -83872621 - MLT1B-int LTR MaLR -257 1114 781 2225 121 0 0 chr13 35872277 35872574 -83872324 + AluSg SINE Alu 1 297 -13 4128 235 66 66 chr13 35872574 35873351 -83871547 - MLT1B-int LTR MaLR -589 782 1 1116 209 48 129 chr13 35873355 35873775 -83871123 - MLT1B LTR MaLR -4 386 1 799 201 62 84 chr13 35873776 35873859 -83871039 - L1MB5 LINE L1 -1750 4396 4313 1619 191 124 14 chr13 35873859 35874214 -83870684 - MSTD LTR MaLR -2 394 1 799 201 62 84 chr13 35874214 35874404 -83870494 - L1MB5 LINE L1 -1833 4313 4129 2036 169 24 0 chr13 35874410 35874742 -83870156 - MLT2C1 LTR ERVL -57 340 1 278 211 40 138 chr13 35874747 35874899 -83869999 + MLT1I LTR MaLR 1 137 -272 477 34 0 0 chr13 35874974 35875033 -83869865 + (TG)n Simple_repeat Simple_repeat 2 60 0 778 217 50 97 chr13 35875037 35875327 -83869571 + L1MC5 LINE L1 6864 7020 -788 2198 121 7 0 chr13 35875327 35875634 -83869264 - AluSq SINE Alu -4 309 1 778 217 50 97 chr13 35875634 35875784 -83869114 + L1MC5 LINE L1 7020 7176 -632 491 149 56 28 chr13 35875866 35875973 -83868925 + L1MC5 LINE L1 7279 7388 -573 1069 147 0 0 chr13 35876844 35877007 -83867891 - AluSq SINE Alu -17 296 134 483 33 0 0 chr13 35877013 35877074 -83867824 + (TATG)n Simple_repeat Simple_repeat 2 62 0 2198 105 0 10 chr13 35877074 35877361 -83867537 - AluSx SINE Alu -26 286 1 1315 175 72 73 chr13 35877405 35877779 -83867119 + MER67C LTR ERV1 15 408 -243 5277 169 16 4 chr13 35877819 35878803 -83866095 + L1MB4 LINE L1 5184 6179 -1 433 224 95 0 chr13 35878834 35878950 -83865948 + MER67D LTR ERV1 380 506 -8 5360 203 85 60 chr13 35879695 35881354 -83863544 + MER52A LTR ERV1 55 1755 0 1795 153 139 44 chr13 35882207 35882574 -83862324 - MER93a LTR ERV1 0 402 1 444 307 130 38 chr13 35882609 35882770 -83862128 - L2 LINE L2 0 3313 3168 2137 223 116 2 chr13 35882770 35883286 -83861612 - MER90 LTR ERV1 0 575 1 444 307 130 38 chr13 35883286 35883547 -83861351 - L2 LINE L2 -145 3168 2852 2165 102 20 0 chr13 35883702 35883995 -83860903 - AluSq SINE Alu -14 299 1 228 200 175 13 chr13 35884206 35884301 -83860597 + L2 LINE L2 2818 2930 -342 671 193 128 100 chr13 35884321 35884773 -83860125 - L1MC5 LINE L1 -223 7738 7274 190 326 113 28 chr13 35885699 35885840 -83859058 + MIR SINE MIR 33 185 -77 236 241 0 0 chr13 35885841 35885895 -83859003 + L2 LINE L2 2041 2094 -1220 3061 172 28 7 chr13 35885908 35886699 -83858199 - L1MB7 LINE L1 -356 5828 5025 1073 183 44 21 chr13 35886780 35887142 -83857756 + MER63 DNA MER1_type 4 435 -626 1261 178 5 5 chr13 35887154 35887368 -83857530 + MER63 DNA MER1_type 675 888 -173 1213 204 92 32 chr13 35887426 35887740 -83857158 + MER2 DNA MER2_type 7 339 -6 1995 125 14 3 chr13 35887765 35888054 -83856844 - AluSx SINE Alu -20 292 1 800 173 5 70 chr13 35888054 35888174 -83856724 + MER63 DNA MER1_type 889 995 -67 2016 131 3 0 chr13 35888174 35888485 -83856413 - AluSx SINE Alu 0 312 1 800 173 5 70 chr13 35888485 35888548 -83856350 + MER63 DNA MER1_type 995 1061 -1 193 320 103 57 chr13 35888799 35888974 -83855924 - MER5A DNA MER1_type 0 189 7 302 115 19 0 chr13 35889202 35889254 -83855644 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 190 356 0 0 chr13 35889279 35889324 -83855574 - L2 LINE L2 -86 3186 3142 1471 171 103 40 chr13 35889565 35889886 -83855012 - MER2 DNA MER2_type -1 343 3 2301 107 0 0 chr13 35890026 35890326 -83854572 - AluSx SINE Alu -12 300 1 25 0 0 0 chr13 35890434 35890459 -83854439 + AT_rich Low_complexity Low_complexity 1 25 0 192 318 117 103 chr13 35890953 35891176 -83853722 + MIR SINE MIR 37 262 0 182 322 81 35 chr13 35891340 35891427 -83853471 - L2 LINE L2 -154 3118 3028 27 0 0 0 chr13 35891983 35892010 -83852888 + AT_rich Low_complexity Low_complexity 1 27 0 2166 104 0 3 chr13 35892881 35893170 -83851728 + AluSq SINE Alu 12 299 -14 223 354 10 10 chr13 35893200 35893299 -83851599 + L3b LINE CR1 1374 1472 -111 2150 106 3 7 chr13 35893363 35893655 -83851243 - AluSx SINE Alu -21 291 1 186 420 58 14 chr13 35893794 35893932 -83850966 + L2 LINE L2 3107 3250 -22 202 359 46 53 chr13 35894206 35894337 -83850561 + L2 LINE L2 3132 3261 -11 320 170 19 0 chr13 35894486 35894539 -83850359 - MER46C DNA MER2_type -10 328 275 377 121 15 15 chr13 35894575 35894641 -83850257 - MER46C DNA MER2_type -178 160 95 1191 118 0 6 chr13 35894868 35895037 -83849861 + AluSg SINE Alu 1 168 -142 1803 106 0 0 chr13 35895631 35895876 -83849022 - AluSx SINE Alu -67 245 1 21 0 0 0 chr13 35896077 35896098 -83848800 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr13 35896376 35896419 -83848479 + AT_rich Low_complexity Low_complexity 1 43 0 2016 177 39 14 chr13 35896566 35896922 -83847976 - MLT1A1 LTR MaLR 0 365 1 3718 64 14 0 chr13 35897064 35897502 -83847396 - MLT2A1 LTR ERVL 0 444 1 788 321 49 49 chr13 35898052 35898482 -83846416 - MLT1K LTR MaLR -3 585 156 1219 130 6 0 chr13 35899246 35899423 -83845475 - AluSg/x SINE Alu -11 301 124 2056 191 27 12 chr13 35899860 35900217 -83844681 + MLT2D LTR ERVL 1 351 -63 543 53 0 0 chr13 35900217 35900292 -83844606 + (TC)n Simple_repeat Simple_repeat 2 76 0 * 612 0 0 0 chr13 35900291 35900359 -83844539 + (TA)n Simple_repeat Simple_repeat 1 68 0 2056 191 27 12 chr13 35900292 35900409 -83844489 + MLT2D LTR ERVL 351 414 0 3982 112 11 20 chr13 35900584 35901137 -83843761 + LTR14 LTR ERVK 1 548 0 694 241 113 108 chr13 35901903 35901938 -83842960 + MLT1F1 LTR MaLR 15 48 -494 1781 131 91 0 chr13 35901938 35902212 -83842686 - AluSx SINE Alu -13 299 1 694 241 113 108 chr13 35902212 35902637 -83842261 + MLT1F1 LTR MaLR 48 477 -65 231 199 211 70 chr13 35902946 35903102 -83841796 + MIR SINE MIR 85 262 0 235 337 77 36 chr13 35903157 35903353 -83841545 + L2 LINE L2 1989 2192 -1122 228 287 122 43 chr13 35904511 35904626 -83840272 + L2 LINE L2 2933 3056 -257 536 202 57 16 chr13 35904879 35905003 -83839895 - MER94 DNA DNA -4 130 2 1897 167 53 21 chr13 35905208 35905586 -83839312 - MLT1B LTR MaLR 0 390 1 2174 120 0 0 chr13 35905720 35906011 -83838887 - AluSx SINE Alu -21 291 1 23 33 0 0 chr13 35906083 35906113 -83838785 + AT_rich Low_complexity Low_complexity 1 30 0 1708 129 12 74 chr13 35906126 35906484 -83838414 + AluSx SINE Alu 1 312 0 561 295 155 14 chr13 35906747 35906954 -83837944 + MER115 DNA AcHobo 455 690 -3 2134 125 0 0 chr13 35906954 35907249 -83837649 - AluSx SINE Alu -17 295 1 334 286 204 10 chr13 35907262 35907468 -83837430 - MIR SINE MIR -14 248 3 802 264 338 6 chr13 35908719 35909193 -83835705 + L2 LINE L2 2319 2949 -365 280 141 98 7 chr13 35909241 35909322 -83835576 - MER92B LTR ERV1 -26 528 288 595 210 73 10 chr13 35909345 35909497 -83835401 - MER92B LTR ERV1 -389 165 5 392 182 114 0 chr13 35909953 35910041 -83834857 - Charlie1 DNA MER1_type -2336 425 328 542 105 324 0 chr13 35910057 35910162 -83834736 - MER21B LTR ERV1 -396 467 329 684 274 98 29 chr13 35910162 35910436 -83834462 + L2 LINE L2 3020 3312 -1 31 68 0 0 chr13 35911654 35911713 -83833185 + AT_rich Low_complexity Low_complexity 1 59 0 2071 113 7 7 chr13 35911905 35912197 -83832701 - AluSx SINE Alu -18 294 3 212 269 127 49 chr13 35916110 35916259 -83828639 - MIR SINE MIR -61 147 11 544 304 43 11 chr13 35917026 35917210 -83827688 - MLT1I LTR MaLR -18 391 202 383 276 39 31 chr13 35917334 35917461 -83827437 - MIR SINE MIR -105 157 30 309 335 14 91 chr13 35918012 35918221 -83826677 + L2 LINE L2 2897 3089 -183 298 104 21 0 chr13 35918383 35918431 -83826467 - L2 LINE L2 0 3313 3265 314 333 0 10 chr13 35918431 35918527 -83826371 - MIR SINE MIR -156 106 12 262 194 0 48 chr13 35918768 35918830 -83826068 - MER69 DNA AcHobo -5 2521 2463 282 29 0 0 chr13 35918830 35918865 -83826033 + (CAA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr13 35920850 35920879 -83824019 + AT_rich Low_complexity Low_complexity 1 29 0 464 268 0 36 chr13 35920879 35921047 -83823851 + L1M4 LINE L1 60 221 -6321 638 318 74 12 chr13 35921845 35922087 -83822811 - MIR SINE MIR 0 262 6 262 194 30 30 chr13 35922240 35922307 -83822591 - L1MC5 LINE L1 -50 7911 7845 841 211 13 0 chr13 35922497 35922653 -83822245 + FRAM SINE Alu 1 158 -18 1628 142 22 41 chr13 35922918 35923234 -83821664 - L1MC1 LINE L1 -1 6332 6023 362 332 164 0 chr13 35924044 35924252 -83820646 + MIR SINE MIR 2 243 -19 426 309 46 7 chr13 35925150 35925302 -83819596 + MIR SINE MIR 48 205 -57 965 269 28 8 chr13 35925571 35925949 -83818949 - LTR16A LTR ERVL -9 441 27 237 235 0 0 chr13 35925984 35926035 -83818863 - L3 LINE CR1 -192 1385 1335 342 258 45 0 chr13 35926133 35926265 -83818633 + (CATATA)n Simple_repeat Simple_repeat 2 139 0 477 272 66 33 chr13 35926353 35926566 -83818332 - L2 LINE L2 -947 2367 2148 438 300 69 6 chr13 35926636 35926796 -83818102 + Charlie8 DNA MER1_type 79 248 -2169 207 0 0 0 chr13 35926889 35926912 -83817986 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2209 41 0 0 chr13 35926912 35927179 -83817719 - L1PA5 LINE L1 -11 6143 5877 2173 93 3 23 chr13 35927299 35927601 -83817297 - AluSq SINE Alu -17 296 1 396 263 91 0 chr13 35927641 35927816 -83817082 - L2 LINE L2 -1404 1910 1720 640 226 0 0 chr13 35929025 35929140 -83815758 - FLAM_A SINE Alu -18 115 1 280 346 96 8 chr13 35929151 35929310 -83815588 - MER5A DNA MER1_type -3 186 6 213 261 0 31 chr13 35930165 35930230 -83814668 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 384 335 115 56 chr13 35930247 35930516 -83814382 - L2 LINE L2 -17 3255 2971 227 279 16 0 chr13 35930521 35930582 -83814316 - L1ME LINE L1 -451 5670 5609 47 53 0 0 chr13 35930583 35930658 -83814240 + AT_rich Low_complexity Low_complexity 1 75 0 2093 227 88 8 chr13 35930702 35931318 -83813580 - L1MC4 LINE L1 -140 7902 7238 500 156 161 13 chr13 35931333 35931474 -83813424 - L1MC4 LINE L1 -952 7074 6889 5610 169 26 8 chr13 35931884 35933932 -83810966 - L1PA16 LINE L1 -9 6157 4077 398 195 133 23 chr13 35934005 35934133 -83810765 - L1ME LINE L1 -422 5699 5558 1787 156 3 3 chr13 35934156 35934444 -83810454 - AluSx SINE Alu -24 288 1 367 289 128 36 chr13 35934462 35934909 -83809989 + L1MC/D LINE L1 4567 5054 -1092 1793 136 0 0 chr13 35934977 35935227 -83809671 + AluJb SINE Alu 14 263 -49 1141 224 211 9 chr13 35935281 35935727 -83809171 + L1MC/D LINE L1 5254 5789 -2019 777 263 14 30 chr13 35935843 35936075 -83808823 - L1MC4a LINE L1 -339 5822 5711 2204 105 7 3 chr13 35936075 35936371 -83808527 + AluSq SINE Alu 3 299 -14 777 263 14 30 chr13 35936371 35936402 -83808496 - L1MC4a LINE L1 -450 5711 5681 360 0 0 0 chr13 35937831 35937871 -83807027 + (CA)n Simple_repeat Simple_repeat 2 41 0 297 51 0 0 chr13 35937871 35937910 -83806988 + (CAT)n Simple_repeat Simple_repeat 1 39 0 326 332 91 53 chr13 35938598 35939052 -83805846 - L2 LINE L2 -5 3267 2795 189 0 0 0 chr13 35939169 35939190 -83805708 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 812 130 5 4 chr13 35939190 35939390 -83805508 - AluJb SINE Alu -33 279 2 270 231 96 39 chr13 35939972 35940076 -83804822 - LTR33A LTR ERVL -359 164 55 1979 189 7 55 chr13 35940264 35940698 -83804200 - MLT2D LTR ERVL -1 413 1 1586 213 135 77 chr13 35941543 35942157 -83802741 + MLT1E1 LTR MaLR 1 650 -4 1150 218 3 70 chr13 35942525 35942809 -83802089 + Tigger7 DNA MER2_type 2 266 -284 498 219 0 0 chr13 35942807 35942903 -83801995 + Tigger7 DNA MER2_type 2389 2484 -3 * 316 78 20 0 chr13 35943008 35943059 -83801839 - AluJo SINE Alu -1 301 250 1081 173 78 5 chr13 35943061 35943252 -83801646 - AluJo SINE Alu -107 205 1 2188 108 0 0 chr13 35943492 35943801 -83801097 - AluSc SINE Alu 0 312 4 314 377 9 9 chr13 35943821 35943927 -83800971 - MER91A DNA MER1_type -56 140 35 1045 127 61 0 chr13 35944190 35944355 -83800543 - MER58B DNA MER1_type 0 341 167 207 139 0 0 chr13 35946604 35946640 -83798258 + (T)n Simple_repeat Simple_repeat 1 36 0 798 178 51 13 chr13 35947559 35947716 -83797182 - FRAM SINE Alu -13 163 1 28 0 0 0 chr13 35948302 35948330 -83796568 + AT_rich Low_complexity Low_complexity 1 28 0 1368 232 146 31 chr13 35948452 35948905 -83795993 + MLT1D LTR MaLR 1 505 0 25 65 0 0 chr13 35948951 35948997 -83795901 + AT_rich Low_complexity Low_complexity 1 46 0 33 0 0 0 chr13 35949243 35949276 -83795622 + AT_rich Low_complexity Low_complexity 1 33 0 2054 163 20 45 chr13 35949975 35950375 -83794523 - MLT1B LTR MaLR 0 390 1 6511 42 4 0 chr13 35950681 35951468 -83793430 - L1PA5 LINE L1 -2 6152 5363 1228 302 19 29 chr13 35951468 35951846 -83793052 + LTR16C LTR ERVL 118 491 0 305 383 29 0 chr13 35951847 35952022 -83792876 + ERVL LTR ERVL 2 181 -4815 2507 119 3 13 chr13 35952081 35952460 -83792438 + THE1C LTR MaLR 1 375 0 275 247 26 13 chr13 35952846 35952923 -83791975 + ERVL LTR ERVL 596 673 -4323 311 309 105 42 chr13 35953167 35953358 -83791540 + ERVL LTR ERVL 783 985 -4011 4101 187 28 12 chr13 35953538 35954356 -83790542 + Tigger6a DNA MER2_type 24 854 -229 483 257 112 50 chr13 35954452 35954693 -83790205 + ERVL LTR ERVL 1718 1973 -3681 1758 191 2 72 chr13 35954730 35955149 -83789749 + MLT1B LTR MaLR 1 390 0 1108 310 104 19 chr13 35955157 35956017 -83788881 + ERVL LTR ERVL 2043 2978 -2018 1042 312 35 11 chr13 35956013 35956498 -83788400 + ERVL LTR ERVL 3863 4392 -1093 * 326 171 37 10 chr13 35956508 35956756 -83788142 + AluJo SINE Alu 12 302 0 451 324 43 61 chr13 35957243 35957687 -83787211 + ERVL LTR ERVL 4932 5367 -118 9123 161 4 40 chr13 35958410 35960184 -83784714 + L1P LINE L1 3575 5285 -861 1395 151 101 22 chr13 35961062 35961126 -83783772 - L1PB4 LINE L1 -7 6149 6091 2788 191 71 41 chr13 35961126 35961832 -83783066 - LTR8A LTR ERV1 0 727 1 1395 151 101 22 chr13 35961832 35962045 -83782853 - L1PB4 LINE L1 -65 6091 5850 3308 120 49 44 chr13 35962376 35962911 -83781987 + MER4D LTR ERV1 1 541 -362 1059 85 0 182 chr13 35962911 35963147 -83781751 - 7SK RNA RNA 0 193 1 3308 120 49 44 chr13 35963147 35963202 -83781696 + MER4D LTR ERV1 541 594 -309 1318 146 101 28 chr13 35963212 35963499 -83781399 + THE1C LTR MaLR 2 309 -66 1650 126 3 86 chr13 35963505 35963807 -83781091 + MER4E LTR ERV1 502 778 -1 2432 88 3 0 chr13 35964136 35964442 -83780456 - AluSx SINE Alu -5 307 1 341 211 172 72 chr13 35964664 35964844 -83780054 - MIR SINE MIR -9 253 56 765 228 29 68 chr13 35965124 35965155 -83779743 + LTR16C LTR ERVL 294 325 -166 2377 100 24 19 chr13 35965155 35965524 -83779374 + L1PA13 LINE L1 5790 6160 -3 765 228 29 68 chr13 35965524 35965698 -83779200 + LTR16C LTR ERVL 325 491 0 342 0 0 0 chr13 35966598 35966636 -83778262 + (CA)n Simple_repeat Simple_repeat 1 38 0 254 26 53 0 chr13 35966783 35966821 -83778077 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 15036 27 2 0 chr13 35967365 35969930 -83774968 - L1PA2 LINE L1 0 6155 3589 1062 191 31 12 chr13 35970039 35970296 -83774602 - L1MA7 LINE L1 -4 6287 6026 209 377 9 44 chr13 35970456 35970570 -83774328 + MIR SINE MIR 40 149 -59 314 276 60 17 chr13 35970665 35970781 -83774117 + L2 LINE L2 3193 3313 0 1639 156 48 0 chr13 35970785 35971074 -83773824 - MER58B DNA MER1_type 0 341 39 5786 58 46 3 chr13 35971078 35971819 -83773079 - LTR17 LTR ERV1 -7 773 1 510 122 12 0 chr13 35971900 35971982 -83772916 + L1PA16 LINE L1 6075 6157 -9 642 190 0 36 chr13 35972687 35972824 -83772074 - FLAM_A SINE Alu -1 132 1 612 368 85 29 chr13 35973193 35974049 -83770849 + L2 LINE L2 1777 2680 -634 615 279 40 40 chr13 35974126 35974356 -83770542 - MIR SINE MIR 0 262 30 207 0 0 0 chr13 35976518 35976541 -83768357 + (CAA)n Simple_repeat Simple_repeat 2 24 0 290 343 54 24 chr13 35977572 35977738 -83767160 + MER5B DNA MER1_type 3 173 -5 432 284 21 0 chr13 35978401 35978417 -83766481 - L1MA10 LINE L1 -1 6333 6318 2972 204 25 17 chr13 35978417 35979108 -83765790 - L1ME1 LINE L1 -11 6155 5460 1879 77 0 0 chr13 35979265 35979513 -83765385 - L1PA7 LINE L1 -5 6149 5902 1363 99 80 0 chr13 35979546 35979747 -83765151 + MER30 DNA MER1_type 14 230 0 578 296 38 23 chr13 35980644 35980906 -83763992 + HAL1b LINE L1 360 1666 -734 21 57 0 0 chr13 35981187 35981222 -83763676 + AT_rich Low_complexity Low_complexity 1 35 0 2482 170 21 6 chr13 35981259 35981729 -83763169 + L1MB1 LINE L1 5470 5946 -222 7635 252 18 23 chr13 35981747 35984164 -83760734 + L1P LINE L1 1708 4112 -2034 2156 100 147 44 chr13 35984277 35984714 -83760184 + L1PA12 LINE L1 5708 6168 0 26 0 0 0 chr13 35984818 35984844 -83760054 + AT_rich Low_complexity Low_complexity 1 26 0 30 45 0 0 chr13 35985025 35985069 -83759829 + AT_rich Low_complexity Low_complexity 1 44 0 280 373 121 25 chr13 35985302 35985398 -83759500 - L2 LINE L2 -337 2977 2892 1358 156 69 146 chr13 35985398 35985636 -83759262 - MLT1A2 LTR MaLR 0 374 178 276 30 0 0 chr13 35985636 35985669 -83759229 + (GA)n Simple_repeat Simple_repeat 2 34 0 1358 156 69 146 chr13 35985669 35985835 -83759063 - MLT1A2 LTR MaLR -196 178 1 280 373 121 25 chr13 35985835 35986210 -83758688 - L2 LINE L2 -422 2892 2461 7803 184 27 18 chr13 35987781 35988735 -83756163 + L1PA13 LINE L1 2954 3932 -2214 2030 134 0 3 chr13 35988735 35989048 -83755850 + AluSx SINE Alu 1 312 0 7803 184 27 18 chr13 35989048 35989760 -83755138 + L1PA13 LINE L1 3932 4636 -1510 3096 128 16 6 chr13 35989767 35990273 -83754625 + L1PA13 LINE L1 5649 6159 -4 208 299 104 0 chr13 35993135 35993212 -83751686 - L2 LINE L2 -4 3309 3225 1295 145 47 0 chr13 35993638 35993872 -83751026 - L1MA4A LINE L1 0 6303 6059 3739 185 26 49 chr13 35993878 35994791 -83750107 - L1MB7 LINE L1 0 6184 5293 5213 121 88 0 chr13 35994798 35995650 -83749248 - L1PA16 LINE L1 -9 6860 5995 427 39 0 0 chr13 35995650 35995702 -83749196 - AluSp/q SINE Alu -31 282 231 1139 201 19 8 chr13 35995813 35996081 -83748817 - L1PA16 LINE L1 -927 5922 5652 9447 168 48 12 chr13 35996084 35996851 -83748047 - L1PA16 LINE L1 -4293 2556 1818 180 0 0 0 chr13 35996851 35996871 -83748027 + (TA)n Simple_repeat Simple_repeat 2 21 0 9447 168 48 12 chr13 35996871 35998492 -83746406 - L1PA16 LINE L1 -5031 1818 2 1271 197 11 5 chr13 35998499 35998815 -83746083 - L1MB7 LINE L1 -812 5309 4992 26816 40 39 2 chr13 35998916 36002291 -83742607 - L1P LINE L1 -2646 3500 3 201 239 0 42 chr13 36002295 36002366 -83742532 + T-rich Low_complexity Low_complexity 5 72 0 275 271 47 0 chr13 36002529 36002636 -83742262 - L1ME LINE L1 -295 5875 5764 237 248 132 11 chr13 36002775 36002910 -83741988 - L1ME LINE L1 -758 5601 5437 390 283 91 20 chr13 36003004 36003202 -83741696 - L1ME LINE L1 -807 5339 5128 235 234 0 0 chr13 36003237 36003284 -83741614 - FRAM SINE Alu -11 152 106 525 180 0 0 chr13 36003396 36003485 -83741413 - FRAM SINE Alu -68 108 20 1009 168 55 0 chr13 36003492 36003712 -83741186 - L1MB2 LINE L1 -2 6169 5938 29 0 0 0 chr13 36003712 36003741 -83741157 + AT_rich Low_complexity Low_complexity 1 29 0 3058 135 57 4 chr13 36003745 36004270 -83740628 - L1PA16 LINE L1 -22 6144 5592 1879 207 30 17 chr13 36004264 36004733 -83740165 - L1 LINE L1 -1446 4700 4226 * 406 304 52 36 chr13 36055087 36055658 -83689240 + L1ME3A LINE L1 5260 5873 -297 186 43 0 0 chr13 36055702 36055725 -83689173 + (TA)n Simple_repeat Simple_repeat 2 24 0 7407 42 0 0 chr13 36055740 36056871 -83688027 + L1PA5 LINE L1 5020 6150 -4 2375 60 0 0 chr13 36056984 36057300 -83687598 - AluY SINE Alu 0 316 1 217 227 27 13 chr13 36057614 36057689 -83687209 + (TA)n Simple_repeat Simple_repeat 2 77 0 27 49 0 0 chr13 36057885 36057926 -83686972 + AT_rich Low_complexity Low_complexity 1 41 0 676 307 98 17 chr13 36058391 36059033 -83685865 - L1MEc LINE L1 -4683 1713 1020 21 71 0 0 chr13 36060561 36060603 -83684295 + AT_rich Low_complexity Low_complexity 1 42 0 2543 167 34 85 chr13 36061508 36061612 -83683286 - LTR9 LTR ERV1 0 612 504 1858 122 7 11 chr13 36061612 36061919 -83682979 + AluSc SINE Alu 1 306 0 2543 167 34 85 chr13 36061919 36062458 -83682440 - LTR9 LTR ERV1 -108 504 1 429 20 0 0 chr13 36063709 36063759 -83681139 + (TG)n Simple_repeat Simple_repeat 2 51 0 854 265 43 12 chr13 36064044 36064297 -83680601 - MIR SINE MIR 0 262 2 2135 128 0 0 chr13 36064551 36064848 -83680050 - AluSx SINE Alu -15 297 1 227 357 22 0 chr13 36064848 36064940 -83679958 - MER5A DNA MER1_type -49 140 36 1132 82 0 0 chr13 36065498 36065633 -83679265 + AluSq/x SINE Alu 2 136 -177 2085 129 3 3 chr13 36065633 36065943 -83678955 + AluSx SINE Alu 1 310 -2 2262 50 50 20 chr13 36066302 36066600 -83678298 + AluY SINE Alu 1 307 -4 4555 138 5 19 chr13 36067888 36068644 -83676254 - L1MC1 LINE L1 -1 6612 5867 2123 111 10 10 chr13 36068649 36068956 -83675942 + AluSx SINE Alu 1 307 -5 450 127 0 0 chr13 36068956 36069027 -83675871 + (GA)n Simple_repeat Simple_repeat 1 71 0 1877 142 43 33 chr13 36069027 36069442 -83675456 - L1MC1 LINE L1 -742 5871 5449 5763 232 48 4 chr13 36069557 36071088 -83673810 - L1MC1 LINE L1 -1204 5222 3625 3947 216 31 35 chr13 36071596 36072961 -83671937 - L1MC1 LINE L1 -2792 3634 2265 2275 110 3 0 chr13 36072961 36073261 -83671637 + AluSp SINE Alu 1 301 -12 282 56 0 0 chr13 36073261 36073297 -83671601 + (TA)n Simple_repeat Simple_repeat 2 37 0 3947 216 31 35 chr13 36073297 36073531 -83671367 - L1MC1 LINE L1 -4159 2267 2038 967 164 223 50 chr13 36073544 36074027 -83670871 - LTR29 LTR ERV1 0 622 1 8646 184 77 44 chr13 36074028 36075453 -83669445 - L1MC1 LINE L1 -4413 2013 507 955 41 8 0 chr13 36075453 36075574 -83669324 + L1PA4 LINE L1 6034 6155 0 8646 184 77 44 chr13 36075574 36076092 -83668806 - L1MC1 LINE L1 -5919 507 7 223 278 22 0 chr13 36076740 36076830 -83668068 + T-rich Low_complexity Low_complexity 2 93 0 2127 105 14 3 chr13 36077126 36077422 -83667476 - AluSx SINE Alu -13 299 1 490 317 48 35 chr13 36077422 36077652 -83667246 + MLT1I LTR MaLR 176 408 -1 1655 259 111 9 chr13 36077972 36078529 -83666369 - L1ME3A LINE L1 -230 5940 5327 1209 188 150 11 chr13 36078531 36078797 -83666101 - MLT1D LTR MaLR -194 311 9 1570 219 33 22 chr13 36079321 36079682 -83665216 - MLT1A1 LTR MaLR 0 365 1 301 234 206 27 chr13 36079862 36079989 -83664909 + MIR3 SINE MIR 15 173 -89 397 288 66 54 chr13 36080109 36080508 -83664390 - MLT1K LTR MaLR -49 539 106 592 291 60 5 chr13 36081981 36082180 -83662718 + MIR SINE MIR 53 262 0 563 310 88 0 chr13 36082189 36082428 -83662470 + MIR SINE MIR 3 262 0 553 262 204 16 chr13 36083277 36083468 -83661430 - MIR SINE MIR -10 252 26 2306 152 31 14 chr13 36083560 36083981 -83660917 + MSTC LTR MaLR 1 428 0 355 308 56 85 chr13 36084126 36084516 -83660382 + L1M4 LINE L1 497 875 -5667 1440 265 134 3 chr13 36084585 36085218 -83659680 + L1M4 LINE L1 879 1594 -4948 27 49 0 0 chr13 36085270 36085311 -83659587 + AT_rich Low_complexity Low_complexity 1 41 0 774 253 37 81 chr13 36085341 36085776 -83659122 + L1M4 LINE L1 2140 2555 -4270 231 337 0 10 chr13 36085777 36085878 -83659020 + (TA)n Simple_repeat Simple_repeat 1 100 0 2535 244 67 12 chr13 36085891 36086790 -83658108 + L1M4 LINE L1 2588 3495 -3149 2234 97 7 0 chr13 36088142 36088440 -83656458 - AluSg SINE Alu -10 300 1 31 0 0 0 chr13 36088449 36088480 -83656418 + AT_rich Low_complexity Low_complexity 1 31 0 312 276 9 67 chr13 36088843 36088948 -83655950 + L2 LINE L2 3174 3272 0 1812 154 165 8 chr13 36089105 36089475 -83655423 - MSTA LTR MaLR 0 428 1 2072 131 3 10 chr13 36089809 36090123 -83654775 + AluSx SINE Alu 1 312 0 2161 179 26 21 chr13 36090341 36090771 -83654127 - MSTB1 LTR MaLR 0 432 1 2091 115 16 20 chr13 36090984 36091512 -83653386 + L1P4 LINE L1 5056 5582 -579 606 255 170 12 chr13 36091846 36092093 -83652805 - LTR33 LTR ERVL -235 286 1 23 33 0 0 chr13 36092487 36092517 -83652381 + AT_rich Low_complexity Low_complexity 1 30 0 399 235 156 28 chr13 36092519 36092783 -83652115 + L1ME4a LINE L1 5332 5622 -499 358 277 71 13 chr13 36092804 36092959 -83651939 + L1ME4a LINE L1 5733 5896 -225 608 87 11 0 chr13 36093040 36093132 -83651766 + (TA)n Simple_repeat Simple_repeat 2 94 0 21 0 0 0 chr13 36093601 36093622 -83651276 + AT_rich Low_complexity Low_complexity 1 21 0 1757 196 57 40 chr13 36094195 36094650 -83650248 - MLT1C LTR MaLR -4 463 1 326 268 21 0 chr13 36094819 36094916 -83649982 - MER103 DNA DNA -1 165 67 1463 248 35 28 chr13 36096627 36097051 -83647847 + LTR40a LTR ERVL 1 427 -92 440 240 53 50 chr13 36097228 36097420 -83647478 - MLT1I LTR MaLR -2 407 266 443 276 80 72 chr13 36098070 36098441 -83646457 + L1M4 LINE L1 3190 3557 -2589 1946 178 87 12 chr13 36098441 36098868 -83646030 + MER65C LTR ERV1 1 459 -2 443 276 80 72 chr13 36098868 36098944 -83645954 + L1M4 LINE L1 3557 3631 -2515 1994 147 16 0 chr13 36098944 36099251 -83645647 - AluJo SINE Alu 0 312 1 443 276 80 72 chr13 36099251 36099371 -83645527 + L1M4 LINE L1 3631 3745 -2401 1622 242 80 54 chr13 36099383 36100105 -83644793 + Charlie2a DNA MER1_type 1604 2344 -518 42596 35 21 3 chr13 36100134 36106174 -83638724 + L1PA3 LINE L1 3 6153 -2 235 291 18 0 chr13 36106208 36106263 -83638635 - MER5A DNA MER1_type -127 62 7 555 297 137 5 chr13 36107226 36107445 -83637453 + MIR SINE MIR 14 261 -1 538 308 109 48 chr13 36107470 36107782 -83637116 - L2 LINE L2 0 3272 2942 232 273 15 15 chr13 36107955 36108021 -83636877 + L2 LINE L2 3206 3271 -1 896 148 23 115 chr13 36108880 36109097 -83635801 + MER67D LTR ERV1 1 197 -317 189 0 0 0 chr13 36109224 36109245 -83635653 + (A)n Simple_repeat Simple_repeat 1 21 0 193 50 25 50 chr13 36109802 36109842 -83635056 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 352 275 28 21 chr13 36110690 36110832 -83634066 + HAL1b LINE L1 55 197 -1151 250 245 0 0 chr13 36111926 36111979 -83632919 + L2 LINE L2 3253 3305 -8 1177 105 0 0 chr13 36113543 36113696 -83631202 + AluSx SINE Alu 1 153 -159 1376 201 38 100 chr13 36114925 36115007 -83629891 + MLT1C LTR MaLR 1 87 -380 1182 367 89 35 chr13 36115007 36115413 -83629485 + MSTA LTR MaLR 1 428 0 1376 201 38 100 chr13 36115413 36115436 -83629462 + MLT1C LTR MaLR 87 110 -357 2047 172 83 2 chr13 36115436 36115832 -83629066 + MSTA LTR MaLR 1 428 0 1376 201 38 100 chr13 36115832 36116212 -83628686 + MLT1C LTR MaLR 110 467 0 1931 99 102 3 chr13 36116409 36116692 -83628206 + AluSp SINE Alu 2 312 -1 347 307 112 57 chr13 36116827 36117176 -83627722 - L2 LINE L2 -675 2639 2272 2126 96 10 20 chr13 36118013 36118315 -83626583 + AluSq SINE Alu 1 299 -14 284 265 142 43 chr13 36119764 36120066 -83624832 - L1M4 LINE L1 -815 5829 5498 201 266 0 47 chr13 36120159 36120223 -83624675 - MIR SINE MIR -105 157 97 942 146 12 130 chr13 36120596 36120843 -83624055 + MER20 DNA MER1_type 2 219 0 2508 169 14 86 chr13 36120902 36121459 -83623439 + MLT2B1 LTR ERVL 1 517 -3 843 284 11 17 chr13 36122570 36122824 -83622074 - MIR SINE MIR -12 250 3 6207 74 6 28 chr13 36123817 36124685 -83620213 + SVA Other Other 535 1383 -3 9435 177 30 8 chr13 36124694 36126472 -83618426 - L1M4 LINE L1 -1287 5357 3531 1515 115 0 5 chr13 36126472 36126680 -83618218 + AluSp SINE Alu 107 313 0 9435 177 30 8 chr13 36126680 36126870 -83618028 - L1M4 LINE L1 -3113 3531 3347 3068 212 50 34 chr13 36126987 36127868 -83617030 - L1M4 LINE L1 -5009 1533 639 533 295 107 50 chr13 36129210 36129529 -83615369 - L2 LINE L2 -696 2618 2282 360 245 47 19 chr13 36129530 36129636 -83615262 + MER94 DNA DNA 1 109 -25 514 292 51 31 chr13 36129639 36129834 -83615064 - L2 LINE L2 -1014 2300 2102 21 57 0 0 chr13 36130004 36130039 -83614859 + AT_rich Low_complexity Low_complexity 1 35 0 351 211 0 0 chr13 36130198 36130269 -83614629 + MIR SINE MIR 139 209 -53 2634 88 8 0 chr13 36130292 36130644 -83614254 - THE1A LTR MaLR 0 355 1 24 32 0 0 chr13 36130658 36130689 -83614209 + AT_rich Low_complexity Low_complexity 1 31 0 403 269 134 17 chr13 36130689 36130808 -83614090 - FLAM_A SINE Alu 0 133 1 531 215 173 25 chr13 36130902 36131139 -83613759 - HAL1 LINE L1 -310 2197 1926 337 270 132 35 chr13 36131134 36131429 -83613469 - L1M4 LINE L1 -948 5198 4879 * 1134 264 64 30 chr13 36131571 36131977 -83612921 - HAL1 LINE L1 -613 1894 1475 667 278 137 38 chr13 36133042 36133517 -83611381 - HAL1 LINE L1 -1324 1183 662 352 323 54 27 chr13 36133628 36133761 -83611137 - HAL1 LINE L1 -2007 500 359 2384 78 0 0 chr13 36133761 36134056 -83610842 - AluY SINE Alu -16 295 1 352 323 54 27 chr13 36134056 36134108 -83610790 - HAL1 LINE L1 -2148 359 310 275 231 0 0 chr13 36134113 36134165 -83610733 + LTR30 LTR ERV1 1 52 -670 1532 111 193 182 chr13 36134165 36134688 -83610210 + LTR12 LTR ERV1 53 581 -133 203 399 54 14 chr13 36136722 36136870 -83608028 + L2 LINE L2 2906 3059 -213 254 174 43 43 chr13 36136929 36136998 -83607900 - MER116 DNA Mariner -4 76 8 24 53 0 0 chr13 36137349 36137387 -83607511 + AT_rich Low_complexity Low_complexity 1 38 0 275 348 57 8 chr13 36137576 36137820 -83607078 + L1ME LINE L1 5547 5802 -319 552 235 32 32 chr13 36138344 36138565 -83606333 - MER20B DNA MER1_type -30 753 533 1118 160 14 28 chr13 36139911 36140124 -83604774 + MER2 DNA MER2_type 1 210 -135 22 35 0 0 chr13 36140133 36140162 -83604736 + AT_rich Low_complexity Low_complexity 1 29 0 245 269 45 15 chr13 36140162 36140229 -83604669 + MER2 DNA MER2_type 269 337 -8 1210 145 36 0 chr13 36141552 36141773 -83603125 - L1MA8 LINE L1 -147 6144 5916 794 140 51 6 chr13 36141773 36141922 -83602976 + L1MA8 LINE L1 6124 6287 -4 1721 185 24 18 chr13 36142296 36142382 -83602516 - MER2 DNA MER2_type 0 344 260 2237 110 0 7 chr13 36142382 36142682 -83602216 + AluSx SINE Alu 1 298 -14 1721 185 24 18 chr13 36142682 36142936 -83601962 - MER2 DNA MER2_type -84 260 2 7016 170 158 43 chr13 36142938 36144512 -83600386 + MER52A LTR ERV1 1 1755 0 355 233 38 75 chr13 36144958 36145091 -83599807 + L2 LINE L2 3095 3222 -91 925 207 14 100 chr13 36145095 36145451 -83599447 - L1MA4 LINE L1 -2 6298 5980 319 360 20 28 chr13 36145514 36145767 -83599131 - L2 LINE L2 -1058 2256 2006 269 290 159 28 chr13 36147017 36147124 -83597774 + MIR SINE MIR 16 136 -72 293 296 227 8 chr13 36148310 36148442 -83596456 - MIR3 SINE MIR -10 198 38 427 328 31 13 chr13 36148750 36148979 -83595919 + L2 LINE L2 636 868 -2446 258 214 4 44 chr13 36149021 36149285 -83595613 + AluJo SINE Alu 1 282 -20 191 387 118 14 chr13 36149317 36149749 -83595149 + L2 LINE L2 976 1452 -1862 752 276 68 41 chr13 36149805 36150391 -83594507 - L1M4 LINE L1 -1175 4971 4370 979 332 98 33 chr13 36150524 36151096 -83593802 + L2 LINE L2 2368 2976 -338 348 220 220 10 chr13 36151098 36151198 -83593700 + L2 LINE L2 3190 3310 -3 1910 125 68 0 chr13 36151458 36151737 -83593161 - AluSx SINE Alu -14 298 1 321 318 70 23 chr13 36151747 36151876 -83593022 + L2 LINE L2 3171 3305 -8 28 0 0 0 chr13 36152734 36152762 -83592136 + AT_rich Low_complexity Low_complexity 1 28 0 279 79 0 0 chr13 36152910 36152948 -83591950 + (ATG)n Simple_repeat Simple_repeat 2 39 0 1675 264 30 6 chr13 36154041 36154542 -83590356 - L1M4 LINE L1 -1950 4196 3684 27 0 0 0 chr13 36154546 36154573 -83590325 + AT_rich Low_complexity Low_complexity 1 27 0 4373 193 16 33 chr13 36154575 36155593 -83589305 - L1MA8 LINE L1 -7 6284 5285 228 291 128 40 chr13 36155706 36155854 -83589044 + L2 LINE L2 2744 2904 -410 2626 43 0 0 chr13 36156089 36156393 -83588505 - AluY SINE Alu -7 304 1 2170 91 7 3 chr13 36156491 36156789 -83588109 + AluSq SINE Alu 12 310 -3 28 48 0 0 chr13 36157647 36157689 -83587209 + AT_rich Low_complexity Low_complexity 1 42 0 451 266 189 31 chr13 36158152 36158411 -83586487 - L2 LINE L2 0 3313 3014 1422 195 76 12 chr13 36158738 36159081 -83585817 + MLT1A1 LTR MaLR 1 365 0 255 292 104 0 chr13 36159848 36159944 -83584954 - MIR SINE MIR -38 224 119 393 349 77 40 chr13 36160082 36160526 -83584372 - L2 LINE L2 -1935 1379 920 2376 91 3 0 chr13 36160863 36161170 -83583728 + AluSg SINE Alu 1 308 -2 282 248 79 30 chr13 36161556 36161657 -83583241 + L2 LINE L2 3204 3309 -4 2375 262 88 52 chr13 36163249 36164661 -83580237 + HAL1 LINE L1 1022 2485 -22 596 169 17 8 chr13 36164663 36164781 -83580117 - AluJo SINE Alu -8 304 186 756 151 0 0 chr13 36164794 36164913 -83579985 - AluJo SINE Alu -192 120 2 32 26 0 0 chr13 36166210 36166249 -83578649 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr13 36167298 36167320 -83577578 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 36167383 36167406 -83577492 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 24 0 0 0 chr13 36167707 36167731 -83577167 + AT_rich Low_complexity Low_complexity 1 24 0 323 364 29 35 chr13 36168443 36168811 -83576087 + L2 LINE L2 2695 3056 -216 180 156 0 67 chr13 36169845 36169890 -83575008 - L2 LINE L2 0 3313 3272 247 270 70 9 chr13 36169996 36170111 -83574787 - L1MC4 LINE L1 -21 8021 7900 278 256 39 0 chr13 36170116 36170245 -83574653 + (TA)n Simple_repeat Simple_repeat 2 135 0 1811 221 86 60 chr13 36170248 36170926 -83573972 - L1MC4 LINE L1 -136 7906 7212 265 235 0 39 chr13 36171238 36171340 -83573558 + CT-rich Low_complexity Low_complexity 1 98 0 266 324 176 14 chr13 36171476 36171686 -83573212 + MIR SINE MIR 4 247 -15 184 358 46 28 chr13 36174217 36174326 -83570572 - L2 LINE L2 -12 3301 3191 616 195 0 16 chr13 36174521 36174649 -83570249 - MIR SINE MIR -6 256 131 298 270 146 0 chr13 36174907 36174996 -83569902 - MIR SINE MIR -147 115 14 1836 274 96 22 chr13 36178619 36179421 -83565477 - L1ME3A LINE L1 -38 6115 5255 225 0 0 0 chr13 36179510 36179535 -83565363 + (TG)n Simple_repeat Simple_repeat 2 26 0 1262 273 68 25 chr13 36179536 36179982 -83564916 - L1ME3A LINE L1 -1045 5084 4599 2233 115 0 3 chr13 36179982 36180277 -83564621 - AluSg SINE Alu -15 295 2 1262 273 68 25 chr13 36180277 36180496 -83564402 - L1ME3A LINE L1 -1530 4599 4391 2091 113 24 0 chr13 36180500 36180792 -83564106 - AluSx SINE Alu -13 299 1 1072 284 102 9 chr13 36180814 36181208 -83563690 - LTR16A LTR ERVL -2 455 7 2676 163 12 5 chr13 36181402 36181825 -83563073 - MSTB LTR MaLR 0 426 1 2277 207 32 98 chr13 36182062 36182783 -83562115 - LTR8 LTR ERV1 -18 673 1 441 212 122 14 chr13 36182868 36182889 -83562009 + L1M4 LINE L1 2902 2919 -3227 1563 173 0 4 chr13 36182889 36183143 -83561755 + AluJo SINE Alu 41 293 -19 441 212 122 14 chr13 36183143 36183343 -83561555 + L1M4 LINE L1 2919 3147 -2999 30 45 0 0 chr13 36183477 36183521 -83561377 + AT_rich Low_complexity Low_complexity 1 44 0 739 271 83 58 chr13 36183522 36183803 -83561095 - L1MEd LINE L1 -4576 1734 1461 2156 109 7 7 chr13 36183803 36184107 -83560791 - AluSx SINE Alu -8 304 1 739 271 83 58 chr13 36184107 36184734 -83560164 - L1MEd LINE L1 -4849 1461 758 182 313 60 0 chr13 36185415 36185482 -83559416 + L2 LINE L2 3201 3271 -1 553 324 22 0 chr13 36186100 36186285 -83558613 - MIR SINE MIR -14 248 60 31 96 0 0 chr13 36187366 36187460 -83557438 + AT_rich Low_complexity Low_complexity 1 94 0 21 57 0 0 chr13 36187511 36187546 -83557352 + AT_rich Low_complexity Low_complexity 1 35 0 526 280 36 68 chr13 36187571 36187821 -83557077 - MLT1J LTR MaLR -42 469 228 622 139 47 47 chr13 36187868 36187997 -83556901 - AluJb SINE Alu -2 310 182 966 114 8 0 chr13 36187997 36188129 -83556769 - AluSq/x SINE Alu -180 133 1 548 284 76 20 chr13 36188131 36188328 -83556570 - MLT1J LTR MaLR -296 215 8 1395 104 5 0 chr13 36189106 36189298 -83555600 + AluSg/x SINE Alu 114 306 -3 338 343 19 0 chr13 36189310 36189418 -83555480 + MER5A DNA MER1_type 79 188 -1 432 330 45 49 chr13 36190223 36190511 -83554387 + MLT1K LTR MaLR 166 452 -136 198 0 0 0 chr13 36190590 36190612 -83554286 + (T)n Simple_repeat Simple_repeat 1 22 0 333 0 0 0 chr13 36190629 36190666 -83554232 + (TG)n Simple_repeat Simple_repeat 2 38 0 333 303 67 17 chr13 36190756 36190875 -83554023 + L2 LINE L2 3180 3304 -9 649 315 68 64 chr13 36191750 36192268 -83552630 + MLT1L LTR MaLR 2 521 -94 2219 151 34 63 chr13 36193195 36193673 -83551225 + MLT2C2 LTR ERVL 1 464 0 195 42 0 0 chr13 36193806 36193830 -83551068 + (CA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr13 36195244 36195266 -83549632 + AT_rich Low_complexity Low_complexity 1 22 0 1597 276 3 11 chr13 36195605 36195971 -83548927 + L1PA15 LINE L1 1 363 -6424 5527 258 79 27 chr13 36196148 36199110 -83545788 - L1PA13 LINE L1 -3284 3513 377 * 12032 199 26 9 chr13 36199107 36202755 -83542143 + L1PA15 LINE L1 3109 6812 -4 2451 74 0 0 chr13 36202764 36203075 -83541823 + AluY SINE Alu 1 311 0 1163 175 52 22 chr13 36203682 36203978 -83540920 + MER67C LTR ERV1 1 309 -243 21 0 0 0 chr13 36204008 36204029 -83540869 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr13 36204381 36204414 -83540484 + (TG)n Simple_repeat Simple_repeat 2 34 0 2223 102 0 0 chr13 36204450 36204733 -83540165 - AluSq SINE Alu -29 284 2 519 191 227 12 chr13 36205017 36205317 -83539581 + LTR37A LTR ERV1 18 417 -9 2220 117 0 0 chr13 36205602 36205900 -83538998 + AluSq SINE Alu 1 298 -15 23 86 0 0 chr13 36206196 36206254 -83538644 + AT_rich Low_complexity Low_complexity 1 58 0 407 316 113 22 chr13 36206429 36206633 -83538265 + L1MC4a LINE L1 5326 5564 -606 2241 98 0 0 chr13 36206633 36206938 -83537960 - AluSq SINE Alu 0 305 1 407 316 113 22 chr13 36206938 36207007 -83537891 + L1MC4a LINE L1 5564 5625 -545 398 229 9 9 chr13 36207154 36207259 -83537639 + L1MC4a LINE L1 5732 5836 -1972 21 0 0 0 chr13 36207545 36207566 -83537332 + AT_rich Low_complexity Low_complexity 1 21 0 199 385 0 0 chr13 36207740 36207823 -83537075 + MIR SINE MIR 22 104 -158 195 269 131 117 chr13 36207972 36208117 -83536781 - L3b LINE CR1 -155 1428 1282 181 253 114 25 chr13 36208147 36208226 -83536672 - L3 LINE CR1 -159 1418 1333 254 263 13 115 chr13 36210325 36210481 -83534417 + MER70-int LTR ERVL 2511 2650 -3004 390 331 39 39 chr13 36210872 36211180 -83533718 + MER70-int LTR ERVL 1796 2103 -2920 1169 202 10 26 chr13 36211444 36211751 -83533147 - L1MA6 LINE L1 -1 6299 5998 2041 236 52 62 chr13 36211987 36213111 -83531787 - L1 LINE L1 -3231 3151 2030 1344 174 50 129 chr13 36213563 36214177 -83530721 - L1M4c LINE L1 -2948 3434 2869 905 219 72 100 chr13 36214204 36214792 -83530106 - L1M4c LINE L1 -4200 2184 1510 1425 252 97 16 chr13 36215304 36215728 -83529170 - L1MC4 LINE L1 -1065 6977 6520 1927 154 99 3 chr13 36215728 36216060 -83528838 + MLT2D LTR ERVL 1 364 -50 291 143 63 16 chr13 36216127 36216190 -83528708 + MLT2D LTR ERVL 455 520 0 450 222 10 0 chr13 36216200 36216299 -83528599 - L1MC4a LINE L1 -1366 6442 6343 3223 242 72 13 chr13 36216327 36218184 -83526714 - L1ME2 LINE L1 -36 6128 4166 735 286 105 18 chr13 36218183 36218686 -83526212 - L1ME2 LINE L1 -2766 3380 2834 * 1515 142 46 0 chr13 36218715 36218997 -83525901 - L1MA8 LINE L1 -10 6281 5987 1132 152 20 0 chr13 36219004 36219208 -83525690 - L1MA8 LINE L1 -447 5853 5646 716 261 93 0 chr13 36219221 36219501 -83525397 - L1ME2 LINE L1 -3327 2819 2514 288 265 174 0 chr13 36219965 36220063 -83524835 + MIR SINE MIR 31 145 -63 281 380 6 25 chr13 36220353 36220511 -83524387 - MIR3 SINE MIR -24 184 30 1261 219 7 14 chr13 36221569 36222013 -83522885 + MLT1D LTR MaLR 5 503 -2 445 302 82 6 chr13 36222025 36222207 -83522691 + LTR16C LTR ERVL 296 491 0 698 244 43 158 chr13 36222653 36223242 -83521656 - L2 LINE L2 -129 3184 2659 208 231 19 0 chr13 36223245 36223297 -83521601 - L2 LINE L2 -1898 1416 1364 652 211 15 25 chr13 36223297 36223496 -83521402 - L2 LINE L2 -2419 895 699 266 238 83 12 chr13 36224012 36224096 -83520802 - MIR SINE MIR -86 176 87 679 237 30 112 chr13 36224138 36224433 -83520465 - Zaphod DNA AcHobo -3759 272 2 761 288 72 79 chr13 36224545 36225100 -83519798 - L2 LINE L2 -622 2692 2142 376 271 19 9 chr13 36225122 36225229 -83519669 + L2 LINE L2 2531 2638 -676 250 281 141 59 chr13 36225223 36225263 -83519635 - L2 LINE L2 -2816 498 463 * 1553 207 25 17 chr13 36225263 36225625 -83519273 - MLT1A1 LTR MaLR 0 365 1 250 281 141 59 chr13 36225625 36225840 -83519058 - L2 LINE L2 -2851 463 222 449 313 13 9 chr13 36226026 36226168 -83518730 - MER5A DNA MER1_type -1 188 32 187 351 27 0 chr13 36226199 36226273 -83518625 - L2 LINE L2 -43 3270 3195 29 0 0 0 chr13 36226329 36226358 -83518540 + AT_rich Low_complexity Low_complexity 1 29 0 543 284 53 62 chr13 36228399 36228624 -83516274 + MIR SINE MIR 28 250 -12 3857 129 20 22 chr13 36229692 36230328 -83514570 + MER41B LTR ERV1 1 635 0 4002 111 12 7 chr13 36230374 36230967 -83513931 + MER4A LTR ERV1 1 596 -4 23 0 0 0 chr13 36230983 36231006 -83513892 + AT_rich Low_complexity Low_complexity 1 23 0 772 234 121 0 chr13 36232148 36232379 -83512519 - MIR SINE MIR -3 259 1 22 70 0 0 chr13 36232489 36232532 -83512366 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr13 36232806 36232833 -83512065 + AT_rich Low_complexity Low_complexity 1 27 0 2161 122 3 0 chr13 36233417 36233712 -83511186 - AluSg SINE Alu -14 296 1 1784 97 48 87 chr13 36233761 36234070 -83510828 + AluSx SINE Alu 1 297 -15 213 356 55 6 chr13 36234133 36234296 -83510602 - MIR SINE MIR -6 256 86 291 310 49 21 chr13 36234536 36234678 -83510220 - MLT1K LTR MaLR -266 322 177 216 200 0 0 chr13 36234724 36234789 -83510109 + (TG)n Simple_repeat Simple_repeat 1 65 0 2460 61 10 0 chr13 36235480 36235776 -83509122 - AluY SINE Alu -12 299 1 2167 136 0 3 chr13 36236321 36236630 -83508268 - AluSq SINE Alu -5 308 1 1684 272 79 67 chr13 36236751 36237776 -83507122 - L2 LINE L2 -86 3227 2175 194 139 47 0 chr13 36237877 36237920 -83506978 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 271 330 80 0 chr13 36237923 36238011 -83506887 - L2 LINE L2 -5 3267 3173 4161 153 41 21 chr13 36238034 36238676 -83506222 + Tigger1 DNA MER2_type 1 664 -1754 1958 146 10 0 chr13 36238676 36238977 -83505921 - AluJb SINE Alu -8 304 1 4161 153 41 21 chr13 36238977 36239132 -83505766 + Tigger1 DNA MER2_type 664 814 -1604 15988 219 38 17 chr13 36239141 36242544 -83502354 + L1PA15 LINE L1 16 3345 -4258 405 39 0 0 chr13 36242544 36242595 -83502303 + (CA)n Simple_repeat Simple_repeat 2 52 0 15988 219 38 17 chr13 36242595 36246338 -83498560 + L1PA15 LINE L1 3345 7599 -4 8306 134 28 11 chr13 36246350 36247757 -83497141 + Tigger1 DNA MER2_type 802 2231 -187 33 25 0 0 chr13 36247847 36247887 -83497011 + AT_rich Low_complexity Low_complexity 1 40 0 1970 138 47 26 chr13 36247897 36248282 -83496616 - L1MA4 LINE L1 -8 6292 5900 955 151 75 0 chr13 36248284 36248470 -83496428 + Tigger1 DNA MER2_type 2217 2416 -2 21 0 0 0 chr13 36249810 36249831 -83495067 + AT_rich Low_complexity Low_complexity 1 21 0 2015 155 0 3 chr13 36249844 36250141 -83494757 - AluSx SINE Alu -16 296 1 956 189 25 45 chr13 36250875 36251119 -83493779 - MLT1A1 LTR MaLR -126 239 1 2360 98 0 0 chr13 36251738 36252033 -83492865 + AluSg SINE Alu 1 295 -15 2031 67 0 4 chr13 36252773 36253040 -83491858 + L1PA7 LINE L1 5876 6141 -13 709 209 21 38 chr13 36253056 36253295 -83491603 + L1MB8 LINE L1 5927 6161 -17 475 311 66 6 chr13 36254919 36255102 -83489796 + MIR SINE MIR 9 202 -60 911 237 37 12 chr13 36255472 36255927 -83488971 + LTR55 LTR ERV 1 533 -15 1325 175 0 31 chr13 36255937 36256168 -83488730 + L1MA3 LINE L1 6029 6251 -54 2131 123 3 10 chr13 36256168 36256468 -83488430 + AluSx SINE Alu 2 299 -13 1325 175 0 31 chr13 36256468 36256522 -83488376 + L1MA3 LINE L1 6251 6305 0 417 310 222 28 chr13 36256525 36257027 -83487871 - L2 LINE L2 -459 2855 2451 1461 179 68 20 chr13 36257027 36257323 -83487575 + AluJo SINE Alu 1 310 -2 417 310 222 28 chr13 36257323 36257636 -83487262 - L2 LINE L2 -863 2451 1882 261 229 48 24 chr13 36258747 36258830 -83486068 - MIR SINE MIR -66 196 112 933 219 104 1 chr13 36259085 36259443 -83485455 + Charlie4a DNA MER1_type 51 490 -18 2139 93 0 60 chr13 36259448 36259775 -83485123 - AluSq SINE Alu 0 309 1 602 284 91 24 chr13 36259999 36260253 -83484645 + LTR16A LTR ERVL 114 384 -66 661 131 85 26 chr13 36260275 36260428 -83484470 - MER53 DNA DNA -27 162 1 286 169 0 46 chr13 36260428 36260488 -83484410 + LTR16A LTR ERVL 394 450 0 628 217 43 0 chr13 36260943 36261058 -83483840 - FLAM_A SINE Alu -13 120 1 25 31 0 0 chr13 36261801 36261833 -83483065 + AT_rich Low_complexity Low_complexity 1 32 0 267 103 0 0 chr13 36262155 36262194 -83482704 + (TG)n Simple_repeat Simple_repeat 2 40 0 336 176 0 0 chr13 36263267 36263335 -83481563 + CT-rich Low_complexity Low_complexity 5 72 0 262 276 86 112 chr13 36263452 36263684 -83481214 + MIR SINE MIR 10 235 -27 245 264 64 96 chr13 36263839 36263964 -83480934 + MIR SINE MIR 52 172 -90 348 24 0 0 chr13 36264330 36264371 -83480527 + (GA)n Simple_repeat Simple_repeat 2 42 0 546 256 61 17 chr13 36264574 36264754 -83480144 + MIR SINE MIR 1 188 -74 2247 120 73 40 chr13 36264763 36265161 -83479737 + L1MA7 LINE L1 5825 6241 -50 2046 92 28 3 chr13 36265161 36265445 -83479453 + AluSx SINE Alu 1 291 -21 2247 120 73 40 chr13 36265445 36265497 -83479401 + L1MA7 LINE L1 6241 6290 -1 204 217 0 22 chr13 36265516 36265562 -83479336 + MIR SINE MIR 186 230 -32 27 29 0 0 chr13 36265573 36265607 -83479291 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr13 36266450 36266474 -83478424 + AT_rich Low_complexity Low_complexity 1 24 0 1764 196 70 62 chr13 36266638 36267139 -83477759 - MLT1D LTR MaLR 0 505 1 21630 145 19 35 chr13 36267335 36270048 -83474850 + L1M1 LINE L1 22 2776 -4789 561 26 0 26 chr13 36270048 36270126 -83474772 + L1PA4 LINE L1 6080 6155 0 21630 145 19 35 chr13 36270126 36271929 -83472969 + L1M1 LINE L1 2776 4453 -3112 4054 89 16 0 chr13 36271929 36272498 -83472400 + L1PB1 LINE L1 5571 6151 0 21630 145 19 35 chr13 36272498 36272957 -83471941 + L1M1 LINE L1 4453 4918 -2647 1339 284 266 20 chr13 36273713 36274708 -83470190 - L2 LINE L2 -113 3200 1858 2274 144 5 14 chr13 36274708 36275077 -83469821 - MER47A DNA MER2_type 0 366 1 1339 284 266 20 chr13 36275077 36275264 -83469634 - L2 LINE L2 -1455 1858 1718 186 43 0 0 chr13 36276398 36276421 -83468477 + (CAA)n Simple_repeat Simple_repeat 2 24 0 263 365 153 5 chr13 36276476 36276698 -83468200 - MIR SINE MIR -2 260 6 233 293 27 27 chr13 36277110 36277185 -83467713 + MIR SINE MIR 8 82 -180 1485 202 3 16 chr13 36277598 36277905 -83466993 - AluJb SINE Alu -9 303 1 201 158 0 0 chr13 36277948 36277986 -83466912 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 34 55 0 0 chr13 36277993 36278048 -83466850 + AT_rich Low_complexity Low_complexity 1 55 0 246 322 0 8 chr13 36279221 36279339 -83465559 + GA-rich Low_complexity Low_complexity 3 119 0 281 326 81 8 chr13 36279351 36279835 -83465063 + L1M4 LINE L1 2138 2656 -3490 * 369 289 32 16 chr13 36279830 36280020 -83464878 + L1ME4a LINE L1 5759 5951 -219 2387 195 53 29 chr13 36280082 36280666 -83464232 + L1ME1 LINE L1 5549 6146 -20 24 77 0 0 chr13 36280853 36280905 -83463993 + AT_rich Low_complexity Low_complexity 1 52 0 691 245 88 10 chr13 36281790 36281842 -83463056 - MLT2F LTR ERVL -2 661 614 266 87 22 0 chr13 36281842 36281888 -83463010 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 691 245 88 10 chr13 36281888 36282039 -83462859 - MLT2F LTR ERVL -49 614 442 3060 226 57 12 chr13 36282039 36283293 -83461605 + L1MB7 LINE L1 4864 6175 -9 1087 227 74 35 chr13 36283309 36283669 -83461229 - MLT2F LTR ERVL -215 448 4 4571 139 51 93 chr13 36283797 36283946 -83460952 - L1MA9 LINE L1 0 6312 6158 402 138 0 0 chr13 36283946 36284011 -83460887 - AluS SINE Alu -15 294 230 4571 139 51 93 chr13 36284011 36285283 -83459615 - L1MA9 LINE L1 -154 6158 4904 4218 247 154 40 chr13 36285281 36285802 -83459096 - L1MA9 LINE L1 -1457 4689 4229 * 322 118 0 0 chr13 36285802 36285853 -83459045 - Alu SINE Alu 0 300 250 4218 247 154 40 chr13 36285853 36286761 -83458137 - L1MA9 LINE L1 -1917 4229 3015 2135 103 7 7 chr13 36286761 36287053 -83457845 - AluSp SINE Alu -21 292 1 4218 247 154 40 chr13 36287053 36287153 -83457745 - L1MA9 LINE L1 -3131 3015 2928 24 0 0 0 chr13 36287324 36287348 -83457550 + AT_rich Low_complexity Low_complexity 1 24 0 310 210 169 40 chr13 36287369 36287493 -83457405 + L1ME4a LINE L1 5982 6121 0 909 130 0 0 chr13 36288738 36288869 -83456029 - FLAM_C SINE Alu -2 131 1 227 283 0 0 chr13 36289169 36289222 -83455676 + L3 LINE CR1 1524 1576 -1 690 290 108 58 chr13 36289339 36289767 -83455131 - MLT1J LTR MaLR -18 493 45 273 57 0 0 chr13 36289804 36289839 -83455059 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 207 146 0 0 chr13 36289845 36289886 -83455012 + (CA)n Simple_repeat Simple_repeat 2 42 0 337 330 74 11 chr13 36290055 36290231 -83454667 + MIR SINE MIR 62 248 -14 2080 107 3 17 chr13 36290387 36290687 -83454211 + AluSq SINE Alu 1 296 -17 279 265 48 12 chr13 36290698 36290781 -83454117 + MIR SINE MIR 73 158 -104 326 305 144 6 chr13 36290902 36291076 -83453822 - MIR SINE MIR -42 220 23 2614 193 41 7 chr13 36291728 36292268 -83452630 - MER74A LTR ERVL 0 558 1 491 333 56 0 chr13 36292571 36292733 -83452165 + MIR3 SINE MIR 32 202 -6 22 0 0 0 chr13 36293467 36293489 -83451409 + AT_rich Low_complexity Low_complexity 1 22 0 206 254 0 17 chr13 36294281 36294340 -83450558 - MIR3 SINE MIR -48 160 103 282 322 82 67 chr13 36294365 36294756 -83450142 - MLT1K LTR MaLR -190 398 2 336 303 76 8 chr13 36295367 36295486 -83449412 + L2 LINE L2 3186 3312 -1 3264 101 24 0 chr13 36298764 36299229 -83445669 - L1PA13 LINE L1 -6 6157 5682 273 293 39 72 chr13 36299547 36299728 -83445170 - LTR33 LTR ERVL -24 497 323 1955 124 0 0 chr13 36300132 36300405 -83444493 + AluSc SINE Alu 1 273 -36 2057 164 91 30 chr13 36300909 36301347 -83443551 + MLT1C LTR MaLR 3 467 0 2252 62 51 20 chr13 36302808 36303100 -83441798 - AluSp SINE Alu -11 302 2 1874 170 13 0 chr13 36303742 36304048 -83440850 - AluJb SINE Alu 0 312 3 207 0 0 0 chr13 36304549 36304572 -83440326 + (CA)n Simple_repeat Simple_repeat 2 24 0 1540 269 150 19 chr13 36304808 36305728 -83439170 - L1MC4 LINE L1 -51 7991 6951 8275 209 30 18 chr13 36305740 36306597 -83438301 - L1MB2 LINE L1 -8 6163 5318 189 0 0 0 chr13 36306597 36306618 -83438280 + (TTG)n Simple_repeat Simple_repeat 1 21 0 8275 209 30 18 chr13 36306618 36306639 -83438259 - L1MB2 LINE L1 -853 5318 5299 7116 37 0 0 chr13 36306639 36307759 -83437139 - L1PA3 LINE L1 0 6155 5017 8275 209 30 18 chr13 36307759 36308506 -83436392 - L1MB2 LINE L1 -872 5299 4563 2089 186 56 0 chr13 36308506 36308915 -83435983 - MSTB1 LTR MaLR 0 432 1 8275 209 30 18 chr13 36308915 36310215 -83434683 - L1MB2 LINE L1 -1608 4563 3198 230 286 0 0 chr13 36310961 36311017 -83433881 - L2 LINE L2 -493 2821 2766 31 68 0 0 chr13 36311520 36311579 -83433319 + AT_rich Low_complexity Low_complexity 1 59 0 29 47 0 0 chr13 36311809 36311852 -83433046 + AT_rich Low_complexity Low_complexity 1 43 0 992 240 123 10 chr13 36312023 36312331 -83432567 + LTR16B LTR ERVL 116 458 -6 321 270 110 67 chr13 36312690 36313046 -83431852 + L1ME LINE L1 604 974 -5096 22 56 0 0 chr13 36313423 36313459 -83431439 + AT_rich Low_complexity Low_complexity 1 36 0 1174 249 186 40 chr13 36314081 36314635 -83430263 + MLT1E1 LTR MaLR 1 635 -19 1195 213 26 96 chr13 36314636 36315115 -83429783 + MLT2B3 LTR ERVL 1 451 -2 445 290 62 31 chr13 36315121 36315345 -83429553 + L1ME LINE L1 2355 2585 -3495 523 271 103 58 chr13 36315348 36315658 -83429240 - MER46C DNA MER2_type -6 332 9 236 219 0 27 chr13 36315745 36315818 -83429080 + L1ME LINE L1 2719 2789 -3291 297 0 0 0 chr13 36315977 36316010 -83428888 + (CA)n Simple_repeat Simple_repeat 2 34 0 458 283 117 60 chr13 36316067 36316621 -83428277 - L1MDa LINE L1 -5800 740 155 1902 68 0 0 chr13 36316621 36316857 -83428041 - LTR12 LTR ERV1 0 714 479 5496 93 54 4 chr13 36316858 36317641 -83427257 - LTR12 LTR ERV1 -4 822 1 290 309 59 0 chr13 36317641 36317777 -83427121 - L1MDa LINE L1 -6382 158 15 706 145 60 177 chr13 36318100 36318348 -83426550 - MER20 DNA MER1_type 0 219 1 2040 178 71 57 chr13 36319780 36319879 -83425019 - MER67D LTR ERV1 0 514 418 1653 161 0 0 chr13 36319879 36320153 -83424745 + L1PA13 LINE L1 5878 6151 -12 2040 178 71 57 chr13 36320153 36320560 -83424338 - MER67D LTR ERV1 -96 418 1 327 344 78 0 chr13 36320605 36320733 -83424165 - MIR SINE MIR -84 178 41 341 140 0 0 chr13 36322895 36322945 -83421953 - AluS SINE Alu -228 74 25 1787 100 0 0 chr13 36322945 36323176 -83421722 + AluSg/x SINE Alu 80 310 0 24 53 0 0 chr13 36323207 36323245 -83421653 + AT_rich Low_complexity Low_complexity 1 38 0 2045 150 144 0 chr13 36323390 36323764 -83421134 + MSTC LTR MaLR 1 428 0 1644 116 0 0 chr13 36325617 36325842 -83419056 - AluSg/x SINE Alu 0 312 88 622 223 173 21 chr13 36326428 36326804 -83418094 - MLT1J LTR MaLR -40 471 24 2101 112 11 0 chr13 36328654 36328940 -83415958 + AluSg SINE Alu 9 297 -13 2222 107 72 20 chr13 36329601 36329947 -83414951 - THE1B LTR MaLR 0 364 1 216 184 0 0 chr13 36330704 36330742 -83414156 + (CA)n Simple_repeat Simple_repeat 1 38 0 186 316 31 92 chr13 36331978 36332076 -83412822 - MIR SINE MIR -64 144 53 308 348 0 0 chr13 36332378 36332447 -83412451 - L3 LINE CR1 -95 1482 1414 210 37 0 0 chr13 36332464 36332491 -83412407 + (TTTAG)n Simple_repeat Simple_repeat 3 29 0 423 323 79 37 chr13 36332575 36332953 -83411945 + MLT1K LTR MaLR 137 530 -58 362 372 105 34 chr13 36333045 36333633 -83411265 - L3 LINE CR1 -249 1328 699 27 0 0 0 chr13 36333657 36333684 -83411214 + AT_rich Low_complexity Low_complexity 1 27 0 204 67 0 0 chr13 36335546 36335576 -83409322 + (T)n Simple_repeat Simple_repeat 1 30 0 253 180 45 11 chr13 36335831 36335920 -83408978 + (TA)n Simple_repeat Simple_repeat 1 92 0 180 0 0 0 chr13 36337120 36337140 -83407758 + (TG)n Simple_repeat Simple_repeat 2 21 0 314 231 44 44 chr13 36337432 36337523 -83407375 - L2 LINE L2 -1 3312 3222 24 53 0 0 chr13 36337540 36337578 -83407320 + AT_rich Low_complexity Low_complexity 1 38 0 570 274 222 0 chr13 36338310 36338522 -83406376 + MIR SINE MIR 2 260 -2 438 254 25 8 chr13 36339239 36339361 -83405537 - LTR33 LTR ERVL -5 516 393 256 373 25 21 chr13 36339623 36339859 -83405039 - ERVL LTR ERVL -437 5327 5091 1148 286 63 34 chr13 36339915 36340359 -83404539 - ERVL LTR ERVL -1164 4600 4144 848 351 37 11 chr13 36340610 36340884 -83404014 - ERVL LTR ERVL -1975 3789 3501 1967 160 0 0 chr13 36340884 36341196 -83403702 - AluSx SINE Alu 0 312 1 848 351 37 11 chr13 36341196 36341297 -83403601 - ERVL LTR ERVL -2263 3501 3404 925 329 56 32 chr13 36341339 36342001 -83402897 - ERVL LTR ERVL -2382 3272 2595 26 30 0 0 chr13 36342523 36342556 -83402342 + AT_rich Low_complexity Low_complexity 1 33 0 1381 130 4 59 chr13 36342615 36342853 -83402045 + AluSg/x SINE Alu 74 298 -14 1402 155 19 0 chr13 36342916 36343174 -83401724 - L1MA9 LINE L1 0 6312 6050 378 254 11 39 chr13 36343180 36343253 -83401645 - L1M4 LINE L1 -3123 3023 2950 2342 50 7 23 chr13 36343253 36343554 -83401344 - AluY SINE Alu -15 296 1 378 254 11 39 chr13 36343554 36343661 -83401237 - L1M4 LINE L1 -3196 2950 2848 3894 195 35 60 chr13 36343704 36344553 -83400345 - L1MD1 LINE L1 -8 6234 5365 1609 146 27 42 chr13 36344553 36344889 -83400009 - L1MA8 LINE L1 -3 6288 5958 3894 195 35 60 chr13 36344889 36345921 -83398977 - L1MD1 LINE L1 -877 5365 4405 27 0 0 0 chr13 36346802 36346829 -83398069 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr13 36347053 36347083 -83397815 + AT_rich Low_complexity Low_complexity 1 30 0 6556 69 21 2 chr13 36347151 36348194 -83396704 + L1PA8 LINE L1 5105 6164 -8 290 317 201 0 chr13 36348362 36348526 -83396372 + MIR SINE MIR 8 204 -58 2482 74 0 0 chr13 36349649 36349959 -83394939 + AluY SINE Alu 2 311 0 11209 161 135 16 chr13 36350067 36352619 -83392279 + L1PBa LINE L1 115 2971 -3892 251 174 14 14 chr13 36352619 36352688 -83392210 + (TA)n Simple_repeat Simple_repeat 2 70 0 5954 99 18 9 chr13 36352699 36353810 -83391088 + L1PB1 LINE L1 5022 6150 -1 1339 216 14 0 chr13 36355328 36355611 -83389287 + MER63 DNA MER1_type 776 1062 0 200 322 85 0 chr13 36355986 36356045 -83388853 - L2 LINE L2 -1 3271 3208 354 299 81 88 chr13 36356543 36356988 -83387910 - HAL1b LINE L1 -699 649 208 21 82 0 0 chr13 36357305 36357354 -83387544 + AT_rich Low_complexity Low_complexity 1 49 0 403 313 16 16 chr13 36357963 36358091 -83386807 + MIR SINE MIR 16 143 -119 290 191 34 56 chr13 36359079 36359168 -83385730 - HAL1 LINE L1 -8 2499 2413 880 260 63 29 chr13 36359170 36359485 -83385413 - HAL1 LINE L1 -683 1824 1499 360 373 62 0 chr13 36359489 36359666 -83385232 - HAL1 LINE L1 -2213 294 107 197 264 42 42 chr13 36360022 36360094 -83384804 + L3 LINE CR1 996 1067 -510 27 62 0 0 chr13 36361481 36361529 -83383369 + AT_rich Low_complexity Low_complexity 1 48 0 1800 225 85 140 chr13 36362148 36362330 -83382568 - HsTC2 DNA Tc2 -744 1154 964 2066 125 41 0 chr13 36362330 36362625 -83382273 - AluSg SINE Alu -3 307 1 1800 225 85 140 chr13 36362625 36362886 -83382012 - HsTC2 DNA Tc2 -934 964 690 2181 110 0 0 chr13 36362886 36363176 -83381722 + AluSq SINE Alu 7 296 -17 1800 225 85 140 chr13 36363176 36363951 -83380947 - HsTC2 DNA Tc2 -1208 690 2 699 244 24 21 chr13 36364013 36364226 -83380672 - L1MB8 LINE L1 0 6178 5961 371 183 73 0 chr13 36366483 36366565 -83378333 - L1M4 LINE L1 -1223 4923 4836 340 254 23 39 chr13 36366562 36366692 -83378206 - L1MEc LINE L1 -3679 2536 2409 * 263 222 0 0 chr13 36366727 36366781 -83378117 - L1MEc LINE L1 -3794 2421 2368 1558 304 68 32 chr13 36366887 36367439 -83377459 - L1MEc LINE L1 -4307 2089 1483 2633 98 35 0 chr13 36367439 36367816 -83377082 - L1PA11 LINE L1 -10 6164 5775 1558 304 68 32 chr13 36367816 36368268 -83376630 - L1MEc LINE L1 -4913 1483 1049 503 375 13 15 chr13 36368363 36368758 -83376140 - L1MEc LINE L1 -5501 895 502 1805 159 10 10 chr13 36369072 36369374 -83375524 - AluSx SINE Alu -10 302 1 291 189 41 41 chr13 36370107 36370229 -83374669 + (TTATA)n Simple_repeat Simple_repeat 4 125 0 500 264 61 6 chr13 36371342 36371505 -83373393 - L1ME3A LINE L1 -8 6162 5991 630 207 17 6 chr13 36371807 36371981 -83372917 + CT-rich Low_complexity Low_complexity 2 177 0 309 261 45 9 chr13 36372676 36372787 -83372111 + L1MC4a LINE L1 5811 5925 -1883 896 209 23 6 chr13 36373044 36373216 -83371682 - MER41D LTR ERV1 -1 556 382 21 36 0 0 chr13 36374103 36374131 -83370767 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 36375590 36375619 -83369279 + AT_rich Low_complexity Low_complexity 1 29 0 654 310 57 36 chr13 36375840 36375863 -83369035 + L1MEc LINE L1 1072 1093 -5122 3254 178 25 2 chr13 36375863 36376452 -83368446 + LTR26 LTR ERV1 1 603 0 654 310 57 36 chr13 36376452 36377120 -83367778 + L1MEc LINE L1 1093 1742 -4473 2099 109 0 0 chr13 36377136 36377412 -83367486 + AluSx SINE Alu 22 297 -15 1529 202 108 19 chr13 36377764 36378125 -83366773 + MSTD LTR MaLR 4 396 0 26 30 0 0 chr13 36379104 36379137 -83365761 + AT_rich Low_complexity Low_complexity 1 33 0 2419 62 3 3 chr13 36380093 36380399 -83364499 - AluY SINE Alu -5 306 1 188 61 61 0 chr13 36380493 36380526 -83364372 + T-rich Low_complexity Low_complexity 2 36 0 194 210 0 113 chr13 36380801 36380863 -83364035 + MER5B DNA MER1_type 1 55 -123 186 427 10 0 chr13 36381091 36381187 -83363711 - L2 LINE L2 -190 3082 2986 1044 234 56 59 chr13 36381556 36381894 -83363004 - MLT1A1 LTR MaLR -28 337 1 195 107 0 0 chr13 36381894 36381922 -83362976 - L2 LINE L2 -695 2619 2592 534 341 166 26 chr13 36382119 36382571 -83362327 + L2 LINE L2 1644 2204 -1110 2101 93 0 36 chr13 36382571 36382873 -83362025 - AluY SINE Alu -20 291 1 534 341 166 26 chr13 36382873 36383027 -83361871 + L2 LINE L2 2204 2335 -979 654 222 0 0 chr13 36383030 36383147 -83361751 - MLT1A1 LTR MaLR -219 146 30 1571 177 64 3 chr13 36383461 36383744 -83361154 + AluJb SINE Alu 3 302 -10 185 35 69 0 chr13 36384378 36384407 -83360491 + A-rich Low_complexity Low_complexity 5 35 0 25 0 0 0 chr13 36385476 36385501 -83359397 + AT_rich Low_complexity Low_complexity 1 25 0 181 175 0 53 chr13 36387775 36387832 -83357066 + CT-rich Low_complexity Low_complexity 2 55 0 253 331 73 29 chr13 36388340 36388476 -83356422 + L2 LINE L2 3172 3313 0 467 67 45 22 chr13 36388592 36388681 -83356217 + GA-rich Low_complexity Low_complexity 2 92 0 472 258 16 39 chr13 36389590 36389718 -83355180 + L2 LINE L2 3189 3313 0 180 0 0 0 chr13 36390562 36390582 -83354316 + (TA)n Simple_repeat Simple_repeat 1 20 0 1366 210 19 0 chr13 36390770 36391041 -83353857 + MER58B DNA MER1_type 66 341 0 1506 201 3 23 chr13 36394762 36395061 -83349837 + AluJo SINE Alu 1 293 -19 1986 104 61 14 chr13 36396752 36397049 -83347849 - AluSx SINE Alu -1 311 1 207 0 0 0 chr13 36398003 36398026 -83346872 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 633 209 8 0 chr13 36398586 36398715 -83346183 + FLAM_C SINE Alu 6 135 -8 214 332 68 68 chr13 36402093 36402313 -83342585 - L2 LINE L2 -835 2479 2260 1748 48 0 9 chr13 36402448 36402675 -83342223 - L1PA4 LINE L1 0 6155 5931 21 36 0 0 chr13 36403439 36403467 -83341431 + AT_rich Low_complexity Low_complexity 1 28 0 721 360 76 11 chr13 36404086 36404466 -83340432 + L3 LINE CR1 563 967 -610 253 250 135 0 chr13 36405923 36406019 -83338879 - MIR SINE MIR -56 206 98 1884 110 45 17 chr13 36406033 36406324 -83338574 - AluSx SINE Alu -13 299 1 291 275 119 9 chr13 36407024 36407133 -83337765 - MIR3 SINE MIR -54 154 34 22 0 0 0 chr13 36409194 36409216 -83335682 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 36410695 36410719 -83334179 + AT_rich Low_complexity Low_complexity 1 24 0 1169 239 99 95 chr13 36415218 36415786 -83329112 - MLT1G LTR MaLR 0 590 21 13846 93 1 0 chr13 36415786 36418522 -83326376 + L1PA7 LINE L1 3413 6154 0 397 296 110 25 chr13 36419025 36419489 -83325409 - L1MEc LINE L1 -4460 1965 1368 216 308 26 51 chr13 36419560 36419638 -83325260 - L3 LINE CR1 -1441 136 61 2163 110 0 7 chr13 36420372 36420682 -83324216 - AluSc SINE Alu -1 308 1 225 339 9 18 chr13 36420816 36420925 -83323973 + L2 LINE L2 352 459 -2855 287 117 0 0 chr13 36420962 36421009 -83323889 - Alu SINE Alu -258 44 5 269 271 0 14 chr13 36421271 36421341 -83323557 + MER5B DNA MER1_type 1 69 -109 366 290 24 16 chr13 36422296 36422420 -83322478 + MIR SINE MIR 30 154 -108 490 207 0 0 chr13 36422952 36423034 -83321864 - AluS SINE Alu -230 82 1 1134 279 23 25 chr13 36423746 36424140 -83320758 - LTR52 LTR ERVL -5 416 24 207 0 0 0 chr13 36424950 36424973 -83319925 + (TG)n Simple_repeat Simple_repeat 1 23 0 311 391 75 0 chr13 36425651 36425812 -83319086 + MIR3 SINE MIR 30 202 -6 295 246 177 15 chr13 36426536 36426666 -83318232 + MIR SINE MIR 75 225 -37 2043 144 8 41 chr13 36426790 36427178 -83317720 + THE1C LTR MaLR 1 375 0 318 377 27 7 chr13 36429048 36429194 -83315704 - L2 LINE L2 -5 3308 3160 2838 13 0 0 chr13 36429293 36429604 -83315294 + AluYa5 SINE Alu 1 311 0 2030 140 10 3 chr13 36430064 36430371 -83314527 - AluSg SINE Alu -1 309 1 287 326 20 34 chr13 36430467 36430614 -83314284 + L2 LINE L2 313 457 -2857 2350 170 50 5 chr13 36431100 36431501 -83313397 + MSTC LTR MaLR 10 428 0 2212 118 0 0 chr13 36432711 36433008 -83311890 + AluSc SINE Alu 1 297 -12 1731 108 4 12 chr13 36433575 36433824 -83311074 + AluSx SINE Alu 61 307 -5 1685 160 41 28 chr13 36433873 36434261 -83310637 + L1MB8 LINE L1 5785 6177 -1 184 357 0 14 chr13 36434792 36434862 -83310036 + L2 LINE L2 3188 3256 -16 1866 175 112 5 chr13 36436185 36436568 -83308330 + MSTB LTR MaLR 1 424 -2 4135 214 46 33 chr13 36436618 36437619 -83307279 + L1MD2 LINE L1 5012 5999 -360 12545 159 47 17 chr13 36437619 36439965 -83304933 + Tigger1 DNA MER2_type 1 2418 0 4135 214 46 33 chr13 36439965 36440070 -83304828 + L1MD2 LINE L1 5999 6101 -258 222 91 0 0 chr13 36440070 36440103 -83304795 + (CA)n Simple_repeat Simple_repeat 2 34 0 4135 214 46 33 chr13 36440103 36440290 -83304608 + L1MD2 LINE L1 6101 6337 -22 190 159 87 101 chr13 36440389 36440458 -83304440 - MIR SINE MIR -66 142 75 267 31 0 0 chr13 36440666 36440698 -83304200 + (A)n Simple_repeat Simple_repeat 1 32 0 26 64 0 0 chr13 36440752 36440799 -83304099 + AT_rich Low_complexity Low_complexity 1 47 0 438 259 144 15 chr13 36442580 36442781 -83302117 + MIR SINE MIR 2 228 -34 24 0 0 0 chr13 36446536 36446560 -83298338 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 36446930 36446951 -83297947 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr13 36447347 36447393 -83297505 + AT_rich Low_complexity Low_complexity 1 46 0 214 356 167 6 chr13 36448864 36449038 -83295860 + MIR SINE MIR 3 204 -58 2855 184 17 31 chr13 36449527 36449912 -83294986 - L1M3f LINE L1 -4756 572 196 1917 138 27 3 chr13 36449912 36450210 -83294688 - AluSg SINE Alu -2 308 4 2855 184 17 31 chr13 36450210 36450404 -83294494 - L1M3f LINE L1 -5132 196 1 239 227 30 0 chr13 36451019 36451085 -83293813 - MLT1C LTR MaLR -167 300 233 737 174 7 14 chr13 36451137 36451275 -83293623 - MLT1C LTR MaLR -330 137 1 2339 93 0 10 chr13 36451771 36452083 -83292815 + AluY SINE Alu 1 309 -2 213 290 155 45 chr13 36454894 36455049 -83289849 + MIR3 SINE MIR 6 177 -31 2255 83 0 0 chr13 36455291 36455605 -83289293 - AluSc SINE Alu 0 315 2 2546 58 7 0 chr13 36456818 36457126 -83287772 + AluY SINE Alu 1 310 -1 33 43 0 0 chr13 36457559 36457606 -83287292 + AT_rich Low_complexity Low_complexity 1 47 0 314 61 20 0 chr13 36457927 36457976 -83286922 + (TC)n Simple_repeat Simple_repeat 2 51 0 207 0 0 0 chr13 36457978 36458001 -83286897 + (CA)n Simple_repeat Simple_repeat 2 24 0 289 276 61 0 chr13 36458171 36458269 -83286629 - L2 LINE L2 -33 3239 3136 197 359 60 26 chr13 36458799 36458916 -83285982 - L2 LINE L2 -204 3068 2948 2091 187 44 19 chr13 36459024 36459435 -83285463 + MSTB1 LTR MaLR 12 432 0 679 353 56 49 chr13 36459685 36460519 -83284379 - L2 LINE L2 -797 2517 1678 194 314 35 23 chr13 36460583 36460669 -83284229 - MIR SINE MIR 0 262 176 2130 116 3 3 chr13 36461951 36462245 -83282653 + AluSx SINE Alu 1 294 -18 198 313 0 0 chr13 36464854 36464902 -83279996 + L2 LINE L2 3251 3298 -15 207 0 0 0 chr13 36465233 36465256 -83279642 + (A)n Simple_repeat Simple_repeat 1 23 0 305 216 159 13 chr13 36465657 36465824 -83279074 + LTR40c LTR ERVL 198 384 -78 26 30 0 0 chr13 36466051 36466084 -83278814 + AT_rich Low_complexity Low_complexity 1 33 0 617 279 161 50 chr13 36466159 36466711 -83278187 + L2 LINE L2 2065 2689 -625 2082 118 0 3 chr13 36466711 36467000 -83277898 - AluSx SINE Alu -24 288 1 617 279 161 50 chr13 36467000 36467042 -83277856 + L2 LINE L2 2689 2725 -589 243 267 70 23 chr13 36467298 36467384 -83277514 - L2 LINE L2 -2 3270 3181 25 31 0 0 chr13 36468125 36468157 -83276741 + AT_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chr13 36468552 36468595 -83276303 + AT_rich Low_complexity Low_complexity 1 43 0 1254 211 77 52 chr13 36469026 36469391 -83275507 + MLT1A2 LTR MaLR 1 374 0 201 378 109 29 chr13 36469974 36470286 -83274612 + L2 LINE L2 2926 3262 -10 259 343 38 59 chr13 36470503 36470621 -83274277 - MIR SINE MIR -64 144 40 203 171 0 24 chr13 36470695 36470736 -83274162 + GA-rich Low_complexity Low_complexity 4 43 0 561 252 77 13 chr13 36470755 36470910 -83273988 - MIR SINE MIR -43 219 55 448 315 33 5 chr13 36471551 36471735 -83273163 + MER5A DNA MER1_type 1 189 0 2811 52 0 0 chr13 36472120 36472469 -83272429 - L1PA5 LINE L1 -2 6152 5804 196 337 12 12 chr13 36473612 36473698 -83271200 - MIR3 SINE MIR -9 199 114 21 71 0 0 chr13 36474158 36474200 -83270698 + AT_rich Low_complexity Low_complexity 1 42 0 310 292 91 32 chr13 36474354 36474573 -83270325 + L1MCc LINE L1 24 255 -6168 361 295 36 30 chr13 36474584 36474750 -83270148 + L1MCc LINE L1 303 469 -5954 2136 114 0 0 chr13 36475520 36475824 -83269074 - AluSg SINE Alu 0 304 1 26 0 0 0 chr13 36476176 36476202 -83268696 + AT_rich Low_complexity Low_complexity 1 26 0 324 367 23 8 chr13 36477732 36477860 -83267038 - MIR3 SINE MIR -33 175 46 229 376 39 11 chr13 36478348 36478529 -83266369 + L2 LINE L2 3118 3303 -10 1671 157 77 7 chr13 36478868 36479155 -83265743 - AluSx SINE Alu -5 307 1 206 400 33 0 chr13 36479157 36479247 -83265651 - L3b LINE CR1 -49 1534 1442 2412 62 0 10 chr13 36479659 36479964 -83264934 - AluY SINE Alu -8 303 2 257 243 90 18 chr13 36481277 36481388 -83263510 + L1ME4a LINE L1 6000 6118 -3 23 0 0 0 chr13 36483615 36483638 -83261260 + AT_rich Low_complexity Low_complexity 1 23 0 312 218 0 0 chr13 36483697 36483784 -83261114 + CT-rich Low_complexity Low_complexity 3 89 0 203 398 21 0 chr13 36484305 36484398 -83260500 - MIR3 SINE MIR 0 208 114 2342 118 39 14 chr13 36484542 36484897 -83260001 - THE1B LTR MaLR 0 364 1 27 49 0 0 chr13 36484950 36484991 -83259907 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr13 36485478 36485508 -83259390 + AT_rich Low_complexity Low_complexity 1 30 0 352 297 30 0 chr13 36486219 36486320 -83258578 + MER5A DNA MER1_type 9 112 -77 645 225 87 6 chr13 36486580 36486729 -83258169 - MER5A DNA MER1_type -2 187 21 1998 94 0 4 chr13 36486729 36486994 -83257904 - AluY SINE Alu -19 292 29 645 225 87 6 chr13 36486994 36487017 -83257881 - MER5A DNA MER1_type -168 21 1 763 309 40 16 chr13 36487570 36487819 -83257079 + MIR SINE MIR 6 260 -2 277 310 20 0 chr13 36487826 36487926 -83256972 + (CATATA)n Simple_repeat Simple_repeat 5 106 0 365 249 116 26 chr13 36487960 36488149 -83256749 + Charlie7 DNA MER1_type 400 605 -2007 1404 244 30 30 chr13 36490451 36490918 -83253980 - MLT1C LTR MaLR 0 467 1 2518 226 33 68 chr13 36492028 36492947 -83251951 + L1ME1 LINE L1 5279 6161 -5 1384 117 216 9 chr13 36492966 36493197 -83251701 + AluSg1 SINE Alu 1 279 -30 243 0 0 0 chr13 36493204 36493231 -83251667 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3916 158 22 7 chr13 36493408 36494147 -83250751 + L1MA8 LINE L1 5542 6291 0 2316 35 0 7 chr13 36495039 36495325 -83249573 - L1PA4 LINE L1 -1 6154 5871 315 244 9 61 chr13 36497190 36497305 -83247593 - L1MC4 LINE L1 -1320 6722 6614 1174 208 6 45 chr13 36500323 36500660 -83244238 - MER33 DNA MER1_type 0 324 1 297 294 14 82 chr13 36501573 36501719 -83243179 - MIR3 SINE MIR -11 197 62 332 117 0 17 chr13 36502593 36502653 -83242245 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 182 37 37 0 chr13 36502647 36502674 -83242224 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 * 2006 136 26 0 chr13 36502686 36502988 -83241910 - AluSx SINE Alu -2 310 1 473 329 80 13 chr13 36503015 36503240 -83241658 + L2 LINE L2 2652 2891 -423 434 285 75 25 chr13 36503361 36503561 -83241337 + L2 LINE L2 3104 3313 0 259 294 76 0 chr13 36504000 36504092 -83240806 + MIR SINE MIR 132 230 -32 1051 196 14 10 chr13 36506055 36506377 -83238521 + MLT1B LTR MaLR 1 390 0 2174 250 82 44 chr13 36506379 36507769 -83237129 + L1ME LINE L1 177 1595 -4620 957 172 0 0 chr13 36507773 36507924 -83236974 + AluJb SINE Alu 147 297 -15 506 280 50 15 chr13 36507924 36508124 -83236774 + L1ME LINE L1 1632 1838 -4558 610 307 70 20 chr13 36508290 36508635 -83236263 + L1ME LINE L1 1683 2044 -4352 340 136 168 101 chr13 36508637 36508755 -83236143 + MLT1E2 LTR MaLR 1 197 -457 822 242 44 16 chr13 36508813 36509152 -83235746 + MLT1D LTR MaLR 125 502 -3 33 0 0 0 chr13 36510147 36510180 -83234718 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr13 36510574 36510600 -83234298 + AT_rich Low_complexity Low_complexity 1 26 0 708 178 0 39 chr13 36510678 36510807 -83234091 - FLAM_C SINE Alu -16 127 4 366 331 50 7 chr13 36510966 36511105 -83233793 - MIR SINE MIR -115 147 3 387 277 72 63 chr13 36512300 36512426 -83232472 + L1MC4a LINE L1 5432 5555 -566 1700 166 20 20 chr13 36512426 36512728 -83232170 - AluJo SINE Alu -10 302 1 387 277 72 63 chr13 36512728 36513053 -83231845 + L1MC4a LINE L1 5555 5790 -331 5993 199 94 35 chr13 36513786 36514799 -83230099 + L1MB3 LINE L1 862 1814 -4568 2028 105 0 18 chr13 36514799 36515084 -83229814 + AluSg SINE Alu 11 290 -20 5993 199 94 35 chr13 36515084 36516715 -83228183 + L1MB3 LINE L1 1814 3667 -2715 3752 214 32 15 chr13 36516715 36518882 -83226016 + L1MB3 LINE L1 4024 6418 -1 186 43 0 0 chr13 36519457 36519480 -83225418 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 68 0 0 chr13 36519916 36519960 -83224938 + AT_rich Low_complexity Low_complexity 1 44 0 397 311 49 37 chr13 36520921 36521085 -83223813 - L2 LINE L2 -3 3269 3104 2547 202 55 10 chr13 36521244 36521840 -83223058 + L1 LINE L1 4043 4669 -1477 216 0 0 0 chr13 36521840 36521864 -83223034 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2547 202 55 10 chr13 36521864 36521885 -83223013 + L1 LINE L1 4669 4688 -1458 1452 211 0 0 chr13 36521885 36522150 -83222748 + AluJo SINE Alu 22 286 -26 349 236 21 14 chr13 36522157 36522258 -83222640 - MLT1H1 LTR MaLR -424 131 45 282 311 121 15 chr13 36522292 36522424 -83222474 - L2 LINE L2 -823 2491 2346 573 306 83 32 chr13 36522599 36522877 -83222021 - L2 LINE L2 -19 3294 3003 251 428 59 11 chr13 36522956 36523143 -83221755 + L2 LINE L2 2895 3090 -182 745 99 0 0 chr13 36523437 36523548 -83221350 + L1MA5A LINE L1 6179 6289 -8 29 0 0 0 chr13 36524687 36524716 -83220182 + AT_rich Low_complexity Low_complexity 1 29 0 1866 160 0 13 chr13 36525602 36525902 -83218996 - AluJb SINE Alu -16 296 1 284 68 0 23 chr13 36526091 36526135 -83218763 + (TAA)n Simple_repeat Simple_repeat 2 44 0 223 238 0 32 chr13 36526158 36526221 -83218677 - MIR SINE MIR -31 231 171 212 171 12 61 chr13 36526321 36526362 -83218536 + (TTTA)n Simple_repeat Simple_repeat 2 39 -40 1477 193 0 7 chr13 36526362 36526636 -83218262 - AluJb SINE Alu -32 280 9 212 171 12 61 chr13 36526636 36526676 -83218222 + (TTTA)n Simple_repeat Simple_repeat 39 79 0 497 255 33 71 chr13 36527345 36527529 -83217369 - MER5B DNA MER1_type -1 177 1 254 224 17 0 chr13 36527774 36527832 -83217066 + MER81 DNA DNA 24 82 -32 2184 117 0 0 chr13 36528374 36528673 -83216225 - AluSg SINE Alu -11 299 1 271 343 61 33 chr13 36530680 36530893 -83214005 + MIR SINE MIR 2 220 -42 199 326 153 68 chr13 36531264 36531558 -83213340 - L2 LINE L2 -5 3267 2949 526 111 0 0 chr13 36531996 36532068 -83212830 + FLAM SINE Alu 54 125 -18 287 259 155 17 chr13 36532414 36532530 -83212368 + L2 LINE L2 3173 3304 -9 21 0 0 0 chr13 36532582 36532603 -83212295 + AT_rich Low_complexity Low_complexity 1 21 0 779 250 0 27 chr13 36534063 36534247 -83210651 + MER8 DNA MER2_type 1 179 -60 387 194 0 0 chr13 36534223 36534285 -83210613 + MER2 DNA MER2_type 283 344 -1 * 234 91 0 0 chr13 36534288 36534321 -83210577 + (TA)n Simple_repeat Simple_repeat 2 34 0 264 278 0 0 chr13 36534321 36534411 -83210487 - L1MC4 LINE L1 -1339 6703 6614 263 333 76 56 chr13 36534432 36534576 -83210322 - MIR SINE MIR -111 151 5 1565 242 12 6 chr13 36536743 36537082 -83207816 - Tigger7 DNA MER2_type -2146 341 1 25 31 0 0 chr13 36537291 36537323 -83207575 + AT_rich Low_complexity Low_complexity 1 32 0 259 130 0 43 chr13 36537502 36537548 -83207350 + THE1B LTR MaLR 1 44 -320 21 0 0 0 chr13 36537592 36537613 -83207285 + AT_rich Low_complexity Low_complexity 1 21 0 1596 163 62 43 chr13 36537801 36538169 -83206729 + THE1C LTR MaLR 1 375 0 26 50 0 0 chr13 36538170 36538210 -83206688 + AT_rich Low_complexity Low_complexity 1 40 0 382 265 73 25 chr13 36538502 36538706 -83206192 - L1MC4 LINE L1 -836 7206 6993 * 983 285 71 16 chr13 36538697 36539150 -83205748 - L1ME3A LINE L1 -1 6169 5692 590 308 37 7 chr13 36539324 36539523 -83205375 - L1ME3A LINE L1 -2194 3952 3729 1868 44 0 0 chr13 36539523 36539750 -83205148 - L1PA7 LINE L1 -8 6146 5920 590 308 37 7 chr13 36539750 36539875 -83205023 - L1ME3A LINE L1 -2417 3729 3609 228 67 0 0 chr13 36540262 36540292 -83204606 + (GA)n Simple_repeat Simple_repeat 1 30 0 267 308 93 19 chr13 36540552 36540659 -83204239 - L2 LINE L2 -4 3268 3154 189 0 0 0 chr13 36540942 36540963 -83203935 + (TA)n Simple_repeat Simple_repeat 2 22 0 258 267 0 0 chr13 36541727 36541787 -83203111 - L2 LINE L2 -1 3271 3212 285 29 0 0 chr13 36541843 36541877 -83203021 + (CA)n Simple_repeat Simple_repeat 1 34 0 549 88 0 0 chr13 36542409 36542489 -83202409 + (GA)n Simple_repeat Simple_repeat 1 80 0 416 102 0 0 chr13 36543835 36543894 -83201004 - MADE1 DNA Mariner 0 80 22 596 227 64 7 chr13 36544149 36544290 -83200608 - AluJb SINE Alu -30 282 134 1306 146 150 33 chr13 36544290 36544564 -83200334 - AluJo SINE Alu -2 310 5 30 45 0 0 chr13 36544937 36544981 -83199917 + AT_rich Low_complexity Low_complexity 1 44 0 259 313 0 12 chr13 36545008 36545088 -83199810 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 222 118 0 0 chr13 36545122 36545156 -83199742 + (TGGA)n Simple_repeat Simple_repeat 4 37 0 2153 123 0 7 chr13 36545391 36545701 -83199197 - AluSx SINE Alu -4 308 1 1061 232 108 30 chr13 36545812 36546282 -83198616 - Charlie4a DNA MER1_type 0 508 2 26 30 0 0 chr13 36546413 36546446 -83198452 + AT_rich Low_complexity Low_complexity 1 33 0 331 330 111 5 chr13 36547269 36547497 -83197401 + L1M4 LINE L1 3985 4236 -1910 286 332 112 6 chr13 36547852 36548068 -83196830 + L1MC/D LINE L1 4015 4252 -1894 340 312 172 41 chr13 36548961 36549403 -83195495 + L1MC/D LINE L1 5305 5804 -2004 1272 119 73 36 chr13 36550022 36550241 -83194657 - MER30 DNA MER1_type 0 230 4 564 283 130 26 chr13 36550586 36550816 -83194082 - MIR SINE MIR -3 259 6 915 19 0 0 chr13 36551594 36551700 -83193198 - L1PA3 LINE L1 -574 5581 5476 5191 20 0 0 chr13 36551700 36552296 -83192602 + L1PA3 LINE L1 5557 6152 -3 1400 98 0 5 chr13 36552308 36552511 -83192387 + HUERS-P3b LTR ERV1 4774 4975 -2443 325 330 25 0 chr13 36552603 36552721 -83192177 - L2 LINE L2 -1176 2138 2018 1488 300 167 24 chr13 36552727 36553488 -83191410 - L2 LINE L2 -1834 1480 611 35 71 0 0 chr13 36553704 36553774 -83191124 + AT_rich Low_complexity Low_complexity 1 70 0 414 261 83 85 chr13 36553813 36554318 -83190580 - L1M4 LINE L1 -1804 4342 3839 216 111 0 0 chr13 36556757 36556793 -83188105 + (TA)n Simple_repeat Simple_repeat 2 37 0 309 89 0 0 chr13 36558071 36558116 -83186782 + (CA)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr13 36558582 36558609 -83186289 + AT_rich Low_complexity Low_complexity 1 27 0 252 209 0 0 chr13 36559399 36559442 -83185456 - MIR SINE MIR -171 91 49 21 36 0 0 chr13 36559511 36559539 -83185359 + AT_rich Low_complexity Low_complexity 1 28 0 237 308 9 28 chr13 36559617 36559724 -83185174 + MIR SINE MIR 45 149 -113 234 310 10 50 chr13 36560830 36560930 -83183968 + L3 LINE CR1 1480 1575 -2 294 73 0 0 chr13 36560971 36561012 -83183886 + (TG)n Simple_repeat Simple_repeat 1 41 0 224 294 0 0 chr13 36561142 36561193 -83183705 - L2 LINE L2 -8 3264 3214 222 208 0 0 chr13 36561913 36561966 -83182932 + (TA)n Simple_repeat Simple_repeat 2 54 0 214 244 89 0 chr13 36562719 36562764 -83182134 + MIR SINE MIR 91 139 -69 332 259 28 19 chr13 36563061 36563169 -83181729 + MIR SINE MIR 128 236 -26 1068 165 30 0 chr13 36563924 36564124 -83180774 - L1PA13 LINE L1 0 6163 5958 24 32 0 0 chr13 36564641 36564672 -83180226 + AT_rich Low_complexity Low_complexity 1 31 0 815 92 77 15 chr13 36564825 36564955 -83179943 - L1PA11 LINE L1 0 6174 6037 2224 124 96 15 chr13 36566600 36566996 -83177902 - MSTA LTR MaLR 0 428 1 277 251 104 67 chr13 36567188 36567359 -83177539 - MIR SINE MIR -73 189 20 551 296 19 51 chr13 36567634 36567850 -83177048 + MIR SINE MIR 54 262 0 253 261 15 15 chr13 36567980 36568045 -83176853 + MIR3 SINE MIR 126 190 -18 727 247 44 6 chr13 36568335 36568517 -83176381 + MER5A DNA MER1_type 1 189 0 228 111 0 0 chr13 36572295 36572331 -83172567 + (A)n Simple_repeat Simple_repeat 1 36 0 266 0 29 0 chr13 36573275 36573309 -83171589 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 892 115 0 8 chr13 36573309 36573428 -83171470 - AluJb SINE Alu -192 120 1 27 62 0 0 chr13 36574138 36574186 -83170712 + AT_rich Low_complexity Low_complexity 1 48 0 29 47 0 0 chr13 36575105 36575148 -83169750 + AT_rich Low_complexity Low_complexity 1 43 0 34 55 0 0 chr13 36575621 36575676 -83169222 + AT_rich Low_complexity Low_complexity 1 55 0 396 0 0 0 chr13 36575709 36575753 -83169145 + (CA)n Simple_repeat Simple_repeat 2 45 0 511 210 17 0 chr13 36578244 36578363 -83166535 - MER3 DNA MER1_type -4 205 85 330 382 36 18 chr13 36578388 36578613 -83166285 + L2 LINE L2 2594 2822 -492 334 300 56 50 chr13 36579540 36579720 -83165178 + L1MEd LINE L1 1061 1241 -4878 787 303 50 3 chr13 36579986 36580286 -83164612 + MER110 LTR ERV1 166 479 -12 24 32 0 0 chr13 36580393 36580424 -83164474 + AT_rich Low_complexity Low_complexity 1 31 0 2272 101 0 13 chr13 36580529 36580836 -83164062 + AluSg SINE Alu 1 303 -7 547 329 114 30 chr13 36580938 36581548 -83163350 - L2 LINE L2 -15 3298 2633 282 56 0 0 chr13 36582140 36582176 -83162722 + (TG)n Simple_repeat Simple_repeat 1 36 0 181 292 46 15 chr13 36582262 36582327 -83162571 - L2 LINE L2 -665 2649 2583 1339 62 11 0 chr13 36582697 36582873 -83162025 - L1PA4 LINE L1 0 6155 5978 643 352 39 21 chr13 36583697 36584032 -83160866 + L3 LINE CR1 1228 1568 -9 21 36 0 0 chr13 36584493 36584521 -83160377 + AT_rich Low_complexity Low_complexity 1 28 0 242 109 0 43 chr13 36584708 36584754 -83160144 + L1MB7 LINE L1 6132 6175 -9 241 245 0 0 chr13 36585300 36585353 -83159545 - MIR SINE MIR -139 123 71 203 125 25 0 chr13 36585607 36585647 -83159251 + (CAA)n Simple_repeat Simple_repeat 2 42 0 384 210 145 16 chr13 36585664 36585788 -83159110 - MIR SINE MIR -37 225 86 834 156 14 0 chr13 36586221 36586362 -83158536 + FLAM_C SINE Alu 1 143 0 224 217 0 17 chr13 36586363 36586423 -83158475 + (TAAAG)n Simple_repeat Simple_repeat 2 60 0 1006 160 5 50 chr13 36586424 36586624 -83158274 + AluJb SINE Alu 122 312 0 2244 90 0 10 chr13 36588342 36588642 -83156256 - AluY SINE Alu -14 297 1 304 256 128 39 chr13 36588854 36589010 -83155888 + MIR SINE MIR 18 187 -75 856 232 6 0 chr13 36589608 36589776 -83155122 - FAM SINE Alu -6 169 1 21 82 0 0 chr13 36589943 36589992 -83154906 + AT_rich Low_complexity Low_complexity 1 49 0 232 326 22 11 chr13 36591220 36591309 -83153589 - L2 LINE L2 -240 3032 2943 3646 194 135 91 chr13 36591516 36592060 -83152838 - L1MD3 LINE L1 -10 7985 7466 416 224 52 35 chr13 36592060 36592176 -83152722 - MLT1F1 LTR MaLR -447 120 3 3646 194 135 91 chr13 36592176 36592908 -83151990 - L1MD3 LINE L1 -529 7466 6516 365 360 139 35 chr13 36592941 36593316 -83151582 - L2 LINE L2 0 3272 2859 640 308 66 9 chr13 36593583 36593810 -83151088 - MIR SINE MIR 0 262 23 911 339 27 25 chr13 36597869 36598270 -83146628 + LTR16A LTR ERVL 16 417 -33 2227 298 29 22 chr13 36600682 36601282 -83143616 + L1MEc LINE L1 78 687 -5709 1864 135 6 49 chr13 36601282 36601607 -83143291 + AluSx SINE Alu 1 311 -1 2227 298 29 22 chr13 36601607 36601863 -83143035 + L1MEc LINE L1 687 940 -5456 773 269 77 67 chr13 36601874 36602469 -83142429 + L1MEc LINE L1 1038 1638 -4758 5690 254 59 21 chr13 36602475 36604629 -83140269 + L1M4 LINE L1 2795 5031 -1115 5854 208 40 6 chr13 36604629 36607143 -83137755 + L1PA7 LINE L1 2087 4516 -1638 207 0 0 0 chr13 36607143 36607166 -83137732 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5854 208 40 6 chr13 36607166 36607791 -83137107 + L1PA7 LINE L1 4516 5119 -1035 5854 66 3 0 chr13 36607791 36608522 -83136376 + L1PA7 LINE L1 5411 6152 -2 5854 208 40 6 chr13 36608522 36608551 -83136347 + L1PA7 LINE L1 5119 6152 -2 5488 125 14 0 chr13 36608563 36609403 -83135495 + L1PA13 LINE L1 5312 6163 0 * 10747 201 22 1 chr13 36609394 36610753 -83134145 + L1PA15 LINE L1 3025 4448 -1713 378 0 0 0 chr13 36610753 36610795 -83134103 + (CA)n Simple_repeat Simple_repeat 1 42 0 10747 201 22 1 chr13 36610795 36611837 -83133061 + L1PA15 LINE L1 4448 5467 -694 2270 70 13 40 chr13 36611837 36612211 -83132687 - L1PA3 LINE L1 0 6155 5792 17085 39 6 0 chr13 36612321 36615211 -83129687 + L1PA3 LINE L1 3245 6147 -8 228 111 0 0 chr13 36617784 36617820 -83127078 + (A)n Simple_repeat Simple_repeat 1 36 0 34 0 0 0 chr13 36618453 36618487 -83126411 + AT_rich Low_complexity Low_complexity 1 34 0 27088 49 38 3 chr13 36618668 36622167 -83122731 - L1P LINE L1 -2524 3622 1 4238 136 29 0 chr13 36622169 36622852 -83122046 + L1PA15 LINE L1 5460 6162 -3 4077 188 26 46 chr13 36622858 36624029 -83120869 + L1MB7 LINE L1 5016 6165 -19 540 243 15 120 chr13 36624107 36624295 -83120603 + L1MEc LINE L1 1685 1810 -4586 2032 125 3 14 chr13 36624295 36624592 -83120306 + AluSq SINE Alu 2 295 -18 540 243 15 120 chr13 36624592 36624803 -83120095 + L1MEc LINE L1 1810 2042 -4354 926 151 54 34 chr13 36624842 36625047 -83119851 - L1MA7 LINE L1 -863 5283 5075 * 5426 162 13 17 chr13 36625040 36626056 -83118842 + L1MA7 LINE L1 5278 6289 -2 680 244 41 55 chr13 36626085 36626133 -83118765 + L1MEc LINE L1 2102 2149 -4247 1826 113 47 14 chr13 36626133 36626435 -83118463 + AluSx SINE Alu 1 312 0 680 244 41 55 chr13 36626435 36626730 -83118168 + L1MEc LINE L1 2149 2440 -3956 1931 120 0 37 chr13 36628605 36628905 -83115993 - AluSx SINE Alu -23 289 1 27 0 0 0 chr13 36628907 36628934 -83115964 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chr13 36628956 36628980 -83115918 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2239 113 51 25 chr13 36629779 36630134 -83114764 + THE1B LTR MaLR 1 364 0 11059 105 19 0 chr13 36630134 36631683 -83113215 + THE1B-int LTR MaLR 1 1578 -2 2062 146 48 25 chr13 36631685 36632041 -83112857 + THE1B LTR MaLR 1 364 0 593 252 15 0 chr13 36632110 36632241 -83112657 + MER5A DNA MER1_type 1 133 -56 348 265 103 8 chr13 36632764 36632881 -83112017 - MIR SINE MIR -116 146 19 206 333 89 0 chr13 36632881 36632971 -83111927 + MIR SINE MIR 156 253 -9 436 332 101 14 chr13 36633427 36633644 -83111254 - MIR SINE MIR -12 250 15 257 263 26 0 chr13 36634414 36634490 -83110408 - MER116 DNA Mariner 0 80 3 29 47 0 0 chr13 36634491 36634534 -83110364 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr13 36634934 36634959 -83109939 + AT_rich Low_complexity Low_complexity 1 25 0 1692 227 60 20 chr13 36635262 36635799 -83109099 + L1MD2 LINE L1 5121 5686 -556 232 215 0 129 chr13 36635811 36635854 -83109044 + L1MD2 LINE L1 5914 5940 -419 2082 124 0 3 chr13 36635854 36636153 -83108745 + AluSx SINE Alu 1 298 -14 232 215 0 129 chr13 36636153 36636202 -83108696 + L1MD2 LINE L1 5940 5994 -365 237 132 0 0 chr13 36636212 36636250 -83108648 + (A)n Simple_repeat Simple_repeat 1 38 0 1518 209 59 15 chr13 36636340 36636680 -83108218 - MLT1A1 LTR MaLR -8 357 3 570 288 89 25 chr13 36636930 36637166 -83107732 + MIR SINE MIR 2 252 -10 357 82 0 0 chr13 36637546 36637595 -83107303 + (CA)n Simple_repeat Simple_repeat 2 50 0 3752 279 53 38 chr13 36637599 36638146 -83106752 + L1M3b LINE L1 2 540 -5810 2273 117 0 0 chr13 36638146 36638454 -83106444 - AluSp SINE Alu 0 313 6 3752 279 53 38 chr13 36638454 36639475 -83105423 + L1M3b LINE L1 540 1545 -4805 198 0 0 0 chr13 36639475 36639497 -83105401 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 3752 279 53 38 chr13 36639497 36641415 -83103483 + L1M3b LINE L1 1545 3200 -3150 547 164 3 1 chr13 36641411 36641518 -83103380 + L1MA6 LINE L1 6182 6294 -9 * 1042 150 23 134 chr13 36641541 36641876 -83103022 + L1MA7 LINE L1 5813 6120 -171 300 200 0 0 chr13 36641877 36641927 -83102971 + Tigger5 DNA MER2_type 1 50 -2273 474 167 13 0 chr13 36641934 36642012 -83102886 + Tigger5 DNA MER2_type 2245 2323 0 590 184 31 12 chr13 36642012 36642175 -83102723 + L1MA7 LINE L1 6124 6289 -2 419 203 24 11 chr13 36643083 36643204 -83101694 + L1MD2 LINE L1 5746 5876 -320 198 0 0 0 chr13 36643539 36643561 -83101337 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 23 33 0 0 chr13 36644587 36644617 -83100281 + AT_rich Low_complexity Low_complexity 1 30 0 225 194 0 15 chr13 36645347 36645414 -83099484 + L1M4 LINE L1 1283 1348 -5194 17629 173 53 27 chr13 36645436 36648746 -83096152 + L1MA2 LINE L1 14 3238 -4485 630 156 0 0 chr13 36648746 36648836 -83096062 - 5S rRNA rRNA -30 91 2 17629 173 53 27 chr13 36648836 36652949 -83091949 + L1MA2 LINE L1 3238 7723 0 510 300 57 28 chr13 36653123 36653609 -83091289 + L1M4 LINE L1 1612 2153 -4672 26 50 0 0 chr13 36653679 36653719 -83091179 + AT_rich Low_complexity Low_complexity 1 40 0 195 42 0 0 chr13 36656396 36656420 -83088478 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 320 250 0 13 chr13 36656613 36656689 -83088209 + L2 LINE L2 3186 3260 -12 189 107 0 0 chr13 36656690 36656718 -83088180 + (TG)n Simple_repeat Simple_repeat 2 29 0 2057 130 32 13 chr13 36656733 36657049 -83087849 + MER7A DNA MER2_type 1 320 -26 260 266 25 0 chr13 36657286 36657365 -83087533 + (TA)n Simple_repeat Simple_repeat 2 82 0 23 68 0 0 chr13 36660052 36660096 -83084802 + AT_rich Low_complexity Low_complexity 1 44 0 248 321 12 0 chr13 36667273 36667357 -83077541 - L1ME LINE L1 -439 5682 5598 646 296 18 93 chr13 36667925 36668140 -83076758 - L2 LINE L2 -3 3310 3135 2329 72 7 3 chr13 36668140 36668444 -83076454 + AluY SINE Alu 1 305 -6 646 296 18 93 chr13 36668444 36668616 -83076282 - L2 LINE L2 -178 3135 2952 * 909 280 96 23 chr13 36668599 36668995 -83075903 - L2 LINE L2 -571 2743 2319 649 272 10 26 chr13 36668996 36669191 -83075707 + MIR SINE MIR 71 262 0 359 238 12 0 chr13 36669577 36669657 -83075241 + MIR SINE MIR 172 252 -10 4497 54 0 0 chr13 36669766 36670324 -83074574 + LTR6B LTR ERV1 1 558 0 657 277 44 39 chr13 36671156 36671362 -83073536 + MIR SINE MIR 2 208 -54 444 346 5 16 chr13 36671886 36672074 -83072824 + MIR SINE MIR 25 210 -52 958 231 42 49 chr13 36672918 36673204 -83071694 + MER65B LTR ERV1 230 513 -18 21 0 0 0 chr13 36673596 36673617 -83071281 + AT_rich Low_complexity Low_complexity 1 21 0 363 0 0 0 chr13 36673617 36673661 -83071237 - L1PA6 LINE L1 -3 6151 6108 21 57 0 0 chr13 36673789 36673824 -83071074 + AT_rich Low_complexity Low_complexity 1 35 0 1544 208 3 10 chr13 36674280 36674592 -83070306 - AluJo SINE Alu 0 312 3 564 222 49 0 chr13 36674743 36674892 -83070006 - MSTD LTR MaLR -1 403 244 757 169 23 0 chr13 36674906 36675036 -83069862 - MSTD LTR MaLR -263 133 1 276 30 0 0 chr13 36677041 36677074 -83067824 + (CA)n Simple_repeat Simple_repeat 2 34 0 180 405 16 8 chr13 36679965 36680086 -83064812 + MIR SINE MIR 28 149 -113 215 281 62 0 chr13 36681760 36681824 -83063074 - MIR SINE MIR -129 133 66 2558 115 3 6 chr13 36681925 36682290 -83062608 + THE1B LTR MaLR 1 364 0 182 311 59 34 chr13 36682557 36682676 -83062222 - MIR SINE MIR -74 188 67 301 292 56 84 chr13 36682752 36682930 -83061968 + MER5B DNA MER1_type 2 174 -4 312 339 89 32 chr13 36685853 36685977 -83058921 + L2 LINE L2 3122 3252 -20 457 281 179 5 chr13 36686111 36686307 -83058591 - MIR SINE MIR 0 262 33 974 196 54 10 chr13 36686495 36686699 -83058199 - AluJb SINE Alu -9 303 91 367 322 0 0 chr13 36686999 36687114 -83057784 + MER103 DNA DNA 1 115 -51 452 299 63 111 chr13 36688123 36688394 -83056504 - MIR SINE MIR 0 262 5 22 0 0 0 chr13 36688553 36688575 -83056323 + AT_rich Low_complexity Low_complexity 1 22 0 2525 183 7 4 chr13 36688887 36689347 -83055551 - MLT1C LTR MaLR -4 463 3 452 336 111 29 chr13 36689469 36689948 -83054950 + L1 LINE L1 3975 4492 -1654 1573 163 69 14 chr13 36690225 36690514 -83054384 + MLT1A1 LTR MaLR 59 363 -2 26 50 0 0 chr13 36690614 36690654 -83054244 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr13 36690830 36690851 -83054047 + AT_rich Low_complexity Low_complexity 1 21 0 861 154 0 27 chr13 36691592 36691761 -83053137 - AluSg/x SINE Alu 0 300 136 370 266 53 0 chr13 36691920 36692014 -83052884 + MIR SINE MIR 1 99 -163 423 319 38 4 chr13 36692055 36692226 -83052672 + MIR SINE MIR 24 198 -64 1073 186 89 0 chr13 36693116 36693364 -83051534 - Tigger6 DNA MER2_type -2 1595 1326 1589 262 45 21 chr13 36693373 36693839 -83051059 + L1MDa LINE L1 23 499 -6041 * 1856 74 12 0 chr13 36693837 36694095 -83050803 + L1PA6 LINE L1 3853 4113 -2033 10053 61 0 6 chr13 36694476 36696538 -83048360 + L1PA6 LINE L1 4097 6154 0 2007 157 0 3 chr13 36696595 36696908 -83047990 + AluSx SINE Alu 1 312 0 546 215 69 73 chr13 36696909 36697169 -83047729 + L1MDa LINE L1 1411 1669 -4871 2226 95 0 0 chr13 36698058 36698375 -83046523 + AluSp SINE Alu 1 317 0 520 335 140 31 chr13 36699214 36699665 -83045233 - L2 LINE L2 -4 3309 2810 396 0 0 0 chr13 36701581 36701625 -83043273 + (CA)n Simple_repeat Simple_repeat 1 44 0 2342 193 56 6 chr13 36701882 36702363 -83042535 + MLT1D LTR MaLR 1 505 0 21 36 0 0 chr13 36703444 36703472 -83041426 + AT_rich Low_complexity Low_complexity 1 28 0 1541 163 29 97 chr13 36703815 36704196 -83040702 + MLT1A1 LTR MaLR 4 358 -7 260 242 5 172 chr13 36704227 36704413 -83040485 + L2 LINE L2 3109 3263 -50 319 350 91 54 chr13 36704453 36704804 -83040094 - L2 LINE L2 -28 3285 2922 2291 238 95 11 chr13 36705150 36705771 -83039127 + L1MDa LINE L1 64 736 -5804 1098 186 44 22 chr13 36705887 36706161 -83038737 + L1MDa LINE L1 1903 2182 -4358 1097 185 80 15 chr13 36706171 36706289 -83038609 + L1MDa LINE L1 2352 2461 -4228 203 0 37 0 chr13 36706289 36706316 -83038582 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1097 185 80 15 chr13 36706316 36706576 -83038322 + L1MDa LINE L1 2461 2799 -3890 1438 245 34 5 chr13 36706576 36706992 -83037906 - L1M4 LINE L1 -2347 4610 4183 3468 266 65 62 chr13 36706993 36707981 -83036917 - L1M4 LINE L1 -3516 3441 2457 1675 164 48 0 chr13 36707981 36708250 -83036648 - AluSx SINE Alu -25 287 6 3468 266 65 62 chr13 36708250 36708654 -83036244 - L1M4 LINE L1 -4500 2457 2056 3570 136 20 2 chr13 36708654 36709206 -83035692 - MER61E LTR ERV1 -4 565 4 3468 266 65 62 chr13 36709206 36711204 -83033694 - L1M4 LINE L1 -4901 2056 21 370 123 0 0 chr13 36711224 36711289 -83033609 + L1MD1 LINE L1 6177 6241 -1 3597 76 52 2 chr13 36712692 36713176 -83031722 + MER41A LTR ERV1 1 508 -46 277 299 155 6 chr13 36713771 36713945 -83030953 + MLT1I LTR MaLR 1 200 -209 2064 139 38 12 chr13 36714149 36714494 -83030404 - L1PB4 LINE L1 -31 6125 5772 229 302 31 31 chr13 36714506 36714519 -83030379 + MIR SINE MIR 110 122 -140 1966 142 20 0 chr13 36714519 36714821 -83030077 - AluSx SINE Alu -4 308 1 229 302 31 31 chr13 36714821 36714903 -83029995 + MIR SINE MIR 121 205 -57 227 83 28 0 chr13 36714921 36714957 -83029941 - L1MA4A LINE L1 -17 6286 6250 198 0 0 0 chr13 36714957 36714979 -83029919 + (CA)n Simple_repeat Simple_repeat 2 23 0 180 0 0 0 chr13 36714980 36715000 -83029898 + (TA)n Simple_repeat Simple_repeat 1 20 0 192 241 0 37 chr13 36715002 36715056 -83029842 + MIR SINE MIR 209 260 -2 3339 122 26 66 chr13 36715383 36715571 -83029327 - L1MA4A LINE L1 -5 6298 6104 1976 123 10 3 chr13 36715571 36715864 -83029034 - AluSx SINE Alu -17 295 1 3339 122 26 66 chr13 36715864 36716339 -83028559 - L1MA4A LINE L1 -199 6104 5662 596 346 178 5 chr13 36716480 36716908 -83027990 + L2 LINE L2 1448 1949 -1365 509 285 140 42 chr13 36720402 36720595 -83024303 + MIR SINE MIR 4 215 -47 204 40 0 0 chr13 36722313 36722338 -83022560 + (CA)n Simple_repeat Simple_repeat 1 25 0 317 278 122 41 chr13 36722341 36722586 -83022312 - L1ME LINE L1 -319 5802 5538 1268 201 10 7 chr13 36722587 36722886 -83022012 + L1MA4 LINE L1 6000 6299 -1 217 224 12 12 chr13 36722950 36723035 -83021863 + (CATATA)n Simple_repeat Simple_repeat 5 89 0 580 207 155 72 chr13 36724451 36724644 -83020254 + MER20 DNA MER1_type 8 216 -3 231 207 11 23 chr13 36725494 36725581 -83019317 + CT-rich Low_complexity Low_complexity 2 87 0 574 203 30 15 chr13 36725905 36726038 -83018860 - L1PB4 LINE L1 0 6156 6022 428 245 104 33 chr13 36726054 36726266 -83018632 - HAL1 LINE L1 -1190 1317 1091 399 316 23 63 chr13 36727759 36727933 -83016965 + MIR3 SINE MIR 15 181 -27 1484 197 149 101 chr13 36728244 36728928 -83015970 - LTR28 LTR ERV1 0 1020 304 456 284 28 32 chr13 36728947 36729197 -83015701 + L1 LINE L1 2859 3107 -3039 441 265 20 57 chr13 36729562 36729722 -83015176 - LTR1B LTR ERV1 -634 151 1 199 236 36 18 chr13 36731443 36731498 -83013400 - L3 LINE CR1 -704 873 818 1905 157 7 0 chr13 36732062 36732355 -83012543 + AluSx SINE Alu 4 298 -14 183 356 62 14 chr13 36733530 36733676 -83011222 + L2 LINE L2 3161 3313 0 1041 164 29 17 chr13 36734929 36735167 -83009731 + L1MA4 LINE L1 6041 6281 -19 212 0 36 0 chr13 36735595 36735623 -83009275 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 499 164 55 0 chr13 36736558 36736668 -83008230 + L1MA5 LINE L1 6175 6290 -10 250 374 33 0 chr13 36737930 36738021 -83006877 + L2 LINE L2 2980 3073 -240 336 102 0 0 chr13 36738296 36738345 -83006553 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 278 287 180 0 chr13 36738444 36738528 -83006370 - MARNA DNA Mariner -224 362 294 272 70 23 0 chr13 36738528 36738571 -83006327 + (TG)n Simple_repeat Simple_repeat 2 45 0 278 287 180 0 chr13 36738571 36738653 -83006245 - MARNA DNA Mariner -292 294 166 191 341 114 8 chr13 36740655 36740778 -83004120 - MIR3 SINE MIR -60 148 13 684 204 0 40 chr13 36741090 36741271 -83003627 + AluJb SINE Alu 137 311 0 21 0 0 0 chr13 36741728 36741749 -83003149 + AT_rich Low_complexity Low_complexity 1 21 0 2937 31 0 45 chr13 36743010 36743391 -83001507 - L1PA4 LINE L1 -1 6154 5791 621 341 148 6 chr13 36743771 36744123 -83000775 - L2 LINE L2 -399 2915 2514 322 308 0 0 chr13 36744320 36744424 -83000474 + LTR16A LTR ERVL 326 429 -21 185 0 40 0 chr13 36744547 36744572 -83000326 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1889 113 60 0 chr13 36744574 36744839 -83000059 - AluSx SINE Alu -31 281 1 252 170 0 0 chr13 36744935 36744988 -82999910 + A-rich Low_complexity Low_complexity 3 55 0 223 343 128 0 chr13 36746271 36746373 -82998525 - L2 LINE L2 0 3313 3199 9545 111 12 16 chr13 36746999 36748991 -82995907 - L1P4 LINE L1 -361 5807 3835 1882 100 100 6 chr13 36749029 36749316 -82995582 + L1PA10 LINE L1 5826 6134 -38 378 0 0 0 chr13 36749316 36749358 -82995540 + (TAAAA)n Simple_repeat Simple_repeat 1 42 0 1882 100 100 6 chr13 36749358 36749401 -82995497 + L1PA10 LINE L1 6134 6172 0 487 308 96 8 chr13 36750303 36750543 -82994355 - MIR SINE MIR 0 262 2 2236 119 3 0 chr13 36750700 36751011 -82993887 + AluSx SINE Alu 1 312 0 313 300 140 33 chr13 36751953 36752103 -82992795 + MIR SINE MIR 91 256 -6 1267 257 36 70 chr13 36752857 36753444 -82991454 + L1ME3A LINE L1 5595 6161 -9 307 330 132 35 chr13 36753778 36754181 -82990717 + L1M4 LINE L1 4590 5031 -1115 3034 288 80 30 chr13 36754296 36755306 -82989592 - L1MEc LINE L1 -4657 1739 612 276 30 0 0 chr13 36755306 36755339 -82989559 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3034 288 80 30 chr13 36755339 36755980 -82988918 - L1MEc LINE L1 -5784 612 5 2380 256 83 39 chr13 36755950 36756925 -82987973 - L1MC4 LINE L1 -404 7707 6690 * 4529 148 27 33 chr13 36757156 36757306 -82987592 - L1MA7 LINE L1 -207 6084 5935 2474 56 7 0 chr13 36757306 36757610 -82987288 + AluY SINE Alu 1 306 -5 4529 148 27 33 chr13 36757610 36758480 -82986418 - L1MA7 LINE L1 -356 5935 5065 838 288 4 18 chr13 36758665 36758891 -82986007 - MER58A DNA MER1_type 0 224 2 394 292 91 76 chr13 36759077 36759460 -82985438 - MLT1J1 LTR MaLR -7 439 51 415 241 200 0 chr13 36760096 36760241 -82984657 - MLT2E LTR ERVL -436 192 19 260 207 17 17 chr13 36760451 36760509 -82984389 + MIR3 SINE MIR 128 185 -23 180 77 0 0 chr13 36761532 36761558 -82983340 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 684 255 99 108 chr13 36761584 36762039 -82982859 + MLT1J LTR MaLR 1 451 -60 26 64 0 0 chr13 36762945 36762992 -82981906 + AT_rich Low_complexity Low_complexity 1 47 0 2998 176 26 11 chr13 36763147 36763716 -82981182 + L1PA16 LINE L1 5580 6157 -9 263 243 27 0 chr13 36763753 36763827 -82981071 + (TA)n Simple_repeat Simple_repeat 2 77 0 312 328 38 57 chr13 36764063 36764325 -82980573 + L1MEc LINE L1 80 336 -6204 777 305 24 71 chr13 36764584 36765122 -82979776 + L1MDa LINE L1 783 1295 -5235 876 186 62 0 chr13 36765167 36765328 -82979570 + FAM SINE Alu 3 173 -2 515 75 124 31 chr13 36765356 36765517 -82979381 + GA-rich Low_complexity Low_complexity 3 178 0 355 250 196 33 chr13 36765716 36765900 -82978998 + L1MDa LINE L1 1564 1777 -4763 250 240 184 9 chr13 36765927 36766144 -82978754 + L1MDa LINE L1 2326 2580 -3960 1927 153 0 0 chr13 36766151 36766454 -82978444 + AluSq SINE Alu 3 305 0 635 311 21 13 chr13 36767707 36767942 -82976956 + MIR SINE MIR 20 256 -6 307 249 99 99 chr13 36768479 36768680 -82976218 + L1MEc LINE L1 362 562 -6159 1619 240 37 21 chr13 36769130 36769513 -82975385 - MSTD LTR MaLR -2 394 6 357 262 65 62 chr13 36769560 36769709 -82975189 + L1MEc LINE L1 1001 1153 -5377 1446 157 125 20 chr13 36769709 36770014 -82974884 + MER44D DNA MER2_type 2 608 -1 357 262 65 62 chr13 36770014 36770139 -82974759 + L1MEc LINE L1 1153 1276 -5254 559 224 43 50 chr13 36770183 36770344 -82974554 - MLT1A1 LTR MaLR 0 365 206 646 236 25 105 chr13 36770378 36770692 -82974206 - L1M4 LINE L1 -2475 3671 3383 549 222 71 10 chr13 36770678 36770876 -82974022 + L1MC3 LINE L1 5265 5474 -768 * 1805 162 139 18 chr13 36770888 36771270 -82973628 - MSTA LTR MaLR 0 428 1 239 247 26 13 chr13 36771270 36771347 -82973551 + L1MC3 LINE L1 5909 5986 -1799 310 222 14 0 chr13 36771543 36771615 -82973283 + L1MD3 LINE L1 7904 7976 -19 611 99 0 9 chr13 36771747 36771858 -82973040 + (GGAA)n Simple_repeat Simple_repeat 1 110 0 481 275 5 9 chr13 36771878 36772063 -82972835 + MLT1E1 LTR MaLR 284 415 -211 476 252 0 84 chr13 36772131 36772274 -82972624 - MLT1A1 LTR MaLR -521 133 3 209 277 0 0 chr13 36772314 36772361 -82972537 - L3 LINE CR1 -687 890 844 3168 149 10 14 chr13 36772878 36773373 -82971525 + MER1A DNA MER1_type 37 529 0 640 303 29 0 chr13 36773482 36773657 -82971241 - LTR16A LTR ERVL -255 195 16 304 293 171 0 chr13 36773790 36773913 -82970985 - L3 LINE CR1 -393 1184 1041 267 320 50 20 chr13 36774226 36774426 -82970472 - L1ME LINE L1 -301 5820 5615 2305 95 0 3 chr13 36774854 36775159 -82969739 - AluY SINE Alu -7 304 1 1920 124 0 46 chr13 36775486 36775793 -82969105 - AluSg SINE Alu -17 293 1 351 44 0 0 chr13 36775840 36775885 -82969013 + (CA)n Simple_repeat Simple_repeat 2 46 0 305 47 23 0 chr13 36775890 36775933 -82968965 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 1841 224 94 22 chr13 36775933 36776432 -82968466 - MLT2B3 LTR ERVL -19 535 1 5765 181 5 8 chr13 36777189 36778857 -82966041 - L1MA6 LINE L1 -2 6298 4635 21 36 0 0 chr13 36779382 36779410 -82965488 + AT_rich Low_complexity Low_complexity 1 28 0 2760 22 0 0 chr13 36782712 36783027 -82961871 - AluYb8 SINE Alu -3 315 1 288 0 0 0 chr13 36783705 36783737 -82961161 + (CA)n Simple_repeat Simple_repeat 2 33 0 324 0 0 0 chr13 36784328 36784364 -82960534 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 213 302 47 23 chr13 36784779 36784865 -82960033 + L3 LINE CR1 1487 1574 -3 1410 224 62 40 chr13 36784971 36785426 -82959472 - MER101 LTR ERV1 0 474 10 7166 139 32 23 chr13 36786480 36787765 -82957133 + HSMAR2 DNA Mariner 2 1298 -4 2449 74 0 0 chr13 36787799 36788110 -82956788 - L1PA7 LINE L1 -23 6131 5821 435 301 129 31 chr13 36788212 36788696 -82956202 - L1ME LINE L1 -302 5868 5327 1611 149 27 0 chr13 36788698 36788994 -82955904 - L1MA4 LINE L1 -5 6295 5992 200 182 0 0 chr13 36790270 36790303 -82954595 + CT-rich Low_complexity Low_complexity 2 34 0 241 362 58 34 chr13 36790617 36790824 -82954074 + L2 LINE L2 2549 2760 -554 2398 48 20 0 chr13 36791268 36791390 -82953508 + AluY SINE Alu 1 119 -192 225 0 0 0 chr13 36791390 36791415 -82953483 + (TA)n Simple_repeat Simple_repeat 2 26 0 2398 48 20 0 chr13 36791415 36791587 -82953311 + AluY SINE Alu 119 301 -10 4041 105 12 25 chr13 36791838 36792476 -82952422 - L1PA10 LINE L1 -5 6163 5534 2525 152 4 6 chr13 36792476 36792949 -82951949 - L1P LINE L1 -2654 3492 3021 878 229 218 49 chr13 36793047 36793657 -82951241 - L1ME3A LINE L1 -2 6168 5456 1213 279 74 53 chr13 36793707 36793886 -82951012 - L1ME3A LINE L1 -758 5388 5214 1700 155 9 31 chr13 36793886 36794203 -82950695 + AluJo SINE Alu 1 310 -2 1213 279 74 53 chr13 36794203 36795202 -82949696 - L1ME3A LINE L1 -932 5214 4269 1891 122 0 21 chr13 36796920 36797199 -82947699 + AluSx SINE Alu 24 296 -16 24 77 0 0 chr13 36797377 36797429 -82947469 + AT_rich Low_complexity Low_complexity 1 52 0 31 0 0 0 chr13 36798004 36798035 -82946863 + AT_rich Low_complexity Low_complexity 1 31 0 220 297 13 26 chr13 36798529 36798684 -82946214 + A-rich Low_complexity Low_complexity 3 155 0 959 224 68 15 chr13 36799390 36799729 -82945169 - L1ME LINE L1 -827 5319 4963 22 0 0 0 chr13 36799758 36799780 -82945118 + AT_rich Low_complexity Low_complexity 1 22 0 442 205 43 43 chr13 36799836 36799997 -82944901 - L1M4 LINE L1 -798 5348 5188 988 188 0 0 chr13 36800018 36800178 -82944720 - AluJb SINE Alu -23 289 130 5834 213 48 45 chr13 36800190 36802813 -82942085 - L1MA8 LINE L1 -4 6287 3656 1351 164 13 0 chr13 36802813 36803045 -82941853 - MER46A DNA MER2_type 0 236 2 5834 213 48 45 chr13 36803045 36803195 -82941703 - L1MA8 LINE L1 -2635 3656 3508 12741 219 37 40 chr13 36803229 36805167 -82939731 - L1MA4A LINE L1 -5 7000 5057 1418 101 0 10 chr13 36805167 36805374 -82939524 - L1PA13 LINE L1 -1 6162 5958 12741 219 37 40 chr13 36805374 36805659 -82939239 - L1MA4A LINE L1 -1948 5057 4773 2415 46 0 3 chr13 36805659 36805986 -82938912 + AluY SINE Alu 3 328 0 12741 219 37 40 chr13 36805986 36808699 -82936199 - L1MA4A LINE L1 -2232 4773 2038 1915 220 5 23 chr13 36808698 36809094 -82935804 - L1MA4A LINE L1 -6459 390 2 * 564 308 111 14 chr13 36809097 36809448 -82935450 - L1M4 LINE L1 -2623 3523 3139 289 268 25 19 chr13 36809459 36809616 -82935282 - L1M4 LINE L1 -3129 3017 2860 2148 130 3 0 chr13 36809653 36809952 -82934946 + AluSx SINE Alu 3 302 -10 28 0 0 0 chr13 36809977 36810005 -82934893 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 36811054 36811078 -82933820 + AT_rich Low_complexity Low_complexity 1 24 0 30 83 0 0 chr13 36811437 36811509 -82933389 + AT_rich Low_complexity Low_complexity 1 72 0 223 188 0 47 chr13 36811515 36811579 -82933319 + A-rich Low_complexity Low_complexity 1 61 0 190 333 89 33 chr13 36811692 36811782 -82933116 - MIR SINE MIR -115 147 53 189 325 55 12 chr13 36811931 36812029 -82932869 - MIR SINE MIR -46 162 57 198 333 0 0 chr13 36812408 36812468 -82932430 - MIR SINE MIR 0 262 203 8713 153 30 11 chr13 36812481 36813736 -82931162 - L1MA2 LINE L1 0 6304 5074 1683 182 17 13 chr13 36813736 36814038 -82930860 - AluJb SINE Alu -9 303 1 8713 153 30 11 chr13 36814038 36815468 -82929430 - L1MA2 LINE L1 -1230 5074 3566 1076 168 173 0 chr13 36815478 36815704 -82929194 - MSTA LTR MaLR -163 265 1 285 339 28 9 chr13 36815808 36815917 -82928981 + L2 LINE L2 3188 3298 -15 500 128 202 0 chr13 36817039 36817133 -82927765 - AluSp/q SINE Alu -9 304 192 202 316 38 68 chr13 36817502 36817635 -82927263 - MER5A DNA MER1_type -26 163 35 184 280 80 0 chr13 36817603 36817653 -82927245 + MER5A DNA MER1_type 131 184 -5 * 1010 90 0 14 chr13 36818193 36818337 -82926561 - L1PA8 LINE L1 -9 6163 6022 5969 172 111 76 chr13 36818337 36818861 -82926037 - L1MC3 LINE L1 -26 7759 7255 266 243 87 29 chr13 36818861 36818964 -82925934 - MLT1F1 LTR MaLR -424 143 35 5969 172 111 76 chr13 36818964 36819437 -82925461 - L1MC3 LINE L1 -530 7255 6800 1718 194 69 75 chr13 36819437 36819624 -82925274 - MLT1D LTR MaLR -3 502 315 651 78 0 0 chr13 36819624 36819714 -82925184 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 1718 194 69 75 chr13 36819714 36820031 -82924867 - MLT1D LTR MaLR -190 315 1 5969 172 111 76 chr13 36820031 36820581 -82924317 - L1MC3 LINE L1 -985 6800 6051 21 0 0 0 chr13 36820631 36820652 -82924246 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 36821054 36821075 -82923823 + AT_rich Low_complexity Low_complexity 1 21 0 2671 70 119 5 chr13 36821268 36821670 -82923228 - LTR7 LTR ERV1 -2 448 1 2411 95 48 13 chr13 36821670 36822049 -82922849 - HERVH LTR ERV1 0 7713 7322 1339 130 28 9 chr13 36822047 36822263 -82922635 - HERVH LTR ERV1 -1894 5819 5600 * 4451 136 0 1 chr13 36822264 36822926 -82921972 - HERVH LTR ERV1 -2564 5149 4489 6042 82 15 2 chr13 36822929 36823772 -82921126 - HERVH LTR ERV1 -3720 3993 3140 * 19133 88 18 31 chr13 36823751 36826659 -82918239 - HERVH LTR ERV1 -4718 2995 125 622 130 0 116 chr13 36826670 36826816 -82918082 - LTR7 LTR ERV1 -319 131 3 8626 44 4 0 chr13 36828015 36829085 -82915813 + L1PA4 LINE L1 1449 2522 -3624 8046 30 7 3 chr13 36829065 36830626 -82914272 + L1PA4 LINE L1 4394 5956 -199 * 5856 261 146 37 chr13 36830726 36833317 -82911581 + L1PA15 LINE L1 98 2969 -4612 11728 207 18 12 chr13 36833417 36836247 -82908651 + L1PA15 LINE L1 3812 6648 -955 2127 144 131 11 chr13 36836247 36836629 -82908269 + MSTA LTR MaLR 1 428 0 11728 207 18 12 chr13 36836629 36837583 -82907315 + L1PA15 LINE L1 6648 7595 -8 41 0 0 0 chr13 36837688 36837729 -82907169 + AT_rich Low_complexity Low_complexity 1 41 0 461 181 28 28 chr13 36837729 36837955 -82906943 + (TAA)n Simple_repeat Simple_repeat 1 226 0 601 300 98 18 chr13 36837970 36838480 -82906418 + L1MEc LINE L1 1089 1639 -4757 2555 169 77 8 chr13 36838801 36839333 -82905565 - L1MA5 LINE L1 -2 6298 5730 731 172 8 0 chr13 36839974 36840096 -82904802 + MER20 DNA MER1_type 93 215 -4 2197 123 0 0 chr13 36841679 36841981 -82902917 - AluY SINE Alu -9 302 1 190 226 36 107 chr13 36842546 36842630 -82902268 + MIR SINE MIR 46 123 -139 750 268 56 9 chr13 36843402 36843615 -82901283 + MIR SINE MIR 25 247 -15 508 281 27 36 chr13 36845459 36845680 -82899218 + L1MC4 LINE L1 6474 6692 -1350 2685 232 54 7 chr13 36845683 36846296 -82898602 + MER82 DNA MER2_type 6 647 -6 596 218 115 13 chr13 36846301 36846457 -82898441 + L1MC4 LINE L1 6673 6844 -1198 1616 91 0 5 chr13 36846461 36846669 -82898229 - AluSx SINE Alu -105 207 1 558 317 38 6 chr13 36847808 36847991 -82896907 + MIR SINE MIR 40 228 -34 262 275 58 0 chr13 36848445 36848565 -82896333 - L1MA5 LINE L1 -736 5426 5300 218 204 0 0 chr13 36848734 36848778 -82896120 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 650 308 90 54 chr13 36848789 36849526 -82895372 - L1M4 LINE L1 -892 5254 4454 1489 186 43 14 chr13 36849526 36849806 -82895092 + AluJb SINE Alu 2 289 -23 650 308 90 54 chr13 36849806 36850300 -82894598 - L1M4 LINE L1 -1692 4454 3979 335 293 90 18 chr13 36850418 36850585 -82894313 - L1MEc LINE L1 -4084 2741 2563 43534 42 5 3 chr13 36851036 36857231 -82887667 + L1PA3 LINE L1 1 6204 0 1990 145 3 0 chr13 36857292 36857588 -82887310 + AluSq SINE Alu 1 297 -16 234 326 46 34 chr13 36857677 36857852 -82887046 - L1MEc LINE L1 -4850 1692 1516 2511 220 22 22 chr13 36858119 36858674 -82886224 + MER74A LTR ERVL 4 558 0 21 0 0 0 chr13 36860347 36860368 -82884530 + AT_rich Low_complexity Low_complexity 1 21 0 254 303 110 9 chr13 36860962 36861071 -82883827 - LTR16C LTR ERVL -8 483 364 288 117 43 5 chr13 36861107 36861169 -82883729 + AluY SINE Alu 1 44 -264 1913 105 19 0 chr13 36861294 36861561 -82883337 - AluSp SINE Alu -1 312 41 1934 290 80 23 chr13 36861566 36862300 -82882598 + L1MC/D LINE L1 95 870 -5670 1293 234 33 19 chr13 36862342 36862649 -82882249 + L1MA1 LINE L1 163 473 -7092 * 11088 162 72 61 chr13 36862638 36868480 -82876418 + L1MA1 LINE L1 1707 7618 -103 3967 220 81 21 chr13 36868491 36869631 -82875267 + L1MC/D LINE L1 1084 2323 -4217 351 0 0 0 chr13 36869631 36869670 -82875228 + (CA)n Simple_repeat Simple_repeat 2 40 0 3967 220 81 21 chr13 36869670 36869913 -82874985 + L1MC/D LINE L1 2323 2550 -3990 1062 218 91 40 chr13 36869920 36870549 -82874349 + L1MC/D LINE L1 4841 5437 -1199 2149 70 0 4 chr13 36870549 36870821 -82874077 + AluY SINE Alu 41 311 0 1062 218 91 40 chr13 36870821 36870945 -82873953 + L1MC/D LINE L1 5437 5553 -1083 2103 117 79 18 chr13 36870945 36871288 -82873610 - THE1B LTR MaLR 0 364 1 1062 218 91 40 chr13 36871288 36871360 -82873538 + L1MC/D LINE L1 5553 5970 -666 4529 184 88 159 chr13 36871360 36873249 -82871649 + MER52A LTR ERV1 1 1755 0 614 124 0 0 chr13 36873249 36873346 -82871552 + L1 LINE L1 4735 4831 -1315 30 27 0 0 chr13 36873798 36873835 -82871063 + AT_rich Low_complexity Low_complexity 1 37 0 7517 144 46 25 chr13 36873957 36874842 -82870056 - MER57-int LTR ERV1 -1042 6495 5630 333 0 0 0 chr13 36874842 36874879 -82870019 + (TA)n Simple_repeat Simple_repeat 1 37 0 * 366 23 0 0 chr13 36874878 36874921 -82869977 + (CA)n Simple_repeat Simple_repeat 2 44 0 7517 144 46 25 chr13 36874879 36876119 -82868779 - MER57-int LTR ERV1 -1907 5630 4299 360 43 0 0 chr13 36876432 36876478 -82868420 + (CA)n Simple_repeat Simple_repeat 2 47 0 957 224 0 45 chr13 36876545 36876813 -82868085 - L1MA4 LINE L1 -40 6260 6005 334 325 61 15 chr13 36876834 36877031 -82867867 - MIR SINE MIR -54 208 3 244 100 100 0 chr13 36878146 36878196 -82866702 - MLT2A1 LTR ERVL 0 453 399 2842 86 20 13 chr13 36878251 36878648 -82866250 - MLT2A1 LTR ERVL -44 400 1 1848 148 4 0 chr13 36878991 36879262 -82865636 + AluSg SINE Alu 22 293 -17 180 0 0 0 chr13 36879324 36879344 -82865554 + (T)n Simple_repeat Simple_repeat 1 20 0 4656 175 32 13 chr13 36881352 36882578 -82862320 + L1PA16 LINE L1 4915 6166 0 263 261 0 29 chr13 36883021 36883090 -82861808 - MIR SINE MIR 0 262 196 190 383 94 16 chr13 36883112 36883240 -82861658 - MIR3 SINE MIR -67 141 4 214 313 50 0 chr13 36883471 36883551 -82861347 + L2 LINE L2 3229 3312 -1 22 56 0 0 chr13 36884074 36884110 -82860788 + AT_rich Low_complexity Low_complexity 1 36 0 732 205 19 26 chr13 36884126 36884282 -82860616 - L1ME1 LINE L1 -26 6140 5986 1041 153 24 17 chr13 36884285 36884489 -82860409 + MER52C LTR ERV1 1 185 -1093 869 295 33 31 chr13 36884498 36884802 -82860096 - L1M4 LINE L1 -1113 5033 4726 1804 155 29 0 chr13 36884802 36885079 -82859819 + AluSx SINE Alu 1 285 -27 869 295 33 31 chr13 36885079 36885296 -82859602 - L1M4 LINE L1 -1420 4726 4511 1973 131 56 47 chr13 36885321 36885680 -82859218 + THE1B LTR MaLR 3 364 0 11600 98 3 1 chr13 36885680 36887257 -82857641 + THE1B-int LTR MaLR 1 1580 0 2166 105 43 65 chr13 36887257 36887586 -82857312 + THE1B LTR MaLR 1 323 -41 1943 158 10 0 chr13 36887586 36887896 -82857002 - AluSq SINE Alu 0 313 1 2166 105 43 65 chr13 36887896 36887937 -82856961 + THE1B LTR MaLR 323 363 -1 827 127 0 0 chr13 36888066 36888184 -82856714 - THE1-int LTR MaLR -255 1325 1208 287 316 0 8 chr13 36888183 36888300 -82856598 - L1M4 LINE L1 -1778 4368 4253 * 1756 180 91 14 chr13 36888317 36888733 -82856165 - L1MC2 LINE L1 -1 6343 5896 3329 153 38 10 chr13 36888886 36889246 -82855652 - L1MC2 LINE L1 -492 5852 5463 2069 164 48 3 chr13 36889246 36889619 -82855279 + MLT1B LTR MaLR 1 390 0 3329 153 38 10 chr13 36889619 36889890 -82855008 - L1MC2 LINE L1 -881 5463 5201 651 360 51 30 chr13 36889889 36890414 -82854484 - L1MEc LINE L1 -5779 617 82 * 512 177 0 9 chr13 36890800 36890913 -82853985 + GA-rich Low_complexity Low_complexity 1 112 0 10462 35 0 0 chr13 36893324 36895392 -82849506 + L1PA3 LINE L1 4109 6167 0 26 0 0 0 chr13 36895422 36895448 -82849450 + AT_rich Low_complexity Low_complexity 1 26 0 1075 236 55 63 chr13 36895550 36896007 -82848891 - L1ME2 LINE L1 -278 5886 5434 322 308 77 0 chr13 36896129 36896259 -82848639 + MIR SINE MIR 66 205 -57 285 323 116 0 chr13 36896405 36896560 -82848338 + L3 LINE CR1 604 776 -801 193 324 40 27 chr13 36896753 36896827 -82848071 + L3 LINE CR1 1069 1143 -434 835 415 70 61 chr13 36897195 36897622 -82847276 - Tigger2 DNA MER2_type -2 2716 2 21 36 0 0 chr13 36898770 36898798 -82846100 + AT_rich Low_complexity Low_complexity 1 28 0 5411 202 17 11 chr13 36898868 36900306 -82844592 + L1PA16 LINE L1 4123 5565 -600 12327 47 12 1 chr13 36900326 36902613 -82842285 + L1PA5 LINE L1 3854 6151 -3 3524 131 40 8 chr13 36902618 36903214 -82841684 + L1PA16 LINE L1 5550 6164 -2 2371 73 0 0 chr13 36903259 36903562 -82841336 - AluY SINE Alu -8 303 1 416 237 38 15 chr13 36904032 36904163 -82840735 - MER94 DNA DNA 0 134 1 411 276 199 32 chr13 36904228 36904384 -82840514 + MER5A DNA MER1_type 7 188 -1 23 33 0 0 chr13 36904612 36904642 -82840256 + AT_rich Low_complexity Low_complexity 1 30 0 457 324 97 31 chr13 36904892 36905275 -82839623 - L1ME3A LINE L1 -224 5946 5539 22 0 0 0 chr13 36905331 36905353 -82839545 + AT_rich Low_complexity Low_complexity 1 22 0 264 312 20 15 chr13 36905508 36905710 -82839188 - L1ME3A LINE L1 -940 5206 5004 4410 258 17 21 chr13 36905944 36907265 -82837633 + L1PA15 LINE L1 1294 2609 -3537 1656 185 110 0 chr13 36907300 36907592 -82837306 + MER1B DNA MER1_type 16 339 0 921 241 68 6 chr13 36907592 36907903 -82836995 + L1PA15 LINE L1 2647 2976 -3170 9140 208 38 11 chr13 36908135 36909702 -82835196 + L1PA15 LINE L1 2975 4498 -1667 2602 87 8 19 chr13 36909702 36910070 -82834828 - THE1B LTR MaLR 0 364 1 9140 208 38 11 chr13 36910070 36910082 -82834816 + L1PA15 LINE L1 4498 4508 -1657 2102 67 14 25 chr13 36910082 36910365 -82834533 - AluY SINE Alu -11 300 21 9140 208 38 11 chr13 36910365 36910898 -82834000 + L1PA15 LINE L1 4508 5025 -1140 195 69 0 0 chr13 36910898 36910927 -82833971 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9140 208 38 11 chr13 36910927 36911949 -82832949 + L1PA15 LINE L1 5025 6165 0 309 266 123 34 chr13 36912057 36912350 -82832548 - L1ME3A LINE L1 -2631 3515 3197 1261 205 60 55 chr13 36912427 36912812 -82832086 - MLT1C LTR MaLR 0 467 81 23 33 0 0 chr13 36912973 36913003 -82831895 + AT_rich Low_complexity Low_complexity 1 30 0 392 365 38 0 chr13 36913512 36913723 -82831175 + MLT1J2 LTR MaLR 21 239 -211 1260 299 90 68 chr13 36915141 36915775 -82829123 + HAL1 LINE L1 427 1046 -1461 2674 89 35 15 chr13 36915775 36916170 -82828728 + L1PA10 LINE L1 5765 6167 -1 1260 299 90 68 chr13 36916170 36916182 -82828716 + HAL1 LINE L1 1046 1056 -1451 1471 207 14 7 chr13 36916182 36916472 -82828426 + AluJo SINE Alu 5 296 -16 1260 299 90 68 chr13 36916472 36917451 -82827447 + HAL1 LINE L1 1056 2088 -419 1233 162 20 0 chr13 36917585 36917789 -82827109 - MER2 DNA MER2_type -134 211 4 429 70 0 0 chr13 36917798 36917855 -82827043 + (CA)n Simple_repeat Simple_repeat 2 58 0 230 147 0 0 chr13 36917956 36917990 -82826908 - U2 snRNA snRNA -154 34 1 339 283 93 4 chr13 36917996 36918233 -82826665 + HAL1 LINE L1 2248 2505 -2 253 133 0 22 chr13 36918672 36918717 -82826181 - MER58 DNA MER1_type 0 2420 2377 2346 148 32 25 chr13 36918754 36919185 -82825713 - Tigger2a DNA MER2_type 0 434 1 381 43 0 0 chr13 36919194 36919241 -82825657 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 307 218 79 79 chr13 36919283 36919384 -82825514 - MER58 DNA MER1_type -114 101 1 348 333 22 11 chr13 36920160 36920343 -82824555 + L1MEd LINE L1 12 196 -5923 2164 142 108 5 chr13 36920647 36921035 -82823863 + MSTA LTR MaLR 1 428 0 228 351 39 13 chr13 36921310 36921464 -82823434 + HAL1 LINE L1 1397 1554 -953 236 234 16 16 chr13 36921662 36921790 -82823108 + (TA)n Simple_repeat Simple_repeat 1 128 0 11123 28 3 0 chr13 36921881 36923976 -82820922 - L1PA3 LINE L1 0 6155 4056 529 202 69 32 chr13 36924202 36924441 -82820457 - MER57A-int LTR ERV1 -2710 3621 1548 2167 160 56 134 chr13 36924441 36925105 -82819793 - LTR9 LTR ERV1 0 612 1 309 175 0 0 chr13 36925194 36925280 -82819618 - MER57A-int LTR ERV1 -3202 2889 1865 461 245 0 0 chr13 36925531 36925625 -82819273 - MER57A-int LTR ERV1 -2991 3340 3247 271 204 0 87 chr13 36925714 36925817 -82819081 - MER57A-int LTR ERV1 -3735 1388 1295 * 337 211 61 26 chr13 36925789 36925903 -82818995 - MER57A-int LTR ERV1 -4612 1986 1869 359 260 13 53 chr13 36925903 36926159 -82818739 - MER34C LTR ERV1 -143 442 155 3901 165 20 6 chr13 36926405 36927174 -82817724 - MER57A-int LTR ERV1 -6695 842 1 2289 156 31 0 chr13 36927174 36927565 -82817333 - MER57A LTR ERV1 0 403 1 26 30 0 0 chr13 36927868 36927901 -82816997 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr13 36928374 36928396 -82816502 + AT_rich Low_complexity Low_complexity 1 22 0 1771 122 79 4 chr13 36929807 36930086 -82814812 - AluSx SINE Alu -10 302 3 1631 152 40 25 chr13 36930423 36930746 -82814152 + MER4A LTR ERV1 1 328 -336 2965 102 12 0 chr13 36930806 36931207 -82813691 + MLT2A2 LTR ERVL 1 406 -47 258 0 118 0 chr13 36931259 36931293 -82813605 + MLT2A2 LTR ERVL 416 453 0 * 549 189 253 26 chr13 36931293 36931523 -82813375 + MER4C LTR ERV1 165 447 -18 494 339 16 32 chr13 36931843 36932032 -82812866 + MIR SINE MIR 47 232 -30 33 73 0 0 chr13 36932040 36932108 -82812790 + AT_rich Low_complexity Low_complexity 1 68 0 2100 207 52 2 chr13 36932366 36932772 -82812126 - MSTB LTR MaLR 0 426 1 235 275 22 138 chr13 36933347 36933485 -82811413 + MIR3 SINE MIR 82 203 -5 372 348 39 11 chr13 36934430 36934608 -82810290 + MIR SINE MIR 49 231 -31 2137 180 55 2 chr13 36934730 36935130 -82809768 - MSTB1 LTR MaLR -8 424 4 334 265 98 0 chr13 36937017 36937149 -82807749 - L1M4 LINE L1 -2950 3196 3052 12940 242 49 16 chr13 36937424 36942049 -82802849 + L1PA15 LINE L1 1 5415 -1401 2651 154 2 16 chr13 36942049 36942483 -82802415 - MSTA LTR MaLR 0 428 1 12940 242 49 16 chr13 36942483 36943931 -82800967 + L1PA15 LINE L1 5415 6814 -2 193 316 214 8 chr13 36945133 36945250 -82799648 - MIR SINE MIR -6 256 116 34 55 0 0 chr13 36945864 36945919 -82798979 + AT_rich Low_complexity Low_complexity 1 55 0 30429 48 34 8 chr13 36945975 36949912 -82794986 + L1P LINE L1 1 4038 -2108 486 0 0 0 chr13 36950603 36950657 -82794241 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 269 301 111 13 chr13 36951862 36952015 -82792883 - L1MC/D LINE L1 -2233 5575 5408 271 407 0 7 chr13 36953615 36953750 -82791148 - L2 LINE L2 -1 3271 3138 254 285 78 24 chr13 36953749 36953876 -82791022 + MIR3 SINE MIR 12 146 -67 * 3936 191 30 37 chr13 36954062 36955346 -82789552 - L1MB4 LINE L1 0 6180 4909 245 292 83 4 chr13 36955413 36955529 -82789369 - L1M4c LINE L1 -5710 936 642 21 36 0 0 chr13 36955981 36956009 -82788889 + AT_rich Low_complexity Low_complexity 1 28 0 267 81 50 40 chr13 36956505 36956604 -82788294 + (TA)n Simple_repeat Simple_repeat 1 100 0 4620 31 0 0 chr13 36957926 36958475 -82786423 - L1PA4 LINE L1 0 6155 5607 267 114 0 0 chr13 36959004 36959048 -82785850 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 390 274 41 123 chr13 36959056 36959421 -82785477 - L2 LINE L2 -20 3293 2959 1799 249 46 69 chr13 36959450 36960085 -82784813 - MLT1E2 LTR MaLR -6 620 1 193 248 314 9 chr13 36960085 36960190 -82784708 - L2 LINE L2 -378 2936 2800 362 328 32 0 chr13 36960190 36960315 -82784583 - L2 LINE L2 -458 2856 2728 23 33 0 0 chr13 36960412 36960442 -82784456 + AT_rich Low_complexity Low_complexity 1 30 0 506 210 19 70 chr13 36960718 36960875 -82784023 - MIR SINE MIR -21 241 93 285 255 0 39 chr13 36960875 36960977 -82783921 + L1MA9 LINE L1 6185 6282 -30 286 359 32 26 chr13 36961071 36961227 -82783671 - MIR SINE MIR -79 183 27 793 170 12 64 chr13 36961304 36961475 -82783423 - MER58A DNA MER1_type -3 221 60 4094 183 7 16 chr13 36961475 36961686 -82783212 - MER44D DNA MER2_type -1882 605 394 3035 195 16 67 chr13 36961686 36962414 -82782484 - LTR8 LTR ERV1 0 691 1 4094 183 7 16 chr13 36962414 36962601 -82782297 - MER44D DNA MER2_type -2093 394 207 2231 191 20 75 chr13 36962601 36963187 -82781711 + MLT2B3 LTR ERVL 1 554 0 4094 183 7 16 chr13 36963187 36963521 -82781377 - MER44D DNA MER2_type -2280 207 7 299 242 0 15 chr13 36963524 36963590 -82781308 - MER58A DNA MER1_type -42 65 1 662 266 51 65 chr13 36963609 36963843 -82781055 + L1ME3A LINE L1 5821 6050 -120 1254 139 0 23 chr13 36963843 36964059 -82780839 + L1PA15 LINE L1 5948 6158 -7 662 266 51 65 chr13 36964059 36964178 -82780720 + L1ME3A LINE L1 6050 6169 -1 435 337 50 0 chr13 36964336 36964538 -82780360 - MIR SINE MIR 0 262 51 3583 145 51 73 chr13 36964701 36965423 -82779475 - MER50 LTR ERV1 -28 706 1 218 306 62 62 chr13 36965958 36966118 -82778780 + L2 LINE L2 3151 3310 -3 831 196 57 10 chr13 36967048 36967243 -82777655 + L1MC4 LINE L1 7599 7713 -95 188 378 78 0 chr13 36968051 36968141 -82776757 - L2 LINE L2 -24 3248 3152 2215 237 86 9 chr13 36968235 36968884 -82776014 + L1MC3 LINE L1 6100 6798 -987 1143 243 39 3 chr13 36969995 36970279 -82774619 - MER67D LTR ERV1 -4 510 217 2462 165 20 41 chr13 36970289 36970829 -82774069 - L1MA9 LINE L1 -2 6310 5782 183 80 0 0 chr13 36970840 36970865 -82774033 + (CA)n Simple_repeat Simple_repeat 2 26 0 303 28 0 0 chr13 36970910 36970946 -82773952 + (TA)n Simple_repeat Simple_repeat 1 36 0 1144 137 71 0 chr13 36970956 36971168 -82773730 - L1MA9 LINE L1 -523 5789 5563 959 151 0 121 chr13 36971177 36971409 -82773489 - MER67D LTR ERV1 -296 218 15 242 369 25 8 chr13 36971620 36971742 -82773156 + MER5A DNA MER1_type 66 189 0 504 320 84 19 chr13 36971947 36972269 -82772629 + L1ME3A LINE L1 5807 6149 -21 2196 64 17 20 chr13 36972297 36972593 -82772305 + AluY SINE Alu 1 295 -16 650 386 6 6 chr13 36972723 36973044 -82771854 + LTR16B LTR ERVL 77 397 -67 235 323 21 11 chr13 36973195 36973288 -82771610 - L2 LINE L2 0 3313 3220 333 149 0 0 chr13 36973288 36973355 -82771543 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 311 266 114 93 chr13 36973355 36973645 -82771253 - L2 LINE L2 -824 2490 2195 579 240 8 8 chr13 36973939 36974068 -82770830 + FLAM_A SINE Alu 1 129 -4 278 294 127 0 chr13 36974564 36974690 -82770208 - MIR SINE MIR 0 262 121 881 249 24 40 chr13 36974962 36975339 -82769559 + L1ME1 LINE L1 3224 3594 -2552 2082 236 92 39 chr13 36975371 36975622 -82769276 + L1ME1 LINE L1 5317 5553 -613 1604 192 14 3 chr13 36975622 36975914 -82768984 + AluJo SINE Alu 6 300 -12 2082 236 92 39 chr13 36975914 36976451 -82768447 + L1ME1 LINE L1 5553 6147 -19 389 224 0 0 chr13 36976969 36977036 -82767862 + MER2 DNA MER2_type 278 344 -1 1078 181 78 47 chr13 36977233 36977648 -82767250 - MLT1D LTR MaLR 0 505 41 1906 156 3 0 chr13 36977648 36977937 -82766961 - AluSx SINE Alu -21 291 2 1078 181 78 47 chr13 36977937 36977980 -82766918 - MLT1D LTR MaLR -464 41 1 189 0 0 0 chr13 36979265 36979286 -82765612 + (T)n Simple_repeat Simple_repeat 1 21 0 543 273 44 54 chr13 36979905 36980110 -82764788 - LTR33 LTR ERVL -309 212 10 1636 300 97 22 chr13 36980112 36980782 -82764116 - HAL1 LINE L1 -68 2439 1820 501 103 13 0 chr13 36980782 36980860 -82764038 + MADE1 DNA Mariner 1 79 -1 1636 300 97 22 chr13 36980860 36980932 -82763966 - HAL1 LINE L1 -687 1820 1755 207 0 0 0 chr13 36980932 36980955 -82763943 + (TG)n Simple_repeat Simple_repeat 2 24 0 1636 300 97 22 chr13 36980955 36981190 -82763708 - HAL1 LINE L1 -752 1755 1388 222 264 0 0 chr13 36982296 36982349 -82762549 + (TG)n Simple_repeat Simple_repeat 1 53 0 22 0 0 0 chr13 36982869 36982891 -82762007 + AT_rich Low_complexity Low_complexity 1 22 0 401 221 11 21 chr13 36983318 36983413 -82761485 + MER81 DNA DNA 6 99 -15 554 350 34 0 chr13 36984877 36985054 -82759844 + MER91A DNA MER1_type 2 184 -12 1676 95 5 5 chr13 36986137 36986359 -82758539 + AluSx SINE Alu 1 222 -90 300 300 66 80 chr13 36989088 36990132 -82754766 + L1MEc LINE L1 786 1815 -4581 499 309 70 52 chr13 36990143 36990340 -82754558 + L1MEc LINE L1 1880 2072 -4324 239 54 27 0 chr13 36990340 36990377 -82754521 + (TG)n Simple_repeat Simple_repeat 2 39 0 499 309 70 52 chr13 36990377 36990638 -82754260 + L1MEc LINE L1 2072 2346 -4050 323 274 8 49 chr13 36990854 36991010 -82753888 - L1ME LINE L1 -5908 162 13 306 169 0 0 chr13 36991892 36991951 -82752947 + L1MA1 LINE L1 6244 6302 0 30 45 0 0 chr13 36991951 36991995 -82752903 + AT_rich Low_complexity Low_complexity 1 44 0 1095 283 106 45 chr13 36993542 36994101 -82750797 - MLT1E LTR MaLR 0 593 1 21 0 0 0 chr13 36994448 36994469 -82750429 + AT_rich Low_complexity Low_complexity 1 21 0 2358 99 0 13 chr13 36995085 36995399 -82749499 + AluY SINE Alu 1 310 -1 2200 97 16 13 chr13 36995424 36995733 -82749165 + AluSg SINE Alu 1 310 0 273 294 185 8 chr13 36995761 36995880 -82749018 - LTR50 LTR ERVL -612 183 44 575 273 118 51 chr13 36995918 36996273 -82748625 + LTR16A LTR ERVL 67 445 -5 1249 284 88 49 chr13 36996642 36997293 -82747605 - ERVL LTR ERVL -290 5474 4799 6059 75 157 38 chr13 36997533 36998580 -82746318 - MER11A LTR ERVK 0 1266 1 297 314 81 16 chr13 36998789 36998913 -82745985 - L2 LINE L2 -515 2799 2668 2076 158 42 34 chr13 36998977 36999524 -82745374 + MLT2A2 LTR ERVL 1 554 0 557 296 26 57 chr13 36999524 36999754 -82745144 - L2 LINE L2 -991 2323 2101 238 340 57 9 chr13 37000369 37000475 -82744423 - MER5B DNA MER1_type -50 128 18 3476 47 2 0 chr13 37000518 37000948 -82743950 + L1PA5 LINE L1 5720 6150 -4 390 322 65 50 chr13 37002164 37002363 -82742535 - MIR SINE MIR -15 247 46 420 291 54 73 chr13 37002507 37002749 -82742149 - L1M4 LINE L1 -4255 2570 2325 1266 209 95 4 chr13 37002749 37003022 -82741876 + AluJo SINE Alu 1 298 -14 420 291 54 73 chr13 37003022 37003301 -82741597 - L1M4 LINE L1 -4500 2325 2059 * 1899 260 67 39 chr13 37003299 37004524 -82740374 - L1MB7 LINE L1 -3 6181 4903 1156 314 17 101 chr13 37004580 37004988 -82739910 - MLT1A2 LTR MaLR 0 374 1 1172 237 65 67 chr13 37004993 37005305 -82739593 - MLT1D LTR MaLR 0 505 193 2129 130 7 3 chr13 37005305 37005612 -82739286 - AluSg SINE Alu -2 308 1 1172 237 65 67 chr13 37005612 37005776 -82739122 - MLT1D LTR MaLR -312 193 30 1141 248 60 86 chr13 37005798 37006821 -82738077 - L1M4 LINE L1 -4782 1864 875 605 231 26 6 chr13 37007242 37007398 -82737500 - MER57A LTR ERV1 -1 402 244 1637 67 0 0 chr13 37007398 37007608 -82737290 - L1PA8 LINE L1 -187 5944 5735 1545 101 0 0 chr13 37007608 37007824 -82737074 + L1PA8 LINE L1 5941 6158 -14 22 0 0 0 chr13 37007824 37007846 -82737052 + AT_rich Low_complexity Low_complexity 1 22 0 635 220 10 131 chr13 37007846 37008076 -82736822 - MER57B LTR ERV1 -160 274 44 773 296 54 25 chr13 37008097 37008414 -82736484 - MER31-int LTR ERV1 -491 7325 7000 1069 259 33 72 chr13 37009946 37010336 -82734562 - MER31-int LTR ERV1 -1338 6199 5825 3116 224 84 67 chr13 37010671 37012642 -82732256 - MER31-int LTR ERV1 -1492 3444 1959 437 206 37 19 chr13 37012831 37012938 -82731960 - MER34 LTR ERV1 -304 238 130 425 236 75 57 chr13 37013108 37013500 -82731398 - MER31-int LTR ERV1 -374 1412 1029 369 242 0 0 chr13 37013883 37013949 -82730949 - MER31-int LTR ERV1 -7238 299 234 1610 171 0 0 chr13 37014175 37014461 -82730437 - L1P LINE L1 -3774 2372 2087 2432 256 77 26 chr13 37014545 37015245 -82729653 + MER21B LTR ERV1 98 833 -30 22 0 0 0 chr13 37015291 37015313 -82729585 + AT_rich Low_complexity Low_complexity 1 22 0 1481 139 4 0 chr13 37015916 37016153 -82728745 + L1PA13 LINE L1 5735 5972 -191 1180 268 100 33 chr13 37016760 37017189 -82727709 + MLT2B1 LTR ERVL 1 458 -62 646 247 60 11 chr13 37017603 37017785 -82727113 - MIR SINE MIR -4 258 68 625 328 37 72 chr13 37018697 37018897 -82726001 - L1MEc LINE L1 -5668 728 522 1957 153 0 0 chr13 37018897 37019185 -82725713 + AluSg SINE Alu 1 288 -22 625 328 37 72 chr13 37019185 37019496 -82725402 - L1MEc LINE L1 -5874 522 235 2532 56 0 3 chr13 37019581 37019886 -82725012 - AluY SINE Alu -7 304 1 628 127 48 8 chr13 37020227 37020353 -82724545 - L1MA2 LINE L1 0 6304 6174 1834 92 4 0 chr13 37020883 37021123 -82723775 - AluSx SINE Alu -15 297 57 266 280 93 0 chr13 37021412 37021519 -82723379 + LTR41 LTR ERVL 89 205 -568 368 198 47 28 chr13 37021720 37021826 -82723072 + LTR41 LTR ERVL 584 691 -82 5522 137 66 14 chr13 37021932 37022874 -82722024 + MSTA-int LTR MaLR 590 1580 0 1570 157 208 14 chr13 37022874 37023225 -82721673 + MSTA LTR MaLR 1 419 -9 373 310 84 25 chr13 37023843 37024046 -82720852 + L1 LINE L1 3128 3342 -2804 4999 236 59 32 chr13 37025108 37027510 -82717388 + L1PA11 LINE L1 1 3582 -4002 16681 160 20 0 chr13 37027511 37031346 -82713552 + L1PA11 LINE L1 3669 7610 -2 246 105 0 0 chr13 37031385 37031423 -82713475 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 2296 95 0 3 chr13 37031797 37032091 -82712807 + AluSp SINE Alu 1 293 -20 198 333 54 27 chr13 37032880 37032991 -82711907 - L2 LINE L2 -5 3308 3195 1067 115 25 0 chr13 37033175 37033332 -82711566 + AluSg/x SINE Alu 136 296 -16 246 32 0 0 chr13 37033336 37033367 -82711531 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2333 85 7 0 chr13 37033465 37033772 -82711126 + AluSc SINE Alu 1 309 0 740 348 0 0 chr13 37033859 37034080 -82710818 - MIR SINE MIR -30 232 12 4138 244 39 66 chr13 37034399 37036040 -82708858 + L1MB8 LINE L1 19 1615 -4927 729 201 0 7 chr13 37036041 37036180 -82708718 + FRAM SINE Alu 1 132 -44 765 176 0 0 chr13 37036206 37036331 -82708567 - FLAM_C SINE Alu -18 125 1 1057 223 11 26 chr13 37036331 37036596 -82708302 + L1MB8 LINE L1 4113 4373 -2271 * 1533 257 56 21 chr13 37036593 37037165 -82707733 + L1MB8 LINE L1 4942 5533 -1111 2071 200 50 43 chr13 37037176 37037294 -82707604 + L1MB8 LINE L1 5753 5869 -813 632 184 0 64 chr13 37037294 37037435 -82707463 + FLAM_C SINE Alu 1 132 -1 2071 200 50 43 chr13 37037435 37037921 -82706977 + L1MB8 LINE L1 5869 6361 -321 403 91 0 65 chr13 37037960 37038037 -82706861 + FLAM_C SINE Alu 70 141 -2 1496 172 17 7 chr13 37038038 37038329 -82706569 + L1MB8 LINE L1 6377 6670 -6 4126 173 19 55 chr13 37038402 37039157 -82705741 + L1MB4 LINE L1 5243 5955 -225 2171 88 35 0 chr13 37039157 37039440 -82705458 + AluSg SINE Alu 1 293 -17 4126 173 19 55 chr13 37039440 37039659 -82705239 + L1MB4 LINE L1 5955 6180 0 257 202 76 8 chr13 37041145 37041264 -82703634 - L1ME4a LINE L1 -11 6110 5984 25 31 0 0 chr13 37041376 37041408 -82703490 + AT_rich Low_complexity Low_complexity 1 32 0 2404 176 36 5 chr13 37041409 37041858 -82703040 + LTR24 LTR ERV1 5 467 0 1537 233 11 31 chr13 37041858 37042378 -82702520 + LTR24-int LTR ERV1 1 651 -4472 324 375 109 14 chr13 37042402 37042677 -82702221 + PABL_B-int LTR ERV1 379 679 -6079 422 209 0 33 chr13 37042691 37042782 -82702116 + PABL_B-int LTR ERV1 654 741 -4382 246 193 11 80 chr13 37043102 37043190 -82701708 + CT-rich Low_complexity Low_complexity 3 84 0 871 333 48 30 chr13 37044704 37045205 -82699693 + PABL_B-int LTR ERV1 153 662 -3985 288 222 16 0 chr13 37045306 37045369 -82699529 + PABL_B-int LTR ERV1 4173 4236 -4683 317 331 7 42 chr13 37046405 37046547 -82698351 + PABL_B-int LTR ERV1 5633 5769 -1353 1126 334 56 26 chr13 37046817 37047460 -82697438 + PABL_B-int LTR ERV1 6014 6675 -447 2741 154 57 23 chr13 37047932 37048497 -82696401 + LTR24B LTR ERV1 3 635 0 207 377 29 0 chr13 37048708 37048777 -82696121 - L2 LINE L2 -94 3178 3108 2157 155 137 42 chr13 37049103 37049644 -82695254 + LTR49 LTR ERV1 4 595 0 226 283 98 22 chr13 37050705 37050797 -82694101 + MIR SINE MIR 50 148 -114 857 171 19 6 chr13 37050887 37051045 -82693853 + MLT1A1 LTR MaLR 1 160 -205 921 288 113 15 chr13 37051355 37051755 -82693143 - LTR16A1 LTR ERVL 0 457 19 181 380 36 15 chr13 37052270 37052407 -82692491 - L2 LINE L2 -453 2861 2722 300 170 130 80 chr13 37053640 37053740 -82691158 - MIR SINE MIR -76 186 82 2162 118 0 3 chr13 37053769 37054074 -82690824 + AluSx SINE Alu 5 308 -4 21 0 0 0 chr13 37054153 37054174 -82690724 + AT_rich Low_complexity Low_complexity 1 21 0 1999 207 40 24 chr13 37054216 37054713 -82690185 - MLT1D LTR MaLR 0 505 1 1915 105 3 99 chr13 37054776 37055108 -82689790 + AluSq SINE Alu 1 300 -13 1952 156 3 0 chr13 37056156 37056451 -82688447 + AluSx SINE Alu 1 296 -16 278 233 62 85 chr13 37056953 37057082 -82687816 - L1ME LINE L1 -5900 170 45 4218 130 24 1 chr13 37057192 37057868 -82687030 + L1PA16 LINE L1 5465 6155 -11 32 26 0 0 chr13 37058721 37058760 -82686138 + AT_rich Low_complexity Low_complexity 1 39 0 12703 173 20 96 chr13 37058841 37060296 -82684602 + L1PA7 LINE L1 10 1573 -4888 2245 127 0 0 chr13 37060296 37060604 -82684294 + AluSx SINE Alu 1 308 -4 12703 173 20 96 chr13 37060604 37061756 -82683142 + L1PA7 LINE L1 1573 2203 -4258 6732 88 15 3 chr13 37061756 37063493 -82681405 + L1PA7 LINE L1 4699 6464 -5 12703 173 20 96 chr13 37063493 37065200 -82679698 + L1PA7 LINE L1 2203 4037 -2424 581 77 0 0 chr13 37066026 37066104 -82678794 + Alu SINE Alu 1 78 -232 2205 186 19 12 chr13 37066105 37066519 -82678379 + MER47B DNA MER2_type 2 418 0 915 316 104 38 chr13 37066572 37066640 -82678258 + L1ME LINE L1 817 879 -5517 19564 114 14 2 chr13 37066640 37070528 -82674370 + L1PA8 LINE L1 2243 6172 0 915 316 104 38 chr13 37070528 37071348 -82673550 + L1ME LINE L1 879 1814 -4582 243 107 27 80 chr13 37071477 37071552 -82673346 + A-rich Low_complexity Low_complexity 5 75 0 989 267 33 11 chr13 37071585 37072048 -82672850 + L1ME LINE L1 2176 2610 -3605 2073 121 7 0 chr13 37072048 37072351 -82672547 - AluSp SINE Alu 0 305 1 431 256 81 60 chr13 37072502 37072736 -82672162 + L1ME LINE L1 2683 2921 -3294 2411 138 4 21 chr13 37072737 37073397 -82671501 - L1P4 LINE L1 -615 5548 4896 15755 97 10 0 chr13 37073417 37074146 -82670752 + L1PA7 LINE L1 3058 3778 -2376 2342 89 0 0 chr13 37074146 37074438 -82670460 + AluY SINE Alu 1 292 -19 15755 97 10 0 chr13 37074438 37076798 -82668100 + L1PA7 LINE L1 3778 6150 -4 2693 114 0 0 chr13 37076805 37077200 -82667698 + L1PA13 LINE L1 5769 6163 0 294 259 44 0 chr13 37077214 37077349 -82667549 + L1ME LINE L1 2932 3072 -3143 1056 101 0 13 chr13 37077498 37077657 -82667241 + L1PA11 LINE L1 6018 6174 0 263 146 37 61 chr13 37077677 37077759 -82667139 + L1M LINE L1 5293 5372 -790 190 403 0 0 chr13 37078129 37078206 -82666692 - L2 LINE L2 -561 2753 2677 308 219 49 18 chr13 37078872 37079036 -82665862 + (TA)n Simple_repeat Simple_repeat 1 169 0 300 198 18 135 chr13 37079072 37079183 -82665715 + MER106B DNA MER1_type 5 102 -957 1858 316 82 40 chr13 37079282 37080026 -82664872 - L2 LINE L2 -44 3269 2557 1777 167 13 60 chr13 37080026 37080072 -82664826 + MLT1A1 LTR MaLR 1 48 -317 2271 107 0 3 chr13 37080072 37080372 -82664526 - AluSc SINE Alu -10 299 1 1777 167 13 60 chr13 37080372 37080708 -82664190 + MLT1A1 LTR MaLR 48 365 0 1858 316 82 40 chr13 37080708 37081152 -82663746 - L2 LINE L2 -756 2557 888 4904 205 35 32 chr13 37081153 37082312 -82662586 + L1MCa LINE L1 4 1166 -5260 * 12312 50 2 8 chr13 37082309 37083908 -82660990 - L1PA3 LINE L1 -3647 2499 910 23387 36 5 0 chr13 37083908 37087549 -82657349 + L1PA3 LINE L1 2508 6153 -2 1781 235 64 29 chr13 37087549 37088358 -82656540 + L1MCa LINE L1 1152 2019 -4407 226 103 0 0 chr13 37088358 37088426 -82656472 - Alu SINE Alu 0 323 256 1411 154 20 20 chr13 37088430 37088676 -82656222 + AluJo SINE Alu 57 302 -10 7149 216 56 16 chr13 37088676 37090608 -82654290 + L1MCa LINE L1 2577 4585 -1841 5328 159 33 29 chr13 37090603 37091763 -82653135 + L1MA9 LINE L1 5135 6302 -10 * 4789 232 52 79 chr13 37091783 37094300 -82650598 + L1M4 LINE L1 2163 4610 -1536 209 298 0 0 chr13 37095228 37095285 -82649613 + L2 LINE L2 2583 2639 -675 193 348 76 0 chr13 37096637 37096729 -82648169 + L2 LINE L2 3180 3278 -35 259 263 113 12 chr13 37096755 37096835 -82648063 + MIR SINE MIR 172 259 -3 198 0 0 0 chr13 37097450 37097472 -82647426 + (T)n Simple_repeat Simple_repeat 1 22 0 564 386 96 6 chr13 37097555 37098153 -82646745 + L2 LINE L2 2631 3282 -31 249 57 0 0 chr13 37098156 37098191 -82646707 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 288 313 78 0 chr13 37098948 37099063 -82645835 + MIR SINE MIR 70 193 -69 28 0 0 0 chr13 37099177 37099205 -82645693 + AT_rich Low_complexity Low_complexity 1 28 0 888 333 89 43 chr13 37099396 37099497 -82645401 + L2 LINE L2 1527 1622 -1692 2368 106 0 0 chr13 37099497 37099809 -82645089 - AluSp SINE Alu -1 312 1 888 333 89 43 chr13 37099809 37100316 -82644582 + L2 LINE L2 1622 2189 -1125 2349 166 31 0 chr13 37100316 37100731 -82644167 - MSTA LTR MaLR 0 428 1 888 333 89 43 chr13 37100731 37100981 -82643917 + L2 LINE L2 2189 2426 -888 267 31 0 0 chr13 37101815 37101847 -82643051 + (TTG)n Simple_repeat Simple_repeat 2 33 0 557 250 15 8 chr13 37101881 37102013 -82642885 + ERVL LTR ERVL 1920 2052 -2944 1932 323 105 57 chr13 37102330 37104203 -82640695 + ERVL LTR ERVL 2479 4534 -1230 2453 138 44 10 chr13 37104203 37104615 -82640283 - MSTA LTR MaLR -2 426 1 1932 323 105 57 chr13 37104615 37104769 -82640129 + ERVL LTR ERVL 4534 4679 -1085 912 181 36 10 chr13 37104769 37105042 -82639856 - MLT1A2 LTR MaLR -2 372 4 501 331 23 8 chr13 37105544 37105810 -82639088 + ERVL LTR ERVL 4727 4996 0 2463 62 0 7 chr13 37105864 37106173 -82638725 + AluY SINE Alu 1 307 -4 407 265 7 52 chr13 37106173 37106304 -82638594 + LTR16B LTR ERVL 35 159 -305 659 264 64 21 chr13 37106340 37106575 -82638323 + LTR16B LTR ERVL 220 464 0 1263 296 52 28 chr13 37108017 37108699 -82636199 - L1ME3A LINE L1 -144 6095 5387 1813 160 6 6 chr13 37108766 37109078 -82635820 - AluJb SINE Alu 0 312 1 539 202 191 7 chr13 37109128 37109325 -82635573 + L1MA4 LINE L1 6067 6287 -10 1002 290 82 28 chr13 37109340 37109780 -82635118 - L1ME3A LINE L1 -2929 3286 2795 786 188 35 6 chr13 37109780 37109950 -82634948 - L1MC1 LINE L1 0 6333 6159 1002 290 82 28 chr13 37109950 37110188 -82634710 - L1ME3A LINE L1 -3420 2795 2571 383 294 19 39 chr13 37110256 37110499 -82634399 - L1MEc LINE L1 -3840 2375 2172 268 232 0 14 chr13 37110494 37110563 -82634335 - L1 LINE L1 -2191 3955 3888 * 551 308 91 14 chr13 37110610 37110896 -82634002 - MLT1I LTR MaLR -7 402 95 271 272 0 76 chr13 37111455 37111547 -82633351 - L2 LINE L2 0 3272 3188 4260 115 17 5 chr13 37112441 37113093 -82631805 - L1PA11 LINE L1 -4 6821 6162 3474 150 20 3 chr13 37113179 37113962 -82630936 - L1PA11 LINE L1 -662 6150 5359 1438 119 0 68 chr13 37113962 37114198 -82630700 - AluSc SINE Alu -9 300 81 4613 48 17 2 chr13 37114202 37114780 -82630118 - LTR14C LTR ERVK 0 587 1 982 192 35 0 chr13 37114781 37114984 -82629914 - L1PA11 LINE L1 -1436 5361 5152 * 1914 147 6 0 chr13 37114965 37115354 -82629544 - L1PA11 LINE L1 -4425 2372 1971 609 144 0 0 chr13 37115354 37115472 -82629426 + AluSg/x SINE Alu 190 307 0 657 210 64 56 chr13 37115564 37115797 -82629101 + MER106A DNA MER1_type 1 235 -1 379 313 122 26 chr13 37116083 37116313 -82628585 - MIR SINE MIR -9 253 2 527 114 13 0 chr13 37116768 37116847 -82628051 - MADE1 DNA Mariner 0 80 1 26 64 0 0 chr13 37116873 37116920 -82627978 + AT_rich Low_complexity Low_complexity 1 47 0 30 0 0 0 chr13 37116936 37116966 -82627932 + AT_rich Low_complexity Low_complexity 1 30 0 223 271 0 0 chr13 37117039 37117098 -82627800 + CT-rich Low_complexity Low_complexity 3 61 0 333 319 68 43 chr13 37117109 37117272 -82627626 - MIR SINE MIR -76 186 20 378 287 60 60 chr13 37117898 37118065 -82626833 + MER5A DNA MER1_type 7 173 -16 3156 218 22 87 chr13 37118479 37120370 -82624528 + L1ME2 LINE L1 11 2115 -4826 685 150 0 0 chr13 37120374 37120474 -82624424 + AluJ/FLAM SINE Alu 3 102 -210 216 0 0 0 chr13 37120493 37120517 -82624381 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 245 227 86 57 chr13 37120531 37120687 -82624211 + L1ME2 LINE L1 2225 2421 -4557 253 333 61 56 chr13 37120956 37121187 -82623711 - L2 LINE L2 -850 2464 2233 909 104 0 8 chr13 37121200 37121365 -82623533 - AluSg/x SINE Alu 0 322 159 2068 109 23 3 chr13 37121382 37121686 -82623212 + AluSx SINE Alu 3 312 0 250 406 64 5 chr13 37122062 37122249 -82622649 + MLT1K LTR MaLR 189 386 -202 325 148 25 25 chr13 37122298 37122379 -82622519 + CT-rich Low_complexity Low_complexity 2 82 0 22 94 0 0 chr13 37123153 37123217 -82621681 + AT_rich Low_complexity Low_complexity 1 64 0 210 154 0 0 chr13 37123402 37123441 -82621457 + T-rich Low_complexity Low_complexity 3 41 0 216 281 0 0 chr13 37123448 37123505 -82621393 + L2 LINE L2 3215 3271 -1 537 181 0 0 chr13 37123739 37123916 -82620982 + (TA)n Simple_repeat Simple_repeat 1 177 0 300 183 215 0 chr13 37124388 37124400 -82620498 - L1MA4A LINE L1 0 6303 6292 1435 171 96 42 chr13 37124400 37124756 -82620142 - L1PB4 LINE L1 -5 6151 5777 4296 225 59 57 chr13 37124869 37125825 -82619073 + L1ME2 LINE L1 4415 5368 -1591 1816 181 0 0 chr13 37125825 37126123 -82618775 - AluJo SINE Alu -14 298 1 4296 225 59 57 chr13 37126123 37127216 -82617682 + L1ME2 LINE L1 5368 6469 -490 2098 134 0 0 chr13 37127216 37127515 -82617383 + AluSx SINE Alu 4 302 -10 4296 225 59 57 chr13 37127515 37127898 -82617000 + L1ME2 LINE L1 6469 6850 -109 244 172 35 0 chr13 37127900 37127958 -82616940 + Charlie4 DNA MER1_type 1840 1899 -62 23 0 0 0 chr13 37128891 37128914 -82615984 + AT_rich Low_complexity Low_complexity 1 23 0 206 146 24 0 chr13 37128930 37128944 -82615954 + (TA)n Simple_repeat Simple_repeat 2 14 -29 189 0 0 0 chr13 37128944 37128965 -82615933 + (GA)n Simple_repeat Simple_repeat 2 22 0 206 146 24 0 chr13 37128965 37128991 -82615907 + (TA)n Simple_repeat Simple_repeat 14 43 0 2937 89 1 1 chr13 37129269 37129884 -82615014 + PABL_A LTR ERV1 1 660 0 1748 276 80 25 chr13 37131022 37132023 -82612875 - L1MEc LINE L1 -4098 2727 1510 498 33 0 0 chr13 37132023 37132083 -82612815 + (TG)n Simple_repeat Simple_repeat 1 60 0 1748 276 80 25 chr13 37132083 37132139 -82612759 - L1MEc LINE L1 -5315 1510 1459 1315 267 126 20 chr13 37132160 37132820 -82612078 - L1MEc LINE L1 -5290 1535 806 433 257 103 17 chr13 37132880 37133055 -82611843 - L1MEc LINE L1 -6170 655 466 242 258 15 0 chr13 37134034 37134100 -82610798 + (TA)n Simple_repeat Simple_repeat 2 68 0 320 216 62 72 chr13 37134100 37134197 -82610701 - L1MC4 LINE L1 -1334 6708 6613 29 47 0 0 chr13 37134219 37134262 -82610636 + AT_rich Low_complexity Low_complexity 1 43 0 1928 119 20 20 chr13 37134314 37134607 -82610291 - AluSx SINE Alu -19 293 1 1598 225 54 61 chr13 37135595 37136155 -82608743 - MER74B LTR ERVL -14 608 53 248 292 0 15 chr13 37138054 37138119 -82606779 - L2 LINE L2 0 3313 3250 22 0 0 0 chr13 37138576 37138598 -82606300 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 37138844 37138872 -82606026 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 37139184 37139210 -82605688 + AT_rich Low_complexity Low_complexity 1 26 0 3645 134 45 0 chr13 37139814 37140417 -82604481 + L1MC1 LINE L1 5704 6333 0 289 309 32 16 chr13 37143437 37143560 -82601338 + L2 LINE L2 3148 3272 0 994 318 172 32 chr13 37145298 37146171 -82598727 + L2 LINE L2 685 1679 -1635 193 235 0 0 chr13 37146226 37146277 -82598621 + L2 LINE L2 3263 3313 0 195 218 0 0 chr13 37146300 37146355 -82598543 + (TG)n Simple_repeat Simple_repeat 1 55 0 1992 131 20 0 chr13 37146571 37146876 -82598022 - AluY SINE Alu 0 311 1 26 50 0 0 chr13 37146958 37146998 -82597900 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chr13 37148538 37148561 -82596337 + (TTA)n Simple_repeat Simple_repeat 2 24 0 354 207 11 11 chr13 37148786 37148873 -82596025 + L1ME LINE L1 5548 5634 -487 215 324 0 63 chr13 37149323 37149434 -82595464 + MIR3 SINE MIR 2 105 -103 522 98 76 0 chr13 37150142 37150234 -82594664 - Tigger2 DNA MER2_type -187 2531 2433 275 243 233 0 chr13 37151476 37151579 -82593319 + HsTC2 DNA Tc2 1 127 -1771 357 296 61 8 chr13 37151631 37151763 -82593135 + HsTC2 DNA Tc2 1159 1297 -601 227 272 107 0 chr13 37151768 37151871 -82593027 + HsTC2 DNA Tc2 1638 1751 -147 2057 137 78 6 chr13 37152027 37152386 -82592512 - Tigger2 DNA MER2_type 0 2718 2334 189 0 0 0 chr13 37152517 37152538 -82592360 + (TG)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr13 37152538 37152560 -82592338 + AT_rich Low_complexity Low_complexity 1 22 0 425 169 90 0 chr13 37153999 37154088 -82590810 - MLT1L LTR MaLR -12 603 507 208 202 170 43 chr13 37154115 37154209 -82590689 + MIR SINE MIR 157 262 0 24 32 0 0 chr13 37154353 37154384 -82590514 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 37154595 37154618 -82590280 + AT_rich Low_complexity Low_complexity 1 23 0 217 132 0 0 chr13 37156923 37156961 -82587937 + (T)n Simple_repeat Simple_repeat 1 38 0 689 80 0 0 chr13 37156985 37157073 -82587825 - AluSc SINE Alu -116 193 106 1662 178 60 21 chr13 37157610 37157942 -82586956 + MER7A DNA MER2_type 2 344 -2 290 301 97 57 chr13 37158035 37158211 -82586687 - MER5A DNA MER1_type -4 185 3 5176 59 23 13 chr13 37158371 37159062 -82585836 + SVA Other Other 688 1385 -1 21 0 0 0 chr13 37160612 37160633 -82584265 + AT_rich Low_complexity Low_complexity 1 21 0 330 284 113 28 chr13 37161042 37161183 -82583715 - MIR SINE MIR -25 237 85 28 0 0 0 chr13 37162225 37162253 -82582645 + AT_rich Low_complexity Low_complexity 1 28 0 1769 157 193 0 chr13 37162509 37162872 -82582026 - Tigger2a DNA MER2_type -1 433 1 1782 117 79 41 chr13 37163923 37164264 -82580634 - HSMAR2 DNA Mariner -1 1301 948 7206 193 16 14 chr13 37164264 37165852 -82579046 - L1 LINE L1 -1435 4711 3121 6353 136 8 10 chr13 37165853 37167266 -82577632 + L1PB1 LINE L1 4747 6150 -1 6098 141 8 1 chr13 37167276 37168233 -82576665 - HSMAR2 DNA Mariner -337 965 2 1041 205 5 38 chr13 37168262 37168472 -82576426 - AluJo SINE Alu -25 287 85 367 292 52 36 chr13 37168957 37169149 -82575749 - MIR SINE MIR -57 205 11 2239 204 87 59 chr13 37169396 37169722 -82575176 + LTR8A LTR ERV1 34 349 -378 202 28 28 28 chr13 37169722 37169758 -82575140 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2239 204 87 59 chr13 37169758 37170106 -82574792 + LTR8A LTR ERV1 349 727 0 23 0 0 0 chr13 37170290 37170313 -82574585 + AT_rich Low_complexity Low_complexity 1 23 0 652 232 0 0 chr13 37170340 37170478 -82574420 - FLAM_C SINE Alu -3 140 3 2017 224 54 6 chr13 37170838 37171375 -82573523 + L1M4 LINE L1 3629 4191 -1955 1425 186 12 81 chr13 37171943 37172276 -82572622 - MLT1B LTR MaLR -15 375 66 214 295 211 21 chr13 37173478 37173668 -82571230 - MIR SINE MIR -6 256 31 1447 221 28 36 chr13 37173824 37174181 -82570717 - MLT1A1 LTR MaLR -11 354 1 1303 133 0 84 chr13 37174216 37174465 -82570433 - AluJo SINE Alu 0 312 85 873 230 119 13 chr13 37175068 37175294 -82569604 - MIR SINE MIR -1 261 12 857 219 16 65 chr13 37175782 37176028 -82568870 - MLT1A1 LTR MaLR -5 360 127 206 290 187 9 chr13 37176962 37177069 -82567829 + L2 LINE L2 3139 3264 -8 229 238 262 0 chr13 37177362 37177446 -82567452 - LTR24B LTR ERV1 -7 569 464 528 152 20 20 chr13 37177658 37177757 -82567141 - LTR24B LTR ERV1 -474 102 4 192 165 0 35 chr13 37177768 37177853 -82567045 + (CATTT)n Simple_repeat Simple_repeat 2 83 0 260 189 0 28 chr13 37177888 37178031 -82566867 + (CATTT)n Simple_repeat Simple_repeat 2 140 0 252 246 0 29 chr13 37178043 37178181 -82566717 + T-rich Low_complexity Low_complexity 3 136 0 830 269 56 41 chr13 37178230 37178572 -82566326 + L1ME LINE L1 5412 5758 -363 21 0 0 0 chr13 37178668 37178689 -82566209 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr13 37178719 37178756 -82566142 + AT_rich Low_complexity Low_complexity 1 37 0 2599 314 89 16 chr13 37179342 37180781 -82564117 - L2 LINE L2 0 3313 1767 4445 177 34 26 chr13 37180942 37182149 -82562749 - L1MB2 LINE L1 -2 6885 5672 2246 109 0 3 chr13 37182149 37182461 -82562437 - AluSx SINE Alu -1 311 1 4445 177 34 26 chr13 37182461 37182558 -82562340 - L1MB2 LINE L1 -1215 5672 5577 299 259 47 12 chr13 37183259 37183344 -82561554 - MIR SINE MIR 0 262 175 6475 164 49 20 chr13 37183960 37187524 -82557374 - L1MB2 LINE L1 -3091 3771 1 842 136 28 51 chr13 37187516 37187693 -82557205 - L1P LINE L1 -966 5180 5008 * 333 319 68 43 chr13 37188001 37188164 -82556734 + MIR SINE MIR 20 186 -76 223 271 0 0 chr13 37188175 37188234 -82556664 + GA-rich Low_complexity Low_complexity 3 61 0 30 0 0 0 chr13 37188307 37188337 -82556561 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr13 37188353 37188400 -82556498 + AT_rich Low_complexity Low_complexity 1 47 0 527 114 13 0 chr13 37188426 37188505 -82556393 + MADE1 DNA Mariner 1 80 0 379 313 122 26 chr13 37188960 37189190 -82555708 + MIR SINE MIR 2 253 -9 657 210 64 56 chr13 37189476 37189709 -82555189 - MER106A DNA MER1_type -1 235 1 608 144 0 0 chr13 37189801 37189919 -82554979 - AluSg/x SINE Alu 0 308 191 1914 146 7 0 chr13 37189919 37190289 -82554609 + L1PA11 LINE L1 1971 2353 -4444 6227 98 19 0 chr13 37190289 37191922 -82552976 + L1PA11 LINE L1 5152 6823 -2 246 105 0 0 chr13 37191960 37191998 -82552900 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 2261 95 0 3 chr13 37192372 37192666 -82552232 + AluSp SINE Alu 1 293 -20 204 333 54 27 chr13 37193455 37193566 -82551332 - L2 LINE L2 -5 3308 3195 1043 115 25 0 chr13 37193750 37193907 -82550991 + AluSg/x SINE Alu 136 296 -16 246 32 0 0 chr13 37193911 37193942 -82550956 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2297 85 7 0 chr13 37194040 37194347 -82550551 + AluSc SINE Alu 1 309 0 746 348 0 0 chr13 37194434 37194655 -82550243 - MIR SINE MIR -30 232 12 4221 246 38 65 chr13 37194974 37196615 -82548283 + L1M3 LINE L1 19 1615 -4927 613 212 15 7 chr13 37196616 37196753 -82548145 + FRAM SINE Alu 1 132 -44 707 168 8 8 chr13 37196781 37196906 -82547992 - FLAM_C SINE Alu -18 125 1 1016 231 15 26 chr13 37196906 37197170 -82547728 + L1M3 LINE L1 4113 4373 -2271 * 1593 258 56 21 chr13 37197165 37197739 -82547159 + L1M3 LINE L1 4940 5533 -1111 563 147 44 118 chr13 37197750 37197868 -82547030 + L1M3 LINE L1 5753 5851 -827 614 183 0 70 chr13 37197868 37198010 -82546888 + FLAM_C SINE Alu 1 132 -1 563 147 44 118 chr13 37198010 37198095 -82546803 + L1M3 LINE L1 5851 5941 -737 26 30 0 0 chr13 37198742 37198775 -82546123 + AT_rich Low_complexity Low_complexity 1 33 0 2797 0 0 3 chr13 37198827 37199135 -82545763 + AluYa5 SINE Alu 1 307 -4 21 0 0 0 chr13 37199281 37199302 -82545596 + AT_rich Low_complexity Low_complexity 1 21 0 1625 142 16 84 chr13 37200220 37200531 -82544367 + AluSx SINE Alu 1 290 -22 23 68 0 0 chr13 37201262 37201306 -82543592 + AT_rich Low_complexity Low_complexity 1 44 0 811 266 175 47 chr13 37202464 37202915 -82541983 - MLT1J LTR MaLR -2 509 1 795 235 16 11 chr13 37203966 37204153 -82540745 - MER5A DNA MER1_type 0 189 2 2298 84 0 3 chr13 37204730 37205027 -82539871 + AluSg SINE Alu 2 297 -13 199 355 25 25 chr13 37206118 37206239 -82538659 - L2 LINE L2 -339 2933 2813 244 286 76 8 chr13 37206573 37206692 -82538206 - LTR33A LTR ERVL -2 521 395 282 116 0 0 chr13 37206852 37206895 -82538003 + (CTG)n Simple_repeat Simple_repeat 1 43 0 1813 339 75 24 chr13 37207515 37208646 -82536252 - HERVL LTR ERVL -293 5361 4173 600 297 78 14 chr13 37208645 37208864 -82536034 - HERVL LTR ERVL -2553 3211 2979 * 753 310 115 38 chr13 37208966 37209881 -82535017 - HERVL LTR ERVL -2779 2875 1919 295 191 16 0 chr13 37211758 37211821 -82533077 - L1ME LINE L1 -253 5868 5805 337 198 49 25 chr13 37212094 37212175 -82532723 + L2 LINE L2 3227 3309 -4 210 330 45 23 chr13 37212260 37212348 -82532550 - MIR SINE MIR -102 106 17 25 51 0 0 chr13 37212425 37212464 -82532434 + AT_rich Low_complexity Low_complexity 1 39 0 391 257 5 102 chr13 37212729 37212916 -82531982 + L1ME LINE L1 1201 1369 -5578 2394 70 0 0 chr13 37213006 37213307 -82531591 - AluY SINE Alu -10 301 1 544 328 48 34 chr13 37213509 37214317 -82530581 + L1ME LINE L1 1331 2323 -4815 180 0 0 0 chr13 37214729 37214749 -82530149 + (A)n Simple_repeat Simple_repeat 1 20 0 841 294 70 46 chr13 37215132 37215700 -82529198 + L1ME3 LINE L1 393 974 -5096 * 2480 262 75 29 chr13 37215689 37215962 -82528936 + L1ME3 LINE L1 3812 4071 -2009 342 98 0 0 chr13 37215962 37216013 -82528885 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2480 262 75 29 chr13 37216013 37216893 -82528005 + L1ME3 LINE L1 4071 5018 -1062 329 298 13 13 chr13 37217019 37217177 -82527721 + L1ME3 LINE L1 5001 5158 -922 1291 229 108 25 chr13 37217203 37217712 -82527186 + L1ME3 LINE L1 5247 5794 -306 411 233 20 100 chr13 37217832 37217982 -82526916 + L1ME3 LINE L1 5838 5975 -121 33 66 0 0 chr13 37217982 37218043 -82526855 + AT_rich Low_complexity Low_complexity 1 61 0 25 65 0 0 chr13 37218104 37218150 -82526748 + AT_rich Low_complexity Low_complexity 1 46 0 235 175 16 63 chr13 37218309 37218372 -82526526 + MIR SINE MIR 154 213 -49 25 0 0 0 chr13 37219788 37219813 -82525085 + AT_rich Low_complexity Low_complexity 1 25 0 369 280 37 0 chr13 37219813 37219920 -82524978 + MIR SINE MIR 141 251 -11 1500 164 41 11 chr13 37220059 37220328 -82524570 - AluJo SINE Alu -35 277 1 2780 153 40 17 chr13 37220701 37221232 -82523666 + L1MC1 LINE L1 5780 6322 -11 1039 46 8 0 chr13 37221909 37222039 -82522859 - AluY SINE Alu -8 303 173 650 198 95 107 chr13 37222266 37222509 -82522389 + MER57B LTR ERV1 1 269 -163 2493 148 8 0 chr13 37222554 37222947 -82521951 - MER57A LTR ERV1 0 403 8 586 151 49 15 chr13 37222949 37223133 -82521765 - MER57A-int LTR ERV1 0 7537 7277 731 129 26 0 chr13 37223142 37223258 -82521640 - LTR54B LTR ERV1 -377 121 3 1916 151 14 0 chr13 37223272 37223551 -82521347 + AluSx SINE Alu 1 283 -29 7453 167 13 10 chr13 37223551 37224841 -82520057 - MER57A-int LTR ERV1 -419 7118 5825 6335 158 10 28 chr13 37225136 37225546 -82519352 - MER57A-int LTR ERV1 -1688 5849 5433 2366 85 0 0 chr13 37225546 37225841 -82519057 - AluSg SINE Alu -15 295 1 6335 158 10 28 chr13 37225841 37226597 -82518301 - MER57A-int LTR ERV1 -2104 5433 4704 603 62 0 0 chr13 37226597 37226677 -82518221 + Alu SINE Alu 220 299 -13 369 143 0 14 chr13 37226766 37226836 -82518062 + LTR23-int LTR ERV1 951 1019 -4104 2011 171 56 107 chr13 37226842 37227678 -82517220 - MER57A-int LTR ERV1 -2151 4180 1548 373 231 64 39 chr13 37227678 37227881 -82517017 - MER57A-int LTR ERV1 -3023 1913 1706 779 151 19 159 chr13 37227994 37228252 -82516646 - MER57A-int LTR ERV1 -2879 3452 3231 383 242 55 35 chr13 37228395 37228655 -82516243 - MER57A-int LTR ERV1 -3659 1978 1097 331 133 33 0 chr13 37228700 37228760 -82516138 - MER34C LTR ERV1 -369 216 155 2427 71 0 0 chr13 37228885 37229196 -82515702 - AluY SINE Alu 0 311 1 3975 203 13 31 chr13 37229313 37230171 -82514727 - MER57A-int LTR ERV1 -6695 842 1 605 193 0 0 chr13 37230171 37230280 -82514618 - MER57A LTR ERV1 0 403 295 1070 124 16 38 chr13 37230293 37230478 -82514420 - MER61A LTR ERV1 -1 342 162 408 83 0 12 chr13 37230599 37230718 -82514180 - MER61A LTR ERV1 -190 153 3 349 217 0 0 chr13 37230718 37230786 -82514112 + AluJ/FRAM SINE Alu 234 301 -1 959 294 22 45 chr13 37230818 37231488 -82513410 + MER57-int LTR ERV1 2357 6179 -1358 248 265 172 37 chr13 37232331 37232546 -82512352 + HAL1b LINE L1 1049 1292 -56 406 323 16 8 chr13 37234107 37234231 -82510667 + MIR SINE MIR 23 147 -115 6126 69 1 0 chr13 37236002 37236794 -82508104 - L1PA7 LINE L1 -7 6147 5355 * 8567 77 25 35 chr13 37236792 37238087 -82506811 + L1PA7 LINE L1 4073 5354 -792 2279 190 50 0 chr13 37239210 37239710 -82505188 - L1MB3 LINE L1 0 6183 5659 1574 163 0 83 chr13 37239806 37240143 -82504755 + AluJo SINE Alu 1 309 -3 21 36 0 0 chr13 37240163 37240191 -82504707 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr13 37240210 37240238 -82504660 + AT_rich Low_complexity Low_complexity 1 28 0 299 378 65 29 chr13 37240377 37240652 -82504246 - L2 LINE L2 -181 3091 2807 240 91 5 0 chr13 37242035 37242082 -82502816 - L1M4 LINE L1 -1136 5010 4963 215 149 64 0 chr13 37242364 37242411 -82502487 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 22 0 0 0 chr13 37243151 37243173 -82501725 + AT_rich Low_complexity Low_complexity 1 22 0 238 303 138 0 chr13 37243713 37243858 -82501040 + MLT1J2 LTR MaLR 45 209 -241 244 333 26 51 chr13 37244252 37244299 -82500599 + L2 LINE L2 3121 3168 -104 1654 219 22 3 chr13 37244299 37244655 -82500243 - MLT1A1 LTR MaLR 0 365 3 244 333 26 51 chr13 37244655 37244763 -82500135 + L2 LINE L2 3168 3272 0 2264 247 30 35 chr13 37244810 37245413 -82499485 - MER90 LTR ERV1 -14 600 1 200 296 99 25 chr13 37246375 37246456 -82498442 - L2 LINE L2 0 3272 3186 1142 174 13 49 chr13 37246545 37246609 -82498289 - MLT1D LTR MaLR -3 502 437 1854 142 0 0 chr13 37246609 37246883 -82498015 + AluSx SINE Alu 17 290 -22 1142 174 13 49 chr13 37246883 37247042 -82497856 - MLT1D LTR MaLR -68 437 287 5639 190 66 15 chr13 37247090 37249072 -82495826 - L1MC1 LINE L1 0 6333 4243 616 142 14 170 chr13 37249137 37249349 -82495549 - MLT1D LTR MaLR -446 180 2 256 397 17 9 chr13 37249910 37250026 -82494872 + L2 LINE L2 3154 3270 -2 752 284 96 11 chr13 37250671 37250953 -82493945 + L2 LINE L2 2534 2839 -475 667 163 8 0 chr13 37251959 37252082 -82492816 - L1MB8 LINE L1 -2 6176 6053 2268 102 3 0 chr13 37252082 37252387 -82492511 - AluSq SINE Alu -7 306 1 2283 257 85 19 chr13 37252388 37253458 -82491440 - L1ME1 LINE L1 -201 5965 4813 803 115 0 0 chr13 37253458 37253571 -82491327 - AluJb SINE Alu -197 115 3 753 212 45 20 chr13 37253571 37253769 -82491129 - L1ME1 LINE L1 -1327 4819 4617 21 0 0 0 chr13 37254147 37254168 -82490730 + AT_rich Low_complexity Low_complexity 1 21 0 380 294 183 0 chr13 37254797 37254923 -82489975 - MER5A DNA MER1_type 0 189 41 226 329 69 32 chr13 37255329 37255545 -82489353 - L1P LINE L1 -1923 4223 4000 224 151 0 19 chr13 37255549 37255602 -82489296 + CT-rich Low_complexity Low_complexity 1 52 0 192 125 0 0 chr13 37255613 37255645 -82489253 + (TATATG)n Simple_repeat Simple_repeat 1 32 0 2420 257 54 49 chr13 37255878 37257272 -82487626 - L1ME1 LINE L1 -4 6231 4816 347 172 0 0 chr13 37257278 37257336 -82487562 + Tigger1 DNA MER2_type 1 58 -2360 210 216 0 0 chr13 37257339 37257376 -82487522 + polypyrimidine Low_complexity Low_complexity 2 38 0 497 250 0 9 chr13 37257383 37257495 -82487403 + Tigger1 DNA MER2_type 1028 1138 -1280 7603 162 38 8 chr13 37257496 37258826 -82486072 + Tigger1 DNA MER2_type 67 1436 -982 4502 136 33 11 chr13 37258810 37259560 -82485338 + Tigger1 DNA MER2_type 1652 2418 0 * 845 258 46 27 chr13 37259566 37259938 -82484960 - L1ME1 LINE L1 -1410 4805 4427 * 2694 264 93 94 chr13 37259921 37260301 -82484597 - L1ME1 LINE L1 -4260 2136 1757 2325 217 92 19 chr13 37260301 37260942 -82483956 - MER76 LTR ERV 0 688 1 2694 264 93 94 chr13 37260942 37261849 -82483049 - L1ME1 LINE L1 -4639 1757 849 1319 151 75 86 chr13 37261849 37262141 -82482757 - AluSx SINE Alu -23 289 1 2694 264 93 94 chr13 37262141 37262946 -82481952 - L1ME1 LINE L1 -5547 849 45 197 0 0 67 chr13 37263122 37263152 -82481746 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 25 0 0 0 chr13 37263408 37263433 -82481465 + AT_rich Low_complexity Low_complexity 1 25 0 285 29 0 0 chr13 37263525 37263559 -82481339 + (TG)n Simple_repeat Simple_repeat 2 35 0 204 143 95 0 chr13 37263835 37263898 -82481000 + (ATATG)n Simple_repeat Simple_repeat 2 70 0 21 0 0 0 chr13 37263979 37264000 -82480898 + AT_rich Low_complexity Low_complexity 1 21 0 367 332 29 72 chr13 37264204 37264412 -82480486 - L3 LINE CR1 -18 1559 1361 241 318 0 0 chr13 37265400 37265463 -82479435 + MIR SINE MIR 89 151 -57 6003 105 23 2 chr13 37265894 37267016 -82477882 + L1PA13 LINE L1 5017 6153 -10 604 327 0 0 chr13 37267207 37267372 -82477526 - L2 LINE L2 -962 2352 2188 627 320 184 35 chr13 37267530 37268040 -82476858 - L2 LINE L2 -1926 1388 803 1950 146 0 25 chr13 37268060 37268376 -82476522 + AluSq SINE Alu 1 308 -5 341 318 85 23 chr13 37269218 37269394 -82475504 - L1MC5 LINE L1 -48 7913 7727 2518 192 20 2 chr13 37269579 37270085 -82474813 - L1MD1 LINE L1 0 6242 5728 1259 290 12 8 chr13 37270191 37270670 -82474228 - L1MDa LINE L1 -2533 4007 3527 6865 210 109 87 chr13 37270725 37271839 -82473059 - L1MDa LINE L1 -3681 2859 1771 1022 158 25 0 chr13 37271839 37271997 -82472901 - FRAM SINE Alu -15 161 1 6865 210 109 87 chr13 37271997 37273480 -82471418 - L1MDa LINE L1 -4769 1771 26 26 30 0 0 chr13 37274672 37274705 -82470193 + AT_rich Low_complexity Low_complexity 1 33 0 4006 128 15 127 chr13 37276685 37278235 -82466663 - pTR5 LTR ERV1 0 2606 1524 1520 289 52 16 chr13 37278242 37278816 -82466082 - MLT1H1 LTR MaLR 0 555 6 324 257 0 29 chr13 37278842 37278912 -82465986 - MIR SINE MIR -164 98 31 208 163 23 0 chr13 37278944 37278987 -82465911 + GA-rich Low_complexity Low_complexity 1 44 0 232 350 26 8 chr13 37279101 37279218 -82465680 + L2 LINE L2 3194 3312 -1 1887 112 37 20 chr13 37280335 37280630 -82464268 - AluSq SINE Alu -13 300 1 2107 104 0 7 chr13 37281320 37281627 -82463271 + AluSx SINE Alu 1 305 0 24 0 0 0 chr13 37281913 37281937 -82462961 + AT_rich Low_complexity Low_complexity 1 24 0 2101 91 18 0 chr13 37282124 37282423 -82462475 - AluSq SINE Alu 0 307 4 2372 74 3 0 chr13 37282500 37282797 -82462101 - AluSp SINE Alu -15 298 1 184 361 14 0 chr13 37283047 37283119 -82461779 + L2 LINE L2 3185 3257 -15 595 257 209 26 chr13 37283320 37283631 -82461267 + LTR16C LTR ERVL 36 403 -88 21 36 0 0 chr13 37283717 37283745 -82461153 + AT_rich Low_complexity Low_complexity 1 28 0 1238 79 0 0 chr13 37284853 37285017 -82459881 - AluY SINE Alu 0 311 148 32 0 0 0 chr13 37285721 37285753 -82459145 + AT_rich Low_complexity Low_complexity 1 32 0 785 221 0 0 chr13 37285858 37286007 -82458891 - FRAM SINE Alu -23 153 5 329 324 54 0 chr13 37286021 37286169 -82458729 - MIR SINE MIR 0 262 107 335 209 34 95 chr13 37286174 37286380 -82458518 + MLT1E3 LTR MaLR 1 252 -402 822 308 21 27 chr13 37286768 37287099 -82457799 + MLT1E3 LTR MaLR 293 621 -3 249 192 82 27 chr13 37287603 37287676 -82457222 - MLT2D LTR ERVL 0 414 338 2129 116 0 7 chr13 37287677 37287987 -82456911 + AluSc SINE Alu 1 308 -1 1407 175 10 145 chr13 37288009 37288410 -82456488 - MLT2D LTR ERVL -65 349 3 345 343 73 28 chr13 37289596 37289774 -82455124 + MIR SINE MIR 32 217 -45 605 228 29 58 chr13 37289803 37289974 -82454924 + MER63A DNA MER1_type 45 210 0 492 165 11 11 chr13 37290011 37290102 -82454796 - L1MA9 LINE L1 -445 5867 5777 216 182 0 0 chr13 37290103 37290147 -82454751 + (TA)n Simple_repeat Simple_repeat 2 45 0 2038 165 16 3 chr13 37290212 37290582 -82454316 - L1MA9 LINE L1 -519 5793 5419 1382 176 17 26 chr13 37290582 37290883 -82454015 + L1MB1 LINE L1 5868 6166 -2 1678 174 90 16 chr13 37290977 37291344 -82453554 - MSTD LTR MaLR -2 394 1 243 380 0 10 chr13 37292154 37292254 -82452644 + MIR3 SINE MIR 85 183 -25 739 257 45 65 chr13 37292483 37292775 -82452123 - L2 LINE L2 0 3313 3028 2364 231 54 63 chr13 37292923 37293575 -82451323 - MLT1E1 LTR MaLR -9 632 1 791 313 39 0 chr13 37293575 37293831 -82451067 - L2 LINE L2 -521 2793 2528 290 304 29 65 chr13 37294863 37295001 -82449897 + MER5B DNA MER1_type 1 133 -45 1172 274 162 13 chr13 37295075 37295539 -82449359 + MLT1E2 LTR MaLR 83 615 -11 32 43 0 0 chr13 37295540 37295586 -82449312 + AT_rich Low_complexity Low_complexity 1 46 0 * 1228 183 14 4 chr13 37295578 37295824 -82449074 - L1MC2 LINE L1 -6 7777 6278 477 148 213 39 chr13 37295828 37295983 -82448915 - L1MC3 LINE L1 -388 7397 7216 304 295 0 0 chr13 37295992 37296070 -82448828 - MLT1F1 LTR MaLR -453 114 37 3780 221 38 1 chr13 37296071 37296917 -82447981 - L1MC3 LINE L1 -687 7098 6222 4579 241 37 23 chr13 37296918 37298424 -82446474 - L1M4 LINE L1 -1901 4245 2719 1359 240 8 31 chr13 37298455 37298842 -82446056 - L1MCa LINE L1 -5199 1365 988 1117 222 27 24 chr13 37298853 37299150 -82445748 - L1MCa LINE L1 -5166 879 582 1418 268 41 62 chr13 37299314 37299432 -82445466 - L1MCa LINE L1 -5490 555 436 2345 56 0 17 chr13 37299432 37299734 -82445164 - AluY SINE Alu -14 297 1 1418 268 41 62 chr13 37299734 37300182 -82444716 - L1MCa LINE L1 -5609 436 1 273 137 78 0 chr13 37300208 37300259 -82444639 - MER5B DNA MER1_type -123 55 1 278 235 58 13 chr13 37300637 37300747 -82444151 + MER5A DNA MER1_type 26 137 -41 199 170 50 0 chr13 37301467 37301567 -82443331 + (TA)n Simple_repeat Simple_repeat 2 106 0 340 264 240 0 chr13 37302886 37303011 -82441887 + MIR3 SINE MIR 50 204 -4 483 286 54 6 chr13 37303835 37304003 -82440895 - MER113 DNA MER1_type? 0 521 346 812 286 168 10 chr13 37304067 37304465 -82440433 - MLT1G LTR MaLR -120 470 10 1799 163 10 0 chr13 37304945 37305239 -82439659 - AluJo SINE Alu -8 304 8 284 226 280 0 chr13 37305320 37305506 -82439392 + MER113 DNA MER1_type? 89 326 -195 1143 278 178 6 chr13 37305704 37306186 -82438712 + MLT1G LTR MaLR 26 590 0 1057 271 65 35 chr13 37306197 37306966 -82437932 - L1ME3A LINE L1 -219 5951 5129 2015 100 13 17 chr13 37306971 37307266 -82437632 + AluSx SINE Alu 6 300 -8 198 103 0 0 chr13 37307266 37307295 -82437603 + (CAAGA)n Simple_repeat Simple_repeat 2 30 0 728 315 33 21 chr13 37307414 37307833 -82437065 + L1ME LINE L1 3625 4048 -2098 696 286 83 61 chr13 37308217 37308798 -82436100 + L2 LINE L2 2621 3228 -85 308 340 93 24 chr13 37308827 37309074 -82435824 + L1ME LINE L1 4520 4783 -1363 209 83 28 0 chr13 37309226 37309262 -82435636 + (TA)n Simple_repeat Simple_repeat 2 38 0 348 313 38 30 chr13 37309270 37309535 -82435363 + L1ME LINE L1 4967 5233 -913 744 255 30 46 chr13 37309580 37309882 -82435016 + L1ME LINE L1 5309 5605 -2203 23 33 0 0 chr13 37310154 37310184 -82434714 + AT_rich Low_complexity Low_complexity 1 30 0 750 125 0 47 chr13 37310229 37310357 -82434541 + AluSg/x SINE Alu 176 297 -15 241 350 68 0 chr13 37310963 37311080 -82433818 - L2 LINE L2 -3 3269 3145 220 208 21 0 chr13 37311643 37311691 -82433207 + GA-rich Low_complexity Low_complexity 2 50 0 21 0 0 0 chr13 37311764 37311785 -82433113 + AT_rich Low_complexity Low_complexity 1 21 0 2618 119 9 30 chr13 37311796 37312233 -82432665 + MSTA LTR MaLR 1 428 0 4566 234 94 44 chr13 37313533 37317499 -82427399 - L1MCb LINE L1 -2393 4171 1 417 376 76 21 chr13 37318493 37319100 -82425798 - L2 LINE L2 -1157 2157 1518 290 250 118 0 chr13 37319120 37319196 -82425702 + L2 LINE L2 3150 3234 -38 365 283 72 0 chr13 37319356 37319508 -82425390 + L1ME LINE L1 5654 5816 -305 255 204 0 0 chr13 37319529 37319578 -82425320 + L2 LINE L2 3265 3313 0 2936 70 0 3 chr13 37319904 37320289 -82424609 - L1PA13 LINE L1 -3 6160 5777 191 362 76 0 chr13 37321238 37321343 -82423555 + L2 LINE L2 2634 2746 -568 5267 192 59 64 chr13 37322611 37322734 -82422164 - MER45R DNA AcHobo -3 1578 1456 2157 119 0 0 chr13 37322734 37323029 -82421869 + AluSg SINE Alu 1 295 -15 5267 192 59 64 chr13 37323029 37324492 -82420406 - MER45R DNA AcHobo -125 1456 1 2282 181 26 17 chr13 37324561 37324862 -82420036 - MSTB LTR MaLR 0 426 118 1519 243 79 46 chr13 37324862 37325454 -82419444 + LTR9 LTR ERV1 1 612 0 2282 181 26 17 chr13 37325454 37325573 -82419325 - MSTB LTR MaLR -308 118 2 717 285 102 40 chr13 37325968 37326371 -82418527 + MLT1G LTR MaLR 158 585 -5 218 208 42 0 chr13 37326901 37326949 -82417949 + L2 LINE L2 3264 3313 0 256 282 15 122 chr13 37328438 37328569 -82416329 - L2 LINE L2 -7 3306 3190 1236 215 155 50 chr13 37329116 37329613 -82415285 + MLT1H LTR MaLR 1 549 0 22 35 0 0 chr13 37330033 37330062 -82414836 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 37330121 37330149 -82414749 + AT_rich Low_complexity Low_complexity 1 28 0 735 204 111 40 chr13 37330430 37330505 -82414393 - ORSL DNA AcHobo -7 268 200 186 43 0 0 chr13 37330505 37330528 -82414370 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 735 204 111 40 chr13 37330528 37330678 -82414220 - ORSL DNA AcHobo -75 200 27 30 0 0 0 chr13 37331311 37331341 -82413557 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr13 37331733 37331761 -82413137 + AT_rich Low_complexity Low_complexity 1 28 0 257 370 65 0 chr13 37331885 37332069 -82412829 - MER117 DNA MER1_type 0 197 2 276 30 0 0 chr13 37332483 37332516 -82412382 + (TG)n Simple_repeat Simple_repeat 1 33 0 425 138 12 0 chr13 37332516 37332596 -82412302 + GA-rich Low_complexity Low_complexity 2 82 0 249 350 70 7 chr13 37333461 37333604 -82411294 - MIR SINE MIR -100 162 11 * 258 341 149 28 chr13 37333576 37333831 -82411067 + L2 LINE L2 2244 2529 -785 394 134 12 12 chr13 37334384 37334466 -82410432 + CT-rich Low_complexity Low_complexity 3 84 0 23 78 0 0 chr13 37334605 37334656 -82410242 + AT_rich Low_complexity Low_complexity 1 51 0 254 351 108 7 chr13 37335111 37335259 -82409639 - LTR67 LTR ERVL -26 531 369 256 220 0 17 chr13 37335502 37335561 -82409337 - LTR67 LTR ERVL -498 59 2 185 94 31 0 chr13 37335697 37335729 -82409169 + (CA)n Simple_repeat Simple_repeat 2 34 0 210 333 49 0 chr13 37336708 37336789 -82408109 - L2 LINE L2 -2 3311 3227 744 293 13 26 chr13 37337107 37337339 -82407559 - MIR SINE MIR -15 247 19 955 286 112 30 chr13 37339296 37339733 -82405165 - MLT1J LTR MaLR 0 511 39 35 54 0 0 chr13 37339955 37340011 -82404887 + AT_rich Low_complexity Low_complexity 1 56 0 243 281 256 0 chr13 37341207 37341328 -82403570 + MIR SINE MIR 4 155 -107 221 311 57 66 chr13 37341590 37341696 -82403202 - MER5B DNA MER1_type -67 111 7 378 42 0 0 chr13 37341756 37341804 -82403094 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 1595 180 11 4 chr13 37341808 37342086 -82402812 - AluJo SINE Alu -32 280 1 303 344 152 57 chr13 37342093 37342176 -82402722 + L2 LINE L2 2826 2900 -372 252 0 0 0 chr13 37342176 37342204 -82402694 + (TA)n Simple_repeat Simple_repeat 2 29 0 303 344 152 57 chr13 37342204 37342527 -82402371 + L2 LINE L2 2900 3271 -1 216 214 269 62 chr13 37344562 37344707 -82400191 + MIR SINE MIR 88 262 0 903 241 15 71 chr13 37344742 37345008 -82399890 + MIR SINE MIR 7 257 -5 2221 120 0 0 chr13 37345156 37345465 -82399433 + AluSg SINE Alu 1 309 -1 285 309 194 6 chr13 37345497 37345672 -82399226 - MIR SINE MIR -6 256 49 21 57 0 19 chr13 37345690 37345721 -82399177 + AT_rich Low_complexity Low_complexity 1 32 -20 2150 105 0 3 chr13 37345721 37346006 -82398892 - AluSg SINE Alu -26 284 1 21 57 0 19 chr13 37346006 37346027 -82398871 + AT_rich Low_complexity Low_complexity 32 52 0 24 32 0 0 chr13 37346098 37346129 -82398769 + AT_rich Low_complexity Low_complexity 1 31 0 1965 121 0 0 chr13 37346588 37346853 -82398045 + AluSg1 SINE Alu 44 308 -1 2317 69 3 31 chr13 37347532 37347850 -82397048 - AluY SINE Alu -2 309 1 1272 278 72 33 chr13 37348272 37348757 -82396141 + LTR33 LTR ERVL 1 504 -17 242 349 55 14 chr13 37349895 37350041 -82394857 - MIR SINE MIR -102 160 9 203 375 66 29 chr13 37350916 37351052 -82393846 - L2 LINE L2 0 3272 3132 1537 255 45 102 chr13 37351362 37352032 -82392866 + MER45C DNA AcHobo 1 632 -321 298 196 0 18 chr13 37352028 37352084 -82392814 + MER45C DNA AcHobo 899 953 0 * 2420 223 102 42 chr13 37352276 37352471 -82392427 + L1MC4 LINE L1 6458 6640 -1402 423 0 0 0 chr13 37352471 37352518 -82392380 + (TG)n Simple_repeat Simple_repeat 2 48 0 2420 223 102 42 chr13 37352518 37353108 -82391790 + L1MC4 LINE L1 6640 7290 -752 1306 185 72 9 chr13 37353115 37353434 -82391464 - Charlie1 DNA MER1_type -136 2625 2287 11450 143 28 27 chr13 37353438 37356764 -82388134 - L1MA1 LINE L1 0 7721 4406 835 152 0 137 chr13 37356765 37356969 -82387929 + AluSg/x SINE Alu 137 312 0 10070 177 61 63 chr13 37356986 37357244 -82387654 - L1MA1 LINE L1 -3140 4425 4168 978 116 29 0 chr13 37357244 37357382 -82387516 - AluSc SINE Alu -13 296 155 10070 177 61 63 chr13 37357382 37359802 -82385096 - L1MA1 LINE L1 -3397 4168 1606 296 173 109 55 chr13 37359809 37359919 -82384979 - Charlie1 DNA MER1_type -472 2289 2174 4081 203 55 52 chr13 37359923 37360500 -82384398 - L1MC2 LINE L1 -8 6616 6042 2022 131 20 0 chr13 37360500 37360776 -82384122 + AluSq SINE Alu 1 113 -200 453 36 0 0 chr13 37360776 37360831 -82384067 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 2022 131 20 0 chr13 37360831 37361037 -82383861 + AluSq SINE Alu 113 313 0 4081 203 55 52 chr13 37361037 37361726 -82383172 - L1MC2 LINE L1 -582 6042 5347 2595 242 29 62 chr13 37361851 37362844 -82382054 - L1MC2 LINE L1 -1083 5343 4384 463 240 97 7 chr13 37362876 37363030 -82381868 - L1MC2 LINE L1 -6223 203 36 1346 299 36 26 chr13 37363075 37363734 -82381164 + L1MC4 LINE L1 7328 7993 -49 397 301 54 30 chr13 37363734 37363900 -82380998 + MIR SINE MIR 71 240 -22 207 356 40 10 chr13 37366240 37366341 -82378557 - L2 LINE L2 -1551 1763 1660 198 71 0 0 chr13 37366455 37366483 -82378415 + (TG)n Simple_repeat Simple_repeat 1 28 0 325 295 36 29 chr13 37366626 37366765 -82378133 + HERV16 LTR ERVL 1277 1416 -3580 259 253 23 11 chr13 37366962 37367049 -82377849 - HERV16 LTR ERVL -4017 979 892 291 214 84 69 chr13 37367666 37367797 -82377101 - MER20 DNA MER1_type -6 213 81 272 364 79 0 chr13 37367895 37368060 -82376838 - HERV16 LTR ERVL -4816 180 3 390 277 20 0 chr13 37368157 37368258 -82376640 - LTR16A LTR ERVL -114 336 234 236 311 22 11 chr13 37368302 37368392 -82376506 - LTR16A1 LTR ERVL -316 141 51 191 241 259 0 chr13 37368541 37368599 -82376299 - L2 LINE L2 -2 3270 3198 716 190 11 76 chr13 37369165 37369349 -82375549 + MER20 DNA MER1_type 47 218 -1 246 292 15 0 chr13 37371742 37371807 -82373091 + L2 LINE L2 3248 3313 0 1465 189 36 32 chr13 37371915 37372195 -82372703 - AluJb SINE Alu -31 281 1 13067 212 54 18 chr13 37372935 37375139 -82369759 + L1PA16 LINE L1 409 2532 -3691 1878 159 0 17 chr13 37375139 37375441 -82369457 + AluSx SINE Alu 1 297 -15 13067 212 54 18 chr13 37375441 37378762 -82366136 + L1PA16 LINE L1 2532 6220 -3 793 273 34 102 chr13 37379671 37380169 -82364729 - MLT1J LTR MaLR -22 489 26 26 50 0 0 chr13 37380331 37380371 -82364527 + AT_rich Low_complexity Low_complexity 1 40 0 215 229 34 0 chr13 37380497 37380615 -82364283 + (TA)n Simple_repeat Simple_repeat 1 122 0 1600 179 88 0 chr13 37380703 37381022 -82363876 - MER7A DNA MER2_type -1 345 1 357 298 17 7 chr13 37383363 37383503 -82361395 - MLT1A2 LTR MaLR -48 342 186 22 0 0 0 chr13 37383943 37383965 -82360933 + AT_rich Low_complexity Low_complexity 1 22 0 1818 142 0 51 chr13 37384727 37385053 -82359845 - AluSx SINE Alu 0 313 3 1078 155 225 5 chr13 37385157 37385498 -82359400 + MSTB1 LTR MaLR 1 457 0 1045 160 0 0 chr13 37385645 37385814 -82359084 + FRAM SINE Alu 1 168 -8 854 111 8 0 chr13 37385881 37386007 -82358891 + L1PA15 LINE L1 5828 5954 -211 2757 95 21 37 chr13 37386007 37386061 -82358837 - MLT2A1 LTR ERVL 0 444 391 403 33 33 0 chr13 37386061 37386122 -82358776 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 2757 95 21 37 chr13 37386122 37386498 -82358400 - MLT2A1 LTR ERVL -53 391 21 1163 174 9 5 chr13 37386502 37386720 -82358178 + L1PA15 LINE L1 5947 6165 0 1219 184 4 4 chr13 37388189 37388423 -82356475 - L1PA16 LINE L1 -5 6161 5928 1184 280 88 34 chr13 37388576 37389085 -82355813 - L2 LINE L2 0 3313 2787 203 340 113 14 chr13 37389187 37389328 -82355570 - L2 LINE L2 0 3313 3159 2049 129 10 0 chr13 37389458 37389752 -82355146 + AluSx SINE Alu 2 298 -14 749 288 52 9 chr13 37389834 37390063 -82354835 - MIR SINE MIR -10 252 14 23 0 0 0 chr13 37391009 37391032 -82353866 + AT_rich Low_complexity Low_complexity 1 23 0 378 0 0 0 chr13 37391047 37391089 -82353809 + (TG)n Simple_repeat Simple_repeat 2 43 0 595 271 34 83 chr13 37391243 37391509 -82353389 + MIR SINE MIR 10 262 0 1710 136 73 17 chr13 37391947 37392248 -82352650 - THE1C LTR MaLR -55 320 3 22 0 0 0 chr13 37392740 37392762 -82352136 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr13 37392866 37392896 -82352002 + (A)n Simple_repeat Simple_repeat 1 30 0 700 196 8 8 chr13 37393131 37393264 -82351634 - FLAM_A SINE Alu 0 133 1 228 310 15 31 chr13 37393584 37393710 -82351188 + MIR SINE MIR 5 131 -77 515 312 13 13 chr13 37393739 37393896 -82351002 + MIR SINE MIR 12 168 -94 6947 134 39 20 chr13 37394985 37395030 -82349868 + Tigger3b DNA MER2_type 1 44 -2984 2055 117 0 0 chr13 37395030 37395343 -82349555 + AluSc SINE Alu 1 313 0 6947 134 39 20 chr13 37395343 37396490 -82348408 + Tigger3b DNA MER2_type 44 1217 -14 505 325 32 30 chr13 37397346 37397566 -82347332 - MIR SINE MIR -16 246 28 6769 65 9 13 chr13 37398802 37399711 -82345187 - L1PA8 LINE L1 0 6172 5268 338 143 18 0 chr13 37399704 37399760 -82345138 + L1PA8 LINE L1 5206 5262 -884 * 307 242 0 15 chr13 37400104 37400170 -82344728 - L2 LINE L2 0 3313 3249 260 326 169 62 chr13 37400960 37401138 -82343760 + L2 LINE L2 3076 3272 0 1519 228 19 16 chr13 37401537 37401914 -82342984 - MLT1D LTR MaLR 0 505 128 288 291 19 0 chr13 37401942 37402045 -82342853 + L1MC4a LINE L1 4887 4991 -1155 1834 147 5 97 chr13 37402258 37402639 -82342259 - MER7A DNA MER2_type -1 345 2 1184 269 117 76 chr13 37402675 37404007 -82340891 + L1MC4a LINE L1 5319 6705 -1103 818 298 55 30 chr13 37404015 37404444 -82340454 - LTR16B LTR ERVL 0 464 1 342 237 26 0 chr13 37404447 37404523 -82340375 + L1MC4 LINE L1 6799 6876 -1166 5025 144 27 2 chr13 37404534 37405724 -82339174 + L1PA16 LINE L1 4954 6165 -1 21 57 0 0 chr13 37405761 37405796 -82339102 + AT_rich Low_complexity Low_complexity 1 35 0 2002 130 3 0 chr13 37405798 37406091 -82338807 + AluSp SINE Alu 1 294 -19 27 0 0 0 chr13 37406096 37406123 -82338775 + AT_rich Low_complexity Low_complexity 1 27 0 209 242 70 96 chr13 37406179 37406336 -82338562 + MIR3 SINE MIR 44 196 -12 303 241 69 11 chr13 37407478 37407565 -82337333 - L2 LINE L2 -32 3281 3190 220 262 14 83 chr13 37407565 37407710 -82337188 + L2 LINE L2 2372 2506 -808 2061 87 4 11 chr13 37407728 37408029 -82336869 - AluSx SINE Alu 0 305 7 214 270 32 0 chr13 37408824 37408887 -82336011 + L2 LINE L2 3207 3271 -1 660 332 59 59 chr13 37410078 37410572 -82334326 + L3 LINE CR1 1063 1556 -21 200 263 0 0 chr13 37412170 37412208 -82332690 + polypurine Low_complexity Low_complexity 6 43 0 271 238 75 116 chr13 37412357 37412504 -82332394 - MIR SINE MIR -22 240 100 22 80 0 0 chr13 37413448 37413498 -82331400 + AT_rich Low_complexity Low_complexity 1 50 0 399 273 136 26 chr13 37413966 37414120 -82330778 - L2 LINE L2 -5 3308 3138 277 358 22 15 chr13 37414139 37414273 -82330625 + MER115 DNA AcHobo 13 147 -546 2110 138 3 0 chr13 37414458 37414754 -82330144 - AluSq SINE Alu -16 297 1 339 219 64 11 chr13 37414763 37414925 -82329973 + LTR37A LTR ERV1 111 280 -188 201 226 0 0 chr13 37414948 37415001 -82329897 + (TA)n Simple_repeat Simple_repeat 2 54 0 23 33 0 0 chr13 37415154 37415184 -82329714 + AT_rich Low_complexity Low_complexity 1 30 0 209 368 96 0 chr13 37415184 37415320 -82329578 - L2 LINE L2 -230 3083 2935 22 0 0 0 chr13 37415655 37415677 -82329221 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 37415806 37415828 -82329070 + AT_rich Low_complexity Low_complexity 1 22 0 609 215 23 8 chr13 37415909 37416039 -82328859 - MSTD LTR MaLR -1 395 264 503 219 29 0 chr13 37416097 37416199 -82328699 - MSTD LTR MaLR -244 152 48 1851 184 72 3 chr13 37416199 37416558 -82328340 + MSTA LTR MaLR 1 384 -44 567 179 0 0 chr13 37416558 37416642 -82328256 - AluS SINE Alu -227 85 2 1479 131 0 0 chr13 37416642 37416848 -82328050 + AluSg/x SINE Alu 83 288 -22 265 174 0 0 chr13 37416870 37416916 -82327982 + MSTA LTR MaLR 383 428 0 405 77 0 0 chr13 37416916 37416968 -82327930 - MSTD LTR MaLR -344 52 1 486 0 0 0 chr13 37418389 37418443 -82326455 + (TG)n Simple_repeat Simple_repeat 2 55 0 688 293 101 77 chr13 37418604 37418949 -82325949 - L2 LINE L2 -5 3308 2948 825 206 61 88 chr13 37418949 37419357 -82325541 + MLT2C1 LTR ERVL 1 397 0 688 293 101 77 chr13 37419357 37419468 -82325430 - L2 LINE L2 -365 2948 2841 393 239 11 0 chr13 37419493 37419581 -82325317 - L2 LINE L2 -990 2324 2236 1666 218 43 5 chr13 37421392 37421763 -82323135 - MLT1B LTR MaLR 0 390 6 877 152 18 0 chr13 37422481 37422646 -82322252 - L1MA6 LINE L1 0 6300 6133 900 179 28 9 chr13 37422800 37423012 -82321886 - L1MA7 LINE L1 -9 6282 6067 21 0 0 0 chr13 37424115 37424136 -82320762 + AT_rich Low_complexity Low_complexity 1 21 0 208 380 40 20 chr13 37424382 37424482 -82320416 - MIR3 SINE MIR -97 111 10 4175 161 150 79 chr13 37425237 37425800 -82319098 + L1MC3 LINE L1 6495 7016 -769 292 291 0 0 chr13 37425800 37425879 -82319019 + MLT1F1 LTR MaLR 46 124 -443 4175 161 150 79 chr13 37425879 37426427 -82318471 + L1MC3 LINE L1 7016 7769 -16 318 212 51 68 chr13 37426455 37426573 -82318325 - L1MC4 LINE L1 -1338 6704 6589 223 317 33 0 chr13 37426619 37426679 -82318219 + L2 LINE L2 3173 3234 -38 1805 163 3 29 chr13 37426681 37426987 -82317911 - AluJo SINE Alu -13 299 2 198 128 0 0 chr13 37427787 37427826 -82317072 + (TC)n Simple_repeat Simple_repeat 2 40 0 270 233 14 0 chr13 37428494 37428567 -82316331 + L1ME2 LINE L1 5821 5894 -280 474 261 0 65 chr13 37428656 37428794 -82316104 + L1ME2 LINE L1 5920 6048 -116 1008 172 20 0 chr13 37428807 37429010 -82315888 - L1MA8 LINE L1 -4 6287 6081 3095 170 37 35 chr13 37430122 37430401 -82314497 + L1MA8 LINE L1 5621 5898 -393 1879 186 37 127 chr13 37430401 37431073 -82313825 + LTR9 LTR ERV1 1 612 0 3095 170 37 35 chr13 37431073 37431441 -82313457 + L1MA8 LINE L1 5898 6269 -22 212 279 66 0 chr13 37431771 37431832 -82313066 - L2 LINE L2 0 3313 3249 256 111 95 48 chr13 37432580 37432643 -82312255 - MLT1J LTR MaLR -33 478 413 225 228 277 0 chr13 37432673 37432774 -82312124 - MLT1J LTR MaLR -380 131 3 1036 187 34 1 chr13 37433359 37433576 -82311322 + L1M3 LINE L1 5564 5791 -392 765 149 0 0 chr13 37433804 37433918 -82310980 + AluJo/FLAM SINE Alu 1 114 -198 710 200 40 0 chr13 37433912 37434062 -82310836 + AluSg/x SINE Alu 155 310 0 * 285 301 148 53 chr13 37435669 37435878 -82309020 + MIR SINE MIR 33 261 -1 23 0 0 0 chr13 37435882 37435905 -82308993 + AT_rich Low_complexity Low_complexity 1 23 0 467 342 54 19 chr13 37436334 37436594 -82308304 + L2 LINE L2 1733 2001 -1313 698 217 92 0 chr13 37436638 37436790 -82308108 + MER63A DNA MER1_type 1 166 -44 376 233 89 11 chr13 37436805 37436985 -82307913 + Zaphod DNA AcHobo 648 841 -3190 423 0 0 0 chr13 37437013 37437060 -82307838 + (TA)n Simple_repeat Simple_repeat 2 48 0 1860 159 0 23 chr13 37437060 37437361 -82307537 - AluSx SINE Alu -18 294 1 1571 197 60 26 chr13 37437488 37437579 -82307319 + Zaphod DNA AcHobo 3595 3681 -350 2397 72 0 0 chr13 37437579 37437870 -82307028 + AluSg SINE Alu 1 291 -19 1571 197 60 26 chr13 37437870 37438195 -82306703 + Zaphod DNA AcHobo 3681 4025 -6 408 351 81 11 chr13 37439470 37439755 -82305143 + L2 LINE L2 3005 3309 -4 327 238 12 12 chr13 37440440 37440520 -82304378 + L2 LINE L2 3186 3265 -7 2903 118 7 2 chr13 37441719 37442151 -82302747 + MER57B LTR ERV1 1 434 0 34 42 0 0 chr13 37443174 37443222 -82301676 + AT_rich Low_complexity Low_complexity 1 48 0 2226 276 151 28 chr13 37443856 37444581 -82300317 + HAL1 LINE L1 43 677 -1830 198 0 0 0 chr13 37444581 37444603 -82300295 + (CA)n Simple_repeat Simple_repeat 1 22 0 2226 276 151 28 chr13 37444603 37445324 -82299574 + HAL1 LINE L1 677 1668 -839 358 261 121 20 chr13 37445332 37445531 -82299367 + HAL1 LINE L1 2289 2507 0 475 252 8 8 chr13 37446301 37446420 -82298478 - MIR SINE MIR -24 238 120 2347 92 0 13 chr13 37446432 37446748 -82298150 - AluSx SINE Alu 0 312 1 841 201 98 0 chr13 37447559 37447743 -82297155 - MER3 DNA MER1_type 0 209 8 1805 152 51 0 chr13 37448011 37448287 -82296611 + AluSx SINE Alu 2 291 -21 1480 126 78 51 chr13 37448411 37448431 -82296467 - AluSq SINE Alu -12 301 283 262 43 64 0 chr13 37448431 37448478 -82296420 + T-rich Low_complexity Low_complexity 2 180 0 1480 126 78 51 chr13 37448478 37448750 -82296148 - AluSq SINE Alu -30 283 1 2442 58 0 3 chr13 37448796 37449091 -82295807 + AluY SINE Alu 1 294 -17 185 375 18 0 chr13 37449730 37449786 -82295112 - L2 LINE L2 -90 3182 3126 295 253 115 11 chr13 37449885 37449972 -82294926 - L2 LINE L2 0 3313 3218 2339 96 7 0 chr13 37450251 37450554 -82294344 + AluY SINE Alu 6 310 -1 227 362 70 76 chr13 37451011 37451340 -82293558 - L2 LINE L2 0 3272 2946 23 33 0 0 chr13 37451401 37451431 -82293467 + AT_rich Low_complexity Low_complexity 1 30 0 341 309 33 0 chr13 37451866 37452018 -82292880 - L1ME1 LINE L1 -3 6163 6007 1502 210 10 10 chr13 37452356 37452661 -82292237 + AluJb SINE Alu 1 305 -7 345 24 0 0 chr13 37452795 37452837 -82292061 + (TG)n Simple_repeat Simple_repeat 2 43 0 1259 209 25 76 chr13 37453922 37454339 -82290559 + MLT2C1 LTR ERVL 1 662 -1 23 54 0 0 chr13 37454524 37454561 -82290337 + AT_rich Low_complexity Low_complexity 1 37 0 219 224 0 59 chr13 37455334 37455419 -82289479 + A-rich Low_complexity Low_complexity 4 83 0 29 47 0 0 chr13 37456781 37456824 -82288074 + AT_rich Low_complexity Low_complexity 1 43 0 466 337 10 45 chr13 37456853 37457055 -82287843 - MIR SINE MIR -66 196 2 3500 202 126 5 chr13 37457320 37458299 -82286599 - Charlie1a DNA MER1_type 0 1455 359 1150 234 70 32 chr13 37458318 37458634 -82286264 - Charlie1a DNA MER1_type -1126 329 2 537 125 0 11 chr13 37459928 37460038 -82284860 + AluY SINE Alu 213 311 0 1997 84 23 0 chr13 37460653 37460916 -82283982 + AluSc SINE Alu 26 294 -15 4132 207 34 13 chr13 37461594 37462498 -82282400 + MER49 LTR ERV1 1 923 0 267 366 94 14 chr13 37463229 37463442 -82281456 + L2 LINE L2 2139 2368 -946 201 74 0 0 chr13 37463477 37463504 -82281394 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1556 179 3 34 chr13 37463522 37463813 -82281085 - AluJb SINE Alu -30 282 1 342 194 0 0 chr13 37463908 37463980 -82280918 - MER116 DNA Mariner 0 80 9 29 28 0 0 chr13 37466172 37466208 -82278690 + AT_rich Low_complexity Low_complexity 1 36 0 246 105 0 0 chr13 37466874 37466912 -82277986 + (CA)n Simple_repeat Simple_repeat 1 38 0 441 110 0 0 chr13 37467564 37467637 -82277261 + (TA)n Simple_repeat Simple_repeat 1 73 0 22 0 0 0 chr13 37468024 37468046 -82276852 + AT_rich Low_complexity Low_complexity 1 22 0 265 263 62 0 chr13 37468686 37468766 -82276132 - L2 LINE L2 0 3272 3188 284 309 27 34 chr13 37469545 37469694 -82275204 - L2 LINE L2 -1 3312 3165 315 0 0 0 chr13 37470584 37470619 -82274279 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 198 250 103 15 chr13 37471038 37471106 -82273792 - MIR SINE MIR -63 145 72 216 0 0 0 chr13 37471133 37471157 -82273741 + (A)n Simple_repeat Simple_repeat 1 24 0 2304 96 0 0 chr13 37471896 37472189 -82272709 - AluSc SINE Alu -16 293 1 1785 145 151 3 chr13 37472463 37472780 -82272118 + THE1B LTR MaLR 1 364 0 4762 116 59 0 chr13 37472780 37473538 -82271360 + THE1B-int LTR MaLR 1 803 -777 2664 183 2 48 chr13 37473530 37473790 -82271108 + L1MA7 LINE L1 5523 5794 -497 * 231 36 0 0 chr13 37473790 37473818 -82271080 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 2664 183 2 48 chr13 37473818 37473834 -82271064 + L1MA7 LINE L1 5794 5809 -482 378 0 0 0 chr13 37473834 37473876 -82271022 + (GA)n Simple_repeat Simple_repeat 1 42 0 2664 183 2 48 chr13 37473876 37474200 -82270698 + L1MA7 LINE L1 5809 6096 -195 1101 120 0 0 chr13 37474227 37474404 -82270494 - AluSg/x SINE Alu 0 308 132 701 133 107 0 chr13 37474471 37474621 -82270277 + L1MA9 LINE L1 6141 6306 -6 304 340 109 32 chr13 37475341 37475497 -82269401 + L2 LINE L2 3101 3268 -4 266 315 11 0 chr13 37475500 37475589 -82269309 + (TGGA)n Simple_repeat Simple_repeat 1 90 0 846 225 29 10 chr13 37475993 37476202 -82268696 - LTR16A1 LTR ERVL 0 457 245 337 289 88 0 chr13 37476285 37476399 -82268499 - LTR16A1 LTR ERVL -333 124 1 969 222 19 5 chr13 37476410 37476626 -82268272 - MER20 DNA MER1_type 0 219 1 252 296 0 0 chr13 37477579 37477633 -82267265 - L2 LINE L2 -3 3269 3216 21 36 0 0 chr13 37478476 37478504 -82266394 + AT_rich Low_complexity Low_complexity 1 28 0 2670 179 16 2 chr13 37479377 37479868 -82265030 + ERVL-B1 LTR ERVL 929 1426 -4338 * 4404 174 63 30 chr13 37479860 37480828 -82264070 + ERVL-B1 LTR ERVL 4758 5757 -7 1224 206 7 58 chr13 37480828 37481138 -82263760 + MLT2B1 LTR ERVL 1 294 -226 268 136 0 10 chr13 37481150 37481166 -82263732 + MLT2B3 LTR ERVL 459 474 -80 503 16 16 0 chr13 37481166 37481230 -82263668 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 268 136 0 10 chr13 37481230 37481272 -82263626 + MLT2B3 LTR ERVL 474 554 0 22 35 0 0 chr13 37481340 37481369 -82263529 + AT_rich Low_complexity Low_complexity 1 29 0 264 219 27 27 chr13 37481589 37481662 -82263236 - MIR SINE MIR -120 142 70 1430 81 0 0 chr13 37481775 37481949 -82262949 - AluSq SINE Alu -6 307 134 1922 143 24 8 chr13 37482480 37482824 -82262074 - MER7A DNA MER2_type -1 345 2 276 30 0 0 chr13 37483076 37483109 -82261789 + (TA)n Simple_repeat Simple_repeat 2 34 0 2143 103 0 10 chr13 37483110 37483402 -82261496 - AluSq SINE Alu -24 289 1 357 326 47 17 chr13 37483421 37483593 -82261305 - L1ME LINE L1 -343 5778 5602 195 338 73 0 chr13 37484371 37484439 -82260459 + MIR SINE MIR 3 75 -187 750 337 95 8 chr13 37484442 37484810 -82260088 + L3 LINE CR1 1084 1483 -94 2312 97 0 0 chr13 37486046 37486336 -82258562 + AluSc SINE Alu 1 290 -19 206 261 15 15 chr13 37486459 37486524 -82258374 + MIR SINE MIR 78 142 -120 373 248 91 16 chr13 37486999 37487120 -82257778 + LTR67 LTR ERVL 426 555 -2 204 270 79 0 chr13 37487574 37487637 -82257261 + MIR3 SINE MIR 104 171 -37 26 30 0 0 chr13 37488687 37488720 -82256178 + AT_rich Low_complexity Low_complexity 1 33 0 239 316 26 13 chr13 37488786 37488862 -82256036 - MIR3 SINE MIR -123 85 9 26 30 0 0 chr13 37488997 37489030 -82255868 + AT_rich Low_complexity Low_complexity 1 33 0 316 388 39 11 chr13 37489282 37489460 -82255438 - MIR3 SINE MIR -19 189 7 198 0 0 0 chr13 37490108 37490130 -82254768 + (A)n Simple_repeat Simple_repeat 1 22 0 28 29 0 0 chr13 37490920 37490955 -82253943 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr13 37493163 37493184 -82251714 + (CTG)n Simple_repeat Simple_repeat 2 22 0 25 31 0 0 chr13 37501031 37501063 -82243835 + AT_rich Low_complexity Low_complexity 1 32 0 525 168 131 9 chr13 37501758 37501865 -82243033 + FLAM_C SINE Alu 1 120 -23 2067 128 28 0 chr13 37502543 37502832 -82242066 - AluSx SINE Alu -15 297 1 460 374 52 0 chr13 37503776 37503950 -82240948 + MER91A DNA MER1_type 2 184 -12 282 190 51 63 chr13 37506351 37506430 -82238468 - MIR SINE MIR -108 154 77 693 166 0 22 chr13 37506716 37506855 -82238043 - L1PA13 LINE L1 -1 6162 6027 749 343 115 32 chr13 37509931 37510421 -82234477 - L2 LINE L2 -6 3266 2818 1700 139 72 31 chr13 37510421 37510780 -82234118 - THE1C LTR MaLR 0 375 2 749 343 115 32 chr13 37510780 37511163 -82233735 - L2 LINE L2 -454 2818 2321 596 255 34 68 chr13 37511220 37511455 -82233443 + MIR SINE MIR 10 236 -26 226 194 30 0 chr13 37511526 37511593 -82233305 + CT-rich Low_complexity Low_complexity 4 72 0 260 289 0 0 chr13 37513796 37513872 -82231026 + MIR SINE MIR 184 259 -3 444 227 101 25 chr13 37513874 37513993 -82230905 + L2 LINE L2 3185 3312 -1 2203 116 0 0 chr13 37514106 37514400 -82230498 + AluSx SINE Alu 3 296 -16 2055 131 0 0 chr13 37514488 37514792 -82230106 - AluSq SINE Alu 0 304 1 22 35 0 0 chr13 37515099 37515128 -82229770 + AT_rich Low_complexity Low_complexity 1 29 0 238 242 16 0 chr13 37515146 37515208 -82229690 + (TA)n Simple_repeat Simple_repeat 1 63 0 26 0 0 0 chr13 37515239 37515265 -82229633 + AT_rich Low_complexity Low_complexity 1 26 0 1722 141 36 16 chr13 37515594 37515719 -82229179 + AluSx SINE Alu 1 122 -190 459 0 0 0 chr13 37515719 37515770 -82229128 + (CA)n Simple_repeat Simple_repeat 2 52 0 1722 141 36 16 chr13 37515770 37515950 -82228948 + AluSx SINE Alu 122 312 0 193 301 72 0 chr13 37516353 37516436 -82228462 + L2 LINE L2 3221 3309 -4 1961 84 92 3 chr13 37517642 37517926 -82226972 - AluSg SINE Alu -1 309 1 300 158 0 0 chr13 37518326 37518383 -82226515 + CT-rich Low_complexity Low_complexity 2 58 0 378 74 0 0 chr13 37518383 37518437 -82226461 + (CA)n Simple_repeat Simple_repeat 1 54 0 440 289 30 48 chr13 37518952 37519118 -82225780 + MIR SINE MIR 28 190 -72 777 223 57 33 chr13 37519543 37519754 -82225144 + MER20 DNA MER1_type 1 216 -3 201 297 81 54 chr13 37519828 37519939 -82224959 + L2 LINE L2 3199 3312 -1 955 194 65 27 chr13 37520179 37520522 -82224376 + L1MA8 LINE L1 5982 6290 -1 2028 106 3 27 chr13 37520535 37520853 -82224045 + AluSq SINE Alu 1 311 0 21 36 0 0 chr13 37521617 37521645 -82223253 + AT_rich Low_complexity Low_complexity 1 28 0 1986 140 17 0 chr13 37522240 37522540 -82222358 - AluSx SINE Alu -7 305 1 439 296 62 12 chr13 37522718 37522880 -82222018 + L3 LINE CR1 1318 1487 -90 2200 116 0 0 chr13 37523145 37523439 -82221459 - AluSx SINE Alu -8 304 11 231 333 157 0 chr13 37524543 37524696 -82220202 - MIR SINE MIR -1 261 85 2138 191 21 50 chr13 37524698 37524964 -82219934 - MLT1D LTR MaLR -2 503 258 2190 107 0 0 chr13 37524964 37525253 -82219645 - AluSq SINE Alu -24 289 1 2138 191 21 50 chr13 37525253 37525504 -82219394 - MLT1D LTR MaLR -247 258 1 1242 61 12 0 chr13 37526743 37526907 -82217991 + L1PA10 LINE L1 6001 6166 -2 245 225 102 176 chr13 37527647 37527760 -82217138 + MER5B DNA MER1_type 6 101 -77 1296 133 45 166 chr13 37527760 37528092 -82216806 - AluJo SINE Alu -10 292 1 245 225 102 176 chr13 37528092 37528165 -82216733 + MER5B DNA MER1_type 101 178 0 645 181 194 12 chr13 37528261 37528421 -82216477 - MER5A DNA MER1_type 0 189 1 2114 125 3 13 chr13 37528681 37528993 -82215905 + AluSx SINE Alu 1 309 -3 586 206 121 0 chr13 37529373 37529514 -82215384 + MER105 DNA DNA 5 162 -42 739 241 60 19 chr13 37529525 37529741 -82215157 - MIR SINE MIR -36 226 2 241 353 0 0 chr13 37530071 37530156 -82214742 - MIR SINE MIR -131 131 47 452 364 57 53 chr13 37530911 37531386 -82213512 - L2 LINE L2 0 3313 2837 2564 205 16 23 chr13 37531686 37532248 -82212650 - MER74A LTR ERVL 0 558 1 1308 120 22 0 chr13 37533029 37533241 -82211657 + AluSg/x SINE Alu 95 310 0 373 289 67 0 chr13 37533305 37533409 -82211489 + L2 LINE L2 3200 3310 -3 1556 182 7 27 chr13 37534148 37534445 -82210453 - AluJb SINE Alu -21 291 1 272 170 259 82 chr13 37534511 37534560 -82210338 - MER103 DNA DNA 0 166 127 2008 74 4 0 chr13 37534560 37534828 -82210070 - AluSp SINE Alu 0 308 40 272 170 259 82 chr13 37534828 37534912 -82209986 - MER103 DNA DNA -39 127 8 233 264 66 75 chr13 37537204 37537310 -82207588 + MER94 DNA DNA 4 108 -26 298 282 103 0 chr13 37539159 37539276 -82205622 + MER112 DNA MER1_type 98 226 -34 679 198 0 0 chr13 37539396 37539540 -82205358 - FLAM_C SINE Alu 0 144 1 200 163 0 20 chr13 37539899 37539948 -82204950 + A-rich Low_complexity Low_complexity 2 49 0 1418 171 54 54 chr13 37540215 37540471 -82204427 - Charlie1 DNA MER1_type 0 2761 2503 2289 108 0 3 chr13 37540471 37540778 -82204120 - AluSg SINE Alu -4 306 1 1418 171 54 54 chr13 37540778 37540913 -82203985 - Charlie1 DNA MER1_type -257 2504 2370 195 204 0 0 chr13 37542596 37542645 -82202253 + T-rich Low_complexity Low_complexity 1 49 0 477 339 99 66 chr13 37543468 37544016 -82200882 - L2 LINE L2 -434 2880 2294 2249 110 3 3 chr13 37544016 37544324 -82200574 + AluSx SINE Alu 1 308 -4 477 339 99 66 chr13 37544324 37544604 -82200294 - L2 LINE L2 -1020 2294 2025 607 320 30 17 chr13 37544609 37544843 -82200055 + MIR SINE MIR 17 253 -9 203 156 0 0 chr13 37544893 37544925 -82199973 + (CAT)n Simple_repeat Simple_repeat 2 33 0 225 343 145 14 chr13 37544973 37545180 -82199718 - L2 LINE L2 -1344 1970 1737 445 196 203 8 chr13 37546763 37546896 -82198002 - MIR SINE MIR -54 208 50 455 332 15 19 chr13 37548171 37548430 -82196468 - HAL1 LINE L1 -2203 304 47 222 180 0 0 chr13 37549017 37549078 -82195820 + (TA)n Simple_repeat Simple_repeat 1 61 0 189 274 264 19 chr13 37549515 37549621 -82195277 + L2 LINE L2 3141 3272 0 1251 161 32 0 chr13 37549936 37550153 -82194745 - AluJo SINE Alu -5 307 84 195 0 39 0 chr13 37550212 37550238 -82194660 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2272 84 0 3 chr13 37550238 37550524 -82194374 - AluSq SINE Alu -1 310 1 27 73 0 0 chr13 37550942 37550997 -82193901 + AT_rich Low_complexity Low_complexity 1 55 0 297 0 0 0 chr13 37553128 37553161 -82191737 + (TG)n Simple_repeat Simple_repeat 2 34 0 243 61 0 0 chr13 37553222 37553255 -82191643 + (CA)n Simple_repeat Simple_repeat 2 34 0 361 306 25 12 chr13 37554300 37554460 -82190438 - MER103 DNA DNA -1 165 4 812 143 15 170 chr13 37555253 37555512 -82189386 - MER20 DNA MER1_type 0 219 1 1212 96 28 11 chr13 37555902 37556079 -82188819 + THE1B LTR MaLR 1 180 -184 2199 148 42 10 chr13 37556083 37556424 -82188474 - L1MA4 LINE L1 -369 5931 5575 1836 131 4 15 chr13 37556424 37556698 -82188200 - AluSx SINE Alu -10 302 32 2199 148 42 10 chr13 37556698 37556742 -82188156 - L1MA4 LINE L1 -725 5575 5534 1670 185 3 10 chr13 37556744 37557065 -82187833 - L1MC/D LINE L1 -459 5783 5474 297 0 0 0 chr13 37557597 37557630 -82187268 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 354 0 0 chr13 37557880 37557962 -82186936 + CT-rich Low_complexity Low_complexity 5 86 0 24 53 0 0 chr13 37558131 37558169 -82186729 + AT_rich Low_complexity Low_complexity 1 38 0 29 90 0 0 chr13 37558875 37558953 -82185945 + AT_rich Low_complexity Low_complexity 1 78 0 299 0 73 0 chr13 37559689 37559730 -82185168 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 405 0 0 0 chr13 37560591 37560636 -82184262 + (ATG)n Simple_repeat Simple_repeat 2 46 0 2215 104 0 0 chr13 37560653 37560933 -82183965 - AluSg SINE Alu -30 280 1 2590 188 104 38 chr13 37561923 37562257 -82182641 + MER82 DNA MER2_type 1 312 -341 2162 104 0 41 chr13 37562257 37562573 -82182325 - AluSx SINE Alu -9 303 1 2590 188 104 38 chr13 37562573 37562845 -82182053 + MER82 DNA MER2_type 312 647 -6 2026 126 24 0 chr13 37563324 37563618 -82181280 - AluSx SINE Alu -9 303 3 853 215 0 0 chr13 37564619 37564782 -82180116 + FRAM SINE Alu 1 163 -3 28 0 0 0 chr13 37567216 37567244 -82177654 + AT_rich Low_complexity Low_complexity 1 28 0 297 290 56 48 chr13 37567817 37568052 -82176846 - MIR3 SINE MIR -12 250 15 2260 87 17 0 chr13 37568178 37568467 -82176431 - AluSp SINE Alu -19 294 1 358 374 69 24 chr13 37568762 37569094 -82175804 - L1ME LINE L1 -449 5672 5326 22 56 0 0 chr13 37570188 37570224 -82174674 + AT_rich Low_complexity Low_complexity 1 36 0 2480 67 0 0 chr13 37570644 37570942 -82173956 - AluY SINE Alu -13 298 1 264 292 0 15 chr13 37572590 37572655 -82172243 - L2 LINE L2 0 3313 3250 312 246 200 9 chr13 37572751 37572861 -82172037 - MIR SINE MIR -130 132 2 215 336 28 9 chr13 37572880 37572987 -82171911 - MIR SINE MIR -148 114 6 514 254 8 8 chr13 37573735 37573853 -82171045 + L2 LINE L2 3196 3313 0 192 97 0 0 chr13 37573994 37574025 -82170873 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1717 154 29 4 chr13 37574029 37574309 -82170589 - AluJb SINE Alu -25 287 1 204 82 41 20 chr13 37575732 37575781 -82169117 + (TA)n Simple_repeat Simple_repeat 1 50 0 195 194 32 0 chr13 37575869 37575962 -82168936 + (TA)n Simple_repeat Simple_repeat 1 96 0 753 172 0 0 chr13 37575968 37576090 -82168808 - FLAM_C SINE Alu -21 122 1 189 107 0 0 chr13 37576591 37576619 -82168279 + (A)n Simple_repeat Simple_repeat 1 28 0 188 243 108 14 chr13 37677194 37677268 -82067630 - MIR SINE MIR -109 153 73 701 322 90 52 chr13 37677682 37678719 -82066179 + L2 LINE L2 2175 3272 0 28 29 0 0 chr13 37678733 37678768 -82066130 + AT_rich Low_complexity Low_complexity 1 35 0 1383 153 133 7 chr13 37679118 37679418 -82065480 - MER44D DNA MER2_type -1 608 1 2252 93 3 7 chr13 37679477 37679766 -82065132 - AluSx SINE Alu -24 288 1 371 282 200 12 chr13 37680234 37680404 -82064494 + MIR SINE MIR 32 233 -29 2011 125 0 29 chr13 37681253 37681565 -82063333 - AluSx SINE Alu -9 303 1 2483 73 0 10 chr13 37681578 37681891 -82063007 - AluSg SINE Alu 0 310 1 2481 60 7 0 chr13 37681891 37682191 -82062707 - AluSq SINE Alu -11 302 1 300 332 183 30 chr13 37684622 37684923 -82059975 + L2 LINE L2 2925 3271 -1 281 352 23 8 chr13 37685192 37685320 -82059578 + MER5B DNA MER1_type 1 130 -48 467 179 32 21 chr13 37685327 37685422 -82059476 - L1MC1 LINE L1 -9 6324 6229 526 307 56 42 chr13 37685518 37685733 -82059165 - MIR SINE MIR -34 228 11 25 31 0 0 chr13 37686090 37686122 -82058776 + AT_rich Low_complexity Low_complexity 1 32 0 522 315 90 2 chr13 37686398 37686811 -82058087 + L1M4 LINE L1 3719 4167 -1979 228 85 38 66 chr13 37687695 37687801 -82057097 + (TAAA)n Simple_repeat Simple_repeat 1 103 0 320 250 0 0 chr13 37688353 37688433 -82056465 - Tigger2a DNA MER2_type -354 80 1 607 283 124 13 chr13 37689767 37689993 -82054905 - MIR SINE MIR 0 262 12 292 148 19 0 chr13 37690620 37690674 -82054224 + MER116 DNA Mariner 1 55 -25 1631 165 77 9 chr13 37691273 37691613 -82053285 - MLT2C1 LTR ERVL 0 397 35 692 258 50 0 chr13 37691632 37691814 -82053084 - MIR SINE MIR -59 203 13 6015 166 10 33 chr13 37693109 37694221 -82050677 + L1PA15-16 LINE L1 1 1086 -5763 1975 197 29 30 chr13 37694234 37694957 -82049941 + L1PA15-16 LINE L1 2721 3447 -3402 2856 161 25 20 chr13 37696408 37697333 -82047565 + L1M2 LINE L1 4808 5727 -573 12558 145 19 59 chr13 37697437 37699596 -82045302 + L1PA12 LINE L1 482 3739 -3845 237 33 0 0 chr13 37699596 37699626 -82045272 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 12558 145 19 59 chr13 37699626 37700176 -82044722 + L1PA12 LINE L1 3739 4310 -3274 34 0 0 0 chr13 37700311 37700345 -82044553 + AT_rich Low_complexity Low_complexity 1 34 0 2374 78 0 3 chr13 37701618 37701939 -82042959 + L1PB1 LINE L1 5832 6151 0 295 319 7 14 chr13 37701960 37702101 -82042797 - MER112 DNA MER1_type -104 156 17 190 278 33 56 chr13 37703544 37703634 -82041264 + MIR SINE MIR 47 134 -128 272 329 65 26 chr13 37704916 37705147 -82039751 - MIR SINE MIR 0 262 23 22 35 0 0 chr13 37705406 37705435 -82039463 + AT_rich Low_complexity Low_complexity 1 29 0 319 322 153 6 chr13 37705620 37705803 -82039095 - MIR SINE MIR -6 256 47 183 219 98 0 chr13 37705880 37705921 -82038977 + L2 LINE L2 3267 3311 -2 397 179 84 0 chr13 37707507 37707602 -82037296 - L1MA9 LINE L1 -37 6275 6173 608 308 70 12 chr13 37708161 37708489 -82036409 + MER41E LTR ERV1 166 512 0 195 42 0 0 chr13 37708509 37708533 -82036365 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 2129 114 3 10 chr13 37708533 37708823 -82036075 - AluSp SINE Alu -25 288 1 2276 110 0 0 chr13 37709349 37709648 -82035250 + AluSq SINE Alu 1 299 -14 26 30 0 0 chr13 37711511 37711544 -82033354 + AT_rich Low_complexity Low_complexity 1 33 0 272 308 208 23 chr13 37712061 37712282 -82032616 + L2 LINE L2 2829 3090 -182 520 233 70 0 chr13 37712810 37712982 -82031916 - L1MC4 LINE L1 -389 7653 7470 399 151 0 0 chr13 37712993 37713066 -82031832 - L1PA16 LINE L1 -22 6144 6072 274 262 0 48 chr13 37713067 37713170 -82031728 - L1MC4 LINE L1 -558 7484 7387 315 123 0 18 chr13 37713171 37713228 -82031670 - L1MC4a LINE L1 -590 7218 7163 270 182 68 45 chr13 37713212 37713300 -82031598 - L1MC4 LINE L1 -937 7105 7016 * 3609 137 42 14 chr13 37713354 37713480 -82031418 - Tigger2 DNA MER2_type -2033 685 564 2086 123 0 3 chr13 37713480 37713794 -82031104 + AluSq SINE Alu 1 313 0 3609 137 42 14 chr13 37713794 37714331 -82030567 - Tigger2 DNA MER2_type -2154 564 2 266 216 68 45 chr13 37714331 37714385 -82030513 - L1MC4 LINE L1 -1506 6536 6478 4264 154 61 12 chr13 37714385 37715209 -82029689 - MER6 DNA MER2_type -1 864 1 266 216 68 45 chr13 37715209 37715242 -82029656 - L1MC4 LINE L1 -1564 6478 6447 303 248 165 8 chr13 37715681 37715802 -82029096 - L1M4 LINE L1 -1489 4657 4518 411 231 121 40 chr13 37715848 37716195 -82028703 - L1M4 LINE L1 -1695 4451 4077 1430 226 57 65 chr13 37716277 37716782 -82028116 - MLT1E1 LTR MaLR 0 654 154 305 260 10 0 chr13 37716876 37716976 -82027922 - L1M4 LINE L1 -2154 3992 3892 839 168 0 0 chr13 37716988 37717119 -82027779 - AluJb SINE Alu -16 296 166 2056 174 30 123 chr13 37717127 37717786 -82027112 - LTR9 LTR ERV1 -14 598 1 487 128 90 0 chr13 37717786 37717864 -82027034 - AluJb SINE Alu -143 169 85 22 0 0 0 chr13 37718148 37718170 -82026728 + AT_rich Low_complexity Low_complexity 1 22 0 267 152 80 24 chr13 37718185 37718310 -82026588 + (TA)n Simple_repeat Simple_repeat 1 132 0 319 265 110 40 chr13 37718313 37718513 -82026385 - L1MEc LINE L1 -4708 2117 1904 2519 47 0 0 chr13 37718566 37718866 -82026032 - AluY SINE Alu -11 300 1 325 242 78 33 chr13 37718923 37719076 -82025822 - L1MEc LINE L1 -5018 1616 1457 737 169 16 0 chr13 37719276 37719400 -82025498 - AluJb SINE Alu -186 126 1 1254 228 94 32 chr13 37720750 37721123 -82023775 - MSTD LTR MaLR 0 396 1 879 193 113 0 chr13 37721123 37721336 -82023562 - MSTD-int LTR MaLR 0 1735 1499 1577 199 48 3 chr13 37721481 37721772 -82023126 + AluSx SINE Alu 1 304 -8 28 0 0 0 chr13 37721965 37721993 -82022905 + AT_rich Low_complexity Low_complexity 1 28 0 201 312 32 32 chr13 37723806 37723899 -82020999 + MIR3 SINE MIR 4 96 -112 310 329 12 59 chr13 37723961 37724131 -82020767 - L2 LINE L2 -2 3311 3150 1564 143 8 0 chr13 37724137 37724402 -82020496 + Tigger3b DNA MER2_type 139 405 -826 1047 155 0 0 chr13 37724402 37724595 -82020303 + L1 LINE L1 5043 5235 -911 237 68 23 0 chr13 37724595 37724639 -82020259 + Tigger3(Golem) DNA MER2_type 279 323 -2706 1171 197 79 78 chr13 37724744 37725429 -82019469 - LTR1B LTR ERV1 -81 745 2 3168 127 231 11 chr13 37725458 37726180 -82018718 + Tigger3(Golem) DNA MER2_type 2148 3028 -1 378 314 36 23 chr13 37726184 37726404 -82018494 - L2 LINE L2 -1041 2273 2051 2521 196 144 43 chr13 37727956 37728706 -82016192 - LTR1B LTR ERV1 0 826 1 2801 138 15 4 chr13 37728819 37729275 -82015623 + MER4C LTR ERV1 1 461 -4 2511 252 63 49 chr13 37730372 37731327 -82013571 - L1MEc LINE L1 -5573 969 2 3344 94 12 2 chr13 37732123 37732604 -82012294 - LTR19A LTR ERV1 0 486 1 218 254 68 0 chr13 37732605 37732664 -82012234 + MIR SINE MIR 159 221 -41 202 350 0 0 chr13 37733632 37733692 -82011206 + MER91A DNA MER1_type 19 78 -118 262 312 0 0 chr13 37733702 37733779 -82011119 - MER63 DNA MER1_type -1 1060 984 2283 196 69 12 chr13 37733967 37734472 -82010426 + MER74A LTR ERVL 25 558 0 739 196 20 0 chr13 37734691 37734844 -82010054 + MER74A LTR ERVL 224 379 -179 2269 93 0 7 chr13 37735994 37736283 -82008615 + AluSp SINE Alu 9 295 -18 279 203 0 0 chr13 37736299 37736358 -82008540 + (TATG)n Simple_repeat Simple_repeat 2 60 0 550 323 0 12 chr13 37742629 37742796 -82002102 - MIR3 SINE MIR -11 197 33 21 36 0 0 chr13 37743433 37743461 -82001437 + AT_rich Low_complexity Low_complexity 1 28 0 414 346 27 11 chr13 37743500 37743685 -82001213 - MIR SINE MIR 0 262 75 1618 173 45 14 chr13 37744000 37744289 -82000609 - AluJo SINE Alu -14 298 1 316 330 0 29 chr13 37745037 37745140 -81999758 - L2 LINE L2 -25 3247 3148 328 277 69 5 chr13 37746802 37746936 -81997962 - MIR SINE MIR -51 157 2 434 305 106 0 chr13 37749189 37749330 -81995568 - MIR3 SINE MIR -7 201 46 2329 175 37 2 chr13 37750227 37750684 -81994214 - L1MB8 LINE L1 -9 6169 5697 268 257 0 40 chr13 37753193 37753267 -81991631 + L2 LINE L2 3243 3313 0 505 275 163 0 chr13 37754223 37754383 -81990515 + MIR SINE MIR 75 260 -2 2463 149 112 78 chr13 37754653 37755189 -81989709 + MLT2B3 LTR ERVL 1 554 0 1436 42 6 0 chr13 37756001 37756167 -81988731 - AluSp SINE Alu -12 301 135 183 42 0 0 chr13 37756167 37756191 -81988707 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 2084 88 3 18 chr13 37756191 37756474 -81988424 - AluSx SINE Alu -32 280 2 296 287 79 30 chr13 37756811 37756912 -81987986 - MIR SINE MIR -155 107 2 204 228 18 97 chr13 37757550 37757664 -81987234 + GA-rich Low_complexity Low_complexity 1 105 0 2189 108 13 22 chr13 37758558 37758873 -81986025 + AluSq SINE Alu 1 312 -1 1701 202 98 7 chr13 37758885 37759336 -81985562 + Charlie1b DNA MER1_type 27 518 -5 2318 103 0 0 chr13 37759337 37759629 -81985269 + AluSx SINE Alu 1 292 -20 527 250 85 0 chr13 37759681 37759845 -81985053 - MER58B DNA MER1_type -11 330 153 252 86 0 0 chr13 37760443 37760478 -81984420 + (A)n Simple_repeat Simple_repeat 1 35 0 189 263 35 0 chr13 37761028 37761085 -81983813 + L2 LINE L2 3186 3244 -28 24 53 0 0 chr13 37762229 37762267 -81982631 + AT_rich Low_complexity Low_complexity 1 38 0 254 276 207 0 chr13 37762944 37763031 -81981867 + MIR SINE MIR 9 113 -149 3007 215 18 8 chr13 37763289 37763945 -81980953 - L1 LINE L1 -2096 4050 3388 1894 161 92 34 chr13 37763945 37764325 -81980573 + MSTB1 LTR MaLR 1 402 -30 822 194 117 4 chr13 37764334 37764582 -81980316 - L1 LINE L1 -2758 3388 3113 450 218 61 0 chr13 37764581 37764728 -81980170 + L1M1 LINE L1 2419 2574 -4992 * 467 217 17 25 chr13 37764727 37764847 -81980051 + L1 LINE L1 15 133 -7432 * 3351 204 104 3 chr13 37764846 37765813 -81979085 + L1 LINE L1 1107 2219 -5346 10932 194 29 14 chr13 37765990 37768470 -81976428 + L1 LINE L1 3881 6397 -1168 1748 154 3 3 chr13 37768626 37768912 -81975986 + Tigger1 DNA MER2_type 1307 1592 -826 743 129 0 91 chr13 37768913 37769045 -81975853 + FLAM_C SINE Alu 2 121 -22 180 0 0 0 chr13 37769045 37769065 -81975833 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 366 23 0 0 chr13 37769066 37769109 -81975789 + (TA)n Simple_repeat Simple_repeat 2 44 0 4424 146 71 12 chr13 37769119 37769898 -81975000 + Tigger1 DNA MER2_type 1589 2413 -5 377 164 0 0 chr13 37769905 37769966 -81974932 + L1M1 LINE L1 2907 2967 -4599 2371 104 0 0 chr13 37822155 37822462 -81922436 - AluSx SINE Alu -5 307 1 319 258 188 0 chr13 37822884 37823012 -81921886 - L1ME LINE L1 -468 5653 5502 371 258 75 19 chr13 37823551 37823764 -81921134 - L1MC4a LINE L1 -1906 5902 5678 207 250 191 15 chr13 37824738 37824806 -81920092 - L2 LINE L2 -2 3270 3191 388 156 0 0 chr13 37824809 37824873 -81920025 + LTR8A LTR ERV1 664 727 0 202 241 52 0 chr13 37825103 37825161 -81919737 - MIR3 SINE MIR -25 183 123 1392 259 27 11 chr13 37825686 37826160 -81918738 + L1ME4a LINE L1 5402 5883 -279 543 119 0 0 chr13 37826173 37826257 -81918641 + MER67D LTR ERV1 26 109 -405 22 109 0 0 chr13 37826257 37826349 -81918549 + AT_rich Low_complexity Low_complexity 1 92 0 1028 186 70 0 chr13 37826376 37826591 -81918307 + MER67C LTR ERV1 114 343 -367 1519 156 38 38 chr13 37826611 37826958 -81917940 + MER4A LTR ERV1 1 347 -317 286 167 17 17 chr13 37827078 37827138 -81917760 + MER4C LTR ERV1 296 355 -110 237 136 23 0 chr13 37827135 37827179 -81917719 + MER4A LTR ERV1 603 647 -17 * 582 249 66 6 chr13 37827229 37827410 -81917488 + MER67D LTR ERV1 319 510 -4 2138 154 30 0 chr13 37828433 37828771 -81916127 + MER7A DNA MER2_type 1 346 0 2083 122 3 29 chr13 37829147 37829459 -81915439 + AluSx SINE Alu 1 304 -8 269 207 11 23 chr13 37829809 37829896 -81915002 + L1ME4a LINE L1 5929 6014 -107 336 83 0 0 chr13 37829896 37829944 -81914954 + (T)n Simple_repeat Simple_repeat 1 48 0 1788 134 67 23 chr13 37830042 37830341 -81914557 - AluSx SINE Alu 0 312 1 448 250 45 51 chr13 37830778 37830954 -81913944 + MER5A DNA MER1_type 9 183 -6 490 275 60 40 chr13 37831065 37831247 -81913651 + MER63A DNA MER1_type 2 190 -1498 1551 144 118 11 chr13 37831247 37831517 -81913381 + AluSg SINE Alu 1 299 -11 490 275 60 40 chr13 37831517 37831534 -81913364 + MER63A DNA MER1_type 190 205 -5 22 0 0 0 chr13 37831576 37831598 -81913300 + AT_rich Low_complexity Low_complexity 1 22 0 407 131 58 22 chr13 37831658 37831795 -81913103 + (TA)n Simple_repeat Simple_repeat 2 143 0 633 94 41 18 chr13 37831797 37831968 -81912930 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 394 91 51 51 chr13 37831988 37832163 -81912735 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 408 128 35 50 chr13 37832296 37832554 -81912344 + (TTATA)n Simple_repeat Simple_repeat 1 254 0 1765 167 19 19 chr13 37832984 37833296 -81911602 - AluJb SINE Alu 0 312 1 216 80 20 40 chr13 37833397 37833447 -81911451 + (CA)n Simple_repeat Simple_repeat 1 49 0 378 268 41 8 chr13 37833466 37833589 -81911309 + MIR SINE MIR 92 218 -44 451 306 113 21 chr13 37834655 37834965 -81909933 + L2 LINE L2 2664 2944 -369 840 264 4 51 chr13 37834965 37835062 -81909836 + MER58A DNA MER1_type 1 101 -2319 1967 164 3 16 chr13 37835062 37835372 -81909526 - AluJb SINE Alu -6 306 1 840 264 4 51 chr13 37835372 37835509 -81909389 + MER58A DNA MER1_type 101 224 0 451 306 113 21 chr13 37835509 37835630 -81909268 + L2 LINE L2 2944 3313 0 190 116 47 0 chr13 37835850 37835893 -81909005 + (TTATA)n Simple_repeat Simple_repeat 2 46 0 1364 182 0 0 chr13 37836018 37836243 -81908655 + AluSg/x SINE Alu 85 309 -3 762 267 69 40 chr13 37836523 37836770 -81908128 + MIR SINE MIR 9 262 0 1909 141 6 31 chr13 37837732 37838052 -81906846 - AluSx SINE Alu 0 312 1 2310 78 10 13 chr13 37838412 37838718 -81906180 - AluSx SINE Alu -7 305 1 236 310 54 39 chr13 37838743 37838872 -81906026 + L2 LINE L2 2190 2320 -994 2426 86 0 0 chr13 37839208 37839509 -81905389 + AluSc SINE Alu 1 301 -8 276 313 74 79 chr13 37839629 37840061 -81904837 - L1ME LINE L1 -424 5746 5317 14992 144 48 14 chr13 37840113 37842756 -81902142 - Tigger4(Zombi) DNA MER2_type 0 2731 1 21 36 0 0 chr13 37842917 37842945 -81901953 + AT_rich Low_complexity Low_complexity 1 28 0 304 259 65 22 chr13 37843027 37843166 -81901732 - L1ME LINE L1 -1428 4718 4574 2364 81 0 19 chr13 37843235 37843545 -81901353 - AluY SINE Alu -7 304 1 1778 171 0 52 chr13 37843674 37844002 -81900896 + AluJb SINE Alu 1 311 -1 248 266 25 0 chr13 37844131 37844210 -81900688 - L1ME LINE L1 -1956 4190 4110 40870 30 21 6 chr13 37844316 37850374 -81894524 - L1PA2 LINE L1 -3 6152 3 407 285 80 45 chr13 37850431 37850743 -81894155 - L1ME LINE L1 -2203 3943 3621 3528 154 116 13 chr13 37850925 37851708 -81893190 + MER6 DNA MER2_type 2 865 0 2429 111 53 2 chr13 37851933 37852329 -81892569 + MER57B LTR ERV1 10 425 -9 211 322 33 25 chr13 37852721 37852842 -81892056 + L2 LINE L2 2736 2857 -457 203 349 96 12 chr13 37858555 37858638 -81886260 + L2 LINE L2 3144 3233 -39 553 313 71 5 chr13 37859739 37859950 -81884948 - MIR SINE MIR -31 231 7 318 378 0 9 chr13 37860158 37860269 -81884629 - MIR3 SINE MIR -96 112 3 396 0 0 0 chr13 37861972 37862016 -81882882 + (CA)n Simple_repeat Simple_repeat 2 45 0 267 327 45 14 chr13 37862237 37862457 -81882441 + HAL1 LINE L1 1231 1457 -1050 2239 97 6 50 chr13 37862830 37863151 -81881747 + AluSp SINE Alu 1 307 -6 24 0 0 0 chr13 37863409 37863433 -81881465 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 37863549 37863577 -81881321 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 37864211 37864243 -81880655 + AT_rich Low_complexity Low_complexity 1 32 0 365 289 22 22 chr13 37864269 37864404 -81880494 + L1ME LINE L1 5454 5588 -533 208 247 72 82 chr13 37865256 37865353 -81879545 + MER5B DNA MER1_type 64 159 -19 248 291 13 0 chr13 37865599 37865678 -81879220 - HsTC2 DNA Tc2 -1811 87 8 783 297 40 11 chr13 37867805 37868081 -81876817 + L2 LINE L2 1025 1308 -2006 1233 151 5 10 chr13 37868545 37868744 -81876154 + MER2 DNA MER2_type 13 210 -135 205 152 196 0 chr13 37868782 37868828 -81876070 + L2 LINE L2 1382 1436 -1878 1855 245 106 4 chr13 37869056 37869538 -81875360 + MLT1F LTR MaLR 1 531 -11 380 231 162 0 chr13 37869568 37869685 -81875213 + MER103 DNA DNA 12 147 -19 191 268 169 0 chr13 37870476 37870547 -81874351 - L2 LINE L2 -63 3250 3168 329 250 58 48 chr13 37870637 37870741 -81874157 + L2 LINE L2 3208 3312 -1 214 267 48 0 chr13 37870759 37870864 -81874034 + (TA)n Simple_repeat Simple_repeat 2 111 0 594 227 105 6 chr13 37870954 37871126 -81873772 - L1ME LINE L1 -390 5731 5543 21 57 0 0 chr13 37872188 37872223 -81872675 + AT_rich Low_complexity Low_complexity 1 35 0 286 321 67 15 chr13 37872549 37872683 -81872215 - MIR SINE MIR -31 231 91 213 39 0 0 chr13 37872971 37872997 -81871901 + (A)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr13 37873105 37873130 -81871768 + AT_rich Low_complexity Low_complexity 1 25 0 363 176 199 37 chr13 37873546 37873682 -81871216 + MER103 DNA DNA 2 159 -7 348 250 70 16 chr13 37873823 37873951 -81870947 - Charlie2a DNA MER1_type -1 2861 2727 516 233 100 0 chr13 37873973 37874123 -81870775 - Charlie2a DNA MER1_type -1224 1638 1474 226 246 0 18 chr13 37874193 37874250 -81870648 - Charlie2b DNA MER1_type -2109 673 618 1095 160 5 30 chr13 37874250 37874450 -81870448 - AluJo SINE Alu -117 195 1 239 138 155 35 chr13 37874455 37874513 -81870385 - Charlie2b DNA MER1_type -2158 624 560 434 259 117 19 chr13 37874570 37874732 -81870166 - Charlie2b DNA MER1_type -2640 222 45 604 170 236 0 chr13 37874791 37874956 -81869942 - MER3 DNA MER1_type 0 209 6 813 238 0 5 chr13 37875502 37875687 -81869211 - MER3 DNA MER1_type -25 184 1 2190 108 7 0 chr13 37876646 37876943 -81867955 - AluSq SINE Alu -14 299 1 186 219 98 0 chr13 37878303 37878344 -81866554 - L2 LINE L2 -2 3311 3267 317 322 153 6 chr13 37878421 37878604 -81866294 + MIR SINE MIR 47 256 -6 22 35 0 0 chr13 37878789 37878818 -81866080 + AT_rich Low_complexity Low_complexity 1 29 0 263 329 65 26 chr13 37879077 37879308 -81865590 + MIR SINE MIR 23 262 0 188 278 33 56 chr13 37880590 37880680 -81864218 - MIR SINE MIR -128 134 47 2358 53 0 41 chr13 37883617 37883936 -81860962 + AluY SINE Alu 1 306 -5 26 30 0 0 chr13 37886048 37886081 -81858817 + AT_rich Low_complexity Low_complexity 1 33 0 1275 211 127 42 chr13 37886990 37887416 -81857482 - MLT1C LTR MaLR 0 467 6 354 23 0 0 chr13 37887949 37887992 -81856906 + (TG)n Simple_repeat Simple_repeat 2 44 0 327 177 16 0 chr13 37889209 37889271 -81855627 - MIR SINE MIR -43 219 157 2303 46 42 7 chr13 37889772 37890057 -81854841 + AluY SINE Alu 2 296 -15 193 240 95 32 chr13 37890533 37890635 -81854263 + MIR SINE MIR 31 145 -63 330 352 31 44 chr13 37892136 37892363 -81852535 - L2 LINE L2 -98 3174 2951 204 158 0 0 chr13 37892554 37892592 -81852306 + T-rich Low_complexity Low_complexity 2 39 0 239 235 226 20 chr13 37893092 37893194 -81851704 + MIR SINE MIR 68 190 -72 441 65 0 0 chr13 37894262 37894324 -81850574 - Alu SINE Alu -7 304 243 1919 60 0 28 chr13 37894332 37894582 -81850316 - AluY SINE Alu -40 271 29 216 106 0 64 chr13 37895788 37895835 -81849063 + (TTTAA)n Simple_repeat Simple_repeat 3 46 0 278 336 161 27 chr13 37896348 37896571 -81848327 + L3 LINE CR1 869 1121 -456 2115 168 34 31 chr13 37896587 37897135 -81847763 + MLT2A2 LTR ERVL 1 554 0 251 252 221 38 chr13 37897183 37897314 -81847584 + L3 LINE CR1 1264 1418 -159 626 293 107 18 chr13 37897328 37897553 -81847345 + MIR SINE MIR 4 248 -14 494 292 109 58 chr13 37897993 37898370 -81846528 + MLT1J LTR MaLR 108 503 -8 246 161 43 65 chr13 37898635 37898728 -81846170 + (TTTAA)n Simple_repeat Simple_repeat 4 94 0 272 264 85 54 chr13 37898820 37898949 -81845949 - L1M4 LINE L1 -1999 4147 4015 3227 155 21 3 chr13 37899648 37900215 -81844683 - L1PA16 LINE L1 -8 7596 7020 1246 136 0 0 chr13 37900217 37900408 -81844490 + AluSc SINE Alu 115 305 -4 11076 197 27 129 chr13 37900409 37902726 -81842172 - L1PA16 LINE L1 -580 7024 4473 1161 207 0 0 chr13 37902726 37902939 -81841959 - AluSg/x SINE Alu -14 296 84 11076 197 27 129 chr13 37902939 37903785 -81841113 - L1PA16 LINE L1 -3131 4473 3543 344 21 0 0 chr13 37903785 37903833 -81841065 - AluSp/q SINE Alu 0 303 256 1104 112 7 0 chr13 37903833 37903985 -81840913 - AluSp SINE Alu -160 153 1 11076 197 27 129 chr13 37903985 37904982 -81839916 - L1PA16 LINE L1 -4059 3545 2938 1396 207 13 167 chr13 37905021 37905522 -81839376 - L1PA16 LINE L1 -4893 2681 2256 26 50 0 0 chr13 37905531 37905571 -81839327 + AT_rich Low_complexity Low_complexity 1 40 0 443 296 28 22 chr13 37906352 37906531 -81838367 - L1PA16 LINE L1 -5268 2306 2127 1437 312 58 28 chr13 37906544 37907111 -81837787 - L1PA16 LINE L1 -6203 1371 788 659 191 76 0 chr13 37907400 37907557 -81837341 + MER3 DNA MER1_type 37 205 -4 4706 178 45 24 chr13 37908276 37909412 -81835486 - L1MB2 LINE L1 -1 6170 5059 1651 162 0 54 chr13 37909412 37909746 -81835152 - AluJb SINE Alu 0 318 1 4706 178 45 24 chr13 37909746 37910011 -81834887 - L1MB2 LINE L1 -1112 5059 4801 2093 138 3 13 chr13 37910011 37910323 -81834575 - AluSx SINE Alu -3 309 1 4706 178 45 24 chr13 37910323 37910804 -81834094 - L1MB2 LINE L1 -1370 4801 4237 372 22 0 0 chr13 37910804 37910849 -81834049 + (TG)n Simple_repeat Simple_repeat 2 46 0 4706 178 45 24 chr13 37910849 37910985 -81833913 - L1MB2 LINE L1 -1934 4237 4105 184 360 40 0 chr13 37911291 37911366 -81833532 - MIR3 SINE MIR -129 79 2 1879 141 59 3 chr13 37911415 37911705 -81833193 + AluSx SINE Alu 1 306 -6 392 338 48 0 chr13 37912145 37912290 -81832608 + L1ME LINE L1 5487 5638 -483 676 263 125 22 chr13 37912326 37912558 -81832340 - MIR SINE MIR 0 262 7 645 263 117 24 chr13 37912862 37913075 -81831823 - MIR SINE MIR 0 262 30 1867 142 43 43 chr13 37913294 37913668 -81831230 + THE1C LTR MaLR 1 374 -1 37 81 0 0 chr13 37913739 37913825 -81831073 + AT_rich Low_complexity Low_complexity 1 86 0 1046 310 60 8 chr13 37913893 37914258 -81830640 + L2 LINE L2 1993 2376 -938 915 98 21 0 chr13 37914436 37914579 -81830319 - MER2 DNA MER2_type -135 210 65 609 191 52 0 chr13 37914582 37914697 -81830201 - MER2 DNA MER2_type -224 121 1 659 260 126 36 chr13 37914700 37914977 -81829921 + L2 LINE L2 3005 3306 -7 246 220 17 0 chr13 37915745 37915804 -81829094 + MLT1D LTR MaLR 284 343 -162 712 233 57 25 chr13 37915810 37916089 -81828809 + L1MEc LINE L1 1542 1829 -4567 915 310 64 12 chr13 37916110 37916532 -81828366 + L1M2 LINE L1 3 446 -6403 1335 199 3 43 chr13 37917266 37917568 -81827330 + L1PA16 LINE L1 444 733 -6116 12116 227 30 12 chr13 37918039 37923307 -81821591 + L1PA16 LINE L1 1427 6860 -9 2373 253 48 19 chr13 37923346 37924602 -81820296 + L1MEc LINE L1 1864 3124 -3091 833 101 51 70 chr13 37924605 37924657 -81820241 + MER41A LTR ERV1 400 451 -103 2234 80 0 0 chr13 37924657 37924932 -81819966 + AluSc SINE Alu 35 309 0 833 101 51 70 chr13 37924932 37925037 -81819861 + MER41A LTR ERV1 451 554 0 5369 119 27 30 chr13 37925037 37925668 -81819230 + MER41A-int LTR ERV1 1 632 -5314 2304 92 16 0 chr13 37925668 37925973 -81818925 - AluSg SINE Alu 0 310 1 5369 119 27 30 chr13 37925973 37926926 -81817972 + MER41A-int LTR ERV1 632 1668 -4278 4661 112 35 18 chr13 37926969 37927880 -81817018 + MER41A-int LTR ERV1 1944 2946 -3000 * 12181 103 28 18 chr13 37927862 37930159 -81814739 + MER41B-int LTR ERV1 4092 5941 -5 3435 119 9 11 chr13 37930170 37930718 -81814180 + MER41B LTR ERV1 1 547 -88 356 238 139 5 chr13 37930726 37930949 -81813949 + L1MEc LINE L1 3116 3368 -2847 259 220 57 4 chr13 37930964 37931066 -81813832 - L1ME2 LINE L1 -63 6103 5998 25 31 0 0 chr13 37931134 37931166 -81813732 + AT_rich Low_complexity Low_complexity 1 32 0 779 175 58 0 chr13 37931203 37931357 -81813541 - MER58B DNA MER1_type -12 329 167 803 226 53 43 chr13 37931359 37931682 -81813216 + L1ME2 LINE L1 5829 6154 -10 285 183 42 42 chr13 37933646 37933717 -81811181 - MIR SINE MIR -128 134 64 196 244 22 0 chr13 37933717 37933762 -81811136 - MIR SINE MIR -155 107 62 952 240 69 38 chr13 37934043 37934435 -81810463 - MER96B DNA MER1_type? -1 416 13 273 250 229 14 chr13 37934558 37934698 -81810200 - MIR SINE MIR -65 197 28 26 0 0 0 chr13 37935215 37935241 -81809657 + AT_rich Low_complexity Low_complexity 1 26 0 247 309 21 31 chr13 37935721 37935818 -81809080 + L2 LINE L2 3208 3303 -10 2113 127 0 7 chr13 37936418 37936717 -81808181 - AluSg SINE Alu -13 297 1 250 184 0 41 chr13 37936983 37937032 -81807866 + MER5B DNA MER1_type 8 54 -124 401 347 84 22 chr13 37937342 37937662 -81807236 - L2 LINE L2 -743 2571 2232 236 64 21 43 chr13 37937671 37937718 -81807180 + LTR14B LTR ERVK 1 46 -562 * 1916 122 98 16 chr13 37937706 37938074 -81806824 + LTR14B LTR ERVK 211 608 0 266 335 111 47 chr13 37938111 37938663 -81806235 - L2 LINE L2 -1120 2194 1608 434 271 125 49 chr13 37940201 37941164 -81803734 - L1M4 LINE L1 -2845 3301 2266 186 43 0 0 chr13 37941186 37941209 -81803689 + (TC)n Simple_repeat Simple_repeat 2 24 0 2569 78 24 16 chr13 37941225 37941597 -81803301 - THE1C LTR MaLR 0 375 1 540 281 22 0 chr13 37942165 37942300 -81802598 + MIR3 SINE MIR 70 207 -1 1481 197 3 36 chr13 37942520 37942825 -81802073 - AluJo SINE Alu -13 299 5 1678 235 28 40 chr13 37943498 37944069 -81800829 - L1MC4a LINE L1 -88 7720 7157 273 297 14 22 chr13 37944171 37944309 -81800589 - L1MEd LINE L1 -5914 205 69 246 32 0 0 chr13 37944684 37944715 -81800183 + (ATG)n Simple_repeat Simple_repeat 2 32 0 231 36 0 0 chr13 37945139 37945167 -81799731 + (TG)n Simple_repeat Simple_repeat 1 28 0 406 252 252 0 chr13 37946211 37946417 -81798481 + L1ME3A LINE L1 5516 5773 -397 518 257 7 0 chr13 37946429 37946569 -81798329 + L1ME3A LINE L1 6030 6170 0 327 320 112 37 chr13 37946915 37947184 -81797714 + L2 LINE L2 2241 2529 -785 501 257 118 69 chr13 37947265 37947702 -81797196 + L2 LINE L2 2352 3078 -194 240 261 29 14 chr13 37947699 37947768 -81797130 + L2 LINE L2 3225 3294 -19 * 234 349 159 0 chr13 37947870 37947996 -81796902 + L2 LINE L2 3122 3267 -5 631 169 45 9 chr13 37948048 37948193 -81796705 + MLT1A2 LTR MaLR 1 122 -252 2659 48 0 0 chr13 37948543 37948854 -81796044 - AluY SINE Alu 0 311 1 1048 117 160 34 chr13 37950043 37950249 -81794649 - LTR18B LTR ERVL 0 614 383 1209 122 15 10 chr13 37950292 37950489 -81794409 - LTR18B LTR ERVL -416 198 1 322 267 89 0 chr13 37952599 37952700 -81792198 - MIR SINE MIR -53 209 100 300 338 91 48 chr13 37952797 37953194 -81791704 - L2 LINE L2 -3 3269 2856 331 307 68 45 chr13 37953402 37953578 -81791320 + L1MC/D LINE L1 5596 5775 -2033 722 241 51 22 chr13 37954391 37954625 -81790273 + L1MC/D LINE L1 5324 5563 -605 1065 158 5 48 chr13 37954625 37954834 -81790064 - MLT2D LTR ERVL 0 414 215 781 259 54 11 chr13 37956212 37956510 -81788388 + MLT1I LTR MaLR 63 402 -7 325 296 8 16 chr13 37956829 37956954 -81787944 - MLT1H LTR MaLR -387 162 39 249 218 77 96 chr13 37957052 37957094 -81787804 + L2 LINE L2 22 63 -3251 562 231 16 55 chr13 37957094 37957276 -81787622 - MER69A DNA AcHobo -2 175 1 249 218 77 96 chr13 37957276 37957389 -81787509 + L2 LINE L2 63 174 -3140 883 291 50 18 chr13 37957410 37957692 -81787206 + L2 LINE L2 3019 3309 -4 307 213 33 0 chr13 37957791 37957852 -81787046 - MIR3 SINE MIR -22 186 124 228 216 0 14 chr13 37957853 37957927 -81786971 - Charlie2 DNA MER1_type -116 2746 2674 23300 159 29 22 chr13 37957930 37958071 -81786827 - L1PA10 LINE L1 -4 6479 6340 189 0 0 0 chr13 37958071 37958092 -81786806 + (TCCCC)n Simple_repeat Simple_repeat 1 21 0 23300 159 29 22 chr13 37958092 37963105 -81781793 - L1PA10 LINE L1 -143 6340 1277 180 77 0 0 chr13 37963105 37963131 -81781767 + (TTG)n Simple_repeat Simple_repeat 2 27 0 23300 159 29 22 chr13 37963131 37964401 -81780497 - L1PA10 LINE L1 -5206 1277 17 2155 97 0 42 chr13 37964411 37964720 -81780178 - AluSq SINE Alu -17 296 1 615 235 142 9 chr13 37964720 37965065 -81779833 - Charlie2 DNA MER1_type -171 2691 2301 1072 195 9 26 chr13 37965069 37965300 -81779598 + MER46A DNA MER2_type 1 227 -9 1025 207 40 92 chr13 37965324 37965750 -81779148 - Charlie2 DNA MER1_type -574 2288 1885 590 215 42 14 chr13 37965875 37966019 -81778879 + MER45A DNA AcHobo 31 178 0 * 623 254 85 27 chr13 37966019 37966241 -81778657 - Charlie2 DNA MER1_type -2626 236 2 2658 79 27 3 chr13 37966505 37966871 -81778027 + L1PA11 LINE L1 5798 6172 -2 195 296 0 19 chr13 37967534 37967588 -81777310 + MIR SINE MIR 23 75 -133 449 152 0 11 chr13 37967827 37967919 -81776979 - L1MDa LINE L1 -4115 2425 2335 181 325 0 0 chr13 37970197 37970237 -81774661 + L2 LINE L2 3210 3249 -23 222 333 80 0 chr13 37972229 37972304 -81772594 - L2 LINE L2 -20 3252 3172 300 264 137 61 chr13 37973001 37973198 -81771700 - HAL1 LINE L1 -2295 212 1 399 41 0 0 chr13 37973735 37973784 -81771114 + (CA)n Simple_repeat Simple_repeat 1 49 0 2043 216 50 17 chr13 37974222 37974740 -81770158 - MLT1F1 LTR MaLR -32 535 1 333 390 26 16 chr13 37974772 37974962 -81769936 + L2 LINE L2 2843 3034 -238 183 316 0 18 chr13 37975105 37975162 -81769736 + L2 LINE L2 3193 3248 -24 188 313 157 20 chr13 37975310 37975559 -81769339 - L2 LINE L2 -814 2500 2218 1961 140 20 7 chr13 37977387 37977680 -81767218 - AluSx SINE Alu -15 297 1 945 182 28 0 chr13 37977746 37977927 -81766971 + MLT1B LTR MaLR 1 186 -204 630 205 8 126 chr13 37977923 37978162 -81766736 - LTR24B LTR ERV1 -178 398 188 * 281 148 168 30 chr13 37978257 37978358 -81766540 - LTR23-int LTR ERV1 0 5123 5009 253 319 12 25 chr13 37978729 37978751 -81766147 - MER70-int LTR ERVL -328 4695 4674 338 296 8 15 chr13 37978751 37978883 -81766015 - MER110-int LTR ERV1 -467 6209 6079 2367 78 0 37 chr13 37979361 37979682 -81765216 + AluY SINE Alu 1 309 -2 382 294 74 40 chr13 37980650 37980976 -81763922 - MER110-int LTR ERV1 -2169 2478 2142 539 217 53 59 chr13 37982275 37982597 -81762301 + L1PA16 LINE L1 5812 6131 -35 1245 179 45 38 chr13 37982597 37982887 -81762011 - THE1B LTR MaLR -72 292 1 244 251 239 25 chr13 37982887 37983050 -81761848 + L1ME3A LINE L1 5913 6110 -60 186 319 134 64 chr13 37983543 37983700 -81761198 + MIR SINE MIR 1 168 -94 308 214 9 0 chr13 37983714 37983826 -81761072 + (TA)n Simple_repeat Simple_repeat 1 113 0 1242 221 52 11 chr13 37983845 37984116 -81760782 - AluJo SINE Alu -30 282 1 264 167 0 0 chr13 37984118 37984166 -81760732 + T-rich Low_complexity Low_complexity 1 48 0 6061 126 13 49 chr13 37984183 37985333 -81759565 + L1P LINE L1 3529 4637 -1509 1006 254 48 48 chr13 37985660 37985995 -81758903 + LTR16A LTR ERVL 105 439 -11 1913 117 88 0 chr13 37986264 37986538 -81758360 + AluSc SINE Alu 1 298 -11 1050 182 0 6 chr13 37987451 37987621 -81757277 - AluJb SINE Alu -19 293 125 33 0 0 0 chr13 37987621 37987654 -81757244 + AT_rich Low_complexity Low_complexity 1 33 0 305 309 71 24 chr13 37988287 37988413 -81756485 + MIR3 SINE MIR 66 197 -11 414 0 0 0 chr13 37988440 37988486 -81756412 + (TTA)n Simple_repeat Simple_repeat 3 48 0 39381 35 23 8 chr13 37988486 37994350 -81750548 - L1PA7 LINE L1 -18 6136 187 407 326 181 5 chr13 37995714 37995935 -81748963 + MIR SINE MIR 3 262 0 256 200 36 0 chr13 37997024 37997079 -81747819 + GA-rich Low_complexity Low_complexity 2 58 0 936 136 0 22 chr13 37997079 37997263 -81747635 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2238 124 7 0 chr13 37997819 37998126 -81746772 + AluSp SINE Alu 1 309 -4 269 296 148 9 chr13 37998495 37998610 -81746288 + MIR3 SINE MIR 27 157 -51 3779 125 15 61 chr13 37998832 37999767 -81745131 - L1MA5 LINE L1 -4 6296 5211 1404 76 10 0 chr13 37999771 37999968 -81744930 + L1MA1 LINE L1 6097 6295 -7 312 237 179 47 chr13 37999978 38000168 -81744730 - L1M4 LINE L1 -1623 4523 4309 439 161 35 0 chr13 38000170 38000257 -81744641 - L1M2a LINE L1 -7075 93 4 325 244 26 0 chr13 38000348 38000426 -81744472 - L3 LINE CR1 -149 1428 1349 325 297 33 6 chr13 38000504 38000686 -81744212 + L1ME LINE L1 5325 5511 -653 2042 254 29 28 chr13 38000831 38001546 -81743352 + L1ME3 LINE L1 5445 6160 -2 1096 306 30 21 chr13 38001783 38002211 -81742687 - LTR16A LTR ERVL -3 447 16 1054 339 63 18 chr13 38002681 38003394 -81741504 - ERVL LTR ERVL -951 4813 4069 2156 113 10 7 chr13 38003971 38004273 -81740625 - AluSq SINE Alu -10 303 1 421 233 11 0 chr13 38005339 38005429 -81739469 + L2 LINE L2 3182 3272 0 182 345 46 23 chr13 38005452 38005539 -81739359 + L2 LINE L2 2994 3082 -190 357 75 0 0 chr13 38005606 38005659 -81739239 + (TC)n Simple_repeat Simple_repeat 2 54 0 218 338 144 30 chr13 38006800 38007134 -81737764 + L2 LINE L2 2368 2739 -575 254 146 0 135 chr13 38008140 38008229 -81736669 + AluSq/x SINE Alu 59 135 -168 4859 55 8 0 chr13 38008860 38009496 -81735402 - L1PA7 LINE L1 -94 6060 5420 4733 115 8 0 chr13 38009492 38010239 -81734659 + L1P LINE L1 2454 3206 -2940 * 472 250 83 22 chr13 38010249 38010477 -81734421 - L1MC4a LINE L1 -1885 5923 5682 3840 100 42 8 chr13 38010978 38011618 -81733280 + L1P LINE L1 3079 3740 -2406 21 0 0 0 chr13 38011974 38011995 -81732903 + AT_rich Low_complexity Low_complexity 1 21 0 213 333 0 0 chr13 38012429 38012519 -81732379 + GA-rich Low_complexity Low_complexity 1 90 0 1070 200 37 62 chr13 38013244 38013599 -81731299 - LTR24-int LTR ERV1 -4473 650 305 490 272 21 21 chr13 38013724 38013915 -81730983 - LTR24 LTR ERV1 0 467 277 755 262 63 30 chr13 38014040 38014277 -81730621 - MIR SINE MIR -1 261 17 201 277 0 0 chr13 38014541 38014588 -81730310 + MIR SINE MIR 102 148 -114 2014 158 12 92 chr13 38014591 38015102 -81729796 + L1PB4 LINE L1 5684 6153 -3 193 158 0 26 chr13 38015103 38015141 -81729757 + MIR3 SINE MIR 137 173 -35 186 243 27 0 chr13 38015797 38015834 -81729064 - L2 LINE L2 -17 3255 3218 378 221 115 0 chr13 38015852 38015965 -81728933 - MIR SINE MIR 0 262 137 241 286 13 39 chr13 38016390 38016467 -81728431 - MER5A DNA MER1_type 0 189 115 * 258 200 29 57 chr13 38016413 38016483 -81728415 + MER5A DNA MER1_type 35 102 -87 2228 84 0 0 chr13 38017251 38017525 -81727373 - AluSc SINE Alu -15 294 21 195 254 55 0 chr13 38017608 38017663 -81727235 - L2 LINE L2 -42 3230 3173 2374 75 0 3 chr13 38017954 38018247 -81726651 - AluSq SINE Alu -9 304 13 185 333 0 0 chr13 38018250 38018301 -81726597 - MIR SINE MIR -136 126 76 523 218 132 29 chr13 38019289 38019463 -81725435 + ERVL LTR ERVL 2781 2972 -2792 793 240 204 34 chr13 38019482 38019865 -81725033 + MLT1D LTR MaLR 55 502 -3 302 183 169 0 chr13 38019897 38019968 -81724930 + LTR67 LTR ERVL 97 179 -378 335 219 68 68 chr13 38020098 38020244 -81724654 + LTR67 LTR ERVL 412 557 0 354 212 96 106 chr13 38021642 38021840 -81723058 + MLT1A1 LTR MaLR 1 196 -430 * 899 212 31 62 chr13 38021741 38022033 -81722865 + MLT2C1 LTR ERVL 115 397 0 3193 77 37 2 chr13 38022363 38022751 -81722147 + MLT2A1 LTR ERVL 1 407 -37 225 0 0 0 chr13 38022751 38022776 -81722122 + (TA)n Simple_repeat Simple_repeat 2 26 0 3193 77 37 2 chr13 38022776 38022816 -81722082 + MLT2A1 LTR ERVL 407 444 0 305 75 0 0 chr13 38024521 38024561 -81720337 - MLT2D LTR ERVL 0 520 481 333 0 0 0 chr13 38024561 38024598 -81720300 + (TG)n Simple_repeat Simple_repeat 1 37 0 2105 130 0 20 chr13 38025068 38025423 -81719475 - L1MA8 LINE L1 -430 5861 5514 324 0 0 0 chr13 38025527 38025563 -81719335 + (CA)n Simple_repeat Simple_repeat 2 37 0 273 387 21 14 chr13 38025569 38025711 -81719187 - MIR SINE MIR -73 189 47 22 0 0 0 chr13 38025996 38026018 -81718880 + AT_rich Low_complexity Low_complexity 1 22 0 1930 186 32 67 chr13 38026292 38026461 -81718437 - MLT1D LTR MaLR 0 505 332 2029 161 148 30 chr13 38026461 38026926 -81717972 - MLT2B1 LTR ERVL 0 520 1 1930 186 32 67 chr13 38026926 38027279 -81717619 - MLT1D LTR MaLR -173 332 1 306 314 157 10 chr13 38027349 38027553 -81717345 + MIR SINE MIR 3 236 -26 417 324 78 64 chr13 38028940 38029236 -81715662 + L1ME LINE L1 5316 5615 -506 2563 64 0 3 chr13 38029553 38029864 -81715034 + AluSx SINE Alu 1 310 -2 791 197 0 0 chr13 38030214 38030361 -81714537 + MLT1A1 LTR MaLR 171 317 -48 1624 205 27 19 chr13 38030531 38030897 -81714001 - MLT2D LTR ERVL -40 374 6 199 339 18 37 chr13 38031029 38031138 -81713760 + MIR3 SINE MIR 55 161 -47 2229 135 13 70 chr13 38031273 38031475 -81713423 + Tigger2 DNA MER2_type 6 218 -2500 1466 165 5 0 chr13 38031475 38031699 -81713199 + AluJb SINE Alu 1 225 -87 2229 135 13 70 chr13 38031699 38031964 -81712934 + Tigger2 DNA MER2_type 218 446 -2272 703 210 64 13 chr13 38031967 38032124 -81712774 + AluJb SINE Alu 147 311 -1 1131 129 95 0 chr13 38032125 38032335 -81712563 + Tigger2 DNA MER2_type 530 759 -1959 439 184 39 0 chr13 38032388 38032491 -81712407 + Tigger2 DNA MER2_type 2461 2567 -151 561 28 28 0 chr13 38032491 38032563 -81712335 - AluY SINE Alu -14 296 223 777 172 40 0 chr13 38032563 38032714 -81712184 + Tigger2 DNA MER2_type 2552 2708 -10 23 33 0 0 chr13 38033106 38033136 -81711762 + AT_rich Low_complexity Low_complexity 1 30 0 303 219 14 14 chr13 38033144 38033217 -81711681 - HAL1b LINE L1 -105 1243 1171 477 263 73 167 chr13 38033222 38033467 -81711431 - L2 LINE L2 -20 3293 3027 1763 53 0 18 chr13 38033467 38033694 -81711204 - L1PA8 LINE L1 0 6172 5950 419 70 0 0 chr13 38033694 38033751 -81711147 + L1P3 LINE L1 5681 5737 -435 477 263 73 167 chr13 38033751 38033886 -81711012 - L2 LINE L2 -284 3029 2897 535 295 26 11 chr13 38034985 38035175 -81709723 - HERV16 LTR ERVL -4330 666 474 425 244 79 40 chr13 38035328 38035703 -81709195 + MLT1G1 LTR MaLR 78 589 -6 301 315 31 12 chr13 38035724 38035886 -81709012 - HERV16 LTR ERVL -4680 316 152 375 318 124 32 chr13 38036638 38037016 -81707882 - LTR16A LTR ERVL -29 428 16 225 288 0 0 chr13 38038425 38038484 -81706414 - L2 LINE L2 -547 2767 2709 3957 142 47 20 chr13 38038680 38039433 -81705465 - L1MA5 LINE L1 -5 6295 5523 329 256 16 48 chr13 38040250 38040375 -81704523 - LTR16C LTR ERVL -2 489 369 619 272 138 34 chr13 38040378 38040698 -81704200 - LTR16C LTR ERVL -52 439 87 2012 109 10 10 chr13 38040844 38041165 -81703733 - AluSq SINE Alu 0 313 1 1261 242 97 21 chr13 38042546 38042984 -81701914 - MLT1C LTR MaLR 0 467 1 250 75 0 57 chr13 38043190 38043243 -81701655 - L1MC5 LINE L1 -44 7917 7868 1063 226 72 104 chr13 38043331 38043874 -81701024 - L1MC5 LINE L1 -283 7678 7176 2248 114 0 0 chr13 38043874 38044180 -81700718 - AluY SINE Alu -1 310 5 1063 226 72 104 chr13 38044180 38044575 -81700323 - L1MC5 LINE L1 -785 7176 6770 234 241 92 82 chr13 38044691 38045006 -81699892 + L1M4 LINE L1 4500 4817 -1329 350 229 7 64 chr13 38045522 38045662 -81699236 + L1ME1 LINE L1 5977 6108 -58 * 410 192 96 90 chr13 38045567 38045723 -81699175 + L1MA10 LINE L1 6175 6331 -3 331 309 64 0 chr13 38045835 38045945 -81698953 + MIR SINE MIR 76 192 -70 569 184 0 0 chr13 38046725 38046828 -81698070 - MER58 DNA MER1_type 0 2420 2318 287 243 19 93 chr13 38046840 38046947 -81697951 - MER58 DNA MER1_type -242 99 1 225 0 0 0 chr13 38047597 38047622 -81697276 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 616 301 52 32 chr13 38047705 38048320 -81696578 - L1M4 LINE L1 -1131 5015 4389 318 289 33 43 chr13 38048526 38048737 -81696161 - L1M4 LINE L1 -1988 4158 3950 6739 67 53 0 chr13 38048758 38049135 -81695763 - L1PA7 LINE L1 0 6154 5798 2420 69 6 28 chr13 38049135 38049452 -81695446 - AluY SINE Alu -1 310 1 6739 67 53 0 chr13 38049452 38050095 -81694803 - L1PA7 LINE L1 -356 5798 5124 378 0 0 0 chr13 38050611 38050653 -81694245 + (CA)n Simple_repeat Simple_repeat 2 43 0 1746 145 27 10 chr13 38050997 38051293 -81693605 - AluSx SINE Alu -11 301 1 522 285 105 19 chr13 38051573 38051945 -81692953 - L1M4 LINE L1 -2393 3753 3350 282 259 12 0 chr13 38052252 38052333 -81692565 + MLT1I LTR MaLR 326 407 -2 1948 132 0 43 chr13 38052471 38052797 -81692101 - AluSx SINE Alu 0 312 1 311 282 26 51 chr13 38052832 38053027 -81691871 - L1M4 LINE L1 -2993 3153 2964 1593 161 98 0 chr13 38053066 38053340 -81691558 + AluJo SINE Alu 9 309 -3 354 255 138 7 chr13 38053682 38053827 -81691071 - L1M4 LINE L1 -3647 2499 2336 261 248 103 8 chr13 38053984 38054101 -81690797 - L1MC5 LINE L1 -52 7909 7782 21 57 0 0 chr13 38054229 38054264 -81690634 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 38054361 38054382 -81690516 + AT_rich Low_complexity Low_complexity 1 21 0 379 319 125 83 chr13 38054453 38054600 -81690298 - L2 LINE L2 -422 2892 2753 2172 117 3 3 chr13 38054600 38054900 -81689998 + AluSq SINE Alu 1 300 -13 379 319 125 83 chr13 38054900 38056219 -81688679 - L2 LINE L2 -561 2753 1365 288 328 108 53 chr13 38057213 38057554 -81687344 - L2 LINE L2 -8 3305 2946 204 185 31 15 chr13 38059077 38059142 -81685756 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 1022 249 39 0 chr13 38059145 38059402 -81685496 + Tigger3(Golem) DNA MER2_type 17 283 -2746 5703 92 62 1 chr13 38059585 38061004 -81683894 + L1PA11 LINE L1 4697 6174 0 700 174 17 0 chr13 38061008 38061123 -81683775 - FLAM_C SINE Alu -16 117 1 196 262 0 0 chr13 38061527 38061569 -81683329 + MIR3 SINE MIR 162 203 -5 18356 111 9 13 chr13 38062157 38065165 -81679733 - L1P3 LINE L1 -2304 4157 1162 679 98 0 0 chr13 38065163 38065255 -81679643 - L1P3 LINE L1 -6365 96 5 * 381 237 46 15 chr13 38066064 38066195 -81678703 - MER103 DNA DNA -30 136 2 258 229 0 0 chr13 38066909 38066979 -81677919 - L1ME2 LINE L1 -13 6151 6082 201 176 0 0 chr13 38067418 38067452 -81677446 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 26 30 0 0 chr13 38067626 38067659 -81677239 + AT_rich Low_complexity Low_complexity 1 33 0 193 289 48 48 chr13 38069454 38069558 -81675340 + MIR SINE MIR 112 215 -47 7245 161 112 113 chr13 38069838 38071445 -81673453 + L1MC3 LINE L1 5433 7041 -744 847 156 0 15 chr13 38071445 38071580 -81673318 + AluJ SINE Alu 1 133 -169 7245 161 112 113 chr13 38071580 38071614 -81673284 + L1MC3 LINE L1 7041 7074 -711 1114 165 28 0 chr13 38071614 38071796 -81673102 + AluJ SINE Alu 122 308 -4 7245 161 112 113 chr13 38071796 38072319 -81672579 + L1MC3 LINE L1 7074 7776 -9 31 26 0 0 chr13 38072795 38072833 -81672065 + AT_rich Low_complexity Low_complexity 1 38 0 322 272 228 0 chr13 38073386 38073500 -81671398 + MIR3 SINE MIR 31 170 -38 21 36 0 0 chr13 38073652 38073680 -81671218 + AT_rich Low_complexity Low_complexity 1 28 0 1654 258 51 42 chr13 38074467 38075337 -81669561 - L1M4 LINE L1 -833 5313 4437 645 301 84 3 chr13 38075623 38075969 -81668929 - LTR68 LTR ERV1 -366 374 1 238 313 81 30 chr13 38075980 38076079 -81668819 + L2 LINE L2 3204 3307 -6 1522 219 106 47 chr13 38076079 38076591 -81668307 - MLT1F LTR MaLR 0 542 1 261 211 19 19 chr13 38077879 38077931 -81666967 - L2 LINE L2 -16 3256 3205 1139 281 46 13 chr13 38079419 38079811 -81665087 - LTR16A LTR ERVL -39 411 7 1567 184 3 9 chr13 38081104 38081420 -81663478 - L1ME2 LINE L1 -376 5936 5623 327 237 86 59 chr13 38081460 38081612 -81663286 + L1MA9 LINE L1 6119 6274 -38 23 0 0 0 chr13 38081612 38081635 -81663263 + AT_rich Low_complexity Low_complexity 1 23 0 349 200 13 13 chr13 38081666 38081741 -81663157 + MER21B LTR ERV1 16 90 -773 27 49 0 0 chr13 38081889 38081930 -81662968 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr13 38081986 38082008 -81662890 + AT_rich Low_complexity Low_complexity 1 22 0 845 252 160 69 chr13 38085106 38085242 -81659656 - MLT1E LTR MaLR -68 525 403 2339 70 10 3 chr13 38085242 38085542 -81659356 - AluY SINE Alu -9 302 1 845 252 160 69 chr13 38085542 38085634 -81659264 - MLT1E LTR MaLR -190 403 321 3505 152 0 4 chr13 38085634 38086162 -81658736 - MER1A DNA MER1_type 0 527 2 845 252 160 69 chr13 38086162 38086413 -81658485 - MLT1E LTR MaLR -272 321 1 260 298 51 47 chr13 38086523 38087167 -81657731 - L1M4 LINE L1 -2169 3977 3331 1626 191 40 35 chr13 38087404 38087776 -81657122 - MLT1A2 LTR MaLR 0 374 1 2029 214 30 13 chr13 38087799 38088258 -81656640 + MLT1C LTR MaLR 1 467 0 399 256 192 0 chr13 38089408 38089564 -81655334 + L2 LINE L2 2852 3037 -276 1996 206 84 4 chr13 38089598 38090083 -81654815 - MER74A LTR ERVL -30 528 5 4723 119 29 6 chr13 38090254 38090977 -81653921 + L1PA16 LINE L1 5418 6157 -9 791 197 0 0 chr13 38091567 38091714 -81653184 - MLT1A1 LTR MaLR -48 317 171 2617 42 0 3 chr13 38092064 38092374 -81652524 - AluYa5 SINE Alu -2 309 1 11831 81 7 0 chr13 38092375 38094479 -81650419 - L1P3 LINE L1 -393 5779 3668 298 119 0 0 chr13 38094476 38094518 -81650380 + L1P3 LINE L1 29 70 -6391 * 1040 211 87 16 chr13 38094687 38095010 -81649888 - LTR48B LTR ERV1 0 644 299 605 163 0 47 chr13 38095110 38095239 -81649659 - FAM SINE Alu -62 123 1 288 296 96 32 chr13 38095455 38095580 -81649318 - MER5B DNA MER1_type -4 174 42 392 304 61 16 chr13 38095672 38095838 -81649060 + MIR SINE MIR 10 183 -70 477 203 12 28 chr13 38096416 38096669 -81648229 + GA-rich Low_complexity Low_complexity 1 248 0 21 57 0 0 chr13 38096918 38096953 -81647945 + AT_rich Low_complexity Low_complexity 1 35 0 1145 282 30 30 chr13 38097092 38097544 -81647354 + LTR40a LTR ERVL 5 448 -14 1214 241 21 12 chr13 38097569 38097901 -81646997 + HERVL40 LTR ERVL 17 351 -5179 1517 220 80 23 chr13 38098081 38098518 -81646380 + LTR40b LTR ERVL 1 462 0 369 232 99 110 chr13 38098518 38098853 -81646045 - LTR16A1 LTR ERVL -71 386 54 560 282 153 21 chr13 38100879 38101305 -81643593 - L1ME3A LINE L1 -219 5951 5470 1910 280 55 29 chr13 38101379 38101618 -81643280 - L1ME3A LINE L1 -26 6144 5913 216 0 0 0 chr13 38101618 38101642 -81643256 + (TG)n Simple_repeat Simple_repeat 2 25 0 1910 280 55 29 chr13 38101642 38102270 -81642628 - L1ME3A LINE L1 -257 5913 5254 2009 287 90 27 chr13 38102271 38103443 -81641455 - L1ME3A LINE L1 -2366 3780 2484 2193 142 63 36 chr13 38103443 38103858 -81641040 + MSTB LTR MaLR 1 426 0 2009 287 90 27 chr13 38103858 38104248 -81640650 - L1ME3A LINE L1 -3662 2484 2120 741 304 219 43 chr13 38104420 38105205 -81639693 + L3 LINE CR1 48 970 -607 291 212 0 30 chr13 38105971 38106070 -81638828 - HAL1 LINE L1 -1042 1465 1370 1485 260 124 27 chr13 38106086 38106211 -81638687 - HAL1 LINE L1 -124 2383 2272 2317 166 23 14 chr13 38106211 38106639 -81638259 + MSTB1 LTR MaLR 1 432 0 1485 260 124 27 chr13 38106639 38107337 -81637561 - HAL1 LINE L1 -235 2272 1480 894 265 68 68 chr13 38107379 38107986 -81636912 - HAL1 LINE L1 -1730 777 168 1595 223 7 0 chr13 38107986 38108273 -81636625 - AluJo SINE Alu -23 289 1 894 265 68 68 chr13 38108273 38108431 -81636467 - HAL1 LINE L1 -2338 169 12 333 221 12 0 chr13 38108443 38108529 -81636369 + MER103 DNA DNA 55 141 -25 414 232 14 49 chr13 38108552 38108694 -81636204 - MLT1I LTR MaLR -34 375 239 455 316 126 5 chr13 38109097 38109303 -81635595 + MIR SINE MIR 28 258 -4 1756 147 48 0 chr13 38109303 38109576 -81635322 + AluSq SINE Alu 1 286 -27 423 0 0 0 chr13 38109579 38109626 -81635272 + (TA)n Simple_repeat Simple_repeat 1 47 0 264 30 0 0 chr13 38109625 38109658 -81635240 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 186 191 0 0 chr13 38109662 38109704 -81635194 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2325 98 0 0 chr13 38110003 38110299 -81634599 + AluY SINE Alu 2 297 -14 1748 186 0 11 chr13 38110392 38110763 -81634135 + L1PA14 LINE L1 2290 2656 -3490 * 9328 187 10 12 chr13 38110759 38112734 -81632164 + L1PA14 LINE L1 3266 5236 -910 1964 105 28 50 chr13 38112740 38113103 -81631795 - THE1C LTR MaLR -20 355 1 5312 143 11 2 chr13 38113118 38114016 -81630882 + L1PA14 LINE L1 5254 6159 -2 3485 120 2 22 chr13 38114381 38114923 -81629975 + LTR26B LTR ERV1 1 531 0 3632 118 13 0 chr13 38115926 38116466 -81628432 + L1PA15 LINE L1 5610 6156 -9 21 0 0 0 chr13 38116476 38116497 -81628401 + AT_rich Low_complexity Low_complexity 1 21 0 567 189 139 137 chr13 38118419 38118923 -81625975 - MLT1D LTR MaLR 0 505 1 1675 181 28 19 chr13 38119085 38119449 -81625449 + THE1C LTR MaLR 1 367 -8 9288 115 45 17 chr13 38119449 38120984 -81623914 + THE1C-int LTR MaLR 3 1580 0 1663 164 66 23 chr13 38120999 38121346 -81623552 + THE1C LTR MaLR 14 375 0 1901 181 17 39 chr13 38121868 38122283 -81622615 - MLT2D LTR ERVL -8 406 1 964 299 129 55 chr13 38122850 38123006 -81621892 + L1MC4a LINE L1 4023 4166 -1980 1380 146 33 11 chr13 38123006 38123281 -81621617 - L1MA8 LINE L1 0 6291 6011 964 299 129 55 chr13 38123281 38123490 -81621408 + L1MC4a LINE L1 4166 4358 -1788 195 42 0 0 chr13 38123490 38123514 -81621384 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 964 299 129 55 chr13 38123514 38124146 -81620752 + L1MC4a LINE L1 4358 5095 -1051 336 273 86 8 chr13 38124175 38124303 -81620595 + L1MC4a LINE L1 5195 5332 -814 2020 125 0 40 chr13 38124307 38124628 -81620270 + AluSx SINE Alu 1 308 -4 766 294 109 27 chr13 38124658 38125144 -81619754 + L1MC4a LINE L1 5412 5937 -1871 879 250 23 5 chr13 38126437 38126657 -81618241 + MER58A DNA MER1_type 1 224 0 498 303 60 11 chr13 38126752 38126937 -81617961 + MIR SINE MIR 19 212 -50 456 186 41 0 chr13 38127021 38127118 -81617780 - MLT1H1 LTR MaLR -49 506 406 749 206 7 0 chr13 38127196 38127332 -81617566 + FLAM_C SINE Alu 1 137 -6 927 255 99 14 chr13 38127332 38127614 -81617284 - MLT1H1 LTR MaLR -247 308 3 808 125 18 60 chr13 38127633 38127801 -81617097 + L1M3f LINE L1 1 161 -5167 2037 135 10 0 chr13 38127888 38128185 -81616713 + AluSx SINE Alu 7 306 -6 4700 57 0 7 chr13 38129454 38130049 -81614849 + L1PA7 LINE L1 5558 6148 -6 32 43 0 0 chr13 38130082 38130128 -81614770 + AT_rich Low_complexity Low_complexity 1 46 0 253 278 67 11 chr13 38130332 38130422 -81614476 - MIR SINE MIR -50 212 118 405 254 159 32 chr13 38130950 38131139 -81613759 + L2 LINE L2 2943 3155 -117 266 172 153 24 chr13 38131913 38131996 -81612902 - MER5A DNA MER1_type -8 181 78 229 235 0 49 chr13 38134088 38134169 -81610729 - MER103 DNA DNA -73 93 17 1351 224 53 18 chr13 38134205 38134545 -81610353 - MLT1A1 LTR MaLR -11 354 3 395 326 125 42 chr13 38135712 38136065 -81608833 + MER115 DNA AcHobo 59 440 -253 522 287 60 12 chr13 38136215 38136382 -81608516 - MIR SINE MIR -21 241 67 2211 117 0 0 chr13 38137803 38138101 -81606797 + AluSx SINE Alu 1 298 -14 491 323 68 36 chr13 38138607 38138858 -81606040 + MIR SINE MIR 4 262 0 4629 161 52 13 chr13 38139022 38139513 -81605385 - L1MA8 LINE L1 -4 6287 5817 617 40 0 56 chr13 38139513 38139638 -81605260 + (TA)n Simple_repeat Simple_repeat 2 119 0 4629 161 52 13 chr13 38139638 38140342 -81604556 - L1MA8 LINE L1 -474 5817 5045 339 262 31 10 chr13 38140510 38140637 -81604261 + MER21B LTR ERV1 24 196 -409 * 1040 274 42 83 chr13 38140636 38141250 -81603648 + MER21B LTR ERV1 126 714 -149 25 0 0 0 chr13 38142279 38142304 -81602594 + AT_rich Low_complexity Low_complexity 1 25 0 2354 95 0 0 chr13 38142320 38142616 -81602282 + AluSg SINE Alu 1 296 -14 2201 280 35 54 chr13 38142862 38143844 -81601054 + L1M4b LINE L1 18 1217 -5642 1281 237 19 57 chr13 38144310 38144720 -81600178 + L1M4b LINE L1 1211 1590 -5265 2448 201 50 4 chr13 38144720 38145217 -81599681 + MLT2B1 LTR ERVL 1 520 0 1281 237 19 57 chr13 38145217 38145487 -81599411 + L1M4b LINE L1 1590 1869 -4986 312 27 0 0 chr13 38146106 38146143 -81598755 + (TG)n Simple_repeat Simple_repeat 2 38 0 309 329 62 50 chr13 38146208 38146369 -81598529 + L2 LINE L2 3017 3179 -93 393 247 14 7 chr13 38146433 38146579 -81598319 + GA-rich Low_complexity Low_complexity 2 148 0 381 291 0 0 chr13 38148244 38148409 -81596489 + (CA)n Simple_repeat Simple_repeat 1 165 0 495 268 0 0 chr13 38148430 38148740 -81596158 + (CA)n Simple_repeat Simple_repeat 1 310 0 204 322 44 11 chr13 38149716 38149806 -81595092 + MER5A DNA MER1_type 63 155 -34 322 363 105 36 chr13 38150472 38151041 -81593857 - L2 LINE L2 0 3272 2615 385 217 20 13 chr13 38151130 38151282 -81593616 + (TA)n Simple_repeat Simple_repeat 1 153 0 587 300 137 26 chr13 38152041 38152421 -81592477 - L2 LINE L2 -784 2530 2109 4496 135 30 1 chr13 38152863 38153560 -81591338 - LTR62 LTR ERVK -2 717 1 758 252 85 30 chr13 38153877 38154242 -81590656 - L1MC4a LINE L1 -1759 6049 5665 15765 82 5 0 chr13 38154728 38157225 -81587673 + L1P3 LINE L1 3079 5589 -565 322 314 77 48 chr13 38157396 38157603 -81587295 + L2 LINE L2 1860 2072 -1242 6775 118 20 63 chr13 38157727 38157942 -81586956 + Tigger3b DNA MER2_type 3 226 -2802 1172 139 28 5 chr13 38157942 38158158 -81586740 + L1MA5 LINE L1 6078 6298 -2 6775 118 20 63 chr13 38158158 38158936 -81585962 + Tigger3b DNA MER2_type 226 932 -2096 2253 75 0 0 chr13 38158936 38159277 -81585621 - AluSc SINE Alu 0 341 1 6775 118 20 63 chr13 38159277 38159564 -81585334 + Tigger3b DNA MER2_type 932 1230 -1 234 371 0 0 chr13 38159576 38159665 -81585233 + L2 LINE L2 2260 2348 -966 419 95 54 0 chr13 38159798 38159872 -81585026 - L1MA7 LINE L1 -5 6286 6209 1229 227 175 19 chr13 38160412 38161283 -81583615 - L1ME3 LINE L1 -3 6159 5155 197 400 110 0 chr13 38161413 38161513 -81583385 + L2 LINE L2 3141 3251 -21 180 0 0 0 chr13 38161812 38161832 -81583066 + (A)n Simple_repeat Simple_repeat 1 20 0 1591 161 48 45 chr13 38162612 38162922 -81581976 - AluSx SINE Alu -1 311 1 423 0 0 0 chr13 38164254 38164301 -81580597 + (TG)n Simple_repeat Simple_repeat 2 48 0 894 155 83 22 chr13 38166244 38166425 -81578473 + LTR47A LTR ERVL 261 452 0 196 189 75 0 chr13 38166711 38166764 -81578134 + L2 LINE L2 2433 2489 -825 375 276 40 60 chr13 38166776 38166975 -81577923 - MIR SINE MIR 0 262 68 210 289 208 10 chr13 38166971 38167168 -81577730 + L2 LINE L2 2505 2740 -574 * 934 80 0 24 chr13 38167168 38167293 -81577605 + AluSq/x SINE Alu 22 143 -169 840 114 0 0 chr13 38167396 38167510 -81577388 + AluSg/x SINE Alu 190 303 -7 415 333 113 0 chr13 38167529 38167715 -81577183 + L2 LINE L2 2771 2977 -337 209 261 0 0 chr13 38167725 38167771 -81577127 + L2 LINE L2 3263 3308 -5 477 309 46 68 chr13 38168599 38169056 -81575842 + LTR16A1 LTR ERVL 8 454 -3 24 0 0 0 chr13 38169596 38169620 -81575278 + AT_rich Low_complexity Low_complexity 1 24 0 200 256 0 0 chr13 38169835 38169874 -81575024 + polypyrimidine Low_complexity Low_complexity 3 41 0 433 298 88 77 chr13 38169879 38170255 -81574643 - L2 LINE L2 0 3313 2934 416 297 0 0 chr13 38170443 38170554 -81574344 - L2 LINE L2 -13 3300 3190 362 236 114 65 chr13 38171730 38171853 -81573045 - MIR SINE MIR -112 150 22 2935 131 7 2 chr13 38172001 38172428 -81572470 + MER57B LTR ERV1 1 429 -5 361 279 36 9 chr13 38173206 38173317 -81571581 - L1MC4 LINE L1 -1319 6723 6610 322 283 0 22 chr13 38173236 38173328 -81571570 + L1MC4 LINE L1 6614 6703 -1339 * 236 188 0 0 chr13 38173330 38173378 -81571520 - LTR66 LTR ERVL -169 441 394 2115 92 31 20 chr13 38173398 38173690 -81571208 - AluSx SINE Alu -14 298 4 2099 86 45 7 chr13 38173852 38174144 -81570754 + AluY SINE Alu 1 303 -8 6675 239 28 23 chr13 38174502 38177295 -81567603 + L1PA8 LINE L1 2190 4940 -2644 1651 186 0 7 chr13 38177295 38177623 -81567275 + AluJb SINE Alu 1 312 0 6675 239 28 23 chr13 38177623 38177707 -81567191 + L1PA8 LINE L1 4940 5022 -2562 6275 183 36 37 chr13 38177711 38179298 -81565600 + L1PA8 LINE L1 5383 6983 -627 1997 100 36 0 chr13 38179298 38179578 -81565320 + AluSg SINE Alu 1 290 -20 6275 183 36 37 chr13 38179578 38180206 -81564692 + L1PA8 LINE L1 6983 7610 0 2236 75 11 0 chr13 38180418 38180726 -81564172 - AluY SINE Alu 0 311 1 2404 90 0 6 chr13 38181712 38182023 -81562875 - AluSc SINE Alu 0 309 1 1033 233 94 0 chr13 38182179 38182467 -81562431 + L1MC4 LINE L1 7728 8042 0 2436 125 117 5 chr13 38182504 38182889 -81562009 + MSTA LTR MaLR 1 428 0 279 180 0 0 chr13 38183812 38183856 -81561042 - MER58A DNA MER1_type 0 224 181 542 220 85 0 chr13 38183856 38183974 -81560924 - MER58A DNA MER1_type 0 128 1 671 184 18 0 chr13 38184310 38184424 -81560474 - Tigger3(Golem) DNA MER2_type -4 3025 2910 435 235 0 0 chr13 38184430 38184511 -81560387 - Tigger3(Golem) DNA MER2_type -2948 81 1 763 128 0 32 chr13 38185060 38185185 -81559713 - L1PA8 LINE L1 0 6172 6052 2163 229 67 20 chr13 38186971 38187465 -81557433 - LTR40a LTR ERVL -2 517 1 1367 171 0 0 chr13 38187575 38187792 -81557106 + L1PA16 LINE L1 5950 6166 0 1542 136 0 21 chr13 38188451 38188686 -81556212 + AluSx SINE Alu 1 230 -82 2223 118 0 0 chr13 38188710 38189016 -81555882 + AluSc SINE Alu 1 306 -3 429 141 0 0 chr13 38189976 38190047 -81554851 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 181 341 82 12 chr13 38190104 38190189 -81554709 + L2 LINE L2 3172 3262 -10 22 0 0 0 chr13 38191281 38191303 -81553595 + AT_rich Low_complexity Low_complexity 1 22 0 195 350 25 0 chr13 38191463 38191543 -81553355 + L3 LINE CR1 1493 1574 -3 199 231 26 0 chr13 38191890 38191929 -81552969 - L2 LINE L2 -14 3258 3219 248 335 32 19 chr13 38192555 38192710 -81552188 + MLT1L LTR MaLR 450 606 -9 251 207 0 35 chr13 38194112 38194170 -81550728 + MER58A DNA MER1_type 28 83 -24 5239 106 15 18 chr13 38194170 38194964 -81549934 + L1PA16 LINE L1 5375 6166 0 474 202 56 0 chr13 38194994 38195083 -81549815 + MER58A DNA MER1_type 131 224 0 518 237 21 53 chr13 38195149 38195339 -81549559 + L2 LINE L2 3128 3311 -2 2118 130 3 0 chr13 38195817 38196116 -81548782 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr13 38197075 38197098 -81547800 + AT_rich Low_complexity Low_complexity 1 23 0 269 269 28 46 chr13 38197267 38197375 -81547523 + LTR48B LTR ERV1 1 106 -538 * 1384 217 39 77 chr13 38197342 38197808 -81547090 + MER39 LTR ERV1 260 707 0 361 291 36 55 chr13 38197826 38198046 -81546852 + L1ME LINE L1 5607 5822 -299 213 277 77 71 chr13 38198290 38198445 -81546453 + L2 LINE L2 2918 3073 -240 259 360 90 9 chr13 38198583 38198694 -81546204 + L2 LINE L2 3153 3272 0 3832 132 0 22 chr13 38200737 38200919 -81543979 + MER1A DNA MER1_type 1 186 -2514 1900 131 64 0 chr13 38200919 38201201 -81543697 - AluSx SINE Alu -12 300 1 3832 132 0 22 chr13 38201201 38201557 -81543341 + MER1A DNA MER1_type 186 527 0 990 275 86 43 chr13 38201882 38202087 -81542811 + LTR38 LTR ERV1 94 289 -267 2536 156 2 63 chr13 38202087 38202549 -81542349 - MER57B LTR ERV1 0 434 1 990 275 86 43 chr13 38202549 38202787 -81542111 + LTR38 LTR ERV1 289 556 0 1959 110 50 17 chr13 38202796 38203096 -81541802 - AluSg SINE Alu 0 310 1 21 0 0 0 chr13 38203247 38203268 -81541630 + AT_rich Low_complexity Low_complexity 1 21 0 1028 172 25 39 chr13 38203764 38203968 -81540930 - MER3 DNA MER1_type 0 209 9 256 259 32 127 chr13 38204290 38204510 -81540388 + LTR33A LTR ERVL 325 523 0 266 211 189 21 chr13 38206845 38206940 -81537958 - MIR SINE MIR -79 129 19 262 227 160 0 chr13 38207076 38207151 -81537747 + Charlie8 DNA MER1_type 118 204 -2213 23 54 0 0 chr13 38207553 38207590 -81537308 + AT_rich Low_complexity Low_complexity 1 37 0 2249 114 3 0 chr13 38207675 38207981 -81536917 + AluSg SINE Alu 1 307 -3 264 271 105 38 chr13 38207983 38208116 -81536782 - MIR SINE MIR -108 154 13 281 149 0 21 chr13 38208959 38209006 -81535892 + MIR SINE MIR 102 147 -61 1272 178 0 9 chr13 38210703 38210933 -81533965 + AluJo SINE Alu 84 311 -1 706 194 76 0 chr13 38210954 38211098 -81533800 + L1PB4 LINE L1 6000 6154 -2 2179 97 0 7 chr13 38211119 38211428 -81533470 + AluSx SINE Alu 1 307 0 290 220 68 61 chr13 38211753 38211885 -81533013 + MIR SINE MIR 63 195 -67 186 43 0 0 chr13 38211885 38211908 -81532990 + (TG)n Simple_repeat Simple_repeat 2 24 0 2316 75 4 0 chr13 38212719 38213000 -81531898 + AluSq SINE Alu 1 282 -31 271 0 0 0 chr13 38213000 38213030 -81531868 + (CAAAA)n Simple_repeat Simple_repeat 1 170 0 32 56 0 14 chr13 38213206 38213257 -81531641 + AT_rich Low_complexity Low_complexity 1 52 -18 1847 177 33 3 chr13 38213257 38213591 -81531307 - MER2 DNA MER2_type 0 344 1 32 56 0 14 chr13 38213591 38213610 -81531288 + AT_rich Low_complexity Low_complexity 52 70 0 1440 152 21 128 chr13 38214095 38214341 -81530557 - MLT1B LTR MaLR -7 383 201 1719 184 7 3 chr13 38214341 38214646 -81530252 - AluJo SINE Alu -6 306 1 1440 152 21 128 chr13 38214646 38214828 -81530070 - MLT1B LTR MaLR -189 201 1 187 305 34 68 chr13 38214841 38214959 -81529939 - MIR3 SINE MIR -8 200 87 286 368 60 8 chr13 38215188 38215305 -81529593 - MIR3 SINE MIR -84 124 2 1733 185 81 27 chr13 38216729 38216920 -81527978 + MLT1C LTR MaLR 1 180 -287 1915 156 10 10 chr13 38216920 38217215 -81527683 + AluJb SINE Alu 1 295 -17 1733 185 81 27 chr13 38217215 38217238 -81527660 + MLT1C LTR MaLR 180 200 -267 219 69 0 0 chr13 38217238 38217267 -81527631 + (CA)n Simple_repeat Simple_repeat 2 30 0 1733 185 81 27 chr13 38217267 38217494 -81527404 + MLT1C LTR MaLR 200 467 0 225 108 0 0 chr13 38218313 38218350 -81526548 + (TG)n Simple_repeat Simple_repeat 2 38 0 2112 132 6 9 chr13 38219051 38219391 -81525507 + MER1B DNA MER1_type 1 339 0 2280 113 3 0 chr13 38220218 38220527 -81524371 + AluSp SINE Alu 1 310 -3 541 254 0 8 chr13 38220728 38220858 -81524040 - MER3 DNA MER1_type -80 129 1 2874 3 0 0 chr13 38220908 38221218 -81523680 + AluYa5 SINE Alu 1 310 -1 949 179 17 101 chr13 38222377 38222635 -81522263 + MER33 DNA MER1_type 6 229 -2356 1782 169 0 17 chr13 38222635 38222936 -81521962 - AluJo SINE Alu -16 296 1 949 179 17 101 chr13 38222936 38223023 -81521875 + MER33 DNA MER1_type 229 322 -2 344 318 104 65 chr13 38224729 38224847 -81520051 + L2 LINE L2 2912 3024 -289 722 183 27 70 chr13 38224847 38225033 -81519865 + MER5B DNA MER1_type 1 178 0 344 318 104 65 chr13 38225033 38225298 -81519600 + L2 LINE L2 3024 3310 -3 2478 93 0 0 chr13 38229579 38229890 -81515008 + AluSx SINE Alu 2 312 0 209 59 59 0 chr13 38230189 38230223 -81514675 + GA-rich Low_complexity Low_complexity 5 40 0 440 293 48 6 chr13 38232182 38232349 -81512549 + MLT1J2 LTR MaLR 3 176 -274 270 251 61 25 chr13 38232437 38232561 -81512337 + MLT1J1 LTR MaLR 290 418 -28 620 290 71 44 chr13 38232876 38233049 -81511849 - MIR SINE MIR 0 262 78 2312 93 0 3 chr13 38233049 38233351 -81511547 + AluSg1 SINE Alu 1 301 -8 620 290 71 44 chr13 38233351 38233429 -81511469 - MIR SINE MIR -184 78 4 648 158 7 96 chr13 38233842 38233988 -81510910 - FLAM_A SINE Alu 0 133 1 1751 251 46 2 chr13 38234089 38234614 -81510284 - L1ME3A LINE L1 -12 6158 5611 539 268 0 8 chr13 38236636 38236759 -81508139 + L2 LINE L2 3191 3312 -1 30 0 0 0 chr13 38239406 38239436 -81505462 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 38240084 38240106 -81504792 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr13 38240251 38240281 -81504617 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr13 38241848 38241874 -81503024 + AT_rich Low_complexity Low_complexity 1 26 0 2116 117 47 3 chr13 38242718 38243017 -81501881 + AluSp SINE Alu 1 312 -1 2676 76 8 24 chr13 38243162 38243543 -81501355 - THE1C LTR MaLR 0 375 1 1142 165 0 0 chr13 38243823 38243999 -81500899 - AluSq SINE Alu -9 304 129 261 370 101 21 chr13 38244097 38244424 -81500474 - L2 LINE L2 -409 2905 2553 2774 207 84 26 chr13 38245306 38246232 -81498666 - L1ME1 LINE L1 -3 6163 5190 541 250 0 0 chr13 38246249 38246361 -81498537 - FLAM_A SINE Alu -18 115 4 1761 202 9 40 chr13 38246388 38246611 -81498287 - L1MB4 LINE L1 0 6180 5975 2446 90 3 0 chr13 38246611 38246923 -81497975 - AluSp SINE Alu 0 313 1 1761 202 9 40 chr13 38246923 38247129 -81497769 - L1MB4 LINE L1 -205 5975 5764 1242 183 10 29 chr13 38247155 38247467 -81497431 - L1ME1 LINE L1 -985 5161 4856 5794 229 85 16 chr13 38247489 38248144 -81496754 - L1ME1 LINE L1 -1794 4352 3743 2291 140 37 57 chr13 38248144 38248580 -81496318 + MSTA LTR MaLR 2 428 0 5794 229 85 16 chr13 38248580 38250003 -81494895 - L1ME1 LINE L1 -2403 3743 2131 1537 288 19 19 chr13 38250060 38250526 -81494372 + L2 LINE L2 1750 2215 -1099 671 293 79 27 chr13 38250527 38250948 -81493950 + LTR16A LTR ERVL 1 450 0 5503 87 93 0 chr13 38250966 38251722 -81493176 + LTR12 LTR ERV1 1 826 0 1053 58 0 0 chr13 38251722 38251855 -81493043 + LTR12 LTR ERV1 582 714 0 1353 268 39 88 chr13 38251862 38252306 -81492592 + L2 LINE L2 2235 2699 -614 1314 161 99 68 chr13 38252306 38252660 -81492238 + MLT1A1 LTR MaLR 1 365 0 1353 268 39 88 chr13 38252660 38253248 -81491650 + L2 LINE L2 2699 3302 -11 186 103 0 0 chr13 38253248 38253277 -81491621 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 520 336 129 4 chr13 38254579 38254811 -81490087 - MIR SINE MIR -1 261 1 4030 209 86 34 chr13 38254949 38255178 -81489720 + Charlie1a DNA MER1_type 70 286 -2475 2863 22 0 0 chr13 38255178 38255494 -81489404 + AluYb8 SINE Alu 1 316 -2 4030 209 86 34 chr13 38255494 38256577 -81488321 + Charlie1a DNA MER1_type 286 1451 -4 2181 168 30 5 chr13 38257614 38258018 -81486880 + MSTA LTR MaLR 3 416 -12 2496 51 3 0 chr13 38258025 38258320 -81486578 + AluY SINE Alu 1 296 -15 8612 170 33 14 chr13 38258335 38259953 -81484945 + MSTA-int LTR MaLR 2 1651 0 2655 123 28 14 chr13 38259953 38260375 -81484523 + MSTA LTR MaLR 1 428 0 559 260 0 8 chr13 38260751 38260878 -81484020 + FLAM_C SINE Alu 1 126 -17 1454 160 13 78 chr13 38261018 38261127 -81483771 - AluJo SINE Alu -25 287 172 2219 126 30 38 chr13 38261127 38261493 -81483405 + THE1B LTR MaLR 2 364 0 1454 160 13 78 chr13 38261493 38261690 -81483208 - AluJo SINE Alu -140 172 1 1722 179 4 4 chr13 38261931 38262211 -81482687 - AluJb SINE Alu -26 286 7 2331 105 3 0 chr13 38262228 38262533 -81482365 - AluSq SINE Alu -7 306 1 228 329 147 59 chr13 38262934 38263104 -81481794 + MIR3 SINE MIR 11 195 -13 210 118 0 0 chr13 38263324 38263358 -81481540 + (TC)n Simple_repeat Simple_repeat 1 34 0 1526 192 17 79 chr13 38263402 38263809 -81481089 + MSTD LTR MaLR 1 382 -14 4443 232 63 31 chr13 38263814 38264115 -81480783 + MSTD-int LTR MaLR 2 292 -1443 1736 151 100 6 chr13 38264115 38264446 -81480452 + MER47A DNA MER2_type 2 363 -3 4443 232 63 31 chr13 38264446 38265384 -81479514 + MSTD-int LTR MaLR 292 1281 -454 1012 231 78 11 chr13 38265385 38265653 -81479245 + MSTD LTR MaLR 104 389 -7 379 313 76 8 chr13 38267010 38267141 -81477757 - MIR SINE MIR -76 186 47 491 176 20 0 chr13 38267519 38267621 -81477277 - U13 snRNA snRNA 0 104 1 192 179 13 115 chr13 38270682 38270760 -81474138 - L2 LINE L2 -61 3252 3183 350 179 26 13 chr13 38271093 38271171 -81473727 - MER116 DNA Mariner -1 79 1 198 0 0 0 chr13 38272325 38272347 -81472551 + (TG)n Simple_repeat Simple_repeat 1 22 0 702 101 0 18 chr13 38273577 38273686 -81471212 + L1PA8 LINE L1 6066 6172 0 401 235 0 0 chr13 38274235 38274316 -81470582 + Tigger3(Golem) DNA MER2_type 1 81 -2948 619 184 18 0 chr13 38274322 38274436 -81470462 + Tigger3(Golem) DNA MER2_type 2910 3025 -4 496 220 85 0 chr13 38274772 38274890 -81470008 + MER58A DNA MER1_type 1 128 0 256 180 0 0 chr13 38274890 38274934 -81469964 + MER58A DNA MER1_type 181 224 0 2252 125 117 5 chr13 38275857 38276242 -81468656 - MSTA LTR MaLR 0 428 1 910 229 94 0 chr13 38276279 38276567 -81468331 - L1MC4 LINE L1 0 8042 7728 2429 87 0 6 chr13 38276723 38277034 -81467864 + AluSc SINE Alu 1 309 0 2553 61 0 0 chr13 38278020 38278330 -81466568 + AluSx SINE Alu 1 310 -2 791 197 0 0 chr13 38278680 38278827 -81466071 + MLT1A1 LTR MaLR 171 317 -48 345 277 37 0 chr13 38280129 38280254 -81464644 + L1ME1 LINE L1 3729 3873 -2273 * 1792 212 62 3 chr13 38280253 38280470 -81464428 + L1ME1 LINE L1 4855 5058 -1108 2214 109 0 10 chr13 38280470 38280773 -81464125 - AluSx SINE Alu -12 300 1 1792 212 62 3 chr13 38280773 38281297 -81463601 + L1ME1 LINE L1 5058 5636 -530 423 252 61 0 chr13 38281365 38281496 -81463402 + L1ME1 LINE L1 6026 6164 -2 195 42 0 0 chr13 38281934 38281958 -81462940 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1850 150 14 7 chr13 38282088 38282382 -81462516 + AluJb SINE Alu 1 296 -16 461 71 14 0 chr13 38282953 38283023 -81461875 + (TG)n Simple_repeat Simple_repeat 2 72 0 269 283 0 47 chr13 38283051 38283157 -81461741 + T-rich Low_complexity Low_complexity 4 104 0 4498 104 2 3 chr13 38284584 38285225 -81459673 - L1PA15 LINE L1 0 6165 5526 276 256 204 64 chr13 38286373 38286545 -81458353 - MIR SINE MIR -61 201 6 21 0 0 0 chr13 38287152 38287173 -81457725 + AT_rich Low_complexity Low_complexity 1 21 0 256 291 130 72 chr13 38289331 38289692 -81455206 + L3 LINE CR1 1151 1532 -45 233 382 10 10 chr13 38290311 38290413 -81454485 + MIR SINE MIR 12 113 -149 241 298 0 0 chr13 38291024 38291081 -81453817 + L2 LINE L2 3257 3313 0 3495 158 46 3 chr13 38291179 38291793 -81453105 + LTR48B LTR ERV1 1 640 -4 187 250 0 0 chr13 38293532 38293568 -81451330 - L2 LINE L2 -15 3257 3222 21 0 0 0 chr13 38293853 38293874 -81451024 + AT_rich Low_complexity Low_complexity 1 21 0 185 366 47 91 chr13 38294688 38295027 -81449871 - L2 LINE L2 -3 3269 2946 2154 104 0 7 chr13 38296373 38296670 -81448228 - AluSx SINE Alu -17 295 1 186 71 0 0 chr13 38297094 38297122 -81447776 + (CA)n Simple_repeat Simple_repeat 1 28 0 273 297 53 90 chr13 38298421 38298687 -81446211 - L2 LINE L2 -13 3259 3004 354 323 126 6 chr13 38298706 38298873 -81446025 - MER5A DNA MER1_type 0 189 3 964 110 0 0 chr13 38299912 38300039 -81444859 - FLAM_C SINE Alu -16 127 1 25 0 0 0 chr13 38300069 38300094 -81444804 + AT_rich Low_complexity Low_complexity 1 25 0 303 255 57 57 chr13 38301813 38301919 -81442979 - L2 LINE L2 -16 3297 3192 349 344 86 16 chr13 38301995 38302123 -81442775 - L2 LINE L2 -13 3259 3123 234 130 74 0 chr13 38302362 38302416 -81442482 + MLT2B1 LTR ERVL 463 520 0 354 362 87 0 chr13 38302839 38302966 -81441932 - L2 LINE L2 -13 3259 3122 395 350 68 39 chr13 38304538 38304849 -81440049 - L2 LINE L2 -61 3252 2933 546 302 146 62 chr13 38304880 38305377 -81439521 - L2 LINE L2 -646 2668 2099 2085 147 3 0 chr13 38305377 38305670 -81439228 + AluSx SINE Alu 3 296 -16 546 302 146 62 chr13 38305670 38305838 -81439060 - L2 LINE L2 -1215 2099 1947 362 298 104 42 chr13 38306190 38306499 -81438399 + L2 LINE L2 2143 2470 -844 464 310 91 22 chr13 38308027 38308266 -81436632 - MIR SINE MIR 0 262 2 229 348 0 0 chr13 38309569 38309638 -81435260 + MIR SINE MIR 85 153 -109 401 40 0 0 chr13 38309880 38309930 -81434968 + AluY SINE Alu 1 50 -260 996 110 7 0 chr13 38309930 38310066 -81434832 + AluSp SINE Alu 14 150 -163 2084 153 34 3 chr13 38310134 38310488 -81434410 + MLT1A1 LTR MaLR 1 365 0 406 325 70 6 chr13 38311462 38311619 -81433279 + MIR3 SINE MIR 24 190 -18 1911 135 7 7 chr13 38311726 38312008 -81432890 - AluJb SINE Alu -30 282 1 184 297 31 16 chr13 38312307 38312371 -81432527 + L3b LINE CR1 1293 1357 -226 795 168 0 0 chr13 38313879 38314016 -81430882 + MER3 DNA MER1_type 67 203 -6 228 314 91 58 chr13 38314169 38314290 -81430608 + L2 LINE L2 3148 3272 0 316 250 71 0 chr13 38314599 38314711 -81430187 - L1ME4a LINE L1 -4 6117 5998 430 199 71 50 chr13 38314780 38314806 -81430092 - L1ME4a LINE L1 -252 5869 5845 2016 129 3 49 chr13 38314806 38315132 -81429766 - AluSp SINE Alu -1 312 2 430 199 71 50 chr13 38315132 38315246 -81429652 - L1ME4a LINE L1 -276 5845 5726 1007 124 0 0 chr13 38315422 38315559 -81429339 + AluSq/x SINE Alu 1 137 -175 239 0 32 0 chr13 38315562 38315593 -81429305 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 326 307 54 83 chr13 38316505 38316746 -81428152 - MIR SINE MIR -21 241 8 208 310 0 0 chr13 38317930 38317988 -81426910 - L2 LINE L2 -12 3301 3244 225 0 0 0 chr13 38318015 38318040 -81426858 + (T)n Simple_repeat Simple_repeat 1 25 0 338 300 36 27 chr13 38318093 38318203 -81426695 + MIR SINE MIR 17 127 -81 1549 198 85 0 chr13 38318356 38318685 -81426213 - MLT1A1 LTR MaLR -8 357 1 2022 129 7 10 chr13 38321094 38321397 -81423501 - AluSx SINE Alu -10 302 1 243 360 0 0 chr13 38321575 38321664 -81423234 + L2 LINE L2 2577 2665 -649 615 258 107 30 chr13 38321867 38322138 -81422760 + MLT1K LTR MaLR 297 588 0 1253 123 15 15 chr13 38322425 38322620 -81422278 - AluJb SINE Alu 0 312 118 1056 153 6 12 chr13 38322620 38322790 -81422108 - AluJo SINE Alu -143 169 1 941 209 6 0 chr13 38323111 38323283 -81421615 - MER5A DNA MER1_type 0 189 17 252 256 13 26 chr13 38323422 38323500 -81421398 - MIR3 SINE MIR -123 85 9 265 215 46 0 chr13 38324421 38324486 -81420412 - MIR SINE MIR -139 123 56 230 279 82 66 chr13 38324502 38324572 -81420326 + MER5A DNA MER1_type 1 68 -121 1703 146 36 14 chr13 38324572 38324853 -81420045 + AluJo SINE Alu 1 287 -25 230 279 82 66 chr13 38324853 38324965 -81419933 + MER5A DNA MER1_type 68 186 -3 858 227 0 0 chr13 38325133 38325296 -81419602 - FRAM SINE Alu -17 159 1 1310 236 57 64 chr13 38325325 38325902 -81418996 + L2 LINE L2 2719 3311 -2 337 221 71 0 chr13 38325902 38326015 -81418883 + MER112 DNA MER1_type 81 201 -59 278 45 136 0 chr13 38326266 38326310 -81418588 + MADE1 DNA Mariner 31 80 0 21 0 0 0 chr13 38326374 38326395 -81418503 + AT_rich Low_complexity Low_complexity 1 21 0 1960 155 16 16 chr13 38326643 38327017 -81417881 - MLT1B LTR MaLR 0 390 17 202 289 0 66 chr13 38327585 38327661 -81417237 - L2 LINE L2 -10 3262 3192 * 623 283 130 40 chr13 38327653 38328006 -81416892 + L3 LINE CR1 1178 1562 -15 210 71 0 0 chr13 38328775 38328803 -81416095 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 438 244 111 15 chr13 38329975 38330110 -81414788 - MIR SINE MIR -94 168 21 344 153 0 28 chr13 38330121 38330193 -81414705 + CT-rich Low_complexity Low_complexity 1 70 0 326 248 20 67 chr13 38330228 38330262 -81414636 - L1MA10 LINE L1 0 6334 6003 2293 87 0 13 chr13 38330262 38330560 -81414338 - AluSx SINE Alu -18 294 1 2970 227 33 50 chr13 38330560 38331532 -81413366 - L1ME1 LINE L1 -16 6150 5225 429 240 8 8 chr13 38331543 38331668 -81413230 - L1ME1 LINE L1 -1015 5131 5007 30 69 0 0 chr13 38331756 38331814 -81413084 + AT_rich Low_complexity Low_complexity 1 58 0 1695 143 71 0 chr13 38331913 38332193 -81412705 + AluJo SINE Alu 1 300 -12 2419 90 0 0 chr13 38333108 38333408 -81411490 - AluSq SINE Alu -13 300 1 21 36 0 0 chr13 38333690 38333718 -81411180 + AT_rich Low_complexity Low_complexity 1 28 0 2624 48 0 0 chr13 38334556 38334866 -81410032 + AluY SINE Alu 1 310 -1 539 270 49 6 chr13 38335835 38335998 -81408900 - MIR SINE MIR -14 248 79 230 326 146 56 chr13 38336281 38336459 -81408439 + MIR3 SINE MIR 7 200 -8 232 310 0 0 chr13 38338886 38338957 -81405941 + MIR SINE MIR 56 126 -82 240 185 131 69 chr13 38339660 38339790 -81405108 + L2 LINE L2 2140 2277 -1037 269 213 0 0 chr13 38339871 38339932 -81404966 - MER94 DNA DNA -10 124 64 735 165 9 0 chr13 38339948 38340063 -81404835 - FLAM_C SINE Alu -17 116 1 232 277 0 0 chr13 38340067 38340132 -81404766 - MER94 DNA DNA -61 73 9 227 295 91 73 chr13 38340141 38340483 -81404415 + L2 LINE L2 2550 2897 -417 272 173 5 218 chr13 38340916 38341053 -81403845 + MER5B DNA MER1_type 2 125 -64 2200 131 3 0 chr13 38341190 38341495 -81403403 + AluSq SINE Alu 1 306 -7 564 221 156 7 chr13 38343016 38343170 -81401728 + MER5B DNA MER1_type 1 177 -1 1044 231 28 24 chr13 38344382 38344633 -81400265 - MIR SINE MIR -5 257 6 282 211 78 33 chr13 38345089 38345179 -81399719 + L3 LINE CR1 471 564 -1013 253 282 13 0 chr13 38345290 38345368 -81399530 + MIR SINE MIR 59 142 -66 210 321 38 61 chr13 38345473 38345523 -81399375 + L3 LINE CR1 930 980 -597 2233 36 96 0 chr13 38345523 38345803 -81399095 + AluY SINE Alu 1 307 -4 210 321 38 61 chr13 38345803 38345883 -81399015 + L3 LINE CR1 980 1057 -520 235 336 58 39 chr13 38346917 38347021 -81397877 - L2 LINE L2 -33 3239 3134 316 254 28 0 chr13 38348420 38348491 -81396407 + L2 LINE L2 3231 3303 -10 2287 124 0 0 chr13 38351321 38351627 -81393271 - AluSx SINE Alu -6 306 1 236 213 131 0 chr13 38351677 38351738 -81393160 - L2 LINE L2 -3 3310 3242 246 302 0 0 chr13 38351885 38351948 -81392950 - MIR SINE MIR -108 154 92 254 261 0 46 chr13 38352245 38352310 -81392588 + L2 LINE L2 3211 3272 0 669 206 24 0 chr13 38352371 38352497 -81392401 + FLAM_A SINE Alu 1 129 -4 609 280 35 54 chr13 38355453 38355786 -81389112 - MLT1J LTR MaLR 0 450 80 1332 228 121 24 chr13 38357102 38357524 -81387374 - MLT1C LTR MaLR -4 463 1 913 280 36 36 chr13 38358549 38358970 -81385928 + LTR16B LTR ERVL 3 423 -41 180 284 28 64 chr13 38359810 38359919 -81384979 - L3b LINE CR1 -359 1224 1120 2430 91 3 0 chr13 38360216 38360525 -81384373 - AluSx SINE Alu -2 310 1 285 292 103 17 chr13 38360658 38361092 -81383806 + L1MC4 LINE L1 7311 7777 -184 948 191 108 0 chr13 38361149 38361343 -81383555 - MER58A DNA MER1_type -8 216 2 21 0 0 0 chr13 38361540 38361561 -81383337 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 38362877 38362901 -81381997 + AT_rich Low_complexity Low_complexity 1 24 0 556 191 0 45 chr13 38364132 38364242 -81380656 - FLAM_C SINE Alu -38 105 1 185 286 20 0 chr13 38364310 38364359 -81380539 - MIR3 SINE MIR -23 185 136 2377 48 0 24 chr13 38364664 38365004 -81379894 + AluY SINE Alu 1 333 0 315 284 35 0 chr13 38365031 38365149 -81379749 + L1ME3 LINE L1 5991 6109 -53 209 236 181 42 chr13 38365613 38365685 -81379213 - L2 LINE L2 -4 3268 3187 2375 147 15 0 chr13 38365708 38366116 -81378782 - L1MB4 LINE L1 -8 6172 5759 210 310 40 40 chr13 38366255 38366355 -81378543 + L2 LINE L2 3172 3271 -1 314 317 150 42 chr13 38366534 38366701 -81378197 + MIR3 SINE MIR 14 198 -10 2492 59 0 13 chr13 38367822 38368129 -81376769 + AluY SINE Alu 1 303 -8 422 148 86 0 chr13 38368339 38368420 -81376478 + MIR SINE MIR 70 157 -105 1163 166 5 0 chr13 38368423 38368628 -81376270 + MER2 DNA MER2_type 1 206 -139 721 190 7 15 chr13 38368650 38368787 -81376111 + AluJo SINE Alu 1 136 -176 415 184 13 0 chr13 38368840 38368916 -81375982 + MER2 DNA MER2_type 268 344 -1 282 327 19 10 chr13 38368917 38369021 -81375877 + MIR SINE MIR 156 260 -2 340 326 49 43 chr13 38369124 38369308 -81375590 + MER5A DNA MER1_type 2 186 -3 570 165 173 0 chr13 38369314 38369447 -81375451 + MER5A DNA MER1_type 1 156 -33 193 275 58 29 chr13 38370198 38370267 -81374631 + L2 LINE L2 3193 3263 -9 617 243 6 24 chr13 38371555 38371724 -81373174 + L1MC4 LINE L1 6787 6952 -1090 998 222 32 16 chr13 38371733 38372058 -81372840 + L1ME1 LINE L1 5102 5433 -733 845 233 67 33 chr13 38372054 38372324 -81372574 + L1ME1 LINE L1 4837 5115 -1031 * 2028 244 86 30 chr13 38372314 38373012 -81371886 + L1ME1 LINE L1 5425 6161 -5 968 180 78 16 chr13 38373025 38373280 -81371618 + L1ME1 LINE L1 5891 6161 -5 236 159 0 95 chr13 38373773 38373836 -81371062 - L1MC4 LINE L1 -26 8016 7960 1157 211 30 32 chr13 38373874 38373986 -81370912 - L1M4 LINE L1 -1302 4844 4733 1935 167 50 18 chr13 38373986 38374370 -81370528 - MSTD LTR MaLR 0 396 1 1157 211 30 32 chr13 38374370 38374627 -81370271 - L1M4 LINE L1 -1413 4733 4476 826 267 152 38 chr13 38376106 38376291 -81368607 + MLT1H LTR MaLR 1 164 -385 1654 166 33 33 chr13 38376291 38376598 -81368300 + AluJo SINE Alu 1 307 -5 826 267 152 38 chr13 38376598 38376887 -81368011 + MLT1H LTR MaLR 164 529 -20 330 271 0 12 chr13 38378341 38378426 -81366472 + MIR3 SINE MIR 86 169 -39 2610 142 42 2 chr13 38378666 38379076 -81365822 + MSTB LTR MaLR 1 426 0 4870 178 97 14 chr13 38379076 38379543 -81365355 + MSTB-int LTR MaLR 1 428 -1223 1704 197 7 0 chr13 38379543 38379842 -81365056 + AluJo SINE Alu 1 301 -11 4870 178 97 14 chr13 38379842 38380418 -81364480 + MSTB-int LTR MaLR 428 1130 -521 311 254 0 0 chr13 38380445 38380516 -81364382 + MSTB-int LTR MaLR 1581 1651 0 1780 152 34 133 chr13 38380517 38380991 -81363907 + MSTB LTR MaLR 2 426 0 334 224 182 79 chr13 38381086 38381251 -81363647 + MIR SINE MIR 79 260 -2 184 269 87 91 chr13 38382441 38382660 -81362238 - L2 LINE L2 -15 3257 3040 435 317 32 27 chr13 38383077 38383263 -81361635 - MIR SINE MIR -51 211 25 2477 45 7 10 chr13 38383366 38383676 -81361222 - AluY SINE Alu -2 309 1 185 299 247 0 chr13 38384147 38384224 -81360674 + MER5A DNA MER1_type 11 106 -83 1582 170 51 11 chr13 38384343 38384619 -81360279 - AluJo SINE Alu -25 287 1 272 278 0 28 chr13 38384636 38384708 -81360190 + L2 LINE L2 3203 3272 0 441 309 67 24 chr13 38384716 38384881 -81360017 - MIR SINE MIR -71 191 20 242 109 0 0 chr13 38385195 38385241 -81359657 + LTR66 LTR ERVL 394 439 -171 333 303 0 0 chr13 38385247 38385336 -81359562 - L1MC4 LINE L1 -1339 6703 6615 352 229 0 49 chr13 38385522 38385705 -81359193 + (CATATA)n Simple_repeat Simple_repeat 2 175 0 307 326 0 0 chr13 38385705 38385794 -81359104 - L1MC4 LINE L1 -1339 6703 6615 225 154 0 0 chr13 38385794 38385833 -81359065 + (CA)n Simple_repeat Simple_repeat 1 39 0 441 0 0 0 chr13 38386205 38386254 -81358644 + (CA)n Simple_repeat Simple_repeat 2 50 0 180 163 0 0 chr13 38386317 38386360 -81358538 + A-rich Low_complexity Low_complexity 5 47 0 182 274 20 0 chr13 38386966 38387017 -81357881 + MIR SINE MIR 95 146 -62 1926 152 26 0 chr13 38389572 38389874 -81355024 + AluJo SINE Alu 1 310 -2 585 266 80 35 chr13 38389938 38390137 -81354761 + MIR SINE MIR 47 254 -8 200 86 29 0 chr13 38390142 38390177 -81354721 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 257 247 37 0 chr13 38390604 38390685 -81354213 - MER58C DNA MER1_type -10 205 122 380 253 19 2 chr13 38390707 38390849 -81354049 - MER58 DNA MER1_type -71 144 2 1254 182 0 4 chr13 38390858 38391083 -81353815 + MER58A DNA MER1_type 1 224 0 401 298 11 0 chr13 38392145 38392239 -81352659 + L2 LINE L2 3158 3252 -20 567 66 0 0 chr13 38392242 38392318 -81352580 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 496 363 109 11 chr13 38392525 38392891 -81352007 + L3 LINE CR1 179 580 -997 1620 203 10 13 chr13 38393246 38393557 -81351341 - AluJo SINE Alu -2 310 1 304 200 57 9 chr13 38393625 38393730 -81351168 + (TATAA)n Simple_repeat Simple_repeat 3 112 0 186 171 0 0 chr13 38393868 38393909 -81350989 + (TG)n Simple_repeat Simple_repeat 1 41 0 4594 151 159 0 chr13 38394254 38395134 -81349764 + LTR28 LTR ERV1 1 1020 0 378 0 0 0 chr13 38395402 38395444 -81349454 + (TG)n Simple_repeat Simple_repeat 1 42 0 268 369 150 6 chr13 38397147 38397307 -81347591 + MIR SINE MIR 4 186 -76 2493 63 0 3 chr13 38397314 38397614 -81347284 + AluY SINE Alu 1 299 -12 2048 126 10 0 chr13 38397903 38398196 -81346702 + AluSx SINE Alu 1 296 -16 232 118 0 0 chr13 38399723 38399757 -81345141 + MER45A DNA AcHobo 79 112 -66 1180 173 14 34 chr13 38399757 38399965 -81344933 - AluJo SINE Alu -22 290 87 435 176 0 0 chr13 38399965 38400039 -81344859 + MER45A DNA AcHobo 105 178 0 238 255 167 59 chr13 38400100 38400202 -81344696 - L2 LINE L2 0 3313 3201 1887 128 7 38 chr13 38400752 38401041 -81343857 - AluSx SINE Alu -19 293 14 289 299 110 78 chr13 38401927 38402359 -81342539 - L2 LINE L2 -182 3090 2632 334 259 12 12 chr13 38403679 38403760 -81341138 + L2 LINE L2 3220 3300 -13 273 288 128 71 chr13 38403775 38404001 -81340897 - MIR SINE MIR -2 260 22 211 176 0 0 chr13 38404642 38404676 -81340222 + polypurine Low_complexity Low_complexity 3 36 0 230 398 24 10 chr13 38405091 38405297 -81339601 + L2 LINE L2 2232 2440 -874 308 270 112 0 chr13 38406117 38406206 -81338692 - L2 LINE L2 -40 3232 3134 2024 153 3 7 chr13 38406280 38406588 -81338310 - AluJb SINE Alu -5 307 1 311 279 171 66 chr13 38406929 38407356 -81337542 + L2 LINE L2 2842 3313 0 2229 74 60 0 chr13 38407373 38407658 -81337240 + AluSp SINE Alu 1 302 -11 24 77 0 0 chr13 38408729 38408781 -81336117 + AT_rich Low_complexity Low_complexity 1 52 0 551 199 152 18 chr13 38408782 38408953 -81335945 + MER57A LTR ERV1 206 399 -4 2273 114 0 0 chr13 38409988 38410286 -81334612 + AluSq SINE Alu 1 298 -15 1029 280 80 41 chr13 38410714 38411200 -81333698 - LTR33A LTR ERVL 0 523 19 354 316 128 30 chr13 38411319 38411452 -81333446 + L2 LINE L2 3109 3254 -18 331 181 162 0 chr13 38411579 38411684 -81333214 + MER103 DNA DNA 12 133 -33 2145 102 27 14 chr13 38412229 38412522 -81332376 - AluSg SINE Alu -13 297 1 430 242 12 50 chr13 38413365 38413526 -81331372 - MER103 DNA DNA -11 155 1 325 305 54 24 chr13 38414737 38414904 -81329994 + MER5A DNA MER1_type 3 174 -15 2175 130 0 0 chr13 38414927 38415226 -81329672 + AluSq SINE Alu 1 299 -14 14622 30 4 1 chr13 38415400 38418263 -81326635 + L1PA4 LINE L1 3304 6155 0 2024 133 17 0 chr13 38418412 38418705 -81326193 - AluSx SINE Alu -13 299 2 223 113 75 0 chr13 38419221 38419274 -81325624 + (TA)n Simple_repeat Simple_repeat 2 58 0 762 229 94 0 chr13 38419499 38419669 -81325229 + MER5A DNA MER1_type 4 189 0 2229 70 0 7 chr13 38421652 38421970 -81322928 - AluY SINE Alu 0 316 1 21 0 0 0 chr13 38426257 38426278 -81318620 + GC_rich Low_complexity Low_complexity 1 21 0 209 200 20 0 chr13 38426328 38426378 -81318520 + C-rich Low_complexity Low_complexity 4 54 0 282 180 0 0 chr13 38426974 38427035 -81317863 + CT-rich Low_complexity Low_complexity 2 62 0 678 173 100 20 chr13 38427595 38427745 -81317153 + MER20 DNA MER1_type 35 196 -23 274 276 181 39 chr13 38428623 38428750 -81316148 - MIR3 SINE MIR -28 180 36 245 268 0 12 chr13 38429379 38429461 -81315437 + MLT1L LTR MaLR 533 613 -2 233 182 26 65 chr13 38429854 38429900 -81314998 + MLT1J2 LTR MaLR 60 106 -344 3789 169 48 69 chr13 38429900 38430333 -81314565 + MER21A LTR ERV1 1 442 -489 219 36 0 0 chr13 38430333 38430361 -81314537 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3789 169 48 69 chr13 38430361 38430372 -81314526 + MER21A LTR ERV1 442 452 -479 2053 112 4 0 chr13 38430372 38430674 -81314224 + AluSx SINE Alu 6 308 0 3789 169 48 69 chr13 38430674 38431178 -81313720 + MER21A LTR ERV1 452 931 0 233 182 26 65 chr13 38431178 38431208 -81313690 + MLT1J2 LTR MaLR 106 133 -317 200 244 0 0 chr13 38432089 38432118 -81312780 + CT-rich Low_complexity Low_complexity 4 35 -13 2414 62 0 0 chr13 38432118 38432406 -81312492 - AluY SINE Alu 0 311 24 200 244 0 0 chr13 38432406 38432421 -81312477 + CT-rich Low_complexity Low_complexity 34 48 0 26 50 0 0 chr13 38432955 38432995 -81311903 + AT_rich Low_complexity Low_complexity 1 40 0 1540 116 3 99 chr13 38433393 38433686 -81311212 + AluSx SINE Alu 48 312 0 214 213 13 13 chr13 38433956 38434031 -81310867 + GA-rich Low_complexity Low_complexity 2 76 0 397 98 0 16 chr13 38436115 38436176 -81308722 + MADE1 DNA Mariner 1 60 -20 1997 151 6 12 chr13 38436216 38436561 -81308337 - MLT1A1 LTR MaLR -22 343 1 715 283 19 38 chr13 38437333 38437386 -81307512 + MIR SINE MIR 55 107 -155 2283 133 11 22 chr13 38437386 38437754 -81307144 + THE1B LTR MaLR 1 364 0 715 283 19 38 chr13 38437754 38437912 -81306986 + MIR SINE MIR 107 262 0 2348 102 0 9 chr13 38438328 38438643 -81306255 + AluSq SINE Alu 1 312 -1 23 54 0 0 chr13 38439238 38439275 -81305623 + AT_rich Low_complexity Low_complexity 1 37 0 2438 95 0 0 chr13 38439687 38439992 -81304906 + AluSq SINE Alu 1 305 -8 244 263 13 13 chr13 38440058 38440134 -81304764 + MLT1F1 LTR MaLR 50 125 -442 2186 208 58 21 chr13 38440134 38440705 -81304193 + L1MD3 LINE L1 7404 7995 0 699 143 40 16 chr13 38440782 38440908 -81303990 - FLAM_C SINE Alu 0 133 5 324 271 57 29 chr13 38440968 38441108 -81303790 - MIR SINE MIR -70 192 49 15794 172 44 13 chr13 38441192 38443011 -81301887 + L1PBa LINE L1 1 1763 -5099 2135 93 14 3 chr13 38443011 38443300 -81301598 - AluSq SINE Alu -21 292 1 15794 172 44 13 chr13 38443300 38445259 -81299639 + L1PBa LINE L1 1763 3983 -2879 362 21 0 21 chr13 38445259 38445307 -81299591 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 15794 172 44 13 chr13 38445307 38446692 -81298206 + L1PBa LINE L1 3983 5324 -1538 491 237 20 40 chr13 38446726 38446878 -81298020 - L2 LINE L2 0 3313 3165 627 301 89 17 chr13 38446947 38447429 -81297469 + L1ME LINE L1 5255 5771 -391 309 273 0 0 chr13 38447988 38448065 -81296833 - Charlie8 DNA MER1_type -5 2412 2336 1696 168 3 7 chr13 38448147 38448432 -81296466 + AluJo SINE Alu 1 284 -28 369 0 0 0 chr13 38448432 38448473 -81296425 + (CA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr13 38448472 38448493 -81296405 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 308 89 0 54 chr13 38448539 38448595 -81296303 + L1MB3 LINE L1 5912 5964 -219 917 238 24 11 chr13 38448661 38448930 -81295968 + L1MC4 LINE L1 6855 7119 -923 2027 164 0 0 chr13 38448930 38449240 -81295658 + AluSx SINE Alu 1 310 -2 917 238 24 11 chr13 38449240 38449421 -81295477 + L1MC4 LINE L1 7119 7504 -538 1883 169 16 0 chr13 38449433 38449800 -81295098 - L1MB3 LINE L1 -109 6310 5938 1036 63 8 0 chr13 38449800 38449926 -81294972 - AluSg SINE Alu -183 127 1 21 36 0 0 chr13 38449930 38449958 -81294940 + AT_rich Low_complexity Low_complexity 1 28 0 992 103 0 109 chr13 38449962 38450182 -81294716 + AluSg/x SINE Alu 127 327 0 2855 201 42 37 chr13 38450183 38451156 -81293742 - L1MB3 LINE L1 -477 5942 4958 797 159 0 36 chr13 38451156 38451294 -81293604 - FLAM_C SINE Alu 0 133 1 2855 201 42 37 chr13 38451294 38451675 -81293223 - L1MB3 LINE L1 -1461 4958 4580 * 10386 187 53 45 chr13 38451672 38452507 -81292391 - L1MB3 LINE L1 -2745 3637 2810 1896 145 28 0 chr13 38452507 38452790 -81292108 - AluSq SINE Alu -22 291 1 10386 187 53 45 chr13 38452790 38453220 -81291678 - L1MB3 LINE L1 -3572 2810 2385 317 24 24 0 chr13 38453220 38453262 -81291636 + (TG)n Simple_repeat Simple_repeat 2 44 0 10386 187 53 45 chr13 38453262 38453365 -81291533 - L1MB3 LINE L1 -3997 2385 2284 1837 203 3 0 chr13 38453365 38453676 -81291222 - AluJb SINE Alu 0 312 1 10386 187 53 45 chr13 38453676 38455898 -81289000 - L1MB3 LINE L1 -4098 2284 24 2023 120 10 10 chr13 38456576 38456875 -81288023 + AluSc SINE Alu 2 300 -9 451 57 11 45 chr13 38456875 38456963 -81287935 + (GGAA)n Simple_repeat Simple_repeat 1 85 0 2131 107 3 17 chr13 38457245 38457545 -81287353 + AluSx SINE Alu 1 296 -16 27 49 0 0 chr13 38458565 38458606 -81286292 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chr13 38459273 38459308 -81285590 + AT_rich Low_complexity Low_complexity 1 35 0 291 196 0 0 chr13 38459612 38459658 -81285240 - MER5A DNA MER1_type -10 179 134 212 358 32 21 chr13 38459625 38459720 -81285178 + MER5A DNA MER1_type 35 130 -59 * 205 139 56 0 chr13 38459768 38459804 -81285094 + CT-rich Low_complexity Low_complexity 5 42 0 2099 117 3 0 chr13 38459873 38460163 -81284735 + AluSx SINE Alu 1 291 -21 1412 51 0 6 chr13 38460334 38460510 -81284388 - AluY SINE Alu -18 293 119 974 229 57 45 chr13 38460617 38461098 -81283800 + LTR10B LTR ERV1 17 542 -5 1096 128 24 12 chr13 38461390 38461554 -81283344 + AluSg/x SINE Alu 137 302 -10 402 21 0 0 chr13 38461659 38461706 -81283192 + (TG)n Simple_repeat Simple_repeat 1 47 0 5563 60 29 7 chr13 38461874 38462593 -81282305 + MER4E LTR ERV1 1 739 -27 2158 105 7 10 chr13 38462593 38462887 -81282011 + AluSp SINE Alu 1 293 -20 5563 60 29 7 chr13 38462887 38462916 -81281982 + MER4E LTR ERV1 739 766 0 744 261 41 59 chr13 38462934 38463325 -81281573 + MER51-int LTR ERV1 3452 8576 -343 1975 152 129 62 chr13 38463545 38464064 -81280834 - MER41A LTR ERV1 0 554 1 763 116 16 8 chr13 38464070 38464191 -81280707 + MER51-int LTR ERV1 7667 7788 -28 910 127 0 36 chr13 38464191 38464357 -81280541 + MER51C LTR ERV1 481 640 0 933 148 22 50 chr13 38464386 38464568 -81280330 - AluJb SINE Alu -18 294 118 459 296 159 6 chr13 38464854 38465030 -81279868 - L3 LINE CR1 -5 1572 1370 2282 109 0 10 chr13 38465201 38465512 -81279386 - AluSc SINE Alu -1 308 1 1027 256 66 63 chr13 38465945 38466358 -81278540 + Charlie7 DNA MER1_type 8 425 -2187 2272 103 0 31 chr13 38466358 38466677 -81278221 + AluSg SINE Alu 1 309 -1 1027 256 66 63 chr13 38466677 38466821 -81278077 + Charlie7 DNA MER1_type 425 567 -2045 236 128 0 0 chr13 38466995 38467034 -81277864 + Charlie7 DNA MER1_type 2274 2312 -300 25 65 0 0 chr13 38467077 38467123 -81277775 + AT_rich Low_complexity Low_complexity 1 46 0 1139 196 33 121 chr13 38467306 38467637 -81277261 + AluJb SINE Alu 1 302 0 23 0 0 0 chr13 38467693 38467716 -81277182 + AT_rich Low_complexity Low_complexity 1 23 0 1365 226 67 35 chr13 38467758 38468016 -81276882 - MLT1A1 LTR MaLR -13 352 79 4540 50 2 0 chr13 38468016 38468574 -81276324 - L1PA8 LINE L1 -2 6170 5612 1365 226 67 35 chr13 38468574 38468656 -81276242 - MLT1A1 LTR MaLR -286 79 1 334 315 108 79 chr13 38468656 38468961 -81275937 - L2 LINE L2 -31 3241 2928 365 286 8 8 chr13 38469813 38469939 -81274959 + LTR67 LTR ERVL 426 551 -6 432 362 68 51 chr13 38469970 38470280 -81274618 - L2 LINE L2 -5 3267 2945 1970 170 11 11 chr13 38470280 38470645 -81274253 + MLT1A1 LTR MaLR 1 365 0 432 362 68 51 chr13 38470645 38470787 -81274111 - L2 LINE L2 -327 2945 2807 198 206 0 0 chr13 38470855 38470918 -81273980 + T-rich Low_complexity Low_complexity 1 63 0 191 328 0 31 chr13 38470960 38471024 -81273874 - L2 LINE L2 -575 2739 2678 21 36 0 0 chr13 38471155 38471183 -81273715 + AT_rich Low_complexity Low_complexity 1 28 0 1883 159 0 3 chr13 38471183 38471472 -81273426 - AluSx SINE Alu -24 288 1 961 111 217 21 chr13 38471877 38472066 -81272832 + MER30 DNA MER1_type 5 230 0 2149 119 30 0 chr13 38472135 38472438 -81272460 - AluSx SINE Alu 0 312 1 327 263 66 33 chr13 38473110 38473290 -81271608 - L1MC4a LINE L1 -206 5915 5723 335 220 20 0 chr13 38473313 38473413 -81271485 + CT-rich Low_complexity Low_complexity 4 105 0 1408 223 81 0 chr13 38473494 38473804 -81271094 + MLT1F LTR MaLR 204 538 -4 1238 156 33 0 chr13 38473822 38474034 -81270864 + MER20 DNA MER1_type 1 219 0 1758 158 3 17 chr13 38474068 38474366 -81270532 - AluJb SINE Alu -18 294 1 273 182 0 0 chr13 38474373 38474428 -81270470 + CT-rich Low_complexity Low_complexity 2 56 0 1849 178 3 3 chr13 38474463 38474766 -81270132 - AluJb SINE Alu -9 303 1 1300 119 0 0 chr13 38474785 38474962 -81269936 - AluSg/x SINE Alu 0 312 136 6384 32 2 14 chr13 38475910 38476698 -81268200 - L1P LINE L1 -1259 4887 4109 486 0 0 0 chr13 38479205 38479259 -81265639 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 22 80 0 0 chr13 38480078 38480128 -81264770 + AT_rich Low_complexity Low_complexity 1 50 0 360 43 0 0 chr13 38480144 38480190 -81264708 + (CA)n Simple_repeat Simple_repeat 2 47 0 493 184 0 44 chr13 38480257 38480371 -81264527 - L1MA4 LINE L1 -40 6260 6152 244 100 100 0 chr13 38480759 38480809 -81264089 - MLT2A1 LTR ERVL 0 453 399 2842 86 20 13 chr13 38480864 38481261 -81263637 - MLT2A1 LTR ERVL -44 400 1 1875 151 3 0 chr13 38481604 38481889 -81263009 + AluSg SINE Alu 22 307 -3 180 0 0 0 chr13 38481937 38481957 -81262941 + (T)n Simple_repeat Simple_repeat 1 20 0 235 323 21 11 chr13 38482971 38483064 -81261834 - L2 LINE L2 0 3313 3220 333 149 0 0 chr13 38483064 38483131 -81261767 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 311 266 114 93 chr13 38483131 38483421 -81261477 - L2 LINE L2 -824 2490 2195 579 240 8 8 chr13 38483715 38483844 -81261054 + FLAM_A SINE Alu 1 129 -4 278 294 127 0 chr13 38484340 38484466 -81260432 - MIR SINE MIR 0 262 121 2446 70 0 3 chr13 38587116 38587428 -81157470 - AluY SINE Alu 0 311 1 21 0 0 0 chr13 38587676 38587697 -81157201 + AT_rich Low_complexity Low_complexity 1 21 0 317 173 62 0 chr13 38587903 38587984 -81156914 - L1MB4 LINE L1 -2 6178 6093 4732 130 2 1 chr13 38588006 38588904 -81155994 - L1MA4 LINE L1 -289 6011 5113 3335 173 30 7 chr13 38588909 38589638 -81155260 + L1MA4 LINE L1 4336 5081 -1065 242 346 8 60 chr13 38589711 38589844 -81155054 + MIR SINE MIR 49 174 -88 31 26 0 0 chr13 38591167 38591205 -81153693 + AT_rich Low_complexity Low_complexity 1 38 0 307 71 0 0 chr13 38591207 38591249 -81153649 - AluSx SINE Alu -8 293 252 2043 105 4 0 chr13 38591249 38591525 -81153373 - AluSx SINE Alu -35 277 1 196 238 0 0 chr13 38591642 38591684 -81153214 + MIR SINE MIR 103 144 -64 2341 70 6 22 chr13 38591970 38592286 -81152612 - AluY SINE Alu 0 311 1 694 251 17 17 chr13 38594882 38595057 -81149841 + MIR SINE MIR 88 262 0 226 272 44 44 chr13 38595765 38595879 -81149019 - LTR33 LTR ERVL -384 137 24 2389 85 0 3 chr13 38595977 38596284 -81148614 - AluSx SINE Alu -6 306 1 211 133 67 0 chr13 38597804 38597877 -81147021 + A-rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr13 38598714 38598735 -81146163 + AT_rich Low_complexity Low_complexity 1 21 0 38401 69 7 4 chr13 38598740 38604875 -81140023 - L1PA5 LINE L1 -3 6151 2 2690 156 25 18 chr13 38605511 38606172 -81138726 + MER72 LTR ERV1 1 722 0 360 269 78 60 chr13 38609312 38609580 -81135318 + MARNA DNA Mariner 287 559 -27 246 314 69 29 chr13 38609714 38609816 -81135082 + MIR SINE MIR 26 131 -77 935 188 30 10 chr13 38611096 38611293 -81133605 - LTR40a LTR ERVL -1 518 318 332 331 39 0 chr13 38611287 38611465 -81133433 + MLT1L LTR MaLR 431 615 0 * 942 309 140 50 chr13 38611468 38612216 -81132682 - L2 LINE L2 -676 2638 1823 345 381 67 3 chr13 38612612 38612972 -81131926 + L2 LINE L2 1713 2095 -1219 321 303 28 67 chr13 38614941 38615119 -81129779 - L2 LINE L2 -420 2894 2724 740 234 126 14 chr13 38616115 38616337 -81128561 - MIR SINE MIR -10 252 6 2502 272 140 20 chr13 38616737 38617665 -81127233 + L2 LINE L2 1264 2302 -1012 275 250 0 24 chr13 38617744 38617828 -81127070 + MLT1L LTR MaLR 2 83 -532 1117 152 29 3 chr13 38617858 38618193 -81126705 - MSTB1 LTR MaLR 0 432 1 774 262 88 25 chr13 38618196 38618638 -81126260 + MLT1L LTR MaLR 124 593 -22 410 196 10 0 chr13 38618936 38619038 -81125860 + CT-rich Low_complexity Low_complexity 3 105 0 788 308 97 31 chr13 38619295 38619895 -81125003 - L2 LINE L2 -2 3311 2672 742 216 66 62 chr13 38619896 38620137 -81124761 - MLT1D LTR MaLR -261 244 3 222 37 0 0 chr13 38620152 38620179 -81124719 + (GA)n Simple_repeat Simple_repeat 1 27 0 1695 186 3 32 chr13 38620232 38620544 -81124354 - AluJb SINE Alu -9 303 1 606 243 44 0 chr13 38620744 38620880 -81124018 + L2 LINE L2 3172 3313 0 1608 188 33 23 chr13 38621572 38621876 -81123022 + AluJo SINE Alu 3 309 -3 261 194 14 0 chr13 38622644 38622716 -81122182 + L1MC2 LINE L1 6261 7779 -6 24 32 0 0 chr13 38623143 38623174 -81121724 + AT_rich Low_complexity Low_complexity 1 31 0 375 242 50 72 chr13 38623578 38623758 -81121140 + L1ME4a LINE L1 5219 5387 -873 2301 112 0 0 chr13 38623758 38624061 -81120837 - AluSx SINE Alu -9 303 1 375 242 50 72 chr13 38624061 38624173 -81120725 + L1ME4a LINE L1 5387 5500 -760 227 252 38 30 chr13 38624469 38624600 -81120298 + L1ME4a LINE L1 5813 5944 -177 183 268 169 0 chr13 38625777 38625848 -81119050 - MIR SINE MIR -91 117 35 22 0 0 0 chr13 38626271 38626293 -81118605 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr13 38626773 38626800 -81118098 + AT_rich Low_complexity Low_complexity 1 27 0 181 222 0 0 chr13 38627396 38627432 -81117466 + L2 LINE L2 3218 3253 -19 504 206 21 7 chr13 38627436 38627577 -81117321 + GA-rich Low_complexity Low_complexity 3 145 0 2345 107 0 3 chr13 38628416 38628725 -81116173 + AluSx SINE Alu 1 308 -4 2011 127 23 13 chr13 38628878 38629186 -81115712 - AluSx SINE Alu -1 311 1 629 259 63 44 chr13 38629187 38629392 -81115506 - MIR SINE MIR -1 261 53 399 292 65 18 chr13 38630700 38630868 -81114030 + MIR SINE MIR 73 248 -14 183 295 49 16 chr13 38631779 38631840 -81113058 - L2 LINE L2 -12 3301 3239 304 307 53 59 chr13 38632624 38632927 -81111971 - LTR33 LTR ERVL 0 521 221 249 267 40 0 chr13 38632965 38633066 -81111832 - LTR33 LTR ERVL -413 108 4 366 292 52 84 chr13 38633120 38633370 -81111528 + L1M4 LINE L1 8 249 -6293 4797 232 49 23 chr13 38633634 38637340 -81107558 + L1M4 LINE L1 543 4428 -2216 303 303 25 76 chr13 38637359 38637557 -81107341 - MIR SINE MIR -14 248 61 210 91 0 0 chr13 38638631 38638664 -81106234 + (TC)n Simple_repeat Simple_repeat 1 33 0 2045 114 23 16 chr13 38638664 38638970 -81105928 - AluSc SINE Alu -1 308 1 23 0 0 0 chr13 38640287 38640310 -81104588 + AT_rich Low_complexity Low_complexity 1 23 0 2376 77 0 3 chr13 38640830 38641127 -81103771 - AluSp SINE Alu -17 296 1 787 205 53 46 chr13 38641585 38641745 -81103153 + L1MC4 LINE L1 7756 7920 -122 420 20 0 0 chr13 38641745 38641794 -81103104 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 787 205 53 46 chr13 38641794 38641916 -81102982 + L1MC4 LINE L1 7920 8040 -2 421 294 127 27 chr13 38642300 38642521 -81102377 - MIR SINE MIR -17 245 3 211 309 0 0 chr13 38642550 38642605 -81102293 - L2 LINE L2 -9 3263 3209 460 319 38 6 chr13 38642816 38642973 -81101925 - MIR3 SINE MIR -9 199 38 255 114 0 0 chr13 38643109 38643153 -81101745 + (TG)n Simple_repeat Simple_repeat 2 45 0 249 33 0 0 chr13 38643674 38643704 -81101194 + (TG)n Simple_repeat Simple_repeat 1 30 0 956 224 85 71 chr13 38644673 38645084 -81099814 - MER39 LTR ERV1 -41 666 250 261 231 0 15 chr13 38645060 38645125 -81099773 - MER34 LTR ERV1 -429 113 50 * 287 295 116 23 chr13 38645723 38645852 -81099046 - MIR3 SINE MIR -37 171 31 870 148 7 7 chr13 38647140 38647275 -81097623 + FRAM SINE Alu 11 145 -31 21 0 0 0 chr13 38647438 38647459 -81097439 + AT_rich Low_complexity Low_complexity 1 21 0 2005 219 86 2 chr13 38648484 38648950 -81095948 + MLT1D LTR MaLR 1 505 0 724 183 0 0 chr13 38650137 38650257 -81094641 - AluJb SINE Alu -192 120 1 311 238 299 7 chr13 38650629 38650776 -81094122 + MIR3 SINE MIR 13 202 -6 2335 141 20 66 chr13 38652138 38652626 -81092272 - MER31B LTR ERV1 0 466 1 2429 82 0 3 chr13 38653026 38653331 -81091567 + AluSx SINE Alu 1 304 -8 207 266 97 0 chr13 38653380 38653474 -81091424 + MIR SINE MIR 50 154 -108 232 214 0 54 chr13 38653884 38653940 -81090958 + L2 LINE L2 3220 3272 0 24 0 0 0 chr13 38654091 38654115 -81090783 + AT_rich Low_complexity Low_complexity 1 24 0 1418 162 0 0 chr13 38654124 38654340 -81090558 - AluJo SINE Alu -10 302 87 836 255 111 15 chr13 38654420 38654691 -81090207 - L2 LINE L2 -4 3309 3013 518 294 92 14 chr13 38654931 38655149 -81089749 - L2 LINE L2 -345 2969 2735 390 21 0 0 chr13 38655157 38655204 -81089694 + (TG)n Simple_repeat Simple_repeat 2 48 0 1631 179 63 24 chr13 38655204 38655735 -81089163 - MLT2A2 LTR ERVL -5 549 1 2736 166 2 44 chr13 38655736 38656126 -81088772 - L1MB3 LINE L1 -10 6173 5813 411 43 0 43 chr13 38656126 38656195 -81088703 + (TA)n Simple_repeat Simple_repeat 1 66 0 2736 166 2 44 chr13 38656195 38656372 -81088526 - L1MB3 LINE L1 -370 5813 5630 539 250 323 0 chr13 38656372 38656604 -81088294 - L2 LINE L2 -563 2751 2445 183 42 0 0 chr13 38656813 38656837 -81088061 + (TG)n Simple_repeat Simple_repeat 2 25 0 366 260 208 0 chr13 38657225 38657379 -81087519 - MIR SINE MIR -7 255 70 214 264 56 28 chr13 38658802 38658874 -81086024 + MIR3 SINE MIR 81 154 -54 240 250 60 0 chr13 38658901 38658985 -81085913 - LTR67 LTR ERVL -3 554 466 669 246 7 115 chr13 38660394 38660682 -81084216 + L2 LINE L2 3055 3311 -2 264 30 0 0 chr13 38661139 38661172 -81083726 + (TG)n Simple_repeat Simple_repeat 2 34 0 403 259 84 78 chr13 38661755 38662099 -81082799 - HAL1 LINE L1 -879 1628 1283 416 297 116 60 chr13 38662154 38662800 -81082098 - HAL1 LINE L1 -1778 729 48 304 209 0 45 chr13 38663116 38663183 -81081715 - L2 LINE L2 0 3313 3250 886 329 90 26 chr13 38663633 38663704 -81081194 + L2 LINE L2 2365 2430 -842 2373 174 26 9 chr13 38663704 38664159 -81080739 - MLT1C LTR MaLR -4 463 1 886 329 90 26 chr13 38664159 38664735 -81080163 + L2 LINE L2 2430 3051 -221 1144 233 152 37 chr13 38664755 38665184 -81079714 + MLT1D LTR MaLR 22 499 -6 242 310 76 44 chr13 38665235 38665393 -81079505 + L2 LINE L2 3083 3245 -27 563 290 35 66 chr13 38666096 38666413 -81078485 + MLT1K LTR MaLR 167 473 -115 214 243 14 40 chr13 38667948 38668022 -81076876 + (TG)n Simple_repeat Simple_repeat 2 73 0 300 233 0 0 chr13 38668043 38668116 -81076782 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 33 43 0 0 chr13 38668143 38668190 -81076708 + AT_rich Low_complexity Low_complexity 1 47 0 293 301 9 26 chr13 38668390 38668503 -81076395 - MIR SINE MIR -49 159 48 1219 160 62 4 chr13 38669752 38669996 -81074902 - L1MB1 LINE L1 -1 6167 5910 3181 188 20 4 chr13 38669998 38670684 -81074214 + L1 LINE L1 4448 5144 -1002 13767 197 27 43 chr13 38670937 38674107 -81070791 - L1MA5 LINE L1 -4 7358 4336 1475 197 38 4 chr13 38674107 38674371 -81070527 - AluJo SINE Alu -39 273 1 13767 197 27 43 chr13 38674371 38675896 -81069002 - L1MA5 LINE L1 -3026 4336 2789 2031 225 11 17 chr13 38675883 38676404 -81068494 - L1MA5 LINE L1 -4915 2294 1777 * 1814 262 35 53 chr13 38676439 38677277 -81067621 - L1MA5 LINE L1 -6409 800 1 24 0 0 0 chr13 38677938 38677962 -81066936 + AT_rich Low_complexity Low_complexity 1 24 0 2012 75 3 98 chr13 38678142 38678446 -81066452 + AluY SINE Alu 1 272 -39 180 0 0 0 chr13 38678446 38678466 -81066432 + (CA)n Simple_repeat Simple_repeat 1 20 0 2012 75 3 98 chr13 38678466 38678496 -81066402 + AluY SINE Alu 272 303 -8 448 261 73 0 chr13 38679473 38679638 -81065260 - HAL1 LINE L1 -353 2154 1978 2375 271 90 28 chr13 38679642 38680785 -81064113 - HAL1 LINE L1 -1245 1262 49 521 258 48 0 chr13 38680864 38680988 -81063910 + MER91B DNA MER1_type 1 130 -60 236 323 32 21 chr13 38681005 38681098 -81063800 + MER91B DNA MER1_type 90 183 -7 922 136 4 140 chr13 38682243 38682471 -81062427 + L1PA16 LINE L1 5961 6157 -9 6854 62 1 0 chr13 38682641 38683511 -81061387 + L1PA6 LINE L1 5282 6152 -2 606 275 130 5 chr13 38684070 38684270 -81060628 + MIR SINE MIR 14 238 -24 22 56 0 0 chr13 38684388 38684424 -81060474 + AT_rich Low_complexity Low_complexity 1 36 0 2311 109 0 0 chr13 38684432 38684736 -81060162 + AluSq SINE Alu 1 304 -9 230 250 40 81 chr13 38685166 38685290 -81059608 + HAL1b LINE L1 589 707 -641 404 315 149 41 chr13 38685469 38685859 -81059039 + MLT1L LTR MaLR 41 472 -143 385 321 86 45 chr13 38685873 38686116 -81058782 + L1M4 LINE L1 2787 3039 -3107 4536 35 0 0 chr13 38686461 38686998 -81057900 + L1PA4 LINE L1 5611 6147 -8 400 257 75 35 chr13 38687141 38687367 -81057531 + L1ME4a LINE L1 5664 5898 -223 405 0 0 0 chr13 38687684 38687729 -81057169 + (TG)n Simple_repeat Simple_repeat 2 46 0 2399 66 7 0 chr13 38688372 38688661 -81056237 - AluYa5 SINE Alu -7 304 14 2328 87 0 0 chr13 38689840 38690127 -81054771 + AluSc SINE Alu 1 287 -22 287 313 64 21 chr13 38690834 38690982 -81053916 - MIR SINE MIR -63 145 2 233 168 9 224 chr13 38691105 38691212 -81053686 - MIR SINE MIR -1 261 178 255 271 57 41 chr13 38691411 38691533 -81053365 - MIR SINE MIR -137 125 2 225 294 55 84 chr13 38692702 38692977 -81051921 - MLT1L LTR MaLR -182 433 167 1261 178 47 34 chr13 38693627 38693947 -81050951 + MER33 DNA MER1_type 1 324 0 211 194 0 0 chr13 38694119 38694155 -81050743 + (ATG)n Simple_repeat Simple_repeat 3 38 0 12370 231 20 21 chr13 38695785 38700012 -81044886 + L1PA15 LINE L1 1081 5309 -1488 5769 98 39 3 chr13 38700042 38701528 -81043370 + L1PA15 LINE L1 5280 6811 -5 237 232 0 18 chr13 38701918 38701974 -81042924 + G-rich Low_complexity Low_complexity 3 57 0 217 347 174 0 chr13 38705336 38705434 -81039464 + L2 LINE L2 3150 3264 -8 2107 129 10 0 chr13 38705695 38706004 -81038894 - AluSx SINE Alu 0 312 1 509 311 0 0 chr13 38707333 38707455 -81037443 - L2 LINE L2 -1 3271 3150 809 197 111 5 chr13 38707462 38707660 -81037238 - MER58A DNA MER1_type -5 219 1 445 343 106 35 chr13 38707852 38708278 -81036620 - L2 LINE L2 -337 2977 2522 295 21 64 0 chr13 38709248 38709295 -81035603 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 6286 23 8 10 chr13 38709295 38710083 -81034815 - L1PA3 LINE L1 -16 6139 5354 22 56 0 0 chr13 38711343 38711379 -81033519 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr13 38711578 38711598 -81033300 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1123 256 34 21 chr13 38711849 38712267 -81032631 - Charlie7 DNA MER1_type -461 2151 1729 571 261 40 27 chr13 38712271 38712493 -81032405 - Charlie7 DNA MER1_type -2091 521 297 3329 94 13 0 chr13 38712754 38713213 -81031685 - L1PA11 LINE L1 0 6174 5710 294 233 0 68 chr13 38714505 38714608 -81030290 - MIR SINE MIR -56 206 111 1840 135 40 4 chr13 38714626 38714951 -81029947 - AluSx SINE Alu 0 335 1 1066 205 68 34 chr13 38715346 38715693 -81029205 - MSTD LTR MaLR 0 396 1 1421 217 98 61 chr13 38715695 38716220 -81028678 + MLT1F1 LTR MaLR 25 567 0 199 185 358 0 chr13 38716576 38716657 -81028241 + MIR SINE MIR 117 226 -36 260 231 0 0 chr13 38716675 38716727 -81028171 - MIR SINE MIR -60 148 97 359 185 0 0 chr13 38717867 38717932 -81026966 - U4 snRNA snRNA -80 65 1 325 343 42 30 chr13 38718130 38718366 -81026532 + L2 LINE L2 2518 2756 -558 532 278 64 71 chr13 38718615 38718910 -81025988 + L2 LINE L2 3021 3313 0 262 379 85 26 chr13 38719243 38719515 -81025383 + L2 LINE L2 2981 3268 -4 1144 70 6 0 chr13 38720455 38720611 -81024287 + L1PA13 LINE L1 5564 5720 -454 479 93 0 103 chr13 38720611 38720716 -81024182 + L1PA13 LINE L1 6064 6159 -4 808 320 128 43 chr13 38722258 38723020 -81021878 + L2 LINE L2 2329 3173 -99 1622 171 45 7 chr13 38723020 38723312 -81021586 + AluJb SINE Alu 1 303 -9 808 320 128 43 chr13 38723312 38723422 -81021476 + L2 LINE L2 3173 3272 0 219 204 0 0 chr13 38724206 38724255 -81020643 + CT-rich Low_complexity Low_complexity 4 52 0 200 233 0 0 chr13 38724257 38724300 -81020598 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 251 320 21 31 chr13 38724315 38724412 -81020486 - L2 LINE L2 -50 3263 3168 227 368 26 0 chr13 38724535 38724611 -81020287 - L2 LINE L2 -204 3068 2991 260 67 0 67 chr13 38724853 38724913 -81019985 + (CA)n Simple_repeat Simple_repeat 2 57 0 279 0 0 0 chr13 38725342 38725373 -81019525 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 322 308 83 30 chr13 38727662 38727831 -81017067 + MIR SINE MIR 56 233 -29 1546 220 37 135 chr13 38728216 38729237 -81015661 - L1MC5 LINE L1 -423 7818 6898 24 53 0 0 chr13 38729559 38729597 -81015301 + AT_rich Low_complexity Low_complexity 1 38 0 1334 247 146 2 chr13 38729765 38730243 -81014655 - L1MC5 LINE L1 -1879 6209 5663 437 309 80 41 chr13 38730506 38731094 -81013804 - L1MC5 LINE L1 -1094 5332 4722 291 284 82 48 chr13 38731097 38731575 -81013323 - L1MC5 LINE L1 -5034 1392 899 550 231 81 6 chr13 38731849 38732009 -81012889 - MLT1D LTR MaLR 0 505 334 537 190 32 38 chr13 38732043 38732201 -81012697 + MER53 DNA DNA 28 184 -5 * 1329 211 12 36 chr13 38732184 38732520 -81012378 - MLT1D LTR MaLR -177 328 1 796 183 56 17 chr13 38732533 38732713 -81012185 + MER53 DNA DNA 1 187 -2 3160 133 2 4 chr13 38734310 38734827 -81010071 + L1MA5A LINE L1 5508 6023 -274 1274 122 39 24 chr13 38734851 38734935 -81009963 + L1MC3 LINE L1 7527 7608 -177 2052 131 3 7 chr13 38734935 38735269 -81009629 + AluSx SINE Alu 1 333 0 1274 122 39 24 chr13 38735269 38735437 -81009461 + L1MC3 LINE L1 7608 7784 -1 2037 129 0 3 chr13 38735859 38736145 -81008753 - AluSx SINE Alu -15 297 13 385 258 18 60 chr13 38736201 38736368 -81008530 - L1MC5 LINE L1 -50 7911 7752 226 307 166 57 chr13 38736393 38736676 -81008222 - L2 LINE L2 -15 3298 2985 7636 15 0 0 chr13 38736897 38738140 -81006758 - L1HS LINE L1 0 6155 4913 3454 56 6 0 chr13 38740331 38740799 -81004099 - L1P LINE L1 -3813 2333 1863 2470 98 3 3 chr13 38740796 38741172 -81003726 - L1P LINE L1 -4759 1387 1012 * 7223 45 8 2 chr13 38741172 38742171 -81002727 + L1PA5 LINE L1 5146 6150 -4 2272 109 3 3 chr13 38742659 38742972 -81001926 + AluSq SINE Alu 1 313 0 1988 148 26 3 chr13 38743918 38744223 -81000675 + AluSx SINE Alu 1 312 0 540 248 86 40 chr13 38744418 38744553 -81000345 + MIR SINE MIR 53 201 -61 2444 100 0 0 chr13 38744553 38744863 -81000035 + AluSg SINE Alu 1 310 0 540 248 86 40 chr13 38744863 38744925 -80999973 + MIR SINE MIR 201 259 -3 250 135 0 96 chr13 38748196 38748248 -80996650 + L2 LINE L2 2709 2755 -559 309 325 60 13 chr13 38748338 38748489 -80996409 + MIR SINE MIR 48 205 -57 360 304 123 57 chr13 38748568 38748973 -80995925 - L2 LINE L2 -50 3263 2832 535 210 81 16 chr13 38749068 38749192 -80995706 - FLAM_C SINE Alu 0 133 2 2063 164 125 74 chr13 38749919 38749956 -80994942 - MLT2B2 LTR ERVL 0 515 481 432 0 0 0 chr13 38749956 38750004 -80994894 + (GA)n Simple_repeat Simple_repeat 1 48 0 2063 164 125 74 chr13 38750004 38750454 -80994444 - MLT2B2 LTR ERVL -34 481 3 2979 118 7 0 chr13 38750956 38751381 -80993517 - MSTA LTR MaLR 0 428 1 203 383 78 8 chr13 38751714 38751842 -80993056 - L2 LINE L2 -43 3229 3093 243 140 0 0 chr13 38753615 38753665 -80991233 + (CA)n Simple_repeat Simple_repeat 2 51 0 32 43 0 0 chr13 38754869 38754915 -80989983 + AT_rich Low_complexity Low_complexity 1 46 0 10009 25 4 1 chr13 38754918 38756878 -80988020 - L1PA3 LINE L1 0 6155 4195 296 227 0 0 chr13 38756972 38757038 -80987860 + MER113 DNA MER1_type? 456 521 0 1051 247 79 25 chr13 38757428 38757955 -80986943 + MLT2F LTR ERVL 1 601 -62 727 189 0 40 chr13 38757959 38758107 -80986791 + Tigger2 DNA MER2_type 2577 2718 0 13962 131 6 4 chr13 38758247 38760617 -80984281 - L1P LINE L1 -1038 5108 2735 1415 215 16 0 chr13 38760616 38760932 -80983966 + L1ME1 LINE L1 5840 6160 -6 * 31 112 0 0 chr13 38761544 38761687 -80983211 + AT_rich Low_complexity Low_complexity 1 143 0 383 219 18 6 chr13 38761703 38761867 -80983031 + (TA)n Simple_repeat Simple_repeat 1 166 0 228 214 39 48 chr13 38761870 38761973 -80982925 + (TATATG)n Simple_repeat Simple_repeat 5 106 0 342 253 1 94 chr13 38761993 38762159 -80982739 + L1MC4 LINE L1 1988 7019 -1303 2153 136 7 0 chr13 38763137 38763446 -80981452 - AluSx SINE Alu -1 311 1 463 317 17 17 chr13 38763558 38763738 -80981160 - MIR3 SINE MIR -11 197 18 247 366 41 41 chr13 38763844 38764016 -80980882 + MER5A DNA MER1_type 18 189 0 373 299 174 11 chr13 38764046 38764230 -80980668 + MIR SINE MIR 43 256 -6 21 0 0 0 chr13 38764347 38764368 -80980530 + AT_rich Low_complexity Low_complexity 1 21 0 1381 225 18 3 chr13 38764633 38764967 -80979931 - L1ME2 LINE L1 -9 6155 5817 2480 38 0 0 chr13 38765059 38765351 -80979547 - AluY SINE Alu -19 292 1 1282 233 37 43 chr13 38765785 38766245 -80978653 + Charlie7 DNA MER1_type 265 721 -1891 607 290 207 16 chr13 38767911 38768381 -80976517 - L2 LINE L2 -5 3308 2750 1230 189 60 98 chr13 38768394 38768791 -80976107 - MLT1B LTR MaLR -8 382 1 1227 264 338 8 chr13 38768792 38769564 -80975334 - L2 LINE L2 -561 2753 1727 220 222 141 40 chr13 38769650 38769749 -80975149 + MIR SINE MIR 97 205 -57 392 296 28 0 chr13 38770011 38770119 -80974779 + MIR SINE MIR 73 183 -79 1698 222 18 22 chr13 38771267 38771843 -80973055 + LTR40a LTR ERVL 1 519 0 984 172 0 0 chr13 38771874 38772031 -80972867 + FAM SINE Alu 6 162 -23 2037 141 0 0 chr13 38772046 38772336 -80972562 + AluSx SINE Alu 1 290 -22 543 43 0 0 chr13 38772411 38772481 -80972417 + (TG)n Simple_repeat Simple_repeat 1 70 0 390 265 68 8 chr13 38772589 38772706 -80972192 + L2 LINE L2 3187 3310 -3 201 342 44 61 chr13 38772912 38773026 -80971872 + MIR3 SINE MIR 95 206 -2 2400 101 0 0 chr13 38773424 38773732 -80971166 + AluSx SINE Alu 1 308 -4 2311 127 12 0 chr13 38775985 38776307 -80968591 + L1PA16 LINE L1 5832 6157 -9 207 0 0 0 chr13 38777020 38777043 -80967855 + (TG)n Simple_repeat Simple_repeat 2 24 0 294 255 21 11 chr13 38777073 38777167 -80967731 + (TA)n Simple_repeat Simple_repeat 2 96 0 2171 128 3 0 chr13 38778268 38778573 -80966325 + AluSx SINE Alu 1 306 -6 686 227 29 29 chr13 38780549 38780754 -80964144 + MER8 DNA MER2_type 20 345 0 253 170 21 0 chr13 38781218 38781265 -80963633 - L2 LINE L2 -5 3267 3220 2150 69 0 0 chr13 38782215 38782475 -80962423 + AluSx SINE Alu 32 291 -21 1712 238 83 65 chr13 38782488 38782932 -80961966 + MER97c DNA MER1_type? 45 479 -611 1742 171 53 73 chr13 38782932 38783330 -80961568 - MLT1B LTR MaLR 0 390 1 1712 238 83 65 chr13 38783330 38783356 -80961542 + MER97c DNA MER1_type? 479 503 -587 2199 130 0 0 chr13 38783356 38783663 -80961235 + AluSx SINE Alu 1 307 -5 1712 238 83 65 chr13 38783663 38783872 -80961026 + MER97c DNA MER1_type? 503 707 -383 2115 121 30 0 chr13 38783872 38784169 -80960729 + AluSc SINE Alu 1 306 -3 1712 238 83 65 chr13 38784169 38784238 -80960660 + MER97c DNA MER1_type? 707 773 -317 526 163 0 0 chr13 38784238 38784318 -80960580 + MADE1 DNA Mariner 1 80 0 1712 238 83 65 chr13 38784318 38784387 -80960511 + MER97c DNA MER1_type? 773 880 -210 402 344 158 4 chr13 38784740 38785019 -80959879 - MER115 DNA AcHobo -287 406 85 2168 128 0 0 chr13 38785297 38785595 -80959303 - AluSx SINE Alu -14 298 1 243 0 0 0 chr13 38786791 38786818 -80958080 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5031 161 17 19 chr13 38786819 38788533 -80956365 - L1PA16 LINE L1 -177 5989 4273 182 298 140 89 chr13 38788987 38789279 -80955619 - L2 LINE L2 -1022 2292 1986 27 0 0 0 chr13 38789297 38789324 -80955574 + AT_rich Low_complexity Low_complexity 1 27 0 892 206 0 0 chr13 38789324 38789484 -80955414 + AluJo SINE Alu 1 160 -152 1869 53 109 0 chr13 38791401 38791648 -80953250 + LTR12 LTR ERV1 1 274 -440 297 303 10 0 chr13 38791652 38791751 -80953147 + LTR30 LTR ERV1 544 643 -79 1038 159 176 2 chr13 38791751 38791977 -80952921 + LTR12 LTR ERV1 73 614 -100 462 287 69 21 chr13 38792511 38792699 -80952199 + L1ME4a LINE L1 5669 5865 -256 206 234 4 34 chr13 38793745 38793811 -80951087 - MIR SINE MIR -69 139 74 404 331 18 12 chr13 38794858 38795021 -80949877 + MIR SINE MIR 73 236 -26 439 221 213 0 chr13 38795033 38795155 -80949743 - MIR SINE MIR 0 262 115 690 222 34 108 chr13 38795693 38795964 -80948934 + L1MA9 LINE L1 6039 6289 -2 * 1489 269 191 20 chr13 38795962 38797017 -80947881 - L1M4 LINE L1 -2672 3474 2239 300 288 128 0 chr13 38797279 38797404 -80947494 - L1MC4 LINE L1 -1 8041 7901 193 286 119 12 chr13 38797647 38797731 -80947167 + MER5A DNA MER1_type 54 146 -43 645 306 31 9 chr13 38797764 38797986 -80946912 - MIR SINE MIR -12 250 24 3830 172 87 56 chr13 38797998 38798823 -80946075 - MER21B LTR ERV1 -12 851 1 250 202 167 35 chr13 38799323 38799437 -80945461 + L2 LINE L2 2678 2806 -508 2004 113 0 55 chr13 38799813 38800122 -80944776 - AluSq SINE Alu -21 292 1 21 71 0 0 chr13 38800266 38800308 -80944590 + AT_rich Low_complexity Low_complexity 1 42 0 191 243 0 0 chr13 38800498 38800535 -80944363 - MER5A DNA MER1_type -102 87 51 215 227 0 0 chr13 38800575 38800619 -80944279 + MER5A DNA MER1_type 146 189 0 320 317 116 31 chr13 38801318 38801542 -80943356 - MIR SINE MIR 0 262 20 * 482 271 0 16 chr13 38801531 38801653 -80943245 + L2 LINE L2 3175 3294 -19 441 243 40 35 chr13 38801765 38801991 -80942907 + L1MEc LINE L1 2078 2304 -4092 365 271 57 57 chr13 38802052 38802192 -80942706 - MIR3 SINE MIR -67 141 2 186 339 54 54 chr13 38802263 38802744 -80942154 - L2 LINE L2 -1977 1337 857 458 276 56 56 chr13 38804354 38804550 -80940348 + MLT1J LTR MaLR 3 198 -313 780 259 137 8 chr13 38805837 38806100 -80938798 + MLT1J2 LTR MaLR 117 413 -37 568 293 6 6 chr13 38807137 38807301 -80937597 + MIR SINE MIR 33 196 -66 214 245 57 0 chr13 38808083 38808136 -80936762 + L2 LINE L2 3177 3232 -40 212 152 0 0 chr13 38808210 38808243 -80936655 + L2 LINE L2 3240 3272 0 2365 96 3 0 chr13 38808559 38808861 -80936037 + AluSp SINE Alu 1 303 -10 613 270 52 56 chr13 38809319 38809552 -80935346 - MER102a DNA MER1_type -7 323 92 748 249 138 9 chr13 38812804 38813029 -80931869 - MIR SINE MIR -1 261 8 677 289 80 17 chr13 38813175 38813414 -80931484 + MIR SINE MIR 9 262 0 1050 193 78 21 chr13 38816026 38816066 -80928832 - MLT2B3 LTR ERVL 0 554 518 767 49 37 25 chr13 38816066 38816229 -80928669 + (TA)n Simple_repeat Simple_repeat 1 165 0 198 0 0 0 chr13 38816238 38816260 -80928638 + (GA)n Simple_repeat Simple_repeat 2 23 0 1050 193 78 21 chr13 38816260 38816521 -80928377 - MLT2B3 LTR ERVL -43 511 229 1927 130 19 16 chr13 38816522 38816648 -80928250 + AluSq SINE Alu 1 125 -188 189 0 0 0 chr13 38816648 38816669 -80928229 + (CA)n Simple_repeat Simple_repeat 2 22 0 1927 130 19 16 chr13 38816669 38816850 -80928048 + AluSq SINE Alu 125 309 -4 513 128 29 0 chr13 38816850 38816952 -80927946 + GA-rich Low_complexity Low_complexity 1 105 0 1653 116 39 4 chr13 38816953 38817212 -80927686 - MLT2A2 LTR ERVL -185 268 1 269 247 24 35 chr13 38817262 38817347 -80927551 - L2 LINE L2 -1 3271 3188 1429 183 66 101 chr13 38817554 38817724 -80927174 + MLT1A1 LTR MaLR 1 175 -190 278 26 26 0 chr13 38817724 38817763 -80927135 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1429 183 66 101 chr13 38817763 38817969 -80926929 + MLT1A1 LTR MaLR 175 364 -1 189 74 0 0 chr13 38818337 38818364 -80926534 + (TA)n Simple_repeat Simple_repeat 2 28 0 335 285 162 54 chr13 38818623 38819012 -80925886 + L2 LINE L2 2842 3272 0 613 265 40 20 chr13 38819089 38819289 -80925609 - MIR SINE MIR -17 245 42 1844 87 0 4 chr13 38819386 38819627 -80925271 - AluSc SINE Alu -1 308 69 431 367 65 4 chr13 38820895 38821124 -80923774 + MIR SINE MIR 20 262 0 211 293 173 0 chr13 38821390 38821465 -80923433 + MIR SINE MIR 30 117 -91 279 337 0 12 chr13 38821482 38821568 -80923330 + MIR SINE MIR 11 95 -167 727 259 22 0 chr13 38821583 38821768 -80923130 - MIR SINE MIR -6 256 68 207 333 126 0 chr13 38821885 38821972 -80922926 - L2 LINE L2 -20 3252 3155 224 267 17 0 chr13 38822398 38822458 -80922440 - L2 LINE L2 -2 3311 3251 333 222 8 64 chr13 38822737 38822848 -80922050 + MIR SINE MIR 46 154 -66 231 88 0 0 chr13 38823692 38823726 -80921172 + (TCC)n Simple_repeat Simple_repeat 1 34 0 1660 91 5 0 chr13 38823812 38824022 -80920876 - AluSq SINE Alu -19 294 84 1309 85 17 0 chr13 38824455 38824631 -80920267 + AluSg/x SINE Alu 127 305 -5 182 377 123 0 chr13 38824971 38825125 -80919773 - L3b LINE CR1 -287 1296 1124 193 319 0 0 chr13 38825501 38825548 -80919350 + MIR SINE MIR 29 75 -133 470 298 162 5 chr13 38826450 38826648 -80918250 - L3 LINE CR1 -1 1576 1348 193 290 16 0 chr13 38826871 38826933 -80917965 + L2 LINE L2 2596 2658 -656 998 139 0 6 chr13 38827483 38827514 -80917384 + (GGAA)n Simple_repeat Simple_repeat 1 209 0 998 139 0 6 chr13 38827514 38827694 -80917204 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 225 309 96 0 chr13 38827822 38827916 -80916982 - L3 LINE CR1 -356 1221 1119 204 200 17 50 chr13 38828423 38828483 -80916415 + GA-rich Low_complexity Low_complexity 6 63 0 187 353 78 33 chr13 38828978 38829131 -80915767 - L3 LINE CR1 -1166 411 252 22 35 0 0 chr13 38829673 38829702 -80915196 + AT_rich Low_complexity Low_complexity 1 29 0 229 330 68 17 chr13 38829702 38829820 -80915078 - MIR SINE MIR -104 158 35 2006 243 36 4 chr13 38831210 38831709 -80913189 + L1ME1 LINE L1 5647 6161 -5 2416 76 0 3 chr13 38831793 38832094 -80912804 + AluY SINE Alu 1 300 -11 186 43 0 0 chr13 38832671 38832694 -80912204 + (TGG)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr13 38832804 38832827 -80912071 + AT_rich Low_complexity Low_complexity 1 23 0 217 318 62 23 chr13 38834811 38834940 -80909958 - L2 LINE L2 0 3313 3180 439 202 56 22 chr13 38836138 38836227 -80908671 - MER81 DNA DNA -21 93 2 813 226 24 0 chr13 38836548 38836712 -80908186 + MER5A DNA MER1_type 21 188 -1 2772 26 3 0 chr13 38836823 38837133 -80907765 - AluY SINE Alu 0 311 1 215 321 48 0 chr13 38838767 38838851 -80906047 - L2 LINE L2 0 3272 3185 938 196 88 0 chr13 38838880 38839074 -80905824 - MIR SINE MIR -49 213 3 2327 111 0 0 chr13 38840450 38840757 -80904141 - AluSx SINE Alu -5 307 1 1395 189 33 49 chr13 38840964 38841270 -80903628 - AluJo SINE Alu -6 306 6 541 331 116 52 chr13 38842002 38842666 -80902232 + L2 LINE L2 1610 2371 -943 1953 131 0 4 chr13 38842666 38842964 -80901934 - AluSx SINE Alu 0 307 11 541 331 116 52 chr13 38842964 38843366 -80901532 + L2 LINE L2 2371 2746 -568 216 97 0 0 chr13 38843472 38843503 -80901395 + (CAT)n Simple_repeat Simple_repeat 3 33 0 501 273 52 6 chr13 38843508 38843680 -80901218 - MIR SINE MIR -10 252 73 648 320 40 0 chr13 38845132 38845360 -80899538 - MIR SINE MIR 0 262 26 2213 108 3 7 chr13 38845437 38845765 -80899133 - AluSq SINE Alu 0 313 1 686 270 25 0 chr13 38845768 38845964 -80898934 - MIR SINE MIR -49 213 13 510 326 38 13 chr13 38846908 38847144 -80897754 + MIR SINE MIR 21 262 0 296 327 0 0 chr13 38848539 38848640 -80896258 - MIR SINE MIR -130 132 32 262 320 0 19 chr13 38849500 38849603 -80895295 - MIR SINE MIR -130 132 32 1219 242 81 73 chr13 38849851 38850343 -80894555 + MER21B LTR ERV1 100 595 -268 710 61 0 10 chr13 38851037 38851135 -80893763 + L1PB1 LINE L1 6054 6150 -1 27 49 0 0 chr13 38851135 38851176 -80893722 + AT_rich Low_complexity Low_complexity 1 41 0 2005 133 3 11 chr13 38851177 38851494 -80893404 - AluSx SINE Alu 0 315 1 190 241 0 19 chr13 38853944 38853998 -80890900 - MER5B DNA MER1_type -124 54 2 252 0 0 0 chr13 38854018 38854046 -80890852 + (CA)n Simple_repeat Simple_repeat 2 29 0 246 309 100 0 chr13 38854156 38854266 -80890632 + MIR3 SINE MIR 64 184 -24 537 295 62 48 chr13 38855927 38856263 -80888635 - MER102b DNA MER1_type 0 341 1 1034 99 35 0 chr13 38858037 38858178 -80886720 - AluSp/q SINE Alu -7 306 161 841 156 96 0 chr13 38858652 38858819 -80886079 - MER5A DNA MER1_type -1 188 6 21 36 0 0 chr13 38859165 38859193 -80885705 + AT_rich Low_complexity Low_complexity 1 28 0 465 244 51 21 chr13 38859527 38859717 -80885181 + MIR SINE MIR 25 218 -44 256 269 11 75 chr13 38862540 38862633 -80882265 + MER5A DNA MER1_type 87 173 -16 327 293 41 0 chr13 38863587 38863710 -80881188 - L2 LINE L2 -6 3307 3180 243 283 0 0 chr13 38864028 38864081 -80880817 - L2 LINE L2 -680 2634 2582 312 309 146 28 chr13 38865335 38865513 -80879385 + MIR3 SINE MIR 3 201 -7 354 311 82 20 chr13 38867015 38867211 -80877687 + L2 LINE L2 3075 3282 -31 1569 192 0 21 chr13 38868590 38868876 -80876022 + AluJb SINE Alu 3 282 -30 24 0 0 0 chr13 38868885 38868909 -80875989 + AT_rich Low_complexity Low_complexity 1 24 0 1766 217 125 53 chr13 38870476 38870988 -80873910 - MLT1H LTR MaLR 0 549 1 362 202 48 0 chr13 38873009 38873093 -80871805 - Charlie8 DNA MER1_type -2259 158 71 269 276 41 41 chr13 38873587 38873710 -80871188 - MIR3 SINE MIR -54 154 32 456 311 144 0 chr13 38873964 38874144 -80870754 - MIR SINE MIR -29 233 28 333 228 138 83 chr13 38875979 38876124 -80868774 + MER5A DNA MER1_type 37 189 0 2012 154 0 10 chr13 38876575 38876880 -80868018 - AluJb SINE Alu 0 312 11 549 255 50 6 chr13 38877058 38877219 -80867679 + MER5B DNA MER1_type 9 176 -2 870 183 5 42 chr13 38877973 38878164 -80866734 + MER5A DNA MER1_type 5 188 -1 190 259 69 17 chr13 38878782 38878840 -80866058 - MIR SINE MIR -127 81 21 4331 108 21 3 chr13 38879812 38880435 -80864463 - MER51A LTR ERV1 0 634 1 453 270 36 0 chr13 38880860 38880997 -80863901 - MIR SINE MIR 0 262 121 26 0 0 0 chr13 38882062 38882088 -80862810 + AT_rich Low_complexity Low_complexity 1 26 0 1701 162 30 18 chr13 38882218 38882552 -80862346 - L1MB8 LINE L1 -1 6177 5840 28 0 0 0 chr13 38882635 38882663 -80862235 + AT_rich Low_complexity Low_complexity 1 28 0 193 284 241 12 chr13 38882665 38882827 -80862071 - MIR SINE MIR -32 230 32 608 226 77 52 chr13 38883041 38883289 -80861609 + MIR SINE MIR 9 262 0 2457 90 0 3 chr13 38883652 38883963 -80860935 + AluSg SINE Alu 1 310 0 271 331 52 15 chr13 38884329 38884465 -80860433 + L1ME LINE L1 5684 5824 -297 2233 114 58 73 chr13 38885023 38885436 -80859462 - MLT2D LTR ERVL -6 408 2 495 288 118 26 chr13 38885443 38885749 -80859149 - MER93a LTR ERV1 -11 391 58 790 261 38 93 chr13 38885846 38886137 -80858761 - MLT1E LTR MaLR -88 505 231 2004 128 24 0 chr13 38886449 38886738 -80858160 - AluSx SINE Alu -16 296 1 2119 156 30 0 chr13 38886846 38887180 -80857718 + MSTB LTR MaLR 1 344 -82 330 338 105 18 chr13 38887725 38888059 -80856839 + L2 LINE L2 2920 3282 -31 249 33 0 0 chr13 38888066 38888096 -80856802 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 237 255 32 11 chr13 38888792 38888886 -80856012 + L2 LINE L2 2934 3029 -243 224 283 44 62 chr13 38889852 38889965 -80854933 + MIR SINE MIR 46 156 -106 270 170 19 0 chr13 38891170 38891223 -80853675 + MER116 DNA Mariner 22 75 -5 254 239 43 33 chr13 38891896 38891988 -80852910 - L3 LINE CR1 -62 1515 1423 489 297 29 42 chr13 38892045 38892284 -80852614 + MIR SINE MIR 15 250 -12 268 247 118 12 chr13 38892318 38892403 -80852495 - L3 LINE CR1 -255 1322 1229 2665 30 0 0 chr13 38892841 38893138 -80851760 + AluY SINE Alu 1 297 -14 745 256 256 10 chr13 38893988 38894220 -80850678 + L2 LINE L2 2805 2979 -334 180 0 0 0 chr13 38894220 38894240 -80850658 + (TC)n Simple_repeat Simple_repeat 1 20 0 745 256 256 10 chr13 38894240 38894414 -80850484 + L2 LINE L2 2979 3311 -2 275 244 39 0 chr13 38895097 38895175 -80849723 + GA-rich Low_complexity Low_complexity 1 81 0 566 322 10 5 chr13 38895283 38895491 -80849407 + MIR SINE MIR 30 238 -24 221 180 20 0 chr13 38895494 38895544 -80849354 + (CAT)n Simple_repeat Simple_repeat 1 51 0 197 293 67 0 chr13 38895554 38895629 -80849269 - MIR SINE MIR -42 220 141 198 260 20 0 chr13 38895879 38895929 -80848969 + MIR SINE MIR 21 71 -137 498 276 10 36 chr13 38896629 38896825 -80848073 + MIR SINE MIR 44 234 -28 632 297 4 48 chr13 38898784 38899033 -80845865 + MIR SINE MIR 15 252 -10 1660 59 0 18 chr13 38899038 38899257 -80845641 + L1PA8 LINE L1 5957 6171 -1 2351 105 0 7 chr13 38901814 38902119 -80842779 - AluSx SINE Alu -9 303 1 404 226 135 30 chr13 38902667 38902800 -80842098 - MLT1K LTR MaLR -254 334 188 1817 245 89 35 chr13 38902818 38903357 -80841541 - MLT1E2 LTR MaLR -8 618 51 262 339 87 0 chr13 38904017 38904144 -80840754 + MIR3 SINE MIR 20 157 -51 1188 289 51 12 chr13 38904717 38905126 -80839772 - LTR16A LTR ERVL 0 450 26 1986 161 70 21 chr13 38905472 38905844 -80839054 - MLT1B LTR MaLR 0 390 1 189 0 0 0 chr13 38905956 38905977 -80838921 + (T)n Simple_repeat Simple_repeat 1 21 0 501 110 0 128 chr13 38906017 38906126 -80838772 - L1PA10 LINE L1 0 6168 6074 250 209 108 39 chr13 38906147 38906276 -80838622 - L1ME4a LINE L1 -40 6081 5944 218 57 57 0 chr13 38906737 38906772 -80838126 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 314 183 0 12 chr13 38907521 38907603 -80837295 + GA-rich Low_complexity Low_complexity 4 84 0 227 229 0 16 chr13 38907604 38907665 -80837233 - LTR66 LTR ERVL -152 458 399 608 186 87 0 chr13 38908471 38908632 -80836266 + MER96B DNA MER1_type? 1 175 -242 581 138 0 0 chr13 38908773 38908867 -80836031 + L1MA8 LINE L1 6186 6279 -12 2258 237 78 95 chr13 38910305 38910895 -80834003 - MLT1G LTR MaLR -15 575 1 2198 108 3 10 chr13 38911555 38911852 -80833046 + AluSx SINE Alu 1 295 -17 697 275 90 9 chr13 38912136 38912369 -80832529 - MIR SINE MIR -5 257 6 711 163 188 6 chr13 38912824 38912984 -80831914 - MER53 DNA DNA 0 189 1 313 176 15 0 chr13 38913253 38913321 -80831577 - L1MC4 LINE L1 0 8042 7974 699 257 40 14 chr13 38913524 38913746 -80831152 - L1MC4 LINE L1 -203 7839 7612 571 309 100 0 chr13 38913765 38913985 -80830913 - MIR SINE MIR -20 242 1 205 339 104 42 chr13 38914166 38914358 -80830540 + MIR SINE MIR 47 250 -12 1772 197 67 6 chr13 38914769 38915125 -80829773 + MLT1B LTR MaLR 1 378 -12 1543 99 49 0 chr13 38915178 38915356 -80829542 + MLT2A2 LTR ERVL 220 413 -40 333 0 0 0 chr13 38915356 38915393 -80829505 + (TG)n Simple_repeat Simple_repeat 2 38 0 1543 99 49 0 chr13 38915393 38915437 -80829461 + MLT2A2 LTR ERVL 413 453 0 2135 128 0 0 chr13 38917055 38917345 -80827553 - AluSx SINE Alu -15 297 8 492 157 22 11 chr13 38919303 38919392 -80825506 - MER46A DNA MER2_type -97 139 50 320 323 60 42 chr13 38920125 38920342 -80824556 - MIR SINE MIR -24 238 18 287 296 40 59 chr13 38920390 38920542 -80824356 + MIR SINE MIR 39 187 -75 856 201 0 19 chr13 38920597 38920756 -80824142 - FRAM SINE Alu -7 159 4 528 251 113 88 chr13 38920886 38921329 -80823569 - MLT1L LTR MaLR 0 615 162 293 194 30 15 chr13 38921367 38921434 -80823464 - MLT1L LTR MaLR -543 72 5 261 282 73 16 chr13 38923001 38923125 -80821773 - MIR SINE MIR -46 216 86 1247 144 8 58 chr13 38924247 38924490 -80820408 - L1PA13 LINE L1 -7 6156 5926 258 252 189 0 chr13 38927727 38927838 -80817060 + L2 LINE L2 3182 3313 0 288 0 0 0 chr13 38928533 38928565 -80816333 + (TC)n Simple_repeat Simple_repeat 1 32 0 257 233 128 0 chr13 38928767 38928853 -80816045 + MER5A DNA MER1_type 10 106 -83 2242 116 0 10 chr13 38928947 38929258 -80815640 + AluSg SINE Alu 1 308 -2 359 275 38 33 chr13 38929626 38929836 -80815062 + MIR SINE MIR 17 232 -30 821 141 59 82 chr13 38930188 38930408 -80814490 + MER20 DNA MER1_type 1 215 -4 359 297 97 11 chr13 38930890 38931065 -80813833 + MLT1L LTR MaLR 368 557 -58 2027 97 0 4 chr13 38931251 38931508 -80813390 - AluSq SINE Alu -26 287 32 403 257 26 9 chr13 38932742 38932855 -80812043 + MIR SINE MIR 81 195 -67 516 271 103 23 chr13 38932873 38933087 -80811811 + MIR SINE MIR 2 232 -30 204 217 0 0 chr13 38933118 38933164 -80811734 + MIR SINE MIR 215 260 -2 1519 237 22 16 chr13 38933320 38933683 -80811215 - MLT1A2 LTR MaLR -5 369 5 22 0 0 0 chr13 38934879 38934901 -80809997 + AT_rich Low_complexity Low_complexity 1 22 0 330 328 8 22 chr13 38935988 38936122 -80808776 - MER5A DNA MER1_type 0 189 58 222 285 60 53 chr13 38936008 38936159 -80808739 + MER5A DNA MER1_type 31 182 -7 * 222 339 100 83 chr13 38936389 38936728 -80808170 - L2 LINE L2 -50 3222 2878 2014 163 12 15 chr13 38936759 38937102 -80807796 - MLT1A1 LTR MaLR 0 365 24 377 240 11 33 chr13 38938228 38938411 -80806487 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 237 236 0 0 chr13 38938443 38938498 -80806400 - MIR SINE MIR -112 150 96 934 244 40 4 chr13 38938930 38939180 -80805718 - MIR SINE MIR 0 262 4 180 0 0 0 chr13 38941719 38941739 -80803159 + (TTG)n Simple_repeat Simple_repeat 2 21 0 234 270 52 43 chr13 38942164 38942279 -80802619 - MIR3 SINE MIR -29 179 64 183 80 0 0 chr13 38942338 38942363 -80802535 + (CCCCCA)n Simple_repeat Simple_repeat 3 27 0 420 335 36 0 chr13 38946380 38946547 -80798351 + L3b LINE CR1 1264 1436 -147 222 167 24 0 chr13 38947690 38947732 -80797166 + (TA)n Simple_repeat Simple_repeat 1 43 0 1142 182 36 9 chr13 38949905 38950130 -80794768 + L1MC1 LINE L1 6101 6331 -2 1675 231 164 25 chr13 38950420 38950970 -80793928 - MLT1E2 LTR MaLR 0 626 1 192 255 189 20 chr13 38950970 38951123 -80793775 + L2 LINE L2 1828 2006 -1308 2172 117 3 0 chr13 38951440 38951738 -80793160 + AluSq SINE Alu 2 300 -13 1846 163 3 16 chr13 38952000 38952306 -80792592 + AluJo SINE Alu 1 302 -10 520 139 0 0 chr13 38952446 38952532 -80792366 + MER5A DNA MER1_type 20 105 -84 228 356 130 18 chr13 38952755 38953039 -80791859 + L2 LINE L2 2910 3225 -47 320 250 36 0 chr13 38953694 38953778 -80791120 + MIR SINE MIR 120 206 -56 2286 119 0 0 chr13 38954157 38954469 -80790429 - AluSx SINE Alu 0 312 1 2179 179 39 10 chr13 38955604 38956018 -80788880 + MSTB LTR MaLR 1 426 0 285 289 26 50 chr13 38956231 38956355 -80788543 - MIR SINE MIR -67 141 46 293 274 18 44 chr13 38956461 38956598 -80788300 - LTR33A LTR ERVL -2 521 411 241 311 48 0 chr13 38956856 38956959 -80787939 - LTR67 LTR ERVL -336 221 114 309 26 0 0 chr13 38957645 38957683 -80787215 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr13 38957692 38957730 -80787168 + AT_rich Low_complexity Low_complexity 1 38 0 531 353 92 11 chr13 38957756 38958104 -80786794 + L3 LINE CR1 1068 1443 -134 201 39 0 0 chr13 38959001 38959027 -80785871 + (TG)n Simple_repeat Simple_repeat 1 26 0 180 258 135 0 chr13 38960419 38960508 -80784390 + MIR SINE MIR 162 262 0 338 288 42 42 chr13 38960606 38960724 -80784174 + L2 LINE L2 3137 3254 -18 223 265 29 20 chr13 38960916 38961018 -80783880 + MER5A DNA MER1_type 85 187 -2 2513 77 0 0 chr13 38962443 38962754 -80782144 + AluY SINE Alu 1 311 0 273 186 246 36 chr13 38962971 38963138 -80781760 + L2 LINE L2 3107 3308 -5 1028 152 25 0 chr13 38964076 38964234 -80780664 - AluSg/x SINE Alu -15 297 136 2424 149 39 12 chr13 38964272 38964681 -80780217 - MSTB LTR MaLR 0 426 7 207 0 0 0 chr13 38964762 38964785 -80780113 + (CAA)n Simple_repeat Simple_repeat 2 24 0 218 236 56 0 chr13 38965065 38965137 -80779761 - L2 LINE L2 -215 3057 2982 201 286 51 41 chr13 38965152 38965250 -80779648 - L2 LINE L2 -49 3264 3166 194 333 106 8 chr13 38965989 38966112 -80778786 + L2 LINE L2 2681 2815 -499 512 249 30 6 chr13 38966157 38966322 -80778576 - L1M4 LINE L1 -775 5371 5203 329 306 171 14 chr13 38966868 38967084 -80777814 + MIR SINE MIR 13 262 0 522 173 0 0 chr13 38967299 38967403 -80777495 + (TCCA)n Simple_repeat Simple_repeat 2 105 0 317 250 54 45 chr13 38967403 38967515 -80777383 - L2 LINE L2 0 3272 3160 260 367 120 6 chr13 38967609 38967767 -80777131 + MIR3 SINE MIR 20 195 -13 267 291 53 76 chr13 38968468 38968770 -80776128 + L2 LINE L2 2943 3237 -35 523 296 23 6 chr13 38968798 38968970 -80775928 - MIR SINE MIR 0 262 88 368 206 0 0 chr13 38969148 38969216 -80775682 - AluJo SINE Alu -7 295 228 553 179 9 28 chr13 38969216 38969322 -80775576 - AluJo SINE Alu -160 152 49 180 135 0 0 chr13 38970308 38970345 -80774553 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 2172 181 21 65 chr13 38970418 38970944 -80773954 - MLT1D LTR MaLR -2 503 1 1414 245 52 46 chr13 38971502 38972004 -80772894 + MLT1D LTR MaLR 1 505 0 354 212 0 0 chr13 38972392 38972491 -80772407 + (CA)n Simple_repeat Simple_repeat 1 99 0 189 270 0 0 chr13 38972900 38972937 -80771961 - L2 LINE L2 -34 3279 3243 520 216 60 0 chr13 38973302 38973418 -80771480 - L1PB4 LINE L1 0 6156 6034 1279 301 93 21 chr13 38973423 38974240 -80770658 - L2 LINE L2 -1064 2250 1375 411 288 76 83 chr13 38974513 38974933 -80769965 + L1MEd LINE L1 176 592 -5613 337 289 79 5 chr13 38974986 38975040 -80769858 + L1MEd LINE L1 723 772 -5433 204 40 0 0 chr13 38975040 38975065 -80769833 + (CAGAGA)n Simple_repeat Simple_repeat 6 30 0 337 289 79 5 chr13 38975065 38975200 -80769698 + L1MEd LINE L1 772 926 -5279 731 87 0 39 chr13 38975218 38975322 -80769576 + HY3 scRNA scRNA 1 100 -1 504 145 111 26 chr13 38975364 38975481 -80769417 + L1MB1 LINE L1 6042 6168 0 * 570 259 62 69 chr13 38975478 38975654 -80769244 + L1MEd LINE L1 935 1111 -5094 2178 113 3 0 chr13 38975654 38975959 -80768939 + AluSx SINE Alu 1 306 0 570 259 62 69 chr13 38975959 38976186 -80768712 + L1MEd LINE L1 1111 1336 -4869 443 285 79 18 chr13 38976323 38976551 -80768347 + L1MEd LINE L1 1573 1814 -4582 206 337 214 0 chr13 38977491 38977589 -80767309 - L2 LINE L2 0 3272 3154 294 340 92 76 chr13 38977600 38977982 -80766916 - L2 LINE L2 -48 3224 2837 22 0 0 0 chr13 38978105 38978127 -80766771 + AT_rich Low_complexity Low_complexity 1 22 0 402 350 79 46 chr13 38978158 38978549 -80766349 - L2 LINE L2 -649 2665 2262 297 287 124 16 chr13 38980004 38980133 -80764765 + MIR3 SINE MIR 20 162 -46 702 204 45 17 chr13 38980142 38980318 -80764580 + Charlie8 DNA MER1_type 57 237 -2180 1102 180 24 33 chr13 38980407 38980618 -80764280 - MER3 DNA MER1_type 0 209 1 405 301 22 22 chr13 38981516 38981652 -80763246 + MER5B DNA MER1_type 43 178 0 2289 76 38 3 chr13 38982984 38983275 -80761623 - AluY SINE Alu -10 301 1 189 314 124 46 chr13 38983467 38983620 -80761278 - MER5A DNA MER1_type -3 186 22 429 183 11 32 chr13 38983735 38983828 -80761070 - MER5A DNA MER1_type -90 99 9 484 274 97 6 chr13 38983914 38984089 -80760809 + MIR SINE MIR 2 192 -70 378 0 0 0 chr13 38984299 38984341 -80760557 + (TG)n Simple_repeat Simple_repeat 2 43 0 902 38 0 0 chr13 38985450 38985555 -80759343 - L1PA8 LINE L1 -2 6170 6066 388 327 49 12 chr13 38985849 38986011 -80758887 + MER5B DNA MER1_type 5 172 -6 * 486 340 6 19 chr13 38985999 38986158 -80758740 - MIR3 SINE MIR -32 176 20 460 248 38 124 chr13 38986291 38986501 -80758397 + MIR SINE MIR 56 247 -15 638 229 157 0 chr13 38987157 38987310 -80757588 + MER5A DNA MER1_type 13 189 0 280 294 29 0 chr13 38987627 38987729 -80757169 - L1MC4 LINE L1 -1324 6718 6614 2300 185 32 31 chr13 38987731 38988223 -80756675 - MLT2B1 LTR ERVL -20 472 1 510 267 175 52 chr13 38988237 38988893 -80756005 + L2 LINE L2 2564 3273 -40 326 261 0 0 chr13 38990300 38990365 -80754533 + MER69 DNA AcHobo 1 65 -2461 676 182 49 28 chr13 38990514 38990657 -80754241 + MER69 DNA AcHobo 2380 2525 -1 371 184 208 48 chr13 38991463 38991588 -80753310 - L2 LINE L2 0 3313 3169 461 259 93 51 chr13 38992961 38993177 -80751721 - L2 LINE L2 -123 3190 2966 315 277 0 0 chr13 38993486 38993551 -80751347 + MER69 DNA AcHobo 1 65 -2461 2617 267 106 12 chr13 38993561 38994446 -80750452 - L2 LINE L2 -363 2951 1984 298 268 52 0 chr13 38994447 38994544 -80750354 - L2 LINE L2 -2383 931 830 227 179 221 63 chr13 38994545 38994640 -80750258 - Charlie2 DNA MER1_type -2718 144 35 439 254 164 5 chr13 38994736 38994925 -80749973 + L2 LINE L2 1319 1537 -1777 460 244 64 19 chr13 38994929 38995085 -80749813 + L1MC4 LINE L1 7879 8041 -1 1172 210 178 25 chr13 38995121 38995421 -80749477 + Charlie2 DNA MER1_type 2249 2502 -360 2243 60 63 0 chr13 38995421 38995705 -80749193 - AluY SINE Alu -9 302 1 1172 210 178 25 chr13 38995705 38995933 -80748965 + Charlie2 DNA MER1_type 2502 2858 -4 1213 297 79 2 chr13 38995968 38996386 -80748512 - L2 LINE L2 -2031 1283 834 1495 220 133 21 chr13 38996386 38996968 -80747930 + MLT1E3 LTR MaLR 1 597 -27 1911 273 88 26 chr13 38996984 38997714 -80747184 - L2 LINE L2 -2492 822 48 1971 185 83 37 chr13 38997994 38998427 -80746471 - MSTB2 LTR MaLR 0 457 5 24 0 0 0 chr13 38999205 38999229 -80745669 + AT_rich Low_complexity Low_complexity 1 24 0 376 349 94 10 chr13 38999729 38999921 -80744977 - MIR SINE MIR -21 241 34 1251 168 15 58 chr13 39000390 39000664 -80744234 + AluJo SINE Alu 48 309 -3 650 254 128 89 chr13 39001685 39002248 -80742650 + MER45C DNA AcHobo 4 633 -320 354 127 0 0 chr13 39002243 39002298 -80742600 + MER45C DNA AcHobo 899 953 0 * 222 320 26 0 chr13 39002328 39002406 -80742492 - L3 LINE CR1 -763 814 735 440 299 69 10 chr13 39002753 39002957 -80741941 - MER67D LTR ERV1 -3 511 296 * 1806 201 37 16 chr13 39002955 39003338 -80741560 - MER67B LTR ERV1 -270 391 1 451 335 65 39 chr13 39004280 39004590 -80740308 + L3 LINE CR1 687 1004 -573 1483 208 68 42 chr13 39005451 39005875 -80739023 - L1ME1 LINE L1 -4 6162 5728 1853 185 46 48 chr13 39005895 39006355 -80738543 + MLT1C LTR MaLR 1 459 -8 1494 202 105 8 chr13 39006361 39007241 -80737657 - L1ME1 LINE L1 -470 5696 4680 180 301 89 96 chr13 39007879 39008025 -80736873 - L2 LINE L2 -5 3267 3123 786 229 62 110 chr13 39009119 39009538 -80735360 - MLT1J LTR MaLR -3 508 110 230 236 36 0 chr13 39009497 39009552 -80735346 - LTR67 LTR ERVL -401 156 100 * 582 15 0 0 chr13 39010474 39010541 -80734357 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 295 152 15 15 chr13 39010541 39010607 -80734291 + GA-rich Low_complexity Low_complexity 2 67 0 518 269 73 18 chr13 39011348 39011395 -80733503 + MIR SINE MIR 10 53 -209 2026 130 10 17 chr13 39011395 39011695 -80733203 + AluSx SINE Alu 1 298 -14 518 269 73 18 chr13 39011695 39011882 -80733016 + MIR SINE MIR 53 250 -12 1191 158 79 0 chr13 39012162 39012364 -80732534 + MER58A DNA MER1_type 1 218 -6 255 311 119 37 chr13 39012983 39013227 -80731671 - L2 LINE L2 -653 2661 2398 1200 107 40 0 chr13 39013272 39013449 -80731449 - L1MB2 LINE L1 -3 6168 5985 254 314 57 19 chr13 39013572 39013677 -80731221 - L2 LINE L2 0 3272 3164 1786 235 21 41 chr13 39014272 39014740 -80730158 + MER20B DNA MER1_type 33 491 -292 597 157 0 0 chr13 39014900 39014989 -80729909 + AluSg/x SINE Alu 208 296 -16 240 203 43 29 chr13 39014997 39015066 -80729832 + MIR SINE MIR 57 126 -136 408 154 108 15 chr13 39015296 39015426 -80729472 + MER20B DNA MER1_type 568 709 -74 244 288 15 0 chr13 39015427 39015493 -80729405 - MIR SINE MIR -75 133 67 353 350 126 37 chr13 39015564 39015993 -80728905 - L2 LINE L2 -2 3270 2804 193 318 84 58 chr13 39016125 39016433 -80728465 - L2 LINE L2 -694 2620 2305 323 273 230 7 chr13 39016513 39016652 -80728246 - MIR SINE MIR -70 192 23 1012 181 0 0 chr13 39018524 39018695 -80726203 - FRAM SINE Alu -7 169 1 196 326 101 11 chr13 39019174 39019263 -80725635 - L2 LINE L2 -25 3288 3192 432 258 198 22 chr13 39019550 39019732 -80725166 - MIR SINE MIR -18 244 31 1750 185 0 13 chr13 39021414 39021716 -80723182 + AluJo SINE Alu 1 298 -14 399 285 107 69 chr13 39022671 39022990 -80721908 - L2 LINE L2 0 3272 2942 355 310 53 103 chr13 39023738 39024206 -80720692 + L2 LINE L2 2824 3268 -4 265 238 129 0 chr13 39024824 39024925 -80719973 - MER103 DNA DNA -2 164 51 258 32 0 0 chr13 39025048 39025079 -80719819 + (CA)n Simple_repeat Simple_repeat 2 32 0 214 158 0 0 chr13 39025468 39025506 -80719392 + CT-rich Low_complexity Low_complexity 1 38 0 193 29 59 0 chr13 39026529 39026563 -80718335 + (TA)n Simple_repeat Simple_repeat 2 37 0 1721 65 32 9 chr13 39027073 39027324 -80717574 + L1PA11 LINE L1 5940 6195 0 2213 129 0 0 chr13 39027406 39027715 -80717183 + AluSx SINE Alu 3 311 -1 213 297 30 69 chr13 39027995 39028096 -80716802 + MIR SINE MIR 15 111 -151 770 198 111 0 chr13 39028514 39028686 -80716212 + MIR SINE MIR 7 197 -65 530 317 6 28 chr13 39028684 39028864 -80716034 - MIR SINE MIR -73 189 14 * 228 271 0 0 chr13 39029153 39029201 -80715697 + polypurine Low_complexity Low_complexity 3 50 0 238 290 62 92 chr13 39029285 39029557 -80715341 - L2 LINE L2 -1491 1823 1560 588 65 0 0 chr13 39029593 39029670 -80715228 + (GGATG)n Simple_repeat Simple_repeat 5 81 0 249 33 0 0 chr13 39029670 39029700 -80715198 - MLT2A1 LTR ERVL 0 444 415 9475 70 6 1 chr13 39029701 39030877 -80714021 - HERVL-A1 LTR ERVL -4472 1182 1 3177 69 72 19 chr13 39030877 39030923 -80713975 - MLT2A1 LTR ERVL 0 444 402 441 97 0 0 chr13 39030923 39030995 -80713903 + (TA)n Simple_repeat Simple_repeat 2 73 0 3177 69 72 19 chr13 39030995 39031366 -80713532 - MLT2A1 LTR ERVL -42 402 5 306 212 15 15 chr13 39031419 39031485 -80713413 - MER112 DNA MER1_type -186 74 9 232 230 0 54 chr13 39031655 39031729 -80713169 - L2 LINE L2 -1 3312 3243 2017 124 7 7 chr13 39032574 39032886 -80712012 - AluSq SINE Alu 0 313 1 211 262 33 0 chr13 39032886 39032947 -80711951 - MIR3 SINE MIR -54 154 92 197 278 134 12 chr13 39033894 39033999 -80710899 - MIR SINE MIR -62 146 27 242 309 203 0 chr13 39035311 39035434 -80709464 + MIR SINE MIR 16 163 -99 341 204 9 3 chr13 39037045 39037182 -80707716 + MER96B DNA MER1_type? 1 176 -241 201 121 30 15 chr13 39037408 39037474 -80707424 + (TTTA)n Simple_repeat Simple_repeat 4 70 0 21 82 0 0 chr13 39037480 39037529 -80707369 + AT_rich Low_complexity Low_complexity 1 49 0 2375 97 0 0 chr13 39037531 39037829 -80707069 + AluSx SINE Alu 1 298 -14 25 31 0 0 chr13 39037846 39037878 -80707020 + AT_rich Low_complexity Low_complexity 1 32 0 251 143 24 0 chr13 39037895 39037937 -80706961 + MER96B DNA MER1_type? 190 232 -185 1655 174 36 44 chr13 39038173 39038307 -80706591 + MLT1A1 LTR MaLR 2 136 -229 2579 125 80 10 chr13 39038307 39038707 -80706191 - MSTA LTR MaLR 0 428 1 1655 174 36 44 chr13 39038707 39038935 -80705963 + MLT1A1 LTR MaLR 136 361 -4 219 204 0 0 chr13 39038954 39039003 -80705895 + (TG)n Simple_repeat Simple_repeat 2 50 0 1843 114 4 46 chr13 39040046 39040327 -80704571 - AluSx SINE Alu -17 295 27 474 357 43 4 chr13 39040490 39040725 -80704173 - MIR SINE MIR 0 262 19 429 272 24 0 chr13 39041540 39041665 -80703233 - MER94 DNA DNA -5 129 2 304 215 108 39 chr13 39043245 39043375 -80701523 - MLT1H LTR MaLR -375 174 36 280 280 0 0 chr13 39043394 39043469 -80701429 - L1P4 LINE L1 -361 5805 5731 274 252 54 68 chr13 39043504 39043651 -80701247 - MIR SINE MIR -70 192 48 3296 160 60 88 chr13 39044437 39045185 -80699713 - LTR8A LTR ERV1 0 727 1 2105 251 50 44 chr13 39045185 39045842 -80699056 - HUERS-P1 LTR ERV1 0 6263 5603 4929 145 88 42 chr13 39045852 39045906 -80698992 - HUERS-P1 LTR ERV1 -2862 5258 5208 2311 98 0 7 chr13 39045906 39046202 -80698696 + AluSq SINE Alu 1 294 -19 4929 145 88 42 chr13 39046202 39047198 -80697700 - HUERS-P1 LTR ERV1 -2912 5208 2326 189 107 0 0 chr13 39047205 39047233 -80697665 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3743 91 12 4 chr13 39047233 39047719 -80697179 - L1PB1 LINE L1 -6 6145 5656 5163 121 16 5 chr13 39047727 39050165 -80694733 - L1PBa LINE L1 -2988 3874 1360 4668 158 20 28 chr13 39050167 39050254 -80694644 - HUERS-P1 LTR ERV1 -1786 3575 3489 2108 143 0 0 chr13 39050254 39050555 -80694343 - AluSx SINE Alu -11 301 1 4668 158 20 28 chr13 39050555 39051486 -80693412 - HUERS-P1 LTR ERV1 -1872 3489 1843 237 184 20 0 chr13 39051535 39051584 -80693314 - MER34C LTR ERV1 -366 219 170 3233 212 71 79 chr13 39051585 39052539 -80692359 - HUERS-P1 LTR ERV1 -3083 1797 836 2150 137 0 0 chr13 39052539 39052838 -80692060 + AluSx SINE Alu 1 299 -13 3233 212 71 79 chr13 39052838 39053440 -80691458 - HUERS-P1 LTR ERV1 -4044 836 941 225 0 0 0 chr13 39053440 39053465 -80691433 + (TTA)n Simple_repeat Simple_repeat 1 25 0 3233 212 71 79 chr13 39053465 39053639 -80691259 - HUERS-P1 LTR ERV1 -3938 942 768 * 4620 182 81 45 chr13 39053626 39054877 -80690021 - HUERS-P1 LTR ERV1 -4648 1615 364 606 321 5 27 chr13 39054961 39055185 -80689713 - HUERS-P1 LTR ERV1 -6044 219 1 3098 167 93 66 chr13 39055185 39055893 -80689005 - LTR8A LTR ERV1 0 727 1 272 301 26 53 chr13 39057383 39057496 -80687402 + MIR SINE MIR 37 146 -62 26 0 0 0 chr13 39059041 39059067 -80685831 + AT_rich Low_complexity Low_complexity 1 26 0 861 150 0 0 chr13 39059067 39059200 -80685698 - L1MA8 LINE L1 -5 6286 6154 651 281 51 41 chr13 39059206 39059598 -80685300 + L1ME4a LINE L1 5706 6101 -20 503 220 170 65 chr13 39059781 39059981 -80684917 + MIR SINE MIR 39 259 -3 228 67 0 0 chr13 39060546 39060576 -80684322 + (A)n Simple_repeat Simple_repeat 1 30 0 726 213 72 23 chr13 39060855 39061076 -80683822 - MIR SINE MIR -30 232 1 243 0 0 0 chr13 39061091 39061118 -80683780 + (TG)n Simple_repeat Simple_repeat 1 27 0 405 0 0 0 chr13 39061356 39061401 -80683497 + (TG)n Simple_repeat Simple_repeat 1 45 0 1745 209 71 23 chr13 39061454 39061847 -80683051 + MLT2D LTR ERVL 3 414 0 243 0 0 0 chr13 39062260 39062287 -80682611 + (A)n Simple_repeat Simple_repeat 1 27 0 439 232 36 51 chr13 39063258 39063396 -80681502 + L2 LINE L2 3154 3289 -24 309 212 40 61 chr13 39063497 39063596 -80681302 + MIR SINE MIR 21 117 -91 621 317 60 0 chr13 39064309 39064508 -80680390 - MIR SINE MIR -36 226 16 235 314 142 58 chr13 39064640 39065245 -80679653 + L2 LINE L2 1656 2311 -1003 2663 29 3 19 chr13 39065564 39065880 -80679018 - AluY SINE Alu 0 311 1 241 309 89 32 chr13 39065897 39066020 -80678878 + L2 LINE L2 3184 3313 0 2000 181 12 35 chr13 39067488 39067887 -80677011 - MLT1B LTR MaLR 0 390 1 250 148 0 148 chr13 39067983 39068044 -80676854 - L2 LINE L2 -190 3082 3031 415 278 216 22 chr13 39068595 39068868 -80676030 - MLT1J1 LTR MaLR -117 329 4 2295 91 3 0 chr13 39069291 39069589 -80675309 + AluY SINE Alu 1 299 -12 382 239 209 0 chr13 39070462 39070596 -80674302 + MIR SINE MIR 74 235 -27 378 259 9 0 chr13 39071059 39071171 -80673727 - L1M4 LINE L1 -1059 5087 4975 * 2313 220 100 62 chr13 39071167 39071333 -80673565 - L1MEc LINE L1 -2111 4104 3946 2019 68 4 0 chr13 39071333 39071582 -80673316 - AluY SINE Alu -2 309 60 2313 220 100 62 chr13 39071582 39072003 -80672895 - L1MEc LINE L1 -2269 3946 3467 2505 99 0 0 chr13 39072003 39072316 -80672582 - AluSq SINE Alu 0 313 1 2313 220 100 62 chr13 39072316 39072636 -80672262 - L1MEc LINE L1 -2748 3467 3161 * 3176 247 60 40 chr13 39072605 39074238 -80670660 - L1MEc LINE L1 -4436 1960 201 2267 98 20 0 chr13 39074984 39075279 -80669619 - AluSp SINE Alu -12 301 1 1873 187 89 11 chr13 39075487 39075845 -80669053 - MLT1B LTR MaLR -4 386 1 1591 174 0 25 chr13 39075914 39076190 -80668708 + AluJb SINE Alu 1 269 -43 1816 237 79 7 chr13 39076346 39076801 -80668097 - L1ME3A LINE L1 -174 5996 5509 549 213 121 87 chr13 39076812 39076949 -80667949 + L1ME4a LINE L1 5710 5841 -280 1992 148 10 3 chr13 39076949 39077259 -80667639 + AluSx SINE Alu 1 312 0 549 213 121 87 chr13 39077259 39077511 -80667387 + L1ME4a LINE L1 5841 6112 -9 531 244 141 6 chr13 39077770 39077926 -80666972 + MER5B DNA MER1_type 1 177 -1 3636 132 29 61 chr13 39078261 39078884 -80666014 + LTR26 LTR ERV1 1 603 0 519 279 37 23 chr13 39078965 39079180 -80665718 - L1ME1 LINE L1 -5 6161 5944 1837 179 153 37 chr13 39079187 39079678 -80665220 - LTR10A LTR ERV1 -61 548 1 1876 202 122 5 chr13 39079687 39080180 -80664718 - L1ME1 LINE L1 -211 5953 5397 440 182 0 34 chr13 39080220 39080308 -80664590 + MER21B LTR ERV1 6 90 -773 2629 216 101 61 chr13 39080332 39080880 -80664018 + MER21B LTR ERV1 22 613 -250 1994 127 0 16 chr13 39080880 39081196 -80663702 + AluSx SINE Alu 1 311 -1 2629 216 101 61 chr13 39081196 39081446 -80663452 + MER21B LTR ERV1 613 852 -11 506 181 38 56 chr13 39081447 39081607 -80663291 + L1M4 LINE L1 4959 5115 -1031 208 309 165 10 chr13 39081654 39081751 -80663147 - MIR SINE MIR -131 131 20 1752 146 55 6 chr13 39082061 39082390 -80662508 + L1MA8 LINE L1 5947 6291 0 1788 164 0 0 chr13 39083107 39083394 -80661504 + AluJb SINE Alu 1 287 -25 1981 129 3 3 chr13 39083402 39083705 -80661193 + AluSx SINE Alu 1 303 -9 1236 88 6 2 chr13 39083857 39084029 -80660869 - L1HS LINE L1 -267 5854 5674 2802 44 3 3 chr13 39084029 39084363 -80660535 + L1PA5 LINE L1 5804 6145 -9 1236 88 6 2 chr13 39084363 39084393 -80660505 - L1HS LINE L1 -447 5674 5646 205 215 185 15 chr13 39085217 39085282 -80659616 - MIR3 SINE MIR -7 201 126 529 283 178 0 chr13 39085289 39085508 -80659390 - MIR SINE MIR -3 259 2 415 353 14 0 chr13 39085685 39085824 -80659074 - MIR3 SINE MIR -8 200 60 543 231 74 79 chr13 39087208 39087411 -80657487 + L3 LINE CR1 1178 1379 -198 356 290 81 81 chr13 39087454 39087482 -80657416 - L2 LINE L2 -1 3271 3244 392 160 122 99 chr13 39087482 39087613 -80657285 - MER94 DNA DNA 0 134 1 356 290 81 81 chr13 39087613 39087708 -80657190 - L2 LINE L2 -27 3245 3148 180 328 0 31 chr13 39087752 39087816 -80657082 - MIR3 SINE MIR -7 201 140 * 354 297 8 34 chr13 39087809 39087927 -80656971 - L2 LINE L2 0 3313 3199 256 339 62 8 chr13 39087956 39088086 -80656812 - L3 LINE CR1 -162 1415 1279 1171 74 0 0 chr13 39088087 39088235 -80656663 + L1PA8 LINE L1 5962 6109 -63 328 322 249 8 chr13 39088383 39088628 -80656270 - L2 LINE L2 -1 3312 3009 216 195 195 26 chr13 39088698 39088775 -80656123 - L3 LINE CR1 -899 678 589 264 122 0 0 chr13 39089418 39089459 -80655439 + (A)n Simple_repeat Simple_repeat 1 41 0 221 200 0 0 chr13 39089727 39089767 -80655131 - L2 LINE L2 0 3313 3274 333 349 47 0 chr13 39090279 39090408 -80654490 + MIR SINE MIR 60 194 -68 2767 98 0 6 chr13 39090548 39090914 -80653984 - THE1B LTR MaLR 0 364 1 235 163 0 23 chr13 39091842 39091885 -80653013 + L2 LINE L2 3262 3303 -10 383 299 55 18 chr13 39091936 39092100 -80652798 - MIR3 SINE MIR -9 199 30 180 250 0 77 chr13 39092312 39092364 -80652534 + MER5B DNA MER1_type 5 52 -126 207 302 217 0 chr13 39093212 39093318 -80651580 + MIR SINE MIR 134 262 0 206 322 26 70 chr13 39094591 39094706 -80650192 + MIR SINE MIR 16 125 -83 539 265 105 6 chr13 39094770 39094932 -80649966 + MER5A DNA MER1_type 12 189 0 691 257 46 28 chr13 39095056 39095274 -80649624 - MIR SINE MIR -37 225 4 1295 189 0 0 chr13 39095563 39095791 -80649107 + L1MC1 LINE L1 6016 6243 -90 21 36 0 0 chr13 39095800 39095828 -80649070 + AT_rich Low_complexity Low_complexity 1 28 0 2164 108 3 7 chr13 39095837 39096143 -80648755 + AluSx SINE Alu 1 305 -7 1173 164 0 9 chr13 39096143 39096356 -80648542 + AluJo SINE Alu 88 298 -14 843 216 28 23 chr13 39097267 39097473 -80647425 + MIR SINE MIR 29 233 -29 223 290 118 0 chr13 39097624 39097717 -80647181 - L2 LINE L2 -21 3292 3189 627 274 11 11 chr13 39098817 39098996 -80645902 + MIR3 SINE MIR 30 208 0 22 0 0 0 chr13 39099804 39099826 -80645072 + AT_rich Low_complexity Low_complexity 1 22 0 201 121 0 0 chr13 39101952 39101985 -80642913 + (ATG)n Simple_repeat Simple_repeat 3 35 0 269 250 17 17 chr13 39101986 39102046 -80642852 - MIR SINE MIR -6 256 197 449 362 23 18 chr13 39102339 39102575 -80642323 + MIR SINE MIR 8 249 -13 2624 127 43 19 chr13 39102848 39103266 -80641632 - MSTA LTR MaLR 0 428 1 851 222 5 26 chr13 39103372 39103561 -80641337 + MER5A DNA MER1_type 1 185 -4 1163 169 113 108 chr13 39104154 39104516 -80640382 + MLT1A1 LTR MaLR 2 365 0 640 172 26 0 chr13 39104544 39104660 -80640238 + AluJo SINE Alu 4 122 -190 43715 34 21 1 chr13 39104682 39110713 -80634185 + L1PA2 LINE L1 3 6155 0 936 172 5 32 chr13 39110736 39110922 -80633976 + AluJo SINE Alu 120 300 -12 571 269 9 104 chr13 39112374 39112586 -80632312 - MIR SINE MIR -38 224 33 305 276 60 82 chr13 39112972 39113106 -80631792 - MIR SINE MIR -124 138 8 21 0 0 0 chr13 39113440 39113461 -80631437 + AT_rich Low_complexity Low_complexity 1 21 0 1713 116 7 25 chr13 39113541 39113689 -80631209 - AluSg SINE Alu -31 279 137 2299 93 0 3 chr13 39113689 39114002 -80630896 - AluSq SINE Alu -1 312 1 1713 116 7 25 chr13 39114002 39114137 -80630761 - AluSg SINE Alu -173 137 1 309 314 69 0 chr13 39115095 39115197 -80629701 - L2 LINE L2 -19 3253 3145 1840 89 100 4 chr13 39115309 39115578 -80629320 - AluSx SINE Alu -17 295 1 263 273 65 0 chr13 39115589 39115666 -80629232 + MER5A DNA MER1_type 96 177 -12 629 288 104 14 chr13 39115934 39116156 -80628742 + MIR SINE MIR 12 253 -9 535 108 21 21 chr13 39116611 39116704 -80628194 + MER53 DNA DNA 1 93 -96 418 132 22 33 chr13 39116627 39116718 -80628180 - MER53 DNA DNA -7 182 93 * 249 57 0 0 chr13 39117264 39117299 -80627599 + (A)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr13 39117444 39117465 -80627433 + AT_rich Low_complexity Low_complexity 1 21 0 1811 137 0 11 chr13 39117465 39117749 -80627149 + AluJo SINE Alu 15 295 -17 441 279 104 7 chr13 39117895 39118049 -80626849 + MIR3 SINE MIR 32 200 -8 180 0 0 0 chr13 39120127 39120147 -80624751 + (A)n Simple_repeat Simple_repeat 1 20 0 271 305 101 32 chr13 39120683 39120853 -80624045 + MIR SINE MIR 3 201 -61 740 184 153 0 chr13 39120853 39121016 -80623882 + MER5A DNA MER1_type 1 188 -1 271 305 101 32 chr13 39121016 39121044 -80623854 + MIR SINE MIR 201 226 -36 2677 58 81 0 chr13 39121957 39122304 -80622594 - THE1C LTR MaLR 0 375 1 286 247 12 24 chr13 39122425 39122510 -80622388 - L2 LINE L2 0 3313 3230 730 252 81 66 chr13 39122867 39123072 -80621826 + MIR SINE MIR 1 212 -50 2382 76 0 0 chr13 39123072 39123373 -80621525 + AluSx SINE Alu 1 301 -11 730 252 81 66 chr13 39123373 39123425 -80621473 + MIR SINE MIR 212 262 0 237 250 47 0 chr13 39124053 39124117 -80620781 + MIR SINE MIR 137 203 -59 842 221 201 20 chr13 39124136 39124442 -80620456 - MLT1I LTR MaLR -19 390 72 299 238 0 0 chr13 39124471 39124534 -80620364 + MIR SINE MIR 200 262 0 346 302 16 8 chr13 39124540 39124669 -80620229 + MIR SINE MIR 130 259 -3 417 313 82 26 chr13 39125355 39125550 -80619348 - L2 LINE L2 -2 3311 3106 514 232 173 5 chr13 39126066 39126251 -80618647 + LTR16C LTR ERVL 274 489 -2 224 256 39 26 chr13 39126255 39126333 -80618565 + MIR SINE MIR 79 157 -105 780 261 19 71 chr13 39126539 39126628 -80618270 + MIR SINE MIR 9 101 -161 2322 151 58 19 chr13 39126628 39127040 -80617858 + MSTA LTR MaLR 1 428 0 780 261 19 71 chr13 39127040 39127218 -80617680 + MIR SINE MIR 101 262 0 656 273 122 37 chr13 39127470 39127906 -80616992 - L1ME4a LINE L1 -115 6006 5534 219 260 67 29 chr13 39129050 39129154 -80615744 - L3 LINE CR1 -417 1160 1053 582 216 133 76 chr13 39129355 39129791 -80615107 + L1ME4a LINE L1 5661 6121 0 1952 97 7 7 chr13 39129915 39130205 -80614693 - AluSg SINE Alu -18 292 3 2198 93 4 0 chr13 39131145 39131454 -80613444 - AluSp SINE Alu 0 311 2 351 0 0 0 chr13 39131464 39131503 -80613395 + (T)n Simple_repeat Simple_repeat 1 39 0 533 268 20 40 chr13 39131896 39132094 -80612804 + MIR SINE MIR 61 254 -8 594 215 6 37 chr13 39132499 39132662 -80612236 + MIR SINE MIR 104 261 -1 195 310 50 30 chr13 39132717 39132817 -80612081 + MIR SINE MIR 88 189 -73 212 0 36 0 chr13 39132859 39132887 -80612011 + (TTG)n Simple_repeat Simple_repeat 2 30 0 345 47 0 0 chr13 39132893 39132936 -80611962 + (TG)n Simple_repeat Simple_repeat 2 44 0 2087 99 11 14 chr13 39132936 39133220 -80611678 - AluSc SINE Alu -26 283 1 521 229 11 11 chr13 39133832 39134007 -80610891 + GA-rich Low_complexity Low_complexity 3 177 0 306 331 60 0 chr13 39134706 39134857 -80610041 - MIR SINE MIR -7 255 96 409 194 142 37 chr13 39135424 39135558 -80609340 + MIR SINE MIR 89 236 -26 1103 254 23 23 chr13 39136041 39136383 -80608515 - L1MEc LINE L1 -4512 1884 1543 180 271 0 0 chr13 39136476 39136524 -80608374 - L2 LINE L2 0 3313 3266 1932 132 86 9 chr13 39136568 39136916 -80607982 - THE1C LTR MaLR 0 375 1 215 303 58 32 chr13 39136958 39137113 -80607785 - L2 LINE L2 -292 3021 2863 959 189 43 56 chr13 39137114 39137179 -80607719 + MER96B DNA MER1_type? 1 65 -352 2306 106 0 3 chr13 39137179 39137480 -80607418 + AluSx SINE Alu 1 300 -12 959 189 43 56 chr13 39137480 39137647 -80607251 + MER96B DNA MER1_type? 65 230 -187 328 183 0 16 chr13 39137652 39137731 -80607167 - MER96B DNA MER1_type? -102 73 1 216 373 9 9 chr13 39138242 39138352 -80606546 + MIR SINE MIR 39 148 -114 279 268 83 51 chr13 39139304 39139461 -80605437 - MER20B DNA MER1_type -616 167 6 288 359 0 8 chr13 39139594 39139711 -80605187 + MIR SINE MIR 77 192 -70 365 314 69 0 chr13 39141455 39141643 -80603255 + MIR SINE MIR 62 262 0 4198 55 2 4 chr13 39142176 39142700 -80602198 + L1PA8 LINE L1 5650 6172 0 686 112 87 0 chr13 39142724 39142885 -80602013 + GA-rich Low_complexity Low_complexity 5 179 0 1226 80 11 0 chr13 39142892 39143067 -80601831 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 644 115 21 0 chr13 39144027 39144123 -80600775 + AluJo SINE Alu 37 134 -178 22 35 0 0 chr13 39144174 39144203 -80600695 + AT_rich Low_complexity Low_complexity 1 29 0 257 288 172 18 chr13 39144273 39144710 -80600188 + L1MB4 LINE L1 2311 2814 -3332 * 1268 215 37 44 chr13 39144691 39144735 -80600163 + L1MB4 LINE L1 3346 3389 -2757 3537 118 39 0 chr13 39144735 39145242 -80599656 - MER1A DNA MER1_type 0 527 1 1268 215 37 44 chr13 39145242 39145602 -80599296 + L1MB4 LINE L1 3389 3747 -2399 828 220 24 43 chr13 39145607 39145816 -80599082 + MER6B DNA MER2_type 6 210 0 526 226 16 16 chr13 39145816 39145940 -80598958 + L1MB4 LINE L1 3746 3869 -2277 * 4567 183 28 13 chr13 39145935 39146805 -80598093 + L1MB4 LINE L1 4597 5504 -676 246 32 0 0 chr13 39146805 39146836 -80598062 + (CA)n Simple_repeat Simple_repeat 2 32 0 4567 183 28 13 chr13 39146836 39147516 -80597382 + L1MB4 LINE L1 5504 6172 -8 256 189 0 0 chr13 39147612 39147665 -80597233 + L1MCc LINE L1 1410 1462 -4961 962 112 0 0 chr13 39147676 39147801 -80597097 - AluSq SINE Alu -78 235 111 1564 268 105 10 chr13 39147810 39148485 -80596413 + L1MCc LINE L1 2926 3664 -3277 30 0 0 0 chr13 39148728 39148758 -80596140 + AT_rich Low_complexity Low_complexity 1 30 0 255 290 29 0 chr13 39148895 39148964 -80595934 - L2 LINE L2 -3 3269 3199 1426 153 9 113 chr13 39149132 39149459 -80595439 - AluJb SINE Alu -9 293 1 272 27 27 0 chr13 39149581 39149618 -80595280 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 189 143 29 0 chr13 39150012 39150047 -80594851 + L2 LINE L2 3266 3301 -12 509 267 82 0 chr13 39150364 39150510 -80594388 - MIR SINE MIR -2 260 103 181 333 148 30 chr13 39150593 39150896 -80594002 - L2 LINE L2 -1117 2197 1859 279 0 0 0 chr13 39150944 39150975 -80593923 + (TC)n Simple_repeat Simple_repeat 2 32 0 234 0 0 0 chr13 39151801 39151827 -80593071 + (A)n Simple_repeat Simple_repeat 1 26 0 1215 283 60 22 chr13 39153848 39154617 -80590281 + L2 LINE L2 2518 3312 -1 181 196 39 59 chr13 39154625 39154676 -80590222 - MIR SINE MIR -209 53 4 236 286 9 54 chr13 39154917 39155029 -80589869 + L2 LINE L2 3121 3227 -86 388 277 21 0 chr13 39155528 39155622 -80589276 + MER117 DNA MER1_type 101 196 -1 1778 175 0 19 chr13 39157143 39157451 -80587447 + AluJb SINE Alu 1 302 -10 318 239 29 142 chr13 39158232 39158471 -80586427 - MIR SINE MIR -16 246 35 2087 142 3 0 chr13 39159110 39159406 -80585492 - AluSx SINE Alu -15 297 1 340 329 41 7 chr13 39159429 39159575 -80585323 + MIR SINE MIR 30 180 -82 268 220 30 50 chr13 39159879 39159980 -80584918 - LTR67 LTR ERVL -14 509 412 2186 126 0 0 chr13 39160936 39161262 -80583636 - AluSx SINE Alu 0 312 1 23 0 0 0 chr13 39161300 39161323 -80583575 + AT_rich Low_complexity Low_complexity 1 23 0 3285 228 88 53 chr13 39161652 39162884 -80582014 - L1MC5 LINE L1 -30 7931 6656 512 199 65 111 chr13 39162905 39163211 -80581687 - L1MC5 LINE L1 -371 7590 7299 22017 66 3 0 chr13 39164824 39168502 -80576396 + L1PA6 LINE L1 2460 6154 0 2243 130 30 16 chr13 39169255 39169625 -80575273 - THE1C LTR MaLR 0 375 1 1098 278 66 37 chr13 39170258 39170785 -80574113 + L1ME4a LINE L1 5533 6078 -43 342 0 0 0 chr13 39170785 39170823 -80574075 + (TA)n Simple_repeat Simple_repeat 2 39 0 1098 278 66 37 chr13 39170823 39170838 -80574060 + L1ME4a LINE L1 6078 6091 -30 428 254 105 74 chr13 39171992 39172315 -80572583 - MLT1I LTR MaLR -7 402 70 1440 175 108 16 chr13 39172686 39173001 -80571897 - MER2 DNA MER2_type 0 344 1 437 254 75 128 chr13 39173591 39173819 -80571079 + L2 LINE L2 2467 2706 -608 2394 50 0 0 chr13 39173819 39174140 -80570758 + AluY SINE Alu 1 321 0 437 254 75 128 chr13 39174140 39174185 -80570713 + L2 LINE L2 2706 2752 -562 617 68 0 0 chr13 39174185 39174273 -80570625 - L1PB1 LINE L1 -1 6150 6063 437 254 75 128 chr13 39174273 39174296 -80570602 + L2 LINE L2 2752 2775 -539 432 133 11 33 chr13 39174296 39174386 -80570512 + L1PB4 LINE L1 6068 6155 -1 437 254 75 128 chr13 39174386 39174609 -80570289 + L2 LINE L2 2775 2961 -353 194 108 0 27 chr13 39175887 39175924 -80568974 - MER5B DNA MER1_type -77 101 66 279 336 0 0 chr13 39176797 39176901 -80567997 - L3 LINE CR1 -8 1569 1466 748 356 76 7 chr13 39177457 39177890 -80567008 - L3 LINE CR1 -170 1407 945 330 87 0 0 chr13 39178731 39178777 -80566121 + (CA)n Simple_repeat Simple_repeat 2 47 0 342 0 0 0 chr13 39179857 39179895 -80565003 + (TG)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr13 39180666 39180688 -80564210 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr13 39180928 39180963 -80563935 + AT_rich Low_complexity Low_complexity 1 35 0 382 276 41 32 chr13 39181834 39181957 -80562941 - MIR SINE MIR -137 125 2 724 281 114 48 chr13 39181993 39182406 -80562492 - MLT1J1 LTR MaLR -6 440 1 1271 112 0 0 chr13 39182429 39182607 -80562291 + AluSg/x SINE Alu 127 304 -8 2368 130 0 23 chr13 39182828 39183173 -80561725 + MER1B DNA MER1_type 1 337 0 2130 126 0 0 chr13 39183264 39183566 -80561332 + AluSg SINE Alu 1 302 -8 487 266 28 0 chr13 39184884 39185027 -80559871 - MER103 DNA DNA -17 149 3 180 271 62 52 chr13 39185328 39185424 -80559474 - L3 LINE CR1 -334 1243 1147 1776 124 0 0 chr13 39185846 39186103 -80558795 - AluSx SINE Alu -55 257 1 1651 177 3 7 chr13 39186545 39186839 -80558059 + AluJo SINE Alu 1 293 -19 484 272 83 17 chr13 39187948 39188128 -80556770 - MIR SINE MIR -2 260 69 932 105 0 15 chr13 39188828 39188961 -80555937 - FLAM_C SINE Alu -2 131 1 202 339 16 48 chr13 39188971 39189095 -80555803 - MIR SINE MIR -120 142 23 26 0 0 0 chr13 39190537 39190563 -80554335 + AT_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr13 39191751 39191778 -80553120 + (TG)n Simple_repeat Simple_repeat 1 27 0 239 147 0 0 chr13 39194041 39194075 -80550823 + AluSx SINE Alu 1 34 -265 25 0 0 0 chr13 39194467 39194492 -80550406 + AT_rich Low_complexity Low_complexity 1 25 0 1724 97 4 16 chr13 39194503 39194842 -80550056 + AluSx SINE Alu 39 374 0 1645 127 156 16 chr13 39195154 39195462 -80549436 + MLT1C LTR MaLR 2 352 -115 1813 140 0 0 chr13 39195462 39195733 -80549165 + AluSx SINE Alu 1 271 -41 1234 38 5 32 chr13 39195788 39195973 -80548925 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 300 200 0 0 chr13 39195979 39196049 -80548849 + GA-rich Low_complexity Low_complexity 2 71 0 471 131 9 0 chr13 39196049 39196129 -80548769 + MLT1C LTR MaLR 245 407 -60 3023 179 72 34 chr13 39196131 39196846 -80548052 - Tigger7 DNA MER2_type -21 2566 1 236 121 0 0 chr13 39196846 39196878 -80548020 + MLT1C LTR MaLR 434 465 -2 433 263 112 50 chr13 39196942 39197201 -80547697 + L2 LINE L2 2970 3244 -69 238 294 171 24 chr13 39198059 39198229 -80546669 + MIR SINE MIR 64 258 -4 633 205 145 6 chr13 39201858 39202024 -80542874 + MER5A DNA MER1_type 1 189 0 1779 157 3 0 chr13 39202408 39202701 -80542197 - AluJb SINE Alu -16 296 3 463 333 78 16 chr13 39203467 39203725 -80541173 - L1M4 LINE L1 -2208 3938 3665 1840 106 53 0 chr13 39204007 39204291 -80540607 + AluSc SINE Alu 1 298 0 2012 131 7 0 chr13 39204532 39204829 -80540069 + AluSg SINE Alu 1 299 -11 219 152 0 136 chr13 39206193 39206259 -80538639 + L2 LINE L2 3252 3308 -5 180 111 0 0 chr13 39207022 39207049 -80537849 + (CA)n Simple_repeat Simple_repeat 1 27 0 321 89 0 0 chr13 39207612 39207657 -80537241 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 803 152 49 12 chr13 39208086 39208250 -80536648 + L1MB1 LINE L1 5998 6167 -1 1958 143 0 3 chr13 39208512 39208819 -80536079 + AluSx SINE Alu 1 306 -6 332 158 40 13 chr13 39209012 39209088 -80535810 - L1ME1 LINE L1 -5 6161 6084 1970 173 131 52 chr13 39209091 39209549 -80535349 + MLT1D LTR MaLR 12 505 0 936 196 116 40 chr13 39209549 39209706 -80535192 - L1ME2 LINE L1 -79 6154 6010 2092 120 0 0 chr13 39209706 39209997 -80534901 - AluSx SINE Alu -21 291 1 936 196 116 40 chr13 39209997 39210115 -80534783 - L1ME2 LINE L1 -223 6010 5858 6519 134 48 51 chr13 39210123 39210571 -80534327 - Tigger3b DNA MER2_type -1797 1231 783 1766 151 0 35 chr13 39210571 39210882 -80534016 - AluJo SINE Alu -12 300 1 6519 134 48 51 chr13 39210882 39210955 -80533943 - Tigger3b DNA MER2_type -2245 783 711 1931 140 0 0 chr13 39210955 39211255 -80533643 + AluSx SINE Alu 1 300 -12 6519 134 48 51 chr13 39211255 39211754 -80533144 - Tigger3b DNA MER2_type -2317 711 212 2056 128 25 0 chr13 39211754 39212074 -80532824 - L1PB1 LINE L1 0 6151 5824 6519 134 48 51 chr13 39212074 39212285 -80532613 - Tigger3b DNA MER2_type -2816 212 2 2228 202 45 12 chr13 39212287 39212401 -80532497 - L1ME2 LINE L1 -383 5852 5743 1932 191 39 34 chr13 39212401 39212866 -80532032 + MLT1C LTR MaLR 1 467 0 2228 202 45 12 chr13 39212866 39213369 -80531529 - L1ME2 LINE L1 -492 5743 5210 1919 248 66 16 chr13 39213370 39213919 -80530979 - L1ME2 LINE L1 -5786 610 35 634 149 0 0 chr13 39213930 39214024 -80530874 - AluSx SINE Alu -25 284 191 1117 85 0 0 chr13 39214025 39214166 -80530732 - AluSx SINE Alu -171 141 1 1682 76 27 4 chr13 39214728 39214953 -80529945 + MER30 DNA MER1_type 1 230 0 395 264 0 0 chr13 39215162 39215249 -80529649 - L2 LINE L2 0 3272 3186 597 14 0 0 chr13 39215359 39215429 -80529469 + (CATAA)n Simple_repeat Simple_repeat 2 71 0 225 347 93 13 chr13 39215484 39215634 -80529264 - L3 LINE CR1 -223 1354 1193 412 338 111 0 chr13 39215661 39215859 -80529039 + MIR SINE MIR 31 250 -12 1455 172 67 2 chr13 39216340 39216712 -80528186 + MLT2B2 LTR ERVL 2 476 -39 805 157 4 4 chr13 39216726 39216972 -80527926 + (TCCA)n Simple_repeat Simple_repeat 1 246 0 266 134 6 29 chr13 39216985 39217001 -80527897 + MLT2C2 LTR ERVL 426 441 -23 950 143 6 0 chr13 39217001 39217176 -80527722 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 492 62 0 0 chr13 39217182 39217246 -80527652 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 266 134 6 29 chr13 39217246 39217285 -80527613 + MLT2C2 LTR ERVL 446 464 0 231 200 140 0 chr13 39217446 39217546 -80527352 - Charlie7 DNA MER1_type -69 2543 2430 * 240 182 15 61 chr13 39217539 39217605 -80527293 - Charlie7 DNA MER1_type -2511 101 39 211 204 61 0 chr13 39217680 39217729 -80527169 - L2 LINE L2 -16 3256 3205 920 114 8 0 chr13 39218073 39218205 -80526693 - FLAM_C SINE Alu 0 133 1 313 345 0 0 chr13 39218385 39218495 -80526403 + (CA)n Simple_repeat Simple_repeat 1 110 0 220 320 131 0 chr13 39219109 39219231 -80525667 + MIR3 SINE MIR 3 140 -68 219 325 56 19 chr13 39219878 39220038 -80524860 - L2 LINE L2 -312 3001 2836 252 345 81 21 chr13 39220111 39220395 -80524503 - L2 LINE L2 -706 2608 2308 339 353 38 61 chr13 39220437 39220596 -80524302 - MIR SINE MIR -6 256 104 2012 122 36 42 chr13 39220596 39220932 -80523966 + MER1B DNA MER1_type 4 337 0 339 353 38 61 chr13 39220932 39221033 -80523865 - MIR SINE MIR -158 104 2 905 258 107 4 chr13 39221683 39221908 -80522990 - MIR SINE MIR -6 256 9 2645 140 20 40 chr13 39222341 39222392 -80522506 - MER31A LTR ERV1 0 485 434 1725 109 80 14 chr13 39222392 39222668 -80522230 + AluSx SINE Alu 3 296 -16 2645 140 20 40 chr13 39222668 39223110 -80521788 - MER31A LTR ERV1 -51 434 2 211 242 21 116 chr13 39223217 39223312 -80521586 - MIR SINE MIR 0 262 177 * 2262 265 123 45 chr13 39223304 39223847 -80521051 + L2 LINE L2 1938 2437 -876 2301 93 0 0 chr13 39223847 39224157 -80520741 + AluSx SINE Alu 1 310 -2 2262 265 123 45 chr13 39224157 39224875 -80520023 + L2 LINE L2 2437 3305 -8 261 0 0 0 chr13 39224876 39224905 -80519993 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 520 204 0 10 chr13 39224911 39225014 -80519884 - MIR SINE MIR -125 137 36 223 229 0 21 chr13 39225269 39225317 -80519581 - L2 LINE L2 -76 3196 3150 322 312 47 53 chr13 39225504 39225674 -80519224 - L1MDa LINE L1 -3899 2641 2473 1334 94 5 28 chr13 39226055 39226267 -80518631 - AluJb SINE Alu -20 292 86 194 250 0 58 chr13 39228590 39228642 -80516256 + MIR SINE MIR 106 154 -108 276 308 81 75 chr13 39229509 39229869 -80515029 - L2 LINE L2 0 3272 2911 261 269 0 77 chr13 39230394 39230498 -80514400 - MER5A DNA MER1_type 0 189 94 2014 132 148 8 chr13 39231147 39231519 -80513379 - MSTA LTR MaLR -4 424 1 365 209 15 0 chr13 39231793 39231860 -80513038 - MER81 DNA DNA -7 107 40 399 233 157 46 chr13 39231899 39232122 -80512776 + MIR SINE MIR 14 251 -11 466 285 117 35 chr13 39232869 39233537 -80511361 - L2 LINE L2 -87 3226 2231 219 297 72 9 chr13 39234749 39234860 -80510038 + MIR3 SINE MIR 54 171 -37 488 292 77 10 chr13 39235605 39235800 -80509098 + MIR SINE MIR 4 211 -51 1853 128 7 34 chr13 39235957 39236285 -80508613 - AluJo SINE Alu 0 312 3 413 278 75 12 chr13 39236892 39237065 -80507833 - MIR SINE MIR -40 222 39 2330 91 3 0 chr13 39237095 39237403 -80507495 - AluSx SINE Alu -3 309 1 252 282 43 91 chr13 39238713 39238922 -80505976 + MIR SINE MIR 14 212 -50 24 0 0 0 chr13 39239400 39239424 -80505474 + AT_rich Low_complexity Low_complexity 1 24 0 203 268 0 0 chr13 39239974 39240015 -80504883 + polypyrimidine Low_complexity Low_complexity 4 44 0 2406 166 24 7 chr13 39240547 39240964 -80503934 + MSTB LTR MaLR 3 426 0 2216 112 3 6 chr13 39241374 39241687 -80503211 + AluSx SINE Alu 1 312 0 700 235 93 0 chr13 39241779 39241941 -80502957 + MER45A DNA AcHobo 1 177 -1 254 311 78 0 chr13 39241971 39242074 -80502824 - MIR SINE MIR -55 153 43 1053 223 20 24 chr13 39242610 39242857 -80502041 - MIR SINE MIR -1 261 16 228 184 0 0 chr13 39243086 39243135 -80501763 + CT-rich Low_complexity Low_complexity 2 50 0 234 0 0 0 chr13 39243158 39243184 -80501714 + (GA)n Simple_repeat Simple_repeat 2 27 0 297 219 31 0 chr13 39243727 39243791 -80501107 + Charlie8 DNA MER1_type 223 288 -2129 2044 181 83 15 chr13 39243792 39244251 -80500647 - L1MD1 LINE L1 -7 6235 5746 226 200 20 0 chr13 39244290 39244340 -80500558 + Charlie8 DNA MER1_type 1376 1426 -991 223 220 20 0 chr13 39244921 39244971 -80499927 - L2 LINE L2 -5 3267 3217 326 296 57 44 chr13 39245421 39245583 -80499315 - MIR SINE MIR -67 141 1 679 284 167 0 chr13 39245715 39246050 -80498848 - LTR16A LTR ERVL -3 447 57 1027 108 27 0 chr13 39246684 39246832 -80498066 - L1PA7 LINE L1 -1 6153 6002 213 213 0 0 chr13 39246868 39246915 -80497983 + (CA)n Simple_repeat Simple_repeat 2 48 0 180 364 99 0 chr13 39247002 39247123 -80497775 + L2 LINE L2 2920 3052 -220 31 0 0 0 chr13 39247678 39247709 -80497189 + AT_rich Low_complexity Low_complexity 1 31 0 2102 129 20 0 chr13 39247850 39248153 -80496745 + AluSp SINE Alu 1 309 -4 2463 65 0 0 chr13 39248534 39248827 -80496071 + AluY SINE Alu 1 293 -18 2944 81 8 0 chr13 39249422 39249794 -80495104 + THE1C LTR MaLR 1 375 0 3765 126 42 11 chr13 39249985 39250626 -80494272 + L1MA5 LINE L1 5640 6300 0 276 353 8 17 chr13 39250849 39250968 -80493930 + MIR SINE MIR 2 119 -143 186 43 0 0 chr13 39251056 39251079 -80493819 + (CAT)n Simple_repeat Simple_repeat 1 23 0 324 0 0 0 chr13 39251540 39251576 -80493322 + (CA)n Simple_repeat Simple_repeat 2 37 0 199 387 45 9 chr13 39252431 39252542 -80492356 + L2 LINE L2 3144 3258 -14 246 116 0 0 chr13 39252671 39252714 -80492184 + (CA)n Simple_repeat Simple_repeat 1 43 0 537 168 90 13 chr13 39253514 39253669 -80491229 - MER69 DNA AcHobo -708 1818 1652 2332 230 76 10 chr13 39253701 39254296 -80490602 - MER69 DNA AcHobo -537 689 56 225 0 0 0 chr13 39255198 39255223 -80489675 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2419 93 0 3 chr13 39256300 39256602 -80488296 - AluSc SINE Alu -8 301 1 355 271 266 11 chr13 39257522 39257710 -80487188 + MIR SINE MIR 3 238 -24 651 221 51 32 chr13 39257735 39257952 -80486946 + MIR SINE MIR 10 230 -32 1701 147 68 0 chr13 39258046 39258340 -80486558 + AluJb SINE Alu 1 312 0 323 83 0 0 chr13 39258349 39258397 -80486501 + L1MB4 LINE L1 6128 6175 -5 4673 161 25 26 chr13 39258426 39259733 -80485165 + L1MB8 LINE L1 4869 6173 -5 3866 96 13 8 chr13 39259731 39260583 -80484315 - L1PA10 LINE L1 -522 5646 4794 * 3729 79 20 4 chr13 39260583 39261087 -80483811 + L1PA10 LINE L1 5652 6164 -4 236 208 0 52 chr13 39261832 39261909 -80482989 + CT-rich Low_complexity Low_complexity 3 75 0 1042 242 206 32 chr13 39262446 39262908 -80481990 + MLT1G LTR MaLR 47 588 -2 1823 161 3 10 chr13 39263657 39263961 -80480937 - AluJo SINE Alu -2 310 9 1866 135 39 7 chr13 39264065 39264368 -80480530 + AluSx SINE Alu 1 312 0 2243 96 10 0 chr13 39264807 39265098 -80479800 + AluSp SINE Alu 1 294 -19 1763 158 156 15 chr13 39265476 39265881 -80479017 + MLT1C LTR MaLR 6 467 0 287 284 39 0 chr13 39266503 39266605 -80478293 + MIR SINE MIR 92 197 -65 208 239 138 138 chr13 39266701 39266810 -80478088 + L2 LINE L2 3146 3254 -18 678 212 150 49 chr13 39268551 39268938 -80475960 - L1MC5 LINE L1 -30 7931 7506 376 327 133 15 chr13 39269557 39269948 -80474950 + LTR16A1 LTR ERVL 16 452 -5 1169 221 18 27 chr13 39270283 39270661 -80474237 + L2 LINE L2 2676 3050 -263 730 276 98 20 chr13 39270678 39270975 -80473923 + Charlie2 DNA MER1_type 5 324 -2458 1827 202 16 21 chr13 39270978 39271408 -80473490 + Charlie2 DNA MER1_type 1856 2283 -579 723 173 53 132 chr13 39271421 39271511 -80473387 + Charlie2 DNA MER1_type 2478 2574 -288 806 139 46 0 chr13 39271511 39271662 -80473236 + L1MA8 LINE L1 6134 6291 0 723 173 53 132 chr13 39271662 39271784 -80473114 + Charlie2 DNA MER1_type 2574 2655 -207 2306 95 7 0 chr13 39271784 39272078 -80472820 - AluSc SINE Alu -13 296 1 723 173 53 132 chr13 39272078 39272206 -80472692 + Charlie2 DNA MER1_type 2655 2792 -70 5152 221 27 22 chr13 39272216 39272555 -80472343 + L1M4 LINE L1 3308 3644 -2502 1467 88 48 0 chr13 39272555 39272783 -80472115 + L1MA5A LINE L1 6055 6293 -4 5152 221 27 22 chr13 39272783 39273796 -80471102 + L1M4 LINE L1 3644 4666 -1480 1942 146 0 3 chr13 39273814 39274101 -80470797 + AluJb SINE Alu 11 296 -16 546 223 13 19 chr13 39274318 39274475 -80470423 + AluSg/x SINE Alu 141 296 -16 10566 158 51 22 chr13 39274478 39274746 -80470152 + L1MC3 LINE L1 5666 5925 -1860 2152 124 3 13 chr13 39274746 39275060 -80469838 + AluSq SINE Alu 1 311 -2 10566 158 51 22 chr13 39275060 39276579 -80468319 + L1MC3 LINE L1 5925 7521 -264 2461 81 3 0 chr13 39276579 39276887 -80468011 + AluSp SINE Alu 1 309 -4 10566 158 51 22 chr13 39276887 39277112 -80467786 + L1MC3 LINE L1 7521 7738 -47 287 193 0 18 chr13 39277099 39277156 -80467742 + L1M4 LINE L1 4107 4162 -1984 * 2715 221 66 4 chr13 39277199 39277286 -80467612 + L1M4 LINE L1 4155 4235 -1911 270 0 0 0 chr13 39277286 39277316 -80467582 + (CA)n Simple_repeat Simple_repeat 2 31 0 2715 221 66 4 chr13 39277316 39277942 -80466956 + L1M4 LINE L1 4235 4912 -1234 547 205 26 19 chr13 39277942 39278098 -80466800 + L1MB8 LINE L1 6022 6178 0 690 146 31 39 chr13 39278181 39278311 -80466587 + FLAM_A SINE Alu 1 129 -4 183 42 0 0 chr13 39278354 39278378 -80466520 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2630 220 46 86 chr13 39278400 39279215 -80465683 + L1MC5 LINE L1 6377 7143 -818 2028 105 64 17 chr13 39279215 39279511 -80465387 + AluSg SINE Alu 1 310 0 2630 220 46 86 chr13 39279511 39279944 -80464954 + L1MC5 LINE L1 7143 7592 -369 414 216 0 90 chr13 39279940 39280000 -80464898 + L1MB8 LINE L1 6050 6093 -85 * 2259 96 3 0 chr13 39280000 39280291 -80464607 + AluSc SINE Alu 1 292 -17 414 216 0 90 chr13 39280291 39280364 -80464534 + L1MB8 LINE L1 6093 6171 -7 377 172 115 8 chr13 39280377 39280499 -80464399 + L1MC5 LINE L1 7609 7743 -218 1539 100 5 0 chr13 39280638 39280838 -80464060 + AluSx SINE Alu 1 201 -111 338 164 0 0 chr13 39280838 39280899 -80463999 + AluSx SINE Alu 241 301 0 41 0 0 0 chr13 39281058 39281099 -80463799 + AT_rich Low_complexity Low_complexity 1 41 0 2239 102 0 3 chr13 39281404 39281709 -80463189 + AluSx SINE Alu 1 304 0 312 171 14 0 chr13 39281751 39281821 -80463077 + L1MB8 LINE L1 6108 6178 0 304 324 171 0 chr13 39281966 39282142 -80462756 + MIR SINE MIR 2 207 -55 2424 78 3 13 chr13 39282268 39282576 -80462322 + AluSg SINE Alu 1 305 -5 1592 129 3 129 chr13 39283566 39283906 -80460992 - AluJb SINE Alu 0 312 16 1489 168 0 82 chr13 39285102 39285246 -80459652 + AluJo SINE Alu 6 160 -152 678 73 0 31 chr13 39285246 39285362 -80459536 + L1PA5 LINE L1 6055 6154 0 2271 118 0 0 chr13 39285369 39285665 -80459233 + AluSx SINE Alu 1 296 -16 1489 168 0 82 chr13 39285665 39285828 -80459070 + AluJo SINE Alu 166 295 -17 1979 192 60 12 chr13 39285829 39286245 -80458653 - L1MD3 LINE L1 -58 7937 7502 287 257 14 0 chr13 39286245 39286319 -80458579 - MIR SINE MIR -134 128 54 2304 100 0 0 chr13 39286566 39286857 -80458041 + AluSx SINE Alu 1 291 -21 909 205 45 67 chr13 39286857 39287125 -80457773 - L1MC4a LINE L1 -474 7334 7073 569 266 39 0 chr13 39287172 39287300 -80457598 + MER94 DNA DNA 2 134 0 992 191 79 130 chr13 39288559 39288595 -80456303 + L1MC5 LINE L1 7128 7164 -797 2030 129 13 23 chr13 39288595 39288904 -80455994 + AluSx SINE Alu 1 306 -6 992 191 79 130 chr13 39288904 39289070 -80455828 + L1MC5 LINE L1 7164 7337 -624 2363 109 3 0 chr13 39289070 39289382 -80455516 + AluSq SINE Alu 1 313 0 992 191 79 130 chr13 39289382 39289606 -80455292 + L1MC5 LINE L1 7337 7519 -442 2285 87 28 7 chr13 39289606 39289895 -80455003 + AluSg SINE Alu 2 296 -14 992 191 79 130 chr13 39289895 39290059 -80454839 + L1MC5 LINE L1 7519 7690 -271 2710 159 53 121 chr13 39290115 39290942 -80453956 + L1MD2 LINE L1 5038 5821 -343 924 96 80 0 chr13 39290945 39291070 -80453828 + AluSx SINE Alu 1 135 -178 908 186 6 6 chr13 39291102 39291274 -80453624 + AluSx SINE Alu 110 281 -29 261 196 34 97 chr13 39291450 39291597 -80453301 + L1MD2 LINE L1 5828 5983 -1978 5586 120 76 120 chr13 39291597 39292536 -80452362 + Tigger3b DNA MER2_type 1 869 -2159 209 33 33 0 chr13 39292536 39292566 -80452332 + (CTCA)n Simple_repeat Simple_repeat 4 34 0 5586 120 76 120 chr13 39292566 39292914 -80451984 + Tigger3b DNA MER2_type 869 1231 0 261 196 34 97 chr13 39292914 39292970 -80451928 + L1MD2 LINE L1 5983 6041 -1920 2231 86 0 4 chr13 39292970 39293250 -80451648 + AluSp SINE Alu 29 307 -6 261 196 34 97 chr13 39293250 39293325 -80451573 + L1MD2 LINE L1 6041 7928 -33 265 193 0 36 chr13 39293362 39293445 -80451453 + GA-rich Low_complexity Low_complexity 3 82 0 426 239 0 77 chr13 39294417 39294547 -80450351 + L2 LINE L2 3153 3272 0 382 291 44 44 chr13 39294581 39294763 -80450135 - MER5A DNA MER1_type -1 188 7 2267 123 0 0 chr13 39296024 39296333 -80448565 - AluSx SINE Alu -3 309 1 27 92 0 0 chr13 39296495 39296571 -80448327 + AT_rich Low_complexity Low_complexity 1 76 0 1370 154 128 70 chr13 39297613 39297958 -80446940 - MLT1A1 LTR MaLR 0 365 1 346 252 143 25 chr13 39298140 39298259 -80446639 + MER94 DNA DNA 1 133 -1 244 301 88 0 chr13 39298259 39298372 -80446526 - MIR SINE MIR -12 250 128 1089 180 52 16 chr13 39298820 39299185 -80445713 + MER63 DNA MER1_type 3 442 -619 255 307 114 0 chr13 39299219 39299307 -80445591 + LTR8 LTR ERV1 27 124 -567 1428 198 72 20 chr13 39299348 39299696 -80445202 + MER87 LTR ERV1 174 539 -2 539 218 26 32 chr13 39299698 39299854 -80445044 + MER63 DNA MER1_type 790 944 -118 1709 130 0 112 chr13 39300295 39300651 -80444247 + AluSx SINE Alu 1 312 0 333 182 50 50 chr13 39301817 39301916 -80442982 + MER63D DNA MER1_type 313 411 -650 213 121 0 0 chr13 39306621 39306654 -80438244 + (CA)n Simple_repeat Simple_repeat 2 34 0 2359 93 0 0 chr13 39308647 39308947 -80435951 + AluY SINE Alu 1 300 -11 1858 108 104 7 chr13 39309263 39309542 -80435356 + AluSq SINE Alu 1 306 -7 550 197 126 27 chr13 39309962 39310145 -80434753 + MIR SINE MIR 43 243 -19 309 205 134 55 chr13 39313379 39313506 -80431392 + L2 LINE L2 3132 3268 -4 2327 87 0 7 chr13 39314207 39314506 -80430392 - AluSg SINE Alu -13 297 1 268 233 35 70 chr13 39315203 39315289 -80429609 - MIR SINE MIR -70 192 110 2256 106 0 0 chr13 39315515 39315807 -80429091 + AluSg SINE Alu 1 292 -18 267 325 25 0 chr13 39316652 39316732 -80428166 - MIR3 SINE MIR -19 189 108 739 169 0 0 chr13 39317612 39317736 -80427162 - FLAM_C SINE Alu -17 126 3 2195 86 7 4 chr13 39317858 39318136 -80426762 + AluSc SINE Alu 1 279 -30 186 71 0 0 chr13 39318139 39318167 -80426731 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1533 67 0 0 chr13 39319017 39319211 -80425687 + L1PA5 LINE L1 5960 6153 -1 322 26 0 0 chr13 39322174 39322213 -80422685 + L1PA8 LINE L1 6127 6165 -7 1352 192 0 33 chr13 39323094 39323370 -80421528 + AluJo SINE Alu 1 267 -45 324 336 79 0 chr13 39323998 39324138 -80420760 + MIR SINE MIR 12 162 -100 224 170 19 0 chr13 39325814 39325867 -80419031 + (CAGAA)n Simple_repeat Simple_repeat 2 55 0 252 289 13 0 chr13 39326749 39326825 -80418073 + MER103 DNA DNA 13 89 -77 559 294 20 15 chr13 39328436 39328640 -80416258 + MIR SINE MIR 12 216 -46 12714 120 35 50 chr13 39330118 39332299 -80412599 - Tigger1 DNA MER2_type 0 2418 272 1654 162 0 80 chr13 39332484 39332798 -80412100 + AluJb SINE Alu 1 289 -23 270 0 0 0 chr13 39333486 39333516 -80411382 + (CA)n Simple_repeat Simple_repeat 1 30 0 391 308 140 14 chr13 39334250 39334464 -80410434 - MER112 DNA MER1_type -17 243 3 2027 142 0 3 chr13 39336965 39337260 -80407638 + AluSx SINE Alu 1 294 -18 1975 140 0 17 chr13 39339856 39340149 -80404749 - AluSx SINE Alu -24 288 1 1943 156 0 13 chr13 39341162 39341470 -80403428 - AluJo SINE Alu -8 304 1 414 259 71 0 chr13 39342519 39342631 -80402267 - MIR3 SINE MIR -52 156 37 1887 145 3 7 chr13 39342841 39343124 -80401774 - AluJo SINE Alu -25 287 6 210 200 346 85 chr13 39343473 39343603 -80401295 - MER5A DNA MER1_type 0 189 26 516 174 10 0 chr13 39343612 39343710 -80401188 - L1MA5 LINE L1 0 6300 6202 249 56 111 0 chr13 39343907 39343943 -80400955 - L1MA6 LINE L1 -101 6199 6160 180 0 0 0 chr13 39344081 39344101 -80400797 + (T)n Simple_repeat Simple_repeat 1 20 0 357 235 174 0 chr13 39344628 39344726 -80400172 + MIR SINE MIR 47 161 -101 2357 108 0 9 chr13 39397511 39397826 -80347072 - AluSx SINE Alu 0 312 1 220 316 118 15 chr13 39398069 39398205 -80346693 + L2 LINE L2 2716 2865 -449 204 313 112 45 chr13 39398412 39398546 -80346352 + L2 LINE L2 3125 3267 -5 197 286 143 42 chr13 39398675 39398794 -80346104 - L2 LINE L2 -1 3271 3141 265 341 22 71 chr13 39399008 39399190 -80345708 - MIR3 SINE MIR -17 191 19 338 204 64 30 chr13 39399608 39399749 -80345149 + MLT1H LTR MaLR 250 549 0 1606 190 133 3 chr13 39400948 39401317 -80343581 + Charlie4a DNA MER1_type 5 421 -87 26 0 0 0 chr13 39401872 39401898 -80343000 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr13 39402531 39402555 -80342343 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1690 166 16 7 chr13 39403001 39403308 -80341590 + AluJb SINE Alu 1 310 -2 1623 143 136 10 chr13 39403839 39404140 -80340758 + MER44D DNA MER2_type 1 609 0 840 282 145 28 chr13 39406295 39406466 -80338432 - L2 LINE L2 -3 3310 3161 2009 98 36 0 chr13 39406466 39406740 -80338158 + AluSx SINE Alu 1 284 -28 441 0 0 0 chr13 39406740 39406789 -80338109 + (CATA)n Simple_repeat Simple_repeat 2 50 0 840 282 145 28 chr13 39406789 39407366 -80337532 - L2 LINE L2 -151 3162 2469 2241 83 38 0 chr13 39408375 39408665 -80336233 + AluSp SINE Alu 1 301 -12 1627 148 37 30 chr13 39409289 39409587 -80335311 - AluJb SINE Alu -12 300 1 2097 108 9 32 chr13 39410216 39410531 -80334367 + AluSq SINE Alu 1 308 -5 2233 102 3 0 chr13 39412011 39412306 -80332592 - AluSx SINE Alu -13 299 4 232 298 99 33 chr13 39413863 39413984 -80330914 + MIR SINE MIR 134 262 0 631 266 48 29 chr13 39414794 39415001 -80329897 + L3 LINE CR1 937 1147 -430 1604 141 59 59 chr13 39415031 39415337 -80329561 + AluJo SINE Alu 1 306 -6 198 0 0 0 chr13 39415529 39415551 -80329347 + (A)n Simple_repeat Simple_repeat 1 22 0 423 62 62 0 chr13 39416806 39416871 -80328027 + MER41B LTR ERV1 481 549 -86 200 35 35 0 chr13 39417182 39417211 -80327687 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 805 139 9 0 chr13 39417213 39417328 -80327570 - FLAM_C SINE Alu -17 116 1 587 275 85 19 chr13 39418504 39418762 -80326136 + L1MC4 LINE L1 7501 7775 -267 1272 131 10 5 chr13 39418762 39418961 -80325937 + AluSq SINE Alu 1 200 -113 1829 160 4 0 chr13 39419151 39419432 -80325466 - AluSx SINE Alu -30 282 1 337 200 76 38 chr13 39419796 39419901 -80324997 + MER34 LTR ERV1 434 542 0 28 29 0 0 chr13 39421376 39421411 -80323487 + AT_rich Low_complexity Low_complexity 1 35 0 4435 86 2 9 chr13 39421635 39422193 -80322705 - MER41A LTR ERV1 0 554 1 2068 118 0 60 chr13 39422469 39422800 -80322098 - AluSx SINE Alu -1 311 1 712 205 0 0 chr13 39422823 39422950 -80321948 - FLAM_A SINE Alu 0 142 16 229 153 31 20 chr13 39423365 39423463 -80321435 + (CATATA)n Simple_repeat Simple_repeat 4 102 0 605 109 43 0 chr13 39424015 39424107 -80320791 - AluSg/x SINE Alu -9 303 208 1100 108 13 0 chr13 39424107 39424265 -80320633 - AluSq SINE Alu -153 160 1 2188 113 3 3 chr13 39424694 39424995 -80319903 - AluSg SINE Alu -9 301 1 2065 113 0 78 chr13 39425919 39426254 -80318644 + AluSg1 SINE Alu 1 309 0 2102 111 3 44 chr13 39426777 39427093 -80317805 + AluSx SINE Alu 1 303 -9 1662 163 37 23 chr13 39427358 39427658 -80317240 - AluSx SINE Alu -6 306 3 1824 81 0 13 chr13 39428557 39428793 -80316105 - AluY SINE Alu -15 296 64 1880 146 0 50 chr13 39429034 39429357 -80315541 - AluSx SINE Alu -5 307 1 303 296 95 37 chr13 39430067 39430256 -80314642 - L2 LINE L2 -837 2477 2278 2477 72 0 10 chr13 39430451 39430757 -80314141 + AluY SINE Alu 1 303 -8 2340 90 30 0 chr13 39430767 39431068 -80313830 + AluSg SINE Alu 1 310 0 866 179 0 19 chr13 39432510 39432713 -80312185 + AluSg/x SINE Alu 127 326 0 1875 127 3 68 chr13 39432998 39433320 -80311578 - AluSx SINE Alu -11 301 1 2259 112 3 0 chr13 39433615 39433920 -80310978 + AluSg SINE Alu 1 306 -4 22 35 0 0 chr13 39434926 39434955 -80309943 + AT_rich Low_complexity Low_complexity 1 29 0 2226 72 0 0 chr13 39435716 39435995 -80308903 + AluSc SINE Alu 1 279 -30 386 222 48 56 chr13 39436233 39436359 -80308539 - L1 LINE L1 -1153 4993 4867 2224 136 107 3 chr13 39436359 39436741 -80308157 - MSTC LTR MaLR 0 428 7 2845 102 6 3 chr13 39436741 39437104 -80307794 + THE1B LTR MaLR 1 364 0 519 281 45 30 chr13 39437107 39437374 -80307524 - L1 LINE L1 -1270 4876 4606 2325 90 3 0 chr13 39437379 39437679 -80307219 + AluSq SINE Alu 5 305 -8 324 305 0 0 chr13 39437689 39437784 -80307114 + L1MC4 LINE L1 7770 7864 -178 351 248 64 8 chr13 39437861 39438008 -80306890 + L1MC4 LINE L1 5936 8042 0 536 240 55 7 chr13 39438035 39438181 -80306717 + L1MA10 LINE L1 6175 6327 -7 306 0 0 0 chr13 39438181 39438215 -80306683 + (CA)n Simple_repeat Simple_repeat 2 35 0 210 158 42 0 chr13 39438451 39438499 -80306399 + MIR SINE MIR 97 148 -62 2484 64 3 0 chr13 39438969 39439266 -80305632 - AluSp SINE Alu -15 298 1 1583 144 31 0 chr13 39439324 39439553 -80305345 - MER46A DNA MER2_type 0 236 1 2000 124 13 3 chr13 39440197 39440495 -80304403 + AluSx SINE Alu 1 301 -11 1172 183 8 12 chr13 39441090 39441331 -80303567 + L1MC/D LINE L1 4948 5187 -959 2224 150 136 20 chr13 39441332 39441780 -80303118 + L1MB3 LINE L1 5684 6183 0 2323 104 0 0 chr13 39441814 39442121 -80302777 + AluY SINE Alu 1 307 -4 2622 183 44 18 chr13 39442121 39442618 -80302280 - MST-int LTR MaLR -49 1686 1089 842 196 20 110 chr13 39442609 39442778 -80302120 - L1MC4a LINE L1 -857 6951 6768 * 234 0 0 0 chr13 39442778 39442804 -80302094 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2059 124 0 0 chr13 39442807 39443080 -80301818 - AluSg SINE Alu -30 280 8 842 196 20 110 chr13 39443080 39443151 -80301747 - L1MC4a LINE L1 -1042 6766 6729 1384 121 0 73 chr13 39443152 39443384 -80301514 - AluSg/x SINE Alu -13 299 85 989 99 0 112 chr13 39443384 39443545 -80301353 - AluSq SINE Alu -63 250 108 953 138 0 0 chr13 39443645 39443775 -80301123 - AluSq SINE Alu -182 130 1 2191 133 3 0 chr13 39443786 39444094 -80300804 - AluSx SINE Alu -3 309 1 279 178 0 0 chr13 39444109 39444154 -80300744 - L1MC4a LINE L1 -1086 6722 6678 232 282 219 60 chr13 39444467 39444501 -80300397 + L1MC/D LINE L1 5385 5412 -2396 2247 108 0 0 chr13 39444501 39444825 -80300073 + AluY SINE Alu 1 311 0 232 282 219 60 chr13 39444825 39444905 -80299993 + L1MC/D LINE L1 5412 5478 -2330 2166 132 0 3 chr13 39444905 39445209 -80299689 + AluSx SINE Alu 1 303 -9 232 282 219 60 chr13 39445209 39445357 -80299541 + L1MC/D LINE L1 5478 5601 -2207 246 81 0 0 chr13 39445357 39445394 -80299504 + (TG)n Simple_repeat Simple_repeat 1 37 0 232 282 219 60 chr13 39445394 39445462 -80299436 + L1MC/D LINE L1 5601 5770 -2038 237 281 53 111 chr13 39445493 39445664 -80299234 - L2 LINE L2 -252 3061 2901 184 255 21 0 chr13 39445812 39445859 -80299039 + L2 LINE L2 3265 3312 -1 2652 154 28 9 chr13 39445934 39446394 -80298504 + Charlie4a DNA MER1_type 37 505 -3 1534 252 44 9 chr13 39446598 39447031 -80297867 + L1ME1 LINE L1 5476 5923 -243 8040 33 0 0 chr13 39447036 39448059 -80296839 - L1PA3 LINE L1 0 6155 5133 7869 40 0 1 chr13 39448059 39449002 -80295896 + L1PA3 LINE L1 4220 5161 -985 374 230 82 59 chr13 39449131 39449266 -80295632 + L1MA10 LINE L1 6192 6329 -5 1999 134 3 3 chr13 39449794 39450125 -80294773 - AluSq SINE Alu 0 313 1 26 50 0 0 chr13 39450449 39450489 -80294409 + AT_rich Low_complexity Low_complexity 1 40 0 551 259 129 40 chr13 39450703 39450744 -80294154 + MIR SINE MIR 13 49 -213 2026 140 0 3 chr13 39450744 39451051 -80293847 + AluSx SINE Alu 1 306 0 551 259 129 40 chr13 39451051 39451232 -80293666 + MIR SINE MIR 49 256 -6 1450 186 42 11 chr13 39451678 39451963 -80292935 + AluJb SINE Alu 1 294 -18 2355 119 0 0 chr13 39452101 39452413 -80292485 + AluSx SINE Alu 1 312 0 230 231 100 32 chr13 39452927 39453036 -80291862 - MIR SINE MIR -62 146 40 1960 99 64 7 chr13 39454843 39455126 -80289772 + AluSp SINE Alu 1 299 -14 429 56 0 0 chr13 39455335 39455389 -80289509 - Alu SINE Alu -13 297 244 21 0 0 0 chr13 39457164 39457185 -80287713 + AT_rich Low_complexity Low_complexity 1 21 0 723 275 29 59 chr13 39457191 39457319 -80287579 - L1MC/D LINE L1 -1992 5816 5686 2020 44 48 0 chr13 39457319 39457569 -80287329 + AluY SINE Alu 41 302 -9 723 275 29 59 chr13 39457569 39457713 -80287185 - L1MC/D LINE L1 -2122 5686 5552 316 390 70 6 chr13 39457733 39457905 -80286993 - MIR3 SINE MIR -6 202 20 272 206 41 14 chr13 39457917 39457990 -80286908 - L1ME4a LINE L1 -75 6046 5972 1955 133 11 0 chr13 39458066 39458352 -80286546 + AluSx SINE Alu 1 289 -23 195 69 0 0 chr13 39458357 39458386 -80286512 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 192 97 0 0 chr13 39458455 39458486 -80286412 + (T)n Simple_repeat Simple_repeat 1 31 0 228 211 0 70 chr13 39459245 39459302 -80285596 - L2 LINE L2 -2 3270 3218 385 272 9 0 chr13 39459802 39459916 -80284982 + L1ME4a LINE L1 5716 5830 -291 1799 140 0 26 chr13 39459916 39460188 -80284710 + AluSx SINE Alu 1 265 -47 390 307 8 0 chr13 39461453 39461580 -80283318 - MIR SINE MIR -48 214 87 653 173 136 0 chr13 39462436 39462546 -80282352 + FLAM_A SINE Alu 3 127 -6 1705 120 90 0 chr13 39462556 39462822 -80282076 + AluSx SINE Alu 1 290 -22 2041 114 10 16 chr13 39464237 39464544 -80280354 + AluSx SINE Alu 7 311 -1 361 244 71 62 chr13 39464544 39464688 -80280210 + MIR SINE MIR 41 191 -65 765 169 0 59 chr13 39464691 39464820 -80280078 + AluJo/FLAM SINE Alu 2 124 -188 1928 112 98 4 chr13 39464820 39465097 -80279801 - AluSq SINE Alu -10 303 1 500 174 98 45 chr13 39465220 39465352 -80279546 - MIR SINE MIR -27 235 97 2247 79 0 4 chr13 39465464 39465744 -80279154 + AluY SINE Alu 1 279 -32 539 283 100 12 chr13 39465907 39466147 -80278751 - MIR SINE MIR 0 262 2 2241 93 0 17 chr13 39467214 39467514 -80277384 + AluSq SINE Alu 1 295 -18 827 88 0 0 chr13 39467747 39467849 -80277049 - AluS SINE Alu -211 102 1 2005 124 7 7 chr13 39467850 39468132 -80276766 - AluSq SINE Alu -31 282 1 313 75 57 19 chr13 39468132 39468185 -80276713 + MSTB-int LTR MaLR 1526 1580 0 2442 120 85 22 chr13 39468185 39468517 -80276381 + MSTB LTR MaLR 1 364 -62 2500 85 0 0 chr13 39468517 39468822 -80276076 - AluSx SINE Alu -7 305 1 2442 120 85 22 chr13 39468822 39468890 -80276008 + MSTB LTR MaLR 364 426 0 2650 198 118 31 chr13 39468892 39469576 -80275322 + L1MC4a LINE L1 6944 7708 -100 2046 107 38 0 chr13 39469576 39469865 -80275033 - AluSx SINE Alu -12 300 1 2650 198 118 31 chr13 39469865 39469975 -80274923 + L1MC4a LINE L1 7708 7807 -1 648 102 102 8 chr13 39469994 39470112 -80274786 + L1MA9 LINE L1 6162 6290 -22 27 62 0 0 chr13 39470112 39470160 -80274738 + AT_rich Low_complexity Low_complexity 1 48 0 15595 86 8 2 chr13 39470347 39473151 -80271747 - L1PA7 LINE L1 -1 6153 3332 33483 79 7 10 chr13 39473251 39478658 -80266240 + L1PA5 LINE L1 767 6154 0 2157 121 10 3 chr13 39479417 39479723 -80265175 - AluSg SINE Alu -2 308 1 2277 100 3 3 chr13 39479729 39480040 -80264858 - AluSx SINE Alu 0 312 2 2143 118 10 20 chr13 39480084 39480390 -80264508 - AluSq SINE Alu -10 303 1 975 127 0 0 chr13 39480419 39480553 -80264345 - AluSq/x SINE Alu -179 134 1 234 0 0 0 chr13 39480751 39480777 -80264121 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1174 137 6 0 chr13 39480777 39480953 -80263945 - AluJb SINE Alu -4 308 129 396 0 0 0 chr13 39480977 39481021 -80263877 + (CTTG)n Simple_repeat Simple_repeat 2 45 0 2172 114 0 0 chr13 39481040 39481348 -80263550 - AluSg SINE Alu 0 310 1 1596 92 0 32 chr13 39481372 39481452 -80263446 - AluSc SINE Alu -98 211 130 2273 72 3 62 chr13 39481452 39481773 -80263125 - AluY SINE Alu -7 304 3 1596 92 0 32 chr13 39481773 39481909 -80262989 - AluSc SINE Alu -179 130 2 36 23 0 0 chr13 39482294 39482337 -80262561 + AT_rich Low_complexity Low_complexity 1 43 0 1136 88 0 0 chr13 39482354 39482490 -80262408 - AluSq/x SINE Alu -171 141 6 2223 113 0 3 chr13 39482963 39483264 -80261634 - AluSq SINE Alu -13 300 1 419 293 161 0 chr13 39483632 39483806 -80261092 - MIR SINE MIR 0 262 61 840 160 0 0 chr13 39483881 39484006 -80260892 + FLAM_C SINE Alu 1 125 -18 2870 10 0 0 chr13 39484209 39484518 -80260380 - AluYa5 SINE Alu -2 309 1 879 206 0 0 chr13 39484520 39484680 -80260218 - FRAM SINE Alu -16 160 1 213 276 35 0 chr13 39485224 39485282 -80259616 - L2 LINE L2 -9 3263 3204 2332 122 0 0 chr13 39485507 39485819 -80259079 - AluSx SINE Alu 0 312 1 826 167 17 69 chr13 39486129 39486303 -80258595 + AluJb SINE Alu 137 301 -11 2238 92 31 0 chr13 39486694 39486986 -80257912 - AluSx SINE Alu -11 301 1 4048 185 8 19 chr13 39487042 39487843 -80257055 + L1 LINE L1 4243 5034 -1112 1746 169 10 24 chr13 39487854 39488150 -80256748 + AluJb SINE Alu 1 292 -20 207 162 0 0 chr13 39488150 39488187 -80256711 + G-rich Low_complexity Low_complexity 1 37 0 1317 173 38 21 chr13 39488258 39488495 -80256403 + AluJo SINE Alu 3 243 -69 1771 82 5 0 chr13 39488497 39488716 -80256182 + AluSp SINE Alu 76 295 -18 5007 141 93 38 chr13 39488717 39488810 -80256088 + L1PA16 LINE L1 5183 5269 -897 2167 127 0 0 chr13 39488810 39489101 -80255797 + AluSg SINE Alu 3 293 -17 5007 141 93 38 chr13 39489101 39489451 -80255447 + L1PA16 LINE L1 5269 5598 -568 2316 107 3 3 chr13 39489451 39489759 -80255139 + AluSp SINE Alu 1 308 -5 5007 141 93 38 chr13 39489759 39489923 -80254975 + L1PA16 LINE L1 5598 5751 -415 2150 122 7 0 chr13 39489923 39490217 -80254681 + AluSp SINE Alu 1 296 -17 5007 141 93 38 chr13 39490217 39490541 -80254357 + L1PA16 LINE L1 5751 6157 -9 260 207 216 36 chr13 39490735 39490846 -80254052 - MIR SINE MIR -14 248 118 2125 127 0 3 chr13 39490847 39491146 -80253752 - AluSx SINE Alu -14 298 1 1730 132 69 31 chr13 39491598 39491887 -80253011 + AluJo SINE Alu 1 300 -12 246 32 0 0 chr13 39491933 39491964 -80252934 + (CA)n Simple_repeat Simple_repeat 2 32 0 2488 14 41 7 chr13 39492326 39492616 -80252282 + AluY SINE Alu 1 300 -11 2280 92 7 0 chr13 39492665 39492959 -80251939 + AluSx SINE Alu 1 296 -16 727 203 7 7 chr13 39492973 39493116 -80251782 - AluJb SINE Alu -2 310 168 3825 163 49 57 chr13 39493860 39494702 -80250196 - L1MB8 LINE L1 0 6178 5331 1781 125 121 7 chr13 39494702 39494983 -80249915 - AluSp SINE Alu 0 313 1 1633 146 0 0 chr13 39494984 39495231 -80249667 - AluSx SINE Alu -8 304 58 3825 163 49 57 chr13 39495231 39495353 -80249545 - L1MB8 LINE L1 -846 5332 5207 1621 166 3 3 chr13 39495355 39495638 -80249260 - AluY SINE Alu -12 299 17 389 273 47 16 chr13 39495818 39495946 -80248952 + MLT1J2 LTR MaLR 262 393 -57 13569 21 0 0 chr13 39495952 39498206 -80246692 - L1PA2 LINE L1 0 6155 3902 532 185 267 56 chr13 39498776 39498938 -80245960 + MIR SINE MIR 2 215 -47 2274 79 0 24 chr13 39498938 39499279 -80245619 + AluSx SINE Alu 1 334 0 189 176 88 0 chr13 39499279 39499313 -80245585 + L2 LINE L2 3213 3249 -23 1882 172 33 44 chr13 39499508 39499897 -80245001 - MLT1B LTR MaLR -5 385 1 21 0 0 0 chr13 39500080 39500101 -80244797 + AT_rich Low_complexity Low_complexity 1 21 0 817 188 0 7 chr13 39500313 39500451 -80244447 + AluJo SINE Alu 3 139 -173 2256 111 3 0 chr13 39500455 39500762 -80244136 + AluSg SINE Alu 1 308 -2 27 0 0 0 chr13 39500763 39500790 -80244108 + AT_rich Low_complexity Low_complexity 1 27 0 837 176 0 0 chr13 39500791 39500922 -80243976 + AluSq/x SINE Alu 2 132 -180 2170 89 10 29 chr13 39500924 39501237 -80243661 + AluSx SINE Alu 1 307 -5 2200 108 0 40 chr13 39501239 39501375 -80243523 + AluSq SINE Alu 1 141 -172 2549 41 0 7 chr13 39501375 39501669 -80243229 + AluY SINE Alu 1 292 -19 2200 108 0 40 chr13 39501669 39501856 -80243042 + AluSq SINE Alu 141 311 -2 2154 112 0 3 chr13 39502378 39502673 -80242225 + AluSq SINE Alu 1 294 -19 977 118 0 15 chr13 39502861 39502996 -80241902 - FLAM_C SINE Alu 0 133 1 2012 154 0 3 chr13 39503417 39503722 -80241176 + AluJo SINE Alu 1 304 -8 194 183 83 17 chr13 39504039 39504099 -80240799 - MIR SINE MIR -43 219 156 14347 134 75 113 chr13 39504706 39505910 -80238988 - L1P LINE L1 -2894 3252 2003 2356 87 0 19 chr13 39505910 39506222 -80238676 + AluSg SINE Alu 5 310 0 14347 134 75 113 chr13 39506222 39508400 -80236498 - L1P LINE L1 -4143 2003 1 486 277 77 23 chr13 39508491 39508679 -80236219 + MIR3 SINE MIR 2 208 0 2392 102 0 6 chr13 39508852 39509165 -80235733 - AluSx SINE Alu -1 311 1 1915 160 3 0 chr13 39510270 39510564 -80234334 - AluJo SINE Alu -17 295 1 2602 122 45 47 chr13 39510571 39510919 -80233979 - L1MB4 LINE L1 0 6180 5832 2157 131 3 3 chr13 39510919 39511225 -80233673 - AluSg SINE Alu -4 306 1 2602 122 45 47 chr13 39511225 39511344 -80233554 - L1MB4 LINE L1 -348 5832 5714 1855 107 0 93 chr13 39511738 39512077 -80232821 + AluSx SINE Alu 1 310 0 1979 121 3 3 chr13 39512149 39512478 -80232420 + AluSx SINE Alu 1 329 0 1166 164 50 142 chr13 39512689 39513091 -80231807 + MLT1A1 LTR MaLR 1 365 0 243 347 10 80 chr13 39513191 39513390 -80231508 - L2 LINE L2 -1 3271 3087 270 268 42 0 chr13 39513451 39513522 -80231376 + L2 LINE L2 3199 3272 0 222 243 264 43 chr13 39514097 39514237 -80230661 - MIR SINE MIR -61 201 31 216 0 0 0 chr13 39514296 39514320 -80230578 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1436 134 21 134 chr13 39514323 39514659 -80230239 - AluSc SINE Alu -1 298 1 844 225 70 65 chr13 39514790 39515024 -80229874 - L1MEc LINE L1 -864 5351 5113 2292 109 0 10 chr13 39515024 39515326 -80229572 - AluSx SINE Alu -13 299 1 844 225 70 65 chr13 39515326 39515505 -80229393 - L1MEc LINE L1 -1102 5113 4936 2224 136 107 3 chr13 39515505 39515887 -80229011 - MSTC LTR MaLR 0 428 7 2845 102 6 3 chr13 39515887 39516250 -80228648 + THE1B LTR MaLR 1 364 0 716 272 39 58 chr13 39516253 39516521 -80228377 - L1MEc LINE L1 -1270 4945 4684 2148 116 7 0 chr13 39516521 39516814 -80228084 + AluSq SINE Alu 2 296 -17 716 272 39 58 chr13 39516814 39516909 -80227989 - L1MEc LINE L1 -1531 4684 4589 1879 154 7 3 chr13 39516944 39517230 -80227668 - AluSx SINE Alu -25 287 1 323 190 0 25 chr13 39517306 39517385 -80227513 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 2226 91 3 3 chr13 39517385 39517672 -80227226 - AluSc SINE Alu -22 287 1 380 179 77 17 chr13 39517675 39517792 -80227106 - L1MEc LINE L1 -1701 4514 4391 1440 233 106 58 chr13 39517894 39518392 -80226506 - MLT1E LTR MaLR -2 591 70 740 289 260 17 chr13 39518443 39519100 -80225798 - L1MEc LINE L1 -1988 4227 3411 796 224 21 0 chr13 39519173 39519316 -80225582 - FRAM SINE Alu -30 146 1 1387 150 109 19 chr13 39519630 39519897 -80225001 + AluJb SINE Alu 1 291 -21 21 0 0 0 chr13 39519921 39519942 -80224956 + AT_rich Low_complexity Low_complexity 1 21 0 2355 102 0 3 chr13 39519993 39520298 -80224600 - AluSx SINE Alu -8 304 1 620 271 201 24 chr13 39520305 39520807 -80224091 - L1MEc LINE L1 -3241 2974 2384 1962 125 11 0 chr13 39520885 39521202 -80223696 + AluSq SINE Alu 1 320 0 289 73 0 0 chr13 39521372 39521413 -80223485 - LTR60 LTR ERV1 0 586 546 240 250 161 27 chr13 39521472 39521584 -80223314 - L1MEc LINE L1 -4653 1743 1617 319 200 15 0 chr13 39521651 39521716 -80223182 - L1MEc LINE L1 -3435 2780 2715 1931 159 0 3 chr13 39521731 39522033 -80222865 - AluSx SINE Alu -11 301 1 365 263 5 54 chr13 39522159 39522345 -80222553 + C-rich Low_complexity Low_complexity 2 178 0 2318 41 44 7 chr13 39523142 39523436 -80221462 + AluY SINE Alu 1 305 -6 2163 93 0 23 chr13 39523443 39523753 -80221145 + AluSg SINE Alu 1 303 -7 386 238 87 0 chr13 39524053 39524179 -80220719 - L1MEc LINE L1 -5282 923 787 2104 132 3 7 chr13 39524308 39524612 -80220286 + AluSx SINE Alu 1 303 -9 1685 192 7 0 chr13 39524612 39524903 -80219995 - AluJo SINE Alu -19 293 1 201 268 0 0 chr13 39525089 39525145 -80219753 + (TA)n Simple_repeat Simple_repeat 2 57 0 471 290 50 73 chr13 39525787 39525839 -80219059 + MIR SINE MIR 3 55 -207 2319 97 0 3 chr13 39525839 39526138 -80218760 - AluSx SINE Alu -14 298 1 471 290 50 73 chr13 39526138 39526344 -80218554 + MIR SINE MIR 55 255 -7 1880 146 4 11 chr13 39526349 39526629 -80218269 + AluSx SINE Alu 1 278 -34 2298 95 3 0 chr13 39526674 39526968 -80217930 - AluSq SINE Alu -18 295 1 687 226 120 20 chr13 39526994 39527088 -80217810 + L1MDa LINE L1 2348 2431 -4253 2109 120 31 0 chr13 39527088 39527379 -80217519 + AluJb SINE Alu 1 300 -12 687 226 120 20 chr13 39527379 39527398 -80217500 + L1MDa LINE L1 2431 2447 -4237 2214 106 3 37 chr13 39527398 39527719 -80217179 + AluSg SINE Alu 1 310 0 687 226 120 20 chr13 39527719 39527973 -80216925 + L1MDa LINE L1 2447 2792 -3892 183 42 0 0 chr13 39528027 39528051 -80216847 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 528 346 49 11 chr13 39528220 39528486 -80216412 + HAL1 LINE L1 618 893 -1614 421 337 34 17 chr13 39528487 39528561 -80216337 + MLT1J LTR MaLR 3 74 -335 1782 154 10 29 chr13 39528561 39528867 -80216031 + AluJo SINE Alu 1 300 -12 421 337 34 17 chr13 39528867 39529001 -80215897 + MLT1J LTR MaLR 74 174 -235 326 116 0 0 chr13 39529011 39529054 -80215844 + Alu SINE Alu 1 43 -265 2522 81 3 0 chr13 39529104 39529413 -80215485 - AluSq SINE Alu -3 310 1 522 239 64 32 chr13 39529414 39529753 -80215145 + HAL1 LINE L1 1055 1496 -1011 1480 173 48 17 chr13 39529796 39530091 -80214807 + AluJb SINE Alu 1 304 -8 870 175 0 0 chr13 39530092 39530229 -80214669 + AluSg/x SINE Alu 137 273 -39 435 275 222 44 chr13 39530229 39530684 -80214214 + HAL1 LINE L1 1531 2066 -441 1788 145 25 7 chr13 39530728 39531011 -80213887 + AluJo SINE Alu 1 288 -24 43593 33 23 2 chr13 39531029 39537055 -80207843 + L1PA2 LINE L1 1 6151 -4 311 218 0 13 chr13 39537115 39537193 -80207705 + HAL1 LINE L1 2129 2205 -302 248 245 177 27 chr13 39537218 39537365 -80207533 + HAL1 LINE L1 2309 2477 -30 545 290 119 10 chr13 39537418 39537802 -80207096 + L1MC4a LINE L1 5188 5614 -630 439 245 54 44 chr13 39537863 39537998 -80206900 + L1MC4a LINE L1 5750 5882 -239 414 0 0 0 chr13 39537998 39538044 -80206854 + (CA)n Simple_repeat Simple_repeat 2 47 0 439 245 54 44 chr13 39538044 39538169 -80206729 + L1MC4a LINE L1 5882 6016 -105 29 28 0 0 chr13 39538243 39538279 -80206619 + AT_rich Low_complexity Low_complexity 1 36 0 6472 121 4 0 chr13 39538950 39539139 -80205759 + L1PA15 LINE L1 4928 5115 -1050 2123 117 0 13 chr13 39539139 39539439 -80205459 + AluSq SINE Alu 1 296 -17 6472 121 4 0 chr13 39539439 39540481 -80204417 + L1PA15 LINE L1 5115 6165 0 1818 100 3 147 chr13 39540662 39541023 -80203875 - AluSx SINE Alu -3 309 1 2145 137 0 0 chr13 39541025 39541331 -80203567 - AluSx SINE Alu -6 306 1 2166 103 3 0 chr13 39541340 39541661 -80203237 - AluSq SINE Alu 0 322 1 595 246 15 20 chr13 39541661 39541856 -80203042 - L1M4 LINE L1 -864 5282 5089 482 225 8 62 chr13 39542976 39543105 -80201793 - MIR SINE MIR -54 208 87 1201 138 0 6 chr13 39543176 39543357 -80201541 - AluSg/x SINE Alu 0 310 131 285 242 110 11 chr13 39543473 39543564 -80201334 - MIR SINE MIR -64 144 45 1834 99 134 0 chr13 39543704 39543966 -80200932 + AluSx SINE Alu 1 297 -5 2256 108 13 0 chr13 39544257 39544562 -80200336 - AluSq SINE Alu -4 309 1 279 250 125 11 chr13 39545828 39545916 -80198982 - MIR SINE MIR -16 246 149 2400 232 26 42 chr13 39546014 39546655 -80198243 + L1ME1 LINE L1 5531 6161 -5 332 43 22 0 chr13 39546851 39546897 -80198001 + (TA)n Simple_repeat Simple_repeat 2 48 0 353 322 41 7 chr13 39546899 39547045 -80197853 - L1ME LINE L1 -356 5765 5615 321 266 159 18 chr13 39547433 39547546 -80197352 - MIR SINE MIR -10 252 124 188 293 67 40 chr13 39547546 39547621 -80197277 - MIR3 SINE MIR -129 79 3 294 298 0 12 chr13 39547725 39547809 -80197089 - L2 LINE L2 0 3313 3231 2290 106 13 0 chr13 39548130 39548432 -80196466 - AluSq SINE Alu -7 306 1 1180 239 19 0 chr13 39548845 39549105 -80195793 - AluJo SINE Alu -9 303 39 1974 158 87 14 chr13 39549623 39549991 -80194907 + LTR57 LTR ERVL 17 411 0 2195 119 0 16 chr13 39550855 39551166 -80193732 + AluSq SINE Alu 1 306 -7 217 243 0 0 chr13 39551499 39551536 -80193362 - L2 LINE L2 -12 3260 3224 * 424 289 98 5 chr13 39551504 39551698 -80193200 - MIR SINE MIR -11 251 40 34 55 0 0 chr13 39551880 39551935 -80192963 + AT_rich Low_complexity Low_complexity 1 55 0 1617 115 0 0 chr13 39553549 39553775 -80191123 - AluY SINE Alu -8 303 78 2064 44 4 4 chr13 39553875 39554123 -80190775 + AluY SINE Alu 52 299 -12 1121 192 5 0 chr13 39554123 39554321 -80190577 - AluJo SINE Alu -113 199 1 2269 100 3 25 chr13 39555118 39555437 -80189461 + AluSx SINE Alu 1 312 0 566 173 209 0 chr13 39555791 39555930 -80188968 + L1ME2 LINE L1 5726 5893 -273 1224 131 11 11 chr13 39555936 39556119 -80188779 + AluSg/x SINE Alu 120 302 -8 607 260 130 18 chr13 39556119 39556342 -80188556 + L1ME2 LINE L1 5907 6154 -10 318 305 39 8 chr13 39556369 39556497 -80188401 + L1MC5 LINE L1 7782 7913 -48 729 216 0 8 chr13 39556595 39556729 -80188169 - FLAM_A SINE Alu 0 133 1 1651 155 34 7 chr13 39556955 39557252 -80187646 + AluJo SINE Alu 1 305 -7 452 205 39 71 chr13 39557760 39557887 -80187011 + L1ME LINE L1 5547 5669 -452 207 100 0 0 chr13 39557887 39557917 -80186981 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 1695 162 47 14 chr13 39557922 39558218 -80186680 + AluJb SINE Alu 1 306 -6 697 275 74 89 chr13 39558240 39558434 -80186464 + L2 LINE L2 2915 3110 -203 1659 143 0 8 chr13 39558434 39558678 -80186220 - AluJo SINE Alu -50 262 21 697 275 74 89 chr13 39558678 39558745 -80186153 + L2 LINE L2 3110 3176 -137 531 0 0 0 chr13 39558745 39558804 -80186094 + (TG)n Simple_repeat Simple_repeat 2 60 0 697 275 74 89 chr13 39558804 39558945 -80185953 + L2 LINE L2 3176 3312 -1 1079 288 76 3 chr13 39559571 39559915 -80184983 + MLT1G1 LTR MaLR 5 373 -222 373 237 40 0 chr13 39560043 39560119 -80184779 + MER2 DNA MER2_type 267 345 0 584 252 15 0 chr13 39560125 39560260 -80184638 + MER119 DNA MER1_type 170 306 -277 * 1157 202 185 34 chr13 39560250 39560607 -80184291 + MLT1G3 LTR MaLR 110 520 -10 2133 118 0 7 chr13 39561974 39562278 -80182620 - AluSx SINE Alu -10 302 1 1665 93 5 0 chr13 39562846 39563060 -80181838 - AluSp SINE Alu -18 295 81 233 331 237 0 chr13 39563102 39563241 -80181657 - MIR SINE MIR -12 250 79 321 322 0 0 chr13 39564020 39564110 -80180788 - L2 LINE L2 -32 3281 3192 1534 114 199 4 chr13 39564224 39564470 -80180428 - AluJb SINE Alu -8 294 1 554 206 56 32 chr13 39564490 39564616 -80180282 - MER5A DNA MER1_type -44 145 17 2059 116 4 0 chr13 39564880 39565157 -80179741 + AluSg SINE Alu 1 278 -32 432 0 0 0 chr13 39565158 39565206 -80179692 + (TA)n Simple_repeat Simple_repeat 2 49 0 206 286 43 0 chr13 39566581 39566651 -80178247 + MIR SINE MIR 46 118 -90 2185 82 0 58 chr13 39567281 39567426 -80177472 + AluSx SINE Alu 1 153 -159 237 33 0 0 chr13 39567426 39567456 -80177442 + (CA)n Simple_repeat Simple_repeat 2 31 0 2185 82 0 58 chr13 39567456 39567638 -80177260 + AluSx SINE Alu 153 309 -3 2112 114 3 0 chr13 39567650 39567939 -80176959 + AluSx SINE Alu 5 294 -18 1354 145 200 14 chr13 39568336 39568728 -80176170 - LTR54B LTR ERV1 0 510 8 2007 143 3 0 chr13 39568783 39569076 -80175822 - AluSx SINE Alu -18 294 1 281 268 37 12 chr13 39569078 39569160 -80175738 - L1ME3A LINE L1 -53 6117 6034 1084 157 24 43 chr13 39569674 39569884 -80175014 + AluJb SINE Alu 107 312 0 595 231 164 29 chr13 39570273 39570511 -80174387 - MLT1H1 LTR MaLR 0 555 286 1562 178 4 15 chr13 39571868 39572137 -80172761 + AluJb SINE Alu 32 297 -15 189 319 125 48 chr13 39573331 39573579 -80171319 + L2 LINE L2 2898 3164 -149 * 312 289 70 18 chr13 39573569 39573683 -80171215 - L2 LINE L2 -1 3271 3152 612 225 0 26 chr13 39573697 39573848 -80171050 + L2 LINE L2 3166 3312 -1 489 158 0 12 chr13 39573875 39573957 -80170941 + FLAM_A SINE Alu 44 124 -18 581 257 93 51 chr13 39574104 39574215 -80170683 - MIR SINE MIR 0 262 157 2236 104 0 16 chr13 39574215 39574522 -80170376 - AluSx SINE Alu -10 302 1 581 257 93 51 chr13 39574522 39574647 -80170251 - MIR SINE MIR -105 157 16 1757 146 0 76 chr13 39575186 39575502 -80169396 + AluJo SINE Alu 1 292 -20 21 0 0 0 chr13 39575502 39575523 -80169375 + AT_rich Low_complexity Low_complexity 1 21 0 236 30 30 0 chr13 39575986 39576019 -80168879 + (GA)n Simple_repeat Simple_repeat 1 34 0 1764 155 26 4 chr13 39576191 39576462 -80168436 + AluJo SINE Alu 3 279 -33 300 222 120 26 chr13 39576568 39576685 -80168213 + L2 LINE L2 2841 2968 -304 754 295 83 58 chr13 39576697 39577236 -80167662 + LTR67 LTR ERVL 2 554 -3 192 342 86 70 chr13 39577392 39577579 -80167319 + L2 LINE L2 3071 3260 -12 776 232 97 56 chr13 39577814 39577915 -80166983 + MLT1L LTR MaLR 41 136 -479 1376 228 66 9 chr13 39577915 39578235 -80166663 + MER58B DNA MER1_type 1 338 -3 776 232 97 56 chr13 39578235 39578473 -80166425 + MLT1L LTR MaLR 136 394 -221 299 207 17 17 chr13 39578504 39578562 -80166336 + MLT1L LTR MaLR 467 524 -91 1844 149 14 3 chr13 39578586 39578881 -80166017 + AluJo SINE Alu 1 298 -14 21 36 0 0 chr13 39579088 39579116 -80165782 + AT_rich Low_complexity Low_complexity 1 28 0 232 258 32 0 chr13 39579145 39579207 -80165691 + CT-rich Low_complexity Low_complexity 6 69 0 23 0 0 0 chr13 39579341 39579364 -80165534 + AT_rich Low_complexity Low_complexity 1 23 0 1959 142 38 0 chr13 39579370 39579686 -80165212 + L1MA5 LINE L1 5973 6300 0 2038 94 0 18 chr13 39579816 39580092 -80164806 - AluSx SINE Alu -2 310 40 2305 102 0 0 chr13 39580561 39580856 -80164042 - AluSx SINE Alu -17 295 1 1168 105 6 6 chr13 39581131 39581293 -80163605 - AluSg/x SINE Alu -22 287 126 1394 77 0 11 chr13 39581394 39581576 -80163322 + AluSg/x SINE Alu 120 299 -11 210 290 204 21 chr13 39582099 39582192 -80162706 - MIR3 SINE MIR -84 124 15 1387 134 103 65 chr13 39582204 39582389 -80162509 - AluJo SINE Alu -10 302 101 4206 128 14 76 chr13 39582389 39583126 -80161772 + LTR8 LTR ERV1 1 691 0 1387 134 103 65 chr13 39583126 39583231 -80161667 - AluJo SINE Alu -211 101 1 2333 104 3 3 chr13 39583605 39583914 -80160984 + AluSx SINE Alu 3 311 -1 282 29 0 0 chr13 39583979 39584014 -80160884 + (TG)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr13 39584013 39584035 -80160863 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 827 196 28 0 chr13 39584041 39584169 -80160729 - AluJo SINE Alu -44 268 134 2180 112 6 13 chr13 39584169 39584482 -80160416 - AluSx SINE Alu -1 311 1 827 196 28 0 chr13 39584482 39584496 -80160402 - AluJo SINE Alu -178 134 122 398 271 90 115 chr13 39584780 39585457 -80159441 - L1M2 LINE L1 -5721 1128 507 2401 62 7 3 chr13 39586006 39586311 -80158587 - AluSp SINE Alu -7 306 1 236 240 79 41 chr13 39586594 39586707 -80158191 + MIR SINE MIR 24 144 -64 334 0 21 21 chr13 39586726 39586773 -80158125 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2123 116 0 3 chr13 39586789 39587081 -80157817 - AluSg SINE Alu -19 291 1 288 323 0 21 chr13 39587594 39587687 -80157211 + MER5A DNA MER1_type 68 158 -31 445 271 129 13 chr13 39587722 39587877 -80157021 + MER5A DNA MER1_type 8 180 -9 21 0 0 0 chr13 39588015 39588036 -80156862 + AT_rich Low_complexity Low_complexity 1 21 0 1963 197 21 0 chr13 39588709 39589049 -80155849 + MER7A DNA MER2_type 1 345 -1 2423 81 3 0 chr13 39589483 39589781 -80155117 + AluSp SINE Alu 1 299 -14 393 314 39 39 chr13 39591200 39591404 -80153494 - MIR3 SINE MIR 0 208 5 2050 133 17 0 chr13 39593427 39593720 -80151178 + AluSx SINE Alu 1 298 -14 305 280 197 0 chr13 39594041 39594173 -80150725 - MIR SINE MIR -25 237 80 805 169 7 7 chr13 39594793 39594929 -80149969 + AluJo SINE Alu 1 136 -176 2021 139 16 7 chr13 39596375 39596684 -80148214 + AluJb SINE Alu 1 312 0 197 279 78 62 chr13 39596812 39596941 -80147957 - MIR SINE MIR -54 208 78 212 154 39 58 chr13 39597175 39597227 -80147671 + L2 LINE L2 3220 3270 -2 2369 68 7 3 chr13 39598003 39598296 -80146602 - AluSc SINE Alu -15 294 1 299 233 226 15 chr13 39598384 39598517 -80146381 + MER20B DNA MER1_type 29 189 -594 1762 116 105 0 chr13 39598646 39598913 -80145985 - AluSx SINE Alu -17 295 1 1436 200 75 8 chr13 39599433 39599739 -80145159 - MLT1A2 LTR MaLR 0 593 55 429 303 69 6 chr13 39599775 39599950 -80144948 + MIR SINE MIR 20 205 -57 2410 69 0 29 chr13 39599968 39600274 -80144624 - AluY SINE Alu -14 297 1 898 207 12 6 chr13 39600283 39600447 -80144451 - FAM SINE Alu -10 165 1 447 217 40 63 chr13 39601590 39601762 -80143136 - L1ME3A LINE L1 -1 6163 5996 2493 63 7 7 chr13 39604076 39604379 -80140519 + AluY SINE Alu 1 303 -8 2306 93 0 13 chr13 39605587 39605887 -80139011 - AluSx SINE Alu -16 296 1 2456 83 0 0 chr13 39606633 39606934 -80137964 + AluSg SINE Alu 1 301 -9 873 294 16 13 chr13 39608223 39608536 -80136362 + L1PA16 LINE L1 2 315 -7266 240 682 0 0 chr13 39608539 39608696 -80136202 + C-rich Low_complexity Low_complexity 1 157 0 14784 224 39 26 chr13 39608710 39612416 -80132482 + L1PA16 LINE L1 320 4929 -2675 2158 108 10 3 chr13 39612416 39612712 -80132186 + AluSg SINE Alu 1 298 -12 14784 224 39 26 chr13 39612712 39615411 -80129487 + L1PA16 LINE L1 4929 7591 -13 1912 155 10 13 chr13 39616572 39616881 -80128017 + AluJb SINE Alu 1 308 -4 254 222 16 0 chr13 39617645 39617708 -80127190 + (TA)n Simple_repeat Simple_repeat 2 65 0 2242 96 17 0 chr13 39618110 39618403 -80126495 - AluSc SINE Alu -11 298 1 2592 48 0 16 chr13 39618408 39618717 -80126181 - AluY SINE Alu -7 304 1 916 50 117 0 chr13 39618853 39618973 -80125925 + MER85 DNA T2_type 4 137 -2 3003 196 44 7 chr13 39620681 39621277 -80123621 - MER54A LTR ERVL 0 901 284 893 132 0 0 chr13 39621277 39621398 -80123500 + FRAM SINE Alu 28 148 -28 2039 101 11 0 chr13 39621398 39621676 -80123222 - AluSp SINE Alu -16 297 17 23 0 0 0 chr13 39621676 39621699 -80123199 + AT_rich Low_complexity Low_complexity 1 23 0 21 119 0 0 chr13 39621780 39621906 -80122992 + AT_rich Low_complexity Low_complexity 1 126 0 225 94 0 0 chr13 39622319 39622351 -80122547 + (TG)n Simple_repeat Simple_repeat 1 32 0 2275 114 0 0 chr13 39622501 39622809 -80122089 - AluSc SINE Alu -1 308 1 23 78 0 0 chr13 39622836 39622887 -80122011 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr13 39622995 39623023 -80121875 + AT_rich Low_complexity Low_complexity 1 28 0 2394 103 3 0 chr13 39623581 39623893 -80121005 + AluSp SINE Alu 1 313 0 670 193 0 6 chr13 39623916 39624157 -80120741 + AluJ SINE Alu 2 295 -17 43819 32 23 1 chr13 39624164 39630212 -80114686 + L1PA2 LINE L1 3 6155 0 287 241 143 9 chr13 39630503 39630615 -80114283 - MIR SINE MIR -55 207 81 220 362 103 9 chr13 39630704 39630936 -80113962 - L2 LINE L2 -668 2646 2393 483 348 17 6 chr13 39631401 39631579 -80113319 + MER5A DNA MER1_type 7 186 -3 2236 132 0 7 chr13 39632323 39632633 -80112265 + AluSx SINE Alu 1 308 -4 261 357 94 22 chr13 39632724 39632948 -80111950 - L3b LINE CR1 -219 1364 1125 26740 57 5 0 chr13 39633076 39637212 -80107686 + L1PA6 LINE L1 1997 6149 -5 9709 200 21 44 chr13 39637206 39637786 -80107112 + L1 LINE L1 2920 3512 -2634 * 2246 106 3 3 chr13 39637786 39638088 -80106810 + AluSg SINE Alu 1 302 -8 9709 200 21 44 chr13 39638088 39638604 -80106294 + L1 LINE L1 3512 4038 -2108 2167 120 7 0 chr13 39638604 39638903 -80105995 + AluSx SINE Alu 1 301 -11 9709 200 21 44 chr13 39638903 39640335 -80104563 + L1 LINE L1 4038 5392 -754 1375 124 27 0 chr13 39640330 39640555 -80104343 + L1PA16 LINE L1 5602 5832 -334 * 327 136 0 34 chr13 39640565 39640624 -80104274 + L1P4 LINE L1 5778 5834 -332 2107 158 5 23 chr13 39640632 39640690 -80104208 + L1PA16 LINE L1 5778 5836 -330 2416 89 0 0 chr13 39640690 39640992 -80103906 + AluSq SINE Alu 3 304 -9 2107 158 5 23 chr13 39640992 39641319 -80103579 + L1PA16 LINE L1 5836 6156 -10 737 278 36 26 chr13 39641409 39641718 -80103180 + L1ME LINE L1 3837 4148 -1998 2693 258 87 105 chr13 39641936 39643291 -80101607 + L1ME LINE L1 2577 3955 -2207 2005 138 16 0 chr13 39643291 39643596 -80101302 - AluSx SINE Alu -2 310 1 2693 258 87 105 chr13 39643596 39643628 -80101270 + L1ME LINE L1 3955 3986 -2176 324 0 0 0 chr13 39643628 39643664 -80101234 + (CA)n Simple_repeat Simple_repeat 2 37 0 2693 258 87 105 chr13 39643664 39644007 -80100891 + L1ME LINE L1 3986 4334 -1828 905 137 0 0 chr13 39644007 39644131 -80100767 + AluJb SINE Alu 168 291 -21 2693 258 87 105 chr13 39644131 39645460 -80099438 + L1ME LINE L1 4334 5705 -457 2246 121 0 0 chr13 39645460 39645758 -80099140 + AluSx SINE Alu 1 298 -14 2693 258 87 105 chr13 39645758 39645802 -80099096 + L1ME LINE L1 5705 5748 -414 393 244 138 8 chr13 39645842 39646088 -80098810 + L1ME LINE L1 4415 4692 -1454 555 292 113 52 chr13 39646134 39646460 -80098438 + L1ME LINE L1 4813 5176 -970 1871 165 0 7 chr13 39646460 39646757 -80098141 + AluJo SINE Alu 3 297 -15 555 292 113 52 chr13 39646757 39646889 -80098009 + L1ME LINE L1 5176 5299 -847 350 169 26 13 chr13 39647206 39647283 -80097615 - MER116 DNA Mariner 0 80 3 5754 133 55 15 chr13 39647807 39648997 -80095901 + L1MA8 LINE L1 4770 6029 -262 2247 108 10 3 chr13 39648997 39649302 -80095596 - AluSq SINE Alu -6 307 1 5754 133 55 15 chr13 39649302 39649576 -80095322 + L1MA8 LINE L1 6029 6291 0 315 276 31 0 chr13 39649706 39649804 -80095094 + CT-rich Low_complexity Low_complexity 2 102 0 24 32 0 0 chr13 39650038 39650069 -80094829 + AT_rich Low_complexity Low_complexity 1 31 0 216 228 0 0 chr13 39651707 39651764 -80093134 + (TA)n Simple_repeat Simple_repeat 1 57 0 430 291 189 31 chr13 39652425 39652807 -80092091 + L1ME LINE L1 5320 5761 -360 480 176 0 0 chr13 39652862 39652964 -80091934 + (TA)n Simple_repeat Simple_repeat 1 102 0 2536 59 0 3 chr13 39652964 39653270 -80091628 - AluY SINE Alu -6 305 1 2346 104 0 3 chr13 39653281 39653589 -80091309 - AluSq SINE Alu -6 307 1 188 149 21 0 chr13 39653773 39653820 -80091078 + (TA)n Simple_repeat Simple_repeat 1 48 0 883 186 127 51 chr13 39655100 39655337 -80089561 + AluJo SINE Alu 49 303 -9 279 231 39 13 chr13 39655822 39655900 -80088998 + MLT1H LTR MaLR 4 83 -466 2902 249 108 21 chr13 39656121 39656699 -80088199 + L1M4 LINE L1 3670 4196 -1950 1405 160 103 39 chr13 39656699 39656980 -80087918 + AluJo SINE Alu 1 299 -13 2902 249 108 21 chr13 39656980 39657260 -80087638 + L1M4 LINE L1 4196 4450 -1696 324 94 0 0 chr13 39657260 39657313 -80087585 + (TG)n Simple_repeat Simple_repeat 2 54 0 2902 249 108 21 chr13 39657313 39657692 -80087206 + L1M4 LINE L1 4450 5016 -1130 335 208 42 10 chr13 39657694 39657790 -80087108 + L1ME3 LINE L1 6062 6160 -2 234 255 0 0 chr13 39657797 39657848 -80087050 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2811 83 20 0 chr13 39657864 39658259 -80086639 - L1PA11 LINE L1 -3 6171 5769 526 94 249 0 chr13 39659247 39659360 -80085538 - L1M2 LINE L1 -376 5787 5661 347 132 0 0 chr13 39659372 39659425 -80085473 - AluSg SINE Alu -215 85 33 204 40 0 0 chr13 39659644 39659669 -80085229 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 42654 36 22 1 chr13 39659857 39665884 -80079014 - L1PA3 LINE L1 0 6155 1 21 57 0 0 chr13 39667238 39667273 -80077625 + AT_rich Low_complexity Low_complexity 1 35 0 1235 195 10 70 chr13 39667384 39667686 -80077212 + AluJo SINE Alu 13 296 -16 241 293 0 13 chr13 39667687 39667762 -80077136 + L1PA12 LINE L1 1 74 -7507 1091 137 36 0 chr13 39717779 39717947 -80026951 - AluSg/x SINE Alu -10 300 127 930 188 6 29 chr13 39718515 39718685 -80026213 + FRAM SINE Alu 1 166 0 21 71 0 0 chr13 39719448 39719490 -80025408 + AT_rich Low_complexity Low_complexity 1 42 0 263 227 45 15 chr13 39719549 39719615 -80025283 - L2 LINE L2 -6 3307 3240 300 263 132 26 chr13 39719883 39720035 -80024863 - MIR SINE MIR 0 262 95 324 309 24 42 chr13 39720138 39720306 -80024592 + MIR SINE MIR 68 232 -30 545 227 106 7 chr13 39720360 39720501 -80024397 + MIR SINE MIR 90 244 -18 2459 67 7 0 chr13 39720836 39721133 -80023765 + AluY SINE Alu 1 299 -12 180 0 0 0 chr13 39721193 39721213 -80023685 + (CATTC)n Simple_repeat Simple_repeat 5 24 0 2090 125 0 3 chr13 39721481 39721770 -80023128 + AluSg SINE Alu 2 289 -21 24 85 0 0 chr13 39721849 39721908 -80022990 + AT_rich Low_complexity Low_complexity 1 59 0 279 0 0 0 chr13 39722197 39722228 -80022670 + (TCTCCC)n Simple_repeat Simple_repeat 1 31 0 5802 58 21 53 chr13 39722228 39723072 -80021826 + SVA Other Other 50 866 -520 1084 91 63 14 chr13 39723100 39723321 -80021577 + SVA Other Other 635 866 -520 2100 122 0 16 chr13 39723534 39723837 -80021061 - AluSx SINE Alu -14 298 1 558 318 76 14 chr13 39724066 39724289 -80020609 + L2 LINE L2 2805 3041 -272 2486 68 7 0 chr13 39725772 39726080 -80018818 + AluSg SINE Alu 1 310 0 279 0 0 0 chr13 39726082 39726113 -80018785 + (TA)n Simple_repeat Simple_repeat 2 32 0 1416 243 106 63 chr13 39726608 39727365 -80017533 - L1M4 LINE L1 -1353 4793 3883 35 41 0 0 chr13 39727365 39727414 -80017484 + AT_rich Low_complexity Low_complexity 1 49 0 1884 178 152 8 chr13 39727477 39727871 -80017027 - LTR32 LTR ERVL -7 464 14 1902 141 14 0 chr13 39727999 39728290 -80016608 + AluSx SINE Alu 1 295 -17 1774 235 148 28 chr13 39728300 39728462 -80016436 + L1ME3 LINE L1 5419 5560 -602 2803 146 26 2 chr13 39728462 39728879 -80016019 - MSTA LTR MaLR -1 427 1 1774 235 148 28 chr13 39728879 39729349 -80015549 + L1ME3 LINE L1 5560 6127 -35 1523 154 61 39 chr13 39729351 39729657 -80015241 + AluJo SINE Alu 3 314 0 653 164 52 177 chr13 39730318 39730468 -80014430 + L1M4 LINE L1 4339 4506 -1640 1986 107 4 0 chr13 39730468 39730740 -80014158 + AluSp SINE Alu 41 313 0 653 164 52 177 chr13 39730740 39730782 -80014116 + L1M4 LINE L1 4506 4552 -1594 2402 43 3 10 chr13 39730782 39731083 -80013815 + AluY SINE Alu 1 299 -12 653 164 52 177 chr13 39731083 39731199 -80013699 + L1M4 LINE L1 4552 4609 -1537 625 149 16 58 chr13 39731205 39731326 -80013572 + FLAM_A SINE Alu 22 137 -5 236 160 0 40 chr13 39731326 39731376 -80013522 + L1M4 LINE L1 4604 4651 -1495 2346 96 0 0 chr13 39731382 39731684 -80013214 + AluSx SINE Alu 1 302 -10 273 330 9 19 chr13 39731701 39731767 -80013131 - MER5A DNA MER1_type -75 114 48 1444 169 37 30 chr13 39731767 39732063 -80012835 + AluJb SINE Alu 1 298 -14 273 330 9 19 chr13 39732063 39732102 -80012796 - MER5A DNA MER1_type -141 48 10 1229 174 9 0 chr13 39732204 39732417 -80012481 - AluJb SINE Alu -12 300 86 234 278 41 52 chr13 39732462 39732559 -80012339 + MER21B LTR ERV1 1 96 -767 2624 226 59 35 chr13 39732598 39733289 -80011609 + MER21B LTR ERV1 98 805 -58 332 263 32 11 chr13 39733345 39733440 -80011458 + L2 LINE L2 3216 3312 -1 1927 155 0 3 chr13 39733628 39733924 -80010974 - AluJb SINE Alu -15 297 3 1215 202 122 55 chr13 39734162 39734312 -80010586 + MSTC LTR MaLR 1 139 -289 2204 103 3 0 chr13 39734312 39734621 -80010277 + AluSp SINE Alu 1 310 0 1215 202 122 55 chr13 39734621 39734870 -80010028 + MSTC LTR MaLR 139 428 0 262 259 71 0 chr13 39734936 39735021 -80009877 + L1ME LINE L1 5767 5857 -264 2174 113 0 7 chr13 39735168 39735468 -80009430 + AluSx SINE Alu 5 302 -10 22 35 0 0 chr13 39735708 39735737 -80009161 + AT_rich Low_complexity Low_complexity 1 29 0 385 208 131 69 chr13 39736373 39736503 -80008395 - MIR3 SINE MIR -6 202 65 2233 106 10 0 chr13 39738093 39738396 -80006502 - AluSp SINE Alu -7 306 1 1795 90 4 8 chr13 39739352 39739586 -80005312 - AluSg/x SINE Alu -14 298 66 344 261 127 28 chr13 39739767 39739909 -80004989 - MIR SINE MIR -105 157 2 253 288 17 0 chr13 39740088 39740147 -80004751 - MER91B DNA MER1_type 0 196 137 2252 97 3 28 chr13 39740148 39740467 -80004431 + AluY SINE Alu 1 311 0 1057 100 6 47 chr13 39740469 39740639 -80004259 + AluSg/x SINE Alu 129 291 -21 244 293 120 0 chr13 39740639 39740714 -80004184 - MER91B DNA MER1_type -50 140 57 280 267 108 25 chr13 39741024 39741144 -80003754 - MIR SINE MIR -71 191 62 2229 90 0 3 chr13 39741156 39741445 -80003453 - AluSg SINE Alu -22 288 1 2102 135 0 7 chr13 39741490 39741793 -80003105 - AluSx SINE Alu -11 301 1 467 291 106 5 chr13 39742154 39742343 -80002555 + MIR SINE MIR 2 209 -53 27 29 0 0 chr13 39742381 39742415 -80002483 + AT_rich Low_complexity Low_complexity 1 34 0 353 298 78 0 chr13 39742506 39742647 -80002251 + L1MC4 LINE L1 7890 8041 -1 1328 197 80 24 chr13 39742727 39743016 -80001882 + AluJo SINE Alu 1 305 -7 1183 148 51 5 chr13 39743318 39743535 -80001363 + MER46A DNA MER2_type 6 232 -4 291 28 0 0 chr13 39744063 39744099 -80000799 + (A)n Simple_repeat Simple_repeat 1 36 0 1801 179 0 3 chr13 39745344 39745635 -79999263 - AluJo SINE Alu -22 290 1 1968 140 3 7 chr13 39746206 39746498 -79998400 - AluJb SINE Alu -21 291 1 205 297 0 31 chr13 39747855 39747919 -79996979 - L3 LINE CR1 -1199 378 317 301 284 49 39 chr13 39749003 39749105 -79995793 - L1MEd LINE L1 -4741 1390 1288 464 201 169 44 chr13 39749294 39749525 -79995373 - L1MEd LINE L1 -4917 1202 931 1905 134 31 14 chr13 39749525 39749815 -79995083 - AluSx SINE Alu -17 295 1 464 201 169 44 chr13 39749815 39749856 -79995042 - L1MEd LINE L1 -5188 931 896 652 192 53 0 chr13 39749902 39750053 -79994845 - L1MA10 LINE L1 -1 6333 6175 285 171 27 95 chr13 39750053 39750166 -79994732 - L1ME2 LINE L1 -151 6015 5917 339 147 0 44 chr13 39750174 39750242 -79994656 + Tigger2 DNA MER2_type 5 69 -2649 * 925 130 0 12 chr13 39750232 39750394 -79994504 + Tigger2 DNA MER2_type 2273 2432 -286 911 180 12 30 chr13 39750394 39750561 -79994337 + AluJo SINE Alu 1 164 -148 284 238 48 0 chr13 39750563 39750626 -79994272 + Tigger2 DNA MER2_type 2653 2718 0 315 202 18 37 chr13 39750644 39750753 -79994145 - L1ME2 LINE L1 -279 5887 5781 443 83 0 0 chr13 39750756 39750816 -79994082 + Alu SINE Alu 236 295 -15 385 184 11 0 chr13 39750818 39750905 -79993993 + L1M4 LINE L1 5688 5775 -409 1613 141 12 0 chr13 39750938 39751180 -79993718 + AluSx SINE Alu 1 245 -67 708 319 59 12 chr13 39751208 39751616 -79993282 + L1MEd LINE L1 474 900 -5219 798 239 0 10 chr13 39751628 39751825 -79993073 + L1MEc LINE L1 37 231 -6165 492 187 16 32 chr13 39751833 39751956 -79992942 + L1ME LINE L1 5564 5684 -482 * 524 277 86 26 chr13 39751937 39752204 -79992694 - L1MEd LINE L1 -5669 450 168 25 31 0 0 chr13 39752635 39752667 -79992231 + AT_rich Low_complexity Low_complexity 1 32 0 2130 131 0 0 chr13 39752672 39752962 -79991936 - AluSq SINE Alu -23 290 1 1808 170 13 3 chr13 39753025 39753331 -79991567 - AluJo SINE Alu -3 309 1 337 333 80 84 chr13 39754068 39754519 -79990379 + L2 LINE L2 2809 3257 -15 25 31 0 0 chr13 39755206 39755238 -79989660 + AT_rich Low_complexity Low_complexity 1 32 0 1931 148 21 3 chr13 39755271 39755561 -79989337 + AluSx SINE Alu 6 300 -12 778 236 48 75 chr13 39755562 39755960 -79988938 - L1MC5 LINE L1 -287 7674 7288 1645 154 0 101 chr13 39756032 39756369 -79988529 - AluJo SINE Alu -6 306 4 587 181 56 95 chr13 39756375 39756655 -79988243 - L1MC5 LINE L1 -34 7927 7658 2373 91 3 0 chr13 39756655 39756952 -79987946 - AluSp SINE Alu -15 298 1 587 181 56 95 chr13 39756952 39756975 -79987923 - L1MC5 LINE L1 -303 7658 7636 1854 167 86 3 chr13 39756975 39757335 -79987563 + MLT1B LTR MaLR 1 390 0 897 123 152 6 chr13 39757926 39758097 -79986801 + MSTA LTR MaLR 1 196 -232 6606 65 21 35 chr13 39758097 39760088 -79984810 + SVA Other Other 7 1386 0 4616 26 0 0 chr13 39760135 39760672 -79984226 - L1PA2 LINE L1 -5 6150 5614 4144 20 0 0 chr13 39760672 39761173 -79983725 + L1P LINE L1 4507 5007 -1139 440 167 10 0 chr13 39761530 39761626 -79983272 + (TA)n Simple_repeat Simple_repeat 2 98 0 404 174 0 31 chr13 39761996 39762034 -79982864 + MER53 DNA DNA 95 133 -56 2269 109 0 3 chr13 39762034 39762338 -79982560 + AluSx SINE Alu 1 303 -9 404 174 0 31 chr13 39762338 39762397 -79982501 + MER53 DNA DNA 133 189 0 2382 104 0 0 chr13 39762958 39763257 -79981641 + AluSq SINE Alu 1 299 -14 2022 160 0 3 chr13 39763589 39763902 -79980996 + AluSx SINE Alu 1 312 0 208 319 14 0 chr13 39763968 39764040 -79980858 - MIR3 SINE MIR -11 197 125 2234 112 0 7 chr13 39764152 39764448 -79980450 - AluSx SINE Alu -18 294 1 2075 154 0 3 chr13 39764662 39764960 -79979938 - AluSx SINE Alu -15 297 1 1083 150 0 0 chr13 39765002 39765155 -79979743 + FRAM SINE Alu 5 157 -19 2048 102 25 3 chr13 39765823 39766107 -79978791 - AluSc SINE Alu -19 290 1 23 0 0 0 chr13 39766229 39766252 -79978646 + AT_rich Low_complexity Low_complexity 1 23 0 442 223 117 0 chr13 39766435 39766529 -79978369 - L2 LINE L2 -10 3303 3199 21 0 0 0 chr13 39766600 39766621 -79978277 + AT_rich Low_complexity Low_complexity 1 21 0 31 76 0 0 chr13 39767105 39767171 -79977727 + AT_rich Low_complexity Low_complexity 1 66 0 2079 122 27 3 chr13 39767543 39767839 -79977059 + AluSg SINE Alu 5 307 -3 627 142 8 16 chr13 39767842 39767969 -79976929 + GA-rich Low_complexity Low_complexity 3 128 0 1796 158 0 47 chr13 39768001 39768318 -79976580 + AluJo SINE Alu 1 302 -10 1691 176 6 53 chr13 39768384 39768707 -79976191 + AluJb SINE Alu 1 308 -4 968 241 9 14 chr13 39769024 39769244 -79975654 - MER20 DNA MER1_type 0 219 1 2373 92 0 19 chr13 39770783 39771097 -79973801 + AluSg SINE Alu 1 308 -2 2176 113 3 0 chr13 39771365 39771656 -79973242 + AluSq SINE Alu 1 292 -21 829 138 0 23 chr13 39771725 39771855 -79973043 - FLAM_C SINE Alu -6 127 1 21 0 0 0 chr13 39771861 39771882 -79973016 + AT_rich Low_complexity Low_complexity 1 21 0 193 156 62 109 chr13 39772492 39772507 -79972391 + MIR SINE MIR 201 215 -47 2339 96 0 3 chr13 39772507 39772809 -79972089 + AluSx SINE Alu 1 301 -11 193 156 62 109 chr13 39772809 39772857 -79972041 + MIR SINE MIR 215 261 -1 713 287 206 37 chr13 39773456 39773864 -79971034 - L2 LINE L2 -398 2916 2440 206 220 0 60 chr13 39773865 39773915 -79970983 + MIR SINE MIR 210 256 -6 2237 121 0 3 chr13 39774116 39774430 -79970468 + AluSq SINE Alu 1 313 0 313 333 140 71 chr13 39774448 39775190 -79969708 + L2 LINE L2 2128 2920 -394 * 714 285 54 16 chr13 39775180 39775422 -79969476 - MIR SINE MIR -10 252 2 471 197 31 79 chr13 39775975 39776036 -79968862 - MER5A DNA MER1_type -68 121 68 2170 123 0 0 chr13 39776036 39776329 -79968569 + AluSx SINE Alu 1 293 -19 471 197 31 79 chr13 39776329 39776394 -79968504 - MER5A DNA MER1_type -121 68 1 230 251 12 152 chr13 39776400 39776502 -79968396 + MIR3 SINE MIR 25 95 -113 756 143 0 86 chr13 39776502 39776642 -79968256 - FLAM_C SINE Alu -5 128 1 230 251 12 152 chr13 39776642 39776710 -79968188 + MIR3 SINE MIR 95 171 -37 2236 98 0 7 chr13 39776712 39777009 -79967889 - AluSx SINE Alu -17 295 1 363 239 14 0 chr13 39777026 39777097 -79967801 - MER5A DNA MER1_type -114 75 4 1233 236 69 55 chr13 39777126 39777676 -79967222 + L1ME3 LINE L1 5604 6161 -1 2111 97 36 4 chr13 39777681 39777959 -79966939 + AluSx SINE Alu 1 287 -25 6418 60 35 38 chr13 39778169 39779222 -79965676 + SVA Other Other 433 1386 0 458 143 92 59 chr13 39779254 39779307 -79965591 + LTR49-int LTR ERV1 3141 3191 -3140 2158 138 3 6 chr13 39779307 39779619 -79965279 - AluSq SINE Alu -2 311 1 458 143 92 59 chr13 39779619 39779684 -79965214 + LTR49-int LTR ERV1 3191 3263 -3068 319 200 0 0 chr13 39779738 39779798 -79965100 + LTR49-int LTR ERV1 3275 3334 -2997 457 194 20 0 chr13 39779861 39779959 -79964939 + LTR49-int LTR ERV1 3348 3447 -2884 186 43 0 0 chr13 39780136 39780159 -79964739 + (A)n Simple_repeat Simple_repeat 1 23 0 1320 96 87 30 chr13 39780160 39780390 -79964508 + MSTA LTR MaLR 186 428 0 245 343 14 0 chr13 39780558 39780631 -79964267 - L2 LINE L2 -44 3228 3155 788 191 0 0 chr13 39781040 39781171 -79963727 + FLAM_A SINE Alu 1 131 -2 2270 97 0 7 chr13 39781842 39782142 -79962756 + AluSc SINE Alu 1 298 -11 423 273 42 35 chr13 39782404 39782547 -79962351 - MIR3 SINE MIR -1 207 64 2348 185 79 84 chr13 39782571 39783249 -79961649 - L1MC4 LINE L1 -5 8037 7362 734 167 0 0 chr13 39783249 39783363 -79961535 - FLAM_A SINE Alu -18 115 2 2348 185 79 84 chr13 39783363 39783477 -79961421 - L1MC4 LINE L1 -680 7362 7249 673 159 0 0 chr13 39783502 39783609 -79961289 - AluSg/x SINE Alu -16 293 187 994 206 0 0 chr13 39784033 39784208 -79960690 + FAM SINE Alu 1 175 0 26 30 0 0 chr13 39784884 39784917 -79959981 + AT_rich Low_complexity Low_complexity 1 33 0 1940 136 19 10 chr13 39785028 39785336 -79959562 + AluSx SINE Alu 1 311 -1 430 261 187 25 chr13 39785648 39785851 -79959047 - MIR SINE MIR -21 241 6 2315 90 3 3 chr13 39786255 39786554 -79958344 + AluSc SINE Alu 2 300 -9 1600 154 60 101 chr13 39786905 39787189 -79957709 - MLT1C LTR MaLR 0 467 210 1780 154 0 0 chr13 39787189 39787462 -79957436 - AluJb SINE Alu -39 273 1 1600 154 60 101 chr13 39787462 39787664 -79957234 - MLT1C LTR MaLR -257 210 1 2137 130 7 3 chr13 39787967 39788267 -79956631 + AluSx SINE Alu 1 301 -11 448 269 100 0 chr13 39788448 39788608 -79956290 + MER5B DNA MER1_type 3 178 0 508 286 65 39 chr13 39789908 39790140 -79954758 + MIR SINE MIR 30 260 -2 2055 119 7 7 chr13 39790220 39790515 -79954383 - AluJo SINE Alu -12 300 6 334 265 10 0 chr13 39790707 39790805 -79954093 + L1ME3A LINE L1 6072 6170 0 1999 167 0 0 chr13 39791346 39791645 -79953253 - AluJb SINE Alu -11 301 3 438 256 78 85 chr13 39791937 39792195 -79952703 + MIR SINE MIR 7 262 0 238 238 32 16 chr13 39792249 39792312 -79952586 - L1P LINE L1 -2471 3675 3612 1003 224 10 15 chr13 39792343 39792548 -79952350 - AluJo SINE Alu -25 287 84 295 250 83 0 chr13 39793650 39793722 -79951176 - MIR SINE MIR -173 89 12 1786 171 23 0 chr13 39793879 39794178 -79950720 - AluJo SINE Alu -6 306 1 258 268 163 26 chr13 39795232 39795385 -79949513 - MIR SINE MIR -12 250 77 2004 170 10 24 chr13 39796407 39796825 -79948073 + L1MB8 LINE L1 5761 6172 -6 666 280 147 5 chr13 39797006 39797224 -79947674 + MIR SINE MIR 12 260 -2 2199 101 7 16 chr13 39799164 39799471 -79945427 - AluSp SINE Alu -8 305 2 239 287 178 25 chr13 39800321 39800596 -79944302 + L1ME LINE L1 4600 4916 -1230 2195 114 0 3 chr13 39800725 39801032 -79943866 + AluSc SINE Alu 1 306 -3 25 75 0 0 chr13 39801121 39801174 -79943724 + AT_rich Low_complexity Low_complexity 1 53 0 266 269 177 7 chr13 39801353 39801494 -79943404 + L1M1 LINE L1 5399 5563 -737 1183 100 9 113 chr13 39801509 39801739 -79943159 - L1PA16 LINE L1 -12 6154 5949 1172 194 13 17 chr13 39801895 39802127 -79942771 - MIR SINE MIR -29 233 3 265 222 148 0 chr13 39802149 39802230 -79942668 + L1ME LINE L1 5689 5781 -340 633 258 45 0 chr13 39802807 39802939 -79941959 + MIR SINE MIR 36 173 -89 280 301 68 30 chr13 39803099 39803232 -79941666 - MER112 DNA MER1_type -121 139 2 28 29 0 0 chr13 39803635 39803670 -79941228 + AT_rich Low_complexity Low_complexity 1 35 0 431 299 0 0 chr13 39804083 39804180 -79940718 - MIR3 SINE MIR -27 181 85 213 241 63 38 chr13 39806712 39806791 -79938107 - L2 LINE L2 -5 3308 3228 1469 203 11 18 chr13 39806909 39807190 -79937708 + AluJo SINE Alu 1 279 -33 344 290 107 8 chr13 39808788 39808919 -79935979 + MIR SINE MIR 1 144 -118 266 236 163 24 chr13 39808924 39809047 -79935851 + MIR SINE MIR 117 256 -6 2489 40 7 3 chr13 39809565 39809863 -79935035 - AluY SINE Alu -12 299 1 2180 115 6 16 chr13 39809927 39810241 -79934657 + AluSx SINE Alu 1 311 -1 457 310 26 7 chr13 39810840 39810995 -79933903 - MIR3 SINE MIR -9 199 42 2054 138 10 0 chr13 39811429 39811725 -79933173 - AluSx SINE Alu -13 299 1 27 0 0 0 chr13 39812167 39812194 -79932704 + AT_rich Low_complexity Low_complexity 1 27 0 2200 98 17 0 chr13 39813201 39813497 -79931401 + AluSx SINE Alu 1 301 -11 2042 126 80 89 chr13 39813500 39813961 -79930937 + L1MC3 LINE L1 7206 7662 -123 238 155 138 0 chr13 39813970 39814028 -79930870 + L1MC3 LINE L1 7709 7774 -11 806 174 0 0 chr13 39814072 39814204 -79930694 - FLAM_C SINE Alu -1 132 1 311 293 152 30 chr13 39814751 39814915 -79929983 - MIR SINE MIR -71 191 8 1752 176 7 13 chr13 39816111 39816412 -79928486 - AluJo SINE Alu -13 299 1 1984 137 3 3 chr13 39816988 39817287 -79927611 + AluSx SINE Alu 1 299 -13 206 360 64 12 chr13 39817825 39817997 -79926901 + L2 LINE L2 2637 2817 -497 3876 155 78 5 chr13 39818104 39819163 -79925735 + L1MC1 LINE L1 4748 5879 -454 1417 123 24 44 chr13 39819163 39819413 -79925485 + L1MC1 LINE L1 6083 6328 -5 2308 95 0 0 chr13 39819889 39820183 -79924715 - AluSg SINE Alu -16 294 1 852 141 8 0 chr13 39820187 39820315 -79924583 - FLAM_C SINE Alu 0 133 5 1715 155 24 3 chr13 39820496 39820792 -79924106 + AluJb SINE Alu 1 302 -10 1918 150 67 3 chr13 39820859 39821186 -79923712 + MER7A DNA MER2_type 1 346 0 965 172 53 6 chr13 39821433 39821602 -79923296 + AluSx SINE Alu 42 218 -94 1638 138 106 0 chr13 39822866 39823148 -79921750 - AluSx SINE Alu 0 312 1 22 35 0 0 chr13 39823494 39823523 -79921375 + AT_rich Low_complexity Low_complexity 1 29 0 773 101 72 203 chr13 39823524 39823606 -79921292 + L1 LINE L1 4558 4649 -1497 2338 95 0 0 chr13 39823606 39823902 -79920996 - AluSg SINE Alu -14 296 1 773 101 72 203 chr13 39823902 39823933 -79920965 + L1 LINE L1 4649 4682 -1464 769 174 0 0 chr13 39823933 39824048 -79920850 + FLAM_C SINE Alu 1 115 -18 773 101 72 203 chr13 39824048 39824209 -79920689 + L1 LINE L1 4682 4797 -1349 441 239 0 0 chr13 39824209 39824297 -79920601 - L2 LINE L2 -37 3276 3189 548 275 88 0 chr13 39824352 39824512 -79920386 + FAM SINE Alu 1 174 -11 191 233 0 47 chr13 39824849 39824892 -79920006 - MER5B DNA MER1_type -99 79 39 1070 178 11 0 chr13 39824988 39825173 -79919725 + AluJo SINE Alu 1 187 -125 183 42 0 0 chr13 39825244 39825268 -79919630 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr13 39825534 39825564 -79919334 + AT_rich Low_complexity Low_complexity 1 30 0 199 371 136 14 chr13 39826676 39826816 -79918082 - L2 LINE L2 0 3272 3116 189 414 36 18 chr13 39827089 39827200 -79917698 + MIR SINE MIR 18 130 -132 180 0 0 0 chr13 39828078 39828098 -79916800 + (A)n Simple_repeat Simple_repeat 1 20 0 5170 198 92 35 chr13 39830418 39831586 -79913312 + Charlie1a DNA MER1_type 1 1260 -1501 683 195 8 23 chr13 39831586 39831714 -79913184 - FLAM_A SINE Alu -7 126 1 5170 198 92 35 chr13 39831714 39831916 -79912982 + Charlie1a DNA MER1_type 1260 1449 -6 266 305 97 7 chr13 39831966 39832120 -79912778 - L1ME LINE L1 -422 5699 5532 25 51 0 0 chr13 39832242 39832281 -79912617 + AT_rich Low_complexity Low_complexity 1 39 0 607 167 0 0 chr13 39832503 39832605 -79912293 - Charlie1 DNA MER1_type 0 2761 2660 759 178 0 22 chr13 39832751 39832886 -79912012 + AluJo SINE Alu 1 132 -170 751 201 30 37 chr13 39832915 39833079 -79911819 + AluJo SINE Alu 120 282 -30 186 43 0 0 chr13 39833116 39833139 -79911759 + (TG)n Simple_repeat Simple_repeat 1 23 0 217 234 208 0 chr13 39833279 39833356 -79911542 + L2 LINE L2 3221 3313 0 1881 163 0 0 chr13 39834080 39834368 -79910530 - AluJb SINE Alu -21 291 4 538 228 31 8 chr13 39834392 39834519 -79910379 - FLAM_A SINE Alu -3 130 1 2010 138 0 19 chr13 39834652 39834964 -79909934 + AluSx SINE Alu 1 306 -6 1755 161 3 50 chr13 39835158 39835481 -79909417 - AluJo SINE Alu 0 312 5 27 29 0 0 chr13 39835591 39835625 -79909273 + AT_rich Low_complexity Low_complexity 1 34 0 477 177 0 0 chr13 39835718 39835797 -79909101 - Charlie2 DNA MER1_type -2554 308 230 305 226 43 0 chr13 39835959 39836052 -79908846 + L1ME3 LINE L1 5727 5823 -339 329 260 56 51 chr13 39836064 39836260 -79908638 + L1ME3 LINE L1 5871 6067 -95 23 33 0 0 chr13 39836488 39836518 -79908380 + AT_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr13 39836557 39836592 -79908306 + AT_rich Low_complexity Low_complexity 1 35 0 296 241 69 35 chr13 39836776 39836892 -79908006 + HAL1 LINE L1 2379 2498 -9 206 312 37 46 chr13 39838166 39838275 -79906623 + MER5A DNA MER1_type 7 114 -75 2447 84 3 0 chr13 39839264 39839572 -79905326 + AluSp SINE Alu 5 313 0 306 0 0 0 chr13 39839575 39839609 -79905289 + (TA)n Simple_repeat Simple_repeat 2 35 0 504 241 115 9 chr13 39839946 39840095 -79904803 + MIR3 SINE MIR 39 208 0 24 53 0 0 chr13 39842200 39842238 -79902660 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr13 39843257 39843287 -79901611 + AT_rich Low_complexity Low_complexity 1 30 0 569 283 66 6 chr13 39844158 39844324 -79900574 + MIR SINE MIR 25 200 -62 3613 198 59 24 chr13 39844324 39845202 -79899696 + L1ME1 LINE L1 5254 6162 -4 2030 121 7 0 chr13 39845226 39845507 -79899391 + AluSx SINE Alu 1 283 -29 253 160 7 0 chr13 39845520 39845576 -79899322 + L1PA7 LINE L1 6091 6166 -6 218 330 85 28 chr13 39846380 39846486 -79898412 + L2 LINE L2 3159 3270 -2 27 29 0 0 chr13 39846753 39846787 -79898111 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr13 39846917 39846940 -79897958 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1341 143 6 163 chr13 39846955 39847304 -79897594 - AluJo SINE Alu -18 294 1 208 125 0 100 chr13 39848020 39848060 -79896838 - MIR3 SINE MIR -22 186 151 230 223 152 45 chr13 39848144 39848256 -79896642 - MIR3 SINE MIR -27 181 58 458 163 35 0 chr13 39848261 39848347 -79896551 - L2 LINE L2 -2 3311 3223 18811 146 57 20 chr13 39848365 39851361 -79893537 + ERVL-B3 LTR ERVL 2409 5533 -231 2195 104 0 36 chr13 39851361 39851670 -79893228 - AluSg SINE Alu -12 298 1 18811 146 57 20 chr13 39851670 39851902 -79892996 + ERVL-B3 LTR ERVL 5533 5755 -9 1376 127 73 70 chr13 39851904 39852020 -79892878 + MLT2B3 LTR ERVL 1 115 -439 1815 146 42 0 chr13 39852020 39852307 -79892591 - AluJb SINE Alu -11 301 3 1376 127 73 70 chr13 39852307 39852449 -79892449 + MLT2B3 LTR ERVL 115 260 -294 1468 275 79 55 chr13 39852449 39853088 -79891810 - L2 LINE L2 -879 2435 1778 1743 184 7 26 chr13 39853088 39853393 -79891505 + AluJb SINE Alu 1 299 -13 1468 275 79 55 chr13 39853393 39853423 -79891475 - L2 LINE L2 -1536 1778 1750 1634 194 16 7 chr13 39853506 39853815 -79891083 + AluJb SINE Alu 1 312 0 396 224 103 67 chr13 39853917 39854082 -79890816 + MIR3 SINE MIR 33 203 -5 2300 96 0 7 chr13 39854165 39854468 -79890430 + AluSg1 SINE Alu 1 301 -8 2434 91 0 0 chr13 39854835 39855144 -79889754 - AluSq SINE Alu -3 310 2 1720 175 36 7 chr13 39855205 39855508 -79889390 + AluJo SINE Alu 1 312 0 518 299 147 5 chr13 39855811 39856022 -79888876 + MIR SINE MIR 4 244 -18 612 205 117 2 chr13 39856025 39856179 -79888719 + L1MD2 LINE L1 5750 5918 -263 1656 149 20 0 chr13 39856189 39856438 -79888460 + MER1B DNA MER1_type 86 339 0 919 212 69 27 chr13 39856439 39856712 -79888186 + L1ME1 LINE L1 5901 6135 -31 1739 206 97 10 chr13 39856712 39857114 -79887784 + L1MD3 LINE L1 7559 7995 0 23 0 0 0 chr13 39857414 39857437 -79887461 + AT_rich Low_complexity Low_complexity 1 23 0 210 250 0 0 chr13 39857950 39857994 -79886904 + L2 LINE L2 3265 3308 -5 198 143 0 0 chr13 39858341 39858376 -79886522 + (A)n Simple_repeat Simple_repeat 1 35 0 234 0 0 0 chr13 39858472 39858498 -79886400 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2306 84 0 53 chr13 39858520 39858843 -79886055 - AluY SINE Alu -5 306 1 5817 33 0 0 chr13 39859099 39859735 -79885163 + L1PA5 LINE L1 5510 6145 -9 22 0 0 0 chr13 39859735 39859757 -79885141 + AT_rich Low_complexity Low_complexity 1 22 0 225 320 64 13 chr13 39860005 39860083 -79884815 - MIR SINE MIR -161 101 20 2465 87 0 3 chr13 39860142 39860453 -79884445 + AluSg SINE Alu 1 310 0 1601 140 9 89 chr13 39860835 39861150 -79883748 + AluJb SINE Alu 1 290 -22 2039 120 34 0 chr13 39861362 39861654 -79883244 + AluSx SINE Alu 1 302 -10 817 160 8 0 chr13 39861745 39861890 -79883008 + FLAM_C SINE Alu 1 146 0 189 0 0 0 chr13 39861964 39861985 -79882913 + (A)n Simple_repeat Simple_repeat 1 21 0 401 278 152 32 chr13 39862487 39863082 -79881816 + L1MC4a LINE L1 5299 5993 -128 2236 144 6 37 chr13 39863082 39863430 -79881468 - MER1B DNA MER1_type 0 337 1 401 278 152 32 chr13 39863430 39863488 -79881410 + L1MC4a LINE L1 5993 6043 -78 237 257 122 0 chr13 39863497 39863571 -79881327 - L2 LINE L2 -24 3289 3207 352 302 158 14 chr13 39863612 39863827 -79881071 - L2 LINE L2 -241 3072 2827 1621 187 20 7 chr13 39864024 39864318 -79880580 + AluJb SINE Alu 1 298 -14 316 275 147 0 chr13 39864359 39864468 -79880430 - MER5A DNA MER1_type -22 167 43 1584 153 43 0 chr13 39864664 39864919 -79879979 - AluSx SINE Alu -24 288 23 42550 59 7 1 chr13 39864936 39871042 -79873856 - L1PA5 LINE L1 0 6154 11 1505 201 21 0 chr13 39871056 39871340 -79873558 - AluJb SINE Alu -22 290 1 456 261 197 46 chr13 39871418 39871789 -79873109 + L2 LINE L2 1729 2155 -1159 403 339 104 32 chr13 39872067 39872538 -79872360 + L2 LINE L2 2726 3221 -51 3287 153 59 65 chr13 39872643 39873194 -79871704 - L1MB2 LINE L1 -1 6170 5622 2099 110 21 0 chr13 39873194 39873476 -79871422 - AluSg SINE Alu -22 288 1 3287 153 59 65 chr13 39873476 39873652 -79871246 - L1MB2 LINE L1 -549 5622 5447 2214 125 3 13 chr13 39874554 39874867 -79870031 - AluSx SINE Alu -2 310 1 823 231 0 0 chr13 39875197 39875357 -79869541 + FRAM SINE Alu 1 160 -6 21 0 0 0 chr13 39875678 39875699 -79869199 + AT_rich Low_complexity Low_complexity 1 21 0 2235 116 0 0 chr13 39875701 39875995 -79868903 + AluSx SINE Alu 3 296 -16 359 266 58 91 chr13 39877631 39877785 -79867113 - L2 LINE L2 -1 3271 3123 247 276 47 39 chr13 39877976 39878103 -79866795 + L2 LINE L2 2932 3059 -213 1335 138 5 37 chr13 39878317 39878534 -79866364 - AluJb SINE Alu -17 295 86 2950 189 80 14 chr13 39878621 39879247 -79865651 - L1MB8 LINE L1 -2 6176 5510 491 296 177 24 chr13 39879297 39879691 -79865207 - L2 LINE L2 -94 3219 2770 1112 150 22 75 chr13 39879779 39880005 -79864893 - AluJo SINE Alu -12 300 87 1313 132 118 87 chr13 39880012 39880299 -79864599 - AluSg SINE Alu -14 296 1 2247 102 0 3 chr13 39881318 39881621 -79863277 + AluSx SINE Alu 1 302 -10 654 41 0 0 chr13 39883364 39883437 -79861461 - tRNA-Glu-GAA tRNA tRNA -2 73 1 333 118 0 0 chr13 39883533 39883584 -79861314 + (CCG)n Simple_repeat Simple_repeat 2 52 0 252 0 0 0 chr13 39884724 39884752 -79860146 + (T)n Simple_repeat Simple_repeat 1 28 0 1447 247 113 23 chr13 39886676 39887154 -79857744 - L1MC4a LINE L1 -1775 6033 5513 189 0 0 0 chr13 39887917 39887938 -79856960 + (A)n Simple_repeat Simple_repeat 1 21 0 467 288 105 9 chr13 39889318 39889547 -79855351 - L1ME LINE L1 -336 5785 5535 1365 144 144 4 chr13 39889620 39889877 -79855021 - AluJb SINE Alu -15 297 5 1573 150 7 37 chr13 39890026 39890299 -79854599 + AluJo SINE Alu 1 265 -47 796 158 0 15 chr13 39890672 39890805 -79854093 - L1PB4 LINE L1 0 6156 6026 277 265 100 80 chr13 39890870 39891119 -79853779 - L1ME LINE L1 -1310 4836 4583 181 30 91 0 chr13 39891256 39891289 -79853609 + A-rich Low_complexity Low_complexity 3 38 0 970 120 0 8 chr13 39891872 39892005 -79852893 + AluSq/x SINE Alu 1 132 -181 1969 95 4 0 chr13 39892008 39892260 -79852638 + AluY SINE Alu 1 253 -58 621 108 0 0 chr13 39892260 39892343 -79852555 + AluY SINE Alu 209 291 -20 1237 128 0 0 chr13 39892343 39892531 -79852367 + AluSp SINE Alu 121 308 -5 342 250 0 0 chr13 39892874 39892938 -79851960 + L2 LINE L2 3186 3249 -23 196 302 201 35 chr13 39893119 39893463 -79851435 - L2 LINE L2 -881 2433 2033 1976 137 0 16 chr13 39894388 39894695 -79850203 + AluSg SINE Alu 1 302 -8 2493 139 58 15 chr13 39894897 39895307 -79849591 - MSTA LTR MaLR 0 428 1 207 180 49 82 chr13 39895797 39895858 -79849040 - MIR3 SINE MIR -28 180 122 2114 104 13 10 chr13 39895859 39896157 -79848741 + AluSq SINE Alu 1 299 -14 2180 92 34 0 chr13 39896160 39896453 -79848445 + AluSx SINE Alu 1 303 -9 2403 61 7 3 chr13 39896563 39896856 -79848042 - AluY SINE Alu -15 296 3 426 313 149 9 chr13 39897119 39897333 -79847565 + MIR SINE MIR 6 249 -13 1693 130 0 0 chr13 39897346 39897584 -79847314 + AluSx SINE Alu 6 243 -69 31 0 0 0 chr13 39897584 39897615 -79847283 + AT_rich Low_complexity Low_complexity 1 31 0 379 272 39 0 chr13 39897703 39897806 -79847092 - MER94 DNA DNA 0 134 28 1610 197 3 10 chr13 39898009 39898303 -79846595 - AluJo SINE Alu -14 298 7 2218 113 0 13 chr13 39898898 39899209 -79845689 - AluSc SINE Alu -2 307 1 1629 158 27 30 chr13 39899637 39899973 -79844925 + L1PB4 LINE L1 3679 4013 -2133 989 170 0 0 chr13 39899974 39900133 -79844765 + AluSg/x SINE Alu 137 295 -17 5767 178 43 26 chr13 39900135 39901174 -79843724 + L1PB4 LINE L1 4003 5023 -1133 2371 106 3 0 chr13 39901174 39901486 -79843412 + AluSp SINE Alu 1 313 0 5767 178 43 26 chr13 39901486 39901917 -79842981 + L1PB4 LINE L1 5023 5445 -711 1868 102 117 11 chr13 39901917 39902191 -79842707 + AluSx SINE Alu 1 303 -9 5767 178 43 26 chr13 39902191 39902850 -79842048 + L1PB4 LINE L1 5445 6152 -4 2095 103 4 0 chr13 39903563 39903836 -79841062 + AluSc SINE Alu 18 291 -18 1823 171 7 3 chr13 39903845 39904149 -79840749 + AluJb SINE Alu 1 305 -7 913 182 0 0 chr13 39904295 39904454 -79840444 + FRAM SINE Alu 1 158 -18 1485 168 0 4 chr13 39904804 39905042 -79839856 - AluJb SINE Alu -75 237 1 247 336 65 19 chr13 39906152 39906259 -79838639 - L2 LINE L2 -11 3302 3191 24 0 0 0 chr13 39907255 39907279 -79837619 + AT_rich Low_complexity Low_complexity 1 24 0 1572 175 11 21 chr13 39907592 39907877 -79837021 + AluJb SINE Alu 11 292 -20 233 294 84 64 chr13 39907921 39908278 -79836620 - L1M4 LINE L1 -1347 4799 4436 2168 103 14 0 chr13 39908300 39908590 -79836308 + AluSg SINE Alu 1 294 -16 182 147 118 0 chr13 39908591 39908625 -79836273 + L2 LINE L2 3201 3238 -75 1734 224 44 48 chr13 39908625 39909143 -79835755 + MER74B LTR ERVL 72 587 -35 1054 281 47 0 chr13 39909169 39909510 -79835388 + L1MC4a LINE L1 5543 5899 -1909 498 270 95 21 chr13 39909519 39909708 -79835190 + MIR SINE MIR 9 211 -51 513 127 13 0 chr13 39910141 39910220 -79834678 + L1MB3 LINE L1 6059 6138 -45 900 155 0 0 chr13 39910220 39910349 -79834549 + FLAM_C SINE Alu 1 129 -4 298 98 61 0 chr13 39910349 39910431 -79834467 + (TA)n Simple_repeat Simple_repeat 2 88 0 41 66 0 0 chr13 39910433 39910509 -79834389 + AT_rich Low_complexity Low_complexity 1 76 0 210 231 0 0 chr13 39910509 39910574 -79834324 + (TA)n Simple_repeat Simple_repeat 1 65 0 1629 158 7 58 chr13 39910713 39911023 -79833875 - AluJo SINE Alu -18 294 1 1612 116 9 0 chr13 39911298 39911548 -79833350 - AluSg/x SINE Alu 0 312 67 3005 246 63 12 chr13 39911666 39912629 -79832269 - L1MCa LINE L1 -2592 3834 2823 648 144 245 43 chr13 39912621 39912691 -79832207 - L1MCa LINE L1 -4120 2306 2251 * 2560 47 3 0 chr13 39912691 39912991 -79831907 - AluY SINE Alu -10 301 1 2114 102 14 3 chr13 39912991 39913285 -79831613 - AluSq SINE Alu -16 297 1 648 144 245 43 chr13 39913285 39913500 -79831398 - L1MCa LINE L1 -4174 2252 1933 520 264 0 0 chr13 39913504 39913614 -79831284 + FLAM_A SINE Alu 1 110 -32 951 106 0 0 chr13 39913616 39913739 -79831159 + AluSg/x SINE Alu 163 285 -25 252 0 0 0 chr13 39913739 39913767 -79831131 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2455 74 15 21 chr13 39913769 39914106 -79830792 + L1PB2 LINE L1 5816 6150 -1 1116 137 24 19 chr13 39914116 39914186 -79830712 - L1MCa LINE L1 -4502 1924 1856 2437 86 3 0 chr13 39914186 39914489 -79830409 - AluSg SINE Alu -6 304 1 1116 137 24 19 chr13 39914489 39914586 -79830312 - L1MCa LINE L1 -4570 1856 1753 1535 162 92 4 chr13 39914586 39914857 -79830041 - AluJb SINE Alu -17 295 1 1116 137 24 19 chr13 39914857 39914893 -79830005 - L1MCa LINE L1 -4673 1753 1719 2656 73 0 12 chr13 39914893 39915235 -79829663 - MER4C LTR ERV1 0 465 128 704 89 40 0 chr13 39915235 39915336 -79829562 - AluSc SINE Alu -3 306 202 643 186 0 9 chr13 39915343 39915456 -79829442 - MER4D LTR ERV1 -238 665 554 2512 43 0 13 chr13 39915467 39915768 -79829130 + AluY SINE Alu 1 297 -14 2117 132 103 97 chr13 39916030 39916361 -79828537 + MSTA LTR MaLR 1 328 -100 2272 112 0 6 chr13 39916361 39916674 -79828224 - AluSq SINE Alu -2 311 1 2117 132 103 97 chr13 39916674 39916727 -79828171 + MSTA LTR MaLR 328 391 -37 2177 125 3 0 chr13 39916727 39917023 -79827875 - AluSq SINE Alu -16 297 1 2117 132 103 97 chr13 39917023 39917062 -79827836 + MSTA LTR MaLR 391 428 0 2143 214 105 62 chr13 39917427 39917962 -79826936 + MER50 LTR ERV1 1 512 -222 8379 128 16 24 chr13 39917962 39918082 -79826816 - L1PA11 LINE L1 0 6174 6055 2328 99 0 0 chr13 39918082 39918385 -79826513 - AluSc SINE Alu -6 303 1 8379 128 16 24 chr13 39918385 39919114 -79825784 - L1PA11 LINE L1 -119 6055 5322 2379 79 3 0 chr13 39919114 39919405 -79825493 - AluY SINE Alu -19 292 1 2405 103 3 0 chr13 39919415 39919726 -79825172 - AluSx SINE Alu 0 312 1 8379 128 16 24 chr13 39919726 39920992 -79823906 - L1PA11 LINE L1 -861 5313 4052 2143 214 105 62 chr13 39920992 39921160 -79823738 + MER50 LTR ERV1 512 734 0 1029 147 0 71 chr13 39921909 39921952 -79822946 - AluSx SINE Alu 0 310 266 180 0 0 0 chr13 39921952 39921972 -79822926 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1029 147 0 71 chr13 39921972 39922126 -79822772 - AluSx SINE Alu -44 266 127 310 221 130 0 chr13 39922134 39922211 -79822687 - L1MC4 LINE L1 -1339 6703 6617 2405 70 0 17 chr13 39922211 39922512 -79822386 - AluY SINE Alu -15 296 1 911 118 0 15 chr13 39922513 39922648 -79822250 - AluSx SINE Alu -180 133 1 2525 124 8 0 chr13 39922660 39923031 -79821867 - MER41D LTR ERV1 -183 374 1 1265 185 22 0 chr13 39923032 39923254 -79821644 + AluJo SINE Alu 56 282 -30 226 333 77 26 chr13 39923336 39923453 -79821445 - MIR SINE MIR -63 145 23 742 241 47 16 chr13 39923660 39923851 -79821047 - MIR SINE MIR -60 202 6 735 286 91 33 chr13 39924067 39924431 -79820467 + L1MC4a LINE L1 5464 5848 -1960 1633 161 21 0 chr13 39924509 39924788 -79820110 + MER49 LTR ERV1 1 285 -638 1200 189 6 8 chr13 39924838 39925098 -79819800 + LTR39 LTR ERV1 394 774 -129 498 158 0 0 chr13 39925102 39925178 -79819720 - AluS SINE Alu -229 84 9 342 288 25 34 chr13 39925188 39925306 -79819592 + MER4E LTR ERV1 641 757 -22 878 151 0 0 chr13 39925306 39925432 -79819466 + AluJo SINE Alu 1 126 -186 516 124 29 0 chr13 39925432 39925537 -79819361 + (TA)n Simple_repeat Simple_repeat 1 108 0 2142 120 3 0 chr13 39925555 39925847 -79819051 + AluSg SINE Alu 1 293 -17 452 261 21 63 chr13 39925859 39926001 -79818897 + AluJo SINE Alu 129 264 -48 1728 157 0 4 chr13 39926379 39926653 -79818245 - AluJb SINE Alu -37 275 3 239 204 68 80 chr13 39926800 39926888 -79818010 - MLT2B3 LTR ERVL 0 554 468 387 0 0 0 chr13 39926890 39926933 -79817965 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 1972 183 147 5 chr13 39926963 39927400 -79817498 - MLT2B3 LTR ERVL -55 499 1 2156 110 24 0 chr13 39927419 39927709 -79817189 + AluSg SINE Alu 1 297 -13 2181 127 0 10 chr13 39927832 39928139 -79816759 + AluSx SINE Alu 1 304 -8 268 233 100 33 chr13 39928173 39928263 -79816635 - LTR67 LTR ERVL -276 281 186 257 292 0 42 chr13 39928420 39928516 -79816382 - L1MC/D LINE L1 -1936 5872 5781 2037 112 3 43 chr13 39928620 39928943 -79815955 + AluSg SINE Alu 1 310 0 2202 105 24 0 chr13 39929103 39929398 -79815500 + AluSp SINE Alu 1 302 -11 2325 78 7 10 chr13 39929400 39929709 -79815189 + AluY SINE Alu 1 308 -3 7228 128 96 17 chr13 39930169 39931224 -79813674 + MER52C LTR ERV1 1 1162 -116 2146 128 0 0 chr13 39931224 39931530 -79813368 + AluSg SINE Alu 1 306 -4 7228 128 96 17 chr13 39931530 39931658 -79813240 + MER52C LTR ERV1 1162 1278 0 213 262 0 0 chr13 39931805 39931847 -79813051 + L3 LINE CR1 1453 1494 -83 2360 92 0 13 chr13 39932024 39932329 -79812569 + AluSx SINE Alu 2 302 -10 878 205 0 0 chr13 39932373 39932524 -79812374 - Tigger3(Golem) DNA MER2_type -1 3028 2878 284 208 113 0 chr13 39932525 39932578 -79812320 - Tigger3(Golem) DNA MER2_type -2969 60 2 1602 152 97 61 chr13 39932673 39933035 -79811863 + THE1C LTR MaLR 1 375 0 1473 187 0 53 chr13 39933038 39933134 -79811764 + AluJo SINE Alu 1 101 -211 2549 58 0 0 chr13 39933134 39933428 -79811470 + AluSg SINE Alu 1 294 -16 1473 187 0 53 chr13 39933428 39933615 -79811283 + AluJo SINE Alu 101 269 -43 488 314 61 61 chr13 39933682 39933978 -79810920 - L2 LINE L2 -78 3194 2899 279 0 0 0 chr13 39934005 39934036 -79810862 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1365 161 8 56 chr13 39934114 39934219 -79810679 + AluJb SINE Alu 42 151 -161 2315 108 0 0 chr13 39934219 39934515 -79810383 + AluSx SINE Alu 1 296 -16 1365 161 8 56 chr13 39934515 39934676 -79810222 + AluJb SINE Alu 151 295 -17 476 288 22 27 chr13 39934678 39934862 -79810036 - L2 LINE L2 -450 2864 2682 416 240 19 0 chr13 39934891 39934995 -79809903 - Charlie4a DNA MER1_type -16 492 387 3343 175 62 40 chr13 39934995 39935083 -79809815 + L1MB8 LINE L1 4360 4445 -1701 1858 159 3 19 chr13 39935083 39935391 -79809507 + AluJo SINE Alu 1 303 -9 3343 175 62 40 chr13 39935391 39936004 -79808894 + L1MB8 LINE L1 4445 5084 -1062 1352 205 37 34 chr13 39936004 39936302 -79808596 + AluJo SINE Alu 1 299 -13 3343 175 62 40 chr13 39936302 39936422 -79808476 + L1MB8 LINE L1 5084 5200 -946 1637 132 92 86 chr13 39936429 39936672 -79808226 - MLT1B LTR MaLR 0 390 143 1634 117 133 0 chr13 39936672 39936936 -79807962 - AluSg SINE Alu -9 301 3 1637 132 92 86 chr13 39936936 39937040 -79807858 - MLT1B LTR MaLR -247 143 41 1790 149 73 89 chr13 39937044 39937445 -79807453 + L1MB8 LINE L1 5745 6140 -38 2556 59 0 3 chr13 39937445 39937749 -79807149 - AluY SINE Alu -8 303 1 1790 149 73 89 chr13 39937749 39937783 -79807115 + L1MB8 LINE L1 6140 6173 -5 297 111 0 0 chr13 39937783 39937837 -79807061 - Charlie4a DNA MER1_type -97 411 358 232 91 0 0 chr13 39937843 39937876 -79807022 - Alu SINE Alu -10 292 260 513 127 13 0 chr13 39938237 39938316 -79806582 + L1MB3 LINE L1 6059 6138 -45 900 155 0 0 chr13 39938316 39938445 -79806453 + FLAM_C SINE Alu 1 129 -4 298 98 61 0 chr13 39938445 39938527 -79806371 + (TA)n Simple_repeat Simple_repeat 2 88 0 41 66 0 0 chr13 39938529 39938605 -79806293 + AT_rich Low_complexity Low_complexity 1 76 0 210 231 0 0 chr13 39938605 39938670 -79806228 + (TA)n Simple_repeat Simple_repeat 2 66 0 1629 158 7 58 chr13 39938809 39939119 -79805779 - AluJo SINE Alu -18 294 1 2169 100 3 3 chr13 39939394 39939710 -79805188 - AluSg SINE Alu 0 310 1 906 141 6 24 chr13 39939718 39939888 -79805010 - L1MA6 LINE L1 0 6300 6134 349 218 158 45 chr13 39940176 39940309 -79804589 + MIR SINE MIR 104 251 -11 347 369 78 18 chr13 39940318 39940535 -79804363 + L3 LINE CR1 1329 1558 -19 370 167 0 15 chr13 39942553 39942619 -79802279 - AluSp/q SINE Alu -10 293 229 353 75 0 0 chr13 39942614 39942667 -79802231 + AluSp/q SINE Alu 251 303 0 * 1348 180 30 67 chr13 39942663 39942812 -79802086 - Charlie4a DNA MER1_type -1627 334 181 1909 132 7 30 chr13 39942812 39943115 -79801783 - AluSx SINE Alu -14 298 3 1348 180 30 67 chr13 39943115 39943293 -79801605 - Charlie4a DNA MER1_type -1780 181 19 668 332 94 17 chr13 39943349 39943924 -79800974 - L2 LINE L2 -675 2639 2021 1778 153 7 17 chr13 39944073 39944374 -79800524 + AluJb SINE Alu 1 298 -14 318 23 0 0 chr13 39944482 39944526 -79800372 - L1MB4 LINE L1 -1 6179 6136 692 180 0 9 chr13 39944548 39944659 -79800239 - FLAM_A SINE Alu -10 132 23 1026 187 30 38 chr13 39944671 39944830 -79800068 - L1MB4 LINE L1 -28 6152 5994 2738 161 29 84 chr13 39944830 39945006 -79799892 - L1MB4 LINE L1 -250 5930 5746 2695 146 36 5 chr13 39945006 39945444 -79799454 - LTR47A LTR ERVL 0 452 1 2738 161 29 84 chr13 39945444 39945548 -79799350 - L1MB4 LINE L1 -434 5746 5638 1935 127 0 17 chr13 39945548 39945840 -79799058 - AluSx SINE Alu -1 311 25 2738 161 29 84 chr13 39945840 39946290 -79798608 - L1MB4 LINE L1 -542 5638 5332 2279 117 0 7 chr13 39946319 39946627 -79798271 - AluSx SINE Alu -6 306 1 2193 116 13 3 chr13 39946637 39946947 -79797951 - AluSq SINE Alu 0 313 1 941 219 35 62 chr13 39946953 39947213 -79797685 - L1MB4 LINE L1 -1196 4950 4698 2180 103 0 39 chr13 39947290 39947601 -79797297 + AluSg SINE Alu 1 299 -11 1769 119 20 0 chr13 39947623 39947874 -79797024 - AluSx SINE Alu -56 256 1 2342 86 0 0 chr13 39948539 39948831 -79796067 - AluSg SINE Alu -18 292 1 2235 131 10 0 chr13 39949046 39949352 -79795546 + 7SLRNA srpRNA srpRNA 1 309 -11 1403 191 68 25 chr13 39949368 39949646 -79795252 + AluJo SINE Alu 1 290 -22 29 28 0 0 chr13 39949646 39949682 -79795216 + AT_rich Low_complexity Low_complexity 1 36 0 263 273 118 18 chr13 39950345 39950455 -79794443 - L2 LINE L2 0 3313 3193 1003 134 24 18 chr13 39950466 39950630 -79794268 - AluJo SINE Alu -147 165 1 2000 112 7 0 chr13 39950817 39951095 -79793803 + AluSq SINE Alu 12 291 -22 1202 115 6 23 chr13 39951172 39951346 -79793552 - AluSx SINE Alu -141 171 1 308 96 0 58 chr13 39951347 39951399 -79793499 - FLAM_A SINE Alu 0 133 85 918 264 75 17 chr13 39951462 39951754 -79793144 - MLT1J LTR MaLR -132 379 71 2310 106 7 0 chr13 39951805 39952107 -79792791 - AluSg SINE Alu -6 304 1 669 128 0 0 chr13 39952458 39952552 -79792346 + AluJ/FLAM SINE Alu 3 96 -216 1620 125 0 0 chr13 39952609 39952841 -79792057 + AluSg/x SINE Alu 81 312 0 1144 188 99 50 chr13 39952844 39953095 -79791803 + AluJo SINE Alu 1 269 -43 2658 81 27 48 chr13 39953095 39953313 -79791585 + THE1B LTR MaLR 1 209 -155 2009 127 13 10 chr13 39953313 39953613 -79791285 - AluSx SINE Alu -11 301 1 2658 81 27 48 chr13 39953613 39953766 -79791132 + THE1B LTR MaLR 209 364 0 1144 188 99 50 chr13 39953766 39953796 -79791102 + AluJo SINE Alu 269 296 -16 1869 145 103 16 chr13 39954360 39954670 -79790228 - MER1B DNA MER1_type 0 337 1 1289 157 15 114 chr13 39955804 39956128 -79788770 - AluJo SINE Alu -19 293 2 2445 81 10 0 chr13 39956826 39957135 -79787763 - AluSx SINE Alu 0 312 1 213 39 0 0 chr13 39958709 39958735 -79786163 + (CTG)n Simple_repeat Simple_repeat 1 26 0 240 258 157 0 chr13 39960246 39960335 -79784563 + MIR SINE MIR 109 211 -51 578 193 67 0 chr13 39960565 39960684 -79784214 - L1MC2 LINE L1 -37 6307 6181 189 0 0 0 chr13 39960684 39960705 -79784193 + (T)n Simple_repeat Simple_repeat 1 21 0 443 277 66 59 chr13 39961106 39961532 -79783366 + MER92C-int LTR ERV1 3304 3732 -3069 2273 80 0 42 chr13 39961685 39961997 -79782901 - AluSq SINE Alu -14 299 1 1367 197 61 0 chr13 39962223 39962502 -79782396 + MER92C-int LTR ERV1 738 1033 -3903 618 323 46 39 chr13 39963436 39963786 -79781112 + MER92C-int LTR ERV1 6191 6546 -255 2866 115 4 80 chr13 39963786 39964247 -79780651 + MSTB LTR MaLR 1 426 0 618 323 46 39 chr13 39964247 39964327 -79780571 + MER92C-int LTR ERV1 6546 6624 -177 1885 214 20 63 chr13 39964495 39965000 -79779898 + MER92C LTR ERV1 57 539 -15 1668 140 11 15 chr13 39965076 39965341 -79779557 + MER21A LTR ERV1 1 264 -667 3208 138 35 57 chr13 39965346 39965627 -79779271 + MER21A LTR ERV1 376 641 -290 2022 110 3 30 chr13 39965627 39965928 -79778970 + AluSx SINE Alu 1 293 -19 3208 138 35 57 chr13 39965928 39966212 -79778686 + MER21A LTR ERV1 641 929 -2 2921 221 46 68 chr13 39966218 39967400 -79777498 + L1ME2 LINE L1 5008 6154 -10 28 48 0 0 chr13 39967438 39967480 -79777418 + AT_rich Low_complexity Low_complexity 1 42 0 281 322 87 0 chr13 39967513 39967628 -79777270 + MIR SINE MIR 125 249 -13 2858 145 9 2 chr13 39968363 39968784 -79776114 - MSTB LTR MaLR -2 424 1 26 50 0 0 chr13 39969166 39969206 -79775692 + AT_rich Low_complexity Low_complexity 1 40 0 494 204 254 7 chr13 39969488 39969630 -79775268 + MER5A DNA MER1_type 13 189 0 2392 93 0 0 chr13 39969924 39970226 -79774672 - AluSq SINE Alu -11 302 1 220 146 57 32 chr13 39971111 39971234 -79773664 + (TATAA)n Simple_repeat Simple_repeat 5 130 0 27 29 0 0 chr13 39971271 39971305 -79773593 + AT_rich Low_complexity Low_complexity 1 34 0 2296 101 0 3 chr13 39971335 39971632 -79773266 - AluSq SINE Alu -17 296 1 3964 214 61 32 chr13 39972044 39972105 -79772793 - L1MC/D LINE L1 -598 5761 5703 1746 135 79 0 chr13 39972105 39972371 -79772527 + AluSx SINE Alu 1 287 -25 3964 214 61 32 chr13 39972371 39972747 -79772151 - L1MC/D LINE L1 -656 5703 5339 2465 139 15 105 chr13 39972747 39973222 -79771676 + MER61C LTR ERV1 3 434 0 3964 214 61 32 chr13 39973222 39974153 -79770745 - L1MC/D LINE L1 -1020 5339 4348 3336 125 34 43 chr13 39974153 39974182 -79770716 + LTR26B LTR ERV1 1 29 -502 2327 95 0 0 chr13 39974182 39974477 -79770421 - AluSg SINE Alu -15 295 1 3336 125 34 43 chr13 39974477 39974983 -79769915 + LTR26B LTR ERV1 29 531 0 3964 214 61 32 chr13 39974983 39975227 -79769671 - L1MC/D LINE L1 -2011 4348 4112 705 156 0 70 chr13 39975228 39975356 -79769542 + AluJo SINE Alu 102 220 -92 698 247 52 108 chr13 39975366 39975735 -79769163 + LTR4 LTR ERV1 10 357 -239 1090 209 20 62 chr13 39975821 39976113 -79768785 + LTR4 LTR ERV1 317 596 0 520 195 0 0 chr13 39976113 39976195 -79768703 + AluJ SINE Alu 213 294 -18 597 232 6 65 chr13 39976199 39976367 -79768531 - L1MC/D LINE L1 -2037 4109 3952 2679 181 4 9 chr13 39976398 39976852 -79768046 + LTR47A LTR ERVL 1 452 0 1351 166 36 23 chr13 39977149 39977450 -79767448 - LTR25 LTR ERV1 -10 784 480 328 141 141 0 chr13 39977420 39977484 -79767414 - MER51A LTR ERV1 -354 280 208 * 527 190 133 62 chr13 39977477 39977684 -79767214 - MER61E LTR ERV1 -484 85 1 344 210 51 65 chr13 39977774 39977912 -79766986 + MER4-int LTR ERV1 2151 2286 -2594 * 1476 248 43 43 chr13 39977887 39978310 -79766588 + MER4-int LTR ERV1 1851 2273 -4058 551 151 0 5 chr13 39978311 39978407 -79766491 + MER4-int LTR ERV1 2646 2726 -3220 271 179 0 18 chr13 39978433 39978489 -79766409 + MER4-int LTR ERV1 1181 1235 -3888 604 179 79 62 chr13 39978517 39978733 -79766165 + MER4-int LTR ERV1 1956 2746 -4012 1223 150 169 52 chr13 39978741 39979263 -79765635 + LTR29 LTR ERV1 1 616 -6 326 167 0 0 chr13 39979266 39979326 -79765572 + MER4-int LTR ERV1 3577 3636 -3901 752 203 96 137 chr13 39979326 39979826 -79765072 - LTR8 LTR ERV1 0 707 246 701 121 71 37 chr13 39980106 39980287 -79764611 + MER4B-int LTR ERV1 2779 3554 -2777 1091 181 0 11 chr13 39980287 39980469 -79764429 + AluJb SINE Alu 133 312 0 1663 165 45 37 chr13 39980482 39980873 -79764025 + MER4B-int LTR ERV1 2790 3306 -1977 917 169 33 11 chr13 39980873 39981056 -79763842 - MER4C LTR ERV1 0 465 279 6692 139 18 68 chr13 39981090 39981576 -79763322 - LTR49-int LTR ERV1 -2640 5480 4971 1838 173 17 0 chr13 39981576 39981877 -79763021 - AluSx SINE Alu -6 306 1 6692 139 18 68 chr13 39981877 39982339 -79762559 - LTR49-int LTR ERV1 -3149 4971 4487 2421 91 0 7 chr13 39982339 39982647 -79762251 + AluSg SINE Alu 1 306 -4 6692 139 18 68 chr13 39982647 39982890 -79762008 - LTR49-int LTR ERV1 -3633 4487 4357 2350 93 7 0 chr13 39982890 39983192 -79761706 - AluSp SINE Alu -9 304 1 6692 139 18 68 chr13 39983192 39983306 -79761592 - LTR49-int LTR ERV1 -3763 4357 4239 680 182 86 61 chr13 39983309 39983507 -79761391 - LTR49-int LTR ERV1 -1959 2921 2719 1404 154 36 128 chr13 39983527 39984044 -79760854 - LTR49-int LTR ERV1 -3808 3729 1833 325 243 32 57 chr13 39984054 39984261 -79760637 - MER34C LTR ERV1 -183 402 155 1539 252 80 84 chr13 39984261 39985177 -79759721 - LTR49-int LTR ERV1 -3512 2434 1516 378 0 0 0 chr13 39985177 39985219 -79759679 + (TG)n Simple_repeat Simple_repeat 2 43 0 1539 252 80 84 chr13 39985219 39985281 -79759617 - LTR49-int LTR ERV1 -4430 1516 1455 182 62 31 0 chr13 39985281 39985313 -79759585 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1539 252 80 84 chr13 39985313 39985366 -79759532 - LTR49-int LTR ERV1 -4491 1455 753 1016 182 80 99 chr13 39985367 39985779 -79759119 - LTR49-int LTR ERV1 -3015 1865 768 * 1378 169 19 71 chr13 39985776 39986183 -79758715 - LTR49-int LTR ERV1 -4880 2538 355 629 178 15 86 chr13 39986241 39986438 -79758460 - MER4A LTR ERV1 -479 185 3 9727 196 68 41 chr13 39986438 39987114 -79757784 + MER21-int LTR ERV1 282 938 -5755 3526 48 0 70 chr13 39987114 39987596 -79757302 + LTR7 LTR ERV1 1 448 -2 9727 196 68 41 chr13 39987596 39987819 -79757079 + MER21-int LTR ERV1 938 1154 -5539 2287 93 3 3 chr13 39987819 39988120 -79756778 + AluSg SINE Alu 3 303 -7 9727 196 68 41 chr13 39988120 39990337 -79754561 + MER21-int LTR ERV1 1154 6061 -632 1496 185 119 3 chr13 39990339 39990658 -79754240 + LTR47A LTR ERVL 1 356 -96 1562 192 16 19 chr13 39990658 39990965 -79753933 + AluJo SINE Alu 2 307 -5 393 195 38 19 chr13 39990965 39991080 -79753818 + GA-rich Low_complexity Low_complexity 1 121 -41 2331 89 0 0 chr13 39991080 39991372 -79753526 + AluSc SINE Alu 1 292 -17 393 195 38 19 chr13 39991372 39991415 -79753483 + GA-rich Low_complexity Low_complexity 121 162 0 285 29 0 0 chr13 39991416 39991450 -79753448 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 560 172 10 0 chr13 39991451 39991550 -79753348 + LTR47A LTR ERVL 351 450 -2 325 175 0 0 chr13 39991571 39991634 -79753264 - L1MB5 LINE L1 -8 6402 6340 3404 147 22 38 chr13 39991634 39992624 -79752274 - L1MB5 LINE L1 -315 6095 5125 2888 221 63 50 chr13 39992617 39993983 -79750915 - L1MB5 LINE L1 -3028 3354 1966 * 1746 167 0 7 chr13 39993997 39994284 -79750614 + AluJo SINE Alu 14 298 -14 1831 110 0 0 chr13 39994305 39994551 -79750347 + AluSg SINE Alu 1 246 -64 2389 101 7 0 chr13 39994599 39994907 -79749991 - AluSx SINE Alu -2 310 1 4069 237 55 36 chr13 39994929 39995081 -79749817 - L1MDa LINE L1 -2196 4448 4300 1691 183 73 14 chr13 39995081 39995425 -79749473 + MLT1A1 LTR MaLR 2 365 0 4069 237 55 36 chr13 39995425 39996008 -79748890 - L1MDa LINE L1 -2344 4300 3730 2575 71 0 0 chr13 39996008 39996319 -79748579 + AluY SINE Alu 1 311 0 4069 237 55 36 chr13 39996319 39996404 -79748494 - L1MDa LINE L1 -2914 3730 3648 1669 151 45 20 chr13 39996404 39996696 -79748202 - AluJo SINE Alu -13 299 1 4069 237 55 36 chr13 39996696 39997415 -79747483 - L1MDa LINE L1 -2996 3648 2877 2324 88 0 10 chr13 39997425 39997440 -79747458 - AluSg SINE Alu -3 307 293 187 43 0 0 chr13 39997440 39997463 -79747435 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2324 88 0 10 chr13 39997463 39997753 -79747145 - AluSg SINE Alu -17 293 5 2113 116 3 7 chr13 39998410 39998702 -79746196 - AluSq SINE Alu -22 291 1 2476 207 60 78 chr13 39998702 39999032 -79745866 - L1MDa LINE L1 -4378 2266 1932 1498 200 0 23 chr13 39999032 39999332 -79745566 + AluJo SINE Alu 1 293 -19 2476 207 60 78 chr13 39999332 39999492 -79745406 - L1MDa LINE L1 -4712 1932 1771 2465 71 0 7 chr13 39999492 39999800 -79745098 - AluY SINE Alu -4 307 2 2476 207 60 78 chr13 39999800 40000174 -79744724 - L1MDa LINE L1 -4873 1771 1423 1043 187 6 0 chr13 40000174 40000340 -79744558 - FAM SINE Alu -8 167 1 2476 207 60 78 chr13 40000340 40000630 -79744268 - L1MDa LINE L1 -5221 1423 1130 2289 103 3 0 chr13 40001247 40001549 -79743349 + AluSp SINE Alu 1 303 -10 1699 202 0 0 chr13 40001690 40001987 -79742911 - AluJo SINE Alu -15 297 1 22 35 0 0 chr13 40002413 40002442 -79742456 + AT_rich Low_complexity Low_complexity 1 29 0 6713 109 28 19 chr13 40002487 40003548 -79741350 - MER11C LTR ERVK 0 1071 1 796 169 0 0 chr13 40003993 40004111 -79740787 - FLAM_A SINE Alu -12 121 4 2213 104 0 0 chr13 40004420 40004707 -79740191 - AluSg1 SINE Alu -22 287 1 353 237 154 58 chr13 40005481 40005637 -79739261 - L2 LINE L2 0 3313 3143 2000 98 0 29 chr13 40005967 40006242 -79738656 + AluSx SINE Alu 1 267 -45 673 108 14 72 chr13 40006260 40006399 -79738499 + L1MD1 LINE L1 5698 5828 -414 3892 156 23 76 chr13 40006401 40007151 -79737747 - L1MB7 LINE L1 0 6184 5518 492 196 0 28 chr13 40007151 40007258 -79737640 - U13 snRNA snRNA 0 104 1 3892 156 23 76 chr13 40007258 40007621 -79737277 - L1MB7 LINE L1 -666 5518 5137 1322 245 30 53 chr13 40007635 40008104 -79736794 - L1MDa LINE L1 -6070 472 15 2067 170 57 48 chr13 40008111 40008212 -79736686 + L1MD2 LINE L1 5827 5926 -433 1707 162 42 21 chr13 40008212 40008496 -79736402 - AluJo SINE Alu -18 294 5 2067 170 57 48 chr13 40008496 40008605 -79736293 + L1MD2 LINE L1 5926 6032 -327 2489 80 3 3 chr13 40008605 40008916 -79735982 + AluSp SINE Alu 1 311 -2 2067 170 57 48 chr13 40008916 40009209 -79735689 + L1MD2 LINE L1 6032 6336 -23 249 83 0 0 chr13 40009753 40009789 -79735109 + (TA)n Simple_repeat Simple_repeat 2 37 0 1673 155 24 34 chr13 40009789 40010080 -79734818 - AluJo SINE Alu -24 288 1 1871 112 4 4 chr13 40010461 40010721 -79734177 - AluSx SINE Alu -14 298 39 38 0 0 0 chr13 40011131 40011169 -79733729 + AT_rich Low_complexity Low_complexity 1 38 0 201 187 0 53 chr13 40011209 40011284 -79733614 + A-rich Low_complexity Low_complexity 2 72 0 997 122 0 0 chr13 40011513 40011644 -79733254 + AluJb SINE Alu 3 133 -179 212 398 11 11 chr13 40011732 40011820 -79733078 + MIR SINE MIR 34 121 -87 610 129 0 20 chr13 40011841 40011942 -79732956 + AluJb SINE Alu 205 303 -9 21 0 0 0 chr13 40012046 40012067 -79732831 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 40012955 40012983 -79731915 + AT_rich Low_complexity Low_complexity 1 28 0 401 293 106 35 chr13 40012989 40013187 -79731711 + MLT1J LTR MaLR 51 262 -249 395 341 72 47 chr13 40013514 40013875 -79731023 + L2 LINE L2 2544 2913 -401 1001 234 137 15 chr13 40014211 40014548 -79730350 + MLT1J LTR MaLR 1 378 -133 913 104 0 0 chr13 40014825 40014940 -79729958 + AluSg SINE Alu 1 115 -195 2539 58 0 10 chr13 40016087 40016397 -79728501 - AluSc SINE Alu 0 309 3 283 266 125 0 chr13 40016989 40017053 -79727845 + MIR SINE MIR 35 106 -102 231 36 0 0 chr13 40018716 40018744 -79726154 + (T)n Simple_repeat Simple_repeat 1 28 0 213 39 0 0 chr13 40020455 40020481 -79724417 + (CTG)n Simple_repeat Simple_repeat 1 26 0 685 79 0 20 chr13 40021922 40022023 -79722875 - AluJ/FLAM SINE Alu -213 99 1 2892 76 19 0 chr13 40022766 40023136 -79721762 + MER51B LTR ERV1 1 377 0 1421 201 46 26 chr13 40023507 40023811 -79721087 - AluJo SINE Alu -1 311 2 855 138 209 9 chr13 40023847 40024057 -79720841 - L1MB3 LINE L1 -12 6171 5920 637 188 86 0 chr13 40024172 40024300 -79720598 + MER3 DNA MER1_type 3 141 -68 890 219 42 50 chr13 40024312 40024502 -79720396 + L1ME2 LINE L1 4867 5054 -1092 2507 87 0 0 chr13 40024502 40024813 -79720085 + AluY SINE Alu 1 311 0 890 219 42 50 chr13 40024813 40025001 -79719897 + L1ME2 LINE L1 5054 5242 -904 984 265 57 0 chr13 40025012 40025291 -79719607 + L1ME2 LINE L1 5418 5712 -452 2159 116 3 0 chr13 40025518 40025811 -79719087 + AluSx SINE Alu 1 294 -18 270 210 0 16 chr13 40025902 40025964 -79718934 - MER41B LTR ERV1 -301 334 274 1439 176 34 81 chr13 40026135 40026214 -79718684 + L1ME2 LINE L1 5703 5784 -380 1996 129 40 64 chr13 40026214 40026587 -79718311 - THE1B LTR MaLR 0 364 1 1439 176 34 81 chr13 40026587 40026979 -79717919 + L1ME2 LINE L1 5784 6152 -12 2109 130 25 91 chr13 40028058 40028437 -79716461 + MSTC LTR MaLR 1 354 -74 2054 114 24 3 chr13 40028437 40028734 -79716164 - AluSx SINE Alu -9 303 1 2109 130 25 91 chr13 40028734 40028805 -79716093 + MSTC LTR MaLR 354 428 0 1814 88 69 47 chr13 40028968 40029266 -79715632 - AluY SINE Alu 0 304 1 570 172 0 0 chr13 40029270 40029363 -79715535 - FLAM_A SINE Alu -8 134 42 22 0 0 0 chr13 40029368 40029390 -79715508 + AT_rich Low_complexity Low_complexity 1 22 0 1074 176 0 0 chr13 40029414 40029579 -79715319 + AluJb SINE Alu 135 299 -13 498 182 15 45 chr13 40029581 40029713 -79715185 - L1ME3A LINE L1 -15 6155 6028 255 177 165 76 chr13 40030187 40030266 -79714632 + MER5A DNA MER1_type 9 94 -95 2297 103 0 10 chr13 40030280 40030581 -79714317 - AluSg SINE Alu -8 302 5 1746 168 42 3 chr13 40030586 40030871 -79714027 - AluJo SINE Alu -16 296 1 1079 252 77 49 chr13 40030998 40031501 -79713397 - MLT1F1 LTR MaLR -40 527 6 309 304 222 24 chr13 40031506 40031608 -79713290 + L1MC4 LINE L1 7248 7329 -713 3386 157 70 11 chr13 40031608 40032232 -79712666 - MER67B LTR ERV1 0 661 1 309 304 222 24 chr13 40032232 40032336 -79712562 + L1MC4 LINE L1 7329 7495 -547 1916 176 83 8 chr13 40032365 40032485 -79712413 + MSTA LTR MaLR 1 111 -317 2470 78 3 7 chr13 40032485 40032792 -79712106 - AluSp SINE Alu -7 306 1 1916 176 83 8 chr13 40032792 40033069 -79711829 + MSTA LTR MaLR 111 428 0 272 226 36 12 chr13 40033125 40033209 -79711689 + L1MC4 LINE L1 7492 7577 -465 934 170 114 55 chr13 40033230 40033591 -79711307 + MSTC LTR MaLR 1 425 -3 461 249 114 72 chr13 40033607 40033940 -79710958 + L1MC4 LINE L1 7621 7967 -75 3227 98 64 2 chr13 40033968 40034500 -79710398 - L1MA2 LINE L1 0 7723 7159 14762 160 15 36 chr13 40034502 40037633 -79707265 - L1MA2 LINE L1 -726 6998 3804 931 136 0 0 chr13 40037633 40037765 -79707133 - FLAM_C SINE Alu -1 132 1 14762 160 15 36 chr13 40037765 40037963 -79706935 - L1MA2 LINE L1 -3920 3804 3753 2517 81 7 0 chr13 40037963 40038272 -79706626 - AluY SINE Alu 0 311 1 14762 160 15 36 chr13 40038272 40038559 -79706339 - L1MA2 LINE L1 -3971 3753 3462 * 16454 132 95 13 chr13 40038553 40038755 -79706143 - L1MA2 LINE L1 -4314 3251 3067 2039 135 14 7 chr13 40038755 40039051 -79705847 - AluSp SINE Alu -15 298 1 16454 132 95 13 chr13 40039051 40039646 -79705252 - L1MA2 LINE L1 -4498 3067 2523 215 61 30 0 chr13 40039646 40039679 -79705219 + (TG)n Simple_repeat Simple_repeat 1 34 0 2072 121 0 0 chr13 40039679 40039959 -79704939 - AluSq SINE Alu -33 280 1 16454 132 95 13 chr13 40039959 40042149 -79702749 - L1MA2 LINE L1 -5041 2524 15 1888 164 11 0 chr13 40042179 40042466 -79702432 + AluJo SINE Alu 1 290 -22 2267 107 0 7 chr13 40042472 40042770 -79702128 + AluSg1 SINE Alu 1 296 -13 2292 100 6 6 chr13 40042939 40043250 -79701648 - AluSx SINE Alu -1 311 1 224 381 36 0 chr13 40043298 40043382 -79701516 + L2 LINE L2 3100 3186 -86 213 39 0 0 chr13 40043495 40043521 -79701377 + (A)n Simple_repeat Simple_repeat 1 26 0 568 189 47 0 chr13 40043733 40043839 -79701059 - FLAM_C SINE Alu -18 125 15 24 0 0 0 chr13 40043941 40043965 -79700933 + AT_rich Low_complexity Low_complexity 1 24 0 286 245 0 101 chr13 40045117 40045276 -79699622 + L1MC4 LINE L1 7837 7979 -63 1762 137 23 50 chr13 40045295 40045594 -79699304 - AluJb SINE Alu -21 291 1 2379 90 0 0 chr13 40046179 40046478 -79698420 + AluSx SINE Alu 1 299 -13 2307 117 3 0 chr13 40046887 40047194 -79697704 + AluSp SINE Alu 1 308 -5 2062 118 27 7 chr13 40047221 40047517 -79697381 + AluSx SINE Alu 5 306 -6 2399 70 3 10 chr13 40048327 40048628 -79696270 - AluY SINE Alu -12 299 1 22 0 0 0 chr13 40049436 40049458 -79695440 + AT_rich Low_complexity Low_complexity 1 22 0 1636 209 133 57 chr13 40049568 40050147 -79694751 + MLT1E3 LTR MaLR 1 623 -1 203 296 235 30 chr13 40051626 40051758 -79693140 + MER5A DNA MER1_type 20 178 0 394 194 107 10 chr13 40051776 40051879 -79693019 + MER5B DNA MER1_type 60 172 -6 2143 124 7 0 chr13 40052100 40052399 -79692499 + AluSx SINE Alu 1 301 -11 1283 106 0 6 chr13 40052831 40053001 -79691897 + AluSc SINE Alu 133 301 -8 1792 131 65 3 chr13 40054179 40054469 -79690429 + AluSc SINE Alu 1 308 -1 1851 157 10 16 chr13 40055455 40055768 -79689130 + AluJo SINE Alu 1 311 -1 1964 114 26 26 chr13 40056365 40056706 -79688192 - L1MA5 LINE L1 -1 6299 5959 2055 127 0 10 chr13 40056989 40057288 -79687610 + AluSx SINE Alu 1 296 -16 226 223 75 53 chr13 40057325 40057419 -79687479 + L1ME4a LINE L1 5955 6050 -71 2386 86 3 0 chr13 40057432 40057734 -79687164 - AluSp SINE Alu -10 303 1 2232 107 0 10 chr13 40057897 40058196 -79686702 - AluSq SINE Alu -17 296 1 389 300 75 33 chr13 40058312 40058552 -79686346 + HAL1 LINE L1 162 411 -2096 939 253 158 40 chr13 40058705 40058929 -79685969 + HAL1 LINE L1 649 845 -1662 1547 168 0 96 chr13 40058929 40059262 -79685636 + AluJb SINE Alu 1 301 -11 939 253 158 40 chr13 40059262 40059994 -79684904 + HAL1 LINE L1 845 1894 -613 480 229 42 0 chr13 40060227 40060371 -79684527 + HAL1 LINE L1 2225 2374 -133 319 240 26 162 chr13 40060394 40060548 -79684350 + HAL1 LINE L1 2353 2485 -22 26 64 0 0 chr13 40060553 40060600 -79684298 + AT_rich Low_complexity Low_complexity 1 47 0 1903 165 0 3 chr13 40061352 40061649 -79683249 - AluJo SINE Alu -16 296 1 965 225 5 10 chr13 40061796 40062005 -79682893 - MER82 DNA MER2_type -2 651 444 383 288 105 21 chr13 40062039 40062230 -79682668 + MIR SINE MIR 8 214 -48 1223 129 0 0 chr13 40062263 40062426 -79682472 - FRAM SINE Alu -14 162 1 382 213 0 0 chr13 40062494 40062569 -79682329 - MER82 DNA MER2_type -577 76 2 1212 180 164 22 chr13 40062607 40062996 -79681902 + MLT1C LTR MaLR 18 461 -6 255 93 0 0 chr13 40062999 40063042 -79681856 + (CA)n Simple_repeat Simple_repeat 2 44 0 704 124 0 18 chr13 40063065 40063178 -79681720 - AluSg/x SINE Alu -3 307 197 309 109 0 0 chr13 40063193 40063248 -79681650 + (CA)n Simple_repeat Simple_repeat 2 56 0 1944 131 3 11 chr13 40063260 40063583 -79681315 - AluSg SINE Alu 0 321 1 2034 153 0 3 chr13 40064106 40064413 -79680485 + AluJb SINE Alu 1 306 -6 1923 232 82 102 chr13 40064479 40064672 -79680226 + L1MC4 LINE L1 6118 6313 -1729 2299 101 0 10 chr13 40064672 40064970 -79679928 - AluSx SINE Alu -17 295 1 1923 232 82 102 chr13 40064970 40066293 -79678605 + L1MC4 LINE L1 6313 7694 -348 695 186 17 8 chr13 40066293 40066411 -79678487 + FLAM_A SINE Alu 2 120 -13 1923 232 82 102 chr13 40066411 40066737 -79678161 + L1MC4 LINE L1 7694 8025 -17 2223 107 0 7 chr13 40067049 40067347 -79677551 + AluSx SINE Alu 1 296 -16 235 164 16 0 chr13 40067918 40067979 -79676919 + L1ME4a LINE L1 6058 6119 -2 1961 147 0 3 chr13 40068214 40068514 -79676384 - AluSg SINE Alu -11 299 1 275 252 9 61 chr13 40068611 40068726 -79676172 - L1ME3A LINE L1 -100 6070 5962 1855 233 76 60 chr13 40068802 40069741 -79675157 - L1MC5 LINE L1 -427 7534 6611 1781 213 95 29 chr13 40069741 40069972 -79674926 + LTR40a LTR ERVL 1 215 -304 1778 153 13 45 chr13 40069972 40070109 -79674789 + AluJo SINE Alu 1 141 -171 2322 106 0 6 chr13 40070109 40070421 -79674477 + AluSg SINE Alu 1 310 0 1778 153 13 45 chr13 40070421 40070596 -79674302 + AluJo SINE Alu 141 303 -9 1781 213 95 29 chr13 40070596 40070847 -79674051 + LTR40a LTR ERVL 215 515 -4 1855 233 76 60 chr13 40070847 40070876 -79674022 - L1MC5 LINE L1 -1350 6611 6553 470 297 87 32 chr13 40071224 40071571 -79673327 - HAL1b LINE L1 -690 658 293 1521 229 151 13 chr13 40071663 40072134 -79672764 + MLT1F LTR MaLR 7 542 0 1776 153 10 17 chr13 40072420 40072715 -79672183 - AluJb SINE Alu -19 293 1 347 274 145 8 chr13 40074040 40074157 -79670741 + MIR SINE MIR 41 173 -89 270 244 13 26 chr13 40074255 40074333 -79670565 + MIR SINE MIR 157 233 -29 5019 171 30 21 chr13 40074380 40075348 -79669550 - ERVL LTR ERVL -3003 2761 1785 1779 136 0 0 chr13 40075349 40075592 -79669306 - AluSx SINE Alu -69 243 1 1190 207 11 11 chr13 40075592 40075853 -79669045 - ERVL LTR ERVL -4159 1605 1345 2431 78 0 0 chr13 40076430 40076725 -79668173 + AluY SINE Alu 1 295 -16 1981 134 50 3 chr13 40076783 40077081 -79667817 - AluSx SINE Alu 0 312 1 21 0 0 0 chr13 40077157 40077178 -79667720 + AT_rich Low_complexity Low_complexity 1 21 0 1866 112 101 0 chr13 40077665 40077933 -79666965 - AluSg SINE Alu -15 295 1 528 262 61 0 chr13 40078120 40078284 -79666614 + MIR SINE MIR 2 175 -87 234 0 0 0 chr13 40078466 40078492 -79666406 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 2138 120 7 0 chr13 40079055 40079347 -79665551 - AluSx SINE Alu -18 294 1 301 256 165 8 chr13 40082226 40082359 -79662539 - Charlie8 DNA MER1_type -2165 252 99 995 175 30 12 chr13 40082382 40082548 -79662350 - FAM SINE Alu -6 169 1 2109 136 0 0 chr13 40082577 40082872 -79662026 + AluSx SINE Alu 1 295 -17 383 386 43 5 chr13 40083258 40083468 -79661430 - L2 LINE L2 -40 3232 3015 2398 78 3 0 chr13 40083496 40083791 -79661107 - AluSg SINE Alu -14 296 1 292 349 186 37 chr13 40083995 40084350 -79660548 - L2 LINE L2 -10 3262 2855 468 246 102 0 chr13 40084631 40084749 -79660149 + MIR SINE MIR 13 142 -120 1348 164 0 9 chr13 40084768 40084981 -79659917 + AluJo SINE Alu 86 296 -16 452 210 34 17 chr13 40084989 40085108 -79659790 + MIR SINE MIR 142 262 0 449 111 0 0 chr13 40085652 40085715 -79659183 + FRAM/FAM SINE Alu 20 82 -94 201 108 0 0 chr13 40085731 40085768 -79659130 + (A)n Simple_repeat Simple_repeat 1 37 0 1757 191 63 14 chr13 40085769 40086585 -79658313 + L1MD3 LINE L1 4969 5403 -743 2353 80 3 10 chr13 40086585 40086897 -79658001 + AluSx SINE Alu 1 310 -2 227 345 0 89 chr13 40086912 40087115 -79657783 + L2 LINE L2 3004 3188 -84 559 177 92 46 chr13 40087410 40087540 -79657358 + FRAM SINE Alu 25 160 -16 2170 111 0 0 chr13 40088219 40088516 -79656382 + AluSq SINE Alu 1 297 -16 255 336 85 44 chr13 40088764 40088943 -79655955 - MIR3 SINE MIR -3 205 17 2193 111 3 10 chr13 40089223 40089529 -79655369 + AluSx SINE Alu 2 305 -7 350 254 22 15 chr13 40089530 40089664 -79655234 + L1ME4a LINE L1 5986 6120 -1 669 202 8 0 chr13 40089847 40089971 -79654927 + FLAM_A SINE Alu 1 125 -8 207 0 0 0 chr13 40090971 40090994 -79653904 + (GGGA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr13 40091373 40091394 -79653504 + AT_rich Low_complexity Low_complexity 1 21 0 626 243 136 15 chr13 40091804 40092010 -79652888 - MIR SINE MIR -27 235 5 522 254 40 8 chr13 40092045 40092171 -79652727 - L2 LINE L2 -2 3311 3182 2360 85 7 0 chr13 40092308 40092603 -79652295 + AluSp SINE Alu 1 297 -16 1093 189 14 112 chr13 40092672 40093007 -79651891 + MLT1A2 LTR MaLR 30 396 22 2359 101 3 0 chr13 40093007 40093314 -79651584 - AluSc SINE Alu -1 308 1 534 135 216 36 chr13 40093314 40093425 -79651473 - AluJo/FLAM SINE Alu -171 131 1 1093 189 14 112 chr13 40093425 40093453 -79651445 + MLT1A2 LTR MaLR 329 358 -16 1908 166 10 0 chr13 40093497 40093799 -79651099 + AluSx SINE Alu 1 305 -7 1082 183 66 87 chr13 40093835 40093880 -79651018 - L1MC5 LINE L1 -315 7646 7602 2420 58 3 16 chr13 40093880 40094189 -79650709 + AluY SINE Alu 2 306 -5 1082 183 66 87 chr13 40094189 40094673 -79650225 - L1MC5 LINE L1 -359 7602 7128 1684 191 17 0 chr13 40094754 40095042 -79649856 + AluJb SINE Alu 1 293 -19 22 35 0 0 chr13 40095090 40095119 -79649779 + AT_rich Low_complexity Low_complexity 1 29 0 266 73 24 0 chr13 40095119 40095160 -79649738 - AluJb SINE Alu -171 131 90 1063 138 0 16 chr13 40095162 40095340 -79649558 - LTR26E LTR ERV1 -283 339 165 373 57 0 0 chr13 40095340 40095393 -79649505 + LTR9 LTR ERV1 1 53 -559 1204 78 10 10 chr13 40095393 40095603 -79649295 - MER4A-int LTR ERV1 -1665 4832 3286 940 150 0 0 chr13 40095603 40095743 -79649155 + AluSg/x SINE Alu 173 312 0 3461 132 76 48 chr13 40095743 40096353 -79648545 - MER4A-int LTR ERV1 -2943 3655 3011 2264 122 0 10 chr13 40096353 40096665 -79648233 - AluSg SINE Alu -1 309 1 3461 132 76 48 chr13 40096665 40096948 -79647950 - MER4A-int LTR ERV1 -3587 3011 2737 1424 114 84 0 chr13 40096948 40097185 -79647713 + LTR8 LTR ERV1 1 257 -434 3831 96 65 7 chr13 40097185 40097891 -79647007 - MER4A-int LTR ERV1 -4103 2495 1749 2128 110 10 16 chr13 40097896 40098206 -79646692 - AluSq SINE Alu -5 308 1 342 0 0 0 chr13 40098222 40098260 -79646638 + (CA)n Simple_repeat Simple_repeat 2 39 0 4256 114 21 9 chr13 40098264 40099151 -79645747 - MER4A-int LTR ERV1 -5616 1142 190 1407 235 70 25 chr13 40099156 40099514 -79645384 - MER4A-int LTR ERV1 -4107 2224 1851 2363 147 51 77 chr13 40099573 40100212 -79644686 - MER4A-int LTR ERV1 -5761 837 42 2495 61 0 0 chr13 40100212 40100509 -79644389 + AluY SINE Alu 1 297 -14 2363 147 51 77 chr13 40100509 40100550 -79644348 - MER4A-int LTR ERV1 -6556 42 1 1384 137 22 142 chr13 40100553 40100746 -79644152 - MER4A LTR ERV1 0 748 534 2239 80 4 0 chr13 40100746 40101022 -79643876 + AluSp SINE Alu 24 300 -13 1384 137 22 142 chr13 40101022 40101217 -79643681 - MER4A LTR ERV1 -214 534 261 664 100 0 20 chr13 40101217 40101317 -79643581 - MER4A LTR ERV1 -566 98 1 * 858 152 7 26 chr13 40101317 40101465 -79643433 - LTR26B LTR ERV1 -386 145 1 524 208 110 29 chr13 40101552 40101725 -79643173 - LTR37A LTR ERV1 0 426 240 620 149 9 28 chr13 40101730 40101829 -79643069 + MER75 DNA T2_type 1 99 -415 199 0 0 61 chr13 40101829 40101862 -79643036 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1212 133 118 0 chr13 40101885 40102080 -79642818 - AluSx SINE Alu -94 218 1 2863 102 19 21 chr13 40102080 40102373 -79642525 + MER75 DNA T2_type 94 386 -128 2319 85 0 0 chr13 40102373 40102667 -79642231 - AluY SINE Alu -17 294 1 2232 116 0 3 chr13 40102667 40102960 -79641938 - AluSx SINE Alu -20 292 1 2863 102 19 21 chr13 40102960 40103088 -79641810 + MER75 DNA T2_type 679 514 0 500 198 45 9 chr13 40103115 40103226 -79641672 - LTR37A LTR ERV1 -229 197 83 2145 129 0 3 chr13 40103345 40103639 -79641259 - AluSx SINE Alu -19 293 1 288 217 0 0 chr13 40103649 40103695 -79641203 - L2 LINE L2 -21 3292 3247 3770 124 144 17 chr13 40103726 40104297 -79640601 + LTR8A LTR ERV1 1 665 -62 1933 142 3 17 chr13 40104297 40104599 -79640299 - AluJb SINE Alu -14 298 1 3770 124 144 17 chr13 40104599 40104672 -79640226 + LTR8A LTR ERV1 665 727 0 2828 166 62 2 chr13 40104672 40105133 -79639765 - MER21B LTR ERV1 -371 492 1 678 146 6 4 chr13 40105207 40105390 -79639508 - MER21B-int LTR ERV1 -56 4135 3873 2404 103 65 0 chr13 40105402 40105743 -79639155 - MER51B LTR ERV1 0 377 15 1049 162 57 29 chr13 40105748 40105958 -79638940 - MER21B-int LTR ERV1 -323 3868 3653 2141 113 44 76 chr13 40105958 40106143 -79638755 + MER4B LTR ERV1 1 190 -420 2333 118 0 3 chr13 40106143 40106457 -79638441 - AluSq SINE Alu 0 313 1 2141 113 44 76 chr13 40106457 40106680 -79638218 + MER4B LTR ERV1 190 396 -214 5598 65 18 22 chr13 40106682 40107105 -79637793 + MER4E LTR ERV1 1 421 -345 2110 125 3 0 chr13 40107105 40107402 -79637496 - AluSg SINE Alu -12 298 1 5598 65 18 22 chr13 40107402 40107742 -79637156 + MER4E LTR ERV1 421 761 -5 1494 108 23 9 chr13 40107741 40107955 -79636943 + MER4E LTR ERV1 563 779 0 * 5140 166 24 38 chr13 40107955 40108879 -79636019 - MER21B-int LTR ERV1 -535 3656 2746 2528 62 0 7 chr13 40109022 40109326 -79635572 + AluY SINE Alu 1 302 -9 1046 195 29 10 chr13 40109426 40109631 -79635267 + AluJo SINE Alu 86 294 -18 409 248 52 46 chr13 40109725 40109878 -79635020 + LTR38 LTR ERV1 403 556 0 5622 186 43 23 chr13 40109878 40110753 -79634145 - MER21B-int LTR ERV1 -1442 2749 1846 2543 21 41 0 chr13 40110753 40111044 -79633854 - AluY SINE Alu -8 303 1 5622 186 43 23 chr13 40111044 40111248 -79633650 - MER21B-int LTR ERV1 -2345 1846 1648 476 151 0 0 chr13 40111294 40111367 -79633531 + AluJo SINE Alu 68 140 -172 1825 108 77 39 chr13 40111371 40111657 -79633241 + AluSx SINE Alu 1 297 -15 525 118 0 0 chr13 40111660 40111736 -79633162 + AluJ/FRAM SINE Alu 232 307 -5 427 140 0 0 chr13 40111809 40111866 -79633032 - AluSc SINE Alu -26 283 227 1802 126 4 0 chr13 40111866 40112120 -79632778 - AluSq SINE Alu -58 255 1 2459 159 128 0 chr13 40112126 40112565 -79632333 + LTR44 LTR ERV1 25 519 0 2159 78 55 42 chr13 40112966 40113274 -79631624 + AluSx SINE Alu 1 312 0 2416 134 98 3 chr13 40114273 40114662 -79630236 - MSTB LTR MaLR 0 426 1 9701 98 8 21 chr13 40115751 40116400 -79628498 + HSMAR1 DNA Mariner 1 657 -630 2196 112 7 10 chr13 40116400 40116703 -79628195 - AluSx SINE Alu -10 302 1 9701 98 8 21 chr13 40116703 40117254 -79627644 + HSMAR1 DNA Mariner 657 1214 -73 2461 67 0 10 chr13 40117254 40117566 -79627332 - AluY SINE Alu -2 309 1 2217 105 0 3 chr13 40117566 40117860 -79627038 - AluSg SINE Alu -17 293 1 9701 98 8 21 chr13 40117860 40117960 -79626938 + HSMAR1 DNA Mariner 1212 1286 -1 2542 71 0 10 chr13 40117978 40118289 -79626609 + AluSp SINE Alu 1 308 -5 1764 187 7 0 chr13 40118343 40118643 -79626255 - AluJb SINE Alu -10 302 1 813 222 10 10 chr13 40119064 40119258 -79625640 + LOR1-int LTR ERV1 1147 1340 -3531 830 164 5 72 chr13 40119339 40119470 -79625428 + LOR1-int LTR ERV1 1374 1489 -3382 2477 73 10 0 chr13 40119470 40119771 -79625127 + AluY SINE Alu 1 304 -7 830 164 5 72 chr13 40119771 40119834 -79625064 + LOR1-int LTR ERV1 1489 1555 -3316 1101 189 7 65 chr13 40119835 40120110 -79624788 + AluJo SINE Alu 31 289 -23 3502 184 84 68 chr13 40120112 40120320 -79624578 + LOR1-int LTR ERV1 1407 1610 -3261 189 0 0 0 chr13 40120320 40120341 -79624557 + (TG)n Simple_repeat Simple_repeat 2 22 0 3502 184 84 68 chr13 40120341 40121089 -79623809 + LOR1-int LTR ERV1 1610 2494 -2377 455 171 79 66 chr13 40121139 40121291 -79623607 + LOR1-int LTR ERV1 1596 1749 -6371 2429 101 0 0 chr13 40121305 40121612 -79623286 + AluSc SINE Alu 1 307 -2 1425 176 43 109 chr13 40121620 40122205 -79622693 + LOR1-int LTR ERV1 1930 2475 -4283 880 168 15 50 chr13 40122292 40122494 -79622404 + LOR1-int LTR ERV1 3536 3730 -2868 1433 156 53 29 chr13 40122543 40122931 -79621967 + LOR1-int LTR ERV1 2474 4657 -1941 861 221 52 0 chr13 40122951 40123105 -79621793 - FRAM SINE Alu -4 162 1 1420 214 27 10 chr13 40123113 40123407 -79621491 - AluJo SINE Alu -7 305 7 699 208 0 8 chr13 40123416 40123541 -79621357 - FLAM_C SINE Alu -9 124 1 786 199 63 101 chr13 40123543 40123890 -79621008 + MER31-int LTR ERV1 2729 3036 -1900 * 1986 170 87 48 chr13 40123883 40124402 -79620496 + MER31-int LTR ERV1 4304 4842 -1489 1256 190 69 84 chr13 40124399 40124731 -79620167 - LTR56-int LTR ERV1 -3924 2407 2081 * 1946 151 3 3 chr13 40124745 40125043 -79619855 - AluSx SINE Alu -14 298 1 252 250 19 74 chr13 40125997 40126065 -79618833 + GA-rich Low_complexity Low_complexity 1 62 -40 2019 117 28 3 chr13 40126065 40126272 -79618626 + AluSx SINE Alu 1 218 -94 189 0 0 0 chr13 40126272 40126293 -79618605 + (TG)n Simple_repeat Simple_repeat 1 21 0 2019 117 28 3 chr13 40126293 40126376 -79618522 + AluSx SINE Alu 218 298 -14 252 250 19 74 chr13 40126376 40126415 -79618483 + GA-rich Low_complexity Low_complexity 62 102 0 1665 209 72 32 chr13 40126730 40127306 -79617592 - LTR56-int LTR ERV1 -4378 745 1 579 149 26 6 chr13 40127306 40127451 -79617447 - LTR56 LTR ERV1 0 467 318 2461 67 0 0 chr13 40127472 40127772 -79617126 + AluY SINE Alu 1 300 -11 584 183 135 0 chr13 40127772 40127876 -79617022 - AluJo/FLAM SINE Alu -193 119 2 1976 95 51 14 chr13 40127877 40128173 -79616725 - LTR23 LTR ERV1 -130 307 1 323 239 76 0 chr13 40128176 40128268 -79616630 + MIR SINE MIR 149 247 -15 1523 186 249 57 chr13 40128398 40128633 -79616265 - LTR48 LTR ERV1 -6 781 593 2152 134 0 0 chr13 40128633 40128931 -79615967 + AluSx SINE Alu 1 298 -14 1523 186 249 57 chr13 40128931 40129188 -79615710 - LTR48 LTR ERV1 -194 593 387 2152 104 0 11 chr13 40129188 40129497 -79615401 - AluSx SINE Alu 0 306 1 1523 186 249 57 chr13 40129497 40129657 -79615241 - LTR48 LTR ERV1 -400 387 1 1972 137 17 10 chr13 40129692 40129992 -79614906 - AluJo SINE Alu -10 302 1 224 30 30 0 chr13 40130248 40130281 -79614617 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 193 313 84 23 chr13 40130379 40130510 -79614388 - L2 LINE L2 -944 2370 2232 203 289 62 52 chr13 40130536 40130633 -79614265 + L2 LINE L2 3205 3302 -11 278 225 94 69 chr13 40130701 40130773 -79614125 - L2 LINE L2 -1219 2095 2026 3372 145 53 8 chr13 40130773 40131303 -79613595 + MER41C LTR ERV1 1 554 0 278 225 94 69 chr13 40131303 40131390 -79613508 - L2 LINE L2 -1288 2026 1932 889 204 7 0 chr13 40131442 40131594 -79613304 - FAM SINE Alu -20 165 13 2261 189 38 5 chr13 40131671 40132120 -79612778 - MER101 LTR ERV1 0 474 11 404 274 36 143 chr13 40132244 40132274 -79612624 + L2 LINE L2 2667 2699 -614 1521 191 0 4 chr13 40132274 40132525 -79612373 - AluJb SINE Alu -62 250 1 404 274 36 143 chr13 40132525 40132611 -79612287 + L2 LINE L2 2699 2793 -520 198 71 0 0 chr13 40132611 40132639 -79612259 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 404 274 36 143 chr13 40132639 40133150 -79611748 + L2 LINE L2 2793 3219 -94 2545 52 0 7 chr13 40133268 40133576 -79611322 + AluY SINE Alu 1 306 -5 2482 106 116 40 chr13 40134335 40134512 -79610386 + MSTA LTR MaLR 1 163 -265 2055 116 28 0 chr13 40134512 40134796 -79610102 + AluSg SINE Alu 2 293 -17 2482 106 116 40 chr13 40134796 40135016 -79609882 + MSTA LTR MaLR 163 428 0 3583 126 18 27 chr13 40135881 40136360 -79608538 - L1PA15 LINE L1 0 6165 5690 1403 133 152 4 chr13 40136360 40136509 -79608389 - AluSq SINE Alu -19 294 168 378 0 0 0 chr13 40136509 40136551 -79608347 + (TG)n Simple_repeat Simple_repeat 2 43 0 1403 133 152 4 chr13 40136551 40136657 -79608241 - AluSq SINE Alu -145 168 1 3583 126 18 27 chr13 40136657 40136724 -79608174 - L1PA15 LINE L1 -475 5690 5624 2237 107 3 0 chr13 40136885 40137184 -79607714 + AluSp SINE Alu 4 303 -10 2104 84 3 14 chr13 40137556 40137842 -79607056 + AluSc SINE Alu 1 283 -26 33 0 0 0 chr13 40140129 40140162 -79604736 + AT_rich Low_complexity Low_complexity 1 33 0 693 198 0 8 chr13 40140406 40140527 -79604371 - FLAM_C SINE Alu -13 120 1 248 266 85 43 chr13 40140891 40140985 -79603913 - MIR SINE MIR -61 147 50 959 113 35 0 chr13 40141027 40141168 -79603730 - AluSg/x SINE Alu -10 302 157 546 217 106 81 chr13 40141185 40141420 -79603478 + MIR SINE MIR 22 262 0 23 0 0 0 chr13 40141569 40141592 -79603306 + AT_rich Low_complexity Low_complexity 1 23 0 457 305 121 51 chr13 40141846 40141877 -79603021 - L2 LINE L2 -62 3251 3224 1408 160 63 63 chr13 40141877 40142177 -79602721 + AluJo SINE Alu 1 300 -12 457 305 121 51 chr13 40142177 40142535 -79602363 - L2 LINE L2 -89 3224 2835 275 316 148 7 chr13 40142670 40142825 -79602073 + MIR SINE MIR 79 255 -7 1525 199 4 0 chr13 40142946 40143212 -79601686 - AluJo SINE Alu -20 292 26 1239 134 0 0 chr13 40143293 40143472 -79601426 - AluSg/x SINE Alu -8 302 124 2310 83 7 0 chr13 40143473 40143762 -79601136 - AluSx SINE Alu -11 301 11 2209 115 14 0 chr13 40145373 40145669 -79599229 - AluSq SINE Alu -13 300 1 2132 126 0 10 chr13 40146683 40146984 -79597914 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 40146984 40147005 -79597893 + AT_rich Low_complexity Low_complexity 1 21 0 206 241 0 0 chr13 40147021 40147075 -79597823 + T-rich Low_complexity Low_complexity 5 58 0 474 192 10 120 chr13 40147545 40147753 -79597145 - L1MC5 LINE L1 -33 7928 7744 1792 166 14 3 chr13 40148189 40148484 -79596414 + AluJo SINE Alu 5 302 -10 849 160 0 0 chr13 40148525 40148644 -79596254 - FLAM_C SINE Alu -14 119 1 240 330 0 11 chr13 40148845 40148936 -79595962 + L2 LINE L2 2271 2360 -954 1348 128 27 14 chr13 40199618 40199837 -79545061 + AluSq SINE Alu 1 222 -91 1216 222 225 21 chr13 40199841 40200716 -79544182 - SATR1 Satellite Satellite -96 1053 1 964 219 193 27 chr13 40201899 40202308 -79542590 - SATR1 Satellite Satellite -2 476 1 1149 215 263 33 chr13 40202355 40203203 -79541695 - SATR1 Satellite Satellite -51 1042 1 1203 216 238 41 chr13 40203268 40204490 -79540408 - SATR1 Satellite Satellite -95 1463 1 1084 230 252 28 chr13 40204536 40205866 -79539032 - SATR1 Satellite Satellite -51 1627 1 1296 217 278 7 chr13 40205900 40208649 -79536249 - SATR1 Satellite Satellite -1 3494 1 1129 229 240 40 chr13 40208664 40210246 -79534652 - SATR1 Satellite Satellite -2 1898 1 2064 202 108 9 chr13 40210306 40211642 -79533256 - SATR1 Satellite Satellite -1 1468 1 248 216 5 88 chr13 40211729 40211923 -79532975 + (TTA)n Simple_repeat Simple_repeat 1 178 0 2295 180 104 21 chr13 40212020 40213720 -79531178 - SATR1 Satellite Satellite 0 1841 1 808 172 45 45 chr13 40213867 40214065 -79530833 + LTR2 LTR ERV1 235 432 -17 514 83 0 0 chr13 40214090 40214162 -79530736 - tRNA-Glu-GAG tRNA tRNA -2 73 2 3148 105 14 0 chr13 40214163 40214602 -79530296 + HERVE LTR ERV1 647 1091 -6722 381 210 36 51 chr13 40214603 40214741 -79530157 - L1M LINE L1 -774 5390 5255 1220 80 0 0 chr13 40214746 40214897 -79530001 + AluSp SINE Alu 1 151 -162 22 80 0 0 chr13 40215632 40215682 -79529216 + GC_rich Low_complexity Low_complexity 1 50 0 28 48 0 0 chr13 40215879 40215921 -79528977 + GC_rich Low_complexity Low_complexity 1 42 0 189 290 137 0 chr13 40216179 40216303 -79528595 + MIR SINE MIR 46 186 -76 186 133 0 0 chr13 40216706 40216736 -79528162 + MIR SINE MIR 117 146 -62 216 67 0 0 chr13 40217329 40217359 -79527539 + (CAA)n Simple_repeat Simple_repeat 1 30 0 324 48 0 0 chr13 40221628 40221670 -79523228 + (TG)n Simple_repeat Simple_repeat 1 42 0 438 261 118 6 chr13 40223622 40223783 -79521115 - MIR3 SINE MIR 0 208 30 218 206 0 16 chr13 40224225 40224288 -79520610 + (CA)n Simple_repeat Simple_repeat 2 63 0 608 176 6 0 chr13 40224299 40224469 -79520429 + (CA)n Simple_repeat Simple_repeat 1 171 0 2162 119 0 7 chr13 40224564 40224857 -79520041 - AluSx SINE Alu -21 291 1 222 37 0 0 chr13 40226904 40226931 -79517967 + (TC)n Simple_repeat Simple_repeat 1 27 0 2179 90 7 4 chr13 40227145 40227424 -79517474 + AluSx SINE Alu 1 280 -32 303 28 0 0 chr13 40227426 40227462 -79517436 + (TAA)n Simple_repeat Simple_repeat 2 37 0 342 0 0 0 chr13 40227462 40227500 -79517398 + (GAA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr13 40229059 40229080 -79515818 + AT_rich Low_complexity Low_complexity 1 21 0 3572 135 86 26 chr13 40229895 40230513 -79514385 - L1MB7 LINE L1 0 6184 5415 2425 66 7 3 chr13 40230513 40230815 -79514083 - AluY SINE Alu -8 303 1 3572 135 86 26 chr13 40230815 40230960 -79513938 - L1MB7 LINE L1 -769 5415 5280 * 7028 118 29 4 chr13 40230948 40232519 -79512379 - L1MA2 LINE L1 0 7723 6115 32535 106 15 51 chr13 40232523 40238900 -79505998 - L1PA7 LINE L1 -4 6150 12 5373 136 26 1 chr13 40238912 40239824 -79505074 - L1MA2 LINE L1 -1434 6131 5197 3858 70 6 6 chr13 40239824 40240323 -79504575 - L1PA7 LINE L1 0 6154 5656 5265 80 0 0 chr13 40240323 40241012 -79503886 + L1P LINE L1 3753 4441 -1705 * 20893 147 39 30 chr13 40240983 40241740 -79503158 - L1MA2 LINE L1 -2330 5235 4486 2455 76 0 3 chr13 40241740 40242043 -79502855 + AluSq SINE Alu 5 306 -7 20893 147 39 30 chr13 40242043 40242980 -79501918 - L1MA2 LINE L1 -3079 4486 3559 2180 123 0 10 chr13 40242980 40243281 -79501617 - AluSq SINE Alu -15 298 1 20893 147 39 30 chr13 40243281 40245110 -79499788 - L1MA2 LINE L1 -4006 3559 1649 198 0 0 0 chr13 40245110 40245132 -79499766 + (TC)n Simple_repeat Simple_repeat 2 23 0 20893 147 39 30 chr13 40245132 40246786 -79498112 - L1MA2 LINE L1 -5916 1649 11 1871 172 7 3 chr13 40246817 40247119 -79497779 - AluJo SINE Alu -9 303 1 4854 192 42 54 chr13 40247120 40247348 -79497550 - L1M4 LINE L1 -858 5288 5059 2450 64 3 0 chr13 40247348 40247643 -79497255 - AluY SINE Alu -15 296 1 4854 192 42 54 chr13 40247643 40248053 -79496845 - L1M4 LINE L1 -1087 5059 4646 750 163 0 22 chr13 40248053 40248188 -79496710 - FLAM_C SINE Alu -1 132 1 4854 192 42 54 chr13 40248188 40248834 -79496064 - L1M4 LINE L1 -1500 4646 4018 225 0 0 0 chr13 40249179 40249204 -79495694 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 387 0 0 0 chr13 40249203 40249246 -79495652 + (TG)n Simple_repeat Simple_repeat 1 43 0 279 208 13 52 chr13 40249435 40249512 -79495386 - MER103 DNA DNA -8 158 85 1029 262 80 17 chr13 40249538 40249924 -79494974 - MLT1J LTR MaLR -34 477 1 265 186 0 0 chr13 40249924 40249966 -79494932 - MER103 DNA DNA -74 92 51 582 244 45 24 chr13 40250575 40250780 -79494118 + MIR SINE MIR 11 229 -33 188 242 200 11 chr13 40250945 40251040 -79493858 + MIR SINE MIR 19 131 -77 571 269 55 79 chr13 40251457 40251830 -79493068 + L2 LINE L2 2910 3270 -2 276 154 0 0 chr13 40252282 40252334 -79492564 + (TG)n Simple_repeat Simple_repeat 1 52 0 243 208 14 83 chr13 40253076 40253148 -79491750 - MIR3 SINE MIR -41 167 101 261 270 67 22 chr13 40253996 40254085 -79490813 + L3b LINE CR1 1151 1243 -340 1569 171 14 10 chr13 40254106 40254398 -79490500 + AluJo SINE Alu 1 293 -19 338 189 245 0 chr13 40255125 40255231 -79489667 - MIR SINE MIR -70 192 61 241 293 150 14 chr13 40256026 40256166 -79488732 + MIR SINE MIR 54 212 -50 432 0 0 0 chr13 40256286 40256334 -79488564 + (CA)n Simple_repeat Simple_repeat 2 49 0 290 245 71 20 chr13 40256339 40256437 -79488461 - L1ME3 LINE L1 -95 6067 5965 234 308 11 33 chr13 40256720 40256811 -79488087 + L2 LINE L2 3141 3229 -43 695 223 0 0 chr13 40256918 40257048 -79487850 + FLAM_C SINE Alu 2 131 -2 24 0 0 0 chr13 40257207 40257231 -79487667 + AT_rich Low_complexity Low_complexity 1 24 0 2616 197 7 45 chr13 40257886 40257969 -79486929 - L1MB7 LINE L1 -1 6183 6098 1759 146 3 14 chr13 40257969 40258264 -79486634 + AluJb SINE Alu 1 292 -20 2616 197 7 45 chr13 40258264 40258774 -79486124 - L1MB7 LINE L1 -86 6098 5613 188 319 110 11 chr13 40258927 40259018 -79485880 + L2 LINE L2 2950 3049 -223 * 248 283 124 9 chr13 40259007 40259120 -79485778 - L2 LINE L2 -63 3250 3125 744 288 91 30 chr13 40259180 40259548 -79485350 + MLT1J2 LTR MaLR 71 440 -10 1688 160 3 30 chr13 40259719 40260019 -79484879 + AluJb SINE Alu 1 292 -20 833 148 0 0 chr13 40261328 40261456 -79483442 - FRAM SINE Alu -9 167 40 799 252 70 21 chr13 40261459 40261701 -79483197 - MIR SINE MIR -1 261 8 204 158 0 0 chr13 40261858 40261896 -79483002 + GA-rich Low_complexity Low_complexity 3 40 0 2719 107 3 3 chr13 40262143 40262507 -79482391 - THE1B LTR MaLR 0 364 1 3932 98 24 5 chr13 40262771 40263351 -79481547 + L1PB1 LINE L1 5561 6151 0 553 289 90 61 chr13 40263445 40263890 -79481008 + MLT1H LTR MaLR 1 547 -2 366 244 130 0 chr13 40264343 40264458 -79480440 - L1ME4a LINE L1 0 6121 5992 393 305 30 30 chr13 40264487 40264701 -79480197 - L1ME4a LINE L1 -226 5895 5679 1584 183 10 16 chr13 40264701 40265007 -79479891 - AluJb SINE Alu -8 304 1 393 305 30 30 chr13 40265007 40265054 -79479844 - L1ME4a LINE L1 -441 5680 5634 315 0 0 0 chr13 40265063 40265098 -79479800 + (CA)n Simple_repeat Simple_repeat 2 36 0 2355 110 19 45 chr13 40265108 40265482 -79479416 - THE1B LTR MaLR 0 364 1 7157 89 4 1 chr13 40265482 40266400 -79478498 - THE1B-int LTR MaLR 0 1580 660 3092 76 21 7 chr13 40266396 40266818 -79478080 - THE1B-int LTR MaLR -1152 428 1 * 600 116 0 12 chr13 40266818 40266904 -79477994 - THE1B LTR MaLR 0 375 291 274 226 45 11 chr13 40266947 40267035 -79477863 + L1ME LINE L1 5513 5612 -509 450 123 235 0 chr13 40267039 40267120 -79477778 + AluJ/FLAM SINE Alu 2 101 -211 3565 151 50 18 chr13 40268246 40268850 -79476048 - MER21B LTR ERV1 -113 750 128 361 238 42 35 chr13 40268852 40268995 -79475903 + L1MEc LINE L1 356 499 -5897 719 176 58 5 chr13 40268996 40269216 -79475682 + L1M4 LINE L1 4897 5182 -964 2144 147 97 1 chr13 40269294 40269798 -79475100 - L1ME4a LINE L1 -666 5518 4964 417 234 73 8 chr13 40269804 40269928 -79474970 + L1MA10 LINE L1 6201 6332 -2 384 274 112 80 chr13 40269932 40270246 -79474652 - L1ME4a LINE L1 -4 6117 5794 835 186 13 46 chr13 40271074 40271393 -79473505 - MLT1A1 LTR MaLR -2 372 15 488 256 184 23 chr13 40271396 40271662 -79473236 - L2 LINE L2 -23 3249 2941 367 256 77 10 chr13 40272146 40272302 -79472596 - MIR SINE MIR 0 262 40 563 257 29 12 chr13 40272376 40272547 -79472351 - L2 LINE L2 -31 3282 3109 1458 136 55 0 chr13 40273129 40273365 -79471533 - AluSx SINE Alu -8 304 56 790 159 166 18 chr13 40273370 40273533 -79471365 - MER21B LTR ERV1 -113 750 564 572 90 0 0 chr13 40273540 40273618 -79471280 - AluSx SINE Alu -234 79 2 358 250 43 26 chr13 40274322 40274438 -79470460 + MIR SINE MIR 80 197 -65 302 278 19 9 chr13 40274682 40274790 -79470108 - MER103 DNA DNA -12 154 46 1275 171 22 44 chr13 40275010 40275284 -79469614 - L1MD3 LINE L1 0 7995 7728 874 256 107 90 chr13 40276005 40276528 -79468370 + MLT1L LTR MaLR 1 532 -83 1131 189 89 5 chr13 40276667 40277038 -79467860 - MLT1D LTR MaLR 0 505 3 186 133 0 0 chr13 40277231 40277261 -79467637 + (GA)n Simple_repeat Simple_repeat 1 30 0 427 268 36 0 chr13 40279439 40279577 -79465321 - LTR67 LTR ERVL -2 555 413 839 115 94 120 chr13 40280141 40280310 -79464588 - L1MA9 LINE L1 0 6312 6149 342 0 0 0 chr13 40280310 40280348 -79464550 + (TG)n Simple_repeat Simple_repeat 1 38 0 839 115 94 120 chr13 40280348 40280412 -79464486 - L1MA9 LINE L1 -163 6149 6085 2082 112 10 0 chr13 40280625 40280921 -79463977 + AluSx SINE Alu 1 299 -13 213 225 292 13 chr13 40281340 40281474 -79463424 - MIR SINE MIR -48 214 29 253 343 76 35 chr13 40281674 40281846 -79463052 + MIR SINE MIR 4 182 -80 695 99 124 25 chr13 40282725 40282846 -79462052 + THE1C LTR MaLR 194 326 -49 690 229 0 14 chr13 40282875 40283015 -79461883 + FLAM_A SINE Alu 2 139 -3 1053 324 75 15 chr13 40283107 40283626 -79461272 + L2 LINE L2 1745 2294 -1020 749 211 0 0 chr13 40283657 40283790 -79461108 + FLAM_A SINE Alu 1 133 0 315 221 18 62 chr13 40283820 40283933 -79460965 - L1MC4 LINE L1 -17 8025 7918 203 186 51 17 chr13 40283948 40284007 -79460891 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 766 193 54 170 chr13 40284008 40284217 -79460681 - L1MC4 LINE L1 -124 7918 7686 448 143 0 0 chr13 40284217 40284294 -79460604 - L1PB1 LINE L1 -1 6150 6074 766 193 54 170 chr13 40284294 40284520 -79460378 - L1MC4 LINE L1 -356 7686 7450 558 318 13 0 chr13 40284525 40284676 -79460222 - MIR SINE MIR -76 186 34 1346 254 27 70 chr13 40284771 40285331 -79459567 - L1MC4 LINE L1 -469 7573 7038 699 268 26 26 chr13 40285370 40285598 -79459300 + L2 LINE L2 2290 2517 -797 653 239 14 7 chr13 40285672 40285814 -79459084 + MER5B DNA MER1_type 2 144 -34 1376 196 109 16 chr13 40286341 40286718 -79458180 + MER66A LTR ERV1 27 438 -40 580 324 109 37 chr13 40287132 40288309 -79456589 + L1MC4a LINE L1 3683 4957 -1189 1637 179 18 72 chr13 40288309 40288695 -79456203 + MLT1A1 LTR MaLR 1 365 0 580 324 109 37 chr13 40288695 40288779 -79456119 + L1MC4a LINE L1 4957 5034 -1112 1023 264 138 24 chr13 40288999 40289541 -79455357 + L1MC4a LINE L1 5264 5867 -1941 520 302 58 39 chr13 40289777 40289865 -79455033 + L1M4 LINE L1 4741 4826 -1320 2170 144 5 57 chr13 40289865 40290248 -79454650 - MLT1A1 LTR MaLR 0 365 3 520 302 58 39 chr13 40290248 40290523 -79454375 + L1M4 LINE L1 4826 5111 -1035 674 184 40 0 chr13 40290546 40290671 -79454227 + FLAM_A SINE Alu 1 130 -3 889 61 0 0 chr13 40290888 40291002 -79453896 - L1PA5 LINE L1 -2 6152 6039 773 173 0 29 chr13 40291052 40291191 -79453707 - AluJo SINE Alu -175 137 3 265 318 10 42 chr13 40291195 40291387 -79453511 + HAL1 LINE L1 1278 1463 -1044 1952 122 3 0 chr13 40292458 40292745 -79452153 - AluSg SINE Alu -22 288 1 45497 33 4 1 chr13 40292918 40299035 -79445863 - L1PA4 LINE L1 -3 6152 12 1829 252 31 35 chr13 40299458 40299978 -79444920 + MER97c DNA MER1_type? 1 518 -572 270 270 144 47 chr13 40300075 40300290 -79444608 + MER97c DNA MER1_type? 824 1059 -31 249 250 0 0 chr13 40300993 40301045 -79443853 + LTR30 LTR ERV1 1 52 -670 2338 81 169 157 chr13 40301045 40301638 -79443260 + LTR12 LTR ERV1 57 581 -133 846 219 0 0 chr13 40301778 40301942 -79442956 - FAM SINE Alu -16 169 6 1338 257 82 21 chr13 40301952 40302376 -79442522 + MER74B LTR ERVL 91 540 -82 259 250 68 0 chr13 40302307 40302395 -79442503 - MER88 LTR ERVL -291 173 80 * 396 0 0 0 chr13 40302896 40302940 -79441958 + (CA)n Simple_repeat Simple_repeat 2 45 0 795 346 38 3 chr13 40302955 40303302 -79441596 + MER115 DNA AcHobo 3 361 -332 240 35 0 0 chr13 40304986 40305015 -79439883 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr13 40306954 40306976 -79437922 + AT_rich Low_complexity Low_complexity 1 22 0 808 241 72 14 chr13 40307193 40307400 -79437498 + MER20 DNA MER1_type 1 219 0 354 249 137 29 chr13 40308100 40308305 -79436593 + L1MC5 LINE L1 7701 7927 -34 575 254 103 82 chr13 40309060 40309553 -79435345 - MLT1H LTR MaLR -4 545 1 410 243 196 0 chr13 40310975 40311123 -79433775 - MER5B DNA MER1_type -1 177 1 1786 279 71 1 chr13 40311483 40312150 -79432748 + L2 LINE L2 2396 3145 -168 2033 137 0 10 chr13 40312150 40312449 -79432449 - AluJb SINE Alu -6 306 11 1786 279 71 1 chr13 40312449 40312631 -79432267 + L2 LINE L2 3145 3313 0 182 294 119 24 chr13 40313442 40313568 -79431330 - MIR SINE MIR -19 243 106 1157 209 0 5 chr13 40313578 40313793 -79431105 + L1MB7 LINE L1 1 214 -6328 * 5606 174 48 13 chr13 40313790 40314913 -79429985 + L1MB7 LINE L1 4761 5976 -706 2075 137 7 0 chr13 40314913 40315206 -79429692 + AluSx SINE Alu 1 295 -17 5606 174 48 13 chr13 40315206 40315921 -79428977 + L1MB7 LINE L1 5976 6664 -18 21 36 0 0 chr13 40315922 40315950 -79428948 + AT_rich Low_complexity Low_complexity 1 28 0 401 198 10 0 chr13 40316481 40316582 -79428316 + (TCCA)n Simple_repeat Simple_repeat 4 105 0 1775 208 14 14 chr13 40317953 40318318 -79426580 - MLT1A1 LTR MaLR 0 365 1 430 223 37 15 chr13 40318408 40318562 -79426336 - MLT1I LTR MaLR -206 203 46 416 242 33 0 chr13 40318821 40318941 -79425957 + MIR SINE MIR 136 259 -3 24 53 0 0 chr13 40318943 40318981 -79425917 + AT_rich Low_complexity Low_complexity 1 38 0 907 160 0 13 chr13 40319125 40319275 -79425623 - AluJo SINE Alu -161 151 4 354 23 0 0 chr13 40321956 40321999 -79422899 + (CA)n Simple_repeat Simple_repeat 2 44 0 205 214 125 0 chr13 40322467 40322523 -79422375 - MIR SINE MIR -85 123 61 1938 166 0 22 chr13 40322661 40322980 -79421918 + AluJb SINE Alu 1 312 0 359 244 17 26 chr13 40324538 40324653 -79420245 + MIR SINE MIR 46 159 -103 478 278 29 17 chr13 40324685 40324858 -79420040 + MIR SINE MIR 88 262 0 200 216 0 0 chr13 40326928 40326965 -79417933 + CT-rich Low_complexity Low_complexity 3 39 0 263 323 16 8 chr13 40328115 40328239 -79416659 + (TA)n Simple_repeat Simple_repeat 1 125 0 34 24 0 0 chr13 40328402 40328443 -79416455 + AT_rich Low_complexity Low_complexity 1 41 0 186 232 0 54 chr13 40328468 40328524 -79416374 + L2 LINE L2 3180 3232 -81 231 143 0 0 chr13 40329399 40329434 -79415464 + L1P LINE L1 4204 4238 -1908 615 9 0 73 chr13 40329434 40329544 -79415354 + (TCTCCC)n Simple_repeat Simple_repeat 4 105 0 6922 76 13 8 chr13 40329564 40330981 -79413917 + SVA Other Other 78 1386 0 2081 138 0 3 chr13 40330994 40331298 -79413600 + AluSg SINE Alu 1 303 -7 1784 144 27 33 chr13 40331300 40331599 -79413299 + AluSx SINE Alu 1 297 -15 287 100 0 0 chr13 40331599 40331639 -79413259 + L1MA2 LINE L1 6069 6108 -196 529 174 15 0 chr13 40331653 40331785 -79413113 + (TA)n Simple_repeat Simple_repeat 2 135 0 1705 138 0 21 chr13 40331799 40332088 -79412810 - AluSx SINE Alu -29 283 1 1138 143 10 0 chr13 40332088 40332284 -79412614 + L1MA2 LINE L1 6107 6304 0 2841 188 7 0 chr13 40332370 40332938 -79411960 + L1 LINE L1 4270 4841 -1305 4459 76 20 19 chr13 40332938 40333585 -79411313 + L1PB2 LINE L1 5504 6151 0 2246 263 57 13 chr13 40334796 40335394 -79409504 - MER115 DNA AcHobo -10 683 60 193 219 16 16 chr13 40336292 40336356 -79408542 + CT-rich Low_complexity Low_complexity 4 67 0 261 239 119 28 chr13 40337611 40337720 -79407178 + MIR3 SINE MIR 51 169 -39 181 313 240 0 chr13 40337905 40338001 -79406897 - MIR SINE MIR -62 146 28 1903 160 3 26 chr13 40338009 40338321 -79406577 - AluJo SINE Alu -7 305 1 439 298 101 6 chr13 40338881 40339039 -79405859 + MIR3 SINE MIR 23 195 -13 2364 28 7 11 chr13 40339145 40339468 -79405430 - AluY SINE Alu 0 322 1 450 234 0 2 chr13 40341165 40341255 -79403643 - MER2 DNA MER2_type -150 89 1 940 230 72 122 chr13 40341448 40341528 -79403370 + L1MC4 LINE L1 7355 7437 -605 2440 90 0 3 chr13 40341528 40341839 -79403059 + AluSg SINE Alu 1 310 0 940 230 72 122 chr13 40341839 40342359 -79402539 + L1MC4 LINE L1 7437 8042 0 273 306 68 14 chr13 40342419 40342566 -79402332 + MIR3 SINE MIR 42 196 -12 2547 78 0 0 chr13 40343750 40344058 -79400840 + AluSg SINE Alu 1 308 -2 1674 199 6 3 chr13 40346605 40346916 -79397982 + AluJo SINE Alu 1 312 0 21 0 0 0 chr13 40346949 40346970 -79397928 + AT_rich Low_complexity Low_complexity 1 21 0 1088 260 122 26 chr13 40347620 40347661 -79397237 + LTR33 LTR ERVL 55 91 -430 1957 211 127 10 chr13 40347661 40348238 -79396660 + LTR48B LTR ERV1 1 644 0 1088 260 122 26 chr13 40348238 40348615 -79396283 + LTR33 LTR ERVL 91 513 -8 192 152 0 0 chr13 40348647 40348680 -79396218 + T-rich Low_complexity Low_complexity 1 33 0 7963 12 0 1 chr13 40349689 40350665 -79394233 + L1PA3 LINE L1 5199 6173 0 459 212 62 27 chr13 40350749 40350895 -79394003 - L1MEc LINE L1 -5341 1055 905 356 308 14 5 chr13 40350935 40351070 -79393828 + MIR SINE MIR 52 187 -62 1696 144 17 50 chr13 40352285 40352584 -79392314 - AluJo SINE Alu -11 301 13 396 330 189 3 chr13 40352927 40353245 -79391653 + HsTC2 DNA Tc2 242 618 -1280 1935 217 93 28 chr13 40353579 40354231 -79390667 - L1ME3A LINE L1 -23 6141 5420 405 0 0 0 chr13 40354955 40355000 -79389898 + (CA)n Simple_repeat Simple_repeat 2 46 0 976 246 68 73 chr13 40355858 40356268 -79388630 + L2 LINE L2 2302 2709 -605 450 288 61 69 chr13 40356598 40357119 -79387779 - HAL1b LINE L1 -597 751 235 272 288 0 0 chr13 40357193 40357259 -79387639 - L2 LINE L2 0 3313 3248 317 279 115 8 chr13 40358120 40358242 -79386656 + MLT1L LTR MaLR 132 266 -349 534 251 65 17 chr13 40358348 40358605 -79386293 + MLT1L LTR MaLR 260 612 -3 5662 199 15 4 chr13 40359048 40360316 -79384582 + L1P LINE L1 3220 4501 -1645 3318 27 2 0 chr13 40360341 40360903 -79383995 + L1P2 LINE L1 5107 5669 -486 286 153 0 17 chr13 40361003 40361062 -79383836 + MER51B-int LTR ERV1 3146 3203 -4613 * 949 94 19 0 chr13 40361057 40361216 -79383682 + MER51B-int LTR ERV1 6085 6246 -1570 1502 145 0 4 chr13 40361219 40361460 -79383438 + MER51B-int LTR ERV1 7576 7815 -1 1497 100 124 0 chr13 40361462 40361712 -79383186 + MER51B LTR ERV1 1 281 -96 1225 119 2 20 chr13 40361742 40361969 -79382929 + L1PA15 LINE L1 5476 5701 -462 1819 151 16 70 chr13 40362019 40362308 -79382590 + L1PA15 LINE L1 5685 5951 -214 2394 97 0 0 chr13 40362308 40362616 -79382282 + AluSc SINE Alu 1 308 -1 1819 151 16 70 chr13 40362616 40362697 -79382201 + L1PA15 LINE L1 5951 6035 -130 444 143 20 20 chr13 40362702 40362779 -79382119 + L1 LINE L1 4376 4455 -1691 692 151 0 8 chr13 40362779 40362902 -79381996 + L1PA15 LINE L1 6041 6165 0 444 143 20 20 chr13 40362902 40362922 -79381976 + L1 LINE L1 4454 4473 -1673 940 174 24 42 chr13 40363718 40363930 -79380968 + MER3 DNA MER1_type 2 209 0 242 111 0 0 chr13 40364082 40364118 -79380780 + Alu SINE Alu 3 38 -264 2331 105 0 0 chr13 40364217 40364512 -79380386 - AluSx SINE Alu -12 300 6 6821 58 7 0 chr13 40364589 40366099 -79378799 - L1PA6 LINE L1 -2 6152 4625 8610 60 1 0 chr13 40366199 40367371 -79377527 - L1PA6 LINE L1 -1996 4150 2978 314 331 29 11 chr13 40367377 40367552 -79377346 - MARNA DNA Mariner -119 467 290 426 287 15 29 chr13 40367563 40367699 -79377199 + MIR3 SINE MIR 74 207 -1 345 250 92 43 chr13 40367700 40367775 -79377123 - MARNA DNA Mariner -286 300 230 2135 170 6 6 chr13 40367775 40368139 -79376759 + MER47A DNA MER2_type 3 366 0 345 250 92 43 chr13 40368139 40368227 -79376671 - MARNA DNA Mariner -356 230 129 24 0 0 0 chr13 40368277 40368301 -79376597 + AT_rich Low_complexity Low_complexity 1 24 0 259 313 155 51 chr13 40369641 40370015 -79374883 + L2 LINE L2 2247 2659 -655 281 339 67 67 chr13 40370100 40370416 -79374482 + L2 LINE L2 2932 3247 -25 230 305 39 94 chr13 40371411 40371539 -79373359 + MIR SINE MIR 67 187 -75 259 336 82 0 chr13 40371549 40371671 -79373227 + MIR SINE MIR 123 254 -8 317 238 0 0 chr13 40371860 40371923 -79372975 + MIR SINE MIR 200 262 0 303 284 140 36 chr13 40371936 40372158 -79372740 - L3b LINE CR1 -118 1465 1221 402 349 32 16 chr13 40372531 40372720 -79372178 + L2 LINE L2 2866 3057 -215 732 224 120 26 chr13 40374279 40374471 -79370427 + MER63A DNA MER1_type 1 210 0 549 332 71 42 chr13 40374758 40375138 -79369760 + L2 LINE L2 2880 3270 -2 448 178 92 72 chr13 40375812 40375964 -79368934 + MER112 DNA MER1_type 6 160 -100 300 276 51 41 chr13 40375966 40376064 -79368834 + L2 LINE L2 3167 3265 -7 249 303 72 59 chr13 40376971 40377123 -79367775 - MIR SINE MIR -60 202 49 280 299 0 35 chr13 40377373 40377460 -79367438 - Charlie8 DNA MER1_type -2332 85 2 818 226 127 0 chr13 40377601 40377782 -79367116 + MIR SINE MIR 37 240 -22 398 222 129 46 chr13 40379410 40379604 -79365294 - MIR SINE MIR -7 255 46 489 285 48 5 chr13 40380910 40381096 -79363802 - L2 LINE L2 -2 3311 3118 386 241 136 27 chr13 40381181 40381438 -79363460 + L1MC5 LINE L1 7631 7915 -46 213 349 40 20 chr13 40382153 40382305 -79362593 - MIR SINE MIR -49 213 59 461 318 19 26 chr13 40383440 40383594 -79361304 + MIR3 SINE MIR 16 168 -40 305 318 55 18 chr13 40383813 40383923 -79360975 + MIR SINE MIR 36 149 -59 522 211 53 119 chr13 40383933 40384270 -79360628 + HAL1 LINE L1 2081 2395 -112 555 253 60 134 chr13 40384393 40384729 -79360169 - L2 LINE L2 -19 3253 2943 7608 25 7 0 chr13 40385002 40386433 -79358465 + L1PA4 LINE L1 4700 6154 -1 25 0 0 0 chr13 40386433 40386458 -79358440 + AT_rich Low_complexity Low_complexity 1 25 0 314 339 63 25 chr13 40386765 40386927 -79357971 + MIR SINE MIR 26 192 -65 337 292 18 35 chr13 40386929 40387042 -79357856 + MIR3 SINE MIR 73 183 -25 796 300 171 32 chr13 40387281 40388007 -79356891 - L2 LINE L2 -1191 2123 1297 1346 111 0 53 chr13 40388570 40388796 -79356102 + L1PA15 LINE L1 5939 6152 -13 354 231 157 0 chr13 40390828 40390936 -79353962 - MER94 DNA DNA -9 125 1 2310 104 0 3 chr13 40391135 40391444 -79353454 + AluSg SINE Alu 1 308 -2 2114 123 3 0 chr13 40391504 40391796 -79353102 + AluSq SINE Alu 1 293 -20 317 300 0 0 chr13 40392253 40392333 -79352565 + L2 LINE L2 3234 3313 0 3507 137 28 28 chr13 40393237 40393841 -79351057 + MER6A DNA MER2_type 2 605 0 687 270 180 5 chr13 40393873 40394084 -79350814 + MIR SINE MIR 15 262 0 2355 93 3 0 chr13 40394823 40395123 -79349775 - AluSp SINE Alu -12 301 1 447 335 71 11 chr13 40395253 40395435 -79349463 - MIR SINE MIR -47 215 23 395 346 32 0 chr13 40395765 40395921 -79348977 + MIR SINE MIR 68 228 -34 393 314 10 0 chr13 40396381 40396483 -79348415 - L2 LINE L2 -1 3271 3169 2221 124 3 0 chr13 40396565 40396863 -79348035 + AluSx SINE Alu 1 299 -13 1956 111 7 4 chr13 40397759 40398065 -79346833 + AluSx SINE Alu 1 307 0 514 254 92 40 chr13 40399071 40399244 -79345654 - MIR SINE MIR -50 212 31 223 339 54 18 chr13 40399477 40399589 -79345309 - L2 LINE L2 0 3313 3198 611 184 0 14 chr13 40399903 40400050 -79344848 + L1P LINE L1 4753 4897 -1249 687 187 0 0 chr13 40400051 40400185 -79344713 - L1 LINE L1 -1455 4691 4558 1422 163 33 33 chr13 40400318 40400619 -79344279 - MER58B DNA MER1_type 0 341 41 678 261 85 15 chr13 40400779 40401051 -79343847 + MER102b DNA MER1_type 35 325 -16 424 291 166 10 chr13 40401155 40401354 -79343544 + MIR SINE MIR 19 248 -14 408 304 75 50 chr13 40401432 40401593 -79343305 - MIR3 SINE MIR -28 180 16 3722 203 5 5 chr13 40402077 40402910 -79341988 + L1P LINE L1 4304 5136 -1010 1429 189 71 0 chr13 40402908 40403246 -79341652 + L1MC4 LINE L1 7062 7423 -619 * 1473 166 14 38 chr13 40403247 40403536 -79341362 - MER1B DNA MER1_type -1 338 57 1845 186 72 23 chr13 40403547 40403948 -79340950 + L1MC4 LINE L1 7415 7844 -198 2190 114 7 0 chr13 40403948 40404246 -79340652 - AluSx SINE Alu -12 300 1 1845 186 72 23 chr13 40404246 40404318 -79340580 + L1MC4 LINE L1 7844 7911 -131 306 50 0 0 chr13 40404339 40404379 -79340519 + (GA)n Simple_repeat Simple_repeat 2 41 0 216 0 0 0 chr13 40405704 40405728 -79339170 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 1065 230 45 63 chr13 40405752 40406230 -79338668 + MLT1K LTR MaLR 63 558 -30 2743 23 0 0 chr13 40406337 40406646 -79338252 - AluYb8 SINE Alu -9 309 1 429 252 23 0 chr13 40406842 40406973 -79337925 + MER103 DNA DNA 13 146 -20 548 258 8 0 chr13 40407035 40407163 -79337735 + FLAM_A SINE Alu 1 129 -13 500 234 30 96 chr13 40408144 40408341 -79336557 + MIR SINE MIR 79 262 0 2082 146 0 0 chr13 40408971 40409273 -79335625 - AluSx SINE Alu -10 302 1 2203 94 35 0 chr13 40409733 40410021 -79334877 - AluSc SINE Alu -11 298 1 521 203 161 8 chr13 40410275 40410393 -79334505 + MIR SINE MIR 4 139 -123 3164 236 36 29 chr13 40410713 40411543 -79333355 - L1M4 LINE L1 -1198 4948 4108 581 23 23 35 chr13 40411543 40411630 -79333268 - L1PA4 LINE L1 0 6155 6070 3164 236 36 29 chr13 40411630 40411786 -79333112 - L1M4 LINE L1 -2038 4108 3955 306 342 33 0 chr13 40411906 40412026 -79332872 - L1ME LINE L1 -5941 129 6 920 243 71 41 chr13 40412239 40412606 -79332292 - HAL1 LINE L1 0 2507 2130 254 139 0 23 chr13 40412606 40412649 -79332249 + Tigger5 DNA MER2_type 4 45 -2278 254 128 0 43 chr13 40412686 40412733 -79332165 - Tigger5 DNA MER2_type -2278 45 1 293 68 0 23 chr13 40412834 40412878 -79332020 + Tigger5 DNA MER2_type 2123 2165 -158 1049 190 119 36 chr13 40412903 40413240 -79331658 - HAL1 LINE L1 -754 1753 1389 369 0 0 0 chr13 40413241 40413282 -79331616 + (TG)n Simple_repeat Simple_repeat 2 42 0 368 342 31 12 chr13 40413426 40413587 -79331311 - HAL1 LINE L1 -2065 442 279 431 252 214 15 chr13 40414098 40414304 -79330594 - MIR SINE MIR -14 248 2 239 129 29 43 chr13 40414385 40414455 -79330443 + (TAAG)n Simple_repeat Simple_repeat 1 69 0 299 346 0 0 chr13 40415341 40415422 -79329476 - MER63 DNA MER1_type -1 1060 980 283 135 77 0 chr13 40415425 40415477 -79329421 - MER63 DNA MER1_type -312 748 693 907 141 14 0 chr13 40417844 40417986 -79326912 - AluSg/x SINE Alu -33 279 136 190 316 53 40 chr13 40418280 40418356 -79326542 - L2 LINE L2 -12 3260 3184 23 0 0 0 chr13 40418772 40418795 -79326103 + AT_rich Low_complexity Low_complexity 1 23 0 10433 32 0 1 chr13 40420265 40421531 -79323367 - L1P LINE L1 -1997 4149 2885 8431 30 0 3 chr13 40421531 40423306 -79321592 + L1PA3 LINE L1 4382 6153 -2 2319 171 11 11 chr13 40423318 40423775 -79321123 + L1P LINE L1 4481 4937 -1209 1444 157 45 114 chr13 40424044 40424446 -79320452 + MLT1A2 LTR MaLR 1 374 0 180 111 0 0 chr13 40424821 40424848 -79320050 + (TATG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr13 40425532 40425555 -79319343 + AT_rich Low_complexity Low_complexity 1 23 0 1385 138 47 7 chr13 40426029 40426304 -79318594 + MER33 DNA MER1_type 37 322 -2 419 252 70 14 chr13 40428156 40428299 -79316599 + MIR SINE MIR 2 152 -110 238 230 8 143 chr13 40428299 40428425 -79316473 + MIR SINE MIR 127 235 -27 572 143 19 38 chr13 40428496 40428601 -79316297 + Ricksha DNA DNA 1 103 -3143 2131 159 28 3 chr13 40428613 40428965 -79315933 + Ricksha DNA DNA 240 600 -2646 1765 140 23 44 chr13 40428957 40429150 -79315748 + Ricksha DNA DNA 2882 3021 -239 * 2243 107 0 0 chr13 40429150 40429458 -79315440 - AluSq SINE Alu -5 308 1 1765 140 23 44 chr13 40429458 40429681 -79315217 + Ricksha DNA DNA 3021 3247 -13 268 136 23 0 chr13 40429766 40429810 -79315088 + Ricksha DNA DNA 2563 2607 -247 381 303 92 50 chr13 40429899 40430117 -79314781 - MIR SINE MIR -32 230 4 309 51 0 0 chr13 40430297 40430336 -79314562 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 288 374 96 0 chr13 40430504 40430619 -79314279 - L2 LINE L2 -4 3268 3143 1668 243 131 20 chr13 40432293 40432956 -79311942 - HAL1 LINE L1 -4 2503 1767 231 298 0 0 chr13 40432956 40433013 -79311885 - MIR SINE MIR -11 251 195 265 273 129 7 chr13 40433049 40433203 -79311695 + L1P5 LINE L1 5290 5467 -684 688 268 118 21 chr13 40433253 40433448 -79311450 + L1ME3A LINE L1 5626 5859 -311 1986 195 10 45 chr13 40433448 40433931 -79310967 + MER31B LTR ERV1 1 466 0 688 268 118 21 chr13 40433931 40434022 -79310876 + L1ME3A LINE L1 5859 5940 -230 257 316 68 34 chr13 40434301 40434418 -79310480 - L2 LINE L2 -190 3082 2962 1619 179 10 67 chr13 40434571 40434973 -79309925 + L1ME1 LINE L1 4679 5057 -1089 243 243 57 0 chr13 40434985 40435055 -79309843 + L1ME1 LINE L1 5210 5283 -863 1378 172 9 4 chr13 40435056 40435288 -79309610 + AluJb SINE Alu 67 299 -13 3180 223 77 26 chr13 40435289 40436119 -79308779 + L1ME1 LINE L1 5275 6146 -20 309 294 46 46 chr13 40436143 40436296 -79308602 - L2 LINE L2 -605 2709 2557 226 384 34 20 chr13 40436842 40436988 -79307910 + MIR3 SINE MIR 2 149 -59 1190 167 0 0 chr13 40437809 40437989 -79306909 + AluJb SINE Alu 1 180 -132 460 328 69 10 chr13 40438340 40438715 -79306183 - L1 LINE L1 -1058 5088 4674 1037 195 0 19 chr13 40438733 40438948 -79305950 - L1ME LINE L1 -642 5524 5314 656 238 72 6 chr13 40438952 40439133 -79305765 - L1MC4 LINE L1 -1374 6668 6476 926 191 10 10 chr13 40439455 40439664 -79305234 - L1ME LINE L1 -816 5330 5122 367 276 16 42 chr13 40439672 40439828 -79305070 - L1ME LINE L1 -2008 4138 3987 285 310 185 33 chr13 40439958 40440142 -79304756 + MIR SINE MIR 14 225 -37 284 347 0 0 chr13 40440203 40440275 -79304623 - L2 LINE L2 -2 3311 3240 1852 113 14 0 chr13 40441153 40441428 -79303470 + L1PA15 LINE L1 5884 6162 -3 240 294 39 0 chr13 40443920 40444022 -79300876 + L1ME LINE L1 5757 5862 -259 25 31 0 0 chr13 40446988 40447020 -79297878 + AT_rich Low_complexity Low_complexity 1 32 0 1893 143 7 0 chr13 40449169 40449442 -79295456 - MER1B DNA MER1_type -64 275 1 822 275 226 25 chr13 40449500 40449907 -79294991 + L2 LINE L2 2823 3311 -2 317 316 30 77 chr13 40450195 40450429 -79294469 + L2 LINE L2 2980 3202 -111 387 183 0 0 chr13 40450429 40450489 -79294409 + MER20 DNA MER1_type 160 219 0 511 300 116 38 chr13 40451132 40451452 -79293446 - L3b LINE CR1 -116 1467 1123 490 224 146 18 chr13 40451501 40451666 -79293232 - MER5A DNA MER1_type 0 189 4 209 236 28 28 chr13 40451878 40451984 -79292914 + (TA)n Simple_repeat Simple_repeat 1 106 0 264 252 45 81 chr13 40453959 40454070 -79290828 + LTR33A LTR ERVL 56 162 -361 1167 188 14 14 chr13 40454162 40454380 -79290518 + MER58A DNA MER1_type 2 219 -5 231 146 0 24 chr13 40454524 40454565 -79290333 + LTR33A LTR ERVL 458 497 -26 1991 96 68 4 chr13 40455415 40455695 -79289203 - AluSp SINE Alu -13 300 3 253 252 108 0 chr13 40455868 40455979 -79288919 - L1ME3A LINE L1 -87 6083 5961 1852 147 7 24 chr13 40456101 40456394 -79288504 - AluJo SINE Alu -12 300 13 21 36 0 0 chr13 40456577 40456605 -79288293 + AT_rich Low_complexity Low_complexity 1 28 0 270 327 48 58 chr13 40457202 40457306 -79287592 + MIR SINE MIR 28 130 -78 267 298 107 0 chr13 40457322 40457406 -79287492 + MIR3 SINE MIR 105 197 -11 232 347 92 25 chr13 40459318 40459514 -79285384 + L2 LINE L2 2851 3059 -213 2376 74 0 10 chr13 40459713 40460011 -79284887 + AluSp SINE Alu 1 295 -18 375 393 11 6 chr13 40460959 40461137 -79283761 + L2 LINE L2 2565 2743 -571 1144 149 6 0 chr13 40461409 40461583 -79283315 - FAM SINE Alu 0 175 1 192 385 46 9 chr13 40461608 40461717 -79283181 + L2 LINE L2 3142 3254 -18 282 323 72 36 chr13 40462879 40463046 -79281852 - L3 LINE CR1 -6 1571 1399 2536 60 0 0 chr13 40463230 40463529 -79281369 + AluY SINE Alu 1 299 -12 2410 125 8 5 chr13 40463636 40464035 -79280863 + L1MA4A LINE L1 5900 6299 -4 237 341 89 16 chr13 40464281 40464404 -79280494 + MIR3 SINE MIR 10 141 -67 266 272 123 0 chr13 40464482 40464563 -79280335 + MIR SINE MIR 172 262 0 22 0 0 0 chr13 40465041 40465063 -79279835 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 40465498 40465520 -79279378 + AT_rich Low_complexity Low_complexity 1 22 0 617 275 60 0 chr13 40466667 40466849 -79278049 + MIR SINE MIR 60 252 -10 254 256 23 12 chr13 40466851 40466937 -79277961 + (TTA)n Simple_repeat Simple_repeat 3 89 0 47 24 4 0 chr13 40468878 40468976 -79275922 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr13 40469724 40469754 -79275144 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr13 40470375 40470418 -79274480 + AT_rich Low_complexity Low_complexity 1 43 0 1551 157 16 36 chr13 40472044 40472349 -79272549 - L1MA7 LINE L1 -3 6288 5990 679 265 107 55 chr13 40474332 40474656 -79270242 - L2 LINE L2 -253 3060 2723 1281 209 90 47 chr13 40474704 40475106 -79269792 + LTR40b LTR ERVL 44 462 0 3899 248 81 120 chr13 40475108 40477289 -79267609 - L2 LINE L2 -656 2658 563 196 347 32 11 chr13 40477295 40477390 -79267508 - L2 LINE L2 -3059 255 159 611 237 102 57 chr13 40477682 40477997 -79266901 - L1MC4 LINE L1 -1984 5824 5613 331 320 44 61 chr13 40478240 40478350 -79266548 + MIR SINE MIR 3 110 -152 2208 127 0 0 chr13 40478350 40478657 -79266241 + AluSx SINE Alu 1 307 -5 331 320 44 61 chr13 40478657 40478727 -79266171 + MIR SINE MIR 110 180 -82 198 222 0 0 chr13 40478776 40478830 -79266068 + (TTA)n Simple_repeat Simple_repeat 1 54 0 405 0 0 0 chr13 40481436 40481481 -79263417 + (CA)n Simple_repeat Simple_repeat 2 46 0 1012 47 0 8 chr13 40482532 40482661 -79262237 + L1PA3 LINE L1 6026 6153 -2 198 91 0 0 chr13 40482667 40482700 -79262198 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 2101 127 33 33 chr13 40483263 40483626 -79261272 + THE1B LTR MaLR 1 363 -1 204 125 62 0 chr13 40484123 40484171 -79260727 + (TA)n Simple_repeat Simple_repeat 1 51 0 510 302 29 71 chr13 40485202 40485510 -79259388 + L2 LINE L2 2977 3271 -1 2139 113 0 0 chr13 40485695 40485987 -79258911 + AluSg SINE Alu 1 292 -18 1819 135 71 17 chr13 40488471 40488767 -79256131 - AluSx SINE Alu 0 312 1 746 190 47 65 chr13 40489210 40489442 -79255456 + L1MA7 LINE L1 6021 6248 -43 310 336 82 9 chr13 40490690 40490800 -79254098 - L2 LINE L2 -2 3311 3194 2464 81 0 3 chr13 40491480 40491790 -79253108 - AluY SINE Alu 0 311 3 577 264 56 76 chr13 40492603 40492906 -79251992 + L2 LINE L2 3017 3313 0 185 184 0 0 chr13 40493065 40493103 -79251795 + L2 LINE L2 3015 3052 -261 188 366 0 0 chr13 40493240 40493311 -79251587 + L2 LINE L2 3201 3271 -1 380 402 94 18 chr13 40493921 40494145 -79250753 - L2 LINE L2 0 3272 3032 946 228 123 19 chr13 40494146 40494505 -79250393 - Charlie7 DNA MER1_type -123 2489 2094 231 326 174 0 chr13 40494809 40494947 -79249951 - L2 LINE L2 -559 2755 2594 550 184 48 68 chr13 40495368 40495515 -79249383 + L2 LINE L2 3159 3302 -11 1382 230 53 65 chr13 40495519 40495953 -79248945 + LTR16A1 LTR ERVL 29 457 0 239 0 0 31 chr13 40496219 40496251 -79248647 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2121 87 7 14 chr13 40496456 40496776 -79248122 - AluY SINE Alu 0 318 1 2155 68 0 0 chr13 40496778 40497057 -79247841 - L1PA6 LINE L1 -1 6153 5875 2958 53 0 0 chr13 40497058 40497480 -79247418 + L1P2 LINE L1 5205 5626 -528 218 302 151 9 chr13 40498180 40498286 -79246612 + L3 LINE CR1 586 706 -871 13601 38 1 1 chr13 40498619 40500275 -79244623 - L1PA4 LINE L1 -1377 4769 3114 7119 36 7 22 chr13 40500275 40501674 -79243224 + L1PA4 LINE L1 4770 6155 0 2241 164 6 81 chr13 40501674 40501790 -79243108 + Tigger1 DNA MER2_type 1471 1594 -824 2251 108 0 0 chr13 40501790 40502125 -79242773 + AluSc SINE Alu 1 309 0 213 39 0 0 chr13 40502125 40502151 -79242747 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 2241 164 6 81 chr13 40502151 40502527 -79242371 + Tigger1 DNA MER2_type 1592 1927 -491 811 261 115 0 chr13 40502546 40502772 -79242126 + MIR SINE MIR 1 252 -10 22 35 0 0 chr13 40502772 40502801 -79242097 + AT_rich Low_complexity Low_complexity 1 29 0 180 301 133 0 chr13 40502802 40502885 -79242013 + L3b LINE CR1 1116 1209 -374 19961 65 1 1 chr13 40503764 40507190 -79237708 + L1PA6 LINE L1 2722 6152 -2 1661 85 0 0 chr13 40507267 40507468 -79237430 + AluSq SINE Alu 6 206 -107 5795 96 5 17 chr13 40508730 40508751 -79236147 - L1MA3 LINE L1 0 6305 6285 1991 112 115 15 chr13 40508751 40509081 -79235817 + THE1B LTR MaLR 2 364 0 5795 96 5 17 chr13 40509081 40509922 -79234976 - L1MA3 LINE L1 -20 6285 5454 22 70 0 0 chr13 40510076 40510119 -79234779 + AT_rich Low_complexity Low_complexity 1 43 0 189 329 13 13 chr13 40510367 40510443 -79234455 - MIR3 SINE MIR -22 186 111 686 266 102 9 chr13 40510452 40510794 -79234104 + L1M4 LINE L1 3001 3374 -2772 26 0 0 0 chr13 40511175 40511201 -79233697 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr13 40511366 40511392 -79233506 + AT_rich Low_complexity Low_complexity 1 26 0 1501 156 4 0 chr13 40512055 40512299 -79232599 - L1PA16 LINE L1 -12 6154 5910 236 180 117 54 chr13 40512881 40512992 -79231906 - L1M4 LINE L1 -1703 4443 4326 307 200 9 118 chr13 40513003 40513113 -79231785 - L1MC4 LINE L1 -1331 6711 6614 1863 235 95 11 chr13 40513130 40513738 -79231160 - L1M4 LINE L1 -1807 4339 3681 929 261 100 22 chr13 40513729 40514178 -79230720 - L1MEc LINE L1 -4688 2434 1951 * 504 264 133 22 chr13 40514185 40514500 -79230398 - L1MEc LINE L1 -4890 1731 1306 1211 128 79 57 chr13 40516630 40516857 -79228041 + MER46A DNA MER2_type 3 234 -2 536 319 27 11 chr13 40516862 40517047 -79227851 - MIR SINE MIR -32 230 43 493 248 55 9 chr13 40517375 40517484 -79227414 + L2 LINE L2 3158 3271 -1 1528 181 38 0 chr13 40517596 40517716 -79227182 + AluJo SINE Alu 1 115 -197 230 0 33 0 chr13 40517716 40517746 -79227152 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1528 181 38 0 chr13 40517746 40517891 -79227007 + AluJo SINE Alu 115 276 -36 447 68 0 0 chr13 40517902 40517961 -79226937 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 21 0 0 0 chr13 40518216 40518237 -79226661 + AT_rich Low_complexity Low_complexity 1 21 0 334 250 0 22 chr13 40518880 40518972 -79225926 + CT-rich Low_complexity Low_complexity 3 92 0 617 330 121 42 chr13 40518977 40519850 -79225048 - L2 LINE L2 -8 3264 2325 22 35 0 0 chr13 40520184 40520213 -79224685 + AT_rich Low_complexity Low_complexity 1 29 0 207 301 0 27 chr13 40520925 40520998 -79223900 + GA-rich Low_complexity Low_complexity 2 72 0 223 317 40 40 chr13 40521982 40522083 -79222815 + MIR3 SINE MIR 105 205 -3 284 119 34 0 chr13 40522118 40522177 -79222721 + L1ME4a LINE L1 6061 6121 0 23 0 0 0 chr13 40522675 40522698 -79222200 + AT_rich Low_complexity Low_complexity 1 23 0 321 267 103 67 chr13 40523423 40523514 -79221384 + L1MC5 LINE L1 7505 7591 -370 1572 199 3 13 chr13 40523514 40523815 -79221083 - AluJb SINE Alu -12 300 3 321 267 103 67 chr13 40523815 40524082 -79220816 + L1MC5 LINE L1 7591 7876 -85 221 236 127 0 chr13 40524154 40524209 -79220689 + MIR SINE MIR 200 261 -1 445 318 115 5 chr13 40524265 40524457 -79220441 + MIR SINE MIR 20 232 -30 2328 57 23 3 chr13 40524776 40525077 -79219821 + AluY SINE Alu 1 307 -4 24 32 0 0 chr13 40525368 40525399 -79219499 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr13 40525512 40525533 -79219365 + (A)n Simple_repeat Simple_repeat 1 21 0 2180 116 0 0 chr13 40525740 40526033 -79218865 - AluSx SINE Alu -19 293 1 1894 171 0 10 chr13 40526181 40526491 -79218407 - AluJb SINE Alu -4 308 2 2349 79 3 0 chr13 40526497 40526800 -79218098 - AluSp SINE Alu -9 304 1 23 33 0 0 chr13 40527318 40527348 -79217550 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 40528434 40528462 -79216436 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr13 40528734 40528757 -79216141 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2032 127 0 10 chr13 40528761 40529053 -79215845 - AluSx SINE Alu -23 289 1 209 267 0 0 chr13 40529089 40529134 -79215764 - L2 LINE L2 -4 3309 3265 271 310 35 49 chr13 40529301 40529443 -79215455 - MIR3 SINE MIR 0 208 69 523 317 25 10 chr13 40531247 40531449 -79213449 - MIR SINE MIR -40 222 18 22 56 0 0 chr13 40531525 40531561 -79213337 + AT_rich Low_complexity Low_complexity 1 36 0 424 332 121 33 chr13 40531718 40532424 -79212474 - L2 LINE L2 -10 3262 2482 21 0 0 0 chr13 40532966 40532987 -79211911 + AT_rich Low_complexity Low_complexity 1 21 0 2278 74 0 13 chr13 40533443 40533755 -79211143 - AluY SINE Alu -3 308 1 21 0 0 0 chr13 40533765 40533786 -79211112 + AT_rich Low_complexity Low_complexity 1 21 0 237 212 15 15 chr13 40534443 40534509 -79210389 + (TA)n Simple_repeat Simple_repeat 2 67 0 710 196 0 0 chr13 40534512 40534624 -79210274 - FLAM_A SINE Alu -30 112 1 23 33 0 0 chr13 40534642 40534672 -79210226 + AT_rich Low_complexity Low_complexity 1 30 0 546 278 68 35 chr13 40534734 40534961 -79209937 - MIR SINE MIR -16 246 13 219 358 31 42 chr13 40535019 40535212 -79209686 - L2 LINE L2 -170 3102 2912 201 260 71 55 chr13 40535474 40535601 -79209297 - L2 LINE L2 -1317 1997 1869 329 319 184 20 chr13 40536170 40536778 -79208120 + L2 LINE L2 2174 2881 -433 491 368 93 33 chr13 40536867 40537316 -79207582 + L2 LINE L2 2498 2973 -341 338 317 48 10 chr13 40537712 40537816 -79207082 - L2 LINE L2 0 3272 3165 214 208 19 0 chr13 40538280 40538333 -79206565 + CT-rich Low_complexity Low_complexity 1 54 0 22 56 0 0 chr13 40538658 40538694 -79206204 + AT_rich Low_complexity Low_complexity 1 36 0 219 69 0 0 chr13 40538909 40538938 -79205960 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 275 194 37 0 chr13 40539091 40539199 -79205699 + (TA)n Simple_repeat Simple_repeat 1 112 0 2188 124 0 0 chr13 40539298 40539596 -79205302 + AluSg SINE Alu 1 298 -12 1650 164 11 4 chr13 40540323 40540591 -79204307 + AluJb SINE Alu 1 270 -42 189 0 0 0 chr13 40540599 40540620 -79204278 + (TC)n Simple_repeat Simple_repeat 2 22 0 260 109 0 0 chr13 40540642 40540688 -79204210 + LTR66 LTR ERVL 394 439 -171 192 303 56 22 chr13 40540744 40540833 -79204065 + MER5B DNA MER1_type 87 178 0 22 35 0 0 chr13 40540841 40540870 -79204028 + AT_rich Low_complexity Low_complexity 1 29 0 201 263 0 0 chr13 40541031 40541088 -79203810 + (TAA)n Simple_repeat Simple_repeat 2 58 0 255 296 169 17 chr13 40541089 40541261 -79203637 - MIR SINE MIR -1 261 64 280 240 47 54 chr13 40543042 40543171 -79201727 + MER103 DNA DNA 8 135 -31 270 0 0 0 chr13 40543550 40543580 -79201318 + (CA)n Simple_repeat Simple_repeat 2 31 0 759 284 111 19 chr13 40547236 40547817 -79197081 - L1P3 LINE L1 -312 5842 5202 517 296 74 7 chr13 40547954 40548251 -79196647 - L1M4 LINE L1 -1300 4846 4530 21 0 0 0 chr13 40548370 40548391 -79196507 + AT_rich Low_complexity Low_complexity 1 21 0 377 329 47 0 chr13 40548542 40548691 -79196207 - L1M4 LINE L1 -2036 4110 3955 2181 102 0 13 chr13 40549063 40549366 -79195532 + AluSc SINE Alu 1 299 -10 5793 135 12 3 chr13 40549379 40550299 -79194599 - L1P4 LINE L1 -1200 4946 4019 2259 153 40 1 chr13 40550292 40550784 -79194114 + L1P4 LINE L1 4947 5455 -713 * 641 200 0 0 chr13 40551522 40551637 -79193261 + FLAM_C SINE Alu 9 123 -20 446 0 19 0 chr13 40551652 40551706 -79193192 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 351 346 11 33 chr13 40552625 40552807 -79192091 + MER5B DNA MER1_type 1 178 0 280 157 0 0 chr13 40552957 40553008 -79191890 - L1MC4 LINE L1 -1340 6702 6652 5356 71 4 1 chr13 40553478 40554180 -79190718 - L1PA11 LINE L1 -8 6166 5463 233 167 0 56 chr13 40555287 40555359 -79189539 + T-rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr13 40555429 40555451 -79189447 + AT_rich Low_complexity Low_complexity 1 22 0 198 309 82 21 chr13 40555521 40555618 -79189280 + L3b LINE CR1 1299 1401 -182 241 275 175 17 chr13 40555975 40556095 -79188803 + MIR SINE MIR 3 141 -121 5381 193 37 26 chr13 40556144 40557565 -79187333 + L1M1 LINE L1 16 2171 -5394 2417 118 34 14 chr13 40557565 40557922 -79186976 - THE1B LTR MaLR 0 364 1 5381 193 37 26 chr13 40557922 40558027 -79186871 + L1M1 LINE L1 2171 2273 -5292 2163 249 20 15 chr13 40558128 40558786 -79186112 - L1P LINE L1 -2473 3673 3013 351 0 0 0 chr13 40560292 40560331 -79184567 + (TA)n Simple_repeat Simple_repeat 1 39 0 2681 32 3 0 chr13 40560337 40560647 -79184251 - AluY SINE Alu 0 311 1 597 289 79 21 chr13 40561038 40561228 -79183670 + MIR SINE MIR 61 261 -1 1793 167 7 3 chr13 40561381 40561668 -79183230 - AluJb SINE Alu -16 296 9 1798 67 20 20 chr13 40561675 40561929 -79182969 - L1PA7 LINE L1 -1 6153 5900 495 71 48 12 chr13 40561929 40562013 -79182885 + L1P LINE L1 4298 4384 -1762 390 240 20 0 chr13 40562113 40562213 -79182685 + MLT1D LTR MaLR 402 503 -2 362 236 69 48 chr13 40562573 40562724 -79182174 - MIR SINE MIR -6 256 100 198 267 59 59 chr13 40562757 40562892 -79182006 - L2 LINE L2 -1025 2289 2155 499 321 58 26 chr13 40564014 40564204 -79180694 - MIR SINE MIR -59 203 8 481 208 38 9 chr13 40564292 40564398 -79180500 + MER3 DNA MER1_type 1 109 -100 433 86 0 0 chr13 40564409 40564467 -79180431 - Alu SINE Alu -16 296 239 1884 138 33 0 chr13 40564568 40564870 -79180028 + AluSx SINE Alu 1 311 0 950 223 11 0 chr13 40565169 40565353 -79179545 + MER5A DNA MER1_type 4 189 0 1794 123 82 7 chr13 40567349 40567642 -79177256 - MSTA LTR MaLR -113 315 1 6978 156 19 16 chr13 40567652 40569905 -79174993 + L1MA3 LINE L1 4044 6302 -3 207 0 0 0 chr13 40569914 40569937 -79174961 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 554 88 0 25 chr13 40569939 40570019 -79174879 - MSTB1 LTR MaLR -53 379 302 378 212 168 62 chr13 40570811 40570990 -79173908 - HAL1b LINE L1 -201 1147 950 1009 266 22 33 chr13 40571066 40571434 -79173464 + L1ME1 LINE L1 5796 6159 -7 610 222 50 16 chr13 40572012 40572242 -79172656 + L1ME2 LINE L1 5796 6031 -144 22 0 0 0 chr13 40572364 40572386 -79172512 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr13 40572580 40572609 -79172289 + AT_rich Low_complexity Low_complexity 1 29 0 206 264 222 28 chr13 40573596 40573740 -79171158 - L2 LINE L2 -856 2458 2287 1543 168 57 20 chr13 40573799 40574096 -79170802 + AluJo SINE Alu 5 312 0 285 109 0 0 chr13 40574105 40574151 -79170747 + (GGGGA)n Simple_repeat Simple_repeat 5 50 0 239 250 0 69 chr13 40575602 40575718 -79169180 + HAL1 LINE L1 1156 1263 -1244 1591 185 13 22 chr13 40575836 40576150 -79168748 + AluJo SINE Alu 1 311 -1 250 271 9 28 chr13 40576155 40576262 -79168636 + HAL1 LINE L1 1912 2016 -491 959 256 30 53 chr13 40576374 40576847 -79168051 + HAL1 LINE L1 2040 2501 -6 751 235 58 86 chr13 40577752 40578181 -79166717 - L1MC4 LINE L1 0 8042 7626 4846 82 28 10 chr13 40578425 40578779 -79166119 + L1PB2 LINE L1 5428 5774 -377 444 37 0 0 chr13 40578779 40578833 -79166065 + (CA)n Simple_repeat Simple_repeat 2 55 0 4846 82 28 10 chr13 40578833 40579188 -79165710 + L1PB2 LINE L1 5774 6150 -1 2436 70 0 3 chr13 40579210 40579509 -79165389 + AluY SINE Alu 1 298 -13 22 0 0 0 chr13 40579556 40579578 -79165320 + AT_rich Low_complexity Low_complexity 1 22 0 308 289 18 44 chr13 40580407 40580521 -79164377 - MIR3 SINE MIR -25 183 73 313 339 63 25 chr13 40580523 40580685 -79164213 - MIR SINE MIR -65 143 26 25 0 0 0 chr13 40580992 40581017 -79163881 + AT_rich Low_complexity Low_complexity 1 25 0 7656 27 0 0 chr13 40581017 40581975 -79162923 - L1PA4 LINE L1 -1 6154 5199 344 372 51 5 chr13 40582858 40583073 -79161825 - L2 LINE L2 -244 3028 2804 425 271 157 7 chr13 40583075 40583215 -79161683 + MER5B DNA MER1_type 1 161 -17 425 316 41 18 chr13 40583203 40583374 -79161524 - L2 LINE L2 -487 2827 2653 2025 136 35 32 chr13 40583891 40584265 -79160633 + THE1C LTR MaLR 1 375 0 2293 114 0 0 chr13 40585110 40585418 -79159480 + AluSg SINE Alu 1 308 -2 1910 214 153 28 chr13 40585852 40586507 -79158391 + L1M3e LINE L1 1431 2172 -4865 3688 158 31 52 chr13 40586515 40586912 -79157986 - L1MA9 LINE L1 -131 6169 5765 2542 103 11 0 chr13 40586912 40587263 -79157635 + THE1A LTR MaLR 1 355 0 3688 158 31 52 chr13 40587263 40588546 -79156352 - L1MA9 LINE L1 -535 5765 4558 1573 142 8 4 chr13 40588534 40588801 -79156097 - L1MA9 LINE L1 -1888 4258 3991 * 2130 199 65 7 chr13 40588799 40589356 -79155542 - L1MA9 LINE L1 -2414 3732 3144 1489 223 87 118 chr13 40589454 40590217 -79154681 + HsTC2a DNA Tc2 6 744 0 428 98 39 0 chr13 40590807 40590909 -79153989 + (TA)n Simple_repeat Simple_repeat 2 107 0 592 237 43 38 chr13 40590958 40591169 -79153729 + L1MB4 LINE L1 5778 5989 -191 * 1454 189 122 4 chr13 40590989 40591327 -79153571 + L1ME1 LINE L1 5800 6332 -2 824 211 0 7 chr13 40591349 40591501 -79153397 + MER58B DNA MER1_type 188 338 -3 1740 186 0 0 chr13 40591557 40591832 -79153066 + AluSx SINE Alu 1 275 -37 270 0 0 0 chr13 40591837 40591867 -79153031 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1898 165 0 16 chr13 40592042 40592358 -79152540 + AluJb SINE Alu 1 311 -1 2072 173 143 30 chr13 40593255 40593722 -79151176 + MLT2B1 LTR ERVL 1 520 0 2197 113 0 19 chr13 40593827 40594138 -79150760 + AluSx SINE Alu 1 305 -7 709 191 11 85 chr13 40594435 40594624 -79150274 + FRAM SINE Alu 1 40 0 29 0 0 0 chr13 40596481 40596510 -79148388 + AT_rich Low_complexity Low_complexity 1 29 0 903 104 0 0 chr13 40596601 40596726 -79148172 + AluSg/x SINE Alu 170 294 -18 272 123 9 132 chr13 40596727 40596839 -79148059 + L1MB4 LINE L1 5236 5334 -815 * 5686 191 39 7 chr13 40596838 40598480 -79146418 + L1PA16 LINE L1 4019 5710 -456 2900 78 20 8 chr13 40598480 40598875 -79146023 + MLT2A1 LTR ERVL 1 400 -44 386 78 0 16 chr13 40598876 40598940 -79145958 + (TG)n Simple_repeat Simple_repeat 2 64 0 303 59 0 4 chr13 40599109 40599155 -79145743 + MLT2A2 LTR ERVL 400 453 0 2272 155 59 11 chr13 40599155 40599593 -79145305 + L1PA16 LINE L1 5706 6164 -2 4610 150 22 29 chr13 40599607 40600420 -79144478 + L1MB4 LINE L1 5322 6130 -50 1451 105 5 14 chr13 40600420 40600629 -79144269 + AluSq SINE Alu 97 303 -10 4610 150 22 29 chr13 40600629 40600680 -79144218 + L1MB4 LINE L1 6130 6180 0 1393 206 3 0 chr13 40600805 40601115 -79143783 - L1MA4 LINE L1 -11 6289 5979 2199 105 3 7 chr13 40601685 40601979 -79142919 + AluSx SINE Alu 1 293 -19 357 82 0 0 chr13 40601995 40602044 -79142854 + (TG)n Simple_repeat Simple_repeat 2 50 0 199 260 71 55 chr13 40602376 40602503 -79142395 + L2 LINE L2 1869 1997 -1317 233 361 26 41 chr13 40602765 40602959 -79141939 + L2 LINE L2 2912 3102 -170 591 260 82 42 chr13 40603017 40603243 -79141655 + MIR SINE MIR 13 246 -16 23 33 0 0 chr13 40603305 40603335 -79141563 + AT_rich Low_complexity Low_complexity 1 30 0 721 196 0 0 chr13 40603353 40603465 -79141433 + FLAM_A SINE Alu 1 112 -30 237 212 15 15 chr13 40603468 40603534 -79141364 + (TA)n Simple_repeat Simple_repeat 2 67 0 21 0 0 0 chr13 40604191 40604212 -79140686 + AT_rich Low_complexity Low_complexity 1 21 0 2313 76 0 13 chr13 40604222 40604537 -79140361 + AluY SINE Alu 1 311 0 187 242 65 32 chr13 40604894 40604956 -79139942 + L2 LINE L2 3246 3309 -4 2261 101 10 3 chr13 40604973 40605280 -79139618 + AluSx SINE Alu 3 311 -1 2267 98 10 0 chr13 40605976 40606281 -79138617 + AluSx SINE Alu 1 308 -4 496 223 127 0 chr13 40606609 40606775 -79138123 + L2 LINE L2 2386 2572 -742 8446 30 0 0 chr13 40606921 40608698 -79136200 - L1PA3 LINE L1 0 6155 4382 12589 28 0 1 chr13 40608692 40610200 -79134698 + L1PA3 LINE L1 2879 4385 -1761 23 33 0 0 chr13 40610241 40610271 -79134627 + AT_rich Low_complexity Low_complexity 1 30 0 360 323 24 24 chr13 40610588 40610715 -79134183 + L2 LINE L2 3186 3312 -1 181 250 42 0 chr13 40610793 40610841 -79134057 - L2 LINE L2 -528 2786 2737 212 357 49 27 chr13 40610990 40611253 -79133645 + L2 LINE L2 1657 1925 -1389 2807 254 102 8 chr13 40611256 40612298 -79132600 + L2 LINE L2 2039 3272 -41 584 361 95 22 chr13 40612350 40612885 -79132013 + L2 LINE L2 1931 2504 -810 185 339 35 58 chr13 40613035 40613206 -79131692 + L2 LINE L2 3146 3312 -1 258 164 0 0 chr13 40614925 40614980 -79129918 + CT-rich Low_complexity Low_complexity 2 56 0 378 61 0 0 chr13 40614987 40615036 -79129862 + (CA)n Simple_repeat Simple_repeat 1 49 0 22 35 0 0 chr13 40615202 40615231 -79129667 + AT_rich Low_complexity Low_complexity 1 29 0 4039 226 113 58 chr13 40615849 40617006 -79127892 - L1MC4 LINE L1 -64 7978 6724 5937 89 29 73 chr13 40617006 40618343 -79126555 - SVA Other Other -518 1073 7 4039 226 113 58 chr13 40618343 40618624 -79126274 - L1MC4 LINE L1 -1318 6724 6460 207 242 15 38 chr13 40618743 40618875 -79126023 + GA-rich Low_complexity Low_complexity 3 131 0 294 336 86 51 chr13 40619143 40619515 -79125383 + L2 LINE L2 2150 2534 -780 713 224 99 48 chr13 40619530 40619656 -79125242 + L1MC4 LINE L1 7713 7831 -211 2578 97 22 8 chr13 40619656 40620026 -79124872 + THE1C LTR MaLR 1 375 0 713 224 99 48 chr13 40620026 40620212 -79124686 + L1MC4 LINE L1 7831 8041 -1 474 18 0 0 chr13 40620380 40620435 -79124463 + (CATA)n Simple_repeat Simple_repeat 4 58 0 280 347 25 30 chr13 40620922 40621121 -79123777 + LTR16C LTR ERVL 73 270 -221 26 30 0 0 chr13 40621542 40621575 -79123323 + AT_rich Low_complexity Low_complexity 1 33 0 467 316 120 14 chr13 40623299 40623465 -79121433 - MIR SINE MIR -3 259 72 213 358 78 26 chr13 40623465 40623658 -79121240 + MIR SINE MIR 1 203 -59 24 0 0 0 chr13 40624309 40624333 -79120565 + AT_rich Low_complexity Low_complexity 1 24 0 2260 112 0 0 chr13 40624882 40625178 -79119720 - AluSx SINE Alu -16 296 1 605 176 66 44 chr13 40626089 40626225 -79118673 - L2 LINE L2 0 3313 3175 * 691 275 42 17 chr13 40626208 40626444 -79118454 - L2 LINE L2 -492 2822 2581 276 358 45 8 chr13 40626475 40626609 -79118289 + L2 LINE L2 3133 3271 -1 255 320 0 13 chr13 40626609 40626724 -79118174 + GA-rich Low_complexity Low_complexity 1 113 0 611 304 23 6 chr13 40627188 40627359 -79117539 + MIR3 SINE MIR 30 203 -5 200 351 138 22 chr13 40627969 40628331 -79116567 + L2 LINE L2 2087 2490 -824 23 0 0 0 chr13 40628955 40628978 -79115920 + AT_rich Low_complexity Low_complexity 1 23 0 2019 118 0 0 chr13 40629103 40629374 -79115524 + AluSg SINE Alu 1 271 -39 1794 190 17 27 chr13 40630021 40630432 -79114466 + L1MC4a LINE L1 7064 7470 -338 231 257 204 9 chr13 40630688 40630801 -79114097 - MIR SINE MIR -50 212 78 189 121 0 0 chr13 40631326 40631359 -79113539 + (T)n Simple_repeat Simple_repeat 1 33 0 618 282 97 35 chr13 40632135 40632628 -79112270 + L1ME4a LINE L1 5360 5883 -238 1892 148 53 6 chr13 40632681 40633039 -79111859 + L1M2 LINE L1 5256 5630 -670 1284 91 59 0 chr13 40633068 40633254 -79111644 - LTR12 LTR ERV1 -133 581 385 351 226 11 14 chr13 40633254 40633361 -79111537 - LTR30 LTR ERV1 -94 620 377 4094 148 80 77 chr13 40633361 40634508 -79110390 - pTR5 LTR ERV1 -413 2025 741 25 31 0 0 chr13 40634592 40634624 -79110274 + AT_rich Low_complexity Low_complexity 1 32 0 276 323 73 16 chr13 40635464 40635588 -79109310 + L3b LINE CR1 1259 1389 -194 246 366 45 18 chr13 40635884 40635996 -79108902 + MIR SINE MIR 31 145 -63 263 261 143 25 chr13 40636262 40636381 -79108517 + MIR SINE MIR 64 196 -66 214 143 0 48 chr13 40636439 40636471 -79108427 + (CAT)n Simple_repeat Simple_repeat 2 33 -8 863 223 6 6 chr13 40636471 40636637 -79108261 - FRAM SINE Alu 0 166 1 214 143 0 48 chr13 40636637 40636646 -79108252 + (CAT)n Simple_repeat Simple_repeat 33 41 0 460 314 144 16 chr13 40636661 40636855 -79108043 + MIR SINE MIR 3 221 -41 2065 128 10 3 chr13 40636947 40637252 -79107646 + AluSx SINE Alu 1 307 -5 315 146 0 0 chr13 40637252 40637307 -79107591 + (TA)n Simple_repeat Simple_repeat 1 55 0 460 240 45 83 chr13 40637455 40637743 -79107155 + L1ME4a LINE L1 5710 5986 -135 393 238 139 16 chr13 40637839 40637961 -79106937 + L2 LINE L2 3173 3309 -4 272 328 85 17 chr13 40639008 40639185 -79105713 - L2 LINE L2 -420 2894 2706 24 53 0 0 chr13 40639424 40639462 -79105436 + AT_rich Low_complexity Low_complexity 1 38 0 30 27 0 0 chr13 40639673 40639710 -79105188 + AT_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr13 40640328 40640372 -79104526 + AT_rich Low_complexity Low_complexity 1 44 0 795 103 0 0 chr13 40640479 40640586 -79104312 + U6 snRNA snRNA 1 107 0 27 96 0 0 chr13 40640789 40640872 -79104026 + AT_rich Low_complexity Low_complexity 1 83 0 415 258 66 91 chr13 40640971 40641335 -79103563 - L1MC4 LINE L1 -425 7617 7263 420 203 129 18 chr13 40641422 40641582 -79103316 - L1MC4a LINE L1 -527 7281 7146 800 295 88 47 chr13 40641738 40642395 -79102503 - L1MC4a LINE L1 -1814 5994 5311 2231 113 0 19 chr13 40643545 40643854 -79101044 + AluSx SINE Alu 1 303 -9 211 198 0 47 chr13 40643899 40643985 -79100913 + GA-rich Low_complexity Low_complexity 6 87 0 1962 139 7 23 chr13 40644416 40644719 -79100179 - AluSx SINE Alu -12 300 3 1977 116 31 3 chr13 40645673 40645966 -79098932 + AluSg SINE Alu 1 301 -9 2345 107 0 0 chr13 40646415 40646723 -79098175 - AluSx SINE Alu -2 310 3 324 302 23 12 chr13 40646839 40646925 -79097973 + MIR SINE MIR 50 136 -126 253 206 22 0 chr13 40647604 40647696 -79097202 + (TA)n Simple_repeat Simple_repeat 2 95 0 313 270 177 11 chr13 40648273 40648526 -79096372 + L1ME LINE L1 5618 5922 -242 658 209 71 67 chr13 40649240 40649321 -79095577 + MER106A DNA MER1_type 26 105 -131 1428 101 206 13 chr13 40649321 40649559 -79095339 + AluSg1 SINE Alu 1 284 -25 658 209 71 67 chr13 40649559 40649687 -79095211 + MER106A DNA MER1_type 105 236 0 250 188 0 139 chr13 40650698 40650799 -79094099 + MER20B DNA MER1_type 1 87 -696 932 206 121 0 chr13 40651354 40651553 -79093345 + MIR SINE MIR 19 241 -21 247 358 108 20 chr13 40651561 40651709 -79093189 - MIR SINE MIR -101 161 1 285 319 52 84 chr13 40652649 40652779 -79092119 + MIR SINE MIR 2 126 -136 332 78 0 78 chr13 40652779 40652843 -79092055 - L1PA8 LINE L1 -1 6171 6113 285 319 52 84 chr13 40652843 40652903 -79091995 + MIR SINE MIR 126 186 -76 203 244 154 39 chr13 40653451 40653529 -79091369 - L2 LINE L2 0 3313 3227 649 209 20 7 chr13 40654197 40654350 -79090548 + L1M4 LINE L1 2739 2893 -3253 7550 227 48 94 chr13 40654360 40655746 -79089152 + L1MA9 LINE L1 402 1851 -5715 17873 51 0 2 chr13 40655746 40658807 -79086091 + L1PA5 LINE L1 3087 6150 -4 7550 227 48 94 chr13 40658807 40659739 -79085159 + L1MA9 LINE L1 1851 2825 -4741 269 211 26 0 chr13 40659739 40659815 -79085083 + G-rich Low_complexity Low_complexity 5 82 0 7550 227 48 94 chr13 40659815 40660123 -79084775 + L1MA9 LINE L1 2825 2692 -4874 896 59 0 8 chr13 40660123 40660258 -79084640 - L1PA5 LINE L1 0 6154 6028 7550 227 48 94 chr13 40660258 40660931 -79083967 + L1MA9 LINE L1 2691 3394 -4172 3777 225 59 15 chr13 40662916 40664287 -79080611 + L1MA9 LINE L1 3344 4767 -2798 * 3838 165 53 70 chr13 40664284 40664513 -79080385 + L1MA9 LINE L1 5911 6142 -1589 2036 156 10 0 chr13 40664513 40664814 -79080084 - AluJo SINE Alu -8 304 1 3838 165 53 70 chr13 40664814 40665862 -79079036 + L1MA9 LINE L1 6142 7206 -525 1381 201 69 34 chr13 40665862 40666211 -79078687 + MER46B DNA MER2_type 1 236 0 3838 165 53 70 chr13 40666211 40666230 -79078668 + L1MA9 LINE L1 7206 7224 -507 2526 65 0 3 chr13 40666230 40666537 -79078361 + AluSc SINE Alu 1 306 -3 3838 165 53 70 chr13 40666537 40667065 -79077833 + L1MA9 LINE L1 7224 7694 -37 * 7367 218 55 33 chr13 40667060 40670293 -79074605 + L1MB7 LINE L1 2860 6184 0 24 67 0 0 chr13 40670940 40670985 -79073913 + AT_rich Low_complexity Low_complexity 1 45 0 497 327 54 40 chr13 40671232 40671786 -79073112 - L1MC/D LINE L1 -1985 5823 5262 1609 103 34 4 chr13 40671963 40672225 -79072673 + L1MA8 LINE L1 5989 6258 -33 921 146 46 48 chr13 40672225 40672516 -79072382 + MER7A DNA MER2_type 1 241 -105 3300 120 29 0 chr13 40672516 40673006 -79071892 - MER1A DNA MER1_type 0 529 26 551 177 26 35 chr13 40673011 40673124 -79071774 + MER7A DNA MER2_type 225 336 0 32 0 0 0 chr13 40673141 40673173 -79071725 + AT_rich Low_complexity Low_complexity 1 32 0 2125 111 7 13 chr13 40673240 40673538 -79071360 + AluSx SINE Alu 1 296 -16 2375 92 0 0 chr13 40673732 40674026 -79070872 + AluSg SINE Alu 1 294 -16 241 309 200 17 chr13 40675432 40675607 -79069291 + MIR3 SINE MIR 2 208 0 481 303 81 20 chr13 40677062 40677260 -79067638 - MIR SINE MIR 0 262 53 23 33 0 0 chr13 40677585 40677615 -79067283 + AT_rich Low_complexity Low_complexity 1 30 0 478 319 53 30 chr13 40677623 40677984 -79066914 + L1ME LINE L1 21 389 -6034 410 220 19 53 chr13 40678454 40678663 -79066235 + L1ME LINE L1 3920 4121 -2820 832 244 32 10 chr13 40678775 40679182 -79065716 + L1ME LINE L1 5812 6235 -722 2108 101 3 10 chr13 40679182 40679499 -79065399 + AluSx SINE Alu 1 315 0 542 218 30 0 chr13 40679539 40679672 -79065226 + L1MCc LINE L1 320 456 -6383 567 152 0 30 chr13 40679721 40679820 -79065078 - AluJ SINE Alu -5 307 212 811 112 0 64 chr13 40679836 40679961 -79064937 - AluJ SINE Alu -182 130 14 4611 227 75 29 chr13 40679988 40682013 -79062885 + L1MCc LINE L1 562 2808 -4314 2561 153 50 7 chr13 40682144 40682609 -79062289 + MER31A LTR ERV1 1 485 0 206 353 180 7 chr13 40682666 40682816 -79062082 - L2 LINE L2 -425 2889 2714 3326 163 58 47 chr13 40682835 40683014 -79061884 + L1MB7 LINE L1 5406 5582 -602 1880 141 20 10 chr13 40683014 40683320 -79061578 + AluSx SINE Alu 1 309 -3 3326 163 58 47 chr13 40683320 40683903 -79060995 + L1MB7 LINE L1 5582 6176 -8 1760 216 115 46 chr13 40683909 40684554 -79060344 + L1ME2 LINE L1 5428 6122 -42 3565 52 5 0 chr13 40684554 40684997 -79059901 + L1PA7 LINE L1 5710 6154 0 1760 216 115 46 chr13 40684997 40685022 -79059876 + L1ME2 LINE L1 6122 6144 -20 357 222 120 18 chr13 40685073 40685240 -79059658 + L1MC5 LINE L1 7724 7907 -54 2401 93 0 0 chr13 40685729 40686029 -79058869 - AluY SINE Alu -11 300 1 2366 110 0 0 chr13 40686029 40686330 -79058568 - AluSx SINE Alu -11 301 1 2328 103 0 0 chr13 40686496 40686797 -79058101 + AluSx SINE Alu 1 301 -11 239 212 424 0 chr13 40687111 40687210 -79057688 - MIR SINE MIR 0 262 122 735 204 44 7 chr13 40687473 40687610 -79057288 + MER5A DNA MER1_type 34 175 -14 797 211 12 0 chr13 40688151 40688317 -79056581 - LTR33 LTR ERVL -28 493 326 266 115 0 0 chr13 40688409 40688461 -79056437 + L1MCc LINE L1 3275 3326 -3615 378 177 52 0 chr13 40688588 40688684 -79056214 + L1MCc LINE L1 3389 3489 -3452 946 202 28 44 chr13 40688791 40688885 -79056013 + L1MCc LINE L1 3470 3564 -3377 2190 104 3 19 chr13 40688885 40689192 -79055706 + AluSq SINE Alu 1 302 -11 946 202 28 44 chr13 40689192 40689345 -79055553 + L1MCc LINE L1 3564 3713 -3228 242 294 20 39 chr13 40689345 40689447 -79055451 + MER117 DNA MER1_type 98 197 0 290 310 65 73 chr13 40689574 40689806 -79055092 + L2 LINE L2 2204 2433 -881 662 211 54 111 chr13 40689965 40690316 -79054582 + Charlie2 DNA MER1_type 2532 2862 0 216 292 167 0 chr13 40690357 40690429 -79054469 + L2 LINE L2 3187 3270 -2 717 322 31 6 chr13 40690716 40691036 -79053862 + MER57-int LTR ERV1 6816 7143 -394 1002 268 108 18 chr13 40691038 40691426 -79053472 + MER57B LTR ERV1 1 423 -11 1329 157 0 22 chr13 40691461 40691684 -79053214 - MER20 DNA MER1_type -1 218 1 2067 126 3 17 chr13 40692322 40692469 -79052429 + AluSx SINE Alu 3 150 -162 2515 111 6 6 chr13 40692469 40692831 -79052067 + THE1B LTR MaLR 3 364 0 2067 126 3 17 chr13 40692831 40692984 -79051914 + AluSx SINE Alu 150 299 -13 551 260 143 17 chr13 40694507 40694738 -79050160 - MIR SINE MIR 0 262 3 183 100 0 0 chr13 40694848 40694878 -79050020 + (A)n Simple_repeat Simple_repeat 1 30 0 2269 43 20 23 chr13 40694968 40695269 -79049629 - AluY SINE Alu -11 300 1 333 312 55 18 chr13 40695560 40695669 -79049229 + MIR3 SINE MIR 75 187 -21 297 309 81 7 chr13 40695965 40696101 -79048797 - MIR3 SINE MIR -34 174 29 227 264 0 0 chr13 40697628 40697681 -79047217 - MIR SINE MIR -53 209 157 423 230 170 7 chr13 40697715 40697850 -79047048 - MIR SINE MIR -18 244 88 1678 152 0 19 chr13 40698013 40698276 -79046622 - AluJo SINE Alu -16 296 39 209 339 17 0 chr13 40698280 40698339 -79046559 - L2 LINE L2 -16 3256 3197 213 328 68 68 chr13 40698447 40698682 -79046216 - L2 LINE L2 -224 3048 2814 2340 103 3 0 chr13 40699333 40699643 -79045255 + AluSx SINE Alu 1 311 -1 570 242 15 72 chr13 40699837 40700004 -79044894 - MER5A DNA MER1_type 0 189 22 2370 112 0 3 chr13 40700070 40700384 -79044514 + AluSp SINE Alu 1 313 0 1966 153 10 0 chr13 40700436 40700731 -79044167 - AluJb SINE Alu -14 298 1 357 284 148 7 chr13 40700836 40700991 -79043907 - L1MC/D LINE L1 -2376 5432 5256 734 277 62 22 chr13 40701098 40701224 -79043674 + MIR SINE MIR 20 160 -102 2204 100 10 3 chr13 40701224 40701523 -79043375 + AluSc SINE Alu 1 301 -8 734 277 62 22 chr13 40701523 40701620 -79043278 + MIR SINE MIR 160 252 -10 189 0 0 0 chr13 40702948 40702969 -79041929 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 21 0 0 0 chr13 40702969 40702990 -79041908 + AT_rich Low_complexity Low_complexity 1 21 0 2193 119 0 0 chr13 40702990 40703276 -79041622 - AluSx SINE Alu -26 286 1 205 276 52 17 chr13 40703625 40703683 -79041215 + L2 LINE L2 2942 3001 -312 382 263 113 30 chr13 40703733 40703866 -79041032 + L2 LINE L2 3166 3309 -4 23 54 0 0 chr13 40704045 40704082 -79040816 + AT_rich Low_complexity Low_complexity 1 37 0 1194 185 8 4 chr13 40704082 40704336 -79040562 - L1MB3 LINE L1 -7 6176 5922 1467 223 112 23 chr13 40704371 40704843 -79040055 - MLT2B1 LTR ERVL -6 514 1 2910 123 6 12 chr13 40704843 40705331 -79039567 - L1MB3 LINE L1 -255 5928 5444 323 258 15 0 chr13 40706227 40706293 -79038605 - L2 LINE L2 -21 3251 3185 705 267 133 65 chr13 40706487 40706899 -79037999 + MER21B LTR ERV1 98 537 -326 300 209 73 36 chr13 40706934 40707044 -79037854 + MER21B LTR ERV1 626 739 -124 200 349 0 0 chr13 40707176 40707242 -79037656 - MIR SINE MIR -113 149 84 38 39 0 0 chr13 40708005 40708057 -79036841 + AT_rich Low_complexity Low_complexity 1 52 0 263 189 113 47 chr13 40708145 40708251 -79036647 - MER20B DNA MER1_type -639 144 32 492 84 12 48 chr13 40708399 40708482 -79036416 - MADE1 DNA Mariner 0 80 1 1925 114 10 55 chr13 40709476 40709784 -79035114 - AluSc SINE Alu -15 294 1 2388 88 3 0 chr13 40710619 40710926 -79033972 + AluSc SINE Alu 2 309 0 572 246 205 8 chr13 40711102 40711370 -79033528 + L1ME1 LINE L1 5522 5842 -279 460 254 16 8 chr13 40711957 40712079 -79032819 - L2 LINE L2 -996 2318 2196 1136 181 10 20 chr13 40712096 40712300 -79032598 + MER20 DNA MER1_type 1 202 -17 496 159 103 111 chr13 40712541 40712667 -79032231 - FLAM_C SINE Alu -10 133 9 402 323 56 60 chr13 40712668 40713121 -79031777 + L2 LINE L2 2536 3271 -1 238 317 144 37 chr13 40713162 40713433 -79031465 - L2 LINE L2 -1144 2170 1871 1042 288 79 4 chr13 40713434 40713701 -79031197 - MLT2E LTR ERVL -306 322 36 1232 254 57 35 chr13 40713765 40714276 -79030622 - L1MEc LINE L1 -4564 1832 1311 596 214 23 88 chr13 40714412 40714627 -79030271 + L2 LINE L2 3113 3313 0 220 289 105 0 chr13 40714768 40714882 -79030016 - L2 LINE L2 -1503 1811 1686 408 318 76 33 chr13 40715067 40715397 -79029501 + ERVL LTR ERVL 5041 5384 -380 2144 126 0 0 chr13 40715436 40715737 -79029161 + AluSx SINE Alu 1 301 -11 719 286 143 34 chr13 40715830 40716242 -79028656 + LTR16A1 LTR ERVL 1 457 0 600 232 65 7 chr13 40716638 40716776 -79028122 + MER5A DNA MER1_type 7 152 -37 806 171 12 18 chr13 40716817 40716981 -79027917 + L1MB5 LINE L1 6012 6174 0 711 227 87 19 chr13 40716982 40717189 -79027709 + L1ME1 LINE L1 5941 6161 -5 191 256 0 0 chr13 40717220 40717263 -79027635 + MER5A DNA MER1_type 147 189 0 1487 215 106 81 chr13 40717273 40717831 -79027067 + Charlie7 DNA MER1_type 3 574 -2038 * 2247 229 53 14 chr13 40717829 40718414 -79026484 + Charlie7 DNA MER1_type 1765 2372 -240 299 334 145 22 chr13 40718443 40718754 -79026144 + L2 LINE L2 2150 2498 -816 243 325 160 15 chr13 40719289 40719495 -79025403 + L2 LINE L2 2153 2388 -926 303 67 40 40 chr13 40719624 40719699 -79025199 + (TA)n Simple_repeat Simple_repeat 2 76 0 185 296 220 31 chr13 40720442 40720601 -79024297 - L2 LINE L2 -572 2742 2554 282 326 8 31 chr13 40720670 40720799 -79024099 + GA-rich Low_complexity Low_complexity 5 130 0 325 324 75 68 chr13 40721962 40722401 -79022497 + LTR16A LTR ERVL 1 442 -8 528 82 118 12 chr13 40722441 40722526 -79022372 - AluS SINE Alu -218 95 2 22 0 0 0 chr13 40722623 40722645 -79022253 + AT_rich Low_complexity Low_complexity 1 22 0 2221 116 0 3 chr13 40723003 40723305 -79021593 - AluSx SINE Alu -11 301 1 625 293 82 77 chr13 40724055 40724081 -79020817 - L3 LINE CR1 -1 1576 1552 2133 117 13 0 chr13 40724081 40724379 -79020519 + AluSx SINE Alu 1 302 -10 625 293 82 77 chr13 40724379 40724779 -79020119 - L3 LINE CR1 -25 1552 1148 1699 190 26 21 chr13 40724841 40725153 -79019745 + L1MC4a LINE L1 5171 5486 -698 2322 80 10 3 chr13 40725153 40725453 -79019445 + AluSq SINE Alu 1 302 -11 1699 190 26 21 chr13 40725453 40725577 -79019321 + L1MC4a LINE L1 5486 5608 -576 272 306 135 40 chr13 40726428 40726549 -79018349 - MIR SINE MIR -14 248 140 1955 147 0 16 chr13 40726549 40726856 -79018042 - AluJb SINE Alu -10 302 1 272 306 135 40 chr13 40726856 40726956 -79017942 - MIR SINE MIR -122 140 6 2112 124 10 7 chr13 40727029 40727336 -79017562 + AluSx SINE Alu 1 308 -4 1754 131 11 11 chr13 40727336 40727601 -79017297 - L1MB4 LINE L1 -20 6160 5893 437 294 113 32 chr13 40727862 40728083 -79016815 - MIR SINE MIR -10 252 14 749 205 0 0 chr13 40729649 40729771 -79015127 + FRAM SINE Alu 1 122 -54 839 204 14 64 chr13 40729778 40729998 -79014900 + AluJo SINE Alu 89 297 -15 2260 92 24 0 chr13 40730460 40730752 -79014146 - AluSg SINE Alu -3 307 9 21 0 0 0 chr13 40731057 40731078 -79013820 + AT_rich Low_complexity Low_complexity 1 21 0 2172 148 8 8 chr13 40732781 40733140 -79011758 - L1MB3 LINE L1 -3 6180 5822 251 305 17 0 chr13 40733397 40733456 -79011442 - MER5A DNA MER1_type -67 122 63 249 280 195 38 chr13 40733486 40733747 -79011151 - L3 LINE CR1 -196 1381 1080 1458 218 82 62 chr13 40733805 40734305 -79010593 + MLT1E3 LTR MaLR 115 624 0 814 293 14 20 chr13 40735778 40736075 -79008823 + L1MC4a LINE L1 5643 5937 -1871 516 261 68 6 chr13 40736151 40736327 -79008571 - LTR33A LTR ERVL 0 523 337 282 225 11 67 chr13 40737255 40737344 -79007554 + LTR16C LTR ERVL 408 491 0 201 233 0 0 chr13 40737575 40737618 -79007280 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 2537 83 0 0 chr13 40737891 40738204 -79006694 - AluSq SINE Alu 0 313 1 1939 141 0 0 chr13 40739300 40739570 -79005328 + AluSx SINE Alu 3 272 -40 272 25 50 0 chr13 40739582 40739622 -79005276 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 1987 164 2 97 chr13 40739795 40740046 -79004852 + MLT1A1 LTR MaLR 1 201 -164 2454 47 0 20 chr13 40740046 40740346 -79004552 - AluY SINE Alu -17 294 1 1987 164 2 97 chr13 40740346 40740497 -79004401 + MLT1A1 LTR MaLR 201 365 0 249 350 83 17 chr13 40740517 40740697 -79004201 + MIR SINE MIR 35 226 -36 224 388 84 14 chr13 40740739 40741097 -79003801 + L2 LINE L2 1896 2278 -1036 662 288 109 43 chr13 40741752 40742120 -79002778 + LTR16C LTR ERVL 100 491 0 2098 128 0 16 chr13 40742300 40742606 -79002292 - AluJb SINE Alu -11 301 1 1922 172 85 19 chr13 40744351 40744717 -79000181 + MLT1B LTR MaLR 1 390 0 2078 128 3 16 chr13 40744944 40745257 -78999641 + AluSx SINE Alu 1 309 -3 502 278 141 43 chr13 40745703 40746030 -78998868 + L2 LINE L2 2616 2974 -340 222 245 0 0 chr13 40746097 40746146 -78998752 + (TAA)n Simple_repeat Simple_repeat 2 50 0 873 307 39 14 chr13 40747929 40748366 -78996532 - L1MC4a LINE L1 -1867 5941 5494 1078 159 0 6 chr13 40748410 40748580 -78996318 - FRAM SINE Alu -7 169 1 39 0 0 0 chr13 40748843 40748882 -78996016 + AT_rich Low_complexity Low_complexity 1 39 0 848 141 0 40 chr13 40749562 40749711 -78995187 - FAM SINE Alu 0 49 1 250 197 106 0 chr13 40751015 40751081 -78993817 + LTR33A LTR ERVL 451 523 0 2255 111 3 0 chr13 40751986 40752293 -78992605 + AluSc SINE Alu 1 308 -1 583 286 25 20 chr13 40752723 40752926 -78991972 - ERVL LTR ERVL -772 4992 4789 2458 141 27 83 chr13 40753074 40753383 -78991515 + L1MA9 LINE L1 5790 6115 -197 674 238 16 0 chr13 40753383 40753505 -78991393 + FLAM_A SINE Alu 1 124 -9 2458 141 27 83 chr13 40753505 40753608 -78991290 + L1MA9 LINE L1 6115 6166 -146 1989 156 0 0 chr13 40753608 40753910 -78990988 + AluSq SINE Alu 1 302 -11 2458 141 27 83 chr13 40753910 40754050 -78990848 + L1MA9 LINE L1 6166 6312 0 329 287 153 0 chr13 40754678 40754887 -78990011 - L1MC4a LINE L1 -1532 4614 4374 381 305 6 12 chr13 40754980 40755144 -78989754 - L1MC4a LINE L1 -2106 4040 3878 2273 100 0 3 chr13 40755839 40756139 -78988759 + AluY SINE Alu 1 299 -12 2452 72 0 7 chr13 40756589 40756894 -78988004 - AluY SINE Alu -8 303 1 2035 157 103 0 chr13 40757789 40758120 -78986778 + MLT1A1 LTR MaLR 1 365 0 859 269 88 0 chr13 40758580 40758818 -78986080 + MIR SINE MIR 2 260 -2 3336 274 60 34 chr13 40758834 40759861 -78985037 - L2 LINE L2 -4 3309 2239 2400 171 44 35 chr13 40759861 40760340 -78984558 - MER66B LTR ERV1 -3 483 1 3336 274 60 34 chr13 40760340 40760799 -78984099 - L2 LINE L2 -1074 2239 1794 198 0 0 0 chr13 40761724 40761746 -78983152 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 414 0 0 0 chr13 40761745 40761791 -78983107 + (GA)n Simple_repeat Simple_repeat 1 46 0 1789 158 0 0 chr13 40761791 40762069 -78982829 - AluJb SINE Alu -34 278 1 306 309 44 97 chr13 40762580 40762900 -78981998 + L2 LINE L2 2804 3106 -166 212 305 0 0 chr13 40762956 40763015 -78981883 + L2 LINE L2 3255 3313 0 27 29 0 0 chr13 40763115 40763149 -78981749 + AT_rich Low_complexity Low_complexity 1 34 0 548 191 63 24 chr13 40764388 40764514 -78980384 + MIR SINE MIR 58 188 -74 203 337 139 10 chr13 40764739 40764829 -78980069 - MIR SINE MIR -34 228 151 1909 119 0 63 chr13 40764829 40765163 -78979735 + AluSx SINE Alu 1 315 0 203 337 139 10 chr13 40765163 40765273 -78979625 - MIR SINE MIR -111 151 1 2081 127 0 3 chr13 40765793 40766084 -78978814 - AluSx SINE Alu -22 290 1 349 254 0 0 chr13 40766193 40766260 -78978638 + MER1B DNA MER1_type 1 67 -270 14469 22 3 1 chr13 40766261 40768443 -78976455 + L1PA3 LINE L1 3722 5907 -248 2219 130 0 0 chr13 40768998 40769305 -78975593 + AluSx SINE Alu 1 307 -5 2212 120 0 0 chr13 40769654 40769954 -78974944 + AluSx SINE Alu 1 300 -12 27 0 0 0 chr13 40770055 40770082 -78974816 + AT_rich Low_complexity Low_complexity 1 27 0 325 267 53 107 chr13 40770093 40770192 -78974706 - MIR SINE MIR -59 203 119 824 239 183 56 chr13 40770192 40770585 -78974313 - MLT1J1 LTR MaLR 0 446 4 325 267 53 107 chr13 40770585 40770691 -78974207 - MIR SINE MIR -143 119 9 1209 170 24 10 chr13 40770810 40771016 -78973882 + MER6B DNA MER2_type 1 209 -1 188 254 64 36 chr13 40771232 40771342 -78973556 + L2 LINE L2 2888 3000 -313 655 248 55 30 chr13 40771375 40771577 -78973321 + L2 LINE L2 3107 3313 0 24 53 0 0 chr13 40771703 40771741 -78973157 + AT_rich Low_complexity Low_complexity 1 38 0 267 340 0 20 chr13 40772318 40772418 -78972480 + GA-rich Low_complexity Low_complexity 6 103 0 363 161 0 0 chr13 40773091 40773153 -78971745 - AluJo SINE Alu 0 302 241 810 208 22 44 chr13 40773153 40773336 -78971562 - AluJo SINE Alu -133 179 1 1193 171 49 53 chr13 40774040 40774303 -78970595 + MER58B DNA MER1_type 2 263 -78 1238 183 77 31 chr13 40774315 40774638 -78970260 - L1MA9 LINE L1 -9 6303 5966 498 231 0 0 chr13 40774640 40774731 -78970167 + MER58B DNA MER1_type 251 341 0 348 198 198 0 chr13 40774958 40775054 -78969844 + MER112 DNA MER1_type 141 255 -5 2162 91 3 11 chr13 40775285 40775570 -78969328 + AluSc SINE Alu 1 283 -26 330 255 0 47 chr13 40775570 40775666 -78969232 + L1MC4 LINE L1 6611 6703 -1339 363 212 0 0 chr13 40775705 40775851 -78969047 + (TA)n Simple_repeat Simple_repeat 1 146 0 818 32 0 0 chr13 40775870 40775965 -78968933 - L1PA8 LINE L1 -3 6169 6075 637 214 16 24 chr13 40776011 40776137 -78968761 - FLAM_C SINE Alu -5 138 14 283 82 41 41 chr13 40776947 40776996 -78967902 + MER116 DNA Mariner 1 49 -31 2469 73 6 19 chr13 40777051 40777368 -78967530 + AluSp SINE Alu 1 313 0 231 36 0 0 chr13 40778130 40778158 -78966740 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 826 175 30 48 chr13 40778160 40778326 -78966572 - AluJo SINE Alu -30 282 120 1918 120 0 0 chr13 40778658 40778925 -78965973 - AluSx SINE Alu -45 267 1 253 89 0 54 chr13 40779811 40779867 -78965031 + (CCCCG)n Simple_repeat Simple_repeat 5 57 0 281 310 0 41 chr13 40779873 40780044 -78964854 + C-rich Low_complexity Low_complexity 2 165 0 532 296 91 0 chr13 40780344 40780530 -78964368 - L1ME1 LINE L1 -5 6161 5959 362 159 79 0 chr13 40780535 40780598 -78964300 - L1ME LINE L1 -641 5521 5454 1890 110 10 53 chr13 40780703 40781004 -78963894 + MER1B DNA MER1_type 52 339 0 1504 160 12 8 chr13 40781321 40781571 -78963327 - AluJo SINE Alu -53 259 9 25 31 0 0 chr13 40781581 40781613 -78963285 + AT_rich Low_complexity Low_complexity 1 32 0 364 248 30 53 chr13 40782240 40782373 -78962525 + MLT1G LTR MaLR 9 138 -457 294 95 0 0 chr13 40782373 40782415 -78962483 + (T)n Simple_repeat Simple_repeat 1 42 0 459 220 52 181 chr13 40782415 40782713 -78962185 + MLT1G LTR MaLR 100 402 -193 1035 277 82 64 chr13 40782714 40783739 -78961159 + L1MEd LINE L1 596 1750 -740 464 260 78 50 chr13 40784191 40784433 -78960465 + MLT1J LTR MaLR 3 251 -260 314 253 75 48 chr13 40784637 40784783 -78960115 + L1MEd LINE L1 2126 2275 -3854 1854 166 67 9 chr13 40784859 40785202 -78959696 - MLT1A1 LTR MaLR 0 365 3 434 296 50 13 chr13 40785237 40785396 -78959502 + MIR SINE MIR 48 212 -50 849 329 124 41 chr13 40785440 40786531 -78958367 - L2 LINE L2 0 3272 1976 1564 152 53 14 chr13 40786531 40786814 -78958084 + AluJo SINE Alu 1 294 -18 849 329 124 41 chr13 40786814 40786962 -78957936 - L2 LINE L2 -1296 1976 1842 21 0 0 0 chr13 40787717 40787738 -78957160 + GC_rich Low_complexity Low_complexity 1 21 0 301 281 6 34 chr13 40787951 40788129 -78956769 + G-rich Low_complexity Low_complexity 2 174 0 264 223 125 54 chr13 40789323 40789435 -78955463 - L2 LINE L2 -1 3312 3193 242 304 0 14 chr13 40789808 40789877 -78955021 - Charlie4 DNA MER1_type -2 1959 1892 231 229 16 16 chr13 40789900 40789961 -78954937 + (TATG)n Simple_repeat Simple_repeat 3 63 0 1395 158 89 4 chr13 40790093 40790352 -78954546 - AluJo SINE Alu -10 302 22 1518 149 0 78 chr13 40790590 40790899 -78953999 - AluJo SINE Alu -27 285 1 2177 93 37 0 chr13 40791030 40791330 -78953568 - AluY SINE Alu 0 311 1 1356 171 6 73 chr13 40791756 40792071 -78952827 + AluJo SINE Alu 6 299 -13 477 139 0 38 chr13 40795096 40795175 -78949723 + AluS SINE Alu 225 300 -11 288 102 0 0 chr13 40795188 40795237 -78949661 + (TTG)n Simple_repeat Simple_repeat 3 51 0 1674 172 18 0 chr13 40795242 40795521 -78949377 - AluSx SINE Alu -28 284 1 331 204 43 75 chr13 40795847 40795940 -78948958 - MLT1K LTR MaLR -15 573 484 1051 287 111 28 chr13 40795987 40796349 -78948549 - MLT1K LTR MaLR -187 401 10 288 77 0 0 chr13 40796829 40796868 -78948030 + (TG)n Simple_repeat Simple_repeat 1 39 0 2519 146 28 2 chr13 40796959 40797385 -78947513 + L1MC3 LINE L1 7342 7778 -7 301 265 39 10 chr13 40797395 40797497 -78947401 - L1ME4a LINE L1 -76 6045 5941 347 200 14 0 chr13 40797586 40797656 -78947242 + MER58 DNA MER1_type 167 237 -104 13529 138 13 10 chr13 40797681 40798990 -78945908 - L1MA2 LINE L1 0 6304 5000 2196 110 0 16 chr13 40798990 40799298 -78945600 - AluSx SINE Alu -9 303 1 13529 138 13 10 chr13 40799298 40801303 -78943595 - L1MA2 LINE L1 -1304 5000 2983 21 0 0 0 chr13 40801760 40801781 -78943117 + AT_rich Low_complexity Low_complexity 1 21 0 486 0 0 0 chr13 40803529 40803583 -78941315 + (TG)n Simple_repeat Simple_repeat 2 55 0 370 321 58 32 chr13 40803583 40803773 -78941125 + MIR SINE MIR 19 213 -49 237 303 126 42 chr13 40803970 40804089 -78940809 + MIR3 SINE MIR 34 162 -46 1507 130 174 105 chr13 40804183 40804484 -78940414 + MSTB LTR MaLR 9 345 -81 9215 26 5 1 chr13 40804484 40806266 -78938632 + L1PA2 LINE L1 4369 6153 -2 1507 130 174 105 chr13 40806266 40806355 -78938543 + MSTB LTR MaLR 345 426 0 288 241 57 49 chr13 40806653 40806760 -78938138 + L1M4 LINE L1 5539 5647 -485 2448 223 74 60 chr13 40807015 40807235 -78937663 + L1MC5 LINE L1 6966 7181 -780 2273 236 73 21 chr13 40807235 40807799 -78937099 + MLT1E LTR MaLR 1 593 0 2448 223 74 60 chr13 40807799 40808509 -78936389 + L1MC5 LINE L1 7181 7909 -52 2509 138 131 17 chr13 40809370 40809962 -78934936 - LTR12 LTR ERV1 -226 2212 1 564 232 7 7 chr13 40810654 40810792 -78934106 + L1ME3A LINE L1 6020 6157 -13 289 139 0 0 chr13 40811007 40811050 -78933848 - L1MA8 LINE L1 -205 6086 6044 2453 143 34 5 chr13 40811175 40811554 -78933344 + MLT1B LTR MaLR 1 390 0 956 184 63 29 chr13 40811792 40811999 -78932899 - MER20 DNA MER1_type 0 219 6 1374 193 71 7 chr13 40813893 40814173 -78930725 + AluJo SINE Alu 1 298 -14 223 246 0 46 chr13 40814182 40814247 -78930651 + GA-rich Low_complexity Low_complexity 1 62 0 362 251 178 52 chr13 40814739 40814930 -78929968 - MLT1J LTR MaLR -267 244 30 204 267 0 0 chr13 40815760 40815805 -78929093 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1148 185 79 114 chr13 40816431 40816809 -78928089 + MLT1A1 LTR MaLR 1 365 0 226 273 0 0 chr13 40816896 40816951 -78927947 + L2 LINE L2 3246 3300 -13 1551 178 7 21 chr13 40817572 40817859 -78927039 + AluSx SINE Alu 28 310 -2 749 11 11 0 chr13 40818018 40818108 -78926790 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 1803 168 26 16 chr13 40819265 40819574 -78925324 + AluJo SINE Alu 1 312 0 751 143 77 50 chr13 40819602 40819784 -78925114 - MER5A DNA MER1_type 0 189 3 207 69 0 0 chr13 40820050 40820079 -78924819 + (A)n Simple_repeat Simple_repeat 1 29 0 374 253 68 56 chr13 40820436 40820598 -78924300 - MER5B DNA MER1_type -14 164 1 242 296 200 9 chr13 40820791 40820906 -78923992 - MIR SINE MIR -106 156 20 23 0 0 29 chr13 40823018 40823029 -78921869 + AT_rich Low_complexity Low_complexity 1 11 -22 1919 138 3 14 chr13 40823029 40823326 -78921572 + AluSx SINE Alu 1 294 -18 23 0 0 29 chr13 40823326 40823348 -78921550 + AT_rich Low_complexity Low_complexity 11 33 0 442 327 108 23 chr13 40823821 40824127 -78920771 + L2 LINE L2 2494 2825 -489 2386 222 66 85 chr13 40824132 40824368 -78920530 + MER21B LTR ERV1 1 240 -623 2112 131 40 37 chr13 40824368 40824742 -78920156 - THE1C LTR MaLR 0 375 1 2386 222 66 85 chr13 40824742 40825320 -78919578 + MER21B LTR ERV1 240 800 -63 370 323 92 51 chr13 40827233 40827549 -78917349 - L2 LINE L2 -15 3257 2929 252 86 0 0 chr13 40827549 40827584 -78917314 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 716 245 126 39 chr13 40830000 40830310 -78914588 + MLT1J LTR MaLR 3 339 -172 261 263 72 26 chr13 40831219 40831371 -78913527 - Charlie7 DNA MER1_type -3 2609 2451 480 284 111 20 chr13 40833431 40833700 -78911198 - L1 LINE L1 -1818 4328 4034 283 202 48 0 chr13 40833827 40833911 -78910987 - L1 LINE L1 -2196 3950 3863 1651 169 6 32 chr13 40833973 40834287 -78910611 - AluJb SINE Alu -6 306 1 465 203 32 96 chr13 40834820 40835007 -78909891 + MER104 DNA MER2_type 3 177 -3 180 324 28 83 chr13 40835575 40835720 -78909178 + L2 LINE L2 1399 1535 -1779 449 266 135 73 chr13 40835925 40836324 -78908574 + MLT1L LTR MaLR 191 614 -1 216 97 0 0 chr13 40836341 40836372 -78908526 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 42 0 0 chr13 40836490 40836514 -78908384 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3594 98 6 2 chr13 40836514 40836995 -78907903 - L1PB2 LINE L1 -3 6148 5666 182 269 58 19 chr13 40837039 40837091 -78907807 - L2 LINE L2 -19 3294 3241 181 247 72 21 chr13 40838471 40838568 -78906330 - L2 LINE L2 -224 3048 2947 181 309 0 0 chr13 40838747 40838789 -78906109 + L2 LINE L2 3209 3250 -22 405 0 0 0 chr13 40838931 40838976 -78905922 + (CA)n Simple_repeat Simple_repeat 2 46 0 2072 100 4 11 chr13 40838988 40839293 -78905605 + AluSx SINE Alu 7 309 0 3210 120 52 19 chr13 40839587 40840127 -78904771 - MER34B LTR ERV1 -7 558 1 1957 139 0 17 chr13 40840356 40840670 -78904228 - AluSx SINE Alu 0 309 1 204 125 0 0 chr13 40841201 40841233 -78903665 + (CA)n Simple_repeat Simple_repeat 2 33 0 295 21 0 21 chr13 40841500 40841548 -78903350 + AluSp/q SINE Alu 257 303 0 555 239 31 44 chr13 40842233 40842392 -78902506 + MLT1C LTR MaLR 23 179 -326 * 1056 93 21 0 chr13 40842390 40842530 -78902368 - MER50 LTR ERV1 -23 711 569 1376 49 55 11 chr13 40842530 40842713 -78902185 + AluYa5 SINE Alu 105 295 -16 1181 147 21 11 chr13 40842713 40842903 -78901995 - MER50 LTR ERV1 -161 573 382 2047 164 40 5 chr13 40843192 40843565 -78901333 - MER50 LTR ERV1 -348 386 1 903 211 107 25 chr13 40843566 40843586 -78901312 + MLT1C LTR MaLR 165 182 -285 2025 137 3 13 chr13 40843586 40843899 -78900999 + AluSx SINE Alu 1 310 -2 903 211 107 25 chr13 40843899 40844158 -78900740 + MLT1C LTR MaLR 182 467 0 2333 165 40 2 chr13 40844932 40845337 -78899561 + MLT2B1 LTR ERVL 3 422 -98 417 39 0 0 chr13 40845967 40846018 -78898880 + (TG)n Simple_repeat Simple_repeat 2 52 0 1078 187 61 108 chr13 40846365 40846760 -78898138 + MLT1C LTR MaLR 103 467 0 2188 121 0 3 chr13 40848817 40849122 -78895776 - AluSg SINE Alu -6 304 1 362 329 104 33 chr13 40849364 40849604 -78895294 + L2 LINE L2 3016 3272 0 3961 134 31 5 chr13 40849639 40850227 -78894671 + LTR26 LTR ERV1 1 603 0 343 111 0 19 chr13 40850789 40850843 -78894055 - L1PA2 LINE L1 -5 6150 6098 259 294 44 114 chr13 40852832 40853175 -78891723 - L2 LINE L2 -37 3235 2917 2278 103 3 3 chr13 40854084 40854394 -78890504 + AluSg SINE Alu 1 310 0 587 252 86 43 chr13 40856824 40857058 -78887840 - MIR SINE MIR 0 262 19 288 346 85 13 chr13 40857183 40857336 -78887562 + MIR SINE MIR 21 184 -78 23 0 0 0 chr13 40858428 40858451 -78886447 + AT_rich Low_complexity Low_complexity 1 23 0 350 231 67 10 chr13 40859195 40859299 -78885599 + MIR SINE MIR 122 231 -31 1829 139 3 21 chr13 40859323 40859611 -78885287 + AluSx SINE Alu 28 310 -2 5007 126 14 28 chr13 40859794 40860603 -78884295 - L1PA16 LINE L1 -47 6119 5323 5485 63 16 3 chr13 40860603 40861271 -78883627 - L1PA7 LINE L1 -6 6148 5472 13687 94 1 1 chr13 40861271 40863146 -78881752 - L1PA7 LINE L1 -1308 4838 2963 942 27 18 0 chr13 40863186 40863296 -78881602 + L1PA4 LINE L1 6044 6155 0 530 194 10 0 chr13 40863298 40863396 -78881502 - HAL1 LINE L1 -866 1641 1543 360 289 52 21 chr13 40863869 40864045 -78880853 - MLT1H LTR MaLR -199 210 68 198 0 0 0 chr13 40864271 40864293 -78880605 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 850 96 45 39 chr13 40864431 40864587 -78880311 + L1PA6 LINE L1 5996 6152 -2 23 0 0 0 chr13 40864587 40864610 -78880288 + AT_rich Low_complexity Low_complexity 1 23 0 210 247 216 21 chr13 40864704 40864801 -78880097 + MIR SINE MIR 31 146 -116 264 248 20 20 chr13 40865533 40865634 -78879264 + CT-rich Low_complexity Low_complexity 3 103 0 21 0 0 0 chr13 40865645 40865666 -78879232 + AT_rich Low_complexity Low_complexity 1 21 0 1516 209 0 22 chr13 40867553 40867864 -78877034 + AluJo SINE Alu 5 308 -4 203 293 53 0 chr13 40867973 40868048 -78876850 - MIR SINE MIR -26 236 158 * 257 303 40 0 chr13 40868047 40868123 -78876775 + L2 LINE L2 2930 3008 -264 245 278 0 14 chr13 40868433 40868505 -78876393 + CT-rich Low_complexity Low_complexity 2 72 0 266 267 17 0 chr13 40868508 40868568 -78876330 + MIR SINE MIR 1 61 -201 2270 108 0 0 chr13 40869310 40869605 -78875293 + AluSx SINE Alu 1 295 -17 295 255 107 41 chr13 40871285 40871348 -78873550 - L1ME4a LINE L1 -2 6119 6062 2085 138 0 0 chr13 40871348 40871644 -78873254 + AluSq SINE Alu 1 296 -17 295 255 107 41 chr13 40871644 40871851 -78873047 - L1ME4a LINE L1 -59 6062 5831 12050 98 12 28 chr13 40871944 40873918 -78870980 + L1P3 LINE L1 2 1980 -4481 11550 226 24 4 chr13 40873920 40877167 -78867731 - L1PA15-16 LINE L1 -814 6035 2719 2235 124 47 11 chr13 40877167 40877529 -78867369 - THE1C LTR MaLR 0 375 1 1008 91 19 0 chr13 40877529 40877683 -78867215 - THE1C-int LTR MaLR 0 1580 1424 * 1350 216 22 9 chr13 40877675 40877990 -78866908 - L1P LINE L1 -2305 3841 3523 8395 126 9 54 chr13 40878007 40879497 -78865401 - THE1C-int LTR MaLR -157 1423 1 1909 149 68 11 chr13 40879497 40879852 -78865046 - THE1C LTR MaLR 0 375 1 346 102 0 0 chr13 40879852 40879901 -78864997 - L1PA15-16 LINE L1 -4126 2723 2675 331 70 0 0 chr13 40879901 40879944 -78864954 - HY3 scRNA scRNA -58 43 1 3546 129 17 5 chr13 40879945 40880535 -78864363 - L1PA15-16 LINE L1 -4164 2685 2089 711 300 64 9 chr13 40881687 40881920 -78862978 - MIR SINE MIR 0 262 17 452 289 30 15 chr13 40881912 40882047 -78862851 - MIR SINE MIR -79 183 47 * 425 247 230 25 chr13 40882858 40883055 -78861843 + MIR SINE MIR 3 242 -20 325 284 9 9 chr13 40883182 40883298 -78861600 - MARNA DNA Mariner -196 390 275 271 264 28 0 chr13 40883774 40883846 -78861052 + MIR SINE MIR 63 136 -126 517 212 61 0 chr13 40883958 40884090 -78860808 + MER69 DNA AcHobo 1 140 -1086 1857 154 9 31 chr13 40884118 40884436 -78860462 - AluJo SINE Alu -1 311 1 2680 32 3 0 chr13 40884444 40884754 -78860144 - AluY SINE Alu 0 311 1 366 182 0 0 chr13 40884754 40884820 -78860078 + MER69 DNA AcHobo 2458 2523 -3 207 0 0 0 chr13 40884985 40885008 -78859890 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 387 0 0 0 chr13 40885808 40885851 -78859047 + (CA)n Simple_repeat Simple_repeat 2 44 0 407 292 42 8 chr13 40886144 40886264 -78858634 - L2 LINE L2 -3 3269 3146 1043 221 56 39 chr13 40886505 40886900 -78857998 - MLT1E2 LTR MaLR -4 622 117 3787 116 68 11 chr13 40887120 40887777 -78857121 + L1MB2 LINE L1 5446 6140 -31 2198 217 46 79 chr13 40887175 40888040 -78856858 + L1MC1 LINE L1 5497 6333 0 * 211 274 36 48 chr13 40888234 40888318 -78856580 + MIR3 SINE MIR 125 207 -1 1282 251 52 6 chr13 40888537 40889020 -78855878 + L1MB2 LINE L1 2735 3239 -2907 * 4965 167 21 3 chr13 40889009 40890260 -78854638 + L1MB2 LINE L1 4894 6170 -1 194 358 8 50 chr13 40890651 40890771 -78854127 + L2 LINE L2 308 422 -2892 234 91 0 0 chr13 40890794 40890827 -78854071 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 523 132 0 0 chr13 40891123 40891214 -78853684 + L1MA5 LINE L1 6210 6300 0 616 277 0 0 chr13 40891281 40891440 -78853458 + L1MD2 LINE L1 5993 6151 -208 838 159 23 0 chr13 40891443 40891575 -78853323 - FRAM SINE Alu -31 145 11 3554 180 74 3 chr13 40891650 40891991 -78852907 - Charlie1a DNA MER1_type -1540 1221 906 2201 146 28 25 chr13 40891991 40892354 -78852544 - THE1B LTR MaLR 0 364 1 3554 180 74 3 chr13 40892354 40892768 -78852130 - Charlie1a DNA MER1_type -1855 906 412 389 266 0 0 chr13 40892877 40892971 -78851927 - Charlie1a DNA MER1_type -1207 248 155 277 177 16 0 chr13 40893692 40893754 -78851144 - Charlie1a DNA MER1_type -1317 138 76 1570 199 44 18 chr13 40894712 40895098 -78849800 - L1MC2 LINE L1 -2 6342 5947 * 1679 253 10 69 chr13 40895091 40895811 -78849087 - L1M4 LINE L1 -2267 3879 3203 586 158 55 0 chr13 40895823 40895950 -78848948 + L1MC3 LINE L1 7645 7778 -7 590 350 38 25 chr13 40896184 40896550 -78848348 + L1MC/D LINE L1 2788 3158 -2988 306 308 63 86 chr13 40896897 40897280 -78847618 + L1MC/D LINE L1 3617 3990 -2156 243 0 0 0 chr13 40897298 40897325 -78847573 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 345 24 0 0 chr13 40897324 40897366 -78847532 + (TG)n Simple_repeat Simple_repeat 1 42 0 301 263 131 15 chr13 40897409 40897546 -78847352 + L1MC/D LINE L1 4071 4223 -1923 1313 254 107 67 chr13 40898070 40898638 -78846260 - MLT2E LTR ERVL 0 628 38 345 309 135 62 chr13 40898731 40899278 -78845620 + L1MC/D LINE L1 4451 5037 -1109 405 86 0 0 chr13 40899339 40899397 -78845501 + (TC)n Simple_repeat Simple_repeat 1 58 0 358 330 97 26 chr13 40899559 40899786 -78845112 + L1MC/D LINE L1 5502 5744 -2064 2360 108 0 3 chr13 40900257 40900563 -78844335 + AluSg SINE Alu 1 305 -5 180 269 54 108 chr13 40901242 40901312 -78843586 - MIR SINE MIR -10 252 180 2094 107 4 0 chr13 40901312 40901582 -78843316 + AluSx SINE Alu 38 308 -4 180 269 54 108 chr13 40901582 40901697 -78843201 - MIR SINE MIR -82 180 77 183 208 19 38 chr13 40901889 40901942 -78842956 - L2 LINE L2 -4 3268 3217 236 232 81 40 chr13 40902892 40902991 -78841907 - L2 LINE L2 -1 3271 3169 745 240 161 0 chr13 40903011 40903228 -78841670 - MIR SINE MIR 0 262 11 715 202 0 0 chr13 40903737 40903905 -78840993 - L1P LINE L1 -3240 2906 2739 359 309 116 10 chr13 40903915 40904122 -78840776 - MLT1H LTR MaLR -250 299 71 309 293 50 21 chr13 40904466 40904606 -78840292 - L1M4 LINE L1 -2323 3823 3680 561 301 71 61 chr13 40904611 40905027 -78839871 - HAL1 LINE L1 -1002 1505 1143 1738 191 13 3 chr13 40905027 40905336 -78839562 - AluJo SINE Alu 0 312 1 561 301 71 61 chr13 40905336 40905520 -78839378 - HAL1 LINE L1 -1364 1143 962 1793 158 83 4 chr13 40905985 40906399 -78838499 - MLT1D LTR MaLR -10 495 1 203 296 69 89 chr13 40906772 40906975 -78837923 - L2 LINE L2 -34 3238 3040 208 208 42 0 chr13 40907141 40907189 -78837709 + CT-rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr13 40908761 40908782 -78836116 + AT_rich Low_complexity Low_complexity 1 21 0 225 304 108 49 chr13 40908796 40908898 -78836000 + L2 LINE L2 3149 3256 -16 522 221 33 33 chr13 40908912 40909034 -78835864 - L2 LINE L2 0 3313 3192 2670 134 13 18 chr13 40909093 40909549 -78835349 + L1MA8 LINE L1 5334 5787 -504 22 0 0 0 chr13 40909685 40909707 -78835191 + AT_rich Low_complexity Low_complexity 1 22 0 2853 128 21 21 chr13 40909723 40910193 -78834705 + L1MA8 LINE L1 5769 6241 -50 2095 110 7 17 chr13 40910193 40910493 -78834405 + AluSq SINE Alu 1 297 -16 2853 128 21 21 chr13 40910493 40910544 -78834354 + L1MA8 LINE L1 6240 6290 -1 457 255 28 49 chr13 40910858 40911105 -78833793 - MLT1K LTR MaLR -28 560 319 267 326 50 32 chr13 40911294 40911512 -78833386 - MLT1K LTR MaLR -252 336 115 235 206 0 96 chr13 40911594 40911667 -78833231 - Charlie5 DNA MER1_type -2537 75 10 2203 178 44 36 chr13 40911749 40912250 -78832648 - MLT1D LTR MaLR 0 505 1 1189 316 125 28 chr13 40912260 40913225 -78831673 - L2 LINE L2 -337 2977 1919 429 283 31 50 chr13 40913336 40913495 -78831403 + MIR SINE MIR 2 157 -105 292 346 83 28 chr13 40913695 40913912 -78830986 - L2 LINE L2 0 3272 3044 389 285 164 6 chr13 40914030 40914195 -78830703 - MIR3 SINE MIR -6 202 12 3683 146 8 0 chr13 40914615 40915216 -78829682 + L1PA16 LINE L1 5556 6161 -5 244 313 104 10 chr13 40916764 40916956 -78827942 + L1MC/D LINE L1 5697 5906 -1902 210 340 10 0 chr13 40916956 40917053 -78827845 + (CATATA)n Simple_repeat Simple_repeat 1 98 0 702 274 63 30 chr13 40917271 40917508 -78827390 - MIR SINE MIR 0 262 18 2205 125 0 0 chr13 40920342 40920654 -78824244 - AluSx SINE Alu 0 312 1 1252 132 37 25 chr13 40921412 40921655 -78823243 - L1MA8 LINE L1 -3 6288 6043 2002 147 221 116 chr13 40921882 40922143 -78822755 + L1MC3 LINE L1 6816 7048 -737 237 256 35 12 chr13 40922143 40922229 -78822669 + MLT1F1 LTR MaLR 37 124 -443 2002 147 221 116 chr13 40922229 40922656 -78822242 + L1MC3 LINE L1 7048 7670 -115 400 186 35 0 chr13 40922666 40922752 -78822146 - L1MC3 LINE L1 -33 7752 7664 307 169 0 0 chr13 40922800 40922859 -78822039 + L1MC3 LINE L1 6995 7053 -732 668 142 47 0 chr13 40923031 40923158 -78821740 + L1MC3 LINE L1 7653 7785 0 205 266 64 85 chr13 40923162 40923256 -78821642 - MER5A DNA MER1_type -58 131 29 270 56 0 0 chr13 40924175 40924211 -78820687 + (TG)n Simple_repeat Simple_repeat 2 37 0 1066 173 70 38 chr13 40925724 40926037 -78818861 - MER33 DNA MER1_type 0 324 2 1919 185 56 23 chr13 40926114 40926594 -78818304 - MLT1D LTR MaLR -9 496 1 476 320 31 15 chr13 40927340 40927528 -78817370 - MIR3 SINE MIR -1 207 16 578 236 181 23 chr13 40927578 40927837 -78817061 - L2 LINE L2 0 3313 3014 186 43 0 0 chr13 40929302 40929325 -78815573 + (T)n Simple_repeat Simple_repeat 1 23 0 2191 119 6 19 chr13 40929371 40929682 -78815216 - AluSx SINE Alu -5 307 1 349 277 72 100 chr13 40929798 40930047 -78814851 - L1ME3A LINE L1 -3 6167 5926 491 264 98 37 chr13 40930124 40930450 -78814448 - L1ME LINE L1 -4864 1255 910 2353 108 0 0 chr13 40930452 40930757 -78814141 + AluSq SINE Alu 1 305 -8 1593 134 6 111 chr13 40930757 40931062 -78813836 + MLT2D LTR ERVL 102 367 -47 369 0 0 0 chr13 40931062 40931103 -78813795 + (CA)n Simple_repeat Simple_repeat 2 42 0 1593 134 6 111 chr13 40931103 40931147 -78813751 + MLT2D LTR ERVL 367 414 0 262 281 48 5 chr13 40931279 40931410 -78813488 - L1ME LINE L1 -5958 161 20 2902 64 11 5 chr13 40932570 40932943 -78811955 + THE1C LTR MaLR 1 375 0 299 261 119 40 chr13 40933000 40933165 -78811733 + MIR SINE MIR 2 191 -67 305 280 100 14 chr13 40933324 40933573 -78811325 - L1MDa LINE L1 -4621 1761 1551 250 235 153 20 chr13 40933667 40933765 -78811133 - L1ME3A LINE L1 -94 6076 5966 22 0 0 0 chr13 40934079 40934101 -78810797 + AT_rich Low_complexity Low_complexity 1 22 0 2142 106 0 3 chr13 40934163 40934456 -78810442 + AluSq SINE Alu 6 297 -16 350 323 101 0 chr13 40934749 40934907 -78809991 + L1MEd LINE L1 478 651 -5468 183 339 0 16 chr13 40934912 40934974 -78809924 - MIR SINE MIR -198 64 4 769 350 81 16 chr13 40935016 40935521 -78809377 - L3 LINE CR1 -30 1547 1010 198 242 111 92 chr13 40935626 40935779 -78809119 + L2 LINE L2 2869 3024 -248 522 180 18 9 chr13 40935872 40935983 -78808915 + MER6 DNA MER2_type 33 865 0 184 348 22 45 chr13 40936001 40936090 -78808808 + L2 LINE L2 3134 3220 -52 2306 136 67 0 chr13 40936952 40937343 -78807555 + MSTA LTR MaLR 1 417 -11 289 279 260 9 chr13 40937365 40937584 -78807314 - L3 LINE CR1 -987 590 317 561 263 89 41 chr13 40937786 40938079 -78806819 - MER102b DNA MER1_type -13 328 22 1171 159 87 35 chr13 40938738 40939027 -78805871 + L1MC1 LINE L1 6029 6332 -1 213 195 0 0 chr13 40942076 40942117 -78802781 + (CA)n Simple_repeat Simple_repeat 2 42 0 346 272 18 9 chr13 40942123 40942237 -78802661 + GA-rich Low_complexity Low_complexity 6 120 0 210 37 0 0 chr13 40942406 40942433 -78802465 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 396 0 0 0 chr13 40942748 40942792 -78802106 + (CA)n Simple_repeat Simple_repeat 2 45 0 195 42 0 0 chr13 40944117 40944141 -78800757 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 633 133 91 14 chr13 40944295 40944438 -78800460 - L1MB7 LINE L1 0 6184 6031 577 297 54 18 chr13 40944700 40944922 -78799976 - MIR SINE MIR -18 244 15 1851 148 19 13 chr13 40945521 40945831 -78799067 + AluSx SINE Alu 1 312 0 947 240 86 1 chr13 40945851 40946086 -78798812 - MIR SINE MIR -9 253 10 24 0 0 0 chr13 40946823 40946847 -78798051 + AT_rich Low_complexity Low_complexity 1 24 0 2191 127 0 7 chr13 40948228 40948536 -78796362 - AluSx SINE Alu -6 306 1 21 0 0 0 chr13 40948834 40948855 -78796043 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 40949169 40949190 -78795708 + AT_rich Low_complexity Low_complexity 1 21 0 363 244 101 8 chr13 40951219 40951338 -78793560 + MER94 DNA DNA 4 133 -1 2179 99 7 20 chr13 40951826 40952128 -78792770 - AluSx SINE Alu -14 298 1 397 326 7 14 chr13 40952234 40952381 -78792517 + MER5A DNA MER1_type 7 152 -37 558 288 191 50 chr13 40952432 40952894 -78792004 - L3 LINE CR1 -616 961 435 23 68 0 0 chr13 40953987 40954031 -78790867 + AT_rich Low_complexity Low_complexity 1 44 0 713 270 85 86 chr13 40954817 40955438 -78789460 + L2 LINE L2 2653 3270 -43 880 183 0 0 chr13 40955713 40955855 -78789043 + FLAM_C SINE Alu 1 142 -1 1480 188 42 27 chr13 40956569 40956602 -78788296 - MER58B DNA MER1_type -2079 341 310 1858 125 81 36 chr13 40956602 40956961 -78787937 + THE1C LTR MaLR 1 375 0 1480 188 42 27 chr13 40956961 40957263 -78787635 - MER58B DNA MER1_type -2110 310 1 2343 97 0 0 chr13 40957648 40957946 -78786952 + AluSx SINE Alu 1 298 -14 547 191 0 0 chr13 40958193 40958287 -78786611 - Tigger7 DNA MER2_type -1 2486 2393 * 1051 211 155 4 chr13 40958264 40958515 -78786383 - Tigger7 DNA MER2_type -443 290 2 216 301 87 19 chr13 40958545 40958648 -78786250 + MIR SINE MIR 62 171 -91 27 62 0 0 chr13 40965802 40965850 -78779048 + AT_rich Low_complexity Low_complexity 1 48 0 573 261 48 0 chr13 40967423 40967588 -78777310 + L2 LINE L2 2879 3051 -262 308 225 150 53 chr13 40967697 40967884 -78777014 + L1ME4a LINE L1 5825 6029 -92 2230 119 10 3 chr13 40967998 40968300 -78776598 + AluSx SINE Alu 1 304 -8 339 230 163 7 chr13 40968659 40968794 -78776104 + MIR SINE MIR 92 247 -15 304 200 0 0 chr13 40969338 40969393 -78775505 + Tigger5 DNA MER2_type 1 55 -2268 413 221 0 0 chr13 40969402 40969488 -78775410 + Tigger5 DNA MER2_type 2237 2322 -1 2088 115 21 0 chr13 40971152 40971440 -78773458 + AluSx SINE Alu 1 294 -18 258 274 74 8 chr13 40971646 40972628 -78772270 + L1MD3 LINE L1 6546 7777 -218 234 213 0 75 chr13 40972760 40972840 -78772058 + L1MC4 LINE L1 7957 8030 -12 538 266 61 76 chr13 40972983 40973325 -78771573 + L1MC4 LINE L1 6762 7098 -944 953 265 74 70 chr13 40973366 40974410 -78770488 + L1MC4 LINE L1 7006 8041 -1 2357 78 0 3 chr13 40975115 40975409 -78769489 + AluY SINE Alu 1 293 -18 195 333 121 0 chr13 40975577 40975709 -78769189 - L2 LINE L2 -1218 2096 1949 232 273 91 11 chr13 40975902 40975990 -78768908 + L2 LINE L2 3219 3313 0 204 97 0 0 chr13 40976491 40976522 -78768376 + (TAAAAA)n Simple_repeat Simple_repeat 3 33 0 217 268 18 36 chr13 40977147 40977203 -78767695 - L2 LINE L2 -50 3222 3168 771 208 0 0 chr13 40977356 40977486 -78767412 + FLAM_A SINE Alu 1 130 -3 283 311 88 20 chr13 40977909 40978057 -78766841 + MIR SINE MIR 59 216 -46 260 272 76 0 chr13 40978362 40978454 -78766444 + L1ME4a LINE L1 5565 5663 -458 506 318 71 38 chr13 40978471 40978710 -78766188 - MIR SINE MIR -14 248 2 356 272 233 17 chr13 40980151 40980438 -78764460 + L1MC4a LINE L1 5598 5946 -1862 1827 139 77 0 chr13 40980442 40980729 -78764169 + AluSx SINE Alu 1 309 -3 395 285 91 29 chr13 40980883 40981125 -78763773 + L1ME4a LINE L1 5861 6117 -4 202 272 132 52 chr13 40981283 40981419 -78763479 - MER5A DNA MER1_type 0 189 43 211 312 148 52 chr13 40981504 40981982 -78762916 + L2 LINE L2 2135 2658 -656 508 246 199 9 chr13 40982409 40982620 -78762278 + L1MEc LINE L1 100 350 -6046 2184 259 70 53 chr13 40982757 40983381 -78761517 + L1MEc LINE L1 608 1220 -5176 198 118 0 0 chr13 40983381 40983415 -78761483 + (TGAG)n Simple_repeat Simple_repeat 3 36 0 2184 259 70 53 chr13 40983415 40984280 -78760618 + L1MEc LINE L1 1220 2123 -4273 1048 177 52 5 chr13 40984539 40984731 -78760167 - MER20 DNA MER1_type 0 219 19 1762 157 3 7 chr13 40986152 40986439 -78758459 + AluJb SINE Alu 1 286 -26 24 0 0 0 chr13 40986440 40986464 -78758434 + AT_rich Low_complexity Low_complexity 1 24 0 213 352 48 9 chr13 40986745 40986850 -78758048 + L2 LINE L2 3189 3297 -16 503 257 108 0 chr13 40986869 40987017 -78757881 - MIR SINE MIR -22 240 77 1904 156 3 7 chr13 40987995 40988297 -78756601 - AluSx SINE Alu -11 301 1 27 0 0 0 chr13 40988884 40988911 -78755987 + AT_rich Low_complexity Low_complexity 1 27 0 202 169 31 46 chr13 40990548 40990613 -78754285 + (CCCCG)n Simple_repeat Simple_repeat 5 68 0 198 0 0 0 chr13 40990625 40990647 -78754251 + (CCG)n Simple_repeat Simple_repeat 3 24 0 364 324 99 7 chr13 40991773 40991915 -78752983 - L2 LINE L2 -261 3052 2898 1385 140 88 6 chr13 40991960 40992380 -78752518 - LTR19A LTR ERV1 0 486 1 387 338 61 19 chr13 40992391 40992604 -78752294 - L2 LINE L2 -494 2820 2599 246 366 53 15 chr13 40992967 40993098 -78751800 + MIR3 SINE MIR 37 172 -36 1546 203 103 27 chr13 40993875 40994054 -78750844 - L1MB8 LINE L1 0 6178 6014 2240 47 27 23 chr13 40994054 40994353 -78750545 + L1PA6 LINE L1 5852 6151 -3 1546 203 103 27 chr13 40994353 40994647 -78750251 - L1MB8 LINE L1 -164 6014 5669 531 277 78 106 chr13 40994869 40995302 -78749596 + L2 LINE L2 2836 3256 -16 197 393 0 12 chr13 40995774 40995858 -78749040 - MIR SINE MIR -72 136 54 1426 173 100 4 chr13 40996311 40996582 -78748316 - AluJo SINE Alu -15 297 1 2864 133 31 0 chr13 40996782 40997235 -78747663 - LTR24 LTR ERV1 0 467 1 426 248 291 26 chr13 40998616 40998846 -78746052 + L3 LINE CR1 954 1244 -333 27 49 0 0 chr13 40999052 40999093 -78745805 + AT_rich Low_complexity Low_complexity 1 41 0 2802 114 20 20 chr13 41000771 41001157 -78743741 + MER83 LTR ERV1 1 389 -59 2128 125 45 31 chr13 41001157 41001516 -78743382 - THE1B LTR MaLR 0 364 1 2802 114 20 20 chr13 41001516 41001577 -78743321 + MER83 LTR ERV1 388 448 0 1777 114 34 9 chr13 41003507 41003842 -78741056 - MER61C LTR ERV1 0 434 1 29 0 0 0 chr13 41004083 41004112 -78740786 + AT_rich Low_complexity Low_complexity 1 29 0 2119 108 14 0 chr13 41004120 41004431 -78740467 + AluSx SINE Alu 1 315 0 418 338 102 9 chr13 41004852 41005175 -78739723 - L1MB8 LINE L1 -523 5647 5295 2472 218 95 13 chr13 41005190 41005937 -78738961 + L1ME1 LINE L1 5353 6160 -6 386 314 31 0 chr13 41005960 41006119 -78738779 - L1MB8 LINE L1 -856 5290 5127 408 304 24 19 chr13 41006863 41007070 -78737828 - L1MB8 LINE L1 -1036 5110 4903 21 57 0 0 chr13 41007383 41007418 -78737480 + AT_rich Low_complexity Low_complexity 1 35 0 523 154 107 0 chr13 41007564 41007713 -78737185 - MER33 DNA MER1_type -7 356 192 2147 112 7 16 chr13 41008049 41008353 -78736545 - AluSq SINE Alu -12 301 1 504 315 40 11 chr13 41008365 41008641 -78736257 - L1ME LINE L1 -303 5818 5535 646 181 110 0 chr13 41008735 41008890 -78736008 - MER33 DNA MER1_type -152 172 1 347 183 28 0 chr13 41009146 41009217 -78735681 - MLT1A1 LTR MaLR 0 374 302 1697 171 19 7 chr13 41009244 41009553 -78735345 - MLT1A1 LTR MaLR -52 313 1 312 260 67 10 chr13 41009622 41009726 -78735172 + L1M4 LINE L1 2869 2978 -3168 1671 120 0 0 chr13 41009729 41009946 -78734952 + AluSg/x SINE Alu 77 293 -17 281 242 0 0 chr13 41010333 41010399 -78734499 + L1M4 LINE L1 2963 3028 -3118 355 302 45 64 chr13 41010432 41010637 -78734261 + L1M4 LINE L1 3485 3685 -2461 258 353 81 22 chr13 41010697 41010833 -78734065 - L2 LINE L2 -2 3270 3127 27 29 0 0 chr13 41011257 41011291 -78733607 + AT_rich Low_complexity Low_complexity 1 34 0 1293 179 0 0 chr13 41011298 41011505 -78733393 - AluJo SINE Alu -105 207 1 304 324 18 0 chr13 41012077 41012188 -78732710 - L1M4 LINE L1 -3316 2830 2718 798 150 34 0 chr13 41012254 41012401 -78732497 + L1MA6 LINE L1 6144 6295 -5 2387 85 0 3 chr13 41012430 41012737 -78732161 + AluSc SINE Alu 1 306 -3 320 368 22 44 chr13 41012772 41012954 -78731944 - MER5B DNA MER1_type 0 178 1 976 189 6 0 chr13 41013016 41013196 -78731702 + MER58A DNA MER1_type 40 220 -4 259 210 32 172 chr13 41013198 41013264 -78731634 - MER112 DNA MER1_type -33 227 193 1514 136 0 117 chr13 41013264 41013604 -78731294 - AluJb SINE Alu 0 306 4 259 210 32 172 chr13 41013604 41013693 -78731205 - MER112 DNA MER1_type -67 193 93 1593 122 52 4 chr13 41013743 41014013 -78730885 - Tigger3b DNA MER2_type 0 1231 949 267 184 46 35 chr13 41014027 41014201 -78730697 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 226 79 79 0 chr13 41014203 41014266 -78730632 + (TA)n Simple_repeat Simple_repeat 1 68 0 1912 114 0 15 chr13 41014266 41014539 -78730359 - AluSx SINE Alu -23 289 21 4678 114 63 54 chr13 41014543 41015170 -78729728 - Tigger3b DNA MER2_type -2086 942 302 2184 114 7 3 chr13 41015170 41015469 -78729429 + AluSx SINE Alu 3 302 -10 4678 114 63 54 chr13 41015469 41015774 -78729124 - Tigger3b DNA MER2_type -2726 302 1 225 128 128 0 chr13 41016145 41016192 -78728706 + MIR SINE MIR 138 190 -72 803 122 0 38 chr13 41016266 41016397 -78728501 - FLAM_C SINE Alu -7 126 1 2167 106 3 0 chr13 41016826 41017110 -78727788 + AluSg SINE Alu 11 295 -15 196 266 94 0 chr13 41017244 41017308 -78727590 - L3 LINE CR1 -13 1564 1495 359 280 93 0 chr13 41017309 41017416 -78727482 - L2 LINE L2 -4 3309 3193 219 333 78 0 chr13 41017423 41017513 -78727385 - L3 LINE CR1 -84 1493 1397 219 183 7 222 chr13 41017552 41017705 -78727193 - L3 LINE CR1 -278 1299 1180 2863 6 0 0 chr13 41017765 41018076 -78726822 - AluYa5 SINE Alu 0 311 1 327 237 82 0 chr13 41018128 41018225 -78726673 + LTR50 LTR ERVL 18 122 -673 364 250 0 45 chr13 41018318 41018430 -78726468 + LTR50 LTR ERVL 367 473 -322 181 356 69 0 chr13 41018438 41018525 -78726373 + L2 LINE L2 2174 2266 -1048 217 327 97 43 chr13 41018583 41018840 -78726058 + L2 LINE L2 2418 2688 -626 2272 120 75 35 chr13 41019342 41019767 -78725131 + L1MD1 LINE L1 5801 6242 0 255 320 117 10 chr13 41021431 41021534 -78723364 + L2 LINE L2 3158 3271 -1 2253 102 17 0 chr13 41021570 41021864 -78723034 - AluSx SINE Alu -13 299 1 224 193 175 0 chr13 41022535 41022592 -78722306 - L2 LINE L2 -5 3308 3242 242 196 36 18 chr13 41022704 41022760 -78722138 - L2 LINE L2 -209 3063 3007 23 33 0 0 chr13 41023508 41023538 -78721360 + AT_rich Low_complexity Low_complexity 1 30 0 1898 112 83 0 chr13 41025779 41026055 -78718843 - AluSx SINE Alu -13 299 1 30 0 0 0 chr13 41026249 41026279 -78718619 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr13 41026740 41026789 -78718109 + AT_rich Low_complexity Low_complexity 1 49 0 539 215 19 0 chr13 41029319 41029426 -78715472 - MER5A DNA MER1_type -80 109 1 721 128 149 103 chr13 41029434 41029574 -78715324 + MER3 DNA MER1_type 1 154 -55 1513 180 18 25 chr13 41029574 41029852 -78715046 - AluJo SINE Alu -36 276 1 721 128 149 103 chr13 41029852 41029906 -78714992 + MER3 DNA MER1_type 154 204 -5 240 135 0 0 chr13 41030846 41030883 -78714015 - tRNA-Lys-AAG tRNA tRNA -37 39 3 2058 104 7 33 chr13 41031327 41031626 -78713272 - AluSx SINE Alu -21 291 1 435 209 0 0 chr13 41031952 41032057 -78712841 + (TA)n Simple_repeat Simple_repeat 2 106 0 25 31 0 0 chr13 41032121 41032153 -78712745 + AT_rich Low_complexity Low_complexity 1 32 0 35 54 0 0 chr13 41032504 41032560 -78712338 + AT_rich Low_complexity Low_complexity 1 56 0 252 300 0 0 chr13 41033602 41033692 -78711206 + A-rich Low_complexity Low_complexity 1 90 0 563 125 28 28 chr13 41033953 41034097 -78710801 + CT-rich Low_complexity Low_complexity 1 144 0 21 0 0 0 chr13 41034804 41034825 -78710073 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr13 41035254 41035287 -78709611 + AT_rich Low_complexity Low_complexity 1 33 0 6316 78 23 10 chr13 41035417 41035827 -78709071 - L1PA10 LINE L1 0 6168 5765 2157 117 0 10 chr13 41035827 41036125 -78708773 - AluSg SINE Alu -15 295 1 6316 78 23 10 chr13 41036125 41036795 -78708103 - L1PA10 LINE L1 -403 5765 5096 2301 108 0 0 chr13 41036909 41037206 -78707692 - AluSg SINE Alu -13 297 1 1729 183 0 3 chr13 41037476 41037761 -78707137 + AluJo SINE Alu 1 284 -28 26 30 0 0 chr13 41037771 41037804 -78707094 + AT_rich Low_complexity Low_complexity 1 33 0 1024 307 111 28 chr13 41037858 41038519 -78706379 - L2 LINE L2 -238 3034 2329 1830 182 46 36 chr13 41038524 41038915 -78705983 + L1PB4 LINE L1 5738 6132 -24 236 189 82 98 chr13 41038844 41038932 -78705966 + L1MA4A LINE L1 6182 6269 -34 * 1996 125 3 3 chr13 41038932 41039219 -78705679 - AluY SINE Alu -24 287 1 236 189 82 98 chr13 41039219 41039252 -78705646 + L1MA4A LINE L1 6269 6301 -2 206 219 16 0 chr13 41039839 41039903 -78704995 + (TATG)n Simple_repeat Simple_repeat 2 66 0 28 0 0 0 chr13 41040204 41040232 -78704666 + AT_rich Low_complexity Low_complexity 1 28 0 433 250 32 8 chr13 41042706 41042830 -78702068 - L1MB3 LINE L1 -9 6174 6048 2106 134 0 7 chr13 41043890 41044196 -78700702 + AluSx SINE Alu 1 304 -8 363 327 52 20 chr13 41044517 41044637 -78700261 + MIR3 SINE MIR 26 141 -67 225 0 0 0 chr13 41044637 41044662 -78700236 + (ATG)n Simple_repeat Simple_repeat 2 26 0 1951 140 0 3 chr13 41044662 41044947 -78699951 - AluSx SINE Alu -28 284 1 363 327 52 20 chr13 41044947 41044978 -78699920 + MIR3 SINE MIR 140 183 -25 23 33 0 0 chr13 41044982 41045012 -78699886 + AT_rich Low_complexity Low_complexity 1 30 0 1705 129 57 18 chr13 41045156 41045436 -78699462 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr13 41047189 41047217 -78697681 + AT_rich Low_complexity Low_complexity 1 28 0 413 283 86 20 chr13 41048633 41048785 -78696113 - MIR SINE MIR -75 187 26 187 403 52 13 chr13 41049088 41049242 -78695656 + L3 LINE CR1 67 226 -1351 * 210 340 170 23 chr13 41049231 41049578 -78695320 + L2 LINE L2 2269 2666 -648 234 318 163 50 chr13 41049617 41049979 -78694919 + L2 LINE L2 2810 3212 -60 256 221 65 39 chr13 41050564 41050641 -78694257 + L3 LINE CR1 609 687 -890 2433 119 5 30 chr13 41050685 41050981 -78693917 + THE1B LTR MaLR 3 290 -74 2217 113 0 3 chr13 41050981 41051283 -78693615 - AluSx SINE Alu -11 301 1 2433 119 5 30 chr13 41051283 41051357 -78693541 + THE1B LTR MaLR 290 364 0 298 208 115 10 chr13 41051385 41051481 -78693417 - MIR SINE MIR -70 192 87 756 166 83 2 chr13 41052318 41052532 -78692366 + AluJ SINE Alu 44 306 -6 1882 143 29 76 chr13 41052653 41053073 -78691825 + L1MC2 LINE L1 5928 6327 -17 37 23 0 0 chr13 41053823 41053867 -78691031 + AT_rich Low_complexity Low_complexity 1 44 0 337 228 323 6 chr13 41054543 41054710 -78690188 + MIR SINE MIR 43 262 0 189 0 0 0 chr13 41054982 41055003 -78689895 + (TA)n Simple_repeat Simple_repeat 2 22 0 2039 136 0 3 chr13 41055208 41055494 -78689404 + AluSx SINE Alu 1 285 -27 408 40 0 0 chr13 41055494 41055544 -78689354 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 1232 84 11 0 chr13 41055545 41055723 -78689175 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1824 176 92 36 chr13 41055745 41056223 -78688675 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr13 41056810 41056832 -78688066 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr13 41057609 41057649 -78687249 + AT_rich Low_complexity Low_complexity 1 40 0 308 143 0 0 chr13 41058349 41058398 -78686500 + L2 LINE L2 3265 3313 0 25 31 0 0 chr13 41058528 41058560 -78686338 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr13 41058798 41058819 -78686079 + AT_rich Low_complexity Low_complexity 1 21 0 983 183 0 11 chr13 41058838 41059013 -78685885 - FRAM SINE Alu -4 172 1 354 206 227 14 chr13 41059155 41059296 -78685602 + MIR SINE MIR 48 218 -44 349 180 279 9 chr13 41059360 41059471 -78685427 + MIR SINE MIR 48 188 -74 26 50 0 0 chr13 41059572 41059612 -78685286 + AT_rich Low_complexity Low_complexity 1 40 0 215 269 26 0 chr13 41060500 41060578 -78684320 + T-rich Low_complexity Low_complexity 5 84 0 1657 207 84 22 chr13 41060626 41061090 -78683808 + Charlie4a DNA MER1_type 12 504 -4 2022 115 0 4 chr13 41061410 41061715 -78683183 + AluSc SINE Alu 3 306 0 1050 154 6 11 chr13 41064961 41065136 -78679762 - AluJb SINE Alu -2 310 137 2247 114 13 0 chr13 41065419 41065727 -78679171 - AluSx SINE Alu 0 312 1 4149 190 48 14 chr13 41065889 41066975 -78677923 - L1MB7 LINE L1 -9 6175 5043 382 258 21 10 chr13 41067082 41067179 -78677719 + MER5A DNA MER1_type 38 135 -54 1929 149 0 10 chr13 41067179 41067480 -78677418 - AluSg SINE Alu -12 298 1 254 261 72 0 chr13 41068231 41068266 -78676632 + AluJb SINE Alu 96 135 -167 1784 159 25 0 chr13 41068266 41068542 -78676356 + AluJo SINE Alu 1 283 -29 593 285 117 37 chr13 41069424 41069722 -78675176 + L3 LINE CR1 519 840 -737 303 283 99 76 chr13 41069808 41070031 -78674867 + L3 LINE CR1 1055 1282 -295 556 153 7 29 chr13 41070033 41070170 -78674728 + GA-rich Low_complexity Low_complexity 2 135 0 387 253 158 41 chr13 41070301 41070522 -78674376 + L3 LINE CR1 1320 1566 -11 696 250 52 0 chr13 41070632 41070804 -78674094 - MIR SINE MIR -28 234 54 1055 131 47 11 chr13 41071181 41071372 -78673526 - L1PA16 LINE L1 0 6166 5969 1935 145 0 3 chr13 41072731 41073020 -78671878 + AluJb SINE Alu 1 288 -24 22 0 0 0 chr13 41073276 41073298 -78671600 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 41073926 41073947 -78670951 + AT_rich Low_complexity Low_complexity 1 21 0 2126 124 3 0 chr13 41075023 41075313 -78669585 + AluSx SINE Alu 1 291 -21 375 23 0 0 chr13 41076644 41076688 -78668210 + (CA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr13 41077801 41077823 -78667075 + AT_rich Low_complexity Low_complexity 1 22 0 1398 204 10 31 chr13 41077825 41078119 -78666779 - AluJo SINE Alu -14 288 1 1041 284 99 2 chr13 41078136 41078541 -78666357 - Tigger8 DNA MER2_type -177 489 46 361 255 92 21 chr13 41078542 41078683 -78666215 + MIR3 SINE MIR 55 205 -3 1969 171 0 0 chr13 41079398 41079690 -78665208 - AluJb SINE Alu -18 294 3 24 53 0 0 chr13 41079887 41079925 -78664973 + AT_rich Low_complexity Low_complexity 1 38 0 213 225 0 0 chr13 41079928 41079968 -78664930 + (CA)n Simple_repeat Simple_repeat 1 40 0 1922 155 30 6 chr13 41079968 41080303 -78664595 - MER2 DNA MER2_type 0 344 2 403 256 127 71 chr13 41080523 41080957 -78663941 + L1M2 LINE L1 417 1396 -5453 2659 36 0 3 chr13 41081395 41081704 -78663194 - AluY SINE Alu -3 308 1 1882 148 0 26 chr13 41082902 41083206 -78661692 - AluJb SINE Alu -14 298 3 1936 252 105 28 chr13 41084823 41085641 -78659257 + L1ME2 LINE L1 5265 6145 -19 233 271 113 18 chr13 41086679 41086818 -78658080 - MIR SINE MIR 0 262 72 390 145 48 0 chr13 41087326 41087409 -78657489 + L1ME4a LINE L1 5997 6083 -38 915 187 0 23 chr13 41087829 41088000 -78656898 + AluJb SINE Alu 137 303 -9 339 85 0 0 chr13 41088710 41088757 -78656141 + (CA)n Simple_repeat Simple_repeat 2 48 0 302 278 70 17 chr13 41088959 41089074 -78655824 + MER112 DNA MER1_type 128 248 -12 1902 159 3 0 chr13 41089428 41089724 -78655174 + AluJb SINE Alu 1 297 -15 2147 119 0 3 chr13 41089724 41090017 -78654881 + AluSq SINE Alu 1 292 -21 1856 87 28 32 chr13 41090316 41090569 -78654329 + AluSc SINE Alu 36 287 -22 2571 53 3 0 chr13 41090571 41090874 -78654024 + AluY SINE Alu 1 304 -7 182 313 199 46 chr13 41090900 41091031 -78653867 - L2 LINE L2 0 3272 3122 342 264 72 77 chr13 41091360 41091568 -78653330 + MIR SINE MIR 22 228 -34 2379 87 0 0 chr13 41091739 41092038 -78652860 - AluSx SINE Alu -13 299 1 186 43 0 0 chr13 41092251 41092274 -78652624 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 852 206 0 0 chr13 41092278 41092433 -78652465 - AluJb SINE Alu -22 290 136 559 41 165 10 chr13 41092659 41092756 -78652142 - L1MA9 LINE L1 -17 6295 6184 413 238 16 97 chr13 41093659 41093844 -78651054 - L2 LINE L2 0 3313 3144 428 267 9 9 chr13 41096631 41096736 -78648162 + MER2 DNA MER2_type 1 105 -240 256 256 12 24 chr13 41097628 41097710 -78647188 + GA-rich Low_complexity Low_complexity 1 81 0 7638 27 1 0 chr13 41098626 41099837 -78645061 + L1PA3 LINE L1 4944 6155 0 2089 121 0 0 chr13 41099878 41100159 -78644739 - AluSq SINE Alu -14 299 19 2135 131 0 7 chr13 41100164 41100470 -78644428 - AluSq SINE Alu -9 304 1 2345 90 3 6 chr13 41100888 41101199 -78643699 - AluY SINE Alu -1 310 1 1117 61 0 0 chr13 41101201 41101332 -78643566 - AluY SINE Alu -180 131 1 490 250 17 0 chr13 41103774 41103890 -78641008 + L1ME3A LINE L1 6035 6152 -18 1918 132 3 14 chr13 41104640 41104959 -78639939 + AluSx SINE Alu 1 316 0 598 63 0 0 chr13 41105114 41105193 -78639705 - AluS SINE Alu -234 79 1 27 0 0 0 chr13 41105308 41105335 -78639563 + AT_rich Low_complexity Low_complexity 1 27 0 493 328 81 0 chr13 41105686 41105872 -78639026 - MIR SINE MIR -57 205 5 1454 156 27 19 chr13 41106194 41106451 -78638447 + AluJo SINE Alu 37 295 -17 22 0 0 0 chr13 41107756 41107778 -78637120 + AT_rich Low_complexity Low_complexity 1 22 0 1076 60 0 0 chr13 41107806 41107940 -78636958 - AluSc SINE Alu -175 134 1 554 224 29 46 chr13 41109750 41109924 -78634974 + LTR1B LTR ERV1 650 820 -6 434 204 10 0 chr13 41110172 41110275 -78634623 + (TA)n Simple_repeat Simple_repeat 1 104 0 582 186 2 1 chr13 41110437 41110551 -78634347 - MLT1D LTR MaLR 0 505 251 3048 105 34 16 chr13 41110553 41111047 -78633851 + L1PB4 LINE L1 5289 5791 -365 243 95 0 5 chr13 41111045 41111084 -78633814 - L1P5 LINE L1 -322 5829 5790 * 324 0 0 0 chr13 41111084 41111120 -78633778 + (TG)n Simple_repeat Simple_repeat 2 37 0 2098 127 43 32 chr13 41111175 41111192 -78633706 + L1PB4 LINE L1 5782 5797 -359 252 0 0 0 chr13 41111192 41111220 -78633678 + (CA)n Simple_repeat Simple_repeat 2 29 0 2098 127 43 32 chr13 41111220 41111573 -78633325 + L1PB4 LINE L1 5797 6156 0 1410 180 129 42 chr13 41111574 41111930 -78632968 - MLT1D LTR MaLR -118 387 1 312 286 95 24 chr13 41113136 41113262 -78631636 - L2 LINE L2 -1 3271 3137 1528 185 66 0 chr13 41113470 41113757 -78631141 + AluJo SINE Alu 1 306 -6 216 200 22 0 chr13 41114494 41114539 -78630359 - MIR SINE MIR -132 130 85 614 270 57 20 chr13 41116006 41116254 -78628644 - L1MC4a LINE L1 -1884 5924 5668 2086 130 16 0 chr13 41117987 41118294 -78626604 - AluSx SINE Alu 0 312 1 600 13 0 0 chr13 41118693 41118772 -78626126 - L1PA4 LINE L1 -3010 3136 3058 18477 35 39 1 chr13 41118770 41121766 -78623132 + L1PA4 LINE L1 3123 6153 -2 40 0 0 0 chr13 41121766 41121806 -78623092 + AT_rich Low_complexity Low_complexity 1 40 0 295 280 0 43 chr13 41122923 41123016 -78621882 + L2 LINE L2 3225 3313 0 22 56 0 0 chr13 41123861 41123897 -78621001 + AT_rich Low_complexity Low_complexity 1 36 0 472 219 53 18 chr13 41124193 41124307 -78620591 - L2 LINE L2 -1 3271 3154 209 313 172 16 chr13 41124495 41124623 -78620275 + MIR3 SINE MIR 37 184 -24 748 307 100 24 chr13 41124640 41125021 -78619877 - L3 LINE CR1 -119 1458 1049 438 305 127 20 chr13 41125154 41125351 -78619547 + MIR SINE MIR 2 219 -43 714 274 11 16 chr13 41126558 41126748 -78618150 - MIR SINE MIR -62 200 12 21 0 0 0 chr13 41127152 41127173 -78617725 + AT_rich Low_complexity Low_complexity 1 21 0 1990 134 31 0 chr13 41127190 41127482 -78617416 - AluJb SINE Alu -11 301 1 1714 136 96 0 chr13 41127705 41127977 -78616921 - AluSx SINE Alu -13 299 2 964 120 15 0 chr13 41127978 41128111 -78616787 - AluSq/x SINE Alu -177 135 1 516 159 119 32 chr13 41128129 41128255 -78616643 + MLT1E3 LTR MaLR 486 622 -2 323 201 43 95 chr13 41128352 41128511 -78616387 + MLT1H1 LTR MaLR 1 157 -398 1859 160 6 13 chr13 41128975 41129287 -78615611 - AluJo SINE Alu -2 310 1 187 85 43 21 chr13 41129487 41129514 -78615384 + A-rich Low_complexity Low_complexity 5 30 -22 2279 97 0 10 chr13 41129514 41129812 -78615086 - AluY SINE Alu -16 295 1 1589 143 120 0 chr13 41129821 41130079 -78614819 - AluJo SINE Alu -23 289 1 1664 121 8 0 chr13 41130292 41130557 -78614341 + L1MA5A LINE L1 6028 6294 -3 184 281 0 18 chr13 41131141 41131198 -78613700 + L2 LINE L2 1358 1413 -1901 756 295 108 52 chr13 41131244 41131882 -78613016 + L2 LINE L2 1514 2187 -1127 206 265 0 0 chr13 41132273 41132322 -78612576 + L2 LINE L2 3264 3312 -1 26 30 0 0 chr13 41132842 41132875 -78612023 + AT_rich Low_complexity Low_complexity 1 33 0 196 167 24 0 chr13 41133569 41133611 -78611287 + MIR SINE MIR 96 138 -124 22 35 0 0 chr13 41134380 41134409 -78610489 + AT_rich Low_complexity Low_complexity 1 29 0 195 270 14 40 chr13 41134585 41134659 -78610239 - MIR SINE MIR -20 242 171 189 0 0 0 chr13 41134754 41134775 -78610123 + (TC)n Simple_repeat Simple_repeat 1 21 0 1047 229 47 20 chr13 41135547 41135800 -78609098 + MIR SINE MIR 2 261 -1 236 318 129 47 chr13 41135840 41136095 -78608803 - L2 LINE L2 -181 3091 2816 417 237 182 67 chr13 41136174 41136520 -78608378 + L2 LINE L2 2826 3211 -102 203 250 0 21 chr13 41136790 41136838 -78608060 + L2 LINE L2 3231 3277 -36 602 292 44 22 chr13 41137128 41137354 -78607544 + MIR SINE MIR 20 250 -12 183 139 28 0 chr13 41137639 41137675 -78607223 + MER5B DNA MER1_type 142 178 0 490 285 91 0 chr13 41138650 41138836 -78606062 - L1ME1 LINE L1 -5 6161 5959 1201 222 43 6 chr13 41138841 41139294 -78605604 - L1ME1 LINE L1 -648 5518 5049 2378 146 33 24 chr13 41140022 41140441 -78604457 + MSTC LTR MaLR 4 426 -2 2067 147 34 3 chr13 41141224 41141578 -78603320 - MER47A DNA MER2_type 0 366 2 362 74 19 0 chr13 41141578 41141632 -78603266 + (TG)n Simple_repeat Simple_repeat 2 56 0 392 135 27 0 chr13 41142927 41143001 -78601897 + L1MB2 LINE L1 6071 6146 -25 23 78 0 0 chr13 41143001 41143052 -78601846 + AT_rich Low_complexity Low_complexity 1 51 0 2379 62 0 0 chr13 41144472 41144763 -78600135 - AluY SINE Alu -20 291 1 224 319 149 0 chr13 41144989 41145083 -78599815 - L2 LINE L2 -13 3259 3152 189 356 111 36 chr13 41146738 41147126 -78597772 + L2 LINE L2 2543 2959 -355 191 422 73 0 chr13 41147285 41147394 -78597504 + L2 LINE L2 3140 3256 -16 354 256 22 0 chr13 41147579 41147669 -78597229 + MIR SINE MIR 48 139 -123 22 0 0 0 chr13 41147975 41147997 -78596901 + AT_rich Low_complexity Low_complexity 1 22 0 202 250 76 43 chr13 41148089 41148181 -78596717 + L2 LINE L2 2289 2383 -931 * 499 300 7 14 chr13 41148156 41148296 -78596602 + L2 LINE L2 3134 3272 0 249 309 211 8 chr13 41149251 41149374 -78595524 - MER5B DNA MER1_type 0 178 31 1033 143 12 0 chr13 41150253 41150414 -78594484 + FRAM SINE Alu 1 163 -13 2175 94 10 0 chr13 41151112 41151400 -78593498 - AluSx SINE Alu -21 291 1 1371 48 0 0 chr13 41151626 41151792 -78593106 - L1PA10 LINE L1 -1 6167 6002 204 40 0 0 chr13 41152086 41152111 -78592787 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 223 85 43 21 chr13 41152702 41152749 -78592149 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 321 140 0 0 chr13 41153003 41153060 -78591838 + (CA)n Simple_repeat Simple_repeat 2 58 0 811 255 45 10 chr13 41153292 41153492 -78591406 + MIR SINE MIR 43 249 -13 213 353 57 25 chr13 41153523 41153645 -78591253 + L2 LINE L2 3143 3268 -4 186 338 41 35 chr13 41153955 41154100 -78590798 + L2 LINE L2 2196 2341 -973 274 388 0 20 chr13 41154129 41154227 -78590671 + MIR3 SINE MIR 10 105 -103 303 290 24 93 chr13 41155175 41155423 -78589475 + L2 LINE L2 2708 2938 -376 2098 120 3 10 chr13 41155637 41155937 -78588961 - AluSg SINE Alu -12 298 1 2320 110 0 7 chr13 41156391 41156701 -78588197 + AluSx SINE Alu 1 308 -4 471 227 31 23 chr13 41156775 41156903 -78587995 - L2 LINE L2 0 3313 3185 1949 178 28 38 chr13 41157229 41157629 -78587269 + MSTD LTR MaLR 1 396 0 294 125 0 0 chr13 41157650 41157698 -78587200 + (CATA)n Simple_repeat Simple_repeat 4 51 0 295 273 64 14 chr13 41157972 41158126 -78586772 + MLT1J LTR MaLR 1 194 -294 583 267 54 67 chr13 41158216 41158587 -78586311 + MLT1J2 LTR MaLR 64 429 -21 346 241 0 23 chr13 41158613 41158700 -78586198 + MLT1J LTR MaLR 376 460 -51 584 248 17 84 chr13 41158831 41159069 -78585829 + MLT1L LTR MaLR 23 244 -371 267 31 0 0 chr13 41160894 41160926 -78583972 + (TC)n Simple_repeat Simple_repeat 1 32 0 1040 194 40 0 chr13 41161124 41161325 -78583573 + MER3 DNA MER1_type 1 209 0 274 212 271 0 chr13 41161721 41161806 -78583092 - MIR SINE MIR -67 141 34 3633 110 25 11 chr13 41162175 41162695 -78582203 - MER1A DNA MER1_type 0 527 1 314 244 44 22 chr13 41162981 41163071 -78581827 + L2 LINE L2 3220 3311 -2 192 291 36 18 chr13 41163349 41163404 -78581494 + L2 LINE L2 3248 3303 -10 2161 124 0 3 chr13 41164196 41164495 -78580403 - AluSx SINE Alu -14 298 1 25 31 0 0 chr13 41164495 41164527 -78580371 + AT_rich Low_complexity Low_complexity 1 32 0 1320 265 83 52 chr13 41164614 41165323 -78579575 + HAL1 LINE L1 78 808 -1699 1104 233 114 26 chr13 41165352 41165815 -78579083 + HAL1 LINE L1 1148 1651 -856 2898 104 32 2 chr13 41166172 41166604 -78578294 + L1PA16 LINE L1 5719 6163 -3 2312 111 0 0 chr13 41167236 41167542 -78577356 + AluSx SINE Alu 1 306 -6 183 133 33 0 chr13 41167548 41167578 -78577320 - L2 LINE L2 -16 3256 3226 1843 36 0 0 chr13 41168420 41168641 -78576257 - L1PA4 LINE L1 -3 6152 5932 4177 159 23 24 chr13 41168670 41169439 -78575459 - L1MB2 LINE L1 0 6240 5471 1982 154 0 3 chr13 41169439 41169738 -78575160 - AluJb SINE Alu -14 298 1 4177 159 23 24 chr13 41169738 41169787 -78575111 - L1MB2 LINE L1 -769 5471 5423 4311 152 22 25 chr13 41169804 41170657 -78574241 - L1MA4 LINE L1 -5 6295 5445 677 117 9 9 chr13 41170657 41170768 -78574130 + L1M1 LINE L1 5524 5634 -666 * 1680 106 14 0 chr13 41170765 41171154 -78573744 - L1M1 LINE L1 -743 5403 5107 3377 211 55 30 chr13 41171164 41171582 -78573316 - L1MB2 LINE L1 -777 5438 5032 1451 184 13 93 chr13 41171582 41171979 -78572919 - MLT1A1 LTR MaLR 0 365 1 3377 211 55 30 chr13 41171979 41172524 -78572374 - L1MB2 LINE L1 -1183 5032 4451 416 181 128 0 chr13 41172526 41172620 -78572278 - HERVL40 LTR ERVL -929 4601 4496 5657 250 66 29 chr13 41172638 41172820 -78572078 - L1MB2 LINE L1 -3211 3004 2830 2050 207 35 41 chr13 41172820 41173328 -78571570 + MLT1D LTR MaLR 1 505 0 5657 250 66 29 chr13 41173328 41175614 -78569284 - L1MB2 LINE L1 -3385 2830 442 360 0 0 0 chr13 41175614 41175654 -78569244 + (TG)n Simple_repeat Simple_repeat 2 41 0 5657 250 66 29 chr13 41175654 41176087 -78568811 - L1MB2 LINE L1 -5773 442 27 1888 156 10 0 chr13 41176482 41176771 -78568127 + AluSx SINE Alu 2 293 -19 22 35 0 0 chr13 41177596 41177625 -78567273 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr13 41178434 41178473 -78566425 + AT_rich Low_complexity Low_complexity 1 39 0 1918 237 58 45 chr13 41180616 41181169 -78563729 + L1MC4a LINE L1 6441 7006 -802 2065 145 0 0 chr13 41181169 41181465 -78563433 + AluSx SINE Alu 1 296 -16 1918 237 58 45 chr13 41181465 41181578 -78563320 + L1MC4a LINE L1 7006 7116 -692 282 187 80 13 chr13 41181705 41181780 -78563118 + MIR SINE MIR 65 144 -64 991 226 126 12 chr13 41182593 41183076 -78561822 + HAL1b LINE L1 322 884 -464 750 257 15 0 chr13 41183201 41183394 -78561504 + L1PB4 LINE L1 5963 6295 -10 21 0 0 0 chr13 41183399 41183420 -78561478 + AT_rich Low_complexity Low_complexity 1 21 0 2219 88 16 16 chr13 41183483 41183789 -78561109 + AluSx SINE Alu 1 306 -6 427 169 0 12 chr13 41183918 41184001 -78560897 + HAL1b LINE L1 1186 1267 -81 239 209 105 23 chr13 41184102 41184188 -78560710 + MLT1J LTR MaLR 79 171 -340 * 306 229 114 57 chr13 41184118 41184223 -78560675 + MLT2E LTR ERVL 32 142 -486 233 269 26 13 chr13 41184468 41184546 -78560352 + LTR33A LTR ERVL 445 523 0 243 348 56 0 chr13 41184763 41184852 -78560046 - L2 LINE L2 -612 2702 2609 293 333 68 0 chr13 41187567 41187684 -78557214 - MIR SINE MIR -66 196 72 459 78 0 0 chr13 41187995 41188059 -78556839 + (TGGA)n Simple_repeat Simple_repeat 2 65 0 21 0 0 0 chr13 41188577 41188598 -78556300 + AT_rich Low_complexity Low_complexity 1 21 0 204 241 37 0 chr13 41188836 41188890 -78556008 + L2 LINE L2 3007 3062 -210 2175 164 6 3 chr13 41188968 41189333 -78555565 - MER47A DNA MER2_type 0 366 1 840 276 17 27 chr13 41189613 41189910 -78554988 - L2 LINE L2 -5 3308 3015 765 261 59 32 chr13 41190240 41190493 -78554405 - MIR SINE MIR -1 261 2 27 49 0 0 chr13 41194453 41194494 -78550404 + AT_rich Low_complexity Low_complexity 1 41 0 198 0 0 0 chr13 41194987 41195009 -78549889 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 973 207 5 20 chr13 41195483 41195686 -78549212 + MER82 DNA MER2_type 5 204 -449 1851 197 103 7 chr13 41195779 41196186 -78548712 + MER82 DNA MER2_type 206 651 -2 894 144 7 20 chr13 41196327 41196480 -78548418 - L1MB3 LINE L1 -348 5835 5685 2063 112 14 7 chr13 41196504 41196790 -78548108 + AluSx SINE Alu 1 288 -24 323 209 302 8 chr13 41197621 41197750 -78547148 - MIR SINE MIR -5 257 91 1309 255 79 77 chr13 41198087 41198750 -78546148 + L2 LINE L2 995 1662 -1652 2280 89 3 0 chr13 41198750 41199042 -78545856 - AluSp SINE Alu -20 293 1 1309 255 79 77 chr13 41199042 41199146 -78545752 + L2 LINE L2 1662 1764 -1550 260 264 0 0 chr13 41199228 41199281 -78545617 - MIR SINE MIR -1 261 209 412 266 30 75 chr13 41199312 41199511 -78545387 + L2 LINE L2 2813 3002 -311 305 246 0 0 chr13 41199558 41199619 -78545279 + Charlie1 DNA MER1_type 38 98 -2663 710 307 117 21 chr13 41200564 41200689 -78544209 + L2 LINE L2 2953 3065 -248 273 29 0 0 chr13 41200689 41200723 -78544175 + (CA)n Simple_repeat Simple_repeat 2 35 0 710 307 117 21 chr13 41200723 41200923 -78543975 + L2 LINE L2 3065 3309 -4 4134 115 48 0 chr13 41201204 41201788 -78543110 + LTR9 LTR ERV1 1 612 0 2008 134 7 3 chr13 41202182 41202473 -78542425 + AluSx SINE Alu 1 292 -20 294 348 27 0 chr13 41202968 41203080 -78541818 - L2 LINE L2 0 3313 3199 711 144 150 40 chr13 41203117 41203299 -78541599 - THE1C LTR MaLR 0 375 185 2336 105 0 0 chr13 41203300 41203604 -78541294 - AluSx SINE Alu -8 304 1 845 282 64 23 chr13 41203604 41204001 -78540897 - L2 LINE L2 -164 3149 2729 772 283 134 19 chr13 41204021 41204496 -78540402 - L1ME LINE L1 -398 5764 5236 1716 211 98 25 chr13 41204498 41204938 -78539960 - MLT1D LTR MaLR 0 505 34 243 206 0 48 chr13 41204938 41205001 -78539897 - L1MC5 LINE L1 -75 7886 7827 253 200 0 0 chr13 41205041 41205091 -78539807 - L1ME3 LINE L1 0 6162 6113 2369 211 90 38 chr13 41205093 41205758 -78539140 - L1ME1 LINE L1 -107 6059 5360 43094 30 21 1 chr13 41205820 41211851 -78533047 - L1PA2 LINE L1 0 6155 1 408 188 47 16 chr13 41211852 41211980 -78532918 - L1ME1 LINE L1 -864 5282 5151 2488 224 18 18 chr13 41211981 41212578 -78532320 - L1ME1 LINE L1 -2 6164 5568 1134 205 95 79 chr13 41212580 41212946 -78531952 - MLT1C LTR MaLR -103 364 1 462 253 57 50 chr13 41213007 41213288 -78531610 - L1MEd LINE L1 -4896 1223 941 198 324 29 29 chr13 41213476 41213612 -78531286 + L2 LINE L2 1964 2099 -1215 597 279 30 6 chr13 41214230 41214395 -78530503 - MIR SINE MIR 0 262 94 888 173 56 0 chr13 41214484 41214663 -78530235 - MER53 DNA DNA 0 189 1 1716 131 92 3 chr13 41214721 41215003 -78529895 + AluSx SINE Alu 1 307 -5 1042 201 11 0 chr13 41215305 41215494 -78529404 - MER20 DNA MER1_type -28 191 1 819 293 58 8 chr13 41216491 41216733 -78528165 - MIR SINE MIR -3 259 6 289 324 156 15 chr13 41216801 41217134 -78527764 - L2 LINE L2 -595 2719 2340 536 264 96 30 chr13 41218006 41218203 -78526695 - MIR SINE MIR -31 231 22 833 119 16 8 chr13 41219180 41219306 -78525592 + AluJb SINE Alu 1 127 -185 65 0 0 0 chr13 41219306 41219371 -78525527 + AT_rich Low_complexity Low_complexity 1 65 0 1020 172 18 0 chr13 41219371 41219540 -78525358 + AluJb SINE Alu 130 301 -11 2192 163 116 15 chr13 41219579 41220038 -78524860 - MLT1D LTR MaLR 0 505 1 2510 58 0 0 chr13 41220045 41220338 -78524560 - AluY SINE Alu -18 293 1 225 0 0 0 chr13 41220406 41220431 -78524467 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1447 167 144 20 chr13 41220722 41221028 -78523870 - MER2 DNA MER2_type 0 344 1 745 256 56 64 chr13 41221863 41221938 -78522960 - MIR SINE MIR 0 262 188 2173 201 56 63 chr13 41221938 41222494 -78522404 + MLT2B3 LTR ERVL 1 552 -2 745 256 56 64 chr13 41222494 41222668 -78522230 - MIR SINE MIR -74 188 15 393 22 0 0 chr13 41224149 41224195 -78520703 + (TG)n Simple_repeat Simple_repeat 1 46 0 2433 187 72 36 chr13 41225127 41225624 -78519274 + MLT2B2 LTR ERVL 1 515 0 380 321 112 5 chr13 41225950 41226137 -78518761 + MIR SINE MIR 48 254 -8 249 197 0 0 chr13 41226411 41226487 -78518411 + (TG)n Simple_repeat Simple_repeat 2 77 0 853 186 0 51 chr13 41227403 41227580 -78517318 + MER5A DNA MER1_type 1 168 -21 1401 189 129 30 chr13 41227740 41228143 -78516755 - HsTC2 DNA Tc2 0 1900 1282 226 319 49 92 chr13 41228374 41228722 -78516176 - L2 LINE L2 -832 2482 2150 294 262 87 32 chr13 41228902 41229028 -78515870 - L2 LINE L2 -1270 2044 1912 337 344 8 30 chr13 41229058 41229189 -78515709 - MIR SINE MIR -62 146 19 1783 186 43 55 chr13 41229269 41229614 -78515284 - MSTD LTR MaLR -2 394 53 2438 77 0 3 chr13 41229614 41229913 -78514985 - AluSq SINE Alu -15 298 1 1783 186 43 55 chr13 41229913 41229966 -78514932 - MSTD LTR MaLR -343 53 1 182 169 17 119 chr13 41230418 41230434 -78514464 + MER5A DNA MER1_type 2 11 -178 251 246 48 119 chr13 41230434 41230560 -78514338 - MER5A DNA MER1_type 0 189 73 487 250 29 43 chr13 41231477 41231562 -78513336 + MIR3 SINE MIR 68 152 -56 1769 172 3 23 chr13 41231562 41231870 -78513028 + AluJb SINE Alu 1 302 -10 487 250 29 43 chr13 41231870 41231924 -78512974 + MIR3 SINE MIR 152 205 -3 311 256 88 24 chr13 41232202 41232269 -78512629 + MER103 DNA DNA 14 88 -78 1019 175 40 0 chr13 41232269 41232446 -78512452 + MER3 DNA MER1_type 3 186 -23 352 231 67 39 chr13 41232948 41233052 -78511846 - MIR SINE MIR -78 184 78 238 194 15 30 chr13 41234441 41234508 -78510390 + MER5A DNA MER1_type 124 189 0 245 380 26 0 chr13 41234521 41234634 -78510264 + MIR SINE MIR 26 141 -67 559 298 12 29 chr13 41234650 41234821 -78510077 - MIR SINE MIR -80 182 15 207 200 0 0 chr13 41235521 41235566 -78509332 + (TA)n Simple_repeat Simple_repeat 1 45 0 273 326 72 43 chr13 41235713 41235851 -78509047 + L3 LINE CR1 1429 1570 -7 597 303 75 34 chr13 41235861 41236155 -78508743 - L3 LINE CR1 -355 1222 917 279 79 0 0 chr13 41236683 41236721 -78508177 + (CA)n Simple_repeat Simple_repeat 1 38 0 351 337 92 5 chr13 41238452 41238636 -78506262 + MIR SINE MIR 56 255 -7 207 69 0 0 chr13 41240373 41240402 -78504496 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 690 215 0 0 chr13 41240414 41240535 -78504363 - FLAM_C SINE Alu -21 122 2 21 0 0 0 chr13 41240538 41240559 -78504339 + AT_rich Low_complexity Low_complexity 1 21 0 491 297 61 12 chr13 41242603 41242768 -78502130 - MLT1K LTR MaLR -7 581 409 317 243 179 7 chr13 41242799 41242939 -78501959 - MLT1K LTR MaLR -269 319 156 195 270 203 0 chr13 41243901 41243975 -78500923 - L2 LINE L2 -11 3261 3173 437 312 60 36 chr13 41244848 41245358 -78499540 + L1MEd LINE L1 1026 1665 -825 2174 108 10 0 chr13 41246081 41246369 -78498529 + AluSx SINE Alu 1 291 -21 192 355 214 0 chr13 41246403 41246623 -78498275 - L2 LINE L2 -1158 2156 1890 570 176 54 38 chr13 41246812 41247054 -78497844 + L1MA9 LINE L1 5783 6020 -292 1510 165 111 7 chr13 41247054 41247168 -78497730 + AluJo SINE Alu 1 102 -210 333 0 0 0 chr13 41247168 41247205 -78497693 + (CA)n Simple_repeat Simple_repeat 2 38 0 1510 165 111 7 chr13 41247205 41247369 -78497529 + AluJo SINE Alu 102 308 -4 570 176 54 38 chr13 41247369 41247493 -78497405 + L1MA9 LINE L1 6020 6288 -24 216 0 0 0 chr13 41249724 41249748 -78495150 + (A)n Simple_repeat Simple_repeat 1 24 0 1893 124 0 70 chr13 41250009 41250339 -78494559 - AluJo SINE Alu -2 310 4 395 278 192 0 chr13 41250352 41250503 -78494395 + MER5A DNA MER1_type 4 183 -6 232 263 13 53 chr13 41250441 41250517 -78494381 - MER5A DNA MER1_type -109 80 8 * 240 250 152 36 chr13 41250704 41250816 -78494082 + MER5B DNA MER1_type 54 178 0 212 245 11 117 chr13 41250736 41250830 -78494068 - L3 LINE CR1 -79 1498 1415 * 430 277 21 0 chr13 41251357 41251451 -78493447 - L2 LINE L2 -40 3232 3137 180 111 0 0 chr13 41251892 41251919 -78492979 + (CA)n Simple_repeat Simple_repeat 2 28 0 632 241 79 15 chr13 41252511 41252714 -78492184 - L1MC5 LINE L1 -50 7911 7696 884 213 46 37 chr13 41256539 41256755 -78488143 - MER20 DNA MER1_type -1 218 1 466 288 124 33 chr13 41256946 41256999 -78487899 + L2 LINE L2 2605 2652 -662 2309 140 6 105 chr13 41256999 41257477 -78487421 + MSTB1 LTR MaLR 2 432 0 466 288 124 33 chr13 41257477 41257753 -78487145 + L2 LINE L2 2652 2964 -350 3136 168 39 8 chr13 41259269 41259854 -78485044 - L1MB3 LINE L1 -2 6181 5579 1477 200 43 7 chr13 41259867 41260147 -78484751 - AluJo SINE Alu -22 290 1 226 203 68 17 chr13 41260321 41260380 -78484518 - L2 LINE L2 -26 3287 3226 267 143 243 29 chr13 41260547 41260617 -78484281 - MIR SINE MIR -70 192 108 553 304 62 27 chr13 41261223 41261447 -78483451 - MIR SINE MIR -16 246 15 6399 148 24 25 chr13 41261705 41262915 -78481983 - L1MC1 LINE L1 -1 6612 5403 562 167 21 130 chr13 41262939 41263184 -78481714 - MLT1C LTR MaLR -46 421 157 1202 140 11 0 chr13 41263187 41263373 -78481525 - L1PA13 LINE L1 -11 6152 5965 5169 230 16 19 chr13 41263385 41264700 -78480198 - L1MC1 LINE L1 -1036 5390 4080 5600 168 29 38 chr13 41264704 41265541 -78479357 - L1MC1 LINE L1 -4554 2053 1045 1620 168 4 0 chr13 41265541 41265809 -78479089 - L1MB1 LINE L1 -1 6167 5899 5600 168 29 38 chr13 41265809 41266263 -78478635 - L1MC1 LINE L1 -5562 1045 588 4767 117 3 18 chr13 41266367 41267076 -78477822 - L1P3 LINE L1 -5761 700 3 346 255 93 47 chr13 41267170 41267382 -78477516 + L1ME4a LINE L1 5831 6060 -61 1888 134 79 0 chr13 41267382 41267672 -78477226 - AluSq SINE Alu 0 313 1 346 255 93 47 chr13 41267672 41267737 -78477161 + L1ME4a LINE L1 6060 6121 0 180 0 0 0 chr13 41267749 41267769 -78477129 + (T)n Simple_repeat Simple_repeat 1 20 0 2084 138 0 0 chr13 41269184 41269482 -78475416 - AluSx SINE Alu -14 298 1 265 267 17 0 chr13 41270224 41270284 -78474614 - MIR SINE MIR -201 61 1 245 278 0 14 chr13 41270287 41270359 -78474539 + GA-rich Low_complexity Low_complexity 2 72 0 265 349 161 20 chr13 41270457 41270755 -78474143 - L2 LINE L2 -3 3269 2930 203 293 53 0 chr13 41270754 41270829 -78474069 + MIR SINE MIR 158 236 -26 * 1562 198 0 29 chr13 41270941 41271254 -78473644 - AluJo SINE Alu -4 308 5 264 273 0 40 chr13 41273178 41273277 -78471621 + GA-rich Low_complexity Low_complexity 3 97 0 407 234 76 57 chr13 41273967 41274125 -78470773 - MIR SINE MIR -71 191 31 303 28 0 0 chr13 41274168 41274204 -78470694 + (TTG)n Simple_repeat Simple_repeat 2 37 0 352 311 31 19 chr13 41274649 41274810 -78470088 + MLT1H LTR MaLR 117 279 -270 700 281 181 16 chr13 41275284 41275404 -78469494 + HAL1 LINE L1 1543 1642 -865 17051 99 2 1 chr13 41275404 41277531 -78467367 + L1PA7 LINE L1 2963 5040 -1114 2312 100 0 0 chr13 41277531 41277832 -78467066 + AluY SINE Alu 1 301 -10 17051 99 2 1 chr13 41277832 41278945 -78465953 + L1PA7 LINE L1 5040 6150 -4 700 281 181 16 chr13 41278945 41279144 -78465754 + HAL1 LINE L1 1642 1915 -592 239 256 64 0 chr13 41279225 41279303 -78465595 + HAL1 LINE L1 2059 2141 -366 1033 180 0 6 chr13 41279323 41279495 -78465403 - AluJb SINE Alu -13 299 129 389 281 65 54 chr13 41279554 41279814 -78465084 + HAL1 LINE L1 2240 2502 -5 356 346 87 22 chr13 41279835 41280147 -78464751 - L2 LINE L2 -418 2896 2565 361 200 279 48 chr13 41280394 41280559 -78464339 - MER105 DNA DNA -1 203 1 538 255 28 14 chr13 41280781 41280926 -78463972 + MLT1I LTR MaLR 9 155 -254 7582 35 1 0 chr13 41280931 41281820 -78463078 - L1PA4 LINE L1 0 6155 5266 565 238 88 77 chr13 41281825 41282086 -78462812 + MLT1I LTR MaLR 146 409 0 648 246 14 0 chr13 41282290 41282428 -78462470 + MER97a DNA MER1_type? 7 146 -748 1109 309 97 27 chr13 41282680 41283283 -78461615 - L2 LINE L2 -269 3044 2404 378 0 0 0 chr13 41283365 41283407 -78461491 + (TAA)n Simple_repeat Simple_repeat 2 43 0 312 137 0 0 chr13 41284533 41284584 -78460314 + (CA)n Simple_repeat Simple_repeat 2 52 0 643 206 202 31 chr13 41284633 41284856 -78460042 + MIR SINE MIR 2 262 0 641 244 86 25 chr13 41285112 41285309 -78459589 + MIR SINE MIR 45 253 -9 2280 93 0 13 chr13 41285784 41286085 -78458813 - AluSg SINE Alu -13 297 1 1518 222 221 56 chr13 41286649 41287161 -78457737 - L2 LINE L2 0 3313 2887 2257 115 0 3 chr13 41287161 41287466 -78457432 + AluSq SINE Alu 2 305 -8 1518 222 221 56 chr13 41287466 41288027 -78456871 - L2 LINE L2 -426 2887 2053 630 154 9 9 chr13 41288753 41288863 -78456035 + FLAM_A SINE Alu 29 138 -4 933 237 5 14 chr13 41288944 41289159 -78455739 - MIR SINE MIR -49 213 1 200 128 0 26 chr13 41289211 41289250 -78455648 + (TTG)n Simple_repeat Simple_repeat 1 38 0 1415 170 64 18 chr13 41289549 41289700 -78455198 - AluJo SINE Alu -17 295 152 2400 79 0 31 chr13 41289700 41290017 -78454881 - AluSx SINE Alu -5 307 1 1415 170 64 18 chr13 41290017 41290147 -78454751 - AluJo SINE Alu -160 152 1 379 179 26 0 chr13 41290458 41290536 -78454362 - MER5A DNA MER1_type -85 104 25 831 206 23 23 chr13 41290569 41290744 -78454154 - MER5B DNA MER1_type -2 176 2 875 180 67 6 chr13 41290755 41290933 -78453965 + MER5A DNA MER1_type 1 189 0 203 250 0 33 chr13 41290962 41291022 -78453876 + CT-rich Low_complexity Low_complexity 1 58 0 1330 186 36 112 chr13 41291188 41291581 -78453317 + MLT1A1 LTR MaLR 1 363 -2 4861 159 17 27 chr13 41292270 41293192 -78451706 - L1MB2 LINE L1 -4 6167 5255 933 226 25 5 chr13 41293206 41293410 -78451488 - L1MB2 LINE L1 -1269 4877 4670 980 150 20 7 chr13 41293556 41293709 -78451189 - FRAM SINE Alu -26 150 1 2532 183 77 20 chr13 41293709 41294293 -78450605 - L1M4 LINE L1 -862 5284 4668 245 288 106 42 chr13 41294306 41294542 -78450356 + L2 LINE L2 2697 2947 -367 306 276 0 0 chr13 41294553 41294629 -78450269 - L2 LINE L2 -1 3312 3237 185 341 0 0 chr13 41294801 41294845 -78450053 + L2 LINE L2 3137 3180 -92 22 35 0 0 chr13 41295818 41295847 -78449051 + AT_rich Low_complexity Low_complexity 1 29 0 490 310 26 37 chr13 41296407 41296676 -78448222 + L1ME4a LINE L1 5694 5887 -234 2348 105 0 0 chr13 41296815 41297119 -78447779 - AluSx SINE Alu -8 304 1 464 275 67 84 chr13 41297339 41297695 -78447203 - MLT1I LTR MaLR 0 409 60 857 212 26 78 chr13 41298077 41298308 -78446590 + MER20 DNA MER1_type 1 219 0 466 289 139 29 chr13 41298446 41298719 -78446179 + MLT1H LTR MaLR 232 534 -15 749 299 39 32 chr13 41298817 41299125 -78445773 - MLT1J LTR MaLR -182 329 20 209 216 59 0 chr13 41299560 41299611 -78445287 - L2 LINE L2 -492 2822 2769 1149 270 110 43 chr13 41299625 41299916 -78444982 + L1MC4a LINE L1 5307 5577 -2231 2526 57 0 0 chr13 41299916 41300213 -78444685 + AluY SINE Alu 1 297 -14 1149 270 110 43 chr13 41300213 41300528 -78444370 + L1MC4a LINE L1 5577 5954 -1854 27 49 0 0 chr13 41300616 41300657 -78444241 + AT_rich Low_complexity Low_complexity 1 41 0 1835 161 7 13 chr13 41300709 41301019 -78443879 - AluSx SINE Alu -4 308 1 340 298 96 11 chr13 41301047 41301235 -78443663 - L3 LINE CR1 -546 1031 828 2469 50 13 13 chr13 41301261 41301562 -78443336 + AluY SINE Alu 1 301 -10 244 133 33 44 chr13 41301721 41301811 -78443087 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 2206 83 14 0 chr13 41301906 41302194 -78442704 - AluY SINE Alu -19 292 1 442 210 37 9 chr13 41302471 41302585 -78442313 - L1ME4a LINE L1 -1 6376 1512 384 287 237 14 chr13 41303250 41303718 -78441180 + L2 LINE L2 2458 3030 -242 260 233 107 10 chr13 41303749 41303852 -78441046 + L1ME4a LINE L1 5979 6091 -30 359 263 91 116 chr13 41304104 41304553 -78440345 + L2 LINE L2 2835 3272 0 239 204 20 0 chr13 41304556 41304605 -78440293 - MIR SINE MIR -117 145 96 23 0 0 0 chr13 41305659 41305682 -78439216 + AT_rich Low_complexity Low_complexity 1 23 0 184 245 0 38 chr13 41305756 41305809 -78439089 - MIR3 SINE MIR -14 194 144 25 0 0 0 chr13 41306022 41306047 -78438851 + AT_rich Low_complexity Low_complexity 1 25 0 5116 80 41 25 chr13 41306047 41306774 -78438124 - SVA Other Other -4 1382 644 259 309 64 36 chr13 41306983 41307093 -78437805 - L2 LINE L2 -1 3312 3200 411 253 18 148 chr13 41308938 41309167 -78435731 - MIR SINE MIR -17 245 47 352 119 0 22 chr13 41309466 41309535 -78435363 + Alu SINE Alu 1 51 -252 2698 189 12 18 chr13 41309635 41310019 -78434879 - L1ME4a LINE L1 -5914 512 130 2527 136 8 104 chr13 41310019 41310418 -78434480 - MSTB LTR MaLR 0 426 77 1933 121 7 0 chr13 41310418 41310690 -78434208 - AluSx SINE Alu -9 303 30 2527 136 8 104 chr13 41310690 41310760 -78434138 - MSTB LTR MaLR -349 77 2 2698 189 12 18 chr13 41310760 41310871 -78434027 - L1ME4a LINE L1 -6296 130 20 324 347 28 35 chr13 41311173 41311317 -78433581 + MIR SINE MIR 33 175 -87 225 159 0 0 chr13 41311350 41311394 -78433504 + (CAT)n Simple_repeat Simple_repeat 2 45 0 209 347 21 0 chr13 41311398 41311493 -78433405 - L2 LINE L2 -1676 1638 1542 1299 219 0 0 chr13 41311863 41312105 -78432793 - MLT2C1 LTR ERVL -150 247 6 558 254 37 75 chr13 41312369 41312637 -78432261 - MIR SINE MIR -2 260 3 1912 132 10 24 chr13 41312658 41312954 -78431944 + AluSq SINE Alu 1 292 -21 707 151 126 8 chr13 41313054 41313173 -78431725 - FLAM_C SINE Alu 0 133 1 360 221 29 48 chr13 41314074 41314178 -78430720 + MLT1I LTR MaLR 25 126 -283 531 241 24 111 chr13 41315735 41315942 -78428956 - MIR SINE MIR -1 261 73 312 271 76 49 chr13 41316055 41316199 -78428699 - L2 LINE L2 0 3313 3166 270 319 55 51 chr13 41316606 41316879 -78428019 - L2 LINE L2 -457 2857 2584 256 360 27 27 chr13 41317435 41317546 -78427352 - L2 LINE L2 -981 2333 2223 206 250 125 0 chr13 41319415 41319479 -78425419 - MIR3 SINE MIR -52 156 85 1707 159 14 0 chr13 41320577 41320866 -78424032 + L1MA8 LINE L1 5995 6287 -4 314 256 0 0 chr13 41320897 41320983 -78423915 + A-rich Low_complexity Low_complexity 1 86 0 58 47 0 0 chr13 41320984 41321070 -78423828 + AT_rich Low_complexity Low_complexity 1 86 0 1002 152 79 0 chr13 41322372 41322550 -78422348 + LTR47A LTR ERVL 261 452 0 605 314 29 14 chr13 41322964 41323037 -78421861 + MIR SINE MIR 28 98 -164 446 145 0 84 chr13 41323037 41323120 -78421778 - MER116 DNA Mariner -2 78 3 605 314 29 14 chr13 41323120 41323256 -78421642 + MIR SINE MIR 98 240 -22 817 153 0 36 chr13 41323436 41323573 -78421325 - FLAM_C SINE Alu 0 133 2 192 163 0 0 chr13 41324894 41324937 -78419961 + (CTG)n Simple_repeat Simple_repeat 2 44 0 2690 20 0 0 chr13 41325066 41325366 -78419532 - AluYb8 SINE Alu -18 300 1 399 312 200 5 chr13 41325594 41325809 -78419089 + MIR SINE MIR 2 258 -4 3818 106 31 30 chr13 41325858 41326500 -78418398 - L1MA3 LINE L1 -158 6147 5505 803 304 90 24 chr13 41326669 41326942 -78417956 + LTR16B LTR ERVL 1 313 -151 3114 122 48 19 chr13 41326942 41327458 -78417440 - LTR26B LTR ERV1 0 531 1 803 304 90 24 chr13 41327458 41327605 -78417293 + LTR16B LTR ERVL 313 449 -15 1541 140 20 48 chr13 41328993 41329204 -78415694 + MER49 LTR ERV1 1 203 -720 2318 105 0 0 chr13 41329204 41329498 -78415400 - AluSx SINE Alu -18 294 1 1541 140 20 48 chr13 41329498 41329579 -78415319 + MER49 LTR ERV1 203 285 -638 392 180 0 77 chr13 41329571 41329686 -78415212 + MER4E LTR ERV1 59 168 -611 * 1008 186 90 32 chr13 41329956 41330452 -78414446 - MLT1E3 LTR MaLR 0 624 20 1308 77 0 0 chr13 41330506 41330675 -78414223 + AluY SINE Alu 137 305 -6 1516 127 72 36 chr13 41330998 41331274 -78413624 + AluJo SINE Alu 27 312 0 2180 101 0 36 chr13 41331405 41331711 -78413187 + AluSx SINE Alu 1 295 -17 520 239 113 50 chr13 41332715 41332954 -78411944 - MLT1J2 LTR MaLR 0 450 197 2185 233 16 21 chr13 41332959 41333525 -78411373 + MER119 DNA MER1_type 5 567 -16 522 287 6 24 chr13 41333520 41333687 -78411211 - MLT1J2 LTR MaLR -250 200 37 * 2068 112 7 7 chr13 41333715 41334010 -78410888 + AluSx SINE Alu 1 295 -17 211 321 104 33 chr13 41334187 41334368 -78410530 - MIR3 SINE MIR -63 145 1 368 100 25 26 chr13 41334618 41334690 -78410208 + MSTD LTR MaLR 1 76 -289 1673 245 59 65 chr13 41334699 41335610 -78409288 + L1PA12 LINE L1 37 2228 -4770 10742 125 37 9 chr13 41335611 41338141 -78406757 + L1PA10 LINE L1 3570 6168 0 1591 188 71 6 chr13 41338142 41338309 -78406589 + MSTD LTR MaLR 39 194 -202 252 0 0 0 chr13 41338309 41338337 -78406561 + (TC)n Simple_repeat Simple_repeat 1 28 0 1591 188 71 6 chr13 41338337 41338505 -78406393 + MSTD LTR MaLR 194 396 0 1118 208 100 20 chr13 41339873 41340066 -78404832 - MLT1B LTR MaLR 0 390 214 1726 177 3 19 chr13 41340066 41340377 -78404521 - AluSx SINE Alu -6 306 1 1118 208 100 20 chr13 41340377 41340524 -78404374 - MLT1B LTR MaLR -176 214 23 234 345 34 10 chr13 41340607 41340766 -78404132 - MIR SINE MIR -34 228 15 3033 119 47 43 chr13 41341188 41341381 -78403517 + LTR26B LTR ERV1 1 192 -339 2045 124 7 0 chr13 41341381 41341671 -78403227 + AluSq SINE Alu 1 292 -21 3033 119 47 43 chr13 41341671 41342006 -78402892 + LTR26B LTR ERV1 192 531 0 951 211 83 15 chr13 41342495 41342760 -78402138 + MER4D LTR ERV1 621 903 0 194 360 13 0 chr13 41344051 41344126 -78400772 + L3 LINE CR1 755 830 -747 424 262 161 13 chr13 41344156 41344305 -78400593 + MIR3 SINE MIR 15 185 -23 514 165 40 191 chr13 41344338 41344610 -78400288 + L1MC4 LINE L1 6796 7026 -1016 375 227 82 0 chr13 41344625 41344735 -78400163 + L1MC4 LINE L1 7924 8042 0 532 306 179 32 chr13 41344952 41345331 -78399567 + L3 LINE CR1 1099 1533 -44 24 0 0 0 chr13 41345623 41345647 -78399251 + AT_rich Low_complexity Low_complexity 1 24 0 339 265 22 72 chr13 41345661 41345842 -78399056 + L1M4 LINE L1 4487 4658 -1488 1019 221 53 0 chr13 41346677 41346885 -78398013 - MER58A DNA MER1_type 0 224 6 334 262 151 8 chr13 41347706 41347832 -78397066 - MIR3 SINE MIR -1 207 64 288 299 37 27 chr13 41349405 41349592 -78395306 + HAL1 LINE L1 1616 1804 -703 601 260 15 10 chr13 41349601 41349805 -78395093 + L1MA9 LINE L1 6070 6274 -38 2169 117 0 13 chr13 41349834 41350143 -78394755 + AluSg SINE Alu 1 305 -5 2033 155 3 0 chr13 41350364 41350661 -78394237 - AluSx SINE Alu -14 298 1 325 351 8 15 chr13 41350842 41350973 -78393925 + L2 LINE L2 3182 3311 -2 249 270 135 8 chr13 41351077 41351203 -78393695 + MLT1L LTR MaLR 474 615 0 1576 208 82 10 chr13 41351597 41351810 -78393088 - LTR52 LTR ERVL -1 420 224 201 94 0 0 chr13 41351810 41351842 -78393056 + (TGGGGG)n Simple_repeat Simple_repeat 2 33 0 1576 208 82 10 chr13 41351842 41352018 -78392880 - LTR52 LTR ERVL -197 224 3 5603 151 16 10 chr13 41352530 41354125 -78390773 - L1PB1 LINE L1 -2 6865 5267 3136 177 79 0 chr13 41354126 41354770 -78390128 - L1PB1 LINE L1 -3412 3450 2737 181 0 69 0 chr13 41354770 41354799 -78390099 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3136 177 79 0 chr13 41354799 41354897 -78390001 - L1PB1 LINE L1 -4125 2737 2648 * 6115 195 165 8 chr13 41354894 41356687 -78388211 - L1PB1 LINE L1 -4783 2080 6 725 328 89 8 chr13 41357036 41357405 -78387493 + MLT1L LTR MaLR 7 405 -210 1550 137 160 28 chr13 41357519 41357956 -78386942 - LTR54B LTR ERV1 -2 496 2 407 266 71 13 chr13 41358174 41358328 -78386570 + MLT1H LTR MaLR 180 342 -207 834 286 51 32 chr13 41358506 41358876 -78386022 + MLT1I LTR MaLR 33 409 0 1242 223 129 88 chr13 41358876 41358957 -78385941 - L2 LINE L2 -254 3059 2983 2158 133 33 16 chr13 41358957 41359324 -78385574 - THE1C LTR MaLR -2 373 1 1242 223 129 88 chr13 41359324 41359553 -78385345 - L2 LINE L2 -330 2983 2765 1737 151 14 7 chr13 41359553 41359831 -78385067 - AluJo SINE Alu -32 280 1 1242 223 129 88 chr13 41359831 41360143 -78384755 - L2 LINE L2 -548 2765 2420 440 287 57 29 chr13 41361151 41361405 -78383493 + L2 LINE L2 2760 3018 -254 253 222 63 0 chr13 41361510 41361573 -78383325 - L2 LINE L2 -557 2757 2691 236 175 0 0 chr13 41361568 41361608 -78383290 + L2 LINE L2 3027 3066 -247 * 2585 150 6 8 chr13 41361649 41362117 -78382781 - MER41B LTR ERV1 -39 596 130 251 289 31 38 chr13 41362323 41362482 -78382416 - LTR33 LTR ERVL -331 190 33 312 324 199 12 chr13 41362512 41362768 -78382130 + L2 LINE L2 3001 3304 -9 245 222 19 0 chr13 41362768 41362822 -78382076 + GA-rich Low_complexity Low_complexity 3 57 0 310 354 31 23 chr13 41363019 41363149 -78381749 - MIR SINE MIR -71 191 61 261 0 0 0 chr13 41363791 41363820 -78381078 + (TG)n Simple_repeat Simple_repeat 2 30 0 1000 233 163 96 chr13 41364523 41365076 -78379822 + MLT1G1 LTR MaLR 1 590 -5 414 264 56 71 chr13 41365719 41365916 -78378982 - L2 LINE L2 -3 3310 3117 1583 116 6 142 chr13 41366790 41367165 -78377733 - AluSg1 SINE Alu 0 309 1 191 250 19 39 chr13 41367622 41367674 -78377224 + MIR SINE MIR 47 97 -165 260 252 94 24 chr13 41368814 41368941 -78375957 - MER103 DNA DNA -20 146 11 223 265 88 98 chr13 41370631 41370733 -78374165 - MIR3 SINE MIR -105 103 3 823 93 106 56 chr13 41370948 41371109 -78373789 - MER44D DNA MER2_type -4 701 533 4118 118 52 4 chr13 41371109 41371827 -78373071 - Tigger3(Golem) DNA MER2_type -1 3028 2277 438 169 0 0 chr13 41371820 41371891 -78373007 - Tigger3(Golem) DNA MER2_type -2923 106 36 * 534 250 79 0 chr13 41371951 41372103 -78372795 - MER44D DNA MER2_type -171 438 5 765 234 72 63 chr13 41372113 41372446 -78372452 + MER46C DNA MER2_type 3 338 0 628 235 6 0 chr13 41372475 41372637 -78372261 - HAL1b LINE L1 -7 1341 1179 615 263 122 62 chr13 41372683 41372810 -78372088 - HAL1b LINE L1 -323 1025 907 3786 200 19 65 chr13 41372810 41373826 -78371072 + LTR5 LTR ERVK 1 969 0 615 263 122 62 chr13 41373826 41374397 -78370501 - HAL1b LINE L1 -441 907 285 2956 76 3 0 chr13 41374447 41374801 -78370097 - THE1A LTR MaLR 0 355 1 203 267 0 0 chr13 41374845 41374905 -78369993 + T-rich Low_complexity Low_complexity 2 61 0 329 309 115 7 chr13 41374972 41375111 -78369787 + L2 LINE L2 3160 3313 0 313 252 97 32 chr13 41376419 41376440 -78368458 - L1MA10 LINE L1 -1 6333 6313 3273 212 85 24 chr13 41376440 41377071 -78367827 - L1ME1 LINE L1 -12 6154 5456 1766 162 0 27 chr13 41377071 41377208 -78367690 + AluJo SINE Alu 1 140 -172 2200 81 22 0 chr13 41377208 41377511 -78367387 + AluSc SINE Alu 1 309 0 1766 162 0 27 chr13 41377511 41377668 -78367230 + AluJo SINE Alu 140 288 -24 3273 212 85 24 chr13 41377668 41377884 -78367014 - L1ME1 LINE L1 -710 5456 5255 1974 174 47 20 chr13 41377884 41378293 -78366605 - LTR52 LTR ERVL -1 420 1 1979 123 4 7 chr13 41378349 41378626 -78366272 - AluSq SINE Alu -37 276 1 266 215 46 31 chr13 41379103 41379168 -78365730 - L2 LINE L2 -23 3249 3184 5172 68 18 2 chr13 41379770 41380400 -78364498 + L1PA7 LINE L1 5513 6152 -2 1121 323 167 23 chr13 41380437 41381406 -78363492 + L3 LINE CR1 367 1519 -58 516 275 64 64 chr13 41381537 41381559 -78363339 - MIR SINE MIR -25 237 216 330 87 0 0 chr13 41381559 41381605 -78363293 + (TA)n Simple_repeat Simple_repeat 1 46 0 516 275 64 64 chr13 41381605 41381713 -78363185 - MIR SINE MIR -46 216 104 1875 194 41 22 chr13 41381713 41382080 -78362818 + MLT1A2 LTR MaLR 1 374 0 516 275 64 64 chr13 41382080 41382166 -78362732 - MIR SINE MIR -157 105 20 298 154 115 91 chr13 41382958 41383071 -78361827 - MLT1I LTR MaLR 0 549 275 2894 131 41 5 chr13 41383441 41383852 -78361046 + MSTB LTR MaLR 1 426 0 236 204 0 37 chr13 41383853 41383907 -78360991 - MLT1L LTR MaLR -555 60 9 467 332 62 12 chr13 41384058 41384302 -78360596 - MIR SINE MIR -6 256 1 306 346 68 0 chr13 41384351 41384484 -78360414 - L3 LINE CR1 -267 1310 1169 1249 188 71 23 chr13 41384630 41384896 -78360002 + AluJo SINE Alu 1 279 -33 231 88 0 0 chr13 41384899 41384933 -78359965 + (TAA)n Simple_repeat Simple_repeat 1 34 0 358 301 45 30 chr13 41385080 41385259 -78359639 + MER20B DNA MER1_type 34 219 0 418 290 107 45 chr13 41386332 41386556 -78358342 + MIR SINE MIR 1 238 -24 763 307 53 0 chr13 41386562 41386790 -78358108 - MIR SINE MIR -21 241 2 359 310 123 77 chr13 41387132 41387296 -78357602 - L3 LINE CR1 -407 1170 1015 2237 125 0 0 chr13 41387296 41387607 -78357291 - AluSx SINE Alu -1 311 1 359 310 123 77 chr13 41387607 41387832 -78357066 - L3 LINE CR1 -562 1015 763 343 65 0 0 chr13 41387836 41387882 -78357016 - MADE1 DNA Mariner 0 80 35 30 0 0 0 chr13 41387882 41387912 -78356986 + AT_rich Low_complexity Low_complexity 1 30 0 291 43 0 5 chr13 41387928 41387975 -78356923 - MADE1 DNA Mariner -42 38 4 534 363 144 5 chr13 41388059 41388428 -78356470 + L3 LINE CR1 236 655 -922 248 267 55 73 chr13 41388927 41389092 -78355806 - L2 LINE L2 -103 3210 3049 212 256 0 0 chr13 41389340 41389383 -78355515 + L2 LINE L2 3267 3309 -4 2143 103 7 3 chr13 41389534 41389826 -78355072 + AluSg SINE Alu 1 293 -17 303 350 37 25 chr13 41390001 41390164 -78354734 - L2 LINE L2 -211 3061 2897 3706 158 33 16 chr13 41390181 41390847 -78354051 + L1MC2 LINE L1 5658 6334 -10 301 319 123 23 chr13 41390955 41391297 -78353601 - L2 LINE L2 -468 2846 2471 561 277 85 68 chr13 41392026 41392496 -78352402 - MLT1J LTR MaLR -33 478 1 390 245 149 27 chr13 41394612 41394800 -78350098 - L1ME LINE L1 -438 5683 5473 299 262 193 22 chr13 41395056 41395331 -78349567 - L1ME4a LINE L1 -1 6120 5799 846 168 90 18 chr13 41395502 41395669 -78349229 + MER20 DNA MER1_type 29 207 -12 406 277 93 63 chr13 41395692 41396018 -78348880 + MLT1H LTR MaLR 96 547 -2 399 223 29 39 chr13 41396036 41396139 -78348759 - MIR SINE MIR -160 102 1 362 270 132 11 chr13 41396147 41396321 -78348577 - L1ME4a LINE L1 -338 5783 5589 31 0 0 0 chr13 41396564 41396595 -78348303 + AT_rich Low_complexity Low_complexity 1 31 0 582 253 129 10 chr13 41397221 41397415 -78347483 + MER45C DNA AcHobo 13 229 -724 929 188 41 41 chr13 41397513 41397710 -78347188 + AluJo SINE Alu 109 305 -7 723 327 44 17 chr13 41398845 41399206 -78345692 - MLT1I LTR MaLR 0 409 39 188 280 56 84 chr13 41399610 41399860 -78345038 + L2 LINE L2 2848 3090 -182 1827 129 84 19 chr13 41399877 41400187 -78344711 + MER44D DNA MER2_type 1 600 -9 208 275 188 0 chr13 41400249 41400329 -78344569 + L2 LINE L2 3160 3254 -18 380 245 21 0 chr13 41401366 41401460 -78343438 + MER94 DNA DNA 39 134 0 198 243 0 108 chr13 41401566 41401640 -78343258 - MIR3 SINE MIR -1 207 142 * 297 337 83 12 chr13 41401636 41401706 -78343192 + MER5A DNA MER1_type 9 73 -116 2451 94 0 0 chr13 41401706 41402015 -78342883 + AluSp SINE Alu 1 309 -4 297 337 83 12 chr13 41402015 41402113 -78342785 + MER5A DNA MER1_type 73 189 0 197 175 53 53 chr13 41402120 41402177 -78342721 - MIR SINE MIR -119 143 87 300 291 146 36 chr13 41402270 41402435 -78342463 + MIR3 SINE MIR 23 205 -3 2720 148 16 73 chr13 41402807 41403299 -78341599 + MLT2C2 LTR ERVL 1 464 0 324 263 12 0 chr13 41403441 41403521 -78341377 + L2 LINE L2 3188 3268 -4 801 281 23 30 chr13 41403761 41404024 -78340874 + MIR SINE MIR 2 262 0 867 199 46 7 chr13 41404108 41404259 -78340639 + FRAM SINE Alu 2 158 -18 1953 157 49 35 chr13 41404639 41405009 -78339889 + THE1C LTR MaLR 1 375 0 1645 148 73 20 chr13 41405037 41405158 -78339740 - L1MB7 LINE L1 -214 5970 5857 2419 144 3 19 chr13 41405158 41405527 -78339371 - MER47A DNA MER2_type 0 366 4 1645 148 73 20 chr13 41405527 41405708 -78339190 - L1MB7 LINE L1 -327 5857 5652 525 263 160 30 chr13 41406444 41406756 -78338142 + MLT1H LTR MaLR 114 498 -57 207 0 0 0 chr13 41406756 41406779 -78338119 + (CAA)n Simple_repeat Simple_repeat 2 24 0 525 263 160 30 chr13 41406779 41406846 -78338052 + MLT1H LTR MaLR 498 555 0 1064 169 33 5 chr13 41407306 41407490 -78337408 + MER5A DNA MER1_type 1 189 0 1517 201 85 13 chr13 41407498 41407816 -78337082 - MER58B DNA MER1_type 0 341 1 376 296 70 9 chr13 41409050 41409165 -78335733 - MIR SINE MIR -128 134 13 643 291 84 0 chr13 41409223 41409436 -78335462 - MIR SINE MIR -27 235 5 492 299 112 5 chr13 41409433 41409647 -78335251 + MIR SINE MIR 26 262 0 * 711 146 28 97 chr13 41409734 41409878 -78335020 - AluJb SINE Alu -177 135 2 888 228 52 77 chr13 41409892 41410295 -78334603 - L1ME4a LINE L1 -19 6102 5710 420 271 49 42 chr13 41410372 41410516 -78334382 + MIR SINE MIR 48 192 -70 535 255 42 75 chr13 41410531 41410770 -78334128 - L1ME4a LINE L1 -479 5642 5412 26 0 0 0 chr13 41411735 41411761 -78333137 + AT_rich Low_complexity Low_complexity 1 26 0 587 114 13 0 chr13 41412952 41413031 -78331867 - MADE1 DNA Mariner 0 80 1 261 320 78 31 chr13 41413298 41413426 -78331472 + L2 LINE L2 3139 3272 0 236 351 53 47 chr13 41413993 41414164 -78330734 - MIR SINE MIR -14 248 77 180 0 0 0 chr13 41416602 41416622 -78328276 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 2227 111 7 0 chr13 41416726 41417032 -78327866 - AluY SINE Alu -3 308 1 322 135 0 40 chr13 41417419 41417493 -78327405 + (TTTC)n Simple_repeat Simple_repeat 4 74 0 2158 128 7 0 chr13 41417510 41417816 -78327082 - AluSx SINE Alu -4 308 1 700 200 14 98 chr13 41419652 41419867 -78325031 - MER3 DNA MER1_type -7 202 6 209 341 77 0 chr13 41419981 41420072 -78324826 - MIR SINE MIR -75 133 36 753 294 75 27 chr13 41420953 41421364 -78323534 + L1ME LINE L1 3476 3906 -2240 429 345 60 42 chr13 41421457 41421842 -78323056 + MLT1I LTR MaLR 16 407 -2 749 287 90 50 chr13 41421848 41422210 -78322688 + L1ME LINE L1 3999 4345 -1801 204 40 0 0 chr13 41422210 41422235 -78322663 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 943 144 0 0 chr13 41422242 41422367 -78322531 - FLAM_C SINE Alu -8 125 1 749 287 90 50 chr13 41422367 41423057 -78321841 + L1ME LINE L1 4350 5207 -939 292 278 220 19 chr13 41423090 41423261 -78321637 + L1ME LINE L1 5325 5460 -702 495 0 0 0 chr13 41423261 41423316 -78321582 + (TA)n Simple_repeat Simple_repeat 1 55 0 292 278 220 19 chr13 41423316 41423403 -78321495 + L1ME LINE L1 5460 5635 -527 456 178 262 9 chr13 41423659 41423766 -78321132 - MER45 DNA AcHobo 0 1581 1448 625 283 93 61 chr13 41423925 41424367 -78320531 + L1MC4a LINE L1 5517 5972 -1836 1313 235 91 20 chr13 41424369 41424710 -78320188 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr13 41424825 41424850 -78320048 + AT_rich Low_complexity Low_complexity 1 25 0 230 295 125 54 chr13 41425171 41425283 -78319615 - L2 LINE L2 -17 3255 3136 303 280 85 44 chr13 41425808 41425966 -78318932 + MIR SINE MIR 38 207 -55 402 21 0 0 chr13 41426670 41426717 -78318181 + (CA)n Simple_repeat Simple_repeat 2 48 0 302 208 0 0 chr13 41427448 41427501 -78317397 + MER91 DNA MER1_type 1 53 -87 2369 135 30 30 chr13 41427593 41427957 -78316941 - THE1B LTR MaLR 0 364 1 240 35 0 0 chr13 41429201 41429230 -78315668 + (CA)n Simple_repeat Simple_repeat 1 29 0 586 201 90 155 chr13 41429255 41429609 -78315289 - LTR37A LTR ERV1 -5 421 91 5421 155 9 12 chr13 41429679 41430567 -78314331 + MER4D LTR ERV1 2 886 -17 234 250 78 0 chr13 41430778 41430842 -78314056 - MIR3 SINE MIR -7 201 133 24 0 0 0 chr13 41431638 41431662 -78313236 + AT_rich Low_complexity Low_complexity 1 24 0 1920 169 20 48 chr13 41432271 41432625 -78312273 - MER2 DNA MER2_type 0 344 1 285 151 0 0 chr13 41432996 41433049 -78311849 + CT-rich Low_complexity Low_complexity 3 55 0 251 291 67 15 chr13 41433323 41433457 -78311441 - L1MDa LINE L1 -4649 1891 1751 355 284 19 43 chr13 41433460 41433622 -78311276 + L2 LINE L2 3151 3308 -5 195 350 70 0 chr13 41433696 41433796 -78311102 + L2 LINE L2 2648 2754 -560 1817 180 0 6 chr13 41433845 41434156 -78310742 + AluJo SINE Alu 1 309 -3 278 271 54 39 chr13 41434224 41434353 -78310545 + L2 LINE L2 2954 3084 -188 308 260 173 40 chr13 41434407 41434580 -78310318 - L2 LINE L2 -1 3312 3117 23 68 0 0 chr13 41434854 41434898 -78310000 + AT_rich Low_complexity Low_complexity 1 44 0 287 203 29 29 chr13 41435118 41435187 -78309711 - MLT1K LTR MaLR -67 521 453 * 339 314 21 68 chr13 41435168 41435359 -78309539 - MLT1K LTR MaLR -404 184 3 1019 234 122 32 chr13 41435393 41435803 -78309095 - Charlie1b DNA MER1_type -31 492 46 * 1160 159 72 120 chr13 41435801 41435937 -78308961 - MLT1D LTR MaLR -188 317 176 2553 71 0 0 chr13 41435937 41436247 -78308651 - AluY SINE Alu -1 310 1 1160 159 72 120 chr13 41436247 41436443 -78308455 - MLT1D LTR MaLR -329 176 1 431 197 114 30 chr13 41436458 41436590 -78308308 + LTR33 LTR ERVL 370 512 -9 4019 177 49 42 chr13 41437101 41437975 -78306923 - MER49 LTR ERV1 -11 912 33 1861 156 7 0 chr13 41438487 41438801 -78306097 - AluSx SINE Alu 0 316 1 252 314 112 37 chr13 41439644 41439832 -78305066 + L2 LINE L2 2588 2789 -525 443 333 17 0 chr13 41439985 41440105 -78304793 - L2 LINE L2 0 3272 3151 180 0 0 0 chr13 41440303 41440323 -78304575 + (TA)n Simple_repeat Simple_repeat 2 21 0 541 303 32 83 chr13 41440813 41440952 -78303946 + L1MEc LINE L1 790 935 -5461 2123 112 10 3 chr13 41440952 41441248 -78303650 - AluSp SINE Alu -15 298 1 541 303 32 83 chr13 41441248 41441481 -78303417 + L1MEc LINE L1 935 1143 -5253 758 282 63 32 chr13 41441643 41442118 -78302780 + L1MDa LINE L1 1259 1748 -4792 2195 129 3 3 chr13 41442167 41442478 -78302420 - AluSq SINE Alu -2 311 1 783 324 76 56 chr13 41443451 41444098 -78300800 - L2 LINE L2 -253 3060 2377 323 330 52 88 chr13 41444131 41444277 -78300621 + L2 LINE L2 2955 3105 -167 1764 169 43 10 chr13 41444277 41444578 -78300320 - AluSx SINE Alu -1 311 1 323 330 52 88 chr13 41444578 41444761 -78300137 + L2 LINE L2 3105 3272 0 4010 121 55 63 chr13 41444997 41446268 -78298630 - pTR5 LTR ERV1 -143 2295 281 367 239 171 8 chr13 41446451 41446568 -78298330 + MIR SINE MIR 5 140 -122 243 319 0 0 chr13 41446642 41446711 -78298187 + MIR SINE MIR 163 231 -31 2187 105 34 0 chr13 41447238 41447533 -78297365 + AluSx SINE Alu 1 305 -7 9904 25 5 1 chr13 41447754 41449624 -78295274 - L1PA3 LINE L1 0 6155 4282 12193 29 1 0 chr13 41449624 41451058 -78293840 + L1PA3 LINE L1 2844 4278 -1868 302 348 50 7 chr13 41451330 41451471 -78293427 + L3 LINE CR1 1417 1563 -14 616 178 12 0 chr13 41451581 41451696 -78293202 + MER3 DNA MER1_type 7 2337 0 198 118 29 0 chr13 41451780 41451814 -78293084 + L2 LINE L2 3263 3297 -16 1916 155 12 108 chr13 41452767 41453194 -78291704 + MLT1B LTR MaLR 5 390 0 234 91 0 0 chr13 41454263 41454296 -78290602 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 186 62 0 62 chr13 41454613 41454661 -78290237 + (TTTAA)n Simple_repeat Simple_repeat 1 45 0 23 0 0 0 chr13 41454693 41454716 -78290182 + AT_rich Low_complexity Low_complexity 1 23 0 207 213 0 21 chr13 41454774 41454821 -78290077 + (TATATG)n Simple_repeat Simple_repeat 4 49 0 544 270 49 5 chr13 41455284 41455469 -78289429 - L1ME LINE L1 -340 5781 5589 367 319 25 0 chr13 41455972 41456091 -78288807 - L2 LINE L2 -9 3263 3142 467 294 34 67 chr13 41458034 41458272 -78286626 - MIR SINE MIR 0 262 33 1691 153 162 86 chr13 41459956 41460387 -78284511 - MLT1C LTR MaLR -3 464 1 475 275 21 7 chr13 41460387 41460529 -78284369 + MIR SINE MIR 119 262 0 554 216 15 30 chr13 41461424 41461558 -78283340 + FLAM_A SINE Alu 1 132 -1 348 268 9 18 chr13 41461599 41461711 -78283187 + HsTC2 DNA Tc2 1788 1898 0 321 269 39 0 chr13 41462923 41463001 -78281897 - L2 LINE L2 -43 3229 3149 2084 106 22 0 chr13 41464054 41464352 -78280546 + AluSg SINE Alu 1 304 0 483 303 108 28 chr13 41464690 41465075 -78279823 - L2 LINE L2 -193 3079 2652 2309 140 6 105 chr13 41465075 41465553 -78279345 - MSTB1 LTR MaLR 0 432 2 483 303 108 28 chr13 41465553 41465606 -78279292 - L2 LINE L2 -620 2652 2605 1108 188 47 24 chr13 41465797 41466010 -78278888 + MER20 DNA MER1_type 1 218 -1 2296 144 18 73 chr13 41467842 41468280 -78276618 - MLT2D LTR ERVL 0 414 1 633 312 55 13 chr13 41468689 41468926 -78275972 - MIR SINE MIR -10 252 6 944 293 56 68 chr13 41470949 41470992 -78273906 - MLT1K LTR MaLR -12 576 534 2445 130 28 0 chr13 41470992 41471346 -78273552 + THE1B LTR MaLR 1 364 0 944 293 56 68 chr13 41471346 41471875 -78273023 - MLT1K LTR MaLR -54 534 11 22 35 0 0 chr13 41473317 41473346 -78271552 + AT_rich Low_complexity Low_complexity 1 29 0 1258 197 38 4 chr13 41474018 41474282 -78270616 + L1MA4 LINE L1 6022 6294 -6 23 0 0 0 chr13 41474747 41474770 -78270128 + AT_rich Low_complexity Low_complexity 1 23 0 201 317 81 56 chr13 41474923 41475084 -78269814 + MIR SINE MIR 92 256 -6 4426 214 63 68 chr13 41476108 41477280 -78267618 + L1MC4a LINE L1 6272 7436 -372 2415 93 0 0 chr13 41477280 41477591 -78267307 + AluY SINE Alu 1 311 0 4426 214 63 68 chr13 41477591 41477963 -78266935 + L1MC4a LINE L1 7436 7808 0 1727 206 61 47 chr13 41478047 41478360 -78266538 - MLT1D LTR MaLR -7 498 174 2358 94 7 0 chr13 41478360 41478667 -78266231 - AluSp SINE Alu -4 309 1 1727 206 61 47 chr13 41478667 41478844 -78266054 - MLT1D LTR MaLR -331 174 1 551 301 30 12 chr13 41479640 41479806 -78265092 - MER5B DNA MER1_type -8 170 2 821 282 32 51 chr13 41480236 41480708 -78264190 + LTR16B LTR ERVL 1 463 -1 559 255 76 6 chr13 41480911 41481068 -78263830 - MER5B DNA MER1_type -6 172 5 23 0 0 0 chr13 41483982 41484005 -78260893 + AT_rich Low_complexity Low_complexity 1 23 0 233 219 14 14 chr13 41484067 41484140 -78260758 + L1ME LINE L1 5643 5715 -406 * 29139 115 10 57 chr13 41484134 41490588 -78254310 - L1PA7 LINE L1 -3 6151 12 212 342 162 0 chr13 41491130 41491247 -78253651 - MIR SINE MIR -95 167 32 23 0 0 0 chr13 41491850 41491873 -78253025 + AT_rich Low_complexity Low_complexity 1 23 0 1861 141 42 0 chr13 41493521 41493805 -78251093 - AluSx SINE Alu -16 296 1 1264 237 132 20 chr13 41494620 41495068 -78249830 + MLT1D LTR MaLR 8 505 0 411 315 45 94 chr13 41495394 41495661 -78249237 - L2 LINE L2 0 3272 3019 314 261 129 54 chr13 41496582 41496986 -78247912 - L1MEc LINE L1 -2833 3296 2833 2117 212 43 25 chr13 41496986 41497496 -78247402 - LTR40a LTR ERVL 0 519 1 314 261 129 54 chr13 41497496 41497681 -78247217 - L1MEc LINE L1 -3296 2833 2663 352 293 73 7 chr13 41498386 41498536 -78246362 - L1MEc LINE L1 -4656 1654 1495 281 241 0 0 chr13 41498538 41498596 -78246302 - L1MEc LINE L1 -5447 672 615 535 320 123 5 chr13 41498653 41499050 -78245848 - L1MEc LINE L1 -5586 533 90 487 242 131 75 chr13 41499064 41499370 -78245528 + MLT1J LTR MaLR 141 463 -48 243 329 163 50 chr13 41501845 41502325 -78242573 + L2 LINE L2 2008 2541 -773 563 308 0 0 chr13 41502461 41502628 -78242270 + MIR SINE MIR 65 230 -32 216 269 19 0 chr13 41502649 41502701 -78242197 + CT-rich Low_complexity Low_complexity 1 53 0 234 143 18 18 chr13 41502730 41502786 -78242112 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 29138 117 16 78 chr13 41503129 41508881 -78236017 - L1P LINE L1 -743 5403 13 2153 8 0 0 chr13 41509598 41509842 -78235056 - L1PA2 LINE L1 -1 6154 5911 2309 12 0 0 chr13 41509842 41510163 -78234735 + L1P LINE L1 5107 5427 -728 223 329 0 0 chr13 41511637 41511710 -78233188 + (CAG)n Simple_repeat Simple_repeat 3 75 0 289 291 58 17 chr13 41511838 41512010 -78232888 + LTR33A LTR ERVL 329 507 -16 191 349 75 0 chr13 41513800 41513906 -78230992 - MIR SINE MIR -51 211 98 374 199 202 71 chr13 41514355 41514511 -78230387 + L1ME4a LINE L1 5796 5930 -191 1761 180 7 10 chr13 41514511 41514817 -78230081 + AluJo SINE Alu 7 311 -1 374 199 202 71 chr13 41514817 41514860 -78230038 + L1ME4a LINE L1 5930 5966 -155 1310 171 4 17 chr13 41514860 41515099 -78229799 - MER46A DNA MER2_type 0 236 1 374 199 202 71 chr13 41515099 41515180 -78229718 + L1ME4a LINE L1 5966 6114 -7 21 36 0 0 chr13 41515190 41515218 -78229680 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr13 41515302 41515332 -78229566 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr13 41515651 41515671 -78229227 + (T)n Simple_repeat Simple_repeat 1 20 0 2266 50 0 57 chr13 41516013 41516348 -78228550 + AluY SINE Alu 1 318 0 273 255 57 92 chr13 41516993 41517134 -78227764 + MIR SINE MIR 123 258 -4 776 173 18 36 chr13 41517323 41517491 -78227407 - MER20 DNA MER1_type -54 165 1 240 241 0 17 chr13 41517701 41517759 -78227139 + L2 LINE L2 2999 3055 -217 475 283 181 22 chr13 41518724 41518950 -78225948 - MIR SINE MIR 0 262 1 713 291 40 14 chr13 41519252 41519475 -78225423 - MIR SINE MIR 0 262 34 444 261 24 111 chr13 41519560 41519767 -78225131 - MER5A DNA MER1_type 0 189 1 297 0 0 0 chr13 41521114 41521147 -78223751 + (TG)n Simple_repeat Simple_repeat 2 34 0 204 271 140 28 chr13 41522258 41522365 -78222533 + L2 LINE L2 3193 3311 -2 1587 202 19 19 chr13 41522456 41522975 -78221923 + MER97c DNA MER1_type? 1 588 -306 2861 191 23 0 chr13 41523162 41523504 -78221394 - L1PA16 LINE L1 -24 6142 5780 357 24 0 0 chr13 41523504 41523546 -78221352 + (TG)n Simple_repeat Simple_repeat 2 43 0 2861 191 23 0 chr13 41523546 41523775 -78221123 - L1PA16 LINE L1 -386 5780 5558 2436 252 39 0 chr13 41523775 41524413 -78220485 - L1ME1 LINE L1 -56 6110 5448 1692 265 75 18 chr13 41524809 41525357 -78219541 - MLT1E LTR MaLR 0 593 15 359 261 346 0 chr13 41525366 41525496 -78219402 + MER96 DNA MER1_type 1 175 0 228 291 87 58 chr13 41525758 41525861 -78219037 + MER5A DNA MER1_type 1 106 -83 2011 120 0 24 chr13 41526737 41527028 -78217870 + AluSx SINE Alu 1 315 0 210 32 0 32 chr13 41527028 41527059 -78217839 + (TAA)n Simple_repeat Simple_repeat 2 180 0 181 224 52 52 chr13 41529968 41530026 -78214872 - L2 LINE L2 -6 3266 3209 207 0 0 0 chr13 41530348 41530371 -78214527 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2151 139 7 0 chr13 41530391 41530701 -78214197 + AluSx SINE Alu 1 312 0 542 301 46 6 chr13 41530796 41530969 -78213929 + MIR SINE MIR 7 186 -76 2643 107 12 22 chr13 41531136 41531538 -78213360 + L1PA16 LINE L1 5760 6157 -9 814 255 29 31 chr13 41531719 41532142 -78212756 + L1ME3A LINE L1 5721 6131 -31 273 330 126 51 chr13 41533492 41533733 -78211165 + L2 LINE L2 2288 2510 -762 1992 117 125 67 chr13 41533733 41534134 -78210764 + MSTA LTR MaLR 1 424 -4 273 330 126 51 chr13 41534134 41534742 -78210156 + L2 LINE L2 2510 3223 -49 1017 251 5 0 chr13 41534839 41535062 -78209836 + MER58A DNA MER1_type 1 224 0 708 252 105 55 chr13 41535301 41535778 -78209120 + MLT1J LTR MaLR 5 505 -6 2265 179 44 72 chr13 41537220 41537790 -78207108 + MLT2B3 LTR ERVL 1 554 0 191 266 25 76 chr13 41538164 41538243 -78206655 + MIR SINE MIR 108 182 -80 344 300 130 20 chr13 41538774 41538974 -78205924 - MIR SINE MIR -18 244 23 682 258 51 23 chr13 41538990 41539207 -78205691 + MIR SINE MIR 40 262 0 323 365 60 16 chr13 41539230 41539545 -78205353 + L2 LINE L2 2153 2481 -833 26 30 0 0 chr13 41539660 41539693 -78205205 + AT_rich Low_complexity Low_complexity 1 33 0 668 211 0 12 chr13 41539693 41539854 -78205044 - MER96B DNA MER1_type? -258 159 1 1789 167 48 14 chr13 41540380 41540733 -78204165 + MLT1A1 LTR MaLR 1 365 0 2133 125 0 26 chr13 41541006 41541319 -78203579 + AluSx SINE Alu 1 305 -7 271 315 12 12 chr13 41542239 41542356 -78202542 + MIR SINE MIR 3 120 -88 1649 136 0 12 chr13 41543430 41543680 -78201218 - AluJo SINE Alu -21 291 45 2208 128 126 5 chr13 41544437 41544819 -78200079 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr13 41544912 41544941 -78199957 + AT_rich Low_complexity Low_complexity 1 29 0 180 176 0 0 chr13 41545417 41545451 -78199447 + (CATA)n Simple_repeat Simple_repeat 2 35 0 281 317 113 36 chr13 41545514 41545735 -78199163 + L2 LINE L2 2811 3048 -224 254 71 0 24 chr13 41545978 41546020 -78198878 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 227 196 22 0 chr13 41547148 41547194 -78197704 - MIR SINE MIR -114 148 102 549 224 82 20 chr13 41547395 41547542 -78197356 + MIR SINE MIR 3 158 -104 285 239 228 58 chr13 41548306 41548661 -78196237 - MLT1L LTR MaLR -138 477 1 998 150 0 0 chr13 41548808 41548955 -78195943 + AluSq SINE Alu 151 297 -16 377 336 8 16 chr13 41549005 41549140 -78195758 - MIR3 SINE MIR -31 177 43 1849 113 77 39 chr13 41549214 41549551 -78195347 - THE1B LTR MaLR -12 352 3 11805 92 5 4 chr13 41549553 41551132 -78193766 - THE1B-int LTR MaLR 0 1580 1 2134 118 29 31 chr13 41551132 41551481 -78193417 - THE1B LTR MaLR 0 364 17 426 347 58 11 chr13 41551660 41551850 -78193048 + MIR SINE MIR 57 255 -7 25 51 0 0 chr13 41552578 41552617 -78192281 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr13 41552722 41552750 -78192148 + AT_rich Low_complexity Low_complexity 1 28 0 414 248 169 23 chr13 41553252 41553554 -78191344 + L1MEc LINE L1 797 1142 -5254 723 256 24 71 chr13 41553636 41554386 -78190512 + L1ME LINE L1 710 1462 -4848 897 45 18 0 chr13 41554774 41554885 -78190013 - L1PA10 LINE L1 -4 6164 6052 728 286 67 37 chr13 41554995 41555666 -78189232 - L1M4 LINE L1 -1703 4443 3753 270 0 0 0 chr13 41555902 41555932 -78188966 + (T)n Simple_repeat Simple_repeat 1 30 0 365 276 76 11 chr13 41557536 41557721 -78187177 - L1M3 LINE L1 -718 5450 5254 346 305 41 7 chr13 41557980 41558272 -78186626 + L1ME LINE L1 4291 4592 -1537 229 254 106 7 chr13 41558902 41559044 -78185854 + L1ME LINE L1 5275 5430 -719 1182 90 145 47 chr13 41559335 41559569 -78185329 + MLT1B LTR MaLR 1 257 -133 830 150 90 6 chr13 41559732 41559899 -78184999 + MLT1B LTR MaLR 210 390 0 884 252 32 5 chr13 41559922 41560140 -78184758 - MER58A DNA MER1_type 0 224 1 1872 261 173 28 chr13 41560586 41561629 -78183269 + L2 LINE L2 2115 3313 0 848 285 21 0 chr13 41561713 41561948 -78182950 + MIR SINE MIR 21 260 -2 502 276 83 7 chr13 41562842 41562987 -78181911 - L2 LINE L2 -8 3264 3109 2490 112 22 0 chr13 41563142 41563498 -78181400 + THE1B LTR MaLR 1 364 0 216 196 20 0 chr13 41563620 41563671 -78181227 + L2 LINE L2 3262 3313 0 380 233 58 10 chr13 41565003 41565106 -78179792 - MIR SINE MIR -50 212 105 852 196 63 23 chr13 41565108 41565532 -78179366 + MLT1D LTR MaLR 1 505 0 258 289 21 91 chr13 41565597 41565784 -78179114 - MIR SINE MIR -17 245 72 237 163 0 0 chr13 41567085 41567134 -78177764 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 270 143 0 0 chr13 41567271 41567313 -78177585 + 5S rRNA rRNA 1 42 -79 186 43 0 0 chr13 41567379 41567402 -78177496 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1597 160 21 42 chr13 41567405 41567693 -78177205 - AluJo SINE Alu -30 282 1 2295 106 3 0 chr13 41567852 41568163 -78176735 + AluSx SINE Alu 1 312 0 324 0 0 0 chr13 41568170 41568206 -78176692 + (TA)n Simple_repeat Simple_repeat 2 37 0 1775 149 0 0 chr13 41570738 41571006 -78173892 + AluSx SINE Alu 38 305 -7 282 260 0 27 chr13 41571018 41571091 -78173807 - MER5A DNA MER1_type -24 165 95 782 301 45 4 chr13 41571718 41571964 -78172934 + MIR SINE MIR 7 262 0 387 0 0 0 chr13 41572943 41572986 -78171912 + (TG)n Simple_repeat Simple_repeat 2 44 0 198 405 24 0 chr13 41573094 41573178 -78171720 - L2 LINE L2 -608 2706 2621 1912 160 7 3 chr13 41573458 41573751 -78171147 + AluJb SINE Alu 1 294 -18 330 115 0 0 chr13 41573753 41573805 -78171093 + (TG)n Simple_repeat Simple_repeat 1 52 0 413 291 17 51 chr13 41574781 41574939 -78169959 + MIR SINE MIR 20 172 -61 31 0 0 0 chr13 41575154 41575185 -78169713 + AT_rich Low_complexity Low_complexity 1 31 0 2123 109 10 3 chr13 41575195 41575489 -78169409 + AluSx SINE Alu 1 296 -16 2018 114 3 20 chr13 41575573 41575871 -78169027 + AluSq SINE Alu 1 293 -20 504 287 117 24 chr13 41575878 41576341 -78168557 + L1M4 LINE L1 2318 2823 -3323 384 293 64 80 chr13 41576673 41576984 -78167914 - L1M4 LINE L1 -1300 4846 4541 911 298 111 17 chr13 41577385 41577989 -78166909 - L1M4 LINE L1 -1830 4316 3656 2202 187 44 67 chr13 41578203 41578678 -78166220 + MLT2C2 LTR ERVL 1 464 0 219 238 0 0 chr13 41579330 41579372 -78165526 + (CA)n Simple_repeat Simple_repeat 1 42 0 307 219 41 27 chr13 41579557 41579630 -78165268 + MIR SINE MIR 76 149 -113 2120 183 119 28 chr13 41581595 41582097 -78162801 - Charlie1a DNA MER1_type -907 548 1 1285 230 138 17 chr13 41582324 41582729 -78162169 - MLT1C LTR MaLR 0 467 14 1287 262 58 38 chr13 41582905 41583355 -78161543 - L1ME1 LINE L1 -5 6161 5703 305 343 38 9 chr13 41583500 41583713 -78161185 + L1ME LINE L1 5544 5762 -359 2366 253 35 16 chr13 41584171 41584847 -78160051 + L1ME3A LINE L1 5473 6161 -9 1375 267 34 59 chr13 41585702 41586298 -78158600 + L1MC5 LINE L1 6676 7255 -733 1202 246 62 26 chr13 41586415 41586915 -78157983 + L1MC5 LINE L1 7260 7777 -184 336 296 83 15 chr13 41587665 41587797 -78157101 + MIR SINE MIR 20 160 -102 1705 185 3 7 chr13 41588144 41588441 -78156457 + AluJo SINE Alu 1 296 -16 1449 206 18 83 chr13 41588516 41588683 -78156215 + MLT1A2 LTR MaLR 1 177 -197 16681 28 1 0 chr13 41588683 41591308 -78153590 + L1PA3 LINE L1 3528 6155 0 1449 206 18 83 chr13 41591308 41591537 -78153361 + MLT1A2 LTR MaLR 177 371 -3 186 337 36 24 chr13 41591626 41591709 -78153189 + MIR SINE MIR 64 147 -61 187 320 13 13 chr13 41591761 41591836 -78153062 + MIR SINE MIR 172 246 -16 254 300 108 31 chr13 41591859 41591989 -78152909 + L2 LINE L2 3169 3308 -5 24 0 0 0 chr13 41592296 41592320 -78152578 + AT_rich Low_complexity Low_complexity 1 24 0 205 322 89 0 chr13 41593354 41593444 -78151454 - L2 LINE L2 -528 2786 2689 348 333 68 10 chr13 41593760 41593967 -78150931 + L1MEd LINE L1 264 482 -5637 545 292 55 41 chr13 41594105 41594595 -78150303 + L1MEd LINE L1 654 1150 -4969 2565 52 0 0 chr13 41594637 41594942 -78149956 + AluY SINE Alu 1 305 -6 863 136 0 45 chr13 41595104 41595236 -78149662 + FLAM_C SINE Alu 1 126 -7 22 0 0 0 chr13 41595236 41595258 -78149640 + AT_rich Low_complexity Low_complexity 1 22 0 196 209 0 90 chr13 41595542 41595609 -78149289 - MIR3 SINE MIR -133 75 15 667 240 31 10 chr13 41596417 41596609 -78148289 + LTR16A LTR ERVL 25 220 -230 1938 170 58 33 chr13 41596663 41597204 -78147694 + MLT2A2 LTR ERVL 1 554 0 554 196 45 0 chr13 41597204 41597333 -78147565 + LTR16A LTR ERVL 306 440 -10 1939 159 3 0 chr13 41597366 41597668 -78147230 - AluJo SINE Alu -8 304 2 552 145 0 12 chr13 41597851 41597934 -78146964 + AluJb SINE Alu 172 253 -59 421 238 157 0 chr13 41597969 41598116 -78146782 + LTR16A LTR ERVL 281 450 0 3743 55 0 7 chr13 41598515 41598966 -78145932 - LTR7 LTR ERV1 -2 448 1 2526 81 45 16 chr13 41598966 41599347 -78145551 - HERVH LTR ERV1 0 7713 7322 1364 119 18 44 chr13 41599345 41599571 -78145327 - HERVH LTR ERV1 -1894 5819 5600 * 2458 173 15 0 chr13 41599572 41599976 -78144922 - HERVH LTR ERV1 -2564 5149 4740 1011 143 0 7 chr13 41599975 41600129 -78144769 - HERVH LTR ERV1 -4069 3644 3492 * 871 124 41 0 chr13 41600119 41600264 -78144634 - HERVH LTR ERV1 -4423 3290 3140 * 15769 88 12 16 chr13 41600243 41602510 -78142388 - HERVH LTR ERV1 -4718 2995 739 19073 90 26 15 chr13 41602690 41605473 -78139425 - HERVH LTR ERV1 -4898 2815 1 3701 53 0 11 chr13 41605475 41605928 -78138970 - LTR7 LTR ERV1 -2 448 1 1102 215 42 106 chr13 41606298 41606885 -78138013 + MER39 LTR ERV1 1 684 0 528 279 13 6 chr13 41607589 41607747 -78137151 - MER114 LTR ERV 0 648 490 315 204 0 0 chr13 41608179 41608233 -78136665 - MER94 DNA DNA -72 62 9 5036 156 34 37 chr13 41608233 41609155 -78135743 - MER49 LTR ERV1 0 923 5 181 235 101 128 chr13 41609305 41609454 -78135444 + MER5B DNA MER1_type 6 150 -28 333 303 92 41 chr13 41609493 41609688 -78135210 - L3 LINE CR1 -195 1382 1178 347 265 37 52 chr13 41609709 41609845 -78135053 + L3 LINE CR1 822 955 -622 487 211 64 9 chr13 41610272 41610381 -78134517 + L2 LINE L2 3173 3287 -26 1161 123 41 10 chr13 41610382 41610577 -78134321 - MER67C LTR ERV1 -3 707 507 734 249 34 15 chr13 41610587 41610792 -78134106 - MER67C LTR ERV1 -379 331 123 2391 53 7 10 chr13 41610794 41611095 -78133803 - AluY SINE Alu -11 300 1 280 192 39 0 chr13 41611344 41611422 -78133476 + GA-rich Low_complexity Low_complexity 4 84 0 4295 142 31 46 chr13 41611675 41612249 -78132649 - LTR8A LTR ERV1 0 727 165 2305 84 7 0 chr13 41612249 41612557 -78132341 - AluY SINE Alu 0 311 2 4295 142 31 46 chr13 41612557 41612720 -78132178 - LTR8A LTR ERV1 -562 165 1 191 322 0 0 chr13 41613922 41613981 -78130917 - MIR SINE MIR -140 122 64 282 56 0 0 chr13 41614333 41614369 -78130529 + (TC)n Simple_repeat Simple_repeat 1 36 0 333 0 0 0 chr13 41614369 41614406 -78130492 + (TG)n Simple_repeat Simple_repeat 2 38 0 1884 161 154 15 chr13 41614406 41614796 -78130102 - LTR47A LTR ERVL -3 449 6 583 197 43 0 chr13 41614947 41615064 -78129834 - L2 LINE L2 0 3313 3192 238 319 34 88 chr13 41615377 41615581 -78129317 + L2 LINE L2 2554 2746 -568 270 0 0 0 chr13 41615672 41615702 -78129196 + (TC)n Simple_repeat Simple_repeat 2 31 0 261 0 0 0 chr13 41615701 41615730 -78129168 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 266 238 24 36 chr13 41615753 41615837 -78129061 + L2 LINE L2 3181 3263 -9 496 271 18 60 chr13 41615938 41616104 -78128794 + MLT1I LTR MaLR 11 169 -240 3877 135 56 32 chr13 41617720 41617858 -78127040 - MER50 LTR ERV1 -23 711 578 2314 91 7 0 chr13 41617858 41618155 -78126743 + AluSp SINE Alu 1 299 -14 3877 135 56 32 chr13 41618155 41618613 -78126285 - MER50 LTR ERV1 -156 578 93 2274 107 0 13 chr13 41618613 41618923 -78125975 + AluSx SINE Alu 1 306 -6 3877 135 56 32 chr13 41618923 41619019 -78125879 - MER50 LTR ERV1 -641 93 1 26 30 0 0 chr13 41622006 41622039 -78122859 + AT_rich Low_complexity Low_complexity 1 33 0 268 300 130 10 chr13 41622492 41622785 -78122113 - L1 LINE L1 -945 5201 4874 308 275 131 31 chr13 41622972 41623045 -78121853 - L1 LINE L1 -1612 4534 4470 2408 77 0 3 chr13 41623045 41623357 -78121541 - AluY SINE Alu 0 311 1 308 275 131 31 chr13 41623357 41624132 -78120766 - L1 LINE L1 -1676 4470 3502 602 214 14 50 chr13 41624159 41624299 -78120599 - L1MC/D LINE L1 -2249 5559 5425 3328 267 113 46 chr13 41624492 41626222 -78118676 - L2 LINE L2 -24 3289 1388 23 0 0 0 chr13 41628469 41628492 -78116406 + AT_rich Low_complexity Low_complexity 1 23 0 234 318 218 0 chr13 41629243 41629413 -78115485 + L2 LINE L2 2481 2687 -627 593 328 92 48 chr13 41629759 41630047 -78114851 + L2 LINE L2 2579 2853 -460 2035 132 21 0 chr13 41630047 41630336 -78114562 + AluSx SINE Alu 6 300 -12 593 328 92 48 chr13 41630336 41630733 -78114165 + L2 LINE L2 2853 3308 -5 2325 113 0 0 chr13 41632134 41632445 -78112453 + AluSx SINE Alu 1 311 -1 2971 3 0 3 chr13 41634985 41635319 -78109579 - L1PA3 LINE L1 -1 6154 5822 492 214 42 88 chr13 41635628 41635843 -78109055 - HAL1 LINE L1 -2299 208 4 291 336 19 37 chr13 41635960 41636067 -78108831 - MIR SINE MIR -62 146 42 1271 82 146 10 chr13 41636587 41636793 -78108105 + L1PA11 LINE L1 5941 6174 0 484 276 33 26 chr13 41637201 41637353 -78107545 - L2 LINE L2 0 3313 3161 288 247 95 21 chr13 41637478 41637668 -78107230 + L1MC4a LINE L1 5292 5495 -2313 428 296 86 57 chr13 41637753 41638135 -78106763 + L1MC4a LINE L1 5659 6023 -98 1208 177 23 19 chr13 41640064 41640330 -78104568 - L1MA6 LINE L1 0 6300 6034 303 301 193 39 chr13 41640482 41640814 -78104084 - L1ME4a LINE L1 -224 5897 5515 5234 132 25 63 chr13 41641088 41641422 -78103476 + L1MA8 LINE L1 4752 5097 -1194 1950 161 6 3 chr13 41641422 41641733 -78103165 + AluSx SINE Alu 1 312 0 5234 132 25 63 chr13 41641733 41642019 -78102879 + L1MA8 LINE L1 5097 5393 -898 2069 111 3 41 chr13 41642019 41642334 -78102564 + AluSq SINE Alu 1 303 -10 5234 132 25 63 chr13 41642334 41643306 -78101592 + L1MA8 LINE L1 5393 6285 -6 2155 115 27 0 chr13 41643475 41643771 -78101127 - AluSq SINE Alu -9 304 1 451 316 108 53 chr13 41644013 41644428 -78100470 - L1ME4a LINE L1 -2009 4137 3700 210 71 0 0 chr13 41644433 41644461 -78100437 + (GA)n Simple_repeat Simple_repeat 1 28 0 189 0 0 0 chr13 41644461 41644482 -78100416 + (TG)n Simple_repeat Simple_repeat 1 21 0 189 0 0 0 chr13 41644861 41644882 -78100016 + (TG)n Simple_repeat Simple_repeat 1 21 0 273 294 99 17 chr13 41645155 41645448 -78099450 - L1ME4a LINE L1 -2709 3437 3121 763 268 105 88 chr13 41646141 41646724 -78098174 + HAL1 LINE L1 844 1436 -1071 467 294 86 47 chr13 41646767 41647101 -78097797 + L1MEc LINE L1 2182 2481 -3734 451 281 26 7 chr13 41647114 41647267 -78097631 - MLT1L LTR MaLR -367 248 93 1983 144 144 8 chr13 41647395 41647769 -78097129 + MSTA LTR MaLR 4 428 0 474 299 27 27 chr13 41647847 41647994 -78096904 + L2 LINE L2 3167 3313 0 225 179 0 0 chr13 41648683 41648722 -78096176 + L2 LINE L2 3274 3312 -1 2237 108 3 3 chr13 41648866 41649161 -78095737 + AluSx SINE Alu 1 295 -17 24 0 0 0 chr13 41649879 41649903 -78094995 + AT_rich Low_complexity Low_complexity 1 24 0 286 304 43 14 chr13 41650527 41650665 -78094233 - MARNA DNA Mariner -14 572 431 183 233 0 23 chr13 41651352 41651395 -78093503 + MIR SINE MIR 219 260 -2 289 202 0 24 chr13 41652544 41652628 -78092270 + GA-rich Low_complexity Low_complexity 4 85 0 235 426 59 34 chr13 41653196 41653433 -78091465 - L2 LINE L2 -87 3185 2943 1571 178 146 26 chr13 41653434 41653851 -78091047 - MLT1C LTR MaLR 0 467 1 376 343 83 44 chr13 41654005 41654416 -78090482 + HAL1 LINE L1 164 590 -1917 1663 270 91 26 chr13 41654548 41655220 -78089678 + HAL1 LINE L1 1088 1818 -689 830 192 66 0 chr13 41655220 41655387 -78089511 + MER5B DNA MER1_type 1 178 0 1663 270 91 26 chr13 41655387 41655480 -78089418 + HAL1 LINE L1 1818 1903 -604 1401 196 161 7 chr13 41655842 41656271 -78088627 + MLT1D LTR MaLR 2 496 -9 254 83 42 62 chr13 41656512 41656560 -78088338 - MER5A DNA MER1_type -84 105 59 1986 154 0 0 chr13 41656883 41657188 -78087710 + AluJb SINE Alu 1 305 -7 26 30 0 0 chr13 41657530 41657563 -78087335 + AT_rich Low_complexity Low_complexity 1 33 0 518 374 74 12 chr13 41657725 41658062 -78086836 + L3 LINE CR1 438 795 -782 316 389 42 27 chr13 41658590 41658922 -78085976 + L2 LINE L2 2418 2754 -560 389 264 50 0 chr13 41659048 41659169 -78085729 + MER20B DNA MER1_type 53 179 -604 426 183 0 0 chr13 41659601 41659716 -78085182 + (TGGA)n Simple_repeat Simple_repeat 4 118 0 354 23 0 0 chr13 41660942 41660985 -78083913 + (CA)n Simple_repeat Simple_repeat 2 44 0 841 269 59 20 chr13 41662655 41662960 -78081938 + MLT1J1 LTR MaLR 1 317 -129 1608 233 32 15 chr13 41663058 41663579 -78081319 + MER90 LTR ERV1 8 614 0 214 263 128 38 chr13 41663882 41664015 -78080883 + MER5A DNA MER1_type 14 158 -31 * 415 290 57 8 chr13 41663896 41664020 -78080878 - MER5A DNA MER1_type -22 167 38 230 278 0 0 chr13 41664265 41664319 -78080579 - L2 LINE L2 0 3272 3219 529 250 64 70 chr13 41664863 41665147 -78079751 + MLT1J2 LTR MaLR 4 290 -156 2819 6 3 3 chr13 41665147 41665460 -78079438 - AluYb8 SINE Alu -5 313 1 529 250 64 70 chr13 41665460 41665582 -78079316 + MLT1J2 LTR MaLR 290 411 -35 314 266 90 11 chr13 41665632 41665809 -78079089 - L1MC4a LINE L1 -1891 5917 5727 1532 170 115 0 chr13 41665918 41666188 -78078710 - AluJo SINE Alu -11 301 1 2639 210 42 25 chr13 41666551 41667266 -78077632 + L1MC4a LINE L1 7082 7808 0 180 0 0 0 chr13 41667268 41667288 -78077610 + (A)n Simple_repeat Simple_repeat 1 20 0 593 340 57 20 chr13 41667295 41667592 -78077306 + L2 LINE L2 336 643 -2671 2194 311 116 48 chr13 41668787 41669395 -78075503 + L2 LINE L2 692 1257 -2057 2251 120 3 3 chr13 41669395 41669704 -78075194 - AluSq SINE Alu -4 309 1 2194 311 116 48 chr13 41669704 41670824 -78074074 + L2 LINE L2 1257 2537 -777 12624 116 32 92 chr13 41670829 41672443 -78072455 - Tigger1 DNA MER2_type -1 2417 1015 2333 93 0 3 chr13 41672443 41672744 -78072154 + AluSx SINE Alu 1 300 -12 12624 116 32 92 chr13 41672744 41673702 -78071196 - Tigger1 DNA MER2_type -1403 1015 1 520 337 96 44 chr13 41673703 41674368 -78070530 + L2 LINE L2 2552 3288 -25 963 119 7 20 chr13 41674396 41674547 -78070351 - FRAM SINE Alu -25 151 3 314 319 122 16 chr13 41674682 41674936 -78069962 - L1MC4a LINE L1 -777 5369 5089 902 207 29 0 chr13 41675278 41675452 -78069446 + AluJb SINE Alu 129 307 -5 356 317 129 54 chr13 41675485 41676113 -78068785 - L1MC4a LINE L1 -3324 2822 2148 2918 16 0 0 chr13 41676481 41676799 -78068099 - AluYb8 SINE Alu 0 318 1 360 324 122 38 chr13 41677191 41677404 -78067494 - MIR SINE MIR -11 251 21 7076 57 5 0 chr13 41677545 41678492 -78066406 + L1PA7 LINE L1 5203 6153 -1 2300 167 29 18 chr13 41678497 41678874 -78066024 + MER90 LTR ERV1 75 459 -155 2549 106 0 11 chr13 41678874 41679241 -78065657 - THE1B LTR MaLR -1 363 1 2300 167 29 18 chr13 41679241 41679311 -78065587 + MER90 LTR ERV1 459 527 -87 1611 131 8 17 chr13 41680579 41680816 -78064082 + MER1B DNA MER1_type 105 339 0 5901 206 65 32 chr13 41680816 41682221 -78062677 + MER109 Unknown Unknown 980 2430 -2 276 79 16 32 chr13 41682234 41682297 -78062601 + (TTTTTG)n Simple_repeat Simple_repeat 2 63 0 2121 151 99 14 chr13 41682538 41682970 -78061928 + MER4D LTR ERV1 1 469 -434 2146 117 3 7 chr13 41682979 41683287 -78061611 + AluSx SINE Alu 3 309 -3 2130 143 0 0 chr13 41684543 41684843 -78060055 + AluSx SINE Alu 1 300 -12 207 360 88 0 chr13 41685383 41685519 -78059379 - L3b LINE CR1 -117 1466 1319 1677 86 3 162 chr13 41685541 41685880 -78059018 + LTR12 LTR ERV1 1 285 -429 328 253 11 0 chr13 41685880 41685971 -78058927 + LTR30 LTR ERV1 552 643 -79 706 120 0 0 chr13 41685973 41686073 -78058825 + LTR12 LTR ERV1 615 714 0 190 320 230 11 chr13 41686820 41686998 -78057900 - MIR SINE MIR -12 250 34 22 0 0 0 chr13 41688040 41688062 -78056836 + AT_rich Low_complexity Low_complexity 1 22 0 2317 113 0 0 chr13 41689188 41689498 -78055400 + AluSq SINE Alu 1 310 -3 347 349 55 0 chr13 41689614 41689723 -78055175 - L2 LINE L2 -22 3250 3136 397 354 29 23 chr13 41690114 41690289 -78054609 + MER91A DNA MER1_type 1 176 -20 248 337 109 0 chr13 41690292 41690384 -78054514 + MER91A DNA MER1_type 95 196 0 235 368 173 32 chr13 41690449 41691133 -78053765 - L2 LINE L2 -406 2908 2129 29 21 0 21 chr13 41691220 41691250 -78053648 + AT_rich Low_complexity Low_complexity 1 31 -15 1792 165 7 0 chr13 41691250 41691541 -78053357 - AluJb SINE Alu -19 293 1 29 21 0 21 chr13 41691541 41691557 -78053341 + AT_rich Low_complexity Low_complexity 31 46 0 731 215 0 0 chr13 41691608 41691738 -78053160 - FLAM_C SINE Alu -2 131 2 498 259 67 0 chr13 41692733 41692868 -78052030 - MIR SINE MIR -14 248 105 2512 176 32 36 chr13 41693604 41694110 -78050788 - MLT1D LTR MaLR -1 504 1 341 321 15 36 chr13 41694264 41694401 -78050497 + MER63 DNA MER1_type 1 760 -76 673 243 151 0 chr13 41695263 41695415 -78049483 - MER5A DNA MER1_type -3 186 12 1868 135 13 48 chr13 41695547 41695859 -78049039 + AluJb SINE Alu 1 301 -11 202 222 22 0 chr13 41696176 41696221 -78048677 + GA-rich Low_complexity Low_complexity 1 46 0 253 216 27 27 chr13 41696587 41696661 -78048237 + (TCTCTG)n Simple_repeat Simple_repeat 5 78 0 209 33 33 0 chr13 41696661 41696691 -78048207 + (TG)n Simple_repeat Simple_repeat 2 32 0 938 7 20 61 chr13 41698734 41698882 -78046016 + (TCTCCC)n Simple_repeat Simple_repeat 1 142 0 6820 53 35 31 chr13 41698882 41700363 -78044535 + SVA Other Other 57 1386 0 405 0 0 0 chr13 41701982 41702027 -78042871 + (CA)n Simple_repeat Simple_repeat 2 46 0 356 225 63 36 chr13 41704369 41704480 -78040418 + L2 LINE L2 3154 3267 -5 721 211 133 0 chr13 41705309 41705475 -78039423 - MER5A DNA MER1_type 0 189 2 33 25 0 0 chr13 41705920 41705960 -78038938 + AT_rich Low_complexity Low_complexity 1 40 0 2345 112 0 3 chr13 41707125 41707437 -78037461 + AluSx SINE Alu 1 311 -1 2594 37 0 7 chr13 41707446 41707745 -78037153 + AluY SINE Alu 1 297 -14 412 351 104 13 chr13 41708679 41708833 -78036065 - MER91A DNA MER1_type -28 168 1 1466 218 85 19 chr13 41709102 41709478 -78035420 - LTR40c LTR ERVL 0 465 65 307 248 110 35 chr13 41710069 41710214 -78034684 - L1ME4a LINE L1 -4 6117 5962 321 254 189 30 chr13 41710216 41710417 -78034481 - L1ME4a LINE L1 -187 5934 5702 671 280 54 88 chr13 41710640 41710994 -78033904 + MLT1J LTR MaLR 25 366 -145 360 342 111 0 chr13 41711034 41711151 -78033747 + MIR SINE MIR 43 172 -90 1799 124 159 90 chr13 41711160 41711211 -78033687 - MER4A LTR ERV1 0 664 618 2469 60 0 10 chr13 41711211 41711511 -78033387 + AluY SINE Alu 1 297 -14 1799 124 159 90 chr13 41711511 41711837 -78033061 - MER4A LTR ERV1 -46 618 261 611 111 10 20 chr13 41711837 41711936 -78032962 - MER4A LTR ERV1 -566 98 1 286 176 0 20 chr13 41711999 41712050 -78032848 + MLT1J LTR MaLR 388 437 -74 236 246 0 14 chr13 41712446 41712515 -78032383 - L1ME3A LINE L1 -3 6167 6100 2432 61 0 22 chr13 41712643 41712955 -78031943 + AluY SINE Alu 5 309 -2 1141 251 105 33 chr13 41712955 41713506 -78031392 - L1MC4 LINE L1 -10 8032 7442 774 214 109 50 chr13 41713864 41714102 -78030796 - MER112 DNA MER1_type -1 259 8 4213 98 7 0 chr13 41714166 41714716 -78030182 + MER41A LTR ERV1 1 554 0 1830 217 50 37 chr13 41714832 41715345 -78029553 + MER39 LTR ERV1 1 700 -7 2466 90 0 0 chr13 41715437 41715747 -78029151 + AluSg SINE Alu 1 310 0 341 318 47 8 chr13 41715809 41715938 -78028960 + MIR SINE MIR 10 143 -119 842 270 35 45 chr13 41717288 41717441 -78027457 - LTR16B LTR ERVL 0 464 311 2228 140 89 29 chr13 41717441 41717855 -78027043 - MER65A LTR ERV1 -4 441 3 842 270 35 45 chr13 41717855 41718005 -78026893 - LTR16B LTR ERVL -153 311 164 385 294 98 7 chr13 41718005 41718148 -78026750 + LTR26 LTR ERV1 1 156 -447 951 196 22 45 chr13 41718159 41718383 -78026515 + LTR26 LTR ERV1 385 603 0 318 255 41 69 chr13 41718383 41718515 -78026383 - LTR16B LTR ERVL -303 161 34 2034 224 82 84 chr13 41718576 41718775 -78026123 + MER21B LTR ERV1 1 199 -664 2439 94 0 7 chr13 41718775 41719084 -78025814 + AluSg SINE Alu 1 307 -3 2034 224 82 84 chr13 41719084 41719624 -78025274 + MER21B LTR ERV1 199 739 -124 244 316 129 58 chr13 41719678 41719773 -78025125 + L2 LINE L2 2991 3078 -194 1448 110 48 40 chr13 41719773 41720001 -78024897 - MER30 DNA MER1_type 0 230 1 244 316 129 58 chr13 41720001 41720076 -78024822 + L2 LINE L2 3078 3173 -99 2216 117 0 0 chr13 41720763 41721061 -78023837 + AluSg SINE Alu 1 298 -12 1203 201 39 42 chr13 41721163 41721473 -78023425 - AluJo SINE Alu 0 309 1 474 286 97 19 chr13 41721598 41721752 -78023146 - MIR SINE MIR -89 173 8 186 43 0 0 chr13 41721873 41721896 -78023002 + (T)n Simple_repeat Simple_repeat 1 23 0 2573 59 0 0 chr13 41721898 41722205 -78022693 - AluY SINE Alu -4 307 1 185 35 69 0 chr13 41723590 41723619 -78021279 + T-rich Low_complexity Low_complexity 1 31 0 2128 91 4 0 chr13 41723623 41723897 -78021001 - AluSx SINE Alu -37 275 1 301 242 80 37 chr13 41725178 41725325 -78019573 - MER5B DNA MER1_type -18 171 4 189 307 70 53 chr13 41725325 41725409 -78019489 - L2 LINE L2 -66 3247 3162 247 206 32 48 chr13 41725854 41725917 -78018981 - MER5A DNA MER1_type 0 189 128 789 151 0 8 chr13 41725921 41726040 -78018858 + AluSq/x SINE Alu 2 119 -194 259 59 0 0 chr13 41726040 41726074 -78018824 + Alu SINE Alu 256 289 -13 662 170 28 0 chr13 41726083 41726189 -78018709 - MER5A DNA MER1_type -80 109 1 202 335 86 46 chr13 41726202 41726354 -78018544 - L2 LINE L2 -559 2755 2598 843 146 0 0 chr13 41726412 41726535 -78018363 + AluJb SINE Alu 1 123 -189 245 311 9 38 chr13 41726662 41726768 -78018130 + MIR3 SINE MIR 62 164 -44 1145 228 5 5 chr13 41726776 41726995 -78017903 + MER20 DNA MER1_type 1 219 0 2498 70 0 0 chr13 41727567 41727868 -78017030 + AluY SINE Alu 1 301 -10 2364 88 0 0 chr13 41729230 41729524 -78015374 - AluSg SINE Alu -16 294 1 1549 138 270 9 chr13 41729548 41729881 -78015017 + LTR29 LTR ERV1 1 420 -202 755 189 37 18 chr13 41729879 41730043 -78014855 + LTR49 LTR ERV1 416 582 -13 * 652 256 134 59 chr13 41730159 41730524 -78014374 - LTR38B LTR ERV1 0 611 184 2256 102 0 25 chr13 41730524 41730838 -78014060 - AluSg SINE Alu -4 306 1 652 256 134 59 chr13 41730838 41730972 -78013926 - LTR38B LTR ERV1 -427 184 61 2079 191 43 41 chr13 41730999 41731461 -78013437 - MLT1C LTR MaLR -1 466 4 4038 171 66 159 chr13 41731477 41731550 -78013348 - L1MC4 LINE L1 -140 7902 7824 1494 156 114 35 chr13 41731550 41731839 -78013059 - AluSx SINE Alu 0 312 1 4038 171 66 159 chr13 41731839 41732730 -78012168 - L1MC4 LINE L1 -218 7824 6948 915 107 7 53 chr13 41732730 41732880 -78012018 - FLAM_C SINE Alu 0 143 1 4038 171 66 159 chr13 41732880 41733190 -78011708 - L1MC4 LINE L1 -1094 6948 6611 2003 215 113 21 chr13 41733212 41733797 -78011101 + MLT1E2 LTR MaLR 1 626 0 469 221 89 0 chr13 41733798 41733946 -78010952 - L1MC4 LINE L1 -1198 6610 6443 2140 97 3 10 chr13 41734292 41734590 -78010308 + AluSx SINE Alu 1 296 -16 1507 168 58 24 chr13 41734662 41734954 -78009944 - AluJo SINE Alu -8 304 3 2175 132 0 0 chr13 41734966 41735269 -78009629 - AluSg SINE Alu -7 303 1 935 241 61 67 chr13 41735486 41735814 -78009084 - MSTD LTR MaLR 0 396 40 181 385 12 0 chr13 41736014 41736097 -78008801 - L2 LINE L2 -5 3267 3184 313 325 51 17 chr13 41736129 41736246 -78008652 - MIR3 SINE MIR -54 154 34 2107 133 0 13 chr13 41736968 41737270 -78007628 - AluSx SINE Alu -14 298 1 387 322 7 34 chr13 41737436 41737585 -78007313 + MIR SINE MIR 20 164 -98 2330 100 3 0 chr13 41737797 41738107 -78006791 - AluSx SINE Alu 0 312 2 596 100 0 0 chr13 41738496 41738576 -78006322 - MADE1 DNA Mariner 0 80 1 2455 158 28 125 chr13 41738704 41739344 -78005554 + MER70B LTR ERVL 1 578 0 696 238 62 33 chr13 41739388 41739598 -78005300 + MIR SINE MIR 47 262 0 1524 244 74 17 chr13 41739627 41740086 -78004812 + L1ME LINE L1 5324 5808 -362 890 316 104 13 chr13 41740203 41740577 -78004321 - MLT1J LTR MaLR -3 508 101 468 259 0 37 chr13 41740595 41740703 -78004195 + MLT1F LTR MaLR 1 104 -438 * 813 206 111 26 chr13 41740701 41740890 -78004008 + MLT1F1 LTR MaLR 363 567 0 1717 181 0 13 chr13 41740932 41741231 -78003667 + AluJb SINE Alu 5 299 -13 2501 244 48 57 chr13 41741486 41741781 -78003117 - L2 LINE L2 -355 2959 2663 1658 185 31 69 chr13 41741781 41742170 -78002728 + MLT1A2 LTR MaLR 1 374 0 2501 244 48 57 chr13 41742170 41742687 -78002211 - L2 LINE L2 -651 2663 2154 928 196 17 0 chr13 41742984 41743157 -78001741 - MER5B DNA MER1_type 0 178 3 2351 85 0 0 chr13 41743307 41743601 -78001297 + AluSq SINE Alu 3 296 -17 2239 128 0 0 chr13 41743883 41744196 -78000702 - AluSq SINE Alu 0 313 1 234 307 0 0 chr13 41744992 41745067 -77999831 + MIR SINE MIR 65 139 -123 2478 223 45 75 chr13 41745608 41746318 -77998580 + MER21B LTR ERV1 123 811 -52 22 0 0 0 chr13 41746444 41746466 -77998432 + AT_rich Low_complexity Low_complexity 1 22 0 1990 122 0 67 chr13 41747098 41747425 -77997473 + AluSx SINE Alu 1 305 -7 228 231 103 13 chr13 41747818 41747896 -77997002 + L2 LINE L2 1876 1960 -1354 484 51 0 0 chr13 41747921 41747980 -77996918 - Alu SINE Alu -10 300 242 1094 101 0 0 chr13 41747980 41748118 -77996780 - AluSg SINE Alu -172 138 1 335 122 110 12 chr13 41748432 41748514 -77996384 - MLT1L LTR MaLR -4 611 522 322 256 86 52 chr13 41748525 41748582 -77996316 + L1MC5 LINE L1 7479 7533 -428 1914 212 20 20 chr13 41748582 41748978 -77995920 - MSTD LTR MaLR 0 396 1 322 256 86 52 chr13 41748978 41749189 -77995709 + L1MC5 LINE L1 7533 7756 -205 305 232 0 12 chr13 41749378 41749480 -77995418 + L1MC5 LINE L1 7832 8011 -31 323 251 78 42 chr13 41749501 41749668 -77995230 - MLT1L LTR MaLR -60 555 383 560 195 55 8 chr13 41749669 41749797 -77995101 - MER94 DNA DNA 0 134 1 407 369 68 28 chr13 41750103 41750428 -77994470 + L2 LINE L2 2549 2886 -428 2022 123 0 36 chr13 41750712 41750877 -77994021 - AluSq SINE Alu -20 293 142 2491 77 0 3 chr13 41750877 41751187 -77993711 - AluSg1 SINE Alu 0 309 1 2022 123 0 36 chr13 41751187 41751323 -77993575 - AluSq SINE Alu -171 142 3 394 173 15 90 chr13 41751364 41751497 -77993401 - MER106A DNA MER1_type -3 233 111 659 174 60 9 chr13 41751947 41752103 -77992795 - MIR SINE MIR 0 262 98 412 323 8 23 chr13 41752801 41752934 -77991964 + L2 LINE L2 3183 3313 0 606 180 18 9 chr13 41753337 41753448 -77991450 - MER101 LTR ERV1 0 474 363 553 128 12 0 chr13 41753437 41753523 -77991375 - MER101 LTR ERV1 -387 87 1 * 183 248 108 101 chr13 41753560 41753661 -77991237 - MIR SINE MIR -63 145 41 4680 97 16 75 chr13 41753661 41753835 -77991063 - LTR8 LTR ERV1 0 691 508 2356 79 10 3 chr13 41753835 41754140 -77990758 - AluSc SINE Alu -2 307 1 4680 97 16 75 chr13 41754140 41754697 -77990201 - LTR8 LTR ERV1 -183 508 3 183 248 108 101 chr13 41754697 41754724 -77990174 - MIR SINE MIR -167 41 16 1886 72 124 11 chr13 41755031 41755296 -77989602 + AluSg SINE Alu 1 295 -15 1214 97 103 0 chr13 41755470 41755645 -77989253 - AluSg SINE Alu -117 193 1 232 362 43 83 chr13 41756478 41756829 -77988069 - L2 LINE L2 -26 3246 2910 586 174 39 84 chr13 41756897 41756941 -77987957 - Charlie5 DNA MER1_type -5 2580 2536 2652 23 0 3 chr13 41756941 41757241 -77987657 - AluY SINE Alu -11 300 2 586 174 39 84 chr13 41757241 41757374 -77987524 - Charlie5 DNA MER1_type -49 2536 2411 1699 146 7 43 chr13 41757380 41757682 -77987216 + AluJo SINE Alu 9 299 -13 265 282 26 13 chr13 41757682 41757760 -77987138 - MIR SINE MIR -131 131 53 1919 252 54 44 chr13 41758109 41758230 -77986668 - MER20B DNA MER1_type -70 713 595 2054 129 3 0 chr13 41758230 41758524 -77986374 + AluSx SINE Alu 1 295 -17 1919 252 54 44 chr13 41758524 41759101 -77985797 - MER20B DNA MER1_type -188 595 8 243 131 16 66 chr13 41759322 41759383 -77985515 + FAM SINE Alu 121 178 -1 22 0 0 0 chr13 41759476 41759498 -77985400 + AT_rich Low_complexity Low_complexity 1 22 0 1415 80 0 0 chr13 41759722 41759898 -77985000 - L1PA11 LINE L1 0 6174 5999 2062 129 0 0 chr13 41760152 41760447 -77984451 - AluSx SINE Alu -17 295 1 394 250 58 33 chr13 41760489 41760609 -77984289 + L2 LINE L2 3191 3313 0 187 260 164 0 chr13 41761233 41761306 -77983592 + L2 LINE L2 2977 3061 -211 371 228 69 40 chr13 41761625 41761726 -77983172 + L2 LINE L2 3156 3259 -13 221 221 29 59 chr13 41762330 41762398 -77982500 + L2 LINE L2 3207 3272 0 372 266 0 0 chr13 41762810 41762889 -77982009 - MER58B DNA MER1_type 0 341 263 234 54 0 81 chr13 41762889 41762926 -77981972 + L1PA12 LINE L1 6099 6132 -36 186 316 34 60 chr13 41763075 41763192 -77981706 - L2 LINE L2 0 3313 3200 230 348 36 45 chr13 41763218 41763330 -77981568 + L2 LINE L2 3153 3263 -9 395 187 167 136 chr13 41763520 41763718 -77981180 - MER102a DNA MER1_type 0 330 127 513 274 65 60 chr13 41764081 41764296 -77980602 - MIR SINE MIR -32 230 15 1072 287 130 11 chr13 41764341 41764801 -77980097 - LTR33A LTR ERVL -7 516 2 1950 161 0 3 chr13 41815032 41815331 -77929567 + AluSx SINE Alu 2 299 -13 2166 175 21 0 chr13 41815342 41815714 -77929184 - MSTA LTR MaLR -48 380 1 992 215 10 10 chr13 41815715 41815920 -77928978 + AluJo SINE Alu 93 297 -15 2134 154 23 37 chr13 41815920 41816236 -77928662 - L1MC3 LINE L1 -150 7635 7325 2220 134 3 0 chr13 41816236 41816542 -77928356 + AluSq SINE Alu 1 307 -6 2134 154 23 37 chr13 41816542 41816659 -77928239 - L1MC3 LINE L1 -460 7325 7208 262 296 11 11 chr13 41816665 41816753 -77928145 - MLT1F1 LTR MaLR -443 124 37 265 83 0 0 chr13 41816760 41816796 -77928102 - L1MC3 LINE L1 -693 7092 7057 1234 112 0 0 chr13 41816797 41816966 -77927932 - AluY SINE Alu -5 306 138 2038 125 0 7 chr13 41817069 41817356 -77927542 - AluSx SINE Alu -27 285 1 1299 187 69 0 chr13 41817446 41817692 -77927206 - AluJo SINE Alu -15 297 35 21 36 0 0 chr13 41817888 41817916 -77926982 + AT_rich Low_complexity Low_complexity 1 28 0 2171 116 0 22 chr13 41818096 41818414 -77926484 - AluSq SINE Alu -2 311 1 4300 105 29 5 chr13 41818420 41818771 -77926127 - L1PB1 LINE L1 -1 6150 5776 252 0 0 0 chr13 41818771 41818799 -77926099 + (TG)n Simple_repeat Simple_repeat 2 29 0 4300 105 29 5 chr13 41818799 41819065 -77925833 - L1PB1 LINE L1 -375 5776 5518 835 104 0 0 chr13 41819165 41819271 -77925627 - AluSc SINE Alu -203 106 1 8862 186 23 29 chr13 41819271 41819433 -77925465 - L1PB1 LINE L1 -660 5491 5330 2184 96 10 7 chr13 41819433 41819725 -77925173 - AluSq SINE Alu -20 293 1 8862 186 23 29 chr13 41819725 41821759 -77923139 - L1PB1 LINE L1 -821 5330 3305 2448 74 39 97 chr13 41821759 41822194 -77922704 + LTR19C LTR ERV1 1 410 -369 1781 156 0 37 chr13 41822912 41823233 -77921665 - AluJo SINE Alu -3 309 1 1034 160 18 0 chr13 41823365 41823534 -77921364 - AluJb SINE Alu -3 309 138 2408 204 98 76 chr13 41823534 41824375 -77920523 - MER52A LTR ERV1 -782 973 4 493 323 72 40 chr13 41824876 41825127 -77919771 - MIR SINE MIR -2 260 2 705 285 94 18 chr13 41825138 41825478 -77919420 - L1ME4a LINE L1 -224 5897 5532 2459 87 0 0 chr13 41825717 41826026 -77918872 + AluY SINE Alu 1 309 -2 377 280 87 7 chr13 41826337 41826487 -77918411 + MIR3 SINE MIR 36 197 -11 2020 152 0 10 chr13 41826940 41827249 -77917649 + AluSx SINE Alu 1 306 -6 7284 81 18 14 chr13 41827750 41828716 -77916182 - LTR5 LTR ERVK 0 969 1 224 385 51 0 chr13 41829032 41829110 -77915788 - L2 LINE L2 -49 3223 3142 1189 115 25 140 chr13 41829260 41829546 -77915352 - Tigger7 DNA MER2_type -1 2490 2238 1153 173 116 46 chr13 41829853 41830137 -77914761 - MLT2C1 LTR ERVL -92 305 2 1997 121 27 7 chr13 41830318 41830615 -77914283 - AluSx SINE Alu -9 303 1 248 254 167 71 chr13 41831637 41831763 -77913135 + L2 LINE L2 2345 2482 -832 1465 308 61 20 chr13 41831954 41832516 -77912382 + L2 LINE L2 2486 3096 -217 3062 194 28 59 chr13 41832516 41833022 -77911876 - LTR2B LTR ERV1 0 490 1 1465 308 61 20 chr13 41833022 41833250 -77911648 + L2 LINE L2 3096 3313 0 4935 113 47 8 chr13 41833635 41834386 -77910512 + LTR17 LTR ERV1 1 780 0 198 328 95 35 chr13 41834440 41834556 -77910342 - L2 LINE L2 -45 3268 3146 212 269 171 10 chr13 41834792 41834940 -77909958 - MIR SINE MIR -62 146 20 2214 101 0 41 chr13 41835434 41835752 -77909146 + AluSp SINE Alu 1 305 -8 21 36 0 0 chr13 41836193 41836221 -77908677 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 41836831 41836853 -77908045 + AT_rich Low_complexity Low_complexity 1 22 0 2162 124 41 86 chr13 41837278 41837697 -77907201 + LTR19C LTR ERV1 380 779 0 3894 206 34 20 chr13 41837698 41838269 -77906629 - L1 LINE L1 -2839 3307 2714 1983 120 52 7 chr13 41838269 41838560 -77906338 - AluSq SINE Alu -9 304 1 3894 206 34 20 chr13 41838560 41839010 -77905888 - L1 LINE L1 -3432 2714 2272 12924 103 137 23 chr13 41839022 41841276 -77903622 - L1PBa LINE L1 -4349 2514 3 21 0 0 0 chr13 41841349 41841370 -77903528 + AT_rich Low_complexity Low_complexity 1 21 0 1299 92 54 0 chr13 41841490 41841674 -77903224 - AluSp SINE Alu -6 307 114 1272 205 86 37 chr13 41841795 41842224 -77902674 - LTR7 LTR ERV1 0 450 1 3323 132 24 4 chr13 41842224 41842770 -77902128 - HERVH LTR ERV1 0 7713 7157 309 200 0 0 chr13 41842763 41842818 -77902080 - HERVH LTR ERV1 -1697 6016 5962 * 4652 102 27 3 chr13 41842838 41843512 -77901386 - HERVH LTR ERV1 -2803 4910 4221 1422 134 0 5 chr13 41843510 41843726 -77901172 - HERVH LTR ERV1 -3423 4290 4076 * 1162 181 60 32 chr13 41843726 41843974 -77900924 - MSTB LTR MaLR -168 258 4 1099 283 114 23 chr13 41844195 41844623 -77900275 - LTR33 LTR ERVL -52 469 3 2360 107 0 0 chr13 41844833 41845142 -77899756 - AluSq SINE Alu -4 309 1 2183 103 7 3 chr13 41845142 41845433 -77899465 - AluSx SINE Alu -20 292 1 331 278 9 28 chr13 41845459 41845567 -77899331 - MIR SINE MIR -11 251 146 356 246 82 33 chr13 41845651 41845868 -77899030 - L1M3 LINE L1 -734 5437 5210 1185 247 147 28 chr13 41846691 41847148 -77897750 - MLT1J LTR MaLR 0 511 1 1702 184 78 9 chr13 41848398 41848746 -77896152 - MLT1D LTR MaLR -133 372 1 2081 83 28 7 chr13 41848753 41849042 -77895856 - AluY SINE Alu -16 295 1 395 252 107 0 chr13 41851415 41851518 -77893380 - L2 LINE L2 -1 3271 3158 236 216 0 20 chr13 41851898 41851949 -77892949 + L2 LINE L2 3222 3271 -1 763 306 192 21 chr13 41852458 41853102 -77891796 - L2 LINE L2 -8 3305 2557 461 232 134 75 chr13 41854305 41854695 -77890203 - L1MEd LINE L1 -1037 1453 947 1675 156 4 4 chr13 41854737 41854987 -77889911 - AluSq SINE Alu -63 250 1 249 305 76 44 chr13 41854999 41855248 -77889650 - HAL1 LINE L1 -1429 1078 822 23 68 0 0 chr13 41855979 41856023 -77888875 + AT_rich Low_complexity Low_complexity 1 44 0 902 216 31 108 chr13 41856927 41857186 -77887712 - MER8 DNA MER2_type 0 239 1 1897 123 18 3 chr13 41857800 41858084 -77886814 - AluSx SINE Alu -24 288 1 241 188 62 0 chr13 41858388 41858436 -77886462 + L2 LINE L2 3222 3272 0 1116 251 244 17 chr13 41858813 41859399 -77885499 + L2 LINE L2 1743 2461 -853 723 268 117 0 chr13 41859404 41859609 -77885289 - LTR16A LTR ERVL -5 445 217 308 266 89 0 chr13 41859610 41859689 -77885209 - L2 LINE L2 -1112 2202 2117 455 309 73 0 chr13 41859689 41859867 -77885031 - LTR16A LTR ERVL -242 208 18 1168 267 135 3 chr13 41859876 41860262 -77884636 + L2 LINE L2 2450 2886 -428 188 326 10 82 chr13 41860398 41860496 -77884402 - MIR SINE MIR -102 106 16 216 0 0 0 chr13 41860987 41861011 -77883887 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 26 30 0 0 chr13 41861508 41861541 -77883357 + AT_rich Low_complexity Low_complexity 1 33 0 475 265 146 64 chr13 41862010 41862197 -77882701 + MIR SINE MIR 13 222 -40 2677 141 53 0 chr13 41862197 41862651 -77882247 - L1PA13 LINE L1 0 6163 5686 475 265 146 64 chr13 41862651 41862682 -77882216 + MIR SINE MIR 222 249 -13 258 369 85 0 chr13 41862774 41862915 -77881983 + MIR SINE MIR 104 256 -6 970 171 62 0 chr13 41863355 41863531 -77881367 - MER6B DNA MER2_type -1 209 23 2165 80 14 3 chr13 41863568 41863855 -77881043 - AluY SINE Alu -20 291 2 2508 96 11 14 chr13 41863909 41864274 -77880624 - THE1B LTR MaLR 0 364 1 312 241 0 0 chr13 41864964 41865043 -77879855 + (TA)n Simple_repeat Simple_repeat 1 79 0 2495 66 0 0 chr13 41865283 41865586 -77879312 - AluY SINE Alu -8 303 1 372 330 79 23 chr13 41866416 41866631 -77878267 - MIR SINE MIR -30 232 6 356 252 122 46 chr13 41866646 41866777 -77878121 - MIR SINE MIR -65 197 57 637 236 146 6 chr13 41867022 41867200 -77877698 - MIR SINE MIR -17 245 43 2168 95 4 0 chr13 41867202 41867475 -77877423 + AluSg SINE Alu 2 275 -35 231 245 0 0 chr13 41869403 41869456 -77875442 - Charlie4 DNA MER1_type -1908 53 1 233 242 66 55 chr13 41870230 41870321 -77874577 + MER5C DNA MER1_type 14 105 -219 236 278 44 22 chr13 41870360 41870450 -77874448 + MER5C DNA MER1_type 233 324 0 * 527 305 30 30 chr13 41870450 41870639 -77874259 - L3 LINE CR1 -47 1530 1342 308 294 76 34 chr13 41870867 41870986 -77873912 + L3 LINE CR1 269 392 -1185 852 319 146 22 chr13 41871342 41871908 -77872990 - L2 LINE L2 -1 3312 2688 564 200 0 0 chr13 41871995 41872095 -77872803 + Charlie1a DNA MER1_type 102 201 -1254 245 169 220 68 chr13 41872139 41872174 -77872724 + L1M4 LINE L1 4972 5000 -1146 782 264 49 59 chr13 41872174 41872580 -77872318 - MER93a LTR ERV1 0 402 1 245 169 220 68 chr13 41872580 41872662 -77872236 + L1M4 LINE L1 5000 5107 -1039 686 268 48 67 chr13 41872675 41872818 -77872080 - L1M4 LINE L1 -2414 3732 3588 1995 97 22 4 chr13 41872818 41873087 -77871811 - AluY SINE Alu -3 308 35 686 268 48 67 chr13 41873087 41873193 -77871705 - L1M4 LINE L1 -2558 3588 3482 2313 96 0 10 chr13 41873193 41873507 -77871391 - AluSx SINE Alu -1 311 1 686 268 48 67 chr13 41873507 41873734 -77871164 - L1M4 LINE L1 -2664 3482 3264 1306 277 106 10 chr13 41873757 41874595 -77870303 - L1M4 LINE L1 -2998 3148 2131 192 234 0 0 chr13 41874599 41874646 -77870252 + (TA)n Simple_repeat Simple_repeat 1 47 0 1530 187 0 8 chr13 41874784 41875046 -77869852 + AluJo SINE Alu 36 295 -17 2575 169 26 61 chr13 41875455 41875518 -77869380 - Charlie1 DNA MER1_type -76 2685 2621 1695 194 3 16 chr13 41875518 41875828 -77869070 - AluJb SINE Alu 0 312 7 2575 169 26 61 chr13 41875828 41876416 -77868482 - Charlie1 DNA MER1_type -140 2621 2057 950 200 17 0 chr13 41876416 41876596 -77868302 + MER5A DNA MER1_type 7 189 0 1225 319 133 33 chr13 41877279 41878126 -77866772 - L2 LINE L2 -685 2629 1698 715 262 50 130 chr13 41878232 41878655 -77866243 + L3 LINE CR1 796 1184 -393 386 275 125 0 chr13 41878655 41878775 -77866123 - L2 LINE L2 -2 3311 3177 1057 230 39 30 chr13 41878788 41879199 -77865699 + MLT1H LTR MaLR 3 539 -10 1098 289 113 42 chr13 41879218 41879775 -77865123 - L2 LINE L2 -164 3149 2530 2360 78 3 0 chr13 41879775 41880068 -77864830 + AluSp SINE Alu 1 294 -19 1098 289 113 42 chr13 41880068 41880205 -77864693 - L2 LINE L2 -783 2530 2404 309 290 77 13 chr13 41880201 41880356 -77864542 + L3 LINE CR1 1220 1384 -193 * 202 224 24 106 chr13 41880376 41880461 -77864437 - L2 LINE L2 -6 3307 3230 407 250 80 0 chr13 41880506 41880606 -77864292 + L3 LINE CR1 1467 1574 -3 585 174 42 7 chr13 41880671 41880815 -77864083 - L1MB8 LINE L1 -3 6175 6027 4341 205 81 60 chr13 41880841 41882278 -77862620 - L1M4 LINE L1 -1325 4821 3355 23 0 0 0 chr13 41883879 41883902 -77860996 + AT_rich Low_complexity Low_complexity 1 23 0 1269 169 24 109 chr13 41884592 41884843 -77860055 + MLT1D LTR MaLR 1 219 -286 198 0 0 0 chr13 41884843 41884865 -77860033 + (GA)n Simple_repeat Simple_repeat 1 22 0 1269 169 24 109 chr13 41884865 41884944 -77859954 + MLT1D LTR MaLR 219 303 -202 368 311 37 62 chr13 41885812 41885973 -77858925 + MIR3 SINE MIR 31 187 -21 211 275 62 88 chr13 41886105 41886127 -77858771 + L2 LINE L2 3157 3178 -94 3218 175 60 15 chr13 41886127 41886722 -77858176 - LTR26E LTR ERV1 0 622 1 211 275 62 88 chr13 41886722 41886779 -77858119 + L2 LINE L2 3178 3234 -38 1713 128 13 58 chr13 41886915 41887228 -77857670 + MER4D LTR ERV1 1 299 -573 3178 163 125 29 chr13 41887423 41888086 -77856812 - LTR8A LTR ERV1 0 727 1 232 342 105 13 chr13 41888093 41888169 -77856729 - MIR SINE MIR -156 106 24 542 287 130 14 chr13 41888243 41888466 -77856432 - MIR SINE MIR -12 250 2 2131 112 84 35 chr13 41888789 41889136 -77855762 + THE1B LTR MaLR 1 364 0 180 321 107 0 chr13 41889881 41889965 -77854933 + L2 LINE L2 3201 3293 -20 252 231 167 0 chr13 41890599 41890677 -77854221 + L2 LINE L2 2640 2730 -584 861 301 36 42 chr13 41890815 41891201 -77853697 - HAL1 LINE L1 -1594 913 530 670 257 25 40 chr13 41891215 41891417 -77853481 - MER63A DNA MER1_type -11 199 1 1269 261 80 23 chr13 41891432 41891868 -77853030 - HAL1 LINE L1 -2001 506 46 663 188 0 55 chr13 41892061 41892189 -77852709 + FLAM_A SINE Alu 1 121 -12 336 260 68 62 chr13 41893135 41893281 -77851617 + MIR SINE MIR 34 180 -82 26 50 0 0 chr13 41893426 41893466 -77851432 + AT_rich Low_complexity Low_complexity 1 40 0 190 235 26 130 chr13 41893903 41894018 -77850880 + L2 LINE L2 2954 3056 -257 525 280 53 0 chr13 41894191 41894341 -77850557 + MIR SINE MIR 2 159 -103 387 250 29 10 chr13 41895098 41895202 -77849696 - MER103 DNA DNA -45 121 16 364 321 144 52 chr13 41895838 41896440 -77848458 + L2 LINE L2 2212 2869 -445 358 369 27 34 chr13 41896804 41896953 -77847945 + L2 LINE L2 3125 3272 0 395 240 0 20 chr13 41898098 41898198 -77846700 - MER63 DNA MER1_type -271 790 693 2230 107 10 0 chr13 41898199 41898621 -77846277 + AluSp SINE Alu 1 425 0 321 150 0 190 chr13 41898624 41898724 -77846174 - MER63 DNA MER1_type -129 707 1 1111 279 74 20 chr13 41900758 41901149 -77843749 + HERV16 LTR ERVL 742 1153 -3843 2607 257 109 45 chr13 41901530 41901714 -77843184 + HAL1 LINE L1 798 969 -1538 1988 152 0 10 chr13 41901714 41902024 -77842874 + AluSx SINE Alu 1 307 -5 2607 257 109 45 chr13 41902024 41903269 -77841629 + HAL1 LINE L1 969 2319 -188 931 135 7 7 chr13 41903272 41903413 -77841485 + AluJb SINE Alu 1 141 -171 3097 101 26 0 chr13 41903542 41903966 -77840932 + MLT2A2 LTR ERVL 19 453 0 227 200 0 13 chr13 41904007 41904082 -77840816 + (CTA)n Simple_repeat Simple_repeat 1 74 0 185 147 0 0 chr13 41904474 41904508 -77840390 + L2 LINE L2 3239 3272 0 2139 156 35 24 chr13 41904762 41905133 -77839765 + THE1C LTR MaLR 1 375 0 466 284 7 20 chr13 41905383 41905531 -77839367 - L2 LINE L2 -1 3312 3167 231 103 0 0 chr13 41905807 41905836 -77839062 + (A)n Simple_repeat Simple_repeat 1 29 0 225 0 0 0 chr13 41905841 41905866 -77839032 + (TA)n Simple_repeat Simple_repeat 2 26 0 977 179 0 28 chr13 41905966 41906145 -77838753 - AluJb SINE Alu -138 174 1 1809 246 55 7 chr13 41906146 41906823 -77838075 - L1M4 LINE L1 -3108 3038 2202 844 158 0 8 chr13 41906834 41906961 -77837937 - FLAM_C SINE Alu -17 126 1 270 256 0 0 chr13 41906966 41907048 -77837850 - L1M4 LINE L1 -3932 2214 2133 5639 124 12 21 chr13 41907055 41908053 -77836845 - L1PB1 LINE L1 -3 6148 5160 667 133 250 0 chr13 41908121 41908249 -77836649 + AluSq SINE Alu 134 293 -20 830 244 235 6 chr13 41908269 41908597 -77836301 - L1ME LINE L1 -2272 3808 3406 443 185 167 43 chr13 41908745 41908907 -77835991 - L1ME LINE L1 -3225 2855 2674 473 259 210 13 chr13 41908914 41909138 -77835760 - MER5C DNA MER1_type -56 268 1 1170 284 62 6 chr13 41909147 41909618 -77835280 - L1ME LINE L1 -3372 2708 2212 1033 206 45 45 chr13 41909672 41909958 -77834940 - L1ME1 LINE L1 -5 6161 5876 263 272 58 53 chr13 41909960 41910166 -77834732 - L1ME LINE L1 -5862 208 2 2107 148 3 0 chr13 41910306 41910616 -77834282 - AluJb SINE Alu -1 311 1 288 0 0 0 chr13 41913152 41913184 -77831714 + (CA)n Simple_repeat Simple_repeat 2 33 0 272 206 15 29 chr13 41913469 41913537 -77831361 + L3b LINE CR1 1135 1201 -382 262 288 71 35 chr13 41913577 41913747 -77831151 - L2 LINE L2 0 3313 3138 1031 204 43 14 chr13 41914214 41914425 -77830473 - MER20 DNA MER1_type -1 218 2 239 225 371 0 chr13 41914710 41914799 -77830099 + L2 LINE L2 3151 3272 0 292 247 146 73 chr13 41915203 41915320 -77829578 + MIR SINE MIR 24 160 -102 1448 62 6 0 chr13 41915320 41915496 -77829402 + L1PA5 LINE L1 5974 6150 -4 292 247 146 73 chr13 41915496 41915556 -77829342 + MIR SINE MIR 160 214 -48 479 258 103 37 chr13 41915664 41916030 -77828868 - MLT1G1 LTR MaLR -59 536 67 229 352 0 0 chr13 41916333 41916387 -77828511 + L2 LINE L2 3151 3204 -68 617 256 128 10 chr13 41918242 41918437 -77826461 - MIR SINE MIR -43 219 2 1092 87 0 0 chr13 41921108 41921246 -77823652 - AluSp/q SINE Alu -17 296 159 211 257 68 40 chr13 41923090 41923164 -77821734 + MIR SINE MIR 45 120 -88 463 314 73 14 chr13 41923204 41923424 -77821474 + MIR SINE MIR 20 252 -10 633 170 63 6 chr13 41923882 41924041 -77820857 - Charlie4 DNA MER1_type -54 1907 1740 395 281 260 5 chr13 41924600 41924796 -77820102 + MIR SINE MIR 6 251 -11 492 232 179 0 chr13 41924824 41924975 -77819923 + MER5B DNA MER1_type 1 178 0 684 228 93 0 chr13 41925450 41925612 -77819286 + MER5A DNA MER1_type 13 189 0 502 253 58 32 chr13 41925616 41925770 -77819128 + MIR SINE MIR 9 166 -96 1717 187 82 12 chr13 41925784 41925954 -77818944 + Charlie4a DNA MER1_type 17 174 -1787 2600 59 0 0 chr13 41925954 41926259 -77818639 - AluY SINE Alu -2 309 5 1717 187 82 12 chr13 41926259 41926500 -77818398 + Charlie4a DNA MER1_type 174 457 -51 346 194 30 0 chr13 41927006 41927073 -77817825 - L2 LINE L2 -7 3306 3238 1917 211 27 17 chr13 41927189 41927596 -77817302 + MLT2D LTR ERVL 4 414 0 487 270 74 47 chr13 41927834 41928049 -77816849 - MIR SINE MIR -11 251 31 302 315 19 19 chr13 41928482 41928590 -77816308 - L3 LINE CR1 -1150 427 320 313 321 0 70 chr13 41929786 41929973 -77814925 + LTR67 LTR ERVL 13 186 -371 395 264 93 21 chr13 41930071 41930264 -77814634 + LTR67 LTR ERVL 351 557 0 262 240 0 0 chr13 41930485 41930535 -77814363 + MER3 DNA MER1_type 41 90 -119 * 322 118 0 105 chr13 41930497 41930562 -77814336 - MER3 DNA MER1_type -5 204 146 5592 67 20 39 chr13 41930562 41930796 -77814102 + L1MA1 LINE L1 5554 5791 -511 2174 110 0 0 chr13 41930796 41931104 -77813794 + AluSx SINE Alu 1 308 0 5592 67 20 39 chr13 41931104 41931631 -77813267 + L1MA1 LINE L1 5791 6302 0 616 271 6 0 chr13 41931652 41931818 -77813080 - MER3 DNA MER1_type -42 167 1 244 242 316 0 chr13 41932257 41932352 -77812546 + L2 LINE L2 3137 3261 -11 343 236 118 18 chr13 41932653 41932763 -77812135 + MIR SINE MIR 126 246 -16 21 0 0 0 chr13 41933044 41933065 -77811833 + AT_rich Low_complexity Low_complexity 1 21 0 206 132 0 26 chr13 41933230 41933268 -77811630 + (TCTCCC)n Simple_repeat Simple_repeat 3 39 0 180 111 0 0 chr13 41933484 41933511 -77811387 + (TC)n Simple_repeat Simple_repeat 2 28 0 312 278 24 18 chr13 41933513 41933682 -77811216 + (TCTCTG)n Simple_repeat Simple_repeat 2 171 0 226 308 19 39 chr13 41934146 41934250 -77810648 - MIR SINE MIR -97 165 64 234 62 0 0 chr13 41935972 41936004 -77808894 + (CA)n Simple_repeat Simple_repeat 1 32 0 4111 138 5 20 chr13 41936966 41937611 -77807287 - MER41B LTR ERV1 0 635 1 255 203 34 0 chr13 41938686 41938745 -77806153 + tRNA-Ile-ATT tRNA tRNA 14 74 -3 896 241 71 83 chr13 41939223 41939674 -77805224 - L2 LINE L2 -2 3311 2851 4800 130 30 13 chr13 41939674 41940444 -77804454 - LTR39 LTR ERV1 0 783 1 896 241 71 83 chr13 41940444 41940543 -77804355 - L2 LINE L2 -462 2851 2752 397 153 0 47 chr13 41941411 41941496 -77803402 - MER53 DNA DNA -6 183 103 2461 86 0 0 chr13 41941497 41941798 -77803100 + AluSq SINE Alu 1 301 -12 2290 104 0 7 chr13 41941808 41942117 -77802781 + AluSq SINE Alu 1 307 -6 227 151 19 19 chr13 41942132 41942185 -77802713 - MER53 DNA DNA -3 186 134 1956 92 0 0 chr13 41942307 41942545 -77802353 - AluSx SINE Alu -74 238 1 651 189 23 0 chr13 41942545 41942677 -77802221 - MER53 DNA DNA -49 140 6 363 359 21 11 chr13 41943363 41943597 -77801301 - MIR SINE MIR -14 248 14 2262 103 7 0 chr13 41945345 41945645 -77799253 + AluSx SINE Alu 1 302 -10 22 35 0 0 chr13 41946328 41946357 -77798541 + AT_rich Low_complexity Low_complexity 1 29 0 330 243 201 14 chr13 41946557 41946701 -77798197 - MER5A DNA MER1_type -2 187 17 1568 190 96 25 chr13 41948343 41948779 -77796119 + MLT1C LTR MaLR 1 467 0 193 274 65 0 chr13 41948875 41948937 -77795961 + L2 LINE L2 3207 3272 0 548 276 131 0 chr13 41952356 41952555 -77792343 - MIR SINE MIR -1 261 37 227 323 196 5 chr13 41952809 41953029 -77791869 + L2 LINE L2 2576 2837 -477 1764 174 0 17 chr13 41953149 41953448 -77791450 + AluJo SINE Alu 1 294 -18 836 221 43 14 chr13 41953448 41953645 -77791253 - MLT1D LTR MaLR -299 206 1 207 271 0 0 chr13 41953683 41953731 -77791167 + L2 LINE L2 3240 3287 -26 185 259 17 17 chr13 41954298 41954356 -77790542 + MIR SINE MIR 152 209 -53 1324 199 112 13 chr13 41954946 41955258 -77789640 + MER2 DNA MER2_type 1 343 -1 407 300 0 0 chr13 41955304 41955404 -77789494 - L3 LINE CR1 -7 1570 1471 259 300 11 0 chr13 41955897 41955987 -77788911 - L1ME LINE L1 -274 5847 5757 459 313 21 26 chr13 41957288 41957480 -77787418 + MLT1K LTR MaLR 124 314 -274 1735 215 39 35 chr13 41958687 41959147 -77785751 - MLT1C LTR MaLR 0 467 6 304 315 18 9 chr13 41959348 41959459 -77785439 + MER81 DNA DNA 3 114 0 211 360 9 0 chr13 41960542 41960653 -77784245 + L2 LINE L2 2943 3054 -218 437 277 54 36 chr13 41961605 41961771 -77783127 + MIR3 SINE MIR 3 171 -37 307 295 36 0 chr13 41962302 41962414 -77782484 - MLT1L LTR MaLR -4 611 496 358 276 52 88 chr13 41962443 41962635 -77782263 - MLT1L LTR MaLR -204 411 227 793 356 21 23 chr13 41963441 41963868 -77781030 - LTR16B LTR ERVL 0 464 39 617 247 165 40 chr13 41964572 41964888 -77780010 - MLT1L LTR MaLR -10 554 240 22 0 0 0 chr13 41965578 41965600 -77779298 + AT_rich Low_complexity Low_complexity 1 22 0 11321 27 0 0 chr13 41966590 41967894 -77777004 - L1PA2 LINE L1 -1201 4945 3642 7915 19 0 0 chr13 41967894 41969094 -77775804 + L1PA2 LINE L1 4952 6151 -4 299 319 111 0 chr13 41969148 41969283 -77775615 + MIR SINE MIR 85 234 -28 2194 113 0 17 chr13 41969597 41969898 -77775000 - AluSg SINE Alu -14 296 1 29 47 0 0 chr13 41970075 41970118 -77774780 + AT_rich Low_complexity Low_complexity 1 43 0 7437 85 4 0 chr13 41970118 41971902 -77772996 - L1PA7 LINE L1 -5 6149 4358 1278 224 97 63 chr13 41973203 41973708 -77771190 - MER39 LTR ERV1 0 707 51 2624 226 79 25 chr13 41973734 41973953 -77770945 - MER72 LTR ERV1 0 722 516 2145 120 0 17 chr13 41973953 41974252 -77770646 + AluSq SINE Alu 1 294 -19 2624 226 79 25 chr13 41974252 41974717 -77770181 - MER72 LTR ERV1 -206 516 1 366 278 63 16 chr13 41974740 41974866 -77770032 + L2 LINE L2 3182 3313 0 229 321 112 15 chr13 41975196 41975330 -77769568 + MER20B DNA MER1_type 29 175 -608 2246 108 0 13 chr13 41975367 41975673 -77769225 - AluY SINE Alu -8 303 2 182 229 0 16 chr13 41975747 41975808 -77769090 + CT-rich Low_complexity Low_complexity 1 60 0 329 314 0 79 chr13 41976139 41976279 -77768619 + LTR33A LTR ERVL 5 133 -390 588 271 71 28 chr13 41976296 41976551 -77768347 + LTR33A LTR ERVL 250 515 -8 263 286 193 0 chr13 41976574 41976693 -77768205 - MIR SINE MIR -119 143 2 251 279 38 0 chr13 41976859 41976938 -77767960 + L3 LINE CR1 400 481 -1096 1966 124 67 0 chr13 41978331 41978614 -77766284 - AluSq SINE Alu -9 304 3 1123 221 109 22 chr13 41978836 41979202 -77765696 - MLT1C LTR MaLR -69 398 1 330 243 201 14 chr13 41980844 41980988 -77763910 + MER5A DNA MER1_type 17 187 -2 22 35 0 0 chr13 41981189 41981218 -77763680 + AT_rich Low_complexity Low_complexity 1 29 0 2242 104 7 0 chr13 41981901 41982199 -77762699 - AluSx SINE Alu -10 302 3 637 230 119 28 chr13 41982239 41982603 -77762295 + MLT1J2 LTR MaLR 13 396 -13 575 350 137 24 chr13 41982617 41983239 -77761659 + L3 LINE CR1 553 1244 -333 2242 196 21 0 chr13 41983246 41983720 -77761178 - L1MB7 LINE L1 -5 6179 5696 1496 113 0 0 chr13 41983750 41983954 -77760944 - L1PA8A LINE L1 -17 6114 5911 2178 176 44 26 chr13 41983958 41984002 -77760896 - L1MB7 LINE L1 -488 5690 5648 1850 158 40 53 chr13 41984002 41984382 -77760516 + THE1C LTR MaLR 1 375 0 2178 176 44 26 chr13 41984382 41985126 -77759772 - L1MB7 LINE L1 -530 5648 4890 2981 214 19 6 chr13 41985146 41985818 -77759080 - L1MB7 LINE L1 -3014 3132 2452 274 217 14 0 chr13 41985827 41985896 -77759002 - L1MEc LINE L1 -1542 4864 4795 5621 124 51 15 chr13 41985910 41986787 -77758111 - HSMAR2 DNA Mariner -2 1300 392 1176 123 22 0 chr13 41986774 41986953 -77757945 - HSMAR2 DNA Mariner -1119 183 1 * 903 282 63 36 chr13 41986954 41987508 -77757390 - L1MEc LINE L1 -1627 4779 4211 367 294 139 21 chr13 41987762 41988000 -77756898 + Charlie8 DNA MER1_type 1 266 -2151 1510 95 3 165 chr13 41989259 41989586 -77755312 + LTR12 LTR ERV1 1 274 -440 243 260 70 0 chr13 41989588 41989688 -77755210 + LTR30 LTR ERV1 537 643 -79 529 172 10 0 chr13 41989690 41989789 -77755109 + LTR12 LTR ERV1 615 714 0 944 292 123 6 chr13 41990508 41991022 -77753876 - L1MEc LINE L1 -2299 4107 3534 770 223 36 86 chr13 41991069 41991289 -77753609 + MER58A DNA MER1_type 4 212 -12 1714 255 81 50 chr13 41991309 41992369 -77752529 - L1MEc LINE L1 -2923 3483 2391 341 328 20 55 chr13 41992664 41992776 -77752122 - L1MEc LINE L1 -4576 2011 1908 2296 111 0 13 chr13 41992776 41993091 -77751807 + AluSq SINE Alu 1 311 -2 341 328 20 55 chr13 41993091 41993179 -77751719 - L1MEc LINE L1 -4679 1908 1818 324 327 40 15 chr13 41993345 41993544 -77751354 - L1MEc LINE L1 -4936 1460 1257 1079 150 0 0 chr13 41993544 41993704 -77751194 - FRAM SINE Alu -4 172 13 2302 156 28 49 chr13 41993761 41994234 -77750664 - L1MB8 LINE L1 0 6178 5716 208 246 14 29 chr13 41994366 41994435 -77750463 + T-rich Low_complexity Low_complexity 2 69 0 233 88 29 0 chr13 41994523 41994557 -77750341 - L1MEc LINE L1 -5489 907 873 265 277 39 39 chr13 41994877 41995007 -77749891 - L1MEc LINE L1 -5987 409 280 876 292 87 5 chr13 41995040 41995431 -77749467 + L1ME4a LINE L1 5502 5924 -197 314 201 97 65 chr13 41995448 41995602 -77749296 + L1ME4a LINE L1 5963 6121 0 2034 143 23 7 chr13 41996040 41996347 -77748551 + AluSx SINE Alu 1 312 0 266 107 196 0 chr13 41997231 41997287 -77747611 - L1MEc LINE L1 -5597 812 746 410 252 17 28 chr13 41997295 41997417 -77747481 - L1MEc LINE L1 -5753 656 460 682 232 57 11 chr13 41997440 41997617 -77747281 - L1MEc LINE L1 -6223 186 2 1223 284 147 8 chr13 41998236 41998980 -77745918 + L2 LINE L2 2461 3312 -1 2065 198 111 20 chr13 41999277 41999805 -77745093 - MLT1E2 LTR MaLR -1 625 72 223 348 0 0 chr13 42000305 42000374 -77744524 - MIR SINE MIR -169 93 25 2390 150 23 71 chr13 42001472 42001953 -77742945 + LTR32 LTR ERVL 14 471 0 413 353 0 0 chr13 42002141 42002257 -77742641 + L2 LINE L2 3153 3268 -4 245 328 23 8 chr13 42003234 42003365 -77741533 + CT-rich Low_complexity Low_complexity 1 133 0 558 343 33 6 chr13 42003377 42003558 -77741340 + MER91A DNA MER1_type 10 195 -1 307 246 29 0 chr13 42004071 42004140 -77740758 + L2 LINE L2 3201 3271 -1 207 181 169 60 chr13 42006167 42006250 -77738648 - MIR SINE MIR -81 127 36 2576 153 9 41 chr13 42007148 42007611 -77737287 + MLT2C2 LTR ERVL 2 449 -15 444 201 60 75 chr13 42007674 42007841 -77737057 + MIR SINE MIR 30 192 -61 2012 116 0 0 chr13 42007900 42008167 -77736731 + AluSx SINE Alu 31 297 -15 34 0 0 0 chr13 42008919 42008953 -77735945 + AT_rich Low_complexity Low_complexity 1 34 0 1013 181 88 15 chr13 42008972 42009176 -77735722 + MER20 DNA MER1_type 1 219 0 242 266 103 7 chr13 42010095 42010191 -77734707 - MIR3 SINE MIR -104 104 12 209 284 136 0 chr13 42010288 42010369 -77734529 + MIR SINE MIR 62 153 -109 391 265 122 0 chr13 42010538 42010685 -77734213 + MER103 DNA DNA 2 166 0 2311 136 67 84 chr13 42010944 42011406 -77733492 - LTR32 LTR ERVL 0 471 18 482 294 51 68 chr13 42011413 42011706 -77733192 + MLT1H LTR MaLR 249 536 -13 321 279 109 82 chr13 42011765 42012105 -77732793 - MLT1E2-int LTR MaLR 0 1371 1023 458 202 56 0 chr13 42013056 42013145 -77731753 - MLT1H LTR MaLR -13 536 443 2144 119 3 0 chr13 42013538 42013833 -77731065 + AluSx SINE Alu 2 297 -15 253 354 0 14 chr13 42014171 42014315 -77730583 + (TG)n Simple_repeat Simple_repeat 1 142 0 199 225 188 0 chr13 42015181 42015261 -77729637 - MIR SINE MIR -83 179 85 2320 97 0 3 chr13 42015410 42015710 -77729188 + AluSg SINE Alu 1 299 -11 293 326 66 22 chr13 42017414 42017595 -77727303 - MIR SINE MIR -34 228 40 1822 188 47 21 chr13 42018348 42018364 -77726534 + L1MB4 LINE L1 5788 5802 -378 2123 108 3 66 chr13 42018364 42018697 -77726201 - AluSx SINE Alu 0 312 1 1822 188 47 21 chr13 42018697 42019063 -77725835 + L1MB4 LINE L1 5802 6180 0 233 242 154 11 chr13 42019370 42019461 -77725437 - L2 LINE L2 -179 3093 2990 502 314 32 5 chr13 42020165 42020350 -77724548 + MIR SINE MIR 3 192 -70 210 256 0 0 chr13 42020414 42020457 -77724441 + L3 LINE CR1 1528 1570 -7 2181 93 29 35 chr13 42021254 42021567 -77723331 - AluSx SINE Alu -1 311 1 2043 136 30 0 chr13 42022996 42023298 -77721600 - AluSx SINE Alu -1 311 1 855 241 68 4 chr13 42024018 42024254 -77720644 + MIR SINE MIR 7 257 -5 207 290 241 35 chr13 42025022 42025167 -77719731 - MIR3 SINE MIR -12 196 22 414 265 98 7 chr13 42025830 42026117 -77718781 - L1M4 LINE L1 -2714 3432 3120 1631 194 0 25 chr13 42026125 42026440 -77718458 - AluJb SINE Alu -5 307 1 822 236 70 16 chr13 42026502 42026816 -77718082 - L1M4 LINE L1 -3132 3014 2684 378 0 0 0 chr13 42027461 42027503 -77717395 + (TG)n Simple_repeat Simple_repeat 2 43 0 242 299 25 38 chr13 42027504 42027661 -77717237 + (CAGAGA)n Simple_repeat Simple_repeat 2 156 0 493 234 48 6 chr13 42027984 42028151 -77716747 + L1ME4a LINE L1 5946 6119 -2 1975 87 4 19 chr13 42028258 42028522 -77716376 + AluSq SINE Alu 46 305 -8 326 290 93 16 chr13 42029703 42029886 -77715012 + MIR SINE MIR 16 212 -50 5526 164 17 19 chr13 42031548 42033434 -77711464 + L1PA16 LINE L1 4279 6155 -11 2213 125 0 13 chr13 42033434 42033745 -77711153 + AluSx SINE Alu 1 307 -5 631 299 111 29 chr13 42034713 42035155 -77709743 + HAL1 LINE L1 812 1289 -1218 462 285 14 0 chr13 42035470 42035614 -77709284 + (CACCAT)n Simple_repeat Simple_repeat 4 149 0 180 235 0 0 chr13 42035708 42035776 -77709122 + (CCA)n Simple_repeat Simple_repeat 1 68 0 229 345 17 35 chr13 42035782 42035956 -77708942 + (CACCAT)n Simple_repeat Simple_repeat 3 173 0 * 306 368 6 6 chr13 42035862 42036028 -77708870 + (CCA)n Simple_repeat Simple_repeat 1 166 0 476 320 6 0 chr13 42036058 42036236 -77708662 + (CCA)n Simple_repeat Simple_repeat 2 180 0 399 89 0 0 chr13 42037555 42037611 -77707287 + (T)n Simple_repeat Simple_repeat 1 56 0 315 228 32 106 chr13 42039541 42039664 -77705234 - MIR SINE MIR -70 192 79 355 219 23 78 chr13 42039796 42039924 -77704974 - MER5A DNA MER1_type -32 157 37 493 216 147 59 chr13 42039930 42039958 -77704940 + MIR SINE MIR 9 33 -229 2147 99 0 10 chr13 42039958 42040250 -77704648 + AluSg SINE Alu 1 289 -21 493 216 147 59 chr13 42040250 42040425 -77704473 + MIR SINE MIR 33 230 -32 400 264 189 0 chr13 42041008 42041156 -77703742 - MIR SINE MIR -73 189 14 263 272 111 12 chr13 42041718 42041799 -77703099 + MIR3 SINE MIR 66 154 -54 680 260 98 6 chr13 42041989 42042162 -77702736 - MIR SINE MIR -21 241 53 1974 144 3 0 chr13 42042388 42042679 -77702219 + AluJo SINE Alu 1 292 -20 188 182 23 0 chr13 42044116 42044160 -77700738 + GA-rich Low_complexity Low_complexity 1 45 0 351 270 37 37 chr13 42044178 42044341 -77700557 + GA-rich Low_complexity Low_complexity 2 164 0 267 79 0 0 chr13 42046424 42046462 -77698436 + (CA)n Simple_repeat Simple_repeat 2 39 0 1674 138 40 0 chr13 42049018 42049295 -77695603 + L1PA16 LINE L1 5692 5982 -184 924 216 0 0 chr13 42049396 42049581 -77695317 + L1PA16 LINE L1 5982 6166 0 21 36 0 0 chr13 42050216 42050244 -77694654 + AT_rich Low_complexity Low_complexity 1 28 0 1573 129 0 4 chr13 42050439 42050680 -77694218 - L1MA4 LINE L1 -11 6289 6050 234 0 0 0 chr13 42052241 42052267 -77692631 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr13 42052559 42052580 -77692318 + AT_rich Low_complexity Low_complexity 1 21 0 1644 273 182 37 chr13 42052861 42053085 -77691813 - L2 LINE L2 -41 3272 3082 2338 135 28 28 chr13 42053085 42053449 -77691449 + THE1B LTR MaLR 1 364 0 1644 273 182 37 chr13 42053449 42054642 -77690256 - L2 LINE L2 -231 3082 1652 214 181 114 133 chr13 42054714 42054819 -77690079 - MIR3 SINE MIR -24 184 82 256 357 105 32 chr13 42055668 42055945 -77688953 + L2 LINE L2 2879 3175 -97 1805 148 7 30 chr13 42056072 42056377 -77688521 - AluJo SINE Alu -11 301 4 2355 97 3 0 chr13 42059597 42059897 -77685001 + AluSx SINE Alu 1 301 -11 22 88 0 0 chr13 42060693 42060750 -77684148 + AT_rich Low_complexity Low_complexity 1 57 0 227 324 45 0 chr13 42064783 42064894 -77680004 - L2 LINE L2 -914 2400 2285 824 192 93 5 chr13 42064929 42065122 -77679776 + LTR40c LTR ERVL 61 270 -195 190 289 163 50 chr13 42066172 42066473 -77678425 + L2 LINE L2 1755 2089 -1225 314 327 29 0 chr13 42066729 42066833 -77678065 + MIR SINE MIR 47 153 -55 2336 114 0 0 chr13 42067000 42067306 -77677592 + AluSx SINE Alu 1 306 -6 843 161 0 0 chr13 42067609 42067733 -77677165 - FLAM_C SINE Alu -8 125 2 2763 13 0 0 chr13 42067934 42068236 -77676662 - AluYa5 SINE Alu -9 302 1 22 35 0 0 chr13 42068241 42068270 -77676628 + AT_rich Low_complexity Low_complexity 1 29 0 228 226 170 71 chr13 42068733 42068945 -77675953 - L1ME4a LINE L1 0 6121 5889 244 262 138 71 chr13 42070051 42070276 -77674622 - MIR SINE MIR 0 262 23 203 231 15 15 chr13 42070846 42070911 -77673987 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 815 262 17 0 chr13 42070990 42071162 -77673736 + MER5A DNA MER1_type 12 186 -3 198 302 75 0 chr13 42071227 42071280 -77673618 + MIR3 SINE MIR 132 188 -20 362 258 67 0 chr13 42074633 42074753 -77670145 + L1ME4a LINE L1 5695 5822 -299 5539 182 67 10 chr13 42074757 42077484 -77667414 + L1MA4 LINE L1 3310 6293 -7 499 260 141 0 chr13 42077466 42077708 -77667190 + L1ME4a LINE L1 5800 6075 -46 * 234 313 25 25 chr13 42079017 42079097 -77665801 + L2 LINE L2 3151 3230 -42 320 273 175 7 chr13 42079163 42079317 -77665581 - MIR SINE MIR -81 181 2 2195 98 7 23 chr13 42079520 42079825 -77665073 - AluSg SINE Alu -10 300 1 439 219 190 83 chr13 42081477 42081625 -77663273 + L1ME4a LINE L1 5656 5787 -334 3986 14 0 0 chr13 42081625 42082051 -77662847 + L1PA2 LINE L1 5727 6152 -3 439 219 190 83 chr13 42082051 42082144 -77662754 + L1ME4a LINE L1 5787 5869 -252 186 43 0 0 chr13 42082144 42082167 -77662731 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 439 219 190 83 chr13 42082167 42082335 -77662563 + L1ME4a LINE L1 5869 6110 -11 26 30 0 0 chr13 42082456 42082489 -77662409 + AT_rich Low_complexity Low_complexity 1 33 0 1191 155 204 12 chr13 42082583 42082828 -77662070 - AluSg1 SINE Alu -17 292 1 295 280 93 34 chr13 42082922 42083040 -77661858 - MIR SINE MIR -126 136 12 193 218 0 55 chr13 42083602 42083657 -77661241 - MIR SINE MIR -29 233 182 358 231 9 37 chr13 42083697 42083805 -77661093 - MIR SINE MIR -41 221 117 433 264 50 14 chr13 42084181 42084321 -77660577 - MIR SINE MIR -66 196 52 243 240 27 116 chr13 42084382 42084528 -77660370 + L2 LINE L2 3173 3305 -8 346 328 31 36 chr13 42091261 42091453 -77653445 + L1ME4a LINE L1 5726 5916 -205 189 0 0 0 chr13 42091718 42091739 -77653159 + (CA)n Simple_repeat Simple_repeat 2 22 0 368 138 0 50 chr13 42092144 42092224 -77652674 - L1PA3 LINE L1 -1 6154 6079 415 372 92 26 chr13 42092268 42092658 -77652240 - L1MC/D LINE L1 -2028 5780 5365 22 0 0 0 chr13 42092663 42092685 -77652213 + AT_rich Low_complexity Low_complexity 1 22 0 583 257 0 48 chr13 42092693 42092880 -77652018 + MER5B DNA MER1_type 1 178 0 223 396 0 0 chr13 42092906 42093002 -77651896 + L2 LINE L2 1822 1917 -1397 231 291 15 37 chr13 42093017 42093151 -77651747 + L2 LINE L2 2150 2280 -1034 197 313 0 31 chr13 42093552 42093607 -77651291 + L2 LINE L2 2980 3032 -240 512 365 26 0 chr13 42093607 42093796 -77651102 - MER91A DNA MER1_type -2 194 1 225 132 0 0 chr13 42093971 42094009 -77650889 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 188 234 0 43 chr13 42094999 42095046 -77649852 - MIR SINE MIR -115 147 103 294 29 0 0 chr13 42095625 42095660 -77649238 + (CA)n Simple_repeat Simple_repeat 2 36 0 309 228 69 40 chr13 42095742 42095843 -77649055 - L2 LINE L2 0 3272 3169 2342 190 168 25 chr13 42098000 42098767 -77646131 + MER97b DNA MER1_type? 2 878 -175 414 238 82 34 chr13 42098865 42099071 -77645827 + MER97c DNA MER1_type? 870 1085 -5 191 290 120 22 chr13 42099760 42099868 -77645030 - MIR SINE MIR -62 146 44 265 341 40 16 chr13 42099971 42100097 -77644801 - L3 LINE CR1 -1108 469 341 545 261 73 58 chr13 42102068 42102494 -77642404 - L1M4 LINE L1 -2130 4016 3581 1792 137 87 0 chr13 42102494 42102771 -77642127 - AluJb SINE Alu -7 305 5 545 261 73 58 chr13 42102771 42102807 -77642091 - L1M4 LINE L1 -2565 3581 3547 420 252 122 34 chr13 42154749 42154896 -77590002 + MLT1J2 LTR MaLR 284 443 -7 917 193 21 11 chr13 42154897 42155084 -77589814 - MER5A DNA MER1_type 0 189 1 319 263 44 44 chr13 42155415 42155529 -77589369 - MIR SINE MIR -30 232 119 476 302 34 7 chr13 42158480 42158629 -77586269 + MER5A DNA MER1_type 35 187 -2 408 149 284 35 chr13 42159806 42159947 -77584951 - MER5B DNA MER1_type 0 178 3 2095 122 20 0 chr13 42160194 42160488 -77584410 - AluSx SINE Alu -10 302 3 2338 93 13 3 chr13 42161092 42161393 -77583505 + AluSc SINE Alu 3 306 -3 238 49 24 24 chr13 42161871 42161912 -77582986 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 251 207 207 35 chr13 42162413 42162529 -77582369 + MIR SINE MIR 63 198 -64 186 283 50 0 chr13 42162608 42162668 -77582230 - L2 LINE L2 0 3272 3210 33 43 0 0 chr13 42164681 42164728 -77580170 + AT_rich Low_complexity Low_complexity 1 47 0 425 288 140 14 chr13 42164758 42165043 -77579855 - L1ME4a LINE L1 -74 6047 5727 200 200 0 0 chr13 42167938 42167973 -77576925 + A-rich Low_complexity Low_complexity 2 36 0 29 28 0 0 chr13 42168701 42168737 -77576161 + AT_rich Low_complexity Low_complexity 1 36 0 2511 64 0 0 chr13 42168892 42169187 -77575711 + AluY SINE Alu 1 295 -16 306 204 11 102 chr13 42169936 42170024 -77574874 - MIR SINE MIR -10 252 173 333 255 0 0 chr13 42170137 42170235 -77574663 + GA-rich Low_complexity Low_complexity 1 98 0 1075 136 15 97 chr13 42172319 42172525 -77572373 - MER5A DNA MER1_type 0 189 1 477 227 162 25 chr13 42173843 42174041 -77570857 + MIR SINE MIR 33 257 -5 344 296 150 23 chr13 42174035 42174255 -77570643 + MIR SINE MIR 15 262 0 * 186 103 0 0 chr13 42174308 42174337 -77570561 + (CA)n Simple_repeat Simple_repeat 1 29 0 346 363 76 56 chr13 42179994 42180297 -77564601 - L2 LINE L2 0 3272 2964 330 221 137 30 chr13 42180627 42180758 -77564140 - L2 LINE L2 -928 2386 2242 206 146 0 24 chr13 42180890 42180931 -77563967 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2202 131 34 0 chr13 42183331 42183659 -77561239 - MER1B DNA MER1_type 0 339 1 419 121 55 33 chr13 42184188 42184279 -77560619 - L1MC4a LINE L1 -1873 5935 5843 253 285 60 26 chr13 42184282 42184433 -77560465 - L1MC4a LINE L1 -400 5721 5566 2257 96 7 0 chr13 42184798 42185091 -77559807 - AluSx SINE Alu -17 295 1 571 312 30 30 chr13 42185111 42185157 -77559741 - MIR SINE MIR -15 247 202 989 217 27 0 chr13 42185157 42185341 -77559557 + MER5A DNA MER1_type 1 189 0 571 312 30 30 chr13 42185341 42185531 -77559367 - MIR SINE MIR -59 203 11 244 301 211 35 chr13 42185564 42185763 -77559135 - L2 LINE L2 -33 3239 3006 387 309 115 22 chr13 42186112 42186251 -77558647 + MIR3 SINE MIR 35 186 -22 329 212 0 0 chr13 42186264 42186330 -77558568 - MER58 DNA MER1_type 0 2420 2355 219 69 0 0 chr13 42186937 42186966 -77557932 + (A)n Simple_repeat Simple_repeat 1 29 0 206 250 0 21 chr13 42187494 42187542 -77557356 + L2 LINE L2 3263 3309 -4 508 303 12 18 chr13 42187898 42188063 -77556835 - MIR3 SINE MIR -7 201 38 191 263 184 18 chr13 42188660 42188774 -77556124 - L2 LINE L2 -225 3047 2915 231 36 0 0 chr13 42188907 42188935 -77555963 + (CA)n Simple_repeat Simple_repeat 2 29 0 521 269 64 18 chr13 42188937 42189108 -77555790 + MIR3 SINE MIR 21 199 -9 2692 39 0 0 chr13 42189845 42190153 -77554745 - AluY SINE Alu -3 308 1 418 310 131 34 chr13 42192147 42192184 -77552714 - L2 LINE L2 -176 3137 3105 2373 79 3 0 chr13 42192184 42192476 -77552422 + AluY SINE Alu 1 293 -18 418 310 131 34 chr13 42192476 42192831 -77552067 - L2 LINE L2 -208 3105 2705 465 275 88 92 chr13 42192888 42193401 -77551497 + MLT1J LTR MaLR 1 511 0 396 345 71 16 chr13 42193418 42193673 -77551225 - L2 LINE L2 -729 2585 2317 285 217 67 0 chr13 42197035 42197095 -77547803 - L2 LINE L2 -3 3269 3206 295 320 89 92 chr13 42199167 42199483 -77545415 + L2 LINE L2 2831 3145 -127 3087 162 19 32 chr13 42199598 42200130 -77544768 + Tigger7 DNA MER2_type 1 525 -208 695 120 0 0 chr13 42200124 42200216 -77544682 + Tigger7 DNA MER2_type 2396 2487 0 * 316 256 264 0 chr13 42200759 42200888 -77544010 + MER5A DNA MER1_type 27 189 0 346 154 10 135 chr13 42201225 42201329 -77543569 + LTR37A LTR ERV1 94 184 -242 693 179 37 0 chr13 42201350 42201484 -77543414 + LTR37A LTR ERV1 288 426 0 2418 80 3 0 chr13 42201613 42201913 -77542985 - AluSp SINE Alu -12 301 1 4173 11 0 4 chr13 42202557 42203050 -77541848 - L1PA2 LINE L1 0 6155 5702 21 0 0 0 chr13 42204073 42204094 -77540804 + AT_rich Low_complexity Low_complexity 1 21 0 272 234 85 78 chr13 42204126 42204267 -77540631 + L2 LINE L2 3171 3312 -1 182 74 0 37 chr13 42204390 42204417 -77540481 - L2 LINE L2 -20 3252 3227 235 312 62 63 chr13 42205758 42206134 -77538764 + L2 LINE L2 2675 3091 -181 1053 180 115 14 chr13 42209451 42209668 -77535230 - MER8 DNA MER2_type 0 239 1 493 299 7 0 chr13 42209769 42209913 -77534985 - MIR SINE MIR -2 260 116 306 0 0 0 chr13 42213325 42213359 -77531539 + (CA)n Simple_repeat Simple_repeat 2 35 0 185 297 0 31 chr13 42213459 42213523 -77531375 + L3b LINE CR1 1368 1429 -154 230 147 0 0 chr13 42214123 42214157 -77530741 + MARNA DNA Mariner 75 108 -478 240 292 22 11 chr13 42214184 42214273 -77530625 + MIR3 SINE MIR 115 204 -4 285 308 29 19 chr13 42214374 42214478 -77530420 - MIR SINE MIR -111 151 47 237 216 112 64 chr13 42214626 42214751 -77530147 + MARNA DNA Mariner 407 537 -49 2309 85 3 7 chr13 42217451 42217744 -77527154 - AluY SINE Alu -19 292 1 193 298 0 18 chr13 42217758 42217815 -77527083 + MIR3 SINE MIR 105 160 -48 659 273 14 43 chr13 42217883 42218092 -77526806 + MIR SINE MIR 58 260 -2 251 349 112 13 chr13 42218196 42218348 -77526550 - L2 LINE L2 -2 3270 3104 1961 175 51 66 chr13 42218428 42218896 -77526002 + MLT1C LTR MaLR 4 464 -3 190 194 0 60 chr13 42218924 42218991 -77525907 - L2 LINE L2 -209 3063 3001 652 268 18 0 chr13 42219934 42220098 -77524800 - MIR3 SINE MIR -1 207 41 348 335 42 32 chr13 42220141 42220425 -77524473 - L3 LINE CR1 -110 1467 1181 275 217 145 26 chr13 42220680 42220832 -77524066 - L3 LINE CR1 -607 970 801 2406 74 0 0 chr13 42221254 42221550 -77523348 + AluY SINE Alu 1 296 -15 218 370 92 8 chr13 42223098 42223217 -77521681 + L2 LINE L2 3143 3271 -1 483 230 7 61 chr13 42224088 42224236 -77520662 + MIR SINE MIR 113 252 -10 204 200 0 0 chr13 42224743 42224788 -77520110 + (CA)n Simple_repeat Simple_repeat 1 45 0 488 111 12 0 chr13 42225226 42225307 -77519591 + (TTCCC)n Simple_repeat Simple_repeat 3 84 0 314 96 0 19 chr13 42225339 42225391 -77519507 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 2202 133 3 0 chr13 42225402 42225711 -77519187 - AluJb SINE Alu 0 312 3 227 271 0 0 chr13 42226398 42226457 -77518441 + GA-rich Low_complexity Low_complexity 1 59 0 237 307 150 20 chr13 42226601 42226754 -77518144 - L2 LINE L2 0 3272 3100 211 218 0 18 chr13 42226834 42226889 -77518009 + L2 LINE L2 3173 3226 -46 1808 171 38 97 chr13 42228214 42228635 -77516263 + MSTD LTR MaLR 1 396 0 2910 229 62 28 chr13 42229207 42229971 -77514927 + L1MEc LINE L1 36 825 -5571 1535 236 41 41 chr13 42229978 42230439 -77514459 + MLT1D LTR MaLR 43 503 -2 2785 266 37 20 chr13 42230454 42231565 -77513333 + L1MEc LINE L1 816 1945 -4451 5838 237 70 29 chr13 42231594 42233624 -77511274 + L1MEc LINE L1 2101 4185 -2030 891 212 59 47 chr13 42233630 42233977 -77510921 + L1ME1 LINE L1 5829 6331 -3 779 273 97 2 chr13 42235156 42235378 -77509520 + MIR SINE MIR 11 262 0 406 328 64 0 chr13 42235566 42235737 -77509161 - MIR SINE MIR -2 260 79 316 283 60 33 chr13 42236782 42236966 -77507932 + L1ME4a LINE L1 5827 6015 -106 24 32 0 0 chr13 42237011 42237042 -77507856 + AT_rich Low_complexity Low_complexity 1 31 0 2083 141 0 0 chr13 42237052 42237357 -77507541 + AluSx SINE Alu 1 305 -7 967 303 80 34 chr13 42238208 42238683 -77506215 - L2 LINE L2 0 3313 2817 451 225 12 12 chr13 42238842 42239011 -77505887 + (CATATA)n Simple_repeat Simple_repeat 4 172 0 202 346 29 37 chr13 42239854 42239990 -77504908 - L2 LINE L2 -178 3094 2960 246 284 59 0 chr13 42240376 42240478 -77504420 + L1ME LINE L1 5638 5745 -376 240 244 78 11 chr13 42240571 42240661 -77504237 + L1ME LINE L1 5532 5627 -494 264 239 15 0 chr13 42240807 42240874 -77504024 - MIR SINE MIR -98 164 97 1021 319 124 35 chr13 42242208 42243476 -77501422 + L2 LINE L2 1832 3219 -94 2068 92 0 54 chr13 42243565 42243860 -77501038 + AluSq SINE Alu 1 279 -34 305 159 16 0 chr13 42244718 42244781 -77500117 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 2398 164 60 2 chr13 42244948 42245351 -77499547 + MSTB LTR MaLR 1 426 0 337 301 128 8 chr13 42246086 42246219 -77498679 + MER117 DNA MER1_type 7 155 -42 1863 158 3 30 chr13 42246403 42246707 -77498191 + AluJb SINE Alu 1 296 -16 2241 91 7 3 chr13 42247553 42247849 -77497049 - AluSq SINE Alu -16 297 1 2083 165 36 17 chr13 42248985 42249343 -77495555 - MLT1A1 LTR MaLR 0 365 1 335 209 15 0 chr13 42249694 42249761 -77495137 + Tigger2 DNA MER2_type 2 69 -2649 * 2575 157 11 27 chr13 42249752 42249962 -77494936 + Tigger2 DNA MER2_type 2274 2486 -232 1670 164 55 10 chr13 42249962 42250255 -77494643 - AluJb SINE Alu -6 306 1 2575 157 11 27 chr13 42250255 42250495 -77494403 + Tigger2 DNA MER2_type 2486 2717 -1 404 237 137 8 chr13 42250788 42250919 -77493979 - MIR SINE MIR -86 176 29 189 318 199 26 chr13 42251024 42251568 -77493330 + L2 LINE L2 864 1501 -1813 515 290 120 14 chr13 42252080 42252297 -77492601 + MIR SINE MIR 23 262 0 2935 258 52 22 chr13 42252404 42253061 -77491837 + L1MEc LINE L1 35 730 -5666 207 0 0 0 chr13 42253061 42253084 -77491814 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2935 258 52 22 chr13 42253084 42253373 -77491525 + L1MEc LINE L1 730 1009 -5387 219 252 39 10 chr13 42254164 42254267 -77490631 + (TA)n Simple_repeat Simple_repeat 2 107 0 23 0 0 0 chr13 42254437 42254460 -77490438 + AT_rich Low_complexity Low_complexity 1 23 0 1694 169 32 23 chr13 42254728 42255036 -77489862 + AluJb SINE Alu 1 311 -1 192 200 25 0 chr13 42255115 42255155 -77489743 + L2 LINE L2 3210 3250 -22 192 380 0 0 chr13 42255659 42255709 -77489189 + L2 LINE L2 3005 3054 -259 656 291 102 52 chr13 42256523 42257065 -77487833 + L2 LINE L2 2197 2765 -549 207 320 301 0 chr13 42257125 42257228 -77487670 + L2 LINE L2 3137 3270 -2 2568 47 0 3 chr13 42257660 42257960 -77486938 - AluY SINE Alu -12 299 1 1180 35 42 14 chr13 42258601 42258744 -77486154 - L1PA8 LINE L1 -8 6164 6018 395 254 37 15 chr13 42258758 42258892 -77486006 - MER103 DNA DNA -8 158 22 306 246 72 0 chr13 42259612 42259681 -77485217 + L3 LINE CR1 1478 1551 -26 274 342 34 0 chr13 42259851 42260000 -77484898 + L1ME LINE L1 4736 4889 -1257 22 0 0 0 chr13 42260208 42260230 -77484668 + AT_rich Low_complexity Low_complexity 1 22 0 381 321 37 0 chr13 42260413 42260575 -77484323 + L1ME LINE L1 5564 5731 -390 278 275 169 50 chr13 42260634 42260794 -77484104 - MIR SINE MIR -10 252 74 27 0 0 0 chr13 42260860 42260887 -77484011 + AT_rich Low_complexity Low_complexity 1 27 0 333 118 0 0 chr13 42261770 42261821 -77483077 + (CA)n Simple_repeat Simple_repeat 2 52 0 234 214 265 20 chr13 42262064 42262162 -77482736 + L2 LINE L2 3179 3300 -13 183 80 0 0 chr13 42262162 42262187 -77482711 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 246 318 139 16 chr13 42262578 42262707 -77482191 + MIR SINE MIR 10 154 -108 357 86 0 0 chr13 42264852 42264910 -77479988 + (TA)n Simple_repeat Simple_repeat 1 58 0 25 31 0 0 chr13 42265133 42265165 -77479733 + AT_rich Low_complexity Low_complexity 1 32 0 6109 58 6 323 chr13 42266411 42268396 -77476502 - SVA Other Other 0 1386 32 271 0 0 49 chr13 42268397 42268438 -77476460 + (GGGAGA)n Simple_repeat Simple_repeat 1 39 0 2127 118 7 0 chr13 42269095 42269382 -77475516 + AluSx SINE Alu 1 289 -23 2284 114 7 0 chr13 42269414 42269721 -77475177 + AluSx SINE Alu 1 309 -3 1260 108 0 0 chr13 42270103 42270269 -77474629 + AluSg SINE Alu 38 203 -107 1372 196 0 91 chr13 42270409 42270751 -77474147 + AluJo SINE Alu 1 311 -1 2119 124 3 0 chr13 42270858 42271149 -77473749 + AluSx SINE Alu 1 292 -20 483 176 24 0 chr13 42272397 42272482 -77472416 - Tigger5 DNA MER2_type 0 2323 2237 546 193 0 0 chr13 42272493 42272581 -77472317 + Tigger5 DNA MER2_type 1 88 -2235 250 175 0 0 chr13 42272644 42272684 -77472214 - Tigger5 DNA MER2_type -2283 40 1 186 289 173 41 chr13 42272806 42273003 -77471895 + L2 LINE L2 3074 3296 -17 40 49 0 0 chr13 42273003 42273064 -77471834 + AT_rich Low_complexity Low_complexity 1 61 0 303 274 24 0 chr13 42273089 42273173 -77471725 + GA-rich Low_complexity Low_complexity 3 88 0 361 247 12 0 chr13 42274148 42274233 -77470665 + Tigger7 DNA MER2_type 2402 2487 0 361 197 82 109 chr13 42278480 42278627 -77466271 - MIR SINE MIR -81 181 39 328 340 54 14 chr13 42278762 42278909 -77465989 - L2 LINE L2 0 3313 3161 392 320 155 31 chr13 42282353 42282805 -77462093 + L2 LINE L2 2782 3288 -25 2850 150 78 23 chr13 42282894 42283420 -77461478 + MER74A LTR ERVL 2 556 -2 1997 135 10 16 chr13 42283527 42283839 -77461059 + AluSx SINE Alu 1 310 -2 822 133 66 46 chr13 42284127 42284214 -77460684 + L1MC1 LINE L1 6161 6254 -79 2625 119 86 28 chr13 42284214 42284644 -77460254 - MSTB2 LTR MaLR -2 455 1 822 133 66 46 chr13 42284644 42284707 -77460191 + L1MC1 LINE L1 6254 6314 -19 394 195 0 26 chr13 42285795 42285872 -77459026 - MER116 DNA Mariner -5 75 1 225 0 0 0 chr13 42286106 42286131 -77458767 + (T)n Simple_repeat Simple_repeat 1 25 0 200 317 50 0 chr13 42288896 42288956 -77455942 - L2 LINE L2 -3 3310 3248 210 360 138 14 chr13 42289306 42289595 -77455303 - L2 LINE L2 -519 2795 2471 647 209 27 75 chr13 42289860 42290047 -77454851 - MER5B DNA MER1_type 0 178 1 1179 97 6 45 chr13 42290210 42290386 -77454512 - AluSq SINE Alu -11 302 134 1899 92 110 14 chr13 42290386 42290668 -77454230 - AluSg1 SINE Alu 0 309 1 293 366 71 0 chr13 42290885 42290997 -77453901 + L2 LINE L2 3134 3253 -19 993 168 77 10 chr13 42292067 42292275 -77452623 + L1MC4a LINE L1 7306 7527 -281 183 390 26 39 chr13 42294644 42294798 -77450100 - L2 LINE L2 -5 3267 3116 270 289 99 21 chr13 42294877 42295019 -77449879 - L2 LINE L2 -192 3080 2928 290 260 130 84 chr13 42296097 42296251 -77448647 + MIR3 SINE MIR 43 203 -5 2450 74 0 0 chr13 42296294 42296591 -77448307 - AluY SINE Alu -14 297 1 186 224 75 45 chr13 42297446 42297513 -77447385 - L2 LINE L2 -16 3297 3229 224 286 0 0 chr13 42298238 42298287 -77446611 + L2 LINE L2 3246 3294 -19 377 161 74 12 chr13 42298374 42298455 -77446443 + L2 LINE L2 3223 3308 -5 21 0 0 0 chr13 42299436 42299457 -77445441 + AT_rich Low_complexity Low_complexity 1 21 0 2561 199 18 32 chr13 42301526 42302084 -77442814 - MER74A LTR ERVL -6 552 3 308 291 284 0 chr13 42302122 42302263 -77442635 - MER5A DNA MER1_type 0 189 9 349 302 81 29 chr13 42302338 42302510 -77442388 - MIR SINE MIR -16 246 66 735 265 113 4 chr13 42302972 42303210 -77441688 - L2 LINE L2 -50 3263 3000 3030 75 2 0 chr13 42303291 42303691 -77441207 - L1PA7 LINE L1 -1 6153 5753 2072 125 3 0 chr13 42303701 42303990 -77440908 - AluSx SINE Alu -22 290 1 198 0 0 0 chr13 42304548 42304570 -77440328 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 413 255 21 55 chr13 42305301 42305446 -77439452 - HAL1 LINE L1 -7 2500 2361 2587 253 80 50 chr13 42305609 42306774 -77438124 - HAL1 LINE L1 -115 2392 1193 2095 158 6 28 chr13 42306802 42307163 -77437735 + THE1B LTR MaLR 1 353 -11 431 243 83 74 chr13 42307173 42307498 -77437400 - HAL1 LINE L1 -1358 1149 822 323 319 93 54 chr13 42308135 42308339 -77436559 - HAL1 LINE L1 -2294 213 2 253 280 27 0 chr13 42308642 42308717 -77436181 + GA-rich Low_complexity Low_complexity 4 80 0 213 214 0 0 chr13 42309081 42309123 -77435775 + (TATG)n Simple_repeat Simple_repeat 2 43 0 223 309 155 0 chr13 42309441 42309525 -77435373 + MIR SINE MIR 152 248 -14 2137 113 0 7 chr13 42310881 42311172 -77433726 + AluSg SINE Alu 2 290 -20 403 222 0 0 chr13 42311604 42311676 -77433222 + MER81 DNA DNA 1 72 -42 2492 59 20 0 chr13 42311688 42311992 -77432906 + AluY SINE Alu 2 311 0 395 258 168 39 chr13 42312208 42312363 -77432535 - MER5B DNA MER1_type -2 176 2 203 324 54 14 chr13 42312632 42312706 -77432192 - L2 LINE L2 -40 3273 3197 403 348 108 42 chr13 42315051 42315404 -77429494 - L2 LINE L2 0 3272 2897 3911 203 116 78 chr13 42315748 42316310 -77428588 - L1MC3 LINE L1 -12 7773 7234 312 212 61 0 chr13 42316310 42316376 -77428522 - MLT1F1 LTR MaLR -453 114 45 3911 203 116 78 chr13 42316376 42317064 -77427834 - L1MC3 LINE L1 -551 7234 6408 22 0 0 0 chr13 42317095 42317117 -77427781 + AT_rich Low_complexity Low_complexity 1 22 0 416 242 102 16 chr13 42317170 42317298 -77427600 + MLT1J2 LTR MaLR 35 173 -277 791 268 64 38 chr13 42317372 42317793 -77427105 + L1ME2 LINE L1 3873 4304 -1842 4125 215 84 41 chr13 42317798 42319353 -77425545 - L1MB7 LINE L1 -1 6168 4681 2244 87 3 3 chr13 42319353 42319639 -77425259 - AluSc SINE Alu -13 296 11 4125 215 84 41 chr13 42319639 42319679 -77425219 - L1MB7 LINE L1 -1488 4681 4644 782 160 0 8 chr13 42319679 42319810 -77425088 + FLAM_C SINE Alu 4 133 0 4125 215 84 41 chr13 42319810 42320631 -77424267 - L1MB7 LINE L1 -1525 4644 3649 2457 242 85 49 chr13 42320635 42321407 -77423491 + L1ME2 LINE L1 4322 5065 -1099 1179 117 0 0 chr13 42321407 42321587 -77423311 + (TA)n Simple_repeat Simple_repeat 1 180 0 2457 242 85 49 chr13 42321587 42322590 -77422308 + L1ME2 LINE L1 5065 6154 -10 2311 110 0 0 chr13 42322697 42323006 -77421892 + AluY SINE Alu 1 309 -2 21 57 0 0 chr13 42323131 42323166 -77421732 + AT_rich Low_complexity Low_complexity 1 35 0 203 100 0 50 chr13 42323179 42323219 -77421679 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 433 271 149 11 chr13 42323221 42323402 -77421496 + MIR SINE MIR 57 262 0 204 40 0 0 chr13 42326963 42326988 -77417910 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 42328212 42328233 -77416665 + AT_rich Low_complexity Low_complexity 1 21 0 227 223 0 96 chr13 42328236 42328330 -77416568 + L1ME4a LINE L1 5880 5964 -157 191 111 0 28 chr13 42328333 42328369 -77416529 + (TA)n Simple_repeat Simple_repeat 1 35 0 252 59 0 0 chr13 42329223 42329257 -77415641 + (T)n Simple_repeat Simple_repeat 1 34 0 2149 121 0 9 chr13 42331092 42331407 -77413491 - AluSq SINE Alu -1 312 1 231 288 0 17 chr13 42331407 42331466 -77413432 + MER20B DNA MER1_type 122 179 -604 264 333 33 8 chr13 42331556 42331676 -77413222 + L3b LINE CR1 1108 1230 -353 2179 170 30 24 chr13 42331806 42332271 -77412627 + L1MB1 LINE L1 3287 3754 -2392 4456 180 34 9 chr13 42332432 42333820 -77411078 + L1MB1 LINE L1 4744 6166 -2 227 343 52 52 chr13 42333854 42333988 -77410910 + L3b LINE CR1 1443 1576 -7 186 43 0 0 chr13 42334622 42334645 -77410253 + (CA)n Simple_repeat Simple_repeat 2 24 0 276 296 91 15 chr13 42335615 42335747 -77409151 - MIR SINE MIR -9 253 112 1931 147 6 13 chr13 42336962 42337097 -77407801 + AluSx SINE Alu 1 135 -177 2386 88 0 0 chr13 42337097 42337402 -77407496 + AluY SINE Alu 1 305 -6 1931 147 6 13 chr13 42337402 42337580 -77407318 + AluSx SINE Alu 135 312 0 565 311 96 0 chr13 42337842 42338051 -77406847 + MIR SINE MIR 26 254 -8 2337 91 7 3 chr13 42338059 42338356 -77406542 + AluSx SINE Alu 1 298 -14 1104 198 9 91 chr13 42339353 42339672 -77405226 + MLT1A1 LTR MaLR 56 348 -17 6438 205 98 60 chr13 42339682 42341110 -77403788 + MLT1A1-int LTR MaLR 1 1503 -232 1928 151 0 10 chr13 42341110 42341408 -77403490 - AluSx SINE Alu -15 297 3 6438 205 98 60 chr13 42341408 42341651 -77403247 + MLT1A1-int LTR MaLR 1503 1735 0 1081 223 57 79 chr13 42341654 42342022 -77402876 + MLT1A1 LTR MaLR 4 363 -2 2452 164 31 2 chr13 42342133 42342547 -77402351 - MSTB LTR MaLR 0 426 1 1972 128 24 0 chr13 42342655 42342944 -77401954 + AluSx SINE Alu 1 296 -16 795 265 38 93 chr13 42343257 42343548 -77401350 + MLT1E LTR MaLR 231 505 -88 484 288 118 26 chr13 42343645 42343951 -77400947 + MER93a LTR ERV1 58 391 -11 2191 119 58 73 chr13 42343958 42344371 -77400527 + MLT2D LTR ERVL 2 408 -6 2252 198 19 50 chr13 42344374 42344839 -77400059 - MLT2B3 LTR ERVL -23 531 81 349 97 28 83 chr13 42344951 42344982 -77399916 - MLT2B3 LTR ERVL -486 68 37 1974 132 46 32 chr13 42344982 42345352 -77399546 - THE1C LTR MaLR 0 375 1 349 97 28 83 chr13 42345352 42345392 -77399506 - MLT2B3 LTR ERVL -517 37 1 1918 240 107 56 chr13 42346364 42347544 -77397354 - L1ME2 LINE L1 -15 6149 4866 1704 176 13 10 chr13 42347544 42347850 -77397048 - AluJo SINE Alu -5 307 1 1918 240 107 56 chr13 42347850 42348205 -77396693 - L1ME2 LINE L1 -1298 4866 4530 1407 246 101 58 chr13 42348210 42349001 -77395897 - L1ME2 LINE L1 -1778 4368 3544 21 36 0 0 chr13 42400699 42400727 -77344171 + AT_rich Low_complexity Low_complexity 1 28 0 454 246 85 106 chr13 42400934 42401170 -77343728 + MIR SINE MIR 21 251 -11 1583 169 86 0 chr13 42401318 42401585 -77343313 + AluJb SINE Alu 1 290 -22 360 133 0 0 chr13 42401585 42401645 -77343253 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 319 172 62 0 chr13 42401660 42401724 -77343174 + L1M1 LINE L1 14 81 -7484 * 5773 179 36 36 chr13 42401722 42403755 -77341143 + L1M1 LINE L1 3128 5183 -2382 1214 112 28 0 chr13 42403755 42403970 -77340928 + L1M1 LINE L1 5854 6074 -1491 373 65 65 0 chr13 42403970 42404030 -77340868 + L1MA3 LINE L1 6240 6305 0 699 317 106 26 chr13 42404508 42404924 -77339974 - L2 LINE L2 0 3313 2865 22 35 0 0 chr13 42406023 42406052 -77338846 + AT_rich Low_complexity Low_complexity 1 29 0 340 211 11 22 chr13 42408423 42408513 -77336385 + MER117 DNA MER1_type 5 93 -104 243 182 39 13 chr13 42408917 42408994 -77335904 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 225 293 107 27 chr13 42409600 42409675 -77335223 + L2 LINE L2 3155 3235 -37 259 328 99 59 chr13 42409687 42410261 -77334637 - L2 LINE L2 -850 2464 1868 2164 77 7 44 chr13 42411008 42411328 -77333570 + AluSp SINE Alu 1 309 0 311 246 15 0 chr13 42411383 42411448 -77333450 + MIR3 SINE MIR 117 182 -26 192 77 0 0 chr13 42411704 42411730 -77333168 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 213 39 0 0 chr13 42413231 42413257 -77331641 + (CACAA)n Simple_repeat Simple_repeat 3 28 0 521 150 8 92 chr13 42416088 42416208 -77328690 + MER33 DNA MER1_type 27 136 -188 * 613 189 27 7 chr13 42416197 42416345 -77328553 + MLT1D LTR MaLR 353 503 -2 285 200 15 0 chr13 42416345 42416410 -77328488 + MER33 DNA MER1_type 258 323 -1 354 291 34 0 chr13 42416414 42416531 -77328367 + L2 LINE L2 3192 3312 -1 276 253 0 53 chr13 42416569 42416644 -77328254 - L2 LINE L2 0 3313 3243 396 208 12 66 chr13 42416644 42416741 -77328157 + L1MB5 LINE L1 5961 6049 -125 2385 102 0 0 chr13 42416741 42417044 -77327854 - AluSx SINE Alu -9 303 1 396 208 12 66 chr13 42417044 42417066 -77327832 + L1MB5 LINE L1 6049 6071 -103 488 200 37 126 chr13 42417142 42417357 -77327541 - MLT1A1 LTR MaLR -169 196 1 421 269 149 62 chr13 42418139 42418414 -77326484 + L2 LINE L2 3015 3313 0 520 206 136 39 chr13 42418635 42418790 -77326108 + MIR SINE MIR 82 251 -11 368 369 78 18 chr13 42418799 42419016 -77325882 + L3 LINE CR1 1329 1558 -19 2828 16 0 0 chr13 42420735 42421044 -77323854 - AluYa5 SINE Alu -2 309 1 422 262 8 16 chr13 42421278 42421400 -77323498 + MER20B DNA MER1_type 58 178 -605 321 303 67 52 chr13 42421600 42421867 -77323031 + L1M4 LINE L1 2670 2940 -3206 1362 157 0 9 chr13 42422179 42422402 -77322496 - AluJo SINE Alu -5 307 87 264 158 0 0 chr13 42422587 42422644 -77322254 + (CA)n Simple_repeat Simple_repeat 2 58 0 373 267 46 59 chr13 42422644 42422947 -77321951 + L1M4 LINE L1 3524 3822 -2324 2257 198 39 6 chr13 42424569 42425058 -77319840 + MLT1D LTR MaLR 1 505 0 2304 98 0 3 chr13 42425183 42425489 -77319409 - AluSg SINE Alu -5 305 1 821 141 6 24 chr13 42425497 42425667 -77319231 - L1MA6 LINE L1 0 6300 6134 2190 89 7 36 chr13 42426403 42426705 -77318193 + AluSc SINE Alu 9 301 -8 373 344 73 38 chr13 42426840 42427128 -77317770 - L3 LINE CR1 -343 1234 937 1321 306 66 80 chr13 42428600 42429137 -77315761 + L1MEd LINE L1 23 566 -5553 1367 201 21 28 chr13 42429137 42429420 -77315478 - AluJo SINE Alu -31 281 1 1321 306 66 80 chr13 42429420 42429984 -77314914 + L1MEd LINE L1 566 1109 -5010 2100 128 0 13 chr13 42430105 42430403 -77314495 + AluSc SINE Alu 1 294 -15 719 275 107 46 chr13 42430421 42431046 -77313852 + L1ME3A LINE L1 5294 5956 -214 207 0 0 0 chr13 42433082 42433105 -77311793 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 495 0 0 0 chr13 42433282 42433337 -77311561 + (CA)n Simple_repeat Simple_repeat 2 56 0 607 295 52 19 chr13 42434166 42434376 -77310522 - MIR SINE MIR -14 248 32 352 282 8 8 chr13 42434466 42434583 -77310315 + LTR16B LTR ERVL 35 151 -313 456 77 0 0 chr13 42435025 42435090 -77309808 - L1PA6 LINE L1 -1 6153 6089 322 265 49 29 chr13 42436425 42436527 -77308371 - L2 LINE L2 -7 3265 3162 1909 147 119 16 chr13 42436527 42436915 -77307983 - MSTA LTR MaLR 0 428 1 1619 274 100 10 chr13 42437029 42437661 -77307237 + L2 LINE L2 2440 3151 -162 303 274 12 0 chr13 42437704 42437788 -77307110 - MER63A DNA MER1_type -26 184 100 476 259 38 8 chr13 42437871 42438002 -77306896 + L2 LINE L2 3178 3312 -1 16692 138 29 19 chr13 42438728 42441596 -77303302 + L1MA3 LINE L1 27 2921 -4644 371 215 56 0 chr13 42441594 42441701 -77303197 + L1MA3 LINE L1 4246 4358 -3207 * 362 236 21 126 chr13 42441865 42442056 -77302842 + L1ME LINE L1 5254 5424 -2384 255 295 38 0 chr13 42442161 42442266 -77302632 + L1ME LINE L1 5496 5604 -517 203 0 0 36 chr13 42442973 42443001 -77301897 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7560 29 18 0 chr13 42443001 42443965 -77300933 - L1PA3 LINE L1 -6 6149 5182 276 206 0 0 chr13 42443966 42444034 -77300864 + L1MA3 LINE L1 4349 4416 -3149 1456 179 19 0 chr13 42444034 42444302 -77300596 - L1MA3 LINE L1 -2094 5471 5199 6700 136 17 32 chr13 42444309 42446342 -77298556 + L1MA3 LINE L1 5486 7480 -244 1731 136 39 11 chr13 42446342 42446622 -77298276 + AluJb SINE Alu 1 288 -24 6700 136 17 32 chr13 42446622 42446864 -77298034 + L1MA3 LINE L1 7480 7724 0 195 386 68 11 chr13 42447936 42448024 -77296874 - L2 LINE L2 -32 3240 3148 278 191 0 0 chr13 42448642 42448689 -77296209 + L2 LINE L2 3210 3256 -16 436 169 102 8 chr13 42452591 42452709 -77292189 + L1MA8 LINE L1 6161 6289 -2 716 140 67 61 chr13 42452913 42453077 -77291821 + L1MB8 LINE L1 6008 6172 -6 1110 179 93 4 chr13 42453090 42453369 -77291529 + L1 LINE L1 3183 3486 -2660 1181 123 15 20 chr13 42453369 42453564 -77291334 + AluSg/x SINE Alu 115 308 -4 215 233 0 0 chr13 42454184 42454227 -77290671 + CT-rich Low_complexity Low_complexity 2 44 0 608 245 155 0 chr13 42454440 42454595 -77290303 + MER5A DNA MER1_type 11 189 0 541 254 56 0 chr13 42455023 42455165 -77289733 + MER69A DNA AcHobo 28 177 0 3755 48 0 6 chr13 42455205 42455679 -77289219 - L1PA7 LINE L1 -8 6146 5676 405 172 0 0 chr13 42455689 42455811 -77289087 + (TA)n Simple_repeat Simple_repeat 1 122 0 2161 125 3 0 chr13 42455811 42456108 -77288790 - AluSx SINE Alu -14 298 1 195 129 0 0 chr13 42456532 42456563 -77288335 + (CA)n Simple_repeat Simple_repeat 2 32 0 318 352 57 6 chr13 42456785 42456961 -77287937 - L1ME LINE L1 -320 5801 5617 14506 189 74 16 chr13 42457150 42457498 -77287400 - L1PB1 LINE L1 -316 6551 6225 234 0 0 0 chr13 42457498 42457524 -77287374 + (TTG)n Simple_repeat Simple_repeat 2 27 0 14506 189 74 16 chr13 42457524 42463355 -77281543 - L1PB1 LINE L1 -642 6225 6 9036 234 66 17 chr13 42463369 42469206 -77275692 - L1MDa LINE L1 -421 6215 17 257 194 0 30 chr13 42470427 42470494 -77274404 + (CATA)n Simple_repeat Simple_repeat 2 66 0 824 247 101 22 chr13 42470494 42470515 -77274383 - L1ME4a LINE L1 -157 5964 5946 297 109 0 0 chr13 42470515 42470561 -77274337 + (TG)n Simple_repeat Simple_repeat 2 47 0 824 247 101 22 chr13 42470561 42470855 -77274043 - L1ME4a LINE L1 -175 5946 5624 312 317 45 55 chr13 42471672 42471981 -77272917 - L1ME4a LINE L1 -801 5345 5040 2280 96 0 3 chr13 42472060 42472353 -77272545 - AluSq SINE Alu -21 292 1 30 27 0 0 chr13 42472355 42472392 -77272506 + AT_rich Low_complexity Low_complexity 1 37 0 950 321 68 14 chr13 42472755 42473257 -77271641 + L1MC4a LINE L1 5373 5901 -1907 285 29 0 0 chr13 42473287 42473321 -77271577 + (TG)n Simple_repeat Simple_repeat 1 34 0 31 26 0 0 chr13 42473549 42473587 -77271311 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 42475072 42475100 -77269798 + AT_rich Low_complexity Low_complexity 1 28 0 191 133 22 0 chr13 42475348 42475393 -77269505 + GA-rich Low_complexity Low_complexity 2 47 0 201 264 38 75 chr13 42475977 42476083 -77268815 + MIR SINE MIR 33 134 -74 263 331 90 35 chr13 42476514 42476659 -77268239 + MIR3 SINE MIR 19 171 -37 2223 91 10 3 chr13 42478626 42478924 -77265974 + AluSx SINE Alu 1 300 -12 2011 148 3 0 chr13 42479352 42479650 -77265248 + AluSx SINE Alu 1 299 -13 321 244 85 37 chr13 42479902 42480066 -77264832 + MER104 DNA Tc2 8 179 -1 21 57 0 0 chr13 42480402 42480437 -77264461 + AT_rich Low_complexity Low_complexity 1 35 0 528 122 0 0 chr13 42480460 42480542 -77264356 + (CA)n Simple_repeat Simple_repeat 2 83 0 2297 86 10 3 chr13 42481134 42481437 -77263461 - AluY SINE Alu -6 305 1 477 225 95 35 chr13 42481571 42481740 -77263158 - MIR SINE MIR -10 252 74 244 196 0 0 chr13 42483216 42483267 -77261631 + L1MC4 LINE L1 6653 6703 -1339 236 295 36 18 chr13 42483226 42483338 -77261560 - L1MC4 LINE L1 -1340 6702 6589 * 375 279 95 39 chr13 42484247 42484436 -77260462 - MIR SINE MIR -65 143 1 23 33 0 0 chr13 42484633 42484663 -77260235 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 42484753 42484774 -77260124 + AT_rich Low_complexity Low_complexity 1 21 0 1229 226 17 24 chr13 42484775 42485063 -77259835 - AluJo SINE Alu -26 286 1 1591 245 35 38 chr13 42485475 42485928 -77258970 + LTR40a LTR ERVL 68 519 0 191 312 183 0 chr13 42486525 42486618 -77258280 - MIR SINE MIR -83 125 16 708 236 15 84 chr13 42486718 42486921 -77257977 + MIR SINE MIR 8 196 -66 1879 214 47 31 chr13 42487271 42487758 -77257140 + MLT1D LTR MaLR 1 495 -10 395 267 51 90 chr13 42487854 42488165 -77256733 - L2 LINE L2 0 3313 3015 299 304 31 99 chr13 42489176 42489337 -77255561 + MIR SINE MIR 24 173 -89 670 197 88 23 chr13 42489822 42490009 -77254889 - MER58C DNA MER1_type 0 215 1 2054 112 3 10 chr13 42490162 42490457 -77254441 + AluSq SINE Alu 6 298 -15 261 224 0 31 chr13 42490822 42490920 -77253978 + GA-rich Low_complexity Low_complexity 2 96 0 2061 126 0 3 chr13 42491017 42491310 -77253588 + AluSx SINE Alu 1 292 -20 2056 108 17 7 chr13 42491310 42491598 -77253300 + AluSp SINE Alu 17 307 -6 230 376 40 0 chr13 42491811 42491912 -77252986 - MER91A DNA MER1_type -45 151 47 2260 185 12 7 chr13 42493611 42494033 -77250865 + MLT2C2 LTR ERVL 1 424 -40 23 54 0 0 chr13 42495782 42495819 -77249079 + AT_rich Low_complexity Low_complexity 1 37 0 1344 240 75 16 chr13 42497911 42498470 -77246428 - HAL1 LINE L1 -171 2336 1701 580 283 96 33 chr13 42498505 42498811 -77246087 - HAL1 LINE L1 -1164 1343 1058 2102 128 0 3 chr13 42498811 42499107 -77245791 + AluSx SINE Alu 1 295 -17 580 283 96 33 chr13 42499107 42499980 -77244918 - HAL1 LINE L1 -1449 1058 14 243 195 0 0 chr13 42501447 42501488 -77243410 - L2 LINE L2 -8 3264 3224 183 352 0 34 chr13 42503049 42503137 -77241761 + L2 LINE L2 2994 3078 -194 198 103 0 0 chr13 42503275 42503304 -77241594 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 806 109 36 7 chr13 42505596 42505734 -77239164 - Tigger1 DNA MER2_type -74 2344 2203 * 927 166 0 13 chr13 42505726 42505883 -77239015 - Tigger1 DNA MER2_type -2263 155 1 1844 185 92 14 chr13 42505894 42506327 -77238571 + MLT1C LTR MaLR 1 467 0 475 253 187 0 chr13 42507752 42507902 -77236996 + MER5A DNA MER1_type 9 186 -3 181 250 0 97 chr13 42510028 42510100 -77234798 + L2 LINE L2 3249 3313 0 2010 114 40 0 chr13 42510176 42510488 -77234410 + AluSx SINE Alu 1 323 0 1761 128 94 26 chr13 42510564 42510915 -77233983 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr13 42511526 42511559 -77233339 + AT_rich Low_complexity Low_complexity 1 33 0 738 236 62 36 chr13 42511933 42512209 -77232689 + MER39 LTR ERV1 425 707 0 492 294 78 39 chr13 42513758 42513962 -77230936 - L2 LINE L2 -3 3310 3099 657 309 240 17 chr13 42513990 42514021 -77230877 - L2 LINE L2 -351 2963 2940 2640 174 10 14 chr13 42514021 42514526 -77230372 + L1MC1 LINE L1 5830 6332 -1 657 309 240 17 chr13 42514526 42514960 -77229938 - L2 LINE L2 -374 2940 2394 274 294 0 0 chr13 42515088 42515156 -77229742 + (TA)n Simple_repeat Simple_repeat 2 69 0 203 306 26 45 chr13 42515221 42515366 -77229532 - MIR SINE MIR -63 145 24 283 311 153 22 chr13 42517279 42517462 -77227436 - MIR SINE MIR -50 212 6 345 354 67 12 chr13 42518185 42518349 -77226549 + MIR SINE MIR 28 200 -62 380 330 0 0 chr13 42519191 42519303 -77225595 + MIR3 SINE MIR 87 198 -10 819 296 20 2 chr13 42520109 42520348 -77224550 + MIR SINE MIR 4 244 -18 337 366 49 24 chr13 42520842 42521006 -77223892 - MIR3 SINE MIR -28 180 13 378 0 0 0 chr13 42521291 42521333 -77223565 + (CA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr13 42521665 42521688 -77223210 + AT_rich Low_complexity Low_complexity 1 23 0 657 36 0 0 chr13 42523634 42523718 -77221180 + AluSg/x SINE Alu 219 302 -8 324 0 0 0 chr13 42525478 42525514 -77219384 + (CA)n Simple_repeat Simple_repeat 2 37 0 472 314 35 30 chr13 42525762 42525931 -77218967 - MIR SINE MIR -51 211 42 382 322 24 97 chr13 42527257 42527630 -77217268 - L2 LINE L2 -27 3245 2900 272 257 0 40 chr13 42527667 42527741 -77217157 - L2 LINE L2 -538 2776 2706 790 318 69 40 chr13 42527835 42528029 -77216869 - L2 LINE L2 -609 2705 2518 953 243 14 9 chr13 42528029 42528251 -77216647 - MER58A DNA MER1_type -1 223 1 790 318 69 40 chr13 42528251 42528506 -77216392 - L2 LINE L2 -796 2518 2243 294 214 20 51 chr13 42528724 42528822 -77216076 - MLT1J2 LTR MaLR -354 96 2 21 36 0 0 chr13 42529845 42529873 -77215025 + AT_rich Low_complexity Low_complexity 1 28 0 2270 106 0 0 chr13 42531296 42531597 -77213301 - AluY SINE Alu -10 301 1 234 324 52 0 chr13 42531804 42531940 -77212958 + L1P LINE L1 4910 5052 -1094 329 287 231 12 chr13 42532177 42532501 -77212397 + L1ME4a LINE L1 5260 5654 -467 22 70 0 0 chr13 42532620 42532663 -77212235 + AT_rich Low_complexity Low_complexity 1 43 0 305 261 39 46 chr13 42532704 42532857 -77212041 + L1ME4a LINE L1 5964 6115 -6 304 235 0 0 chr13 42534444 42534512 -77210386 + MER92C LTR ERV1 483 550 -4 200 214 0 0 chr13 42534903 42534945 -77209953 + MIR SINE MIR 99 140 -122 2340 103 0 0 chr13 42535039 42535341 -77209557 - AluSx SINE Alu -10 302 1 3551 155 11 16 chr13 42535357 42535994 -77208904 - L1MB7 LINE L1 0 6184 5551 22 56 0 0 chr13 42536389 42536425 -77208473 + AT_rich Low_complexity Low_complexity 1 36 0 243 389 24 8 chr13 42536438 42536564 -77208334 - L2 LINE L2 -219 3053 2926 356 338 29 38 chr13 42536619 42536859 -77208039 - L2 LINE L2 -815 2499 2262 1232 134 51 24 chr13 42539414 42539667 -77205231 - L1MA4 LINE L1 -15 6285 6026 318 203 159 11 chr13 42540078 42540210 -77204688 - L1MD3 LINE L1 -11 7984 6192 5353 169 39 26 chr13 42540211 42541370 -77203528 + Ricksha_a DNA DNA 35 1176 -10 1364 191 78 58 chr13 42541377 42541791 -77203107 - L1MD3 LINE L1 -140 7855 5808 1587 203 75 17 chr13 42542126 42542262 -77202636 + MLT1A1 LTR MaLR 1 128 -237 2382 99 0 6 chr13 42542262 42542576 -77202322 + AluSq SINE Alu 1 312 -1 1587 203 75 17 chr13 42542576 42542784 -77202114 + MLT1A1 LTR MaLR 128 365 0 25 0 0 0 chr13 42543443 42543468 -77201430 + AT_rich Low_complexity Low_complexity 1 25 0 380 274 27 41 chr13 42543767 42543913 -77200985 + L1MDa LINE L1 2440 2583 -3957 512 282 135 71 chr13 42543915 42544351 -77200547 + L1ME LINE L1 141 604 -5601 247 220 77 18 chr13 42544637 42544805 -77200093 + L1ME LINE L1 2086 2263 -4133 513 132 0 0 chr13 42544816 42544892 -77200006 + AluSg/x SINE Alu 218 293 -16 198 0 0 0 chr13 42544898 42544920 -77199978 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 266 50 25 0 chr13 42544919 42544959 -77199939 + (TA)n Simple_repeat Simple_repeat 1 41 0 1904 248 84 29 chr13 42544963 42545962 -77198936 + L1ME LINE L1 2233 3286 -2929 2252 252 62 44 chr13 42545966 42547054 -77197844 + L1ME LINE L1 3669 4783 -1432 2455 66 3 0 chr13 42547054 42547357 -77197541 + AluSc SINE Alu 5 308 -1 2252 252 62 44 chr13 42547357 42547492 -77197406 + L1ME LINE L1 4783 4914 -1301 4183 149 13 4 chr13 42547492 42548197 -77196701 + MER50 LTR ERV1 1 711 -23 499 237 89 21 chr13 42548206 42548529 -77196369 + L1ME LINE L1 4919 5284 -931 290 211 94 35 chr13 42548653 42548824 -77196074 + L1ME LINE L1 5325 5506 -727 422 279 87 38 chr13 42548839 42549022 -77195876 + L1M4 LINE L1 2732 2923 -3223 205 164 18 18 chr13 42549172 42549227 -77195671 + GA-rich Low_complexity Low_complexity 3 57 0 513 314 81 50 chr13 42549348 42549730 -77195168 + L1M4 LINE L1 3385 3778 -2368 461 261 35 4 chr13 42549879 42550109 -77194789 + L1M4 LINE L1 3816 4052 -2094 34983 31 3 28 chr13 42550517 42555968 -77188930 - L1PA4 LINE L1 -8 6147 835 646 110 0 0 chr13 42555966 42556066 -77188832 - L1PA4 LINE L1 -6043 103 4 * 5470 172 14 9 chr13 42556110 42558139 -77186759 + L1PA16 LINE L1 4125 6157 -9 1098 59 0 0 chr13 42558160 42558296 -77186602 + AluY SINE Alu 172 307 -4 414 0 0 0 chr13 42558889 42558935 -77185963 + (CA)n Simple_repeat Simple_repeat 2 47 0 2009 161 34 27 chr13 42560111 42560954 -77183944 + MER45B DNA AcHobo 1 940 -641 2759 26 0 0 chr13 42560954 42561264 -77183634 - AluYa5 SINE Alu -1 310 1 2009 161 34 27 chr13 42561264 42561363 -77183535 + MER45B DNA AcHobo 940 1037 -3 226 374 35 17 chr13 42561365 42561480 -77183418 + L2 LINE L2 3188 3304 -9 337 315 47 16 chr13 42561512 42561639 -77183259 + L3 LINE CR1 1006 1136 -441 266 339 36 18 chr13 42561641 42561753 -77183145 + MIR SINE MIR 48 161 -101 200 316 151 19 chr13 42561891 42562097 -77182801 + L3 LINE CR1 1219 1451 -126 328 271 77 71 chr13 42562188 42562358 -77182540 - MIR SINE MIR -14 248 78 222 37 0 0 chr13 42563359 42563386 -77181512 + (CA)n Simple_repeat Simple_repeat 2 28 0 1928 149 0 7 chr13 42565271 42565566 -77179332 + AluJb SINE Alu 2 294 -18 2098 107 4 4 chr13 42566111 42566392 -77178506 + AluSx SINE Alu 28 308 -4 189 265 258 13 chr13 42566417 42566568 -77178330 - MER5A DNA MER1_type -1 188 1 523 266 89 128 chr13 42566631 42566876 -77178022 + L2 LINE L2 2536 2789 -524 678 85 0 0 chr13 42566876 42566970 -77177928 + L1MB5 LINE L1 6075 6168 -6 523 266 89 128 chr13 42566970 42567476 -77177422 + L2 LINE L2 2789 3275 -38 2175 124 7 0 chr13 42568459 42568765 -77176133 - AluSq SINE Alu -5 308 1 1540 187 34 24 chr13 42568765 42569059 -77175839 - AluJo SINE Alu -15 297 1 512 220 63 13 chr13 42570146 42570305 -77174593 - LTR33A LTR ERVL -13 510 344 901 139 63 67 chr13 42571002 42571158 -77173740 + L1MD2 LINE L1 6137 6293 -66 2005 92 4 26 chr13 42571158 42571431 -77173467 - AluSx SINE Alu -10 302 36 901 139 63 67 chr13 42571431 42571497 -77173401 + L1MD2 LINE L1 6293 6358 -1 180 0 0 0 chr13 42572446 42572466 -77172432 + (CAGGG)n Simple_repeat Simple_repeat 3 22 0 246 328 82 8 chr13 42572586 42572720 -77172178 + L2 LINE L2 2560 2703 -611 189 0 0 0 chr13 42572801 42572822 -77172076 + (A)n Simple_repeat Simple_repeat 1 21 0 457 224 105 28 chr13 42572848 42572991 -77171907 - LTR16C LTR ERVL -21 470 317 281 285 41 49 chr13 42573180 42573303 -77171595 + MER5B DNA MER1_type 57 178 0 240 319 18 62 chr13 42573455 42573492 -77171406 + L2 LINE L2 3163 3200 -72 2519 61 0 16 chr13 42573492 42573802 -77171096 + AluY SINE Alu 1 305 -6 240 319 18 62 chr13 42573802 42573877 -77171021 + L2 LINE L2 3200 3270 -2 198 205 0 0 chr13 42573995 42574034 -77170864 - L2 LINE L2 -12 3301 3263 256 246 0 43 chr13 42574892 42574961 -77169937 - L2 LINE L2 0 3272 3207 2014 106 10 3 chr13 42575137 42575429 -77169469 - AluSp SINE Alu -19 294 1 189 295 77 13 chr13 42577105 42577183 -77167715 + MIR3 SINE MIR 77 159 -49 2291 123 0 7 chr13 42580219 42580529 -77164369 - AluSx SINE Alu -4 308 1 324 0 0 0 chr13 42580731 42580767 -77164131 + (TG)n Simple_repeat Simple_repeat 1 36 0 1978 123 0 0 chr13 42580772 42581040 -77163858 - AluSx SINE Alu -30 282 15 222 283 0 0 chr13 42582089 42582142 -77162756 + CT-rich Low_complexity Low_complexity 3 55 0 369 214 69 23 chr13 42582636 42582767 -77162131 + MER103 DNA DNA 21 157 -9 432 311 8 8 chr13 42583042 42583161 -77161737 - MIR3 SINE MIR -36 172 54 356 85 0 0 chr13 42583866 42583913 -77160985 - U6 snRNA snRNA -60 47 1 201 263 18 0 chr13 42584120 42584177 -77160721 + L2 LINE L2 2182 2239 -1075 386 323 117 40 chr13 42584451 42585103 -77159795 + L2 LINE L2 2544 3271 -1 22 0 0 0 chr13 42587202 42587224 -77157674 + AT_rich Low_complexity Low_complexity 1 22 0 800 194 18 0 chr13 42588789 42588959 -77155939 + MLT1B LTR MaLR 1 173 -217 526 158 0 83 chr13 42588961 42589081 -77155817 + FRAM SINE Alu 66 175 -1 666 243 115 12 chr13 42589084 42589275 -77155623 + MLT1B LTR MaLR 200 423 -44 377 20 0 20 chr13 42589275 42589326 -77155572 + (TTG)n Simple_repeat Simple_repeat 1 50 0 666 243 115 12 chr13 42589326 42589377 -77155521 + MLT1B LTR MaLR 423 467 0 815 188 18 0 chr13 42590275 42590445 -77154453 + MLT1B LTR MaLR 1 173 -217 526 158 0 83 chr13 42590447 42590567 -77154331 + FRAM SINE Alu 66 175 -1 671 234 138 17 chr13 42590570 42590760 -77154138 + MLT1B LTR MaLR 200 426 -41 437 0 0 19 chr13 42590760 42590814 -77154084 + (TTG)n Simple_repeat Simple_repeat 2 54 0 671 234 138 17 chr13 42590814 42590862 -77154036 + MLT1B LTR MaLR 426 467 0 181 262 95 36 chr13 42591421 42591505 -77153393 - MIR3 SINE MIR -5 203 115 2191 112 0 3 chr13 42592007 42592301 -77152597 + AluSx SINE Alu 1 293 -19 376 221 115 29 chr13 42595701 42595805 -77149093 - L2 LINE L2 -2 3311 3199 1870 141 0 7 chr13 42595840 42596123 -77148775 + AluJb SINE Alu 5 285 -27 47 19 0 0 chr13 42596123 42596177 -77148721 + AT_rich Low_complexity Low_complexity 1 54 0 1406 109 12 51 chr13 42596332 42596588 -77148310 + Tigger2a DNA MER2_type 1 246 -188 519 209 0 0 chr13 42596585 42596676 -77148222 + Tigger2a DNA MER2_type 354 444 0 * 734 276 132 0 chr13 42596681 42596924 -77147974 - L2 LINE L2 -338 2976 2702 483 202 57 8 chr13 42596924 42597048 -77147850 - L1MB8 LINE L1 0 6178 6049 1838 225 56 56 chr13 42597051 42597285 -77147613 - L1PA13 LINE L1 -2 6161 5928 2803 174 65 12 chr13 42597285 42597654 -77147244 - L1MB8 LINE L1 -250 5934 5586 2391 91 0 0 chr13 42597654 42597950 -77146948 - AluSg SINE Alu -11 299 4 2803 174 65 12 chr13 42597950 42598605 -77146293 - L1MB8 LINE L1 -598 5586 4858 1056 253 41 15 chr13 42598605 42598708 -77146190 - L2 LINE L2 -599 2715 2616 2240 156 55 103 chr13 42598708 42599254 -77145644 - MLT2B1 LTR ERVL 0 520 1 1056 253 41 15 chr13 42599254 42599419 -77145479 - L2 LINE L2 -698 2616 2440 1956 174 67 5 chr13 42600316 42600689 -77144209 - MSTD LTR MaLR 0 396 1 345 229 259 0 chr13 42601864 42601995 -77142903 + L1ME4a LINE L1 5831 5995 -126 431 274 18 58 chr13 42602117 42602233 -77142665 + L1MC4 LINE L1 5694 5798 -2010 2342 127 42 3 chr13 42602233 42602594 -77142304 + THE1C LTR MaLR 1 375 0 431 274 18 58 chr13 42602594 42602703 -77142195 + L1MC4 LINE L1 5798 5910 -1898 21 0 0 0 chr13 42602816 42602837 -77142061 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 42602913 42602934 -77141964 + AT_rich Low_complexity Low_complexity 1 21 0 291 137 20 0 chr13 42603783 42603838 -77141060 + L2 LINE L2 3217 3313 0 1885 216 45 2 chr13 42604391 42604863 -77140035 + Charlie4a DNA MER1_type 17 508 0 485 288 56 68 chr13 42605080 42605330 -77139568 + MIR SINE MIR 1 247 -15 952 260 41 4 chr13 42605436 42605682 -77139216 + MIR SINE MIR 8 262 0 275 366 101 26 chr13 42607479 42607747 -77137151 + L2 LINE L2 2684 2971 -343 3494 229 34 19 chr13 42607939 42609427 -77135471 - L1ME1 LINE L1 -5 6161 4644 2368 106 0 0 chr13 42609427 42609730 -77135168 - AluSx SINE Alu -9 303 1 3494 229 34 19 chr13 42609730 42610095 -77134803 - L1ME1 LINE L1 -1522 4644 4286 186 133 0 0 chr13 42610567 42610597 -77134301 + (TA)n Simple_repeat Simple_repeat 1 30 0 329 242 0 44 chr13 42610598 42610689 -77134209 + L1MC4 LINE L1 6614 6700 -1342 * 336 261 0 22 chr13 42610628 42610720 -77134178 - L1MC4 LINE L1 -1339 6703 6614 302 307 11 0 chr13 42610697 42610785 -77134113 + L1MC4 LINE L1 6615 6703 -1339 * 307 258 0 0 chr13 42610821 42610910 -77133988 + L1MC4 LINE L1 6616 6704 -1338 27 0 0 0 chr13 42610910 42610937 -77133961 + AT_rich Low_complexity Low_complexity 1 27 0 1459 124 0 0 chr13 42610937 42611131 -77133767 - AluSg/x SINE Alu -46 264 71 1586 163 50 0 chr13 42611161 42611419 -77133479 - AluJo SINE Alu -18 294 24 332 286 57 21 chr13 42612124 42612264 -77132634 - L1ME4a LINE L1 -12 6109 5965 1664 166 3 21 chr13 42612716 42613005 -77131893 + AluJb SINE Alu 1 284 -28 535 149 0 18 chr13 42613005 42613119 -77131779 + (GGGGA)n Simple_repeat Simple_repeat 1 112 0 203 265 181 12 chr13 42613169 42613252 -77131646 + L2 LINE L2 3125 3221 -51 433 127 42 127 chr13 42613446 42613564 -77131334 + FLAM_A SINE Alu 35 142 0 1211 231 75 14 chr13 42613739 42614099 -77130799 + MLT1H LTR MaLR 1 382 -167 2853 171 97 62 chr13 42614153 42614523 -77130375 + L1MD1 LINE L1 5410 5766 -476 2229 118 3 3 chr13 42614523 42614829 -77130069 + AluSx SINE Alu 1 306 -6 2853 171 97 62 chr13 42614829 42615261 -77129637 + L1MD1 LINE L1 5766 6240 -2 381 269 156 18 chr13 42615261 42615428 -77129470 + MIR SINE MIR 73 262 0 2121 115 7 7 chr13 42615664 42615969 -77128929 - AluSx SINE Alu -7 305 1 218 336 133 28 chr13 42616019 42616162 -77128736 - L3 LINE CR1 -3 1574 1417 499 274 0 9 chr13 42616419 42616525 -77128373 - L2 LINE L2 0 3272 3168 263 237 79 13 chr13 42617595 42617671 -77127227 - MIR SINE MIR -98 164 84 184 345 142 26 chr13 42619621 42619734 -77125164 - MIR3 SINE MIR -25 183 58 1311 191 9 10 chr13 42619740 42620063 -77124835 - MLT1A1 LTR MaLR -10 355 1 221 289 67 115 chr13 42621221 42621429 -77123469 - L3b LINE CR1 -93 1490 1293 202 323 75 21 chr13 42622504 42622597 -77122301 + MIR SINE MIR 19 116 -92 208 344 89 89 chr13 42622698 42622968 -77121930 + L2 LINE L2 3003 3272 0 1605 185 25 4 chr13 42625596 42625715 -77119183 + AluJo SINE Alu 1 116 -196 201 39 0 0 chr13 42625715 42625741 -77119157 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 1605 185 25 4 chr13 42625741 42625897 -77119001 + AluJo SINE Alu 116 282 -30 213 253 80 27 chr13 42626342 42626417 -77118481 + MIR SINE MIR 52 130 -132 299 294 63 21 chr13 42627241 42627384 -77117514 + L1ME4a LINE L1 5607 5755 -2053 399 237 160 65 chr13 42627800 42627963 -77116935 + L1ME4a LINE L1 5788 5987 -134 333 0 0 0 chr13 42627963 42628000 -77116898 + (CA)n Simple_repeat Simple_repeat 2 38 0 399 237 160 65 chr13 42628000 42628098 -77116800 + L1ME4a LINE L1 5987 6074 -47 2064 59 3 69 chr13 42629045 42629335 -77115563 - AluY SINE Alu -16 295 25 7447 85 9 1 chr13 42629564 42630693 -77114205 - L1P LINE L1 -2758 3388 2251 337 279 50 37 chr13 42630805 42630966 -77113932 - L1MC4a LINE L1 -1945 5863 5701 201 383 0 82 chr13 42631562 42631745 -77113153 + L2 LINE L2 296 463 -2851 218 401 14 24 chr13 42631817 42632024 -77112874 + L2 LINE L2 542 746 -2568 1435 188 47 0 chr13 42632287 42632721 -77112177 + L1MC/D LINE L1 5132 5588 -743 280 245 52 12 chr13 42632907 42633104 -77111794 + L1ME LINE L1 784 994 -5076 830 192 145 30 chr13 42633168 42633402 -77111496 + MSTA LTR MaLR 1 261 -167 22 0 0 0 chr13 42633708 42633730 -77111168 + GC_rich Low_complexity Low_complexity 1 22 0 245 279 0 0 chr13 42633950 42634011 -77110887 + (CG)n Simple_repeat Simple_repeat 2 62 0 317 287 99 61 chr13 42634248 42634429 -77110469 + L1M2 LINE L1 768 955 -5894 279 266 85 32 chr13 42635019 42635113 -77109785 + L2 LINE L2 3172 3270 -2 1619 114 24 108 chr13 42635471 42635805 -77109093 - AluYb8 SINE Alu -12 306 1 2153 204 91 12 chr13 42636413 42636982 -77107916 + LTR48B LTR ERV1 1 614 -30 432 0 0 0 chr13 42637595 42637643 -77107255 + (A)n Simple_repeat Simple_repeat 1 48 0 191 345 9 43 chr13 42638475 42638591 -77106307 - L2 LINE L2 -12 3301 3190 403 297 60 22 chr13 42639389 42639574 -77105324 + MIR SINE MIR 7 198 -64 2096 130 3 3 chr13 42640155 42640456 -77104442 + AluSq SINE Alu 1 301 -12 2310 86 7 7 chr13 42640567 42640869 -77104029 + AluSx SINE Alu 1 302 -10 2827 10 0 0 chr13 42641012 42641322 -77103576 - AluYb8 SINE Alu -8 310 1 378 235 168 13 chr13 42642939 42643088 -77101810 + MIR SINE MIR 40 211 -51 2274 92 0 0 chr13 42643608 42643933 -77100965 - AluSx SINE Alu 0 325 1 380 292 50 8 chr13 42644166 42644286 -77100612 + L3b LINE CR1 1335 1459 -124 204 40 0 0 chr13 42644623 42644648 -77100250 + (GA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 42645616 42645637 -77099261 + AT_rich Low_complexity Low_complexity 1 21 0 239 235 0 44 chr13 42645828 42645896 -77099002 + CT-rich Low_complexity Low_complexity 2 66 0 201 229 25 147 chr13 42646227 42646384 -77098514 - MIR SINE MIR -33 229 92 3432 132 105 8 chr13 42646433 42647060 -77097838 - L1MA4A LINE L1 -7 6296 5609 249 348 22 0 chr13 42647128 42647220 -77097678 + L2 LINE L2 3171 3264 -8 198 0 0 0 chr13 42647222 42647244 -77097654 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1681 159 4 0 chr13 42648631 42648883 -77096015 + AluSx SINE Alu 38 290 -22 21 36 0 0 chr13 42648883 42648911 -77095987 + AT_rich Low_complexity Low_complexity 1 28 0 456 287 7 22 chr13 42649321 42649457 -77095441 - MIR SINE MIR -109 153 20 1381 173 103 11 chr13 42650654 42650925 -77093973 + AluJb SINE Alu 5 300 -12 504 291 107 22 chr13 42650939 42651168 -77093730 - MIR SINE MIR -12 250 2 336 328 0 8 chr13 42652330 42652449 -77092449 + MER5A DNA MER1_type 16 133 -56 1205 79 0 6 chr13 42652463 42652628 -77092270 - L1PA8 LINE L1 -1 6171 6008 341 70 123 0 chr13 42652731 42652788 -77092110 - L1PA8 LINE L1 -169 6003 5940 239 288 14 0 chr13 42652957 42653030 -77091868 - MER5B DNA MER1_type -19 159 86 2860 3 0 3 chr13 42653272 42653607 -77091291 - AluYa5 SINE Alu 0 334 1 2065 112 0 34 chr13 42653785 42654106 -77090792 - AluSx SINE Alu 0 311 1 279 260 170 20 chr13 42654683 42654783 -77090115 + L2 LINE L2 3146 3260 -12 360 319 85 21 chr13 42655190 42655331 -77089567 - MER5B DNA MER1_type -23 155 6 2687 33 0 0 chr13 42657021 42657327 -77087571 - AluY SINE Alu -5 306 1 2102 116 0 0 chr13 42657646 42657954 -77086944 - AluSx SINE Alu 0 308 1 21 0 0 0 chr13 42659607 42659628 -77085270 + AT_rich Low_complexity Low_complexity 1 21 0 245 297 16 0 chr13 42659643 42659707 -77085191 + L2 LINE L2 3133 3197 -75 21 0 0 0 chr13 42660153 42660174 -77084724 + AT_rich Low_complexity Low_complexity 1 21 0 206 214 24 0 chr13 42660961 42661003 -77083895 + L2 LINE L2 3255 3297 -16 242 217 14 0 chr13 42661226 42661295 -77083603 + GA-rich Low_complexity Low_complexity 3 72 0 2115 121 0 0 chr13 42662878 42663192 -77081706 + AluSx SINE Alu 1 314 0 21 0 0 0 chr13 42663203 42663224 -77081674 + AT_rich Low_complexity Low_complexity 1 21 0 371 288 79 58 chr13 42663314 42663453 -77081445 + MIR SINE MIR 20 161 -101 * 633 300 70 0 chr13 42663442 42663642 -77081256 - MIR SINE MIR 0 262 49 308 283 43 11 chr13 42663985 42664172 -77080726 + L1MC4a LINE L1 5039 5231 -915 1412 236 27 50 chr13 42664199 42664431 -77080467 + L1 LINE L1 4776 4995 -1151 2259 110 0 0 chr13 42664431 42664722 -77080176 + AluSx SINE Alu 1 291 -21 1412 236 27 50 chr13 42664722 42664930 -77079968 + L1 LINE L1 4995 5206 -940 3833 40 0 0 chr13 42664930 42665409 -77079489 - L1P LINE L1 -4424 1722 1244 416 73 0 0 chr13 42665414 42665469 -77079429 - L1P LINE L1 -5983 163 109 5404 39 5 1 chr13 42665469 42666129 -77078769 + L1PA4 LINE L1 5491 6152 -3 1564 273 57 29 chr13 42666136 42666822 -77078076 + L1MC4a LINE L1 5348 6052 -1756 1329 266 17 62 chr13 42667268 42667859 -77077039 + L1MC5 LINE L1 6575 7142 -819 215 179 71 18 chr13 42667859 42667915 -77076983 + MIR SINE MIR 121 179 -83 15164 155 45 19 chr13 42668164 42668319 -77076579 - L1M1 LINE L1 -4833 2732 2583 2068 146 0 0 chr13 42668319 42668614 -77076284 - AluSq SINE Alu -18 295 1 15164 155 45 19 chr13 42668614 42671107 -77073791 - L1M1 LINE L1 -4982 2583 15 540 336 37 8 chr13 42671204 42671448 -77073450 + L3 LINE CR1 931 1181 -396 4885 136 28 4 chr13 42671456 42672510 -77072388 + L1PA16 LINE L1 4950 6028 -138 1057 157 60 23 chr13 42672512 42672578 -77072320 + L1PA16 LINE L1 5929 5991 -175 2271 119 0 0 chr13 42672578 42672880 -77072018 + AluSx SINE Alu 1 302 -10 1057 157 60 23 chr13 42672880 42673029 -77071869 + L1PA16 LINE L1 5991 6152 -14 1152 192 12 41 chr13 42674631 42674876 -77070022 - MER8 DNA MER2_type 0 239 2 254 296 59 53 chr13 42674930 42675082 -77069816 - L2 LINE L2 -228 3044 2892 293 271 47 12 chr13 42675349 42675434 -77069464 - L2 LINE L2 0 3272 3185 342 0 0 0 chr13 42675646 42675684 -77069214 + (CA)n Simple_repeat Simple_repeat 2 39 0 2283 114 0 0 chr13 42676384 42676690 -77068208 - AluSx SINE Alu -6 306 1 2260 100 0 0 chr13 42676970 42677260 -77067638 - AluSx SINE Alu -22 290 1 515 267 53 13 chr13 42677453 42677603 -77067295 - LTR16A1 LTR ERVL -3 454 299 24 32 0 0 chr13 42679347 42679378 -77065520 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr13 42679752 42679783 -77065115 + AT_rich Low_complexity Low_complexity 1 31 0 575 287 63 36 chr13 42679826 42680049 -77064849 + MIR SINE MIR 34 262 0 7452 29 8 0 chr13 42681188 42682547 -77062351 + L1PA4 LINE L1 4786 6151 -4 2818 13 0 0 chr13 42683646 42683955 -77060943 + AluYb8 SINE Alu 1 309 -9 614 276 66 17 chr13 42684662 42684843 -77060055 - MIR SINE MIR -14 248 59 775 236 158 42 chr13 42684904 42685264 -77059634 + MER57B LTR ERV1 10 411 -23 228 103 0 0 chr13 42685296 42685335 -77059563 + MER57A LTR ERV1 365 403 0 561 139 20 0 chr13 42685557 42685658 -77059240 - L1MB7 LINE L1 0 6184 6082 617 243 94 58 chr13 42685670 42686007 -77058891 - LTR35 LTR ERV1 -1 676 350 265 276 22 104 chr13 42686121 42686255 -77058643 - LTR35 LTR ERV1 -495 123 1 3226 163 34 42 chr13 42686260 42686872 -77058026 - L1MB8 LINE L1 -103 6075 5467 2907 107 16 5 chr13 42686872 42687301 -77057597 - MER57B LTR ERV1 0 434 1 3226 163 34 42 chr13 42687301 42687338 -77057560 - L1MB8 LINE L1 -711 5467 5431 274 100 0 0 chr13 42687414 42687454 -77057444 - L1ME LINE L1 -362 6044 6005 5445 37 1 8 chr13 42687457 42688125 -77056773 - L1PA4 LINE L1 -1 6154 5491 408 74 0 0 chr13 42688125 42688179 -77056719 + L1P LINE L1 109 162 -5984 8601 232 59 46 chr13 42688180 42688813 -77056085 - L1MEc LINE L1 -382 6018 5395 1703 166 15 0 chr13 42688813 42689084 -77055814 - AluJo SINE Alu -37 275 1 8601 232 59 46 chr13 42689084 42692322 -77052576 - L1MEc LINE L1 -1005 5395 2138 319 211 25 121 chr13 42692434 42692506 -77052392 - L1MEc LINE L1 -4586 1923 1846 1732 171 7 4 chr13 42692506 42692813 -77052085 + AluSx SINE Alu 1 308 0 319 211 25 121 chr13 42692813 42692877 -77052021 - L1MEc LINE L1 -4663 1846 1673 1851 85 4 0 chr13 42693145 42693381 -77051517 - AluSq SINE Alu -7 306 70 2348 95 3 0 chr13 42693662 42693967 -77050931 - AluSq SINE Alu -7 306 1 225 178 44 0 chr13 42694026 42694071 -77050827 - L1MEc LINE L1 -5475 897 851 433 330 153 11 chr13 42694568 42694850 -77050048 + L1MC4a LINE L1 5612 5933 -237 276 292 12 47 chr13 42695056 42695150 -77049748 + MIR SINE MIR 34 125 -83 1938 171 0 0 chr13 42695367 42695666 -77049232 - AluJb SINE Alu -11 301 3 4020 222 67 74 chr13 42696946 42698879 -77046019 + L1MDa LINE L1 23 2097 -4443 328 258 42 8 chr13 42698898 42699018 -77045880 + L1MB8 LINE L1 6015 6138 -40 * 17104 182 17 11 chr13 42699016 42702956 -77041942 + L1PA13 LINE L1 1079 5065 -1732 279 0 0 0 chr13 42702956 42702987 -77041911 + (CA)n Simple_repeat Simple_repeat 1 31 0 17104 182 17 11 chr13 42702987 42703185 -77041713 + L1PA13 LINE L1 5065 5260 -1537 4722 84 58 36 chr13 42703184 42703937 -77040961 + L1PA13 LINE L1 6037 6806 -8 * 2526 75 0 0 chr13 42703941 42704248 -77040650 + AluY SINE Alu 1 307 -4 292 125 0 0 chr13 42704301 42704349 -77040549 + L1MB8 LINE L1 6125 6172 -6 488 259 89 35 chr13 42704350 42704555 -77040343 + L1ME3 LINE L1 5961 6334 0 341 310 143 16 chr13 42704569 42704814 -77040084 - L1ME LINE L1 -587 5579 5304 294 95 0 0 chr13 42705042 42705084 -77039814 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 43 0 21 chr13 42705188 42705213 -77039685 + AT_rich Low_complexity Low_complexity 1 26 -20 2294 104 0 0 chr13 42705213 42705511 -77039387 + AluSx SINE Alu 1 298 -14 22 43 0 21 chr13 42705511 42705532 -77039366 + AT_rich Low_complexity Low_complexity 26 46 0 22 35 0 0 chr13 42707934 42707963 -77036935 + AT_rich Low_complexity Low_complexity 1 29 0 220 344 15 53 chr13 42708007 42708138 -77036760 + MIR SINE MIR 20 145 -63 307 375 148 8 chr13 42708149 42708405 -77036493 + L2 LINE L2 1947 2238 -1076 379 264 95 125 chr13 42708639 42709007 -77035891 - MLT1H LTR MaLR -170 379 23 1183 332 109 20 chr13 42709328 42710286 -77034612 + L2 LINE L2 2286 3313 0 309 275 12 0 chr13 42710513 42710593 -77034305 + CT-rich Low_complexity Low_complexity 3 83 0 1020 232 102 34 chr13 42710599 42711268 -77033630 - L1MB7 LINE L1 0 6184 5454 306 50 0 0 chr13 42711268 42711308 -77033590 + (TG)n Simple_repeat Simple_repeat 1 40 0 1477 208 110 25 chr13 42711414 42711852 -77033046 - L1ME LINE L1 -948 5198 4724 2190 209 88 81 chr13 42711853 42711920 -77032978 + MER21B LTR ERV1 1 66 -797 2435 145 33 9 chr13 42711920 42712340 -77032558 - MSTB1 LTR MaLR 0 432 3 2190 209 88 81 chr13 42712340 42712964 -77031934 + MER21B LTR ERV1 66 697 -166 1550 106 65 12 chr13 42712964 42713210 -77031688 - Tigger7 DNA MER2_type 0 2487 2229 1064 97 28 0 chr13 42713210 42713355 -77031543 - AluSq/x SINE Alu -164 149 1 3123 184 12 0 chr13 42713357 42713868 -77031030 - Tigger7 DNA MER2_type -216 517 1 242 310 35 11 chr13 42713868 42713955 -77030943 + MER21B LTR ERV1 696 784 -79 3082 246 22 1 chr13 42713955 42714761 -77030137 - L1ME LINE L1 -1419 4727 3905 21 0 0 0 chr13 42714771 42714792 -77030106 + AT_rich Low_complexity Low_complexity 1 21 0 220 262 254 32 chr13 42715151 42715277 -77029621 + L2 LINE L2 3138 3291 -22 494 322 121 0 chr13 42715561 42715735 -77029163 - MIR SINE MIR -65 197 3 21 0 0 0 chr13 42716420 42716441 -77028457 + AT_rich Low_complexity Low_complexity 1 21 0 483 305 155 13 chr13 42717152 42717378 -77027520 + MIR SINE MIR 5 262 0 251 341 0 0 chr13 42717394 42717479 -77027419 + MER117 DNA MER1_type 64 148 -49 190 208 42 0 chr13 42717863 42717911 -77026987 + L2 LINE L2 3004 3053 -219 711 266 100 22 chr13 42718202 42718431 -77026467 - MIR SINE MIR -15 247 1 1053 212 4 37 chr13 42718504 42718749 -77026149 + MER8 DNA MER2_type 2 238 -1 3658 284 202 25 chr13 42718995 42721068 -77023830 + L2 LINE L2 22 2461 -853 364 304 27 9 chr13 42721241 42721353 -77023545 + L2 LINE L2 2471 2584 -730 284 259 326 0 chr13 42721337 42721484 -77023414 + L2 LINE L2 3022 3216 -97 * 769 304 40 8 chr13 42721713 42721963 -77022935 + MIR SINE MIR 5 262 0 212 339 65 0 chr13 42721986 42722048 -77022850 + L2 LINE L2 3143 3208 -64 583 211 45 64 chr13 42722914 42723070 -77021828 + MLT1D LTR MaLR 1 153 -352 2063 188 183 2 chr13 42723071 42723540 -77021358 + MER89 LTR ERV1 6 559 0 520 238 131 60 chr13 42723546 42723828 -77021070 + MLT1D LTR MaLR 164 465 -2 2209 81 18 0 chr13 42724429 42724712 -77020186 + AluSx SINE Alu 9 296 -16 320 187 0 0 chr13 42724990 42725065 -77019833 - L1MB7 LINE L1 0 6184 6110 352 242 88 144 chr13 42725357 42725551 -77019347 - MER5B DNA MER1_type -6 183 1 473 84 127 0 chr13 42725808 42725879 -77019019 + MADE1 DNA Mariner 1 80 0 343 314 151 57 chr13 42726760 42727218 -77017680 + L1M2 LINE L1 765 1265 -5584 577 118 42 0 chr13 42727321 42727440 -77017458 + (CGAGG)n Simple_repeat Simple_repeat 4 127 0 213 167 0 0 chr13 42730157 42730193 -77014705 + (TA)n Simple_repeat Simple_repeat 2 38 0 3408 165 27 2 chr13 42730193 42730782 -77014116 - MER6A DNA MER2_type -1 604 1 380 258 88 61 chr13 42731789 42731913 -77012985 - MER20B DNA MER1_type 0 219 67 180 77 0 0 chr13 42731913 42731939 -77012959 + (CCAA)n Simple_repeat Simple_repeat 3 28 0 380 258 88 61 chr13 42731939 42732004 -77012894 - MER20B DNA MER1_type -152 67 5 5583 131 19 6 chr13 42732604 42734363 -77010535 + L1PA15 LINE L1 4400 6165 0 22 35 0 0 chr13 42734363 42734392 -77010506 + AT_rich Low_complexity Low_complexity 1 29 0 236 323 106 43 chr13 42734592 42734827 -77010071 + L2 LINE L2 2250 2499 -815 453 150 0 0 chr13 42735231 42735311 -77009587 + L1MB2 LINE L1 4456 4535 -1611 3942 161 24 20 chr13 42735311 42736061 -77008837 + L1MB2 LINE L1 5411 6163 -8 282 237 26 13 chr13 42737879 42737955 -77006943 + CT-rich Low_complexity Low_complexity 2 78 0 681 242 26 84 chr13 42738394 42738571 -77006327 - MER58A DNA MER1_type -2206 214 51 618 188 31 8 chr13 42738571 42738699 -77006199 + FLAM_A SINE Alu 1 131 -2 681 242 26 84 chr13 42738699 42738748 -77006150 - MER58A DNA MER1_type -2369 51 1 447 364 145 27 chr13 42739314 42740330 -77004568 - L2 LINE L2 0 3272 2143 318 342 92 11 chr13 42740790 42740974 -77003924 - MIR SINE MIR -31 231 33 1363 138 21 0 chr13 42741747 42741986 -77002912 - L1MA5A LINE L1 0 6297 6054 2252 49 3 11 chr13 42744117 42744440 -77000458 - AluY SINE Alu 0 321 1 624 324 180 9 chr13 42744544 42745093 -76999805 + L2 LINE L2 2272 2914 -400 415 182 0 20 chr13 42745310 42745409 -76999489 + (TA)n Simple_repeat Simple_repeat 2 98 0 247 330 70 10 chr13 42745898 42745998 -76998900 + L2 LINE L2 3159 3264 -49 1764 108 148 75 chr13 42746055 42746096 -76998802 - MSTA LTR MaLR 0 428 391 2322 90 0 3 chr13 42746096 42746395 -76998503 + AluSc SINE Alu 1 298 -11 1764 108 148 75 chr13 42746395 42746752 -76998146 - MSTA LTR MaLR -37 391 1 4723 114 38 23 chr13 42747033 42747829 -76997069 + L1MA5 LINE L1 5491 6298 -2 748 232 48 0 chr13 42748177 42748345 -76996553 + MER5B DNA MER1_type 2 177 -1 26 0 0 0 chr13 42748383 42748409 -76996489 + AT_rich Low_complexity Low_complexity 1 26 0 2000 130 7 0 chr13 42748417 42748709 -76996189 + AluSx SINE Alu 1 294 -18 2148 102 14 0 chr13 42749494 42749787 -76995111 + AluSx SINE Alu 1 297 -15 193 29 29 29 chr13 42749857 42749892 -76995006 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 45 0 0 0 chr13 42750018 42750063 -76994835 + AT_rich Low_complexity Low_complexity 1 45 0 2045 98 0 3 chr13 42750063 42750348 -76994550 - AluY SINE Alu -27 284 1 791 291 100 28 chr13 42750533 42751135 -76993763 + L1MC5 LINE L1 7260 7904 -57 21 0 0 0 chr13 42751147 42751168 -76993730 + AT_rich Low_complexity Low_complexity 1 21 0 1187 251 75 12 chr13 42751536 42752278 -76992620 - L1M4 LINE L1 -2887 3259 2448 980 236 8 37 chr13 42753205 42753446 -76991452 - MER8 DNA MER2_type -4 235 2 261 366 144 16 chr13 42755544 42755801 -76989097 - L2 LINE L2 -1078 2236 1947 218 322 7 59 chr13 42755775 42755943 -76988955 - MIR SINE MIR -63 145 20 * 22 35 0 0 chr13 42755988 42756017 -76988881 + AT_rich Low_complexity Low_complexity 1 29 0 2251 114 0 0 chr13 42757386 42757685 -76987213 - AluSx SINE Alu -13 299 1 2003 126 0 0 chr13 42757965 42758250 -76986648 - AluSx SINE Alu -22 290 6 2729 165 34 38 chr13 42758350 42758907 -76985991 + L1MB8 LINE L1 5521 6075 -103 244 284 22 104 chr13 42758912 42759046 -76985852 + LTR35 LTR ERV1 1 123 -495 427 274 73 81 chr13 42759160 42759497 -76985401 + LTR35 LTR ERV1 350 617 -1 474 136 34 11 chr13 42759509 42759597 -76985301 + L1MB8 LINE L1 6080 6169 -9 2527 188 38 13 chr13 42759715 42760246 -76984652 + L1MC3 LINE L1 7221 7764 -21 823 311 55 60 chr13 42761205 42761842 -76983056 - HAL1 LINE L1 -1871 636 3 651 248 7 0 chr13 42762099 42762244 -76982654 + FRAM SINE Alu 1 145 -31 4361 250 8 10 chr13 42762380 42763550 -76981348 + L1P LINE L1 1264 2430 -3716 286 67 22 22 chr13 42765367 42765412 -76979486 - L1PA7 LINE L1 -617 5537 5493 4147 79 3 18 chr13 42765412 42766009 -76978889 + L1PA7 LINE L1 5567 6154 0 1840 126 0 27 chr13 42766304 42766597 -76978301 + AluY SINE Alu 16 300 -11 2516 64 0 0 chr13 42767016 42767327 -76977571 - AluY SINE Alu 0 311 1 1017 283 82 20 chr13 42767491 42768138 -76976760 + L1MC5 LINE L1 7260 7925 -36 1105 170 5 16 chr13 42768319 42768513 -76976385 + AluJo SINE Alu 87 278 -34 312 331 134 52 chr13 42768839 42769087 -76975811 + L3 LINE CR1 1095 1372 -205 1520 225 85 40 chr13 42769087 42769532 -76975366 + LTR40c LTR ERVL 1 465 0 312 331 134 52 chr13 42769532 42769573 -76975325 + L3 LINE CR1 1372 1408 -169 412 193 145 0 chr13 42769948 42770031 -76974867 - L1MC3 LINE L1 -477 7308 7214 4530 174 61 13 chr13 42771391 42772324 -76972574 - L1MC3 LINE L1 -21 7764 6787 31 44 0 0 chr13 42772946 42772991 -76971907 + AT_rich Low_complexity Low_complexity 1 45 0 381 335 101 33 chr13 42774158 42774614 -76970284 - L2 LINE L2 -457 2857 2371 231 36 0 0 chr13 42774614 42774642 -76970256 + (TGG)n Simple_repeat Simple_repeat 2 29 0 2095 41 8 19 chr13 42775361 42775628 -76969270 - AluY SINE Alu -8 303 40 219 238 36 36 chr13 42776622 42776706 -76968192 - MIR3 SINE MIR 0 208 125 855 196 63 74 chr13 42777455 42777726 -76967172 - L2 LINE L2 -4 3309 3042 * 1229 278 97 43 chr13 42777716 42778338 -76966560 - L2 LINE L2 -1050 2264 1610 370 319 9 9 chr13 42779058 42779171 -76965727 - MIR3 SINE MIR -35 173 61 23 0 0 0 chr13 42779174 42779197 -76965701 + AT_rich Low_complexity Low_complexity 1 23 0 394 267 19 0 chr13 42779201 42779306 -76965592 - MIR SINE MIR -3 259 153 749 181 87 0 chr13 42779488 42779626 -76965272 + MER5A DNA MER1_type 35 184 -5 2277 310 95 55 chr13 42779650 42780537 -76964361 + ERVL LTR ERVL 2256 3219 -2545 2211 62 66 3 chr13 42780537 42780825 -76964073 - AluY SINE Alu -5 306 1 2277 310 95 55 chr13 42780825 42781310 -76963588 + ERVL LTR ERVL 3219 3683 -2081 377 283 113 40 chr13 42781732 42782031 -76962867 - MLT1H LTR MaLR -200 349 1 332 341 98 0 chr13 42782127 42782250 -76962648 - L2 LINE L2 -8 3305 3171 339 294 128 0 chr13 42782281 42782390 -76962508 - MIR SINE MIR -87 175 53 196 303 45 84 chr13 42783074 42783229 -76961669 - MIR SINE MIR -77 185 37 648 266 36 39 chr13 42785584 42785803 -76959095 - MIR SINE MIR -46 216 2 1337 179 29 7 chr13 42785847 42786120 -76958778 + L1MB8 LINE L1 5891 6169 -9 228 359 54 74 chr13 42786135 42786486 -76958412 - L2 LINE L2 -101 3171 2828 1839 166 3 7 chr13 42786587 42786895 -76958003 - AluJo SINE Alu -5 307 1 2190 119 0 0 chr13 42787644 42787939 -76956959 - AluSx SINE Alu -17 295 1 35 71 0 0 chr13 42788318 42788388 -76956510 + AT_rich Low_complexity Low_complexity 1 70 0 257 350 0 16 chr13 42788552 42788675 -76956223 + CT-rich Low_complexity Low_complexity 5 125 0 204 40 0 0 chr13 42788929 42788954 -76955944 + (T)n Simple_repeat Simple_repeat 1 25 0 2336 162 29 10 chr13 42789237 42789651 -76955247 - MSTB LTR MaLR -4 422 1 2098 115 3 0 chr13 42790068 42790355 -76954543 + AluSp SINE Alu 1 288 -25 186 43 0 0 chr13 42790355 42790378 -76954520 + (TA)n Simple_repeat Simple_repeat 2 24 0 2249 114 3 0 chr13 42790831 42791138 -76953760 + AluSx SINE Alu 1 308 -4 2731 96 48 32 chr13 42791207 42791251 -76953647 - MLT2A1 LTR ERVL 0 444 402 2065 138 0 19 chr13 42791251 42791569 -76953329 + AluSx SINE Alu 1 312 0 2731 96 48 32 chr13 42791569 42791592 -76953306 - MLT2A1 LTR ERVL -42 402 381 315 0 0 0 chr13 42791592 42791627 -76953271 + (TA)n Simple_repeat Simple_repeat 2 36 0 2731 96 48 32 chr13 42791627 42791995 -76952903 - MLT2A1 LTR ERVL -63 381 1 2665 77 51 134 chr13 42792460 42792913 -76951985 + MLT2A2 LTR ERVL 1 411 -42 504 0 0 0 chr13 42792913 42792969 -76951929 + (TA)n Simple_repeat Simple_repeat 2 57 0 2665 77 51 134 chr13 42792969 42793007 -76951891 + MLT2A2 LTR ERVL 411 451 -2 380 181 0 14 chr13 42793333 42793405 -76951493 + L1MEd LINE L1 1181 1251 -4868 1147 228 63 77 chr13 42793541 42793576 -76951322 - L1M4 LINE L1 -2648 3498 3464 1459 148 9 4 chr13 42793576 42793805 -76951093 + AluJb SINE Alu 74 303 -9 1147 228 63 77 chr13 42793805 42794325 -76950573 - L1M4 LINE L1 -2682 3464 2951 1274 155 10 0 chr13 42794325 42794531 -76950367 + MER57A LTR ERV1 1 208 -195 837 154 66 6 chr13 42794538 42794720 -76950178 - L1M4 LINE L1 -3197 2949 2757 2448 179 18 53 chr13 42794721 42795196 -76949702 + MLT1C LTR MaLR 4 467 0 1975 237 25 23 chr13 42795196 42795243 -76949655 - L1M4 LINE L1 -3428 2718 2673 2258 143 79 13 chr13 42795243 42795635 -76949263 - MER47B DNA MER2_type 0 418 1 1975 237 25 23 chr13 42795635 42796190 -76948708 - L1M4 LINE L1 -3473 2673 2115 893 130 0 15 chr13 42796199 42796330 -76948568 + FLAM_C SINE Alu 2 130 -13 2093 145 10 3 chr13 42796455 42796765 -76948133 - AluSx SINE Alu 0 312 1 503 148 10 10 chr13 42796836 42796937 -76947961 - MER69 DNA AcHobo -416 2110 2010 * 1793 244 127 10 chr13 42796935 42797439 -76947459 - MER69 DNA AcHobo -1958 568 6 592 319 111 62 chr13 42797648 42798404 -76946494 + L2 LINE L2 2153 2945 -369 461 344 89 37 chr13 42798424 42798852 -76946046 + L2 LINE L2 2509 2958 -356 21 57 0 0 chr13 42798951 42798986 -76945912 + AT_rich Low_complexity Low_complexity 1 35 0 318 299 74 65 chr13 42799150 42799381 -76945517 + L3 LINE CR1 1333 1565 -12 273 29 0 0 chr13 42799523 42799557 -76945341 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 702 39 29 0 chr13 42801166 42801268 -76943630 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 201 39 0 0 chr13 42801270 42801296 -76943602 + (TCTCTG)n Simple_repeat Simple_repeat 2 27 0 312 321 12 75 chr13 42801342 42801582 -76943316 + MARNA DNA Mariner 348 572 -14 208 246 0 0 chr13 42804575 42804632 -76940266 + (TA)n Simple_repeat Simple_repeat 2 58 0 1069 81 0 32 chr13 42805318 42805503 -76939395 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 201 74 0 0 chr13 42805510 42805537 -76939361 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 202 235 20 0 chr13 42805637 42805688 -76939210 + GA-rich Low_complexity Low_complexity 4 55 0 193 146 18 127 chr13 42805791 42805846 -76939052 - L2 LINE L2 0 3313 3265 1273 270 106 23 chr13 42805969 42806056 -76938842 + LTR16A LTR ERVL 22 100 -350 2493 195 122 4 chr13 42806056 42806477 -76938421 + MLT2B2 LTR ERVL 1 482 -33 288 53 0 0 chr13 42806477 42806515 -76938383 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 2493 195 122 4 chr13 42806515 42806554 -76938344 + MLT2B2 LTR ERVL 482 515 0 1273 270 106 23 chr13 42806554 42806862 -76938036 + LTR16A LTR ERVL 100 450 0 1853 328 53 27 chr13 42807004 42808040 -76936858 + HERVL LTR ERVL 4225 5287 -367 992 243 65 11 chr13 42808321 42808597 -76936301 + LTR16A LTR ERVL 160 450 0 576 323 194 27 chr13 42808597 42809254 -76935644 - L2 LINE L2 -181 3132 2364 232 258 65 0 chr13 42809466 42809528 -76935370 - MER5A DNA MER1_type -113 76 11 426 287 79 24 chr13 42809560 42809724 -76935174 + MIR SINE MIR 36 208 -54 339 340 54 15 chr13 42811579 42811782 -76933116 + MIR SINE MIR 49 259 -3 2006 125 0 17 chr13 42812077 42812366 -76932532 - AluSx SINE Alu -28 284 1 3832 154 36 39 chr13 42812582 42812703 -76932195 + L1MC2 LINE L1 5593 5713 -631 922 237 90 88 chr13 42812703 42813239 -76931659 + MER34 LTR ERV1 5 541 -1 3832 154 36 39 chr13 42813239 42813862 -76931036 + L1MC2 LINE L1 5713 6335 -9 224 260 0 0 chr13 42814048 42814098 -76930800 + T-rich Low_complexity Low_complexity 1 50 0 3125 240 47 13 chr13 42814483 42815501 -76929397 - L1ME3 LINE L1 0 6162 5107 412 288 192 0 chr13 42815566 42815806 -76929092 - L1ME3 LINE L1 -1227 4919 4634 4308 261 104 61 chr13 42815866 42816189 -76928709 - HAL1 LINE L1 -5 2502 2194 2330 112 3 0 chr13 42816189 42816501 -76928397 - AluSq SINE Alu 0 313 1 4308 261 104 61 chr13 42816501 42816782 -76928116 - HAL1 LINE L1 -313 2194 1927 1811 177 18 81 chr13 42816782 42817167 -76927731 - MLT1A1 LTR MaLR -4 361 1 4308 261 104 61 chr13 42817167 42818958 -76925940 - HAL1 LINE L1 -580 1927 3 955 184 0 0 chr13 42819215 42819367 -76925531 + FRAM SINE Alu 1 151 -25 24 0 0 0 chr13 42819513 42819537 -76925361 + AT_rich Low_complexity Low_complexity 1 24 0 2201 86 0 24 chr13 42821035 42821326 -76923572 - AluY SINE Alu -12 299 16 547 181 16 50 chr13 42821606 42821621 -76923277 + L1P3 LINE L1 5477 5491 -671 4942 57 2 12 chr13 42821621 42822216 -76922682 - L1PA7 LINE L1 0 6154 5566 547 181 16 50 chr13 42822216 42822312 -76922586 + L1PA7 LINE L1 5491 5581 -581 2324 105 0 0 chr13 42822316 42822620 -76922278 + AluY SINE Alu 1 304 -7 283 267 188 0 chr13 42822763 42822864 -76922034 - L2 LINE L2 -12 3301 3182 1530 230 34 27 chr13 42823266 42823675 -76921223 - LTR52 LTR ERVL -9 412 1 225 0 0 0 chr13 42824034 42824059 -76920839 + (T)n Simple_repeat Simple_repeat 1 25 0 223 360 86 14 chr13 42824102 42824241 -76920657 - MER5A DNA MER1_type -6 183 35 355 262 121 13 chr13 42824499 42824648 -76920250 - MIR SINE MIR -50 212 48 1979 79 64 4 chr13 42824665 42824966 -76919932 - AluY SINE Alu 0 317 1 557 354 34 20 chr13 42825287 42825581 -76919317 - L2 LINE L2 -398 2916 2619 1966 215 8 11 chr13 42825646 42826009 -76918889 + MLT1A1 LTR MaLR 4 365 0 35 24 0 0 chr13 42826192 42826234 -76918664 + AT_rich Low_complexity Low_complexity 1 42 0 2115 78 0 84 chr13 42826356 42826676 -76918222 - AluSx SINE Alu -19 293 1 332 250 13 0 chr13 42826946 42827022 -76917876 - MLT1K LTR MaLR -2 586 510 1765 205 68 20 chr13 42827901 42827952 -76916946 - MLT2D LTR ERVL 0 414 367 216 0 0 0 chr13 42827952 42827976 -76916922 + (CAGAGA)n Simple_repeat Simple_repeat 1 24 0 1765 205 68 20 chr13 42827976 42828319 -76916579 - MLT2D LTR ERVL -47 367 1 1574 174 55 4 chr13 42830102 42830377 -76914521 + AluJo SINE Alu 1 289 -23 533 219 75 147 chr13 42831142 42831516 -76913382 - L1MC4 LINE L1 -2 8040 7694 183 80 0 0 chr13 42831520 42831545 -76913353 + (T)n Simple_repeat Simple_repeat 1 25 0 8418 12 3 0 chr13 42831567 42833089 -76911809 - L1PA2 LINE L1 0 6155 4630 37455 36 29 2 chr13 42836474 42840983 -76903915 - L1PA2 LINE L1 -1514 4632 2 594 295 28 31 chr13 42840994 42841282 -76903616 - L1MC4 LINE L1 -364 7678 7392 1567 235 57 40 chr13 42841341 42841817 -76903081 + MLT1D LTR MaLR 22 505 0 527 230 11 11 chr13 42842390 42842568 -76902330 + CT-rich Low_complexity Low_complexity 3 180 0 233 205 0 0 chr13 42842568 42842607 -76902291 + polypyrimidine Low_complexity Low_complexity 2 40 0 231 167 0 0 chr13 42842724 42842766 -76902132 + CT-rich Low_complexity Low_complexity 1 42 0 317 147 0 29 chr13 42842776 42842844 -76902054 + (TCTCCC)n Simple_repeat Simple_repeat 3 68 0 1587 263 92 0 chr13 42843355 42843788 -76901110 - MER45C DNA AcHobo -480 473 1 235 255 0 0 chr13 42845062 42845113 -76899785 - MER63 DNA MER1_type 0 1062 1012 181 315 130 37 chr13 42845500 42845608 -76899290 - L2 LINE L2 -16 3256 3139 297 303 74 19 chr13 42845707 42845869 -76899029 + L1ME4a LINE L1 5945 6115 -6 1741 152 4 14 chr13 42845946 42846223 -76898675 - MER1B DNA MER1_type -65 274 1 329 314 94 54 chr13 42847444 42847721 -76897177 - L2 LINE L2 0 3313 3026 473 305 142 19 chr13 42849789 42850163 -76894735 - L1ME4a LINE L1 -202 5919 5500 251 238 0 32 chr13 42850213 42850276 -76894622 - MIR SINE MIR -114 148 88 277 242 33 44 chr13 42851978 42852069 -76892829 + MLT2E LTR ERVL 49 138 -490 655 241 38 72 chr13 42852440 42852681 -76892217 + L1ME3A LINE L1 5887 6118 -52 2363 108 3 0 chr13 42852681 42852987 -76891911 - AluSp SINE Alu -6 307 1 655 241 38 72 chr13 42852987 42853036 -76891862 + L1ME3A LINE L1 6118 6167 -3 242 254 4 4 chr13 42853102 42853179 -76891719 - MIR SINE MIR -45 163 86 2311 100 3 13 chr13 42853948 42854258 -76890640 - AluSx SINE Alu -5 307 1 281 355 45 0 chr13 42854362 42854472 -76890426 - L2 LINE L2 0 3272 3158 272 354 12 0 chr13 42855585 42855667 -76889231 + MIR SINE MIR 30 112 -96 185 362 8 31 chr13 42855659 42855786 -76889112 + MER5A DNA MER1_type 38 161 -28 * 6006 93 12 40 chr13 42857975 42859060 -76885838 + L1PA13 LINE L1 5105 6162 -1 4445 146 28 4 chr13 42860118 42860823 -76884075 - MER50 LTR ERV1 -12 722 1 230 325 50 15 chr13 42863355 42863488 -76881410 + MIR SINE MIR 1 144 -118 1729 113 50 108 chr13 42863488 42863844 -76881054 + THE1C LTR MaLR 1 333 -42 2114 143 0 0 chr13 42863844 42864137 -76880761 - AluSx SINE Alu -19 293 1 1729 113 50 108 chr13 42864137 42864178 -76880720 + THE1C LTR MaLR 333 375 0 577 208 130 0 chr13 42864392 42864546 -76880352 - MIR SINE MIR -30 232 59 1289 235 81 47 chr13 42864547 42864994 -76879904 + MLT1C LTR MaLR 6 467 0 21 0 0 0 chr13 42865254 42865275 -76879623 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 42865401 42865445 -76879453 + AT_rich Low_complexity Low_complexity 1 44 0 4288 77 266 3 chr13 42866295 42866949 -76877949 + LTR12 LTR ERV1 1 826 0 23 0 0 0 chr13 42867094 42867117 -76877781 + AT_rich Low_complexity Low_complexity 1 23 0 1126 205 117 56 chr13 42868568 42868910 -76875988 + MLT1A1 LTR MaLR 1 363 -2 223 276 48 38 chr13 42868947 42869052 -76875846 + L2 LINE L2 2394 2499 -815 2144 124 0 43 chr13 42869083 42869406 -76875492 - AluSx SINE Alu -3 309 1 266 257 43 107 chr13 42870675 42870858 -76874040 - MER5A DNA MER1_type 0 189 7 1226 300 72 9 chr13 42871527 42872040 -76872858 - MLT1G1 LTR MaLR -7 588 3 53 49 0 0 chr13 42875361 42875442 -76869456 + AT_rich Low_complexity Low_complexity 1 81 0 1596 203 15 30 chr13 42875544 42875943 -76868955 - MER69 DNA AcHobo 0 2526 2134 1597 259 100 34 chr13 42875944 42876532 -76868366 - MER69 DNA AcHobo -1899 627 1 195 353 60 26 chr13 42876655 42876921 -76867977 - L2 LINE L2 -1217 2097 1823 398 255 186 49 chr13 42877431 42877694 -76867204 - L1ME4a LINE L1 -261 5860 5562 2199 117 0 3 chr13 42878163 42878463 -76866435 - AluSq SINE Alu -13 300 2 197 373 36 0 chr13 42878582 42878692 -76866206 - L2 LINE L2 -245 3027 2914 320 260 41 18 chr13 42879194 42879344 -76865554 + MIR3 SINE MIR 30 181 -27 1720 134 76 44 chr13 42880121 42880422 -76864476 + AluJo SINE Alu 1 310 0 215 356 0 0 chr13 42880584 42880657 -76864241 - MIR SINE MIR -79 129 57 * 225 219 0 31 chr13 42880643 42880707 -76864191 + L2 LINE L2 3250 3311 -2 353 336 39 0 chr13 42881046 42881174 -76863724 + LTR67 LTR ERVL 110 242 -315 278 301 156 23 chr13 42881543 42881716 -76863182 + L2 LINE L2 3118 3313 0 188 255 121 64 chr13 42882451 42882592 -76862306 - L2 LINE L2 -175 3097 2949 180 316 0 0 chr13 42882783 42882840 -76862058 + L2 LINE L2 2907 2963 -309 522 269 0 44 chr13 42882928 42883088 -76861810 + L2 LINE L2 3161 3313 0 435 253 129 39 chr13 42883235 42883413 -76861485 - L2 LINE L2 -18 3295 3102 232 209 42 49 chr13 42884070 42884176 -76860722 - MIR SINE MIR -73 135 42 553 246 67 58 chr13 42884180 42884404 -76860494 - L1MC5 LINE L1 -30 7931 7706 233 283 0 0 chr13 42884485 42884545 -76860353 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 290 164 18 0 chr13 42884608 42884663 -76860235 + AluS SINE Alu 2 57 -242 531 333 44 27 chr13 42884808 42885033 -76859865 - MER115 DNA AcHobo -375 318 90 731 228 109 50 chr13 42885162 42885190 -76859708 + MLT1E3 LTR MaLR 4 29 -595 1574 213 133 42 chr13 42885190 42885623 -76859275 + MLT2B1 LTR ERVL 3 484 -36 414 0 0 0 chr13 42885623 42885669 -76859229 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1574 213 133 42 chr13 42885669 42885710 -76859188 + MLT2B1 LTR ERVL 484 520 0 731 228 109 50 chr13 42885710 42886037 -76858861 + MLT1E3 LTR MaLR 29 387 -237 503 132 0 0 chr13 42886153 42886229 -76858669 - AluS SINE Alu -235 77 2 217 273 45 34 chr13 42887474 42887562 -76857336 - MIR3 SINE MIR -2 206 118 240 291 97 10 chr13 42887863 42887966 -76856932 + MIR3 SINE MIR 85 196 -12 473 92 0 0 chr13 42888853 42888918 -76855980 + Alu SINE Alu 227 291 -19 667 251 96 17 chr13 42888938 42889177 -76855721 + MER112 DNA MER1_type 2 259 -1 221 312 0 64 chr13 42889602 42889711 -76855187 + MIR SINE MIR 87 188 -74 399 301 18 24 chr13 42889834 42890000 -76854898 - MIR SINE MIR -16 246 82 7501 42 5 0 chr13 42890108 42891667 -76853231 + L1PA6 LINE L1 4585 6149 -5 198 167 0 0 chr13 42891682 42891718 -76853180 + A-rich Low_complexity Low_complexity 1 36 0 244 266 133 16 chr13 42891719 42891847 -76853051 + L1MC5 LINE L1 7743 7885 -76 973 198 62 41 chr13 42891856 42892099 -76852799 + L1MC/D LINE L1 5387 5634 -2174 218 223 146 29 chr13 42892343 42892446 -76852452 - MIR3 SINE MIR -27 181 67 806 180 0 0 chr13 42892857 42892985 -76851913 + FLAM_C SINE Alu 1 128 -5 2197 120 7 10 chr13 42894117 42894425 -76850473 + AluSx SINE Alu 2 308 -4 622 197 116 34 chr13 42894425 42894658 -76850240 + L1M4 LINE L1 3091 3342 -2804 2771 221 68 41 chr13 42894680 42895369 -76849529 + MER21B LTR ERV1 20 732 -131 192 77 0 0 chr13 42895369 42895395 -76849503 + (AATTG)n Simple_repeat Simple_repeat 1 26 0 2771 221 68 41 chr13 42895395 42895459 -76849439 + MER21B LTR ERV1 732 793 -70 1459 228 32 39 chr13 42895489 42895924 -76848974 + L1M4 LINE L1 3340 3771 -2375 2241 107 3 19 chr13 42896084 42896393 -76848505 + AluSx SINE Alu 5 308 -4 472 200 0 27 chr13 42896527 42896637 -76848261 + L1MC5 LINE L1 7808 7914 -47 2573 238 83 29 chr13 42896699 42898301 -76846597 + L1M4 LINE L1 48 1821 -4825 187 283 44 53 chr13 42898969 42899082 -76845816 - MIR SINE MIR 0 262 151 2350 110 0 0 chr13 42899555 42899854 -76845044 - AluSq SINE Alu -14 299 1 425 222 21 65 chr13 42899904 42900109 -76844789 - MLT1H LTR MaLR -53 496 241 1794 168 3 0 chr13 42900415 42900700 -76844198 + AluJb SINE Alu 5 290 -22 236 296 0 0 chr13 42901449 42901503 -76843395 + MIR SINE MIR 94 147 -115 1227 102 6 6 chr13 42902059 42902235 -76842663 + L1P5 LINE L1 5570 5745 -409 434 70 23 105 chr13 42902335 42902421 -76842477 + L1MB5 LINE L1 6090 6168 -6 232 277 53 11 chr13 42902435 42902529 -76842369 - MLT1J LTR MaLR -310 201 104 219 209 99 55 chr13 42902736 42902827 -76842071 + MIR3 SINE MIR 89 183 -25 2702 191 111 44 chr13 42903513 42904213 -76840685 - MER21B LTR ERV1 -57 806 60 2649 184 86 12 chr13 42904319 42905048 -76839850 + L1MB3 LINE L1 4782 5593 -590 1509 134 14 28 chr13 42905052 42905335 -76839563 + L1MB3 LINE L1 5904 6182 -1 818 280 36 18 chr13 42905367 42905753 -76839145 + L1M4 LINE L1 2265 2657 -3989 797 286 97 19 chr13 42906163 42906534 -76838364 + LTR16C LTR ERVL 92 491 0 475 318 179 14 chr13 42906709 42907061 -76837837 - L2 LINE L2 -765 2549 2140 508 254 164 0 chr13 42907320 42907485 -76837413 + MIR SINE MIR 14 205 -57 2303 91 3 0 chr13 42907558 42907865 -76837033 + AluSp SINE Alu 1 308 -5 911 176 74 0 chr13 42908542 42908718 -76836180 - MER5A DNA MER1_type 0 189 1 684 251 25 6 chr13 42909145 42909308 -76835590 - Charlie8 DNA MER1_type -2241 176 11 215 196 36 0 chr13 42909318 42909374 -76835524 - L2 LINE L2 -541 2773 2716 642 225 33 33 chr13 42909798 42909949 -76834949 - MLT1G LTR MaLR 0 590 440 216 135 216 27 chr13 42910082 42910156 -76834742 + MIR SINE MIR 33 120 -88 1951 129 7 7 chr13 42910676 42910970 -76833928 - AluSx SINE Alu -18 294 1 601 216 32 16 chr13 42910970 42911146 -76833752 - L1MEc LINE L1 -4310 2086 1905 2459 281 35 29 chr13 42911166 42911936 -76832962 - HERV16 LTR ERVL -3667 1329 555 648 165 0 19 chr13 42912021 42912124 -76832774 - FRAM SINE Alu -16 160 60 462 274 68 7 chr13 42912491 42912637 -76832261 + MER117 DNA MER1_type 6 160 -37 196 270 243 0 chr13 42912835 42912909 -76831989 - MIR3 SINE MIR -54 154 63 1789 159 0 3 chr13 42913483 42913784 -76831114 - AluJb SINE Alu -12 300 1 372 301 9 0 chr13 42913853 42913966 -76830932 - MIR SINE MIR -70 192 79 385 333 18 0 chr13 42915184 42915298 -76829600 + MIR3 SINE MIR 86 201 -7 696 97 11 0 chr13 42915459 42915552 -76829346 - AluSq/x SINE Alu -204 108 15 505 317 112 18 chr13 42916108 42916332 -76828566 + MIR SINE MIR 9 253 -9 207 180 45 112 chr13 42916367 42916456 -76828442 + MIR SINE MIR 69 151 -57 1780 144 7 7 chr13 42917144 42917436 -76827462 + AluSx SINE Alu 1 292 -20 393 211 35 35 chr13 42917601 42917715 -76827183 - MER112 DNA MER1_type 0 260 147 2155 59 0 24 chr13 42917765 42918076 -76826822 + AluY SINE Alu 1 304 0 311 270 53 112 chr13 42918707 42918859 -76826039 - MIR SINE MIR -65 143 1 1080 123 57 75 chr13 42919439 42919667 -76825231 - AluJo SINE Alu 0 312 89 794 220 109 43 chr13 42919767 42919829 -76825069 - L1MEc LINE L1 -2987 3228 3172 2117 111 3 0 chr13 42919829 42920136 -76824762 - AluSp SINE Alu -5 308 1 794 220 109 43 chr13 42920136 42920469 -76824429 - L1MEc LINE L1 -3043 3172 2807 * 1232 235 40 9 chr13 42920462 42920883 -76824015 - L1MEc LINE L1 -3873 2523 2090 2058 136 0 3 chr13 42920886 42921194 -76823704 - AluSx SINE Alu -5 307 1 287 288 0 0 chr13 42922062 42922128 -76822770 - MIR SINE MIR -13 249 184 316 329 169 30 chr13 42922326 42922563 -76822335 - L3 LINE CR1 -29 1548 1279 560 319 32 0 chr13 42923057 42923214 -76821684 + L2 LINE L2 3111 3272 0 197 118 59 0 chr13 42923499 42923533 -76821365 + MIR SINE MIR 109 144 -64 200 326 38 53 chr13 42923852 42923984 -76820914 - L3 LINE CR1 -32 1545 1416 607 321 80 13 chr13 42924296 42924533 -76820365 + MIR SINE MIR 9 261 -1 303 293 154 8 chr13 42924591 42924714 -76820184 + MIR SINE MIR 58 198 -64 311 296 10 0 chr13 42924722 42924820 -76820078 + MER94 DNA DNA 1 99 -35 1760 64 0 0 chr13 42924891 42925110 -76819788 - AluY SINE Alu -9 302 84 1467 177 7 40 chr13 42925179 42925478 -76819420 + AluJo SINE Alu 19 307 -5 216 198 359 38 chr13 42925820 42925926 -76818972 - MIR SINE MIR -107 155 16 263 307 193 9 chr13 42926431 42926545 -76818353 + MIR SINE MIR 96 230 -32 22 0 0 0 chr13 42926564 42926586 -76818312 + AT_rich Low_complexity Low_complexity 1 22 0 1907 112 24 10 chr13 42926590 42926884 -76818014 + AluSx SINE Alu 1 298 -14 456 337 87 0 chr13 42927011 42927183 -76817715 + MIR3 SINE MIR 2 143 -65 2165 104 0 3 chr13 42927712 42928009 -76816889 - AluSq SINE Alu -15 298 3 261 242 17 92 chr13 42928061 42928181 -76816717 + L2 LINE L2 3151 3261 -52 767 180 16 0 chr13 42928208 42928336 -76816562 + AluJo SINE Alu 2 131 -181 1950 137 0 0 chr13 42928528 42928887 -76816011 - AluSx SINE Alu 0 359 1 691 305 32 28 chr13 42928948 42929197 -76815701 + MIR SINE MIR 7 256 -6 1999 123 7 13 chr13 42929999 42930300 -76814598 + AluSx SINE Alu 1 299 -13 898 188 0 0 chr13 42930300 42930460 -76814438 + AluJo SINE Alu 134 293 -19 184 248 67 86 chr13 42931384 42931489 -76813409 + MIR SINE MIR 30 132 -76 3592 271 69 63 chr13 42931648 42931920 -76812978 - HAL1 LINE L1 -429 2078 1809 1694 177 18 81 chr13 42931920 42932305 -76812593 - MLT1A1 LTR MaLR -4 361 1 3592 271 69 63 chr13 42932305 42934096 -76810802 - HAL1 LINE L1 -698 1809 3 904 184 0 0 chr13 42934353 42934505 -76810393 + FRAM SINE Alu 1 151 -25 24 0 0 0 chr13 42934651 42934675 -76810223 + AT_rich Low_complexity Low_complexity 1 24 0 2094 86 0 24 chr13 42936173 42936464 -76808434 - AluY SINE Alu -12 299 16 547 181 16 50 chr13 42936744 42936759 -76808139 + L1P3 LINE L1 5477 5491 -671 4702 57 2 12 chr13 42936759 42937354 -76807544 - L1PA7 LINE L1 0 6154 5566 547 181 16 50 chr13 42937354 42937450 -76807448 + L1PA7 LINE L1 5491 5581 -581 2124 112 0 0 chr13 42937454 42937749 -76807149 + AluY SINE Alu 1 295 -16 944 260 22 5 chr13 42938078 42938301 -76806597 - MIR SINE MIR 0 262 36 437 224 28 56 chr13 42938301 42938444 -76806454 - L1MC/D LINE L1 -2012 5796 5658 1986 123 13 25 chr13 42938483 42938799 -76806099 + AluSx SINE Alu 1 312 0 231 336 44 9 chr13 42939170 42939283 -76805615 + MIR3 SINE MIR 38 154 -54 433 355 15 30 chr13 42939332 42939535 -76805363 + L2 LINE L2 2848 3047 -266 1007 226 51 117 chr13 42943230 42943800 -76801098 + L2 LINE L2 2787 3313 0 2903 205 62 10 chr13 42945283 42945897 -76799001 - MER82 DNA MER2_type -7 646 1 199 201 191 92 chr13 42945948 42946071 -76798827 - MIR SINE MIR -66 142 16 415 314 39 13 chr13 42946360 42946513 -76798385 + MIR3 SINE MIR 9 165 -43 21 36 0 0 chr13 42947163 42947191 -76797707 + AT_rich Low_complexity Low_complexity 1 28 0 418 291 148 22 chr13 42948492 42948715 -76796183 + MIR SINE MIR 10 260 -2 1181 195 7 77 chr13 42948833 42948987 -76795911 + MLT1D LTR MaLR 247 356 -149 872 132 0 22 chr13 42948987 42949123 -76795775 - FLAM_C SINE Alu 0 133 1 1181 195 7 77 chr13 42949123 42949264 -76795634 + MLT1D LTR MaLR 356 505 0 267 246 8 67 chr13 42949388 42949522 -76795376 + GA-rich Low_complexity Low_complexity 5 130 0 1101 239 88 73 chr13 42949757 42950302 -76794596 + HAL1 LINE L1 1238 1790 -717 1061 216 46 0 chr13 42950361 42950579 -76794319 + AluJb SINE Alu 85 312 0 287 164 16 0 chr13 42950579 42950640 -76794258 + GA-rich Low_complexity Low_complexity 4 65 0 922 243 112 36 chr13 42950646 42951084 -76793814 + HAL1 LINE L1 1869 2349 -158 2093 97 10 0 chr13 42951084 42951382 -76793516 + AluSq SINE Alu 1 301 -12 922 243 112 36 chr13 42951382 42951436 -76793462 + HAL1 LINE L1 2349 2398 -109 338 0 0 23 chr13 42951464 42951507 -76793391 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 8057 8 0 0 chr13 42951507 42952546 -76792352 - L1PA3 LINE L1 -10 6145 5108 7522 32 0 0 chr13 42952546 42953427 -76791471 + L1PA3 LINE L1 4229 5109 -1037 317 305 118 17 chr13 42953585 42953724 -76791174 - MIR SINE MIR -81 181 32 510 295 31 16 chr13 42955981 42956174 -76788724 + MIR SINE MIR 39 234 -28 271 340 17 8 chr13 42956417 42956627 -76788271 - L1M3 LINE L1 -345 5826 5617 1821 100 52 8 chr13 42958330 42958580 -76786318 - AluSc SINE Alu -5 304 44 213 333 0 0 chr13 42960980 42961040 -76783858 + CT-rich Low_complexity Low_complexity 1 60 0 755 219 38 0 chr13 42964362 42964522 -76780376 + MER5A DNA MER1_type 5 170 -19 648 309 88 5 chr13 42967672 42967889 -76777009 - MIR SINE MIR -6 256 22 327 325 81 16 chr13 42968499 42968622 -76776276 + MIR SINE MIR 1 131 -131 563 179 50 1 chr13 42968893 42969026 -76775872 + MLT1B LTR MaLR 1 125 -265 1171 181 15 31 chr13 42969115 42969375 -76775523 + MLT1B LTR MaLR 135 390 0 202 167 33 17 chr13 42969425 42969485 -76775413 + T-rich Low_complexity Low_complexity 5 65 0 24 0 0 0 chr13 42969489 42969513 -76775385 + AT_rich Low_complexity Low_complexity 1 24 0 511 241 43 32 chr13 42970736 42970923 -76773975 - MLT1C LTR MaLR -3 464 276 1929 141 0 23 chr13 42970971 42971275 -76773623 - AluSx SINE Alu -15 297 1 238 269 26 13 chr13 42971702 42971780 -76773118 + L2 LINE L2 2992 3070 -202 2328 107 0 0 chr13 42972694 42973049 -76771849 - L1P LINE L1 -1263 4883 4529 231 189 139 50 chr13 42973451 42973631 -76771267 - Charlie7 DNA MER1_type -67 2545 2350 667 258 113 56 chr13 42973636 42973938 -76770960 - MLT1H LTR MaLR 0 549 231 1735 137 8 4 chr13 42973966 42974228 -76770670 - AluSc SINE Alu -3 306 44 3759 171 66 34 chr13 42974228 42975108 -76769790 - L1MC2 LINE L1 -14 6330 5423 1684 209 124 26 chr13 42975277 42976004 -76768894 - Charlie7 DNA MER1_type -294 2318 1521 348 254 164 38 chr13 42976004 42976217 -76768681 - Charlie7 DNA MER1_type -2286 326 87 737 206 139 10 chr13 42976875 42977069 -76767829 - MER20 DNA MER1_type 0 219 1 1335 270 24 34 chr13 42977452 42977936 -76766962 + L2 LINE L2 2542 3020 -293 1862 155 21 3 chr13 42977936 42978265 -76766633 + MSTB LTR MaLR 91 425 -1 1326 198 49 34 chr13 42978583 42978907 -76765991 + MLT1A1 LTR MaLR 35 363 -2 1949 160 7 74 chr13 42979099 42979517 -76765381 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr13 42979517 42979541 -76765357 + AT_rich Low_complexity Low_complexity 1 24 0 2011 154 3 7 chr13 42979691 42979996 -76764902 - AluSx SINE Alu -4 308 5 223 327 19 0 chr13 42980128 42980180 -76764718 + L2 LINE L2 3134 3186 -86 297 304 68 68 chr13 42980273 42980523 -76764375 + MLT1J LTR MaLR 101 350 -161 1356 274 68 54 chr13 42980523 42981714 -76763184 - L1MEd LINE L1 -4604 1525 323 383 379 9 23 chr13 42982014 42982233 -76762665 + L1MC4a LINE L1 5708 5923 -1885 259 212 24 71 chr13 42982424 42982509 -76762389 + MIR SINE MIR 182 262 0 2526 69 0 0 chr13 42982621 42982924 -76761974 - AluSp SINE Alu -10 303 1 1846 220 82 76 chr13 42983995 42984164 -76760734 - MER50 LTR ERV1 0 734 567 2151 93 17 0 chr13 42984164 42984455 -76760443 + AluSq SINE Alu 1 296 -17 1846 220 82 76 chr13 42984455 42984468 -76760430 - MER50 LTR ERV1 -167 567 556 284 0 28 0 chr13 42984468 42984504 -76760394 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 1846 220 82 76 chr13 42984504 42985043 -76759855 - MER50 LTR ERV1 -178 556 8 222 37 0 0 chr13 42986057 42986084 -76758814 - MIR SINE MIR -64 144 118 238 254 70 0 chr13 42986775 42986856 -76758042 + MIR3 SINE MIR 75 159 -49 2317 101 3 0 chr13 42987589 42987886 -76757012 - AluSg SINE Alu -12 298 1 778 330 83 46 chr13 42988539 42988802 -76756096 + L2 LINE L2 2329 2581 -691 2154 141 82 25 chr13 42988802 42989207 -76755691 - MSTA LTR MaLR 0 428 1 778 330 83 46 chr13 42989207 42989646 -76755252 + L2 LINE L2 2581 3064 -208 317 242 0 11 chr13 42989966 42990061 -76754837 - L1ME LINE L1 -3775 2305 2212 228 347 8 0 chr13 42990340 42990464 -76754434 - L1ME LINE L1 -4579 1682 1558 436 268 42 38 chr13 42990495 42990708 -76754190 + L1MC5 LINE L1 7321 7534 -427 431 283 73 26 chr13 42991088 42991279 -76753619 - L1ME LINE L1 -4814 1268 1069 302 278 38 22 chr13 42991343 42991579 -76753319 - L1ME LINE L1 -5040 1043 807 368 319 128 14 chr13 42992370 42992511 -76752387 + L2 LINE L2 3116 3272 0 485 244 37 7 chr13 42992513 42992648 -76752250 - MIR SINE MIR -38 224 86 25 31 0 0 chr13 42992995 42993027 -76751871 + AT_rich Low_complexity Low_complexity 1 32 0 632 105 21 6 chr13 42993028 42993174 -76751724 - L1MC1 LINE L1 0 6333 6155 258 244 64 0 chr13 42993702 42993780 -76751118 + MIR SINE MIR 93 175 -87 291 54 0 0 chr13 42994750 42994787 -76750111 + (TG)n Simple_repeat Simple_repeat 2 38 0 269 268 177 26 chr13 42995347 42995549 -76749349 - MIR3 SINE MIR -4 258 35 208 368 110 13 chr13 42995961 42996189 -76748709 + L2 LINE L2 2926 3175 -97 289 268 147 45 chr13 42997173 42997321 -76747577 + MIR SINE MIR 23 189 -73 478 234 117 7 chr13 42997321 42997475 -76747423 + MER5B DNA MER1_type 4 174 -4 203 140 18 105 chr13 42998900 42998957 -76745941 + L2 LINE L2 3175 3226 -87 501 291 34 17 chr13 42999306 42999477 -76745421 - MIR SINE MIR -65 143 5 572 246 40 75 chr13 43000381 43000465 -76744433 - MIR SINE MIR -70 192 107 186 43 0 0 chr13 43000465 43000488 -76744410 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 572 246 40 75 chr13 43000488 43000602 -76744296 - MIR SINE MIR -155 107 1 1056 146 0 0 chr13 43002360 43002538 -76742360 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 504 294 29 69 chr13 43002548 43002824 -76742074 + MLT1K LTR MaLR 319 583 -5 291 307 105 18 chr13 43003239 43003353 -76741545 - L2 LINE L2 -16 3256 3133 475 315 30 0 chr13 43003633 43003798 -76741100 + L2 LINE L2 3133 3302 -11 621 315 97 59 chr13 43003810 43004283 -76740615 - L3 LINE CR1 -407 1170 680 343 308 304 9 chr13 43004372 43004694 -76740204 - L3 LINE CR1 -880 697 281 185 0 0 39 chr13 43006058 43006084 -76738814 + (TAA)n Simple_repeat Simple_repeat 2 26 0 28 29 0 0 chr13 43006320 43006355 -76738543 + AT_rich Low_complexity Low_complexity 1 35 0 2171 133 0 0 chr13 43006637 43006939 -76737959 + AluSg SINE Alu 2 303 -7 401 316 51 19 chr13 43008914 43009072 -76735826 + MIR3 SINE MIR 3 165 -43 289 287 37 0 chr13 43009578 43009584 -76735314 + (CATATA)n Simple_repeat Simple_repeat 3 7 -107 248 75 0 25 chr13 43009584 43009624 -76735274 + (TATG)n Simple_repeat Simple_repeat 2 40 0 289 287 37 0 chr13 43009624 43009725 -76735173 + (CATATA)n Simple_repeat Simple_repeat 7 114 0 180 77 0 0 chr13 43010424 43010450 -76734448 + (TAGA)n Simple_repeat Simple_repeat 3 28 0 315 0 0 0 chr13 43010714 43010749 -76734149 + (CA)n Simple_repeat Simple_repeat 2 36 0 2842 105 54 13 chr13 43010974 43011421 -76733477 - MER4C LTR ERV1 0 465 1 1019 121 0 0 chr13 43011459 43011600 -76733298 + AluSg/x SINE Alu 163 303 -9 291 325 5 78 chr13 43011698 43011829 -76733069 + MIR SINE MIR 34 146 -116 2257 98 0 14 chr13 43011829 43012125 -76732773 + AluSx SINE Alu 14 305 -7 291 325 5 78 chr13 43012125 43012199 -76732699 + MIR SINE MIR 146 224 -38 1427 207 55 65 chr13 43012452 43012945 -76731953 + L1 LINE L1 2294 2781 -3365 1034 209 4 4 chr13 43012947 43013177 -76731721 + L1 LINE L1 3776 4005 -2141 3819 165 98 31 chr13 43013177 43014099 -76730799 + L1MC3 LINE L1 6803 7785 0 330 291 112 8 chr13 43014528 43014662 -76730236 - MIR SINE MIR -68 194 47 286 339 50 16 chr13 43015464 43015585 -76729313 + L3 LINE CR1 1381 1505 -72 2430 157 16 9 chr13 43016230 43016669 -76728229 - LTR47B LTR ERVL -1 442 1 2267 95 10 0 chr13 43016832 43017126 -76727772 + AluSx SINE Alu 1 297 -15 983 180 14 24 chr13 43017157 43017368 -76727530 + L1MB3 LINE L1 5958 6166 -17 22 35 0 0 chr13 43017373 43017402 -76727496 + AT_rich Low_complexity Low_complexity 1 29 0 199 265 157 20 chr13 43017867 43017969 -76726929 - L3 LINE CR1 -170 1407 1292 1143 315 139 30 chr13 43018778 43019707 -76725191 - L2 LINE L2 -1 3312 2281 555 326 39 72 chr13 43019705 43020095 -76724803 - L2 LINE L2 0 3272 2896 * 2222 134 0 20 chr13 43020319 43020663 -76724235 - MER1B DNA MER1_type 0 337 1 1670 176 30 19 chr13 43021870 43022233 -76722665 + L1MC2 LINE L1 5969 6335 -9 1008 323 132 0 chr13 43022307 43022740 -76722158 - L2 LINE L2 -1089 2225 1736 230 293 84 58 chr13 43022768 43022801 -76722097 - L2 LINE L2 -2228 1086 1055 2537 46 7 3 chr13 43022801 43023105 -76721793 + AluY SINE Alu 1 305 -6 230 293 84 58 chr13 43023105 43023262 -76721636 - L2 LINE L2 -2259 1055 891 385 291 67 22 chr13 43023727 43023861 -76721037 - MIR SINE MIR -78 184 45 24 77 0 0 chr13 43024618 43024670 -76720228 + AT_rich Low_complexity Low_complexity 1 52 0 380 360 48 36 chr13 43024684 43024934 -76719964 + L1ME LINE L1 58 310 -5809 643 298 46 36 chr13 43025455 43025689 -76719209 + L1ME LINE L1 1097 1327 -4983 2266 128 0 0 chr13 43025689 43026001 -76718897 - AluSq SINE Alu -1 312 1 643 298 46 36 chr13 43026001 43026349 -76718549 + L1ME LINE L1 1327 1729 -4581 39 22 0 0 chr13 43026374 43026420 -76718478 + AT_rich Low_complexity Low_complexity 1 46 0 424 349 121 8 chr13 43026432 43026681 -76718217 + L1ME LINE L1 1832 2108 -4202 1941 245 68 56 chr13 43026708 43027138 -76717760 + L1MEc LINE L1 1372 1795 -4420 2368 93 3 0 chr13 43027138 43027448 -76717450 + AluSp SINE Alu 3 313 0 1941 245 68 56 chr13 43027448 43028495 -76716403 + L1MEc LINE L1 1795 2941 -3274 489 336 68 32 chr13 43028946 43029189 -76715709 + L2 LINE L2 2917 3179 -134 1166 201 146 19 chr13 43029189 43029457 -76715441 + AluJo SINE Alu 1 302 0 489 336 68 32 chr13 43029457 43029582 -76715316 + L2 LINE L2 3179 3298 -15 686 270 76 30 chr13 43029609 43029913 -76714985 + L2 LINE L2 2996 3313 0 250 191 0 32 chr13 43030453 43030516 -76714382 + GA-rich Low_complexity Low_complexity 3 63 0 697 190 0 22 chr13 43030897 43031034 -76713864 - MER94 DNA DNA 0 134 1 1162 152 52 44 chr13 43031362 43031612 -76713286 + MER33 DNA MER1_type 1 252 -72 262 280 270 35 chr13 43032249 43032449 -76712449 - L2 LINE L2 -484 2830 2584 336 306 181 14 chr13 43032651 43032867 -76712031 - L1ME4a LINE L1 -268 5853 5602 22 0 0 0 chr13 43033020 43033042 -76711856 + AT_rich Low_complexity Low_complexity 1 22 0 181 301 161 21 chr13 43033053 43033146 -76711752 - L2 LINE L2 -1 3271 3166 21 36 0 0 chr13 43033260 43033288 -76711610 + AT_rich Low_complexity Low_complexity 1 28 0 1361 270 64 33 chr13 43034167 43034915 -76709983 - L2 LINE L2 0 3313 2542 539 171 86 0 chr13 43035053 43035170 -76709728 + MSTB-int LTR MaLR 1520 1646 -5 2177 159 55 15 chr13 43035182 43035584 -76709314 + MSTB LTR MaLR 9 426 0 28 61 0 0 chr13 43036307 43036356 -76708542 + AT_rich Low_complexity Low_complexity 1 49 0 198 91 0 0 chr13 43036817 43036850 -76708048 + (TTA)n Simple_repeat Simple_repeat 3 35 0 6702 68 9 2 chr13 43036850 43038013 -76706885 - L1PA7 LINE L1 -18 6136 4979 180 0 0 0 chr13 43038034 43038054 -76706844 + (C)n Simple_repeat Simple_repeat 1 20 0 1996 29 25 0 chr13 43088627 43088869 -76656029 - L1PA4 LINE L1 -1 6154 5907 6224 148 24 30 chr13 43089126 43089470 -76655428 + L1MA4 LINE L1 4145 4489 -1811 1469 138 5 5 chr13 43089470 43089687 -76655211 - AluSq SINE Alu -96 217 1 6224 148 24 30 chr13 43089687 43091509 -76653389 + L1MA4 LINE L1 4489 6294 -6 1285 195 60 4 chr13 43091536 43091803 -76653095 + L1ME1 LINE L1 5876 6157 -9 2455 136 35 0 chr13 43092168 43092537 -76652361 - MLT1B LTR MaLR 0 390 9 376 351 65 10 chr13 43094724 43095017 -76649881 + L2 LINE L2 2426 2734 -580 269 258 30 0 chr13 43095143 43095209 -76649689 + MLT1J2 LTR MaLR 67 134 -316 233 229 0 0 chr13 43095787 43095835 -76649063 + L2 LINE L2 3241 3288 -25 422 247 340 19 chr13 43095921 43096245 -76648653 + L2 LINE L2 2886 3313 0 934 66 29 0 chr13 43098345 43098482 -76646416 + (GAAA)n Simple_repeat Simple_repeat 1 141 0 298 303 13 40 chr13 43098610 43098762 -76646136 - L2 LINE L2 -1 3312 3165 269 311 33 13 chr13 43100116 43100267 -76644631 + L2 LINE L2 1952 2105 -1209 7001 41 0 0 chr13 43100344 43101167 -76643731 - L1PA4 LINE L1 0 6155 5333 1834 101 4 14 chr13 43101163 43101440 -76643458 + L1PA4 LINE L1 5069 5342 -804 * 683 157 0 0 chr13 43101553 43101661 -76643237 + L1PA4 LINE L1 5979 6086 -69 271 0 0 77 chr13 43101661 43101700 -76643198 + L1P LINE L1 5307 5342 -830 186 340 0 0 chr13 43102264 43102314 -76642584 + L2 LINE L2 3248 3297 -16 332 291 136 31 chr13 43102351 43102521 -76642377 - MIR SINE MIR -63 199 6 544 279 111 13 chr13 43106364 43106590 -76638308 - MIR SINE MIR -3 259 12 1963 157 0 10 chr13 43107431 43107736 -76637162 + AluJb SINE Alu 1 302 -10 234 200 22 0 chr13 43107866 43107911 -76636987 + L2 LINE L2 3210 3255 -17 202 211 0 0 chr13 43107878 43107916 -76636982 + MIR SINE MIR 219 256 -6 * 254 304 152 6 chr13 43107930 43108101 -76636797 - MIR SINE MIR -65 197 2 243 351 41 23 chr13 43108136 43108307 -76636591 - MIR SINE MIR -40 222 49 4579 37 0 2 chr13 43108828 43109366 -76635532 + L1PA4 LINE L1 5608 6144 -11 26 64 0 0 chr13 43109366 43109413 -76635485 + AT_rich Low_complexity Low_complexity 1 47 0 429 20 0 0 chr13 43109497 43109547 -76635351 + (TG)n Simple_repeat Simple_repeat 1 50 0 494 269 113 72 chr13 43109547 43109963 -76634935 - L1ME LINE L1 -308 5813 5381 215 30 0 30 chr13 43110175 43110208 -76634690 + (TAA)n Simple_repeat Simple_repeat 3 34 0 4839 190 55 20 chr13 43110309 43111722 -76633176 - L1MD1 LINE L1 0 6242 4760 2278 108 7 0 chr13 43111722 43112018 -76632880 - AluSx SINE Alu -14 298 1 4839 190 55 20 chr13 43112018 43112168 -76632730 - L1MD1 LINE L1 -1482 4760 4617 1398 219 138 35 chr13 43112204 43112660 -76632238 + MLT1D LTR MaLR 1 503 -2 1597 230 32 60 chr13 43112678 43113264 -76631634 - L1MDa LINE L1 -5502 1038 236 1402 167 25 16 chr13 43113276 43113521 -76631377 - L1MDa LINE L1 -6291 249 3 542 245 50 31 chr13 43114018 43114177 -76630721 + MLT1I LTR MaLR 101 262 -147 2013 207 37 86 chr13 43114215 43114785 -76630113 - MLT1F LTR MaLR 0 542 1 588 181 145 24 chr13 43115766 43115932 -76628966 - MER53 DNA DNA -3 186 1 296 188 0 118 chr13 43116313 43116398 -76628500 - MIR SINE MIR -78 184 110 915 176 6 29 chr13 43116407 43116577 -76628321 + FRAM SINE Alu 1 166 0 256 329 0 0 chr13 43118522 43118592 -76626306 + (CGTG)n Simple_repeat Simple_repeat 4 73 0 496 286 95 5 chr13 43118983 43119193 -76625705 - MIR SINE MIR 0 262 34 786 270 72 41 chr13 43119212 43119531 -76625367 + MER102b DNA MER1_type 4 332 -9 5129 101 0 25 chr13 43119986 43120737 -76624161 - L1PB1 LINE L1 0 6151 5420 703 232 85 0 chr13 43120758 43120922 -76623976 + MER45A DNA AcHobo 1 178 0 1166 216 166 38 chr13 43121584 43122006 -76622892 - MLT1D LTR MaLR -8 497 22 849 309 116 40 chr13 43122039 43122935 -76621963 - L2 LINE L2 -181 3091 2123 2112 131 0 13 chr13 43123432 43123745 -76621153 - AluSx SINE Alu -3 309 1 1067 202 10 5 chr13 43123771 43123979 -76620919 + MER3 DNA MER1_type 1 209 0 197 254 0 63 chr13 43124199 43124262 -76620636 + L2 LINE L2 3253 3311 -2 2097 136 0 0 chr13 43124262 43124556 -76620342 + AluSx SINE Alu 1 294 -18 192 153 0 136 chr13 43124702 43124761 -76620137 - L2 LINE L2 -938 2376 2326 180 348 98 36 chr13 43124923 43125147 -76619751 - L3 LINE CR1 -793 784 547 685 171 92 75 chr13 43126277 43126505 -76618393 + MER106B DNA MER1_type 5 1059 0 195 217 330 28 chr13 43126510 43126616 -76618282 + L2 LINE L2 3124 3261 -11 2366 245 62 34 chr13 43127589 43128657 -76616241 - L1ME3A LINE L1 -28 6142 5052 1139 148 6 0 chr13 43128715 43128898 -76616000 - L1MA9 LINE L1 0 6312 6129 233 297 0 0 chr13 43128900 43128974 -76615924 - L1ME3A LINE L1 -1652 4494 4421 180 340 75 19 chr13 43129188 43129347 -76615551 - L2 LINE L2 -220 3052 2885 244 262 12 48 chr13 43130963 43131047 -76613851 - MLT1K LTR MaLR -318 270 190 317 357 8 0 chr13 43131346 43131475 -76613423 + MIR SINE MIR 2 131 -131 255 61 0 0 chr13 43131477 43131510 -76613388 + (CAT)n Simple_repeat Simple_repeat 3 35 0 263 221 10 125 chr13 43132806 43132910 -76611988 - MIR3 SINE MIR -48 160 69 787 224 29 11 chr13 43132992 43133166 -76611732 - MLT1J2 LTR MaLR -8 442 266 1099 193 28 5 chr13 43133173 43133386 -76611512 + MER20 DNA MER1_type 2 219 0 438 292 245 8 chr13 43133712 43134096 -76610802 + L2 LINE L2 2249 2723 -591 639 278 96 52 chr13 43134391 43134848 -76610050 + L2 LINE L2 2837 3313 0 279 202 0 31 chr13 43135573 43135686 -76609212 + MER69 DNA AcHobo 1 166 -1060 1791 222 53 52 chr13 43135686 43136566 -76608332 + MER69 DNA AcHobo 137 2427 -99 1893 95 0 0 chr13 43136806 43137067 -76607831 - AluY SINE Alu 0 300 40 194 160 260 40 chr13 43140064 43140164 -76604734 + MIR SINE MIR 120 241 -21 350 252 19 29 chr13 43141268 43141371 -76603527 + MIR SINE MIR 100 201 -61 602 265 126 0 chr13 43141618 43141769 -76603129 + MER45A DNA AcHobo 8 177 -1 380 209 11 11 chr13 43144496 43144587 -76600311 - MLT1K LTR MaLR -3 585 495 234 185 62 15 chr13 43144844 43144909 -76599989 - MLT1K LTR MaLR -512 76 9 2318 113 0 0 chr13 43145547 43145857 -76599041 + AluSx SINE Alu 1 310 -2 2024 208 47 16 chr13 43146113 43146603 -76598295 + MLT1D LTR MaLR 1 505 0 2431 153 10 0 chr13 43146687 43147078 -76597820 - MER57A LTR ERV1 -1 402 8 394 271 31 47 chr13 43147095 43147224 -76597674 + MIR3 SINE MIR 66 192 -16 251 219 106 0 chr13 43149410 43149509 -76595389 + MIR3 SINE MIR 78 188 -20 369 0 0 0 chr13 43150668 43150709 -76594189 + (CA)n Simple_repeat Simple_repeat 1 41 0 698 283 21 13 chr13 43150755 43150992 -76593906 + MIR SINE MIR 23 261 -1 305 343 81 6 chr13 43151186 43151358 -76593540 - MIR3 SINE MIR -20 188 4 2173 129 7 0 chr13 43151421 43151731 -76593167 + AluSx SINE Alu 1 312 0 207 0 0 0 chr13 43152191 43152214 -76592684 + (A)n Simple_repeat Simple_repeat 1 23 0 2681 147 22 2 chr13 43152255 43152671 -76592227 + MSTB LTR MaLR 1 424 -2 466 200 46 23 chr13 43152717 43152847 -76592051 + L2 LINE L2 3181 3313 0 204 254 200 9 chr13 43152896 43153006 -76591892 + MIR SINE MIR 92 222 -40 2103 109 31 3 chr13 43153153 43153446 -76591452 + AluSx SINE Alu 1 301 -11 182 314 86 29 chr13 43154283 43154458 -76590440 + MIR SINE MIR 77 261 -1 1853 157 0 28 chr13 43154493 43154811 -76590087 + AluJo SINE Alu 1 309 -3 330 26 0 0 chr13 43155446 43155485 -76589413 + (TG)n Simple_repeat Simple_repeat 2 40 0 1134 52 0 8 chr13 43155866 43156000 -76588898 + AluY SINE Alu 1 133 -178 282 248 44 35 chr13 43156055 43156168 -76588730 + MIR SINE MIR 79 192 -70 368 331 110 33 chr13 43156414 43156779 -76588119 - L2 LINE L2 -8 3264 2872 1438 199 58 17 chr13 43157010 43157183 -76587715 - AluJo SINE Alu -4 308 117 366 61 0 0 chr13 43157183 43157232 -76587666 + (TG)n Simple_repeat Simple_repeat 2 50 0 1438 199 58 17 chr13 43157232 43157350 -76587548 - AluJo SINE Alu -195 117 5 2224 138 24 162 chr13 43159496 43160034 -76584864 + LTR32 LTR ERVL 7 470 -1 188 348 22 22 chr13 43160183 43160272 -76584626 - MIR SINE MIR -172 90 2 404 251 78 63 chr13 43160343 43160534 -76584364 + MIR3 SINE MIR 15 208 0 203 294 44 0 chr13 43160818 43160886 -76584012 + MIR SINE MIR 96 166 -96 478 288 169 5 chr13 43162263 43162482 -76582416 + MIR SINE MIR 3 257 -5 517 222 136 25 chr13 43162490 43162688 -76582210 - MIR SINE MIR -6 256 37 242 235 0 74 chr13 43162898 43162979 -76581919 + MLT1L LTR MaLR 1 75 -540 2163 176 13 10 chr13 43163002 43163388 -76581510 - L1MB3 LINE L1 -109 6074 5688 2547 147 71 16 chr13 43163388 43163836 -76581062 + MER44D DNA MER2_type 1 528 -77 2132 172 8 3 chr13 43163924 43164285 -76580613 + MLT1A1 LTR MaLR 1 363 -2 218 301 0 24 chr13 43165057 43165140 -76579758 + GA-rich Low_complexity Low_complexity 2 82 0 289 269 77 31 chr13 43166241 43166371 -76578527 - MIR SINE MIR -56 206 71 313 295 107 0 chr13 43166743 43166855 -76578043 - L2 LINE L2 -28 3244 3121 238 208 152 88 chr13 43168637 43168762 -76576136 + L2 LINE L2 3136 3268 -4 189 0 0 0 chr13 43168803 43168824 -76576074 + (A)n Simple_repeat Simple_repeat 1 21 0 359 309 57 11 chr13 43170326 43170501 -76574397 - MIR SINE MIR -59 203 21 249 260 0 13 chr13 43170896 43170973 -76573925 + GA-rich Low_complexity Low_complexity 2 77 0 359 157 1 28 chr13 43172018 43172090 -76572808 + L1MC2 LINE L1 5861 5931 -257 * 6508 156 43 17 chr13 43172081 43173278 -76571620 - L1MCa LINE L1 -5179 1247 20 1177 185 29 8 chr13 43173281 43173519 -76571379 + L1MB8 LINE L1 5914 6156 -22 284 252 0 19 chr13 43173528 43173631 -76571267 + GA-rich Low_complexity Low_complexity 2 102 0 194 229 0 16 chr13 43173660 43173721 -76571177 + G-rich Low_complexity Low_complexity 2 61 0 527 250 132 5 chr13 43176421 43176633 -76568265 + MIR SINE MIR 12 250 -12 1659 184 70 28 chr13 43176894 43177253 -76567645 + MLT1A2 LTR MaLR 1 374 0 205 273 0 0 chr13 43177596 43177640 -76567258 + (TATG)n Simple_repeat Simple_repeat 4 47 0 209 330 82 0 chr13 43179379 43179476 -76565422 - L2 LINE L2 0 3313 3209 1972 112 0 0 chr13 43179494 43179783 -76565115 + AluSx SINE Alu 35 323 0 585 185 9 0 chr13 43180888 43180996 -76563902 + FLAM_A SINE Alu 34 142 0 216 67 0 0 chr13 43181483 43181513 -76563385 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 897 140 0 0 chr13 43181515 43181693 -76563205 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 439 267 25 43 chr13 43181928 43182089 -76562809 + L2 LINE L2 2925 3082 -190 183 445 27 7 chr13 43182163 43182309 -76562589 + L2 LINE L2 3124 3272 0 379 71 0 0 chr13 43184119 43184175 -76560723 - L1MB2 LINE L1 -1 6170 6115 1775 168 29 0 chr13 43184176 43184491 -76560407 - L1MB2 LINE L1 -173 6010 5687 255 161 0 0 chr13 43185078 43185134 -76559764 + (CA)n Simple_repeat Simple_repeat 1 56 0 24 32 0 0 chr13 43185708 43185739 -76559159 + AT_rich Low_complexity Low_complexity 1 31 0 520 227 27 27 chr13 43187012 43187162 -76557736 + L1MC4 LINE L1 7473 7622 -420 * 1434 61 0 6 chr13 43187160 43187341 -76557557 - L1PA7 LINE L1 -142 6012 5833 1258 236 47 33 chr13 43187335 43187759 -76557139 + L1MC4 LINE L1 7613 8042 0 * 3431 50 0 0 chr13 43188754 43189173 -76555725 - L1PA8 LINE L1 0 6172 5754 533 42 0 0 chr13 43189173 43189245 -76555653 + L1P LINE L1 5270 5341 -831 294 259 110 52 chr13 43189286 43189595 -76555303 + L2 LINE L2 2348 2674 -640 1040 123 25 6 chr13 43189660 43189823 -76555075 - L1PA10 LINE L1 -12 6156 5991 360 347 54 77 chr13 43190059 43190408 -76554490 + L2 LINE L2 2923 3263 -9 214 270 56 11 chr13 43190963 43191052 -76553846 + L2 LINE L2 3138 3230 -42 334 323 89 22 chr13 43192093 43192336 -76552562 - MIR SINE MIR 0 262 8 820 250 207 25 chr13 43192377 43192959 -76551939 - LTR50 LTR ERVL -1 794 25 402 310 70 11 chr13 43193061 43193248 -76551650 - MIR SINE MIR -26 236 39 1046 224 80 32 chr13 43193273 43193612 -76551286 - MLT1C LTR MaLR 0 467 113 289 244 39 0 chr13 43193708 43193786 -76551112 - MLT1C LTR MaLR -379 88 8 1125 221 53 8 chr13 43196197 43196460 -76548438 + MLT1C LTR MaLR 193 467 0 2000 191 75 0 chr13 43197110 43197512 -76547386 - MSTB1 LTR MaLR 0 432 1 230 351 0 0 chr13 43197517 43197594 -76547304 + MER103 DNA DNA 36 112 -54 266 176 0 0 chr13 43198996 43199047 -76545851 - L2 LINE L2 0 3313 3263 262 254 15 0 chr13 43199168 43199235 -76545663 - MER91 DNA MER1_type -5 135 68 323 348 49 0 chr13 43199440 43199610 -76545288 - MIR SINE MIR -58 150 20 1099 177 10 19 chr13 43199629 43199838 -76545060 + MER3 DNA MER1_type 3 209 0 404 271 47 100 chr13 43200348 43200669 -76544229 + MER102b DNA MER1_type 35 338 -3 210 259 0 0 chr13 43200954 43201008 -76543890 + MIR SINE MIR 206 259 -3 198 327 59 30 chr13 43201400 43201501 -76543397 + L2 LINE L2 3150 3253 -19 22 0 0 0 chr13 43201664 43201686 -76543212 + AT_rich Low_complexity Low_complexity 1 22 0 294 298 69 55 chr13 43201691 43201980 -76542918 + L1ME LINE L1 5545 5837 -284 1802 174 0 20 chr13 43202086 43202384 -76542514 + AluJo SINE Alu 1 292 -20 1472 199 11 0 chr13 43202386 43202663 -76542235 - L1ME LINE L1 -529 5637 5358 * 1739 210 65 60 chr13 43202661 43203196 -76541702 + L1ME2 LINE L1 5639 6334 0 393 339 110 46 chr13 43203264 43203701 -76541197 + L2 LINE L2 2808 3272 0 342 331 34 29 chr13 43205709 43205884 -76539014 - L2 LINE L2 -173 3099 2924 908 210 0 6 chr13 43206388 43206564 -76538334 + MER5B DNA MER1_type 3 177 -1 1826 192 57 21 chr13 43206829 43207250 -76537648 - MER63B DNA MER1_type 0 436 1 210 224 0 0 chr13 43208356 43208405 -76536493 + (TG)n Simple_repeat Simple_repeat 2 50 0 3067 143 17 37 chr13 43208838 43209368 -76535530 - LTR27 LTR ERV1 -137 810 3 276 291 12 0 chr13 43209711 43209797 -76535101 - L2 LINE L2 -2 3270 3184 928 143 23 0 chr13 43211237 43211412 -76533486 + GA-rich Low_complexity Low_complexity 2 180 0 219 129 0 0 chr13 43211414 43211445 -76533453 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 200 86 86 0 chr13 43211723 43211758 -76533140 - MIR SINE MIR -55 153 116 1185 191 56 88 chr13 43212447 43212823 -76532075 - MLT2D LTR ERVL -48 366 3 466 287 50 36 chr13 43213761 43214079 -76530819 - MLT1I LTR MaLR -14 395 31 222 37 0 0 chr13 43214930 43214957 -76529941 + (A)n Simple_repeat Simple_repeat 1 27 0 974 257 62 54 chr13 43216290 43216738 -76528160 + LTR16A1 LTR ERVL 1 452 -5 409 318 18 12 chr13 43217064 43217234 -76527664 - MARNA DNA Mariner -41 545 375 399 303 107 11 chr13 43217505 43217683 -76527215 - L2 LINE L2 0 3313 3119 593 258 66 16 chr13 43218057 43218239 -76526659 - MIR SINE MIR -44 218 28 2911 119 21 5 chr13 43218289 43218716 -76526182 - MER57B LTR ERV1 0 434 1 690 286 70 39 chr13 43218892 43219249 -76525649 + L1ME4a LINE L1 5527 5894 -227 1897 108 63 4 chr13 43219668 43219936 -76524962 - AluSg SINE Alu -26 284 1 231 184 41 0 chr13 43220630 43220679 -76524219 + GA-rich Low_complexity Low_complexity 2 52 0 1640 221 8 21 chr13 43220925 43221300 -76523598 - MLT1A2 LTR MaLR -4 370 1 522 276 41 31 chr13 43222210 43222406 -76522492 + MLT1L LTR MaLR 418 615 0 643 237 19 0 chr13 43222531 43222687 -76522211 + MIR SINE MIR 33 191 -71 2403 75 14 0 chr13 43222855 43223147 -76521751 + AluSx SINE Alu 1 296 -16 397 230 158 54 chr13 43223332 43223667 -76521231 - L1ME4a LINE L1 -206 5915 5546 758 157 55 180 chr13 43224684 43224939 -76519959 - MER58A DNA MER1_type 0 224 2 337 235 0 78 chr13 43225384 43225486 -76519412 + MIR3 SINE MIR 69 162 -46 2282 169 86 21 chr13 43225811 43226297 -76518601 - MLT2B1 LTR ERVL 0 520 3 21 0 0 0 chr13 43226808 43226829 -76518069 + AT_rich Low_complexity Low_complexity 1 21 0 196 301 27 0 chr13 43226914 43226987 -76517911 + MIR SINE MIR 124 198 -64 396 238 36 0 chr13 43228058 43228142 -76516756 - HERV16 LTR ERVL -4909 87 1 667 292 70 23 chr13 43228164 43228457 -76516441 - LTR16A LTR ERVL -10 440 133 1136 334 76 34 chr13 43228696 43230307 -76514591 - HERV16 LTR ERVL -367 5287 3628 426 39 0 0 chr13 43230825 43230877 -76514021 + (TG)n Simple_repeat Simple_repeat 1 52 0 274 245 43 11 chr13 43231199 43231293 -76513605 - MER5A DNA MER1_type -84 105 9 2568 86 3 0 chr13 43231845 43232196 -76512702 - L1PA8 LINE L1 -1489 4657 4306 7211 63 16 0 chr13 43232198 43233681 -76511217 + L1PA8 LINE L1 4675 6172 0 184 330 39 50 chr13 43233830 43234009 -76510889 - MIR3 SINE MIR -2 206 30 421 257 140 47 chr13 43234560 43234577 -76510321 - MIR SINE MIR -16 246 232 462 230 18 9 chr13 43234577 43234690 -76510208 - MER81 DNA DNA 0 114 1 421 257 140 47 chr13 43234690 43234886 -76510012 - MIR SINE MIR -30 232 13 304 284 0 0 chr13 43235489 43235570 -76509328 - MIR SINE MIR -64 198 118 296 169 36 60 chr13 43236612 43236695 -76508203 - LTR67 LTR ERVL -5 552 472 312 318 9 9 chr13 43237084 43237201 -76507697 + MIR SINE MIR 19 134 -74 1018 150 0 0 chr13 43239183 43239336 -76505562 + FRAM SINE Alu 1 151 -25 209 288 19 19 chr13 43239427 43239517 -76505381 - MER5A DNA MER1_type 0 189 92 2657 48 0 0 chr13 43240172 43240481 -76504417 + AluY SINE Alu 1 309 -2 545 295 54 28 chr13 43241118 43241344 -76503554 + MIR SINE MIR 17 247 -15 409 282 176 25 chr13 43241759 43242242 -76502656 + L2 LINE L2 111 666 -2648 1757 229 35 53 chr13 43242243 43242316 -76502582 + MLT1D LTR MaLR 1 74 -431 2104 145 33 41 chr13 43242316 43242709 -76502189 + MLT1B LTR MaLR 1 390 0 1757 229 35 53 chr13 43242709 43243147 -76501751 + MLT1D LTR MaLR 74 503 -2 478 263 229 45 chr13 43243156 43243711 -76501187 + L2 LINE L2 670 1326 -1988 205 291 94 115 chr13 43243722 43243966 -76500932 + L2 LINE L2 3019 3257 -15 186 103 0 0 chr13 43243966 43243995 -76500903 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 190 290 81 16 chr13 43244255 43244317 -76500581 - L3b LINE CR1 -5 1578 1513 24 32 0 0 chr13 43244385 43244416 -76500482 + AT_rich Low_complexity Low_complexity 1 31 0 338 269 62 88 chr13 43245028 43245188 -76499710 - L2 LINE L2 0 3272 3117 299 241 99 43 chr13 43245408 43245549 -76499349 + MLT1J2 LTR MaLR 302 450 0 325 338 15 0 chr13 43245797 43245930 -76498968 - MER113 DNA MER1_type? -38 483 349 2283 151 88 103 chr13 43245931 43246454 -76498444 + MLT2B2 LTR ERVL 1 515 0 1210 294 38 21 chr13 43246455 43247013 -76497885 + L2 LINE L2 2750 3313 0 348 244 12 0 chr13 43247027 43247109 -76497789 - MER113 DNA MER1_type? -201 320 238 1340 189 55 32 chr13 43247118 43247498 -76497400 - LTR37A LTR ERV1 0 426 38 347 230 35 9 chr13 43247555 43247668 -76497230 - MER113 DNA MER1_type? -286 235 120 349 302 154 0 chr13 43247728 43247877 -76497021 - MER5A DNA MER1_type -9 180 9 206 232 71 0 chr13 43247971 43248027 -76496871 - L2 LINE L2 -567 2747 2688 814 282 70 4 chr13 43248711 43248904 -76495994 - L1ME1 LINE L1 -5 6161 5943 2256 104 14 0 chr13 43248904 43249201 -76495697 - AluSg SINE Alu -9 301 1 814 282 70 4 chr13 43249201 43249280 -76495618 - L1ME1 LINE L1 -223 5943 5871 2252 221 49 61 chr13 43249383 43250174 -76494724 - L1ME1 LINE L1 -746 5420 4640 494 277 123 5 chr13 43250398 43250593 -76494305 + MIR SINE MIR 35 252 -10 183 224 20 0 chr13 43250560 43250609 -76494289 + L2 LINE L2 3264 3313 0 * 2068 139 0 0 chr13 43250923 43251218 -76493680 + AluSx SINE Alu 1 295 -17 638 171 0 9 chr13 43251339 43251450 -76493448 - FLAM_A SINE Alu -8 134 25 632 177 44 55 chr13 43251503 43251684 -76493214 + MER53 DNA DNA 4 182 -7 * 1071 257 135 88 chr13 43251683 43252135 -76492763 + Zaphod DNA AcHobo 44 516 -3515 1289 168 5 0 chr13 43252244 43252453 -76492445 - MER2 DNA MER2_type -135 210 1 1170 186 114 45 chr13 43252453 43252899 -76491999 + Zaphod DNA AcHobo 515 991 -3040 1084 225 76 3 chr13 43252896 43253211 -76491687 + Zaphod DNA AcHobo 3595 3932 -99 * 180 291 93 46 chr13 43253976 43254127 -76490771 + L2 LINE L2 2938 3095 -177 368 270 67 32 chr13 43255351 43255546 -76489352 + MIR SINE MIR 31 229 -33 571 298 132 17 chr13 43255685 43255980 -76488918 - MER102a DNA MER1_type 0 330 2 354 258 153 0 chr13 43256149 43256273 -76488625 - MIR SINE MIR -62 200 58 519 311 110 18 chr13 43256839 43257304 -76487594 + L1MC4a LINE L1 5421 5941 -227 2188 62 66 4 chr13 43257790 43258063 -76486835 + AluY SINE Alu 1 290 -21 211 344 51 38 chr13 43258214 43258371 -76486527 + MIR SINE MIR 35 193 -69 377 240 8 33 chr13 43258422 43258543 -76486355 + MER104 DNA Tc2 1 118 -62 260 293 100 4 chr13 43259136 43259282 -76485616 - MIR SINE MIR -63 145 31 217 0 61 0 chr13 43259285 43259318 -76485580 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 425 290 124 14 chr13 43260091 43260236 -76484662 - MIR SINE MIR -96 166 6 2296 81 0 0 chr13 43260281 43260576 -76484322 + AluY SINE Alu 1 295 -16 269 321 0 45 chr13 43260707 43260819 -76484079 - L2 LINE L2 -48 3265 3159 1697 166 14 0 chr13 43260835 43261124 -76483774 + AluJb SINE Alu 1 293 -19 199 280 0 0 chr13 43261469 43261519 -76483379 - L2 LINE L2 -809 2505 2456 1029 183 22 27 chr13 43261697 43261921 -76482977 + AluJo SINE Alu 87 309 -3 528 59 0 0 chr13 43261922 43261953 -76482945 + (GGAA)n Simple_repeat Simple_repeat 1 99 0 528 59 0 0 chr13 43261953 43262021 -76482877 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 491 299 87 0 chr13 43262177 43262361 -76482537 - MIR SINE MIR -49 213 14 1906 148 0 0 chr13 43263247 43263545 -76481353 + AluJo SINE Alu 15 312 0 23 0 0 0 chr13 43263846 43263869 -76481029 + AT_rich Low_complexity Low_complexity 1 23 0 1567 181 13 13 chr13 43263869 43264179 -76480719 - AluJo SINE Alu -2 310 1 1377 166 12 0 chr13 43264341 43264594 -76480304 + L1MB3 LINE L1 5921 6176 -7 380 57 0 267 chr13 43264943 43264982 -76479916 + MADE1 DNA Mariner 1 4294967293 -83 1956 135 0 31 chr13 43264982 43265301 -76479597 - AluSq SINE Alu -4 309 1 380 57 0 267 chr13 43265301 43265366 -76479532 + MADE1 DNA Mariner -4 77 -3 1337 96 127 22 chr13 43265377 43265606 -76479292 + L1MB4 LINE L1 5928 6180 0 2385 81 0 0 chr13 43265707 43266015 -76478883 + AluSg SINE Alu 1 308 -2 252 0 0 0 chr13 43266989 43267017 -76477881 + (A)n Simple_repeat Simple_repeat 1 28 0 251 93 23 0 chr13 43267778 43267821 -76477077 + (CA)n Simple_repeat Simple_repeat 2 45 0 263 319 0 0 chr13 43267927 43267996 -76476902 + L3 LINE CR1 1508 1576 -1 23 0 0 0 chr13 43268146 43268169 -76476729 + AT_rich Low_complexity Low_complexity 1 23 0 315 237 35 79 chr13 43268282 43268396 -76476502 + MIR SINE MIR 112 220 -42 674 228 60 102 chr13 43269873 43270211 -76474687 + L1MC4a LINE L1 5521 5843 -1965 2202 95 0 0 chr13 43270211 43270506 -76474392 - AluSg SINE Alu -15 295 1 674 228 60 102 chr13 43270506 43270549 -76474349 + L1MC4a LINE L1 5843 5886 -1922 24 32 0 0 chr13 43270638 43270669 -76474229 + AT_rich Low_complexity Low_complexity 1 31 0 196 313 0 16 chr13 43270964 43271028 -76473870 + L2 LINE L2 3132 3194 -78 263 232 29 43 chr13 43271036 43271105 -76473793 + MIR SINE MIR 89 156 -106 527 268 93 22 chr13 43271110 43271244 -76473654 - MIR SINE MIR -8 254 102 1353 180 33 59 chr13 43271244 43271550 -76473348 - AluJo SINE Alu -12 300 3 527 268 93 22 chr13 43271550 43271598 -76473300 - MIR SINE MIR -160 102 59 183 129 0 0 chr13 43272198 43272229 -76472669 + (GA)n Simple_repeat Simple_repeat 1 31 0 186 367 17 0 chr13 43272342 43272402 -76472496 + MIR SINE MIR 36 96 -112 385 331 55 0 chr13 43272447 43272574 -76472324 + L2 LINE L2 3139 3272 0 421 183 54 11 chr13 43273092 43273185 -76471713 - LTR67 LTR ERVL -3 554 458 371 296 67 79 chr13 43273256 43273496 -76471402 - LTR67 LTR ERVL -318 239 3 2059 119 10 0 chr13 43273644 43273938 -76470960 + AluSx SINE Alu 1 297 -15 475 263 80 62 chr13 43274440 43274484 -76470414 + L1MC4a LINE L1 5621 5663 -2145 4281 190 47 18 chr13 43274484 43275322 -76469576 - MER21B LTR ERV1 -1 862 1 475 263 80 62 chr13 43275322 43275615 -76469283 + L1MC4a LINE L1 5663 5964 -1844 206 96 0 96 chr13 43277930 43277982 -76466916 + (CGGGG)n Simple_repeat Simple_repeat 1 47 0 251 193 53 0 chr13 43278302 43278359 -76466539 + L2 LINE L2 3213 3272 0 2100 104 0 13 chr13 43280267 43280576 -76464322 + AluSx SINE Alu 1 305 -7 346 328 40 45 chr13 43281605 43281803 -76463095 - L2 LINE L2 0 3313 3117 784 233 47 55 chr13 43281918 43282193 -76462705 + MER20B DNA MER1_type 219 491 -292 316 237 349 6 chr13 43282941 43283110 -76461788 + MIR SINE MIR 36 262 0 347 269 77 29 chr13 43283284 43283388 -76461510 + L2 LINE L2 3163 3271 -1 21 0 0 0 chr13 43284321 43284342 -76460556 + AT_rich Low_complexity Low_complexity 1 21 0 347 343 184 29 chr13 43284529 43284844 -76460054 - L3 LINE CR1 -70 1507 1144 1203 81 0 6 chr13 43284877 43285038 -76459860 + AluSp SINE Alu 145 304 -9 2024 100 0 7 chr13 43285038 43285329 -76459569 + AluSg SINE Alu 1 289 -21 502 311 16 38 chr13 43285357 43285540 -76459358 - L3 LINE CR1 -508 1069 891 340 279 115 57 chr13 43285524 43285768 -76459130 + L2 LINE L2 3031 3288 -25 * 432 0 0 0 chr13 43285768 43285816 -76459082 + (TGGA)n Simple_repeat Simple_repeat 2 49 0 2427 55 7 3 chr13 43285935 43286245 -76458653 + AluY SINE Alu 1 311 0 256 289 198 37 chr13 43286339 43286526 -76458372 - L3 LINE CR1 -803 774 558 * 375 332 89 61 chr13 43286524 43286916 -76457982 - L2 LINE L2 0 3272 2870 321 294 18 28 chr13 43286997 43287106 -76457792 - L3 LINE CR1 -1141 436 329 2164 101 0 16 chr13 43287323 43287629 -76457269 - AluSc SINE Alu -8 301 1 307 318 63 24 chr13 43289428 43289554 -76455344 + MIR SINE MIR 22 152 -110 1971 114 17 0 chr13 43290169 43290459 -76454439 - AluSx SINE Alu -15 297 3 353 266 0 0 chr13 43291087 43291166 -76453732 + MER117 DNA MER1_type 74 152 -45 366 198 75 19 chr13 43291775 43291881 -76453017 + L1ME4a LINE L1 6009 6120 -1 255 287 0 0 chr13 43292003 43292170 -76452728 + (TG)n Simple_repeat Simple_repeat 2 168 0 572 258 83 68 chr13 43293003 43293255 -76451643 + MIR SINE MIR 7 262 0 336 307 121 30 chr13 43293612 43293843 -76451055 - MIR SINE MIR -8 254 3 1214 307 120 53 chr13 43295179 43295410 -76449488 - L2 LINE L2 -1 3312 3098 731 202 92 6 chr13 43295410 43295583 -76449315 + MER5A DNA MER1_type 2 189 0 1214 307 120 53 chr13 43295583 43295702 -76449196 - L2 LINE L2 -215 3098 2988 2050 93 0 17 chr13 43295702 43295992 -76448906 + AluSc SINE Alu 12 296 -13 1214 307 120 53 chr13 43295992 43297133 -76447765 - L2 LINE L2 -325 2988 1672 2121 80 45 3 chr13 43297912 43298199 -76446699 - AluSc SINE Alu -8 301 3 328 284 81 21 chr13 43298404 43298565 -76446333 - MIR SINE MIR -46 216 45 371 308 136 5 chr13 43298623 43298837 -76446061 - MIR SINE MIR -3 259 18 2460 56 0 0 chr13 43299101 43299403 -76445495 + AluY SINE Alu 1 302 -9 184 194 0 0 chr13 43299997 43300028 -76444870 + L2 LINE L2 3217 3247 -25 278 118 176 81 chr13 43303285 43303421 -76441477 + MER112 DNA MER1_type 35 183 -77 932 170 53 0 chr13 43304715 43304886 -76440012 - MER58A DNA MER1_type -1 223 44 1851 138 0 14 chr13 43304887 43305023 -76439875 + AluSx SINE Alu 1 137 -175 2043 123 7 0 chr13 43305023 43305323 -76439575 + AluSq SINE Alu 1 302 -11 1851 138 0 14 chr13 43305323 43305482 -76439416 + AluSx SINE Alu 137 292 -20 557 173 28 6 chr13 43305482 43305595 -76439303 + MER5A DNA MER1_type 59 185 -4 558 206 290 40 chr13 43305926 43306174 -76438724 - L2 LINE L2 0 3313 3004 359 253 95 32 chr13 43306233 43306391 -76438507 - MLT1J2 LTR MaLR -1 449 282 297 154 39 19 chr13 43307801 43307905 -76436993 + (TCTCTG)n Simple_repeat Simple_repeat 2 107 0 209 277 0 31 chr13 43309056 43309121 -76435777 + CT-rich Low_complexity Low_complexity 3 65 0 255 293 86 17 chr13 43309138 43309254 -76435644 - MIR SINE MIR 0 262 139 345 102 0 0 chr13 43309289 43309348 -76435550 + (CA)n Simple_repeat Simple_repeat 1 59 0 2699 192 31 13 chr13 43310207 43310748 -76434150 + L1MB3 LINE L1 5631 6181 -2 253 279 94 74 chr13 43310531 43310775 -76434123 + L1MA6 LINE L1 5949 6197 -103 845 245 91 65 chr13 43310886 43311258 -76433640 + L2 LINE L2 2930 3311 -2 2202 124 0 3 chr13 43311949 43312247 -76432651 + AluSx SINE Alu 1 297 -15 2149 136 0 7 chr13 43312358 43312667 -76432231 - AluSx SINE Alu -5 307 1 713 292 11 31 chr13 43312809 43313069 -76431829 - MER112 DNA MER1_type 0 260 6 213 297 0 55 chr13 43313124 43313215 -76431683 - L2 LINE L2 -1 3271 3186 306 220 40 80 chr13 43313221 43313371 -76431527 - LTR33 LTR ERVL -7 514 371 342 220 142 21 chr13 43313523 43313664 -76431234 - LTR33 LTR ERVL -356 165 8 187 321 20 59 chr13 43314731 43314997 -76429901 - L3 LINE CR1 -381 1196 901 2162 123 0 3 chr13 43315077 43315370 -76429528 - AluSx SINE Alu -20 292 1 562 191 15 0 chr13 43315589 43315720 -76429178 + GA-rich Low_complexity Low_complexity 1 133 0 186 286 88 11 chr13 43316379 43316470 -76428428 - L2 LINE L2 0 3272 3175 354 248 48 0 chr13 43316965 43317070 -76427828 - MIR SINE MIR -66 196 87 4617 135 36 28 chr13 43317171 43318540 -76426358 + pTR5 LTR ERV1 743 2438 0 1957 125 14 10 chr13 43318843 43319140 -76425758 + AluSq SINE Alu 1 298 -15 319 248 29 19 chr13 43319148 43319253 -76425645 - MIR3 SINE MIR -22 186 81 214 229 266 0 chr13 43319658 43319767 -76425131 - MIR SINE MIR -70 192 55 2305 176 105 23 chr13 43320588 43321023 -76423875 + MLT2B2 LTR ERVL 1 480 -35 939 80 23 17 chr13 43321023 43321198 -76423700 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 2305 176 105 23 chr13 43321198 43321238 -76423660 + MLT2B2 LTR ERVL 480 515 0 356 182 0 0 chr13 43322069 43322135 -76422763 + AluJ/FRAM SINE Alu 227 292 -10 369 275 58 7 chr13 43322301 43322439 -76422459 - L1ME4a LINE L1 -21 6100 5956 319 338 39 0 chr13 43322584 43322738 -76422160 - L1ME4a LINE L1 -391 5730 5571 1584 188 90 37 chr13 43323278 43323735 -76421163 + Charlie4a DNA MER1_type 26 506 -2 261 0 0 0 chr13 43323856 43323885 -76421013 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 1723 141 54 30 chr13 43323919 43324216 -76420682 + AluJo SINE Alu 1 304 -8 2059 143 0 0 chr13 43325027 43325320 -76419578 - AluSx SINE Alu -19 293 1 206 156 22 0 chr13 43325522 43325567 -76419331 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 234 257 83 46 chr13 43325624 43325733 -76419165 + MIR3 SINE MIR 47 159 -49 292 320 29 34 chr13 43326968 43327143 -76417755 - MLT1J2 LTR MaLR -34 416 243 285 256 163 3 chr13 43327147 43327272 -76417626 - MLT1J2 LTR MaLR -220 226 76 1969 155 7 0 chr13 43328504 43328808 -76416090 - AluJb SINE Alu -5 307 2 401 36 18 0 chr13 43328843 43328898 -76416000 + (GA)n Simple_repeat Simple_repeat 1 56 0 365 266 208 24 chr13 43329859 43330066 -76414832 + MIR SINE MIR 7 251 -11 296 234 20 164 chr13 43330317 43330518 -76414380 - MER102b DNA MER1_type -7 334 163 1073 244 50 45 chr13 43331021 43331402 -76413496 - MLT1J1 LTR MaLR -61 385 3 645 235 135 41 chr13 43332740 43333048 -76411850 - MLT1J1 LTR MaLR -80 366 29 408 258 11 0 chr13 43333048 43333141 -76411757 - MER81 DNA DNA -3 111 18 225 253 242 21 chr13 43333581 43333676 -76411222 + L2 LINE L2 3156 3271 -1 502 262 94 20 chr13 43333865 43334102 -76410796 + Charlie8 DNA MER1_type 17 285 -2132 361 215 116 25 chr13 43334772 43334893 -76410005 - MIR SINE MIR -80 182 51 186 43 0 0 chr13 43334938 43334961 -76409937 + (CA)n Simple_repeat Simple_repeat 1 23 0 231 323 65 13 chr13 43335028 43335183 -76409715 - MIR3 SINE MIR -26 182 20 227 274 60 24 chr13 43336865 43336949 -76407949 - L3 LINE CR1 -214 1363 1277 249 246 197 16 chr13 43336976 43337098 -76407800 - MIR3 SINE MIR -3 205 62 21 82 0 0 chr13 43338985 43339034 -76405864 + GC_rich Low_complexity Low_complexity 1 49 0 200 329 0 0 chr13 43340708 43340781 -76404117 + C-rich Low_complexity Low_complexity 1 73 0 347 259 15 74 chr13 43342218 43342353 -76402545 - MARNA DNA Mariner -244 342 216 26 30 0 0 chr13 43342423 43342456 -76402442 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 43342754 43342775 -76402123 + AT_rich Low_complexity Low_complexity 1 21 0 368 309 80 6 chr13 43342913 43343075 -76401823 - L1MC/D LINE L1 -2028 5780 5607 290 230 35 11 chr13 43343865 43343952 -76400946 - MER53 DNA DNA 0 189 101 2088 118 10 38 chr13 43344076 43344390 -76400508 + AluSx SINE Alu 4 308 -4 1419 258 156 35 chr13 43344394 43345075 -76399823 + HAL1 LINE L1 1189 1951 -556 564 256 110 23 chr13 43345249 43345550 -76399348 + HAL1 LINE L1 2181 2507 0 4872 214 118 73 chr13 43345593 43346410 -76398488 + L1ME1 LINE L1 390 1169 -5227 2047 113 32 26 chr13 43346410 43346720 -76398178 + AluSx SINE Alu 1 312 0 4872 214 118 73 chr13 43346720 43347343 -76397555 + L1ME1 LINE L1 1169 1763 -4633 642 205 0 33 chr13 43347343 43347465 -76397433 + FLAM_A SINE Alu 1 118 -15 4872 214 118 73 chr13 43347465 43347780 -76397118 + L1ME1 LINE L1 1763 2062 -4334 2275 112 26 0 chr13 43347780 43348084 -76396814 + AluSx SINE Alu 1 312 0 4872 214 118 73 chr13 43348084 43348368 -76396530 + L1ME1 LINE L1 2062 2523 -3873 1199 243 50 17 chr13 43348382 43348909 -76395989 + L1ME1 LINE L1 2853 3777 -2438 3238 207 75 28 chr13 43348924 43348987 -76395911 + L1ME1 LINE L1 4834 4893 -1342 333 0 0 0 chr13 43348987 43349024 -76395874 + (CA)n Simple_repeat Simple_repeat 2 38 0 3238 207 75 28 chr13 43349024 43350224 -76394674 + L1ME1 LINE L1 4893 6173 -62 895 210 27 0 chr13 43350224 43350410 -76394488 + L1PA16 LINE L1 5959 6149 -17 3238 207 75 28 chr13 43350410 43350477 -76394421 + L1ME1 LINE L1 6173 6235 0 668 169 8 0 chr13 43350514 43350644 -76394254 + GA-rich Low_complexity Low_complexity 2 132 0 1069 151 84 9 chr13 43350688 43350913 -76393985 - L1MB2 LINE L1 -2 6169 5928 925 125 0 22 chr13 43350918 43351054 -76393844 - FLAM_C SINE Alu 0 133 1 186 43 0 0 chr13 43351599 43351622 -76393276 + (T)n Simple_repeat Simple_repeat 1 23 0 286 121 318 0 chr13 43351622 43351688 -76393210 - MER31B LTR ERV1 -29 437 351 261 340 60 0 chr13 43352475 43352575 -76392323 - MIR3 SINE MIR -15 193 88 216 0 0 0 chr13 43352663 43352687 -76392211 + (TG)n Simple_repeat Simple_repeat 2 25 0 183 315 27 0 chr13 43356051 43356124 -76388774 - MIR SINE MIR -67 195 121 248 244 13 39 chr13 43357293 43357371 -76387527 - MIR SINE MIR -150 112 37 570 265 24 6 chr13 43358388 43358558 -76386340 - MIR SINE MIR -7 255 83 21 0 0 0 chr13 43358668 43358689 -76386209 + AT_rich Low_complexity Low_complexity 1 21 0 1043 274 56 11 chr13 43358689 43359046 -76385852 - L2 LINE L2 -8 3305 2933 734 145 24 40 chr13 43359813 43359937 -76384961 - LTR12 LTR ERV1 -234 480 359 229 236 28 28 chr13 43359937 43360009 -76384889 - LTR30 LTR ERV1 -98 624 553 2057 58 3 126 chr13 43360010 43360335 -76384563 - LTR12 LTR ERV1 -429 285 1 611 247 161 38 chr13 43360374 43360771 -76384127 + HAL1 LINE L1 910 1355 -1152 189 0 0 0 chr13 43361386 43361407 -76383491 + (A)n Simple_repeat Simple_repeat 1 21 0 262 223 85 90 chr13 43361492 43361680 -76383218 + Tigger1 DNA MER2_type 815 1001 -1417 6933 158 109 62 chr13 43362169 43363845 -76381053 + MER52A LTR ERV1 1 1755 0 244 313 124 51 chr13 43364837 43365054 -76379844 - MIR SINE MIR -10 252 20 187 189 27 0 chr13 43365065 43365102 -76379796 - L2 LINE L2 -15 3298 3261 1518 168 43 13 chr13 43367633 43367936 -76376962 + MLT1F LTR MaLR 229 540 -2 484 234 139 19 chr13 43369191 43369349 -76375549 - MER5B DNA MER1_type 0 178 2 2282 104 0 0 chr13 43369470 43369786 -76375112 + AluSq SINE Alu 1 316 0 191 172 86 52 chr13 43370207 43370265 -76374633 - MER5A DNA MER1_type -5 184 125 1969 171 0 3 chr13 43370266 43370570 -76374328 + AluJb SINE Alu 1 303 -9 208 340 0 0 chr13 43370574 43370627 -76374271 + MER5A DNA MER1_type 65 117 -72 2291 108 3 0 chr13 43370660 43370967 -76373931 + AluSx SINE Alu 1 308 -4 3000 133 21 11 chr13 43370977 43371770 -76373128 + L1PB3 LINE L1 4943 5743 -411 237 65 0 0 chr13 43371771 43371802 -76373096 + (CA)n Simple_repeat Simple_repeat 2 32 0 2313 115 6 3 chr13 43371817 43372155 -76372743 + L1PB3 LINE L1 5807 6145 -9 409 217 373 6 chr13 43372175 43372336 -76372562 - MIR SINE MIR -8 254 35 22 70 0 0 chr13 43374999 43375042 -76369856 + AT_rich Low_complexity Low_complexity 1 43 0 1477 150 113 13 chr13 43375560 43375990 -76368908 + MER44D DNA MER2_type 1 569 -36 209 130 65 43 chr13 43376328 43376374 -76368524 - L2 LINE L2 0 3272 3226 1112 174 57 28 chr13 43376408 43376620 -76368278 + AluJb SINE Alu 20 237 -75 911 158 45 50 chr13 43376728 43376930 -76367968 - THE1B LTR MaLR 0 364 164 36 23 0 0 chr13 43376976 43377019 -76367879 + AT_rich Low_complexity Low_complexity 1 43 0 1964 127 0 0 chr13 43377068 43377344 -76367554 + AluJb SINE Alu 1 276 -36 194 0 39 0 chr13 43377354 43377380 -76367518 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chr13 43377461 43377482 -76367416 + (TG)n Simple_repeat Simple_repeat 2 22 0 459 258 37 18 chr13 43378491 43378654 -76366244 + GA-rich Low_complexity Low_complexity 3 168 0 313 243 72 83 chr13 43379142 43379516 -76365382 + L1M4 LINE L1 2931 3300 -2846 262 229 0 82 chr13 43379571 43379693 -76365205 + L1M4 LINE L1 3428 3539 -2607 22 0 0 0 chr13 43380158 43380180 -76364718 + AT_rich Low_complexity Low_complexity 1 22 0 211 341 67 61 chr13 43380180 43380344 -76364554 + L2 LINE L2 2913 3077 -195 2401 76 0 3 chr13 43380364 43380666 -76364232 - AluSg SINE Alu -9 301 1 180 68 45 23 chr13 43380770 43380814 -76364084 + (TAA)n Simple_repeat Simple_repeat 2 46 0 557 267 80 37 chr13 43381044 43381231 -76363667 - MIR SINE MIR -48 214 20 348 152 0 0 chr13 43381620 43381686 -76363212 + (TG)n Simple_repeat Simple_repeat 2 67 0 1379 81 99 14 chr13 43381955 43382166 -76362732 - MER30 DNA MER1_type 0 230 2 398 293 31 63 chr13 43383713 43384031 -76360867 - L2 LINE L2 -1154 2160 1853 226 258 32 16 chr13 43384287 43384349 -76360549 - L2 LINE L2 -1 3271 3209 21 57 0 0 chr13 43384772 43384807 -76360091 + AT_rich Low_complexity Low_complexity 1 35 0 358 262 59 104 chr13 43384857 43384978 -76359920 - MIR SINE MIR -3 259 127 1975 126 0 14 chr13 43384978 43385283 -76359615 + AluSx SINE Alu 1 301 0 358 262 59 104 chr13 43385283 43385392 -76359506 - MIR SINE MIR -135 127 15 346 321 33 10 chr13 43385572 43385749 -76359149 - MIR SINE MIR -1 261 5 2298 52 16 39 chr13 43386105 43386413 -76358485 + AluY SINE Alu 1 301 -10 264 322 92 30 chr13 43387601 43387794 -76357104 + MIR SINE MIR 41 254 -8 387 259 59 28 chr13 43388942 43389197 -76355701 + L1ME3A LINE L1 2202 2464 -3682 569 286 102 34 chr13 43389250 43389691 -76355207 + L1ME3A LINE L1 2558 3028 -3118 273 254 70 75 chr13 43389864 43389939 -76354959 + L1ME3A LINE L1 3621 3695 -2451 2439 92 0 6 chr13 43389939 43390253 -76354645 + AluSx SINE Alu 1 312 0 273 254 70 75 chr13 43390253 43390405 -76354493 + L1ME3A LINE L1 3695 3847 -2299 2080 146 0 3 chr13 43390497 43390798 -76354100 + AluSx SINE Alu 1 300 -12 834 256 200 32 chr13 43390952 43391064 -76353834 + L1ME3A LINE L1 4006 4098 -2048 1152 169 83 51 chr13 43391064 43391377 -76353521 + MER33 DNA MER1_type 1 323 -1 834 256 200 32 chr13 43391377 43392397 -76352501 + L1ME3A LINE L1 4098 5329 -817 851 159 0 28 chr13 43392397 43392542 -76352356 + FLAM_C SINE Alu 1 141 -2 1038 212 38 38 chr13 43392559 43392904 -76351994 + L1ME3A LINE L1 5318 5662 -508 923 273 90 12 chr13 43392910 43393320 -76351578 + L1ME3A LINE L1 5716 6157 -13 364 256 23 87 chr13 43393324 43393469 -76351429 + L1ME3A LINE L1 4981 5134 -1012 2279 84 3 24 chr13 43393469 43393767 -76351131 + AluSp SINE Alu 1 292 -21 364 256 23 87 chr13 43393767 43393789 -76351109 + L1ME3A LINE L1 5134 5156 -990 210 71 0 0 chr13 43393789 43393817 -76351081 + (TA)n Simple_repeat Simple_repeat 2 29 0 364 256 23 87 chr13 43393817 43393867 -76351031 + L1ME3A LINE L1 5156 5185 -961 1162 122 0 6 chr13 43393868 43394032 -76350866 + AluSg/x SINE Alu 132 294 -18 2486 74 0 3 chr13 43394125 43394435 -76350463 + AluY SINE Alu 1 309 -2 616 304 96 26 chr13 43394438 43394962 -76349936 + L1ME3A LINE L1 5255 5855 -315 2067 131 67 3 chr13 43394962 43395306 -76349592 - MER47A DNA MER2_type 0 366 1 616 304 96 26 chr13 43395306 43395411 -76349487 + L1ME3A LINE L1 5855 5951 -219 3452 236 83 59 chr13 43395867 43396802 -76348096 + L1MB5 LINE L1 2 913 -5733 1743 174 0 64 chr13 43396802 43396947 -76347951 + AluJo SINE Alu 1 154 -158 2427 103 0 0 chr13 43396947 43397259 -76347639 + AluSx SINE Alu 1 312 0 1743 174 0 64 chr13 43397259 43397441 -76347457 + AluJo SINE Alu 154 307 -5 3452 236 83 59 chr13 43397441 43398436 -76346462 + L1MB5 LINE L1 913 2158 -4488 3591 173 77 40 chr13 43398520 43399125 -76345773 + L1MB5 LINE L1 5295 5876 -796 1267 170 112 54 chr13 43399125 43399259 -76345639 + AluJo SINE Alu 1 126 -186 2336 102 0 6 chr13 43399259 43399574 -76345324 + AluSq SINE Alu 1 313 0 1267 170 112 54 chr13 43399574 43399715 -76345183 + AluJo SINE Alu 126 292 -20 3591 173 77 40 chr13 43399715 43400416 -76344482 + L1MB5 LINE L1 5876 6671 -1 401 381 42 32 chr13 43400472 43400879 -76344019 + L2 LINE L2 2456 2866 -448 1143 178 5 5 chr13 43400985 43401182 -76343716 + AluJb SINE Alu 112 308 -4 34 24 0 0 chr13 43402244 43402285 -76342613 + AT_rich Low_complexity Low_complexity 1 41 0 2382 93 0 3 chr13 43402663 43402975 -76341923 + AluSq SINE Alu 1 311 -2 2034 128 0 3 chr13 43403551 43403833 -76341065 - AluJo SINE Alu -20 292 12 613 249 26 5 chr13 43405284 43405473 -76339425 - MER105 DNA DNA -9 195 3 516 180 85 138 chr13 43405479 43405668 -76339230 - MIR SINE MIR -82 180 2 30 27 0 0 chr13 43406730 43406767 -76338131 + AT_rich Low_complexity Low_complexity 1 37 0 1960 131 35 0 chr13 43407191 43407481 -76337417 + AluJb SINE Alu 5 304 -8 723 186 8 0 chr13 43408003 43408127 -76336771 + FLAM_C SINE Alu 1 125 -8 1573 179 39 4 chr13 43408140 43408419 -76336479 + AluJb SINE Alu 5 293 -19 265 333 28 9 chr13 43408595 43408703 -76336195 - L2 LINE L2 -5 3308 3199 710 235 150 15 chr13 43408757 43408957 -76335941 - MIR SINE MIR -33 229 3 1962 104 46 3 chr13 43409180 43409487 -76335411 + L1PA11 LINE L1 5834 6153 -21 184 321 89 9 chr13 43409596 43409708 -76335190 - L2 LINE L2 -641 2673 2553 802 298 42 39 chr13 43411354 43411710 -76333188 + L2 LINE L2 2604 2960 -354 579 51 0 226 chr13 43412139 43412213 -76332685 + L1MB3 LINE L1 6066 6097 -86 2290 68 0 4 chr13 43412213 43412494 -76332404 + AluSx SINE Alu 1 280 -32 579 51 0 226 chr13 43412494 43412556 -76332342 + L1MB3 LINE L1 6097 6171 -12 589 236 168 82 chr13 43412825 43412959 -76331939 + L1ME4a LINE L1 5469 5590 -531 2146 91 10 36 chr13 43412959 43413266 -76331632 + AluSp SINE Alu 2 300 -13 589 236 168 82 chr13 43413266 43413443 -76331455 + L1ME4a LINE L1 5590 5750 -371 226 0 0 0 chr13 43413443 43413468 -76331430 + (TTTTG)n Simple_repeat Simple_repeat 3 115 0 1867 135 11 11 chr13 43413468 43413751 -76331147 - AluSx SINE Alu -1 307 1 589 236 168 82 chr13 43413751 43413852 -76331046 + L1ME4a LINE L1 5749 5920 -201 1838 134 21 14 chr13 43413868 43414159 -76330739 + AluJb SINE Alu 9 301 -11 288 0 0 0 chr13 43414476 43414508 -76330390 + (CA)n Simple_repeat Simple_repeat 2 33 0 426 340 93 50 chr13 43414830 43415014 -76329884 + L2 LINE L2 2149 2324 -948 2584 58 0 0 chr13 43415014 43415325 -76329573 - AluY SINE Alu 0 311 1 426 340 93 50 chr13 43415325 43415514 -76329384 + L2 LINE L2 2324 2503 -769 2335 79 24 0 chr13 43415514 43415804 -76329094 - AluSc SINE Alu -12 297 1 426 340 93 50 chr13 43415804 43416107 -76328791 + L2 LINE L2 2503 3186 -86 272 283 93 66 chr13 43416987 43417365 -76327533 + L1MC4a LINE L1 4885 5272 -874 1788 258 40 32 chr13 43417383 43417434 -76327464 + L1MC4a LINE L1 5331 5380 -2428 2037 155 0 0 chr13 43417434 43417743 -76327155 + AluSx SINE Alu 1 309 -3 1788 258 40 32 chr13 43417743 43418284 -76326614 + L1MC4a LINE L1 5380 5928 -1880 1998 138 14 0 chr13 43418302 43418593 -76326305 - AluSx SINE Alu -17 295 1 243 0 0 0 chr13 43420190 43420217 -76324681 + (CA)n Simple_repeat Simple_repeat 2 28 0 937 143 0 0 chr13 43420419 43420552 -76324346 + AluSq/x SINE Alu 1 133 -180 198 103 0 0 chr13 43420582 43420611 -76324287 + (TA)n Simple_repeat Simple_repeat 2 30 0 261 111 0 0 chr13 43420613 43420658 -76324240 + LTR66 LTR ERVL 394 438 -172 288 170 0 0 chr13 43420661 43420714 -76324184 + (TA)n Simple_repeat Simple_repeat 2 54 0 1730 150 37 3 chr13 43420714 43421008 -76323890 - AluJb SINE Alu -8 304 1 262 282 76 53 chr13 43421513 43421644 -76323254 + Charlie7 DNA MER1_type 59 192 -2420 811 335 180 38 chr13 43422349 43423542 -76321356 - L2 LINE L2 -405 2909 1547 185 263 0 0 chr13 43423756 43423794 -76321104 + MIR SINE MIR 217 254 -8 * 668 240 106 6 chr13 43423760 43423939 -76320959 - MIR SINE MIR -35 227 31 627 315 152 6 chr13 43424770 43425390 -76319508 - L2 LINE L2 -15 3298 2543 3022 211 94 8 chr13 43425406 43426500 -76318398 + L1MC2 LINE L1 4846 6028 -316 304 330 139 15 chr13 43426503 43426776 -76318122 - L2 LINE L2 -1392 1922 1616 6268 214 99 87 chr13 43427103 43427399 -76317499 + L1MCb LINE L1 19 310 -6254 1998 119 37 7 chr13 43427399 43427693 -76317205 - AluSq SINE Alu -10 303 1 6268 214 99 87 chr13 43427693 43428175 -76316723 + L1MCb LINE L1 310 785 -5779 1738 156 3 10 chr13 43428175 43428463 -76316435 + AluJo SINE Alu 16 301 -11 6268 214 99 87 chr13 43428463 43428674 -76316224 + L1MCb LINE L1 785 992 -5572 1615 183 3 7 chr13 43428674 43428987 -76315911 + AluJb SINE Alu 1 312 0 6268 214 99 87 chr13 43428987 43429444 -76315454 + L1MCb LINE L1 992 1442 -5122 277 191 176 0 chr13 43429444 43429512 -76315386 - Tigger5 DNA MER2_type 0 2323 2244 * 460 140 514 0 chr13 43429509 43429616 -76315282 - Tigger5 DNA MER2_type -2129 194 33 * 6268 214 99 87 chr13 43429512 43432563 -76312335 + L1MCb LINE L1 1442 4682 -1882 2013 119 14 3 chr13 43432781 43433076 -76311822 + AluSq SINE Alu 1 298 -15 187 254 0 56 chr13 43434431 43434502 -76310396 - L2 LINE L2 -286 2986 2920 1063 346 103 17 chr13 43434608 43435366 -76309532 - L2 LINE L2 -542 2772 1950 707 139 37 19 chr13 43435690 43435798 -76309100 - AluJb SINE Alu -186 126 17 22 0 0 0 chr13 43435871 43435893 -76309005 + AT_rich Low_complexity Low_complexity 1 22 0 258 298 61 75 chr13 43436181 43436356 -76308542 + MIR SINE MIR 16 189 -66 2832 249 123 55 chr13 43436586 43438396 -76306502 + HAL1 LINE L1 23 2054 -453 253 217 0 0 chr13 43438392 43438438 -76306460 + HAL1 LINE L1 735 780 -1727 * 28 0 0 0 chr13 43438446 43438474 -76306424 + AT_rich Low_complexity Low_complexity 1 28 0 804 176 0 0 chr13 43438474 43438593 -76306305 - FLAM_C SINE Alu -24 119 1 533 198 17 113 chr13 43438607 43438784 -76306114 + HAL1 LINE L1 797 956 -1551 715 282 74 9 chr13 43439058 43439274 -76305624 - MIR SINE MIR -30 232 3 532 246 59 27 chr13 43439282 43439469 -76305429 + HAL1 LINE L1 2310 2502 -5 192 289 31 72 chr13 43439515 43439612 -76305286 - L3 LINE CR1 -246 1331 1239 276 335 81 49 chr13 43439839 43440024 -76304874 - L2 LINE L2 -94 3178 2988 2129 132 0 3 chr13 43440145 43440448 -76304450 - AluJb SINE Alu -10 302 1 266 282 77 13 chr13 43441076 43441154 -76303744 - L2 LINE L2 -90 3182 3100 23 0 0 0 chr13 43441268 43441291 -76303607 + AT_rich Low_complexity Low_complexity 1 23 0 234 150 0 0 chr13 43444501 43444541 -76300357 + (TTG)n Simple_repeat Simple_repeat 1 40 0 207 297 0 0 chr13 43445314 43445378 -76299520 + (TGG)n Simple_repeat Simple_repeat 2 65 0 23 0 0 0 chr13 43446513 43446536 -76298362 + GC_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr13 43446659 43446717 -76298181 + GC_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr13 43446779 43446802 -76298096 + GC_rich Low_complexity Low_complexity 1 23 0 200 272 0 39 chr13 43447281 43447384 -76297514 + G-rich Low_complexity Low_complexity 4 102 0 321 26 0 0 chr13 43448973 43449011 -76295887 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 216 0 0 0 chr13 43449421 43449445 -76295453 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2401 91 0 0 chr13 43449842 43450150 -76294748 + AluY SINE Alu 1 308 -3 2242 103 10 0 chr13 43450466 43450767 -76294131 - AluSx SINE Alu -8 304 1 1897 115 0 4 chr13 43451120 43451389 -76293509 + AluSx SINE Alu 34 301 -11 2738 29 0 0 chr13 43451394 43451701 -76293197 + AluY SINE Alu 1 307 -4 2428 84 0 6 chr13 43451775 43452086 -76292812 + AluSp SINE Alu 2 310 -3 342 247 134 0 chr13 43452661 43452758 -76292140 - MIR SINE MIR -65 197 88 24 0 0 0 chr13 43453124 43453148 -76291750 + AT_rich Low_complexity Low_complexity 1 24 0 514 332 78 5 chr13 43453185 43453390 -76291508 - MIR SINE MIR -5 257 38 25 51 0 0 chr13 43453828 43453867 -76291031 + AT_rich Low_complexity Low_complexity 1 39 0 1857 139 0 43 chr13 43453960 43454263 -76290635 + AluJb SINE Alu 1 290 -22 533 213 56 0 chr13 43455753 43455861 -76289037 + MLT1D LTR MaLR 3 116 -389 2022 118 0 0 chr13 43455861 43456133 -76288765 - AluSg SINE Alu -7 303 32 2171 123 0 0 chr13 43456634 43456926 -76287972 + AluSx SINE Alu 1 292 -20 696 203 0 0 chr13 43457016 43457134 -76287764 + FLAM_C SINE Alu 1 118 -15 3409 124 81 48 chr13 43457135 43457725 -76287173 - MER4B LTR ERV1 0 610 1 1878 166 13 3 chr13 43457734 43458041 -76286857 - AluSx SINE Alu -2 310 1 216 135 0 0 chr13 43458058 43458095 -76286803 + (TA)n Simple_repeat Simple_repeat 1 37 0 1635 171 92 43 chr13 43458387 43458714 -76286184 + MER61A LTR ERV1 1 343 0 198 0 0 0 chr13 43458972 43458994 -76285904 + (T)n Simple_repeat Simple_repeat 1 22 0 195 100 0 0 chr13 43459014 43459044 -76285854 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 32 0 0 0 chr13 43459363 43459395 -76285503 + AT_rich Low_complexity Low_complexity 1 32 0 1691 135 52 0 chr13 43460337 43460604 -76284294 - AluJb SINE Alu -31 281 1 2437 74 0 0 chr13 43460612 43460921 -76283977 - AluY SINE Alu -1 310 2 1406 137 26 9 chr13 43460940 43461196 -76283702 - AluSx SINE Alu 0 311 52 228 288 15 0 chr13 43461343 43461409 -76283489 + MER52A LTR ERV1 1 67 -1688 206 141 0 94 chr13 43461424 43461488 -76283410 + (CCCCCA)n Simple_repeat Simple_repeat 3 60 0 3785 212 56 71 chr13 43461660 43462838 -76282060 + MER52A LTR ERV1 56 511 -125 366 203 0 0 chr13 43462810 43462884 -76282014 + MER52A LTR ERV1 1682 1755 0 * 2145 135 3 0 chr13 43463338 43463649 -76281249 + AluSq SINE Alu 1 312 -1 640 200 193 0 chr13 43463662 43463802 -76281096 + AluSg/x SINE Alu 135 301 -9 2394 114 41 11 chr13 43463944 43464070 -76280828 - LTR12 LTR ERV1 0 714 375 6180 90 46 0 chr13 43464070 43464860 -76280038 - LTR12 LTR ERV1 0 826 1 2151 120 13 0 chr13 43466390 43466698 -76278200 + AluSx SINE Alu 1 312 0 707 121 0 43 chr13 43466846 43466962 -76277936 + FLAM_A SINE Alu 24 134 -8 1049 214 86 62 chr13 43467522 43467906 -76276992 - LTR1B LTR ERV1 -433 393 1 820 201 85 0 chr13 43467911 43468100 -76276798 - L1MB7 LINE L1 -59 6125 5921 2065 135 3 3 chr13 43468316 43468627 -76276271 - AluSq SINE Alu -2 311 1 1173 141 40 5 chr13 43468713 43468911 -76275987 - AluSx SINE Alu -107 205 1 1234 216 65 129 chr13 43469029 43469136 -76275762 - L1MC4 LINE L1 -30 8012 7900 264 100 0 0 chr13 43469136 43469176 -76275722 + (CA)n Simple_repeat Simple_repeat 2 41 0 1234 216 65 129 chr13 43469176 43469389 -76275509 - L1MC4 LINE L1 -142 7900 7675 559 168 14 154 chr13 43469389 43469532 -76275366 - FLAM_C SINE Alu -8 125 3 1234 216 65 129 chr13 43469532 43469738 -76275160 - L1MC4 LINE L1 -367 7675 7531 2284 99 10 0 chr13 43469738 43470032 -76274866 - AluSg SINE Alu -13 297 1 1234 216 65 129 chr13 43470032 43470146 -76274752 - L1MC4 LINE L1 -511 7531 7411 833 133 0 0 chr13 43470246 43470359 -76274539 + FRAM SINE Alu 1 106 -70 1967 140 0 4 chr13 43470417 43470695 -76274203 - AluJb SINE Alu -27 285 9 258 281 45 0 chr13 43470715 43470804 -76274094 - L1M4 LINE L1 -2368 3778 3686 436 230 127 70 chr13 43470826 43471157 -76273741 - L1M4 LINE L1 -2932 3214 2865 297 318 112 0 chr13 43471180 43471287 -76273611 - MIR SINE MIR -67 141 23 2015 99 31 20 chr13 43472195 43472488 -76272410 - AluSx SINE Alu -16 296 1 846 153 0 15 chr13 43472651 43472782 -76272116 + FLAM_C SINE Alu 1 129 -4 1758 156 3 27 chr13 43472863 43473158 -76271740 - AluSx SINE Alu -24 288 1 1391 156 62 0 chr13 43473229 43473485 -76271413 - MER65A LTR ERV1 0 445 174 1848 175 0 13 chr13 43473537 43473840 -76271058 + AluJo SINE Alu 1 299 -13 2000 138 14 0 chr13 43473840 43474137 -76270761 + AluSg SINE Alu 1 301 -9 293 136 0 0 chr13 43474142 43474186 -76270712 - LTR54 LTR ERV1 -68 442 399 837 129 58 0 chr13 43474204 43474343 -76270555 - MER65B LTR ERV1 -345 186 40 2311 115 0 0 chr13 43474350 43474663 -76270235 - AluSq SINE Alu 0 313 1 207 0 0 0 chr13 43474663 43474686 -76270212 + (T)n Simple_repeat Simple_repeat 1 23 0 231 163 23 0 chr13 43474686 43474729 -76270169 - MER65A LTR ERV1 -401 44 1 339 259 111 69 chr13 43474814 43475218 -76269680 + MLT1L LTR MaLR 168 615 0 1886 281 13 2 chr13 43475302 43475761 -76269137 + LTR16B LTR ERVL 1 464 0 2387 128 67 78 chr13 43475844 43476012 -76268886 - MSTB2 LTR MaLR 0 457 289 2209 93 10 3 chr13 43476012 43476302 -76268596 + AluSg SINE Alu 1 292 -18 2387 128 67 78 chr13 43476302 43476595 -76268303 - MSTB2 LTR MaLR -168 289 1 719 152 0 32 chr13 43476695 43476820 -76268078 - L1PB3 LINE L1 0 6154 6034 1016 228 54 131 chr13 43476921 43477569 -76267329 + MLT1G LTR MaLR 13 590 0 186 281 0 18 chr13 43477569 43477626 -76267272 + L2 LINE L2 676 731 -2583 283 333 0 0 chr13 43477724 43477799 -76267099 + MER91A DNA MER1_type 1 75 -121 2625 35 0 13 chr13 43477810 43478123 -76266775 - AluY SINE Alu -2 309 1 1897 109 7 25 chr13 43478126 43478410 -76266488 - AluSx SINE Alu -14 298 20 2374 91 7 3 chr13 43478521 43478828 -76266070 - AluSp SINE Alu -5 308 1 797 174 8 0 chr13 43478895 43479027 -76265871 + MER3 DNA MER1_type 1 133 -76 1332 192 11 11 chr13 43479030 43479291 -76265607 - AluJo SINE Alu -11 301 41 1764 159 0 54 chr13 43479296 43479611 -76265287 - AluSx SINE Alu -14 298 1 233 167 0 0 chr13 43479611 43479653 -76265245 + MER3 DNA MER1_type 153 194 -15 287 330 29 0 chr13 43480338 43480441 -76264457 + MIR SINE MIR 106 211 -51 866 193 0 0 chr13 43480815 43480965 -76263933 - AluJb SINE Alu -26 286 137 2179 119 10 0 chr13 43480983 43481286 -76263612 - AluSx SINE Alu 0 312 7 609 271 70 80 chr13 43481312 43481550 -76263348 - MLT1L LTR MaLR -81 534 295 234 0 0 0 chr13 43481550 43481576 -76263322 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1901 96 61 0 chr13 43481576 43481837 -76263061 - AluSx SINE Alu -32 280 4 1996 119 0 34 chr13 43481843 43482169 -76262729 - AluSx SINE Alu 0 316 1 609 271 70 80 chr13 43482169 43482319 -76262579 - MLT1L LTR MaLR -324 291 141 2161 113 7 13 chr13 43483549 43483851 -76261047 + AluSx SINE Alu 1 300 -12 2202 116 0 0 chr13 43484855 43485147 -76259751 + AluSq SINE Alu 1 292 -21 1590 157 75 20 chr13 43485456 43485750 -76259148 - AluJo SINE Alu -2 310 1 281 202 53 32 chr13 43485787 43485881 -76259017 + MER34 LTR ERV1 435 530 -12 566 229 114 0 chr13 43485892 43486023 -76258875 - MIR SINE MIR -64 198 53 827 145 0 23 chr13 43486150 43486281 -76258617 - AluJb SINE Alu -101 211 84 2121 121 0 0 chr13 43486671 43486994 -76257904 - AluSx SINE Alu 0 323 1 23 0 0 0 chr13 43487032 43487055 -76257843 + AT_rich Low_complexity Low_complexity 1 23 0 750 243 21 46 chr13 43489113 43489352 -76255546 + LTR16B LTR ERVL 232 464 0 442 313 6 45 chr13 43489509 43489651 -76255247 + MIR SINE MIR 33 168 -94 1829 129 42 14 chr13 43489651 43489937 -76254961 + AluJo SINE Alu 5 298 -14 442 313 6 45 chr13 43489937 43489973 -76254925 + MIR SINE MIR 168 204 -58 25 31 0 0 chr13 43490278 43490310 -76254588 + GC_rich Low_complexity Low_complexity 1 32 0 24 77 0 0 chr13 43490365 43490417 -76254481 + GC_rich Low_complexity Low_complexity 1 52 0 1996 104 26 23 chr13 43490491 43490800 -76254098 + AluSg SINE Alu 1 310 0 228 35 0 0 chr13 43490815 43490844 -76254054 + (GA)n Simple_repeat Simple_repeat 2 30 0 721 183 43 9 chr13 43490907 43491022 -76253876 + FLAM_C SINE Alu 6 124 -19 283 72 26 5 chr13 43491030 43491225 -76253673 + AluSg SINE Alu 1 294 -6 249 182 0 0 chr13 43491315 43491370 -76253528 + (TG)n Simple_repeat Simple_repeat 2 56 0 2558 57 0 0 chr13 43491651 43491949 -76252949 - AluY SINE Alu -13 298 1 1480 142 97 22 chr13 43493031 43493299 -76251599 + AluJo SINE Alu 9 296 -16 4413 75 16 0 chr13 43493754 43494315 -76250583 - L1PA14 LINE L1 0 6161 5592 807 174 0 35 chr13 43495044 43495188 -76249710 + FLAM_C SINE Alu 1 139 -4 504 303 51 67 chr13 43495571 43495755 -76249143 + MIR SINE MIR 3 183 -79 1598 199 0 0 chr13 43495755 43496046 -76248852 + AluJb SINE Alu 1 291 -21 504 303 51 67 chr13 43496046 43496115 -76248783 + MIR SINE MIR 183 252 -10 399 308 50 8 chr13 43496128 43496248 -76248650 - L2 LINE L2 -9 3304 3180 1259 280 93 23 chr13 43496705 43497180 -76247718 + MLT1J LTR MaLR 1 508 -3 315 268 65 59 chr13 43497554 43497707 -76247191 - L2 LINE L2 -1 3312 3159 24 0 0 0 chr13 43497707 43497731 -76247167 + AT_rich Low_complexity Low_complexity 1 24 0 294 194 0 0 chr13 43497772 43497844 -76247054 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 2084 137 0 0 chr13 43497949 43498241 -76246657 + AluSx SINE Alu 1 292 -20 1277 242 104 103 chr13 43498241 43498556 -76246342 + L1MEc LINE L1 1030 1343 -5053 2062 164 0 0 chr13 43498556 43498866 -76246032 + AluSq SINE Alu 1 310 -3 1277 242 104 103 chr13 43498866 43499069 -76245829 + L1MEc LINE L1 1343 1544 -4852 2198 141 0 0 chr13 43499069 43499381 -76245517 + AluSx SINE Alu 1 312 0 1675 101 0 0 chr13 43499389 43499596 -76245302 + AluSq SINE Alu 1 207 -106 293 176 0 0 chr13 43499596 43499647 -76245251 + AluSq SINE Alu 250 300 0 1277 242 104 103 chr13 43499647 43500050 -76244848 + L1MEc LINE L1 1550 1951 -4445 1739 178 0 17 chr13 43500050 43500348 -76244550 + AluJo SINE Alu 1 293 -19 1920 174 3 0 chr13 43500353 43500658 -76244240 - AluJb SINE Alu -6 306 1 1277 242 104 103 chr13 43500658 43500751 -76244147 + L1MEc LINE L1 1954 2045 -4351 626 268 0 0 chr13 43500751 43500878 -76244020 - FLAM_A SINE Alu -6 127 1 1277 242 104 103 chr13 43500878 43501172 -76243726 + L1MEc LINE L1 2045 2409 -3987 2419 84 0 10 chr13 43501199 43501508 -76243390 + AluSp SINE Alu 1 306 -7 2089 125 4 0 chr13 43502071 43502351 -76242547 - AluSg SINE Alu -29 281 1 1730 173 0 33 chr13 43502455 43502761 -76242137 + AluJo SINE Alu 1 296 -16 2210 113 7 3 chr13 43502838 43503140 -76241758 - AluSx SINE Alu -9 303 1 2236 121 3 0 chr13 43503350 43503656 -76241242 - AluSq SINE Alu -6 307 1 1202 155 9 161 chr13 43503688 43503864 -76241034 - AluJo SINE Alu -6 296 197 1943 164 3 10 chr13 43503864 43504176 -76240722 - AluSx SINE Alu -2 310 1 1202 155 9 161 chr13 43504176 43504347 -76240551 - AluJo SINE Alu -105 197 2 2200 95 3 7 chr13 43504491 43504804 -76240094 + AluSp SINE Alu 1 312 0 429 193 158 9 chr13 43505013 43505127 -76239771 - MLT1L LTR MaLR -343 272 142 2182 114 0 3 chr13 43505312 43505609 -76239289 - AluSx SINE Alu -16 296 1 21 0 0 0 chr13 43505669 43505690 -76239208 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr13 43506127 43506167 -76238731 + AT_rich Low_complexity Low_complexity 1 40 0 2264 121 0 0 chr13 43506187 43506485 -76238413 + AluSx SINE Alu 1 298 -14 33 80 0 0 chr13 43506553 43506628 -76238270 + AT_rich Low_complexity Low_complexity 1 75 0 2447 74 0 7 chr13 43506632 43506930 -76237968 + AluSp SINE Alu 1 296 -17 940 160 0 0 chr13 43508210 43508341 -76236557 - FLAM_C SINE Alu -1 132 2 217 260 81 116 chr13 43510276 43510449 -76234449 - MIR SINE MIR -21 241 75 2599 228 88 139 chr13 43510534 43510675 -76234223 - HAL1 LINE L1 0 2507 2360 2143 129 0 3 chr13 43510675 43510985 -76233913 + AluSx SINE Alu 1 309 -3 2599 228 88 139 chr13 43510985 43511190 -76233708 - HAL1 LINE L1 -147 2360 2146 1843 147 13 33 chr13 43511190 43511490 -76233408 + AluJo SINE Alu 1 294 -18 2599 228 88 139 chr13 43511490 43511638 -76233260 - HAL1 LINE L1 -361 2146 1992 2405 72 23 0 chr13 43511638 43511944 -76232954 - AluSp SINE Alu 0 313 1 2599 228 88 139 chr13 43511944 43512187 -76232711 - HAL1 LINE L1 -515 1992 1738 2344 110 0 3 chr13 43512187 43512496 -76232402 - AluSq SINE Alu -5 308 1 2599 228 88 139 chr13 43512496 43512644 -76232254 - HAL1 LINE L1 -769 1738 1584 832 120 0 93 chr13 43512644 43512794 -76232104 - FLAM_C SINE Alu 0 143 8 2599 228 88 139 chr13 43512794 43513641 -76231257 - HAL1 LINE L1 -923 1584 718 2584 148 4 60 chr13 43513653 43514132 -76230766 + MLT2C2 LTR ERVL 11 462 -2 1574 168 0 11 chr13 43514189 43514463 -76230435 - AluSx SINE Alu 0 312 42 1031 293 114 13 chr13 43514862 43515258 -76229640 + HAL1 LINE L1 3 438 -2069 1182 171 89 26 chr13 43515281 43515461 -76229437 + MSTA LTR MaLR 3 207 -221 2444 46 20 7 chr13 43515461 43515763 -76229135 + AluY SINE Alu 1 306 -5 1182 171 89 26 chr13 43515763 43515851 -76229047 + MSTA LTR MaLR 207 288 -140 608 125 19 29 chr13 43516004 43516108 -76228790 - U13 snRNA snRNA -1 103 1 2053 156 3 3 chr13 43516110 43516417 -76228481 - AluJb SINE Alu -5 307 1 1629 192 72 47 chr13 43516497 43516536 -76228362 + MSTD LTR MaLR 1 38 -358 1892 143 4 0 chr13 43516536 43516847 -76228051 - AluSg SINE Alu 0 312 1 1629 192 72 47 chr13 43516847 43517192 -76227706 + MSTD LTR MaLR 38 396 0 5072 240 82 67 chr13 43517194 43518892 -76226006 + MSTD-int LTR MaLR 2 1726 -9 238 111 111 0 chr13 43518900 43518945 -76225953 + MSTD LTR MaLR 1 50 -378 2382 76 0 7 chr13 43518949 43519250 -76225648 + AluY SINE Alu 1 299 -12 2303 195 97 17 chr13 43519383 43520474 -76224424 + L1MC2 LINE L1 4457 5631 -713 1302 168 76 8 chr13 43520479 43520785 -76224113 + L1MC2 LINE L1 6009 7994 -1 360 332 98 10 chr13 43520874 43521079 -76223819 + MIR SINE MIR 40 262 0 399 269 133 84 chr13 43521839 43521972 -76222926 + L3 LINE CR1 1003 1128 -449 2273 69 3 3 chr13 43521972 43522262 -76222636 - AluY SINE Alu -21 290 1 399 269 133 84 chr13 43522262 43522451 -76222447 + L3 LINE CR1 1128 1341 -236 188 397 50 0 chr13 43522470 43522611 -76222287 + MIR3 SINE MIR 33 180 -28 1995 141 13 10 chr13 43522668 43522972 -76221926 + AluSx SINE Alu 1 305 -7 1738 126 4 4 chr13 43523019 43523273 -76221625 + AluSx SINE Alu 29 282 -30 198 0 0 0 chr13 43523276 43523298 -76221600 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1567 170 85 7 chr13 43523455 43523737 -76221161 + AluJb SINE Alu 1 304 -8 579 196 233 0 chr13 43523738 43523871 -76221027 + AluJo/FRAM SINE Alu 139 302 0 215 31 31 0 chr13 43525106 43525138 -76219760 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 336 24 0 0 chr13 43526416 43526457 -76218441 + (A)n Simple_repeat Simple_repeat 1 41 0 345 24 0 0 chr13 43526848 43526890 -76218008 + (A)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr13 43527706 43527727 -76217171 + AT_rich Low_complexity Low_complexity 1 21 0 239 224 0 52 chr13 43533568 43533626 -76211272 + L2 LINE L2 3203 3257 -15 2145 127 0 3 chr13 43533754 43534061 -76210837 + AluSx SINE Alu 1 306 -6 31 26 0 0 chr13 43534464 43534502 -76210396 + AT_rich Low_complexity Low_complexity 1 38 0 2131 109 10 3 chr13 43534998 43535300 -76209598 + AluSx SINE Alu 1 304 -8 2345 111 0 0 chr13 43535639 43535946 -76208952 + AluSx SINE Alu 1 307 -5 1858 204 154 9 chr13 43536129 43536687 -76208211 + L1MC4a LINE L1 7121 7759 -49 261 119 0 0 chr13 43536694 43536736 -76208162 + (TG)n Simple_repeat Simple_repeat 2 43 0 1422 203 41 0 chr13 43536740 43537006 -76207892 - AluJb SINE Alu -35 277 1 232 96 19 39 chr13 43537008 43537060 -76207838 + L1MC4 LINE L1 7991 8041 -1 922 197 0 0 chr13 43537740 43537892 -76207006 - FAM SINE Alu -27 158 7 672 284 46 5 chr13 43537895 43538089 -76206809 - MIR SINE MIR -28 234 33 993 73 0 0 chr13 43538179 43538303 -76206595 + AluSq/x SINE Alu 1 124 -189 408 115 16 0 chr13 43538305 43538366 -76206532 + AluS SINE Alu 229 290 -19 23 0 0 0 chr13 43539149 43539172 -76205726 + AT_rich Low_complexity Low_complexity 1 23 0 1879 154 26 7 chr13 43539435 43539741 -76205157 + AluJb SINE Alu 1 312 0 2367 101 3 13 chr13 43540245 43540561 -76204337 + AluSq SINE Alu 1 313 0 1104 171 22 40 chr13 43540687 43540739 -76204159 + AluJb SINE Alu 82 133 -179 1380 188 0 96 chr13 43540739 43541063 -76203835 + AluJb SINE Alu 1 293 -19 1104 171 22 40 chr13 43541063 43541232 -76203666 + AluJb SINE Alu 133 299 -13 279 0 0 0 chr13 43541255 43541286 -76203612 + (TG)n Simple_repeat Simple_repeat 1 31 0 396 0 0 0 chr13 43541334 43541378 -76203520 + (TG)n Simple_repeat Simple_repeat 2 45 0 2009 123 3 11 chr13 43541379 43541664 -76203234 - AluSx SINE Alu -29 283 1 855 216 0 12 chr13 43541698 43541865 -76203033 + FRAM SINE Alu 1 165 -1 2312 67 0 0 chr13 43542650 43542955 -76201943 + AluY SINE Alu 1 305 0 441 200 152 36 chr13 43543744 43543909 -76200989 + MER105 DNA DNA 21 204 0 371 337 58 0 chr13 43544066 43544238 -76200660 - MIR SINE MIR -34 228 47 222 329 82 12 chr13 43544451 43544536 -76200362 + L2 LINE L2 3178 3268 -4 216 0 0 0 chr13 43544573 43544597 -76200301 + (A)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr13 43544652 43544687 -76200211 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 43545055 43545078 -76199820 + AT_rich Low_complexity Low_complexity 1 23 0 1800 148 11 0 chr13 43545269 43545582 -76199316 + AluSx SINE Alu 1 316 0 2012 129 7 7 chr13 43546206 43546501 -76198397 + AluSg SINE Alu 1 295 -15 1785 139 0 0 chr13 43546526 43546770 -76198128 + AluSx SINE Alu 1 244 -68 2401 82 3 13 chr13 43546804 43547120 -76197778 + AluSp SINE Alu 1 313 0 2218 97 0 0 chr13 43547123 43547421 -76197477 + AluSc SINE Alu 1 298 0 212 280 108 54 chr13 43548136 43548229 -76196669 + MIR SINE MIR 14 111 -151 2248 122 0 0 chr13 43548400 43548703 -76196195 + AluSx SINE Alu 1 303 -9 817 197 40 0 chr13 43549473 43549625 -76195273 - FRAM SINE Alu -8 158 1 2178 126 0 3 chr13 43549632 43549934 -76194964 - AluSx SINE Alu -11 301 1 949 112 0 22 chr13 43550090 43550224 -76194674 + AluJb SINE Alu 1 131 -181 189 326 0 22 chr13 43552110 43552199 -76192699 - L2 LINE L2 -1405 1909 1823 422 198 113 19 chr13 43552717 43552823 -76192075 - MIR SINE MIR -83 179 64 198 132 0 26 chr13 43552814 43552852 -76192046 + L2 LINE L2 3276 3312 -1 * 260 312 32 48 chr13 43553468 43553514 -76191384 + L2 LINE L2 3149 3194 -78 2207 114 0 22 chr13 43553514 43553550 -76191348 - AluSx SINE Alu 0 312 277 216 0 0 0 chr13 43553550 43553574 -76191324 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2207 114 0 22 chr13 43553574 43553852 -76191046 - AluSx SINE Alu -35 277 5 260 312 32 48 chr13 43553852 43553930 -76190968 + L2 LINE L2 3194 3271 -1 348 83 0 0 chr13 43554649 43554697 -76190201 + (TA)n Simple_repeat Simple_repeat 2 49 0 1498 171 3 70 chr13 43554738 43555036 -76189862 - AluJo SINE Alu -30 282 5 2131 143 0 3 chr13 43555113 43555421 -76189477 - AluSg SINE Alu -3 307 1 2539 57 0 0 chr13 43555557 43555856 -76189042 + AluY SINE Alu 1 299 -12 2227 67 0 3 chr13 43556053 43556375 -76188523 + AluY SINE Alu 1 321 0 2250 93 7 7 chr13 43557460 43557761 -76187137 + AluSg SINE Alu 1 301 -9 691 265 263 25 chr13 43557817 43558289 -76186609 + MLT1K LTR MaLR 2 585 -3 1299 186 27 0 chr13 43558362 43558630 -76186268 + AluJb SINE Alu 86 359 0 201 191 24 0 chr13 43558696 43558738 -76186160 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr13 43558859 43558880 -76186018 + AT_rich Low_complexity Low_complexity 1 21 0 244 261 70 84 chr13 43558883 43559098 -76185800 - L1MC4 LINE L1 -372 7670 7459 451 233 27 34 chr13 43559103 43559249 -76185649 - L1MC4 LINE L1 -1891 5917 5773 747 263 27 6 chr13 43559270 43559528 -76185370 - L1ME4a LINE L1 -278 5843 5572 30 0 0 0 chr13 43559573 43559603 -76185295 + AT_rich Low_complexity Low_complexity 1 30 0 234 105 0 0 chr13 43559705 43559743 -76185155 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 369 0 0 0 chr13 43560038 43560079 -76184819 + (CA)n Simple_repeat Simple_repeat 2 42 0 210 37 0 0 chr13 43560222 43560249 -76184649 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1678 175 7 21 chr13 43560252 43560538 -76184360 - AluJo SINE Alu -30 282 1 391 276 60 37 chr13 43560979 43561330 -76183568 + MLT1K LTR MaLR 228 586 -2 306 270 88 46 chr13 43561539 43561977 -76182921 + LTR33 LTR ERVL 24 508 -13 232 274 47 66 chr13 43562521 43562627 -76182271 + L2 LINE L2 3137 3240 -32 2124 169 54 41 chr13 43562862 43563323 -76181575 + MLT1C LTR MaLR 1 467 0 543 230 66 20 chr13 43563412 43563564 -76181334 + MIR SINE MIR 94 252 -10 314 306 35 0 chr13 43563579 43563664 -76181234 - MIR SINE MIR -57 151 64 2354 82 0 7 chr13 43563956 43564261 -76180637 + AluSc SINE Alu 3 305 -4 203 86 0 29 chr13 43565202 43565237 -76179661 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 207 0 0 0 chr13 43565777 43565800 -76179098 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1964 160 3 0 chr13 43565805 43566111 -76178787 - AluSx SINE Alu -5 307 1 848 134 0 22 chr13 43566609 43566743 -76178155 - FLAM_C SINE Alu -2 131 1 2020 139 3 3 chr13 43567061 43567355 -76177543 + AluSx SINE Alu 2 295 -17 182 61 0 30 chr13 43567355 43567388 -76177510 + (TA)n Simple_repeat Simple_repeat 2 33 0 936 160 0 0 chr13 43567394 43567544 -76177354 + AluJb SINE Alu 143 292 -20 1519 185 11 0 chr13 43567548 43567808 -76177090 - AluJo SINE Alu -49 263 1 406 224 191 7 chr13 43568059 43568206 -76176692 + MER5A DNA MER1_type 9 182 -7 43 0 0 0 chr13 43568652 43568695 -76176203 + AT_rich Low_complexity Low_complexity 1 43 0 225 269 15 0 chr13 43570403 43570470 -76174428 + Tigger7 DNA MER2_type 1774 1841 -646 247 261 205 4 chr13 43571024 43571202 -76173696 - MIR SINE MIR -54 208 3 2624 105 8 6 chr13 43571555 43571917 -76172981 - THE1B LTR MaLR 0 364 2 2233 111 3 3 chr13 43572662 43572969 -76171929 + AluSc SINE Alu 1 307 -2 2142 138 0 0 chr13 43573019 43573331 -76171567 - AluSx SINE Alu 0 312 1 22 0 0 0 chr13 43573513 43573535 -76171363 + AT_rich Low_complexity Low_complexity 1 22 0 364 343 92 18 chr13 43573565 43573848 -76171050 + L3 LINE CR1 1193 1496 -81 2079 123 3 7 chr13 43574576 43574878 -76170020 - AluSx SINE Alu -11 301 1 1933 170 0 0 chr13 43575125 43575414 -76169484 - AluJo SINE Alu -23 289 1 2336 99 3 0 chr13 43575479 43575781 -76169117 - AluSp SINE Alu -10 303 1 1797 155 3 23 chr13 43576220 43576529 -76168369 + AluJo SINE Alu 1 303 -9 2173 114 0 3 chr13 43576979 43577268 -76167630 + AluSg SINE Alu 1 288 -22 225 269 15 0 chr13 43577491 43577558 -76167340 + Tigger7 DNA MER2_type 1774 1841 -646 247 261 205 4 chr13 43578110 43578288 -76166610 - MIR SINE MIR -54 208 3 2624 105 8 6 chr13 43578641 43579003 -76165895 - THE1B LTR MaLR 0 364 2 2229 104 3 3 chr13 43579748 43580045 -76164853 + AluSc SINE Alu 1 297 -12 306 0 0 0 chr13 43580690 43580724 -76164174 + (CA)n Simple_repeat Simple_repeat 2 35 0 240 86 0 0 chr13 43581209 43581244 -76163654 + (T)n Simple_repeat Simple_repeat 1 35 0 503 226 94 31 chr13 43582369 43582528 -76162370 - MIR SINE MIR -48 214 46 328 308 0 0 chr13 43582611 43582702 -76162196 - L2 LINE L2 -4 3309 3219 2036 164 49 49 chr13 43582874 43583060 -76161838 + MSTB LTR MaLR 1 186 -240 2185 127 0 0 chr13 43583060 43583351 -76161547 + AluSx SINE Alu 1 291 -21 2036 164 49 49 chr13 43583351 43583590 -76161308 + MSTB LTR MaLR 185 426 0 660 245 31 20 chr13 43584110 43584306 -76160592 + L1MC5 LINE L1 7710 7907 -54 2233 126 7 0 chr13 43584311 43584621 -76160277 + AluSx SINE Alu 1 312 0 2076 134 13 0 chr13 43586503 43586801 -76158097 + AluSx SINE Alu 1 302 -10 2584 40 3 0 chr13 43586801 43587100 -76157798 + AluY SINE Alu 1 301 -10 2174 112 10 0 chr13 43588598 43588893 -76156005 - AluSp SINE Alu -15 298 1 4723 254 73 42 chr13 43589015 43589986 -76154912 + L1MEc LINE L1 34 973 -5423 2391 71 3 7 chr13 43589986 43590281 -76154617 - AluSp SINE Alu -19 294 1 4723 254 73 42 chr13 43590281 43590900 -76153998 + L1MEc LINE L1 973 1571 -4825 1987 148 0 0 chr13 43590900 43591178 -76153720 + AluSg SINE Alu 2 279 -31 315 0 0 0 chr13 43591181 43591216 -76153682 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4723 254 73 42 chr13 43591216 43591578 -76153320 + L1MEc LINE L1 1572 2053 -4343 246 278 79 56 chr13 43592415 43592541 -76152357 + MIR3 SINE MIR 4 132 -76 28 71 0 0 chr13 43592594 43592650 -76152248 + AT_rich Low_complexity Low_complexity 1 56 0 1112 166 9 74 chr13 43592743 43592801 -76152097 + MER46A DNA MER2_type 1 61 -2670 634 159 106 0 chr13 43592801 43592914 -76151984 - FLAM_A SINE Alu -8 125 1 1112 166 9 74 chr13 43592914 43593084 -76151814 + MER46A DNA MER2_type 61 214 -22 2259 105 0 0 chr13 43593104 43593390 -76151508 - AluSq SINE Alu -23 290 5 191 308 0 0 chr13 43593410 43593462 -76151436 + L2 LINE L2 3216 3267 -5 348 83 0 0 chr13 43594187 43594235 -76150663 + (TA)n Simple_repeat Simple_repeat 2 49 0 1490 171 3 70 chr13 43594276 43594574 -76150324 - AluJo SINE Alu -30 282 5 2125 143 0 3 chr13 43594651 43594959 -76149939 - AluSg SINE Alu -3 307 1 2579 57 0 0 chr13 43595095 43595394 -76149504 + AluY SINE Alu 1 299 -12 2279 67 0 3 chr13 43595591 43595913 -76148985 + AluY SINE Alu 1 321 0 341 237 10 31 chr13 43596749 43596846 -76148052 + MER69 DNA AcHobo 2096 2190 -336 868 128 0 30 chr13 43597582 43597715 -76147183 - FLAM_C SINE Alu -3 130 2 294 298 18 61 chr13 43597856 43598083 -76146815 + MLT1L LTR MaLR 107 317 -194 436 255 0 28 chr13 43598797 43598903 -76145995 + MER5A DNA MER1_type 4 106 -83 306 0 0 0 chr13 43599852 43599886 -76145012 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2202 122 0 0 chr13 43599888 43600182 -76144716 - AluSx SINE Alu -18 294 1 2385 107 22 25 chr13 43600730 43601095 -76143803 + THE1B LTR MaLR 1 364 0 2327 99 0 0 chr13 43601873 43602166 -76142732 + AluSc SINE Alu 1 293 -16 10485 22 3 184 chr13 43602253 43602306 -76142592 - SVA Other Other 0 1386 1325 234 0 0 0 chr13 43602306 43602332 -76142566 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 10485 22 3 184 chr13 43602332 43603989 -76140909 - SVA Other Other -61 1325 3 22 0 0 0 chr13 43603989 43604011 -76140887 + GC_rich Low_complexity Low_complexity 1 22 0 476 314 20 25 chr13 43604011 43604253 -76140645 + CT-rich Low_complexity Low_complexity 1 240 0 257 409 0 8 chr13 43604197 43604329 -76140569 + C-rich Low_complexity Low_complexity 3 133 0 * 2064 130 17 3 chr13 43604642 43604934 -76139964 + AluSx SINE Alu 1 296 -16 3194 128 23 54 chr13 43604935 43605543 -76139355 + L1MA7 LINE L1 5701 6289 -2 235 268 179 0 chr13 43605577 43605700 -76139198 - MIR3 SINE MIR -28 180 36 288 95 24 0 chr13 43606678 43606720 -76138178 + MER75 DNA T2_type 462 504 0 1541 253 104 41 chr13 43606736 43606878 -76138020 + L2 LINE L2 2046 2178 -1136 2350 154 48 17 chr13 43606878 43607294 -76137604 - MSTB1 LTR MaLR -2 430 2 1541 253 104 41 chr13 43607294 43607959 -76136939 + L2 LINE L2 2178 2904 -410 431 143 78 0 chr13 43607966 43608043 -76136855 - Charlie4a DNA MER1_type -2 506 424 2035 141 0 6 chr13 43608043 43608356 -76136542 - AluSx SINE Alu -1 311 1 2047 141 0 0 chr13 43608399 43608683 -76136215 - AluSx SINE Alu -25 287 4 291 100 186 0 chr13 43608690 43608760 -76136138 - Charlie4a DNA MER1_type -75 433 351 1885 203 12 15 chr13 43608777 43609186 -76135712 - Charlie4a DNA MER1_type -100 408 1 636 298 114 27 chr13 43609189 43609565 -76135333 + L2 LINE L2 2905 3313 0 23 33 0 0 chr13 43609676 43609706 -76135192 + AT_rich Low_complexity Low_complexity 1 30 0 223 303 62 21 chr13 43610053 43610198 -76134700 - L2 LINE L2 -955 2359 2209 2116 166 63 96 chr13 43611628 43611998 -76132900 + MER69 DNA AcHobo 1932 2312 -214 2480 95 0 0 chr13 43611998 43612302 -76132596 + AluSx SINE Alu 1 304 -8 2116 166 63 96 chr13 43612302 43612488 -76132410 + MER69 DNA AcHobo 2312 2470 -56 1958 145 3 0 chr13 43612488 43612793 -76132105 + AluSx SINE Alu 1 306 0 2116 166 63 96 chr13 43612793 43612849 -76132049 + MER69 DNA AcHobo 2470 2526 0 258 205 246 57 chr13 43613688 43613810 -76131088 + MIR3 SINE MIR 38 182 -26 282 247 55 0 chr13 43614109 43614182 -76130716 - MER91C DNA MER1_type -62 78 2 2415 95 3 0 chr13 43614763 43615068 -76129830 + AluSx SINE Alu 7 312 0 427 252 17 17 chr13 43615362 43615481 -76129417 + MER5B DNA MER1_type 1 119 -59 650 237 7 0 chr13 43615622 43615761 -76129137 + MER5B DNA MER1_type 39 178 0 1911 148 0 29 chr13 43616091 43616401 -76128497 + AluSx SINE Alu 1 301 -11 2127 102 3 3 chr13 43617378 43617750 -76127148 + AluSq SINE Alu 1 372 0 207 0 0 0 chr13 43617898 43617921 -76126977 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2072 119 14 3 chr13 43618457 43618743 -76126155 - AluSq SINE Alu -24 289 1 190 274 60 12 chr13 43619744 43619828 -76125070 - MIR3 SINE MIR -16 192 105 2194 102 34 0 chr13 43620417 43620710 -76124188 + AluY SINE Alu 3 305 -6 1133 153 0 11 chr13 43620713 43620903 -76123995 + AluSx SINE Alu 1 188 -124 577 95 36 0 chr13 43621007 43621122 -76123776 + AluSx SINE Alu 195 312 0 341 263 10 10 chr13 43621900 43621999 -76122899 - MIR3 SINE MIR -5 203 105 188 286 76 59 chr13 43622113 43622232 -76122666 + L3b LINE CR1 1179 1299 -284 2167 132 0 7 chr13 43622783 43623093 -76121805 + AluSq SINE Alu 1 308 -5 253 143 40 24 chr13 43623137 43623263 -76121635 + (TA)n Simple_repeat Simple_repeat 1 128 0 259 256 64 0 chr13 43623420 43623498 -76121400 - L1ME LINE L1 -329 5792 5710 358 129 0 0 chr13 43623781 43623843 -76121055 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 764 142 41 0 chr13 43623849 43624018 -76120880 + CT-rich Low_complexity Low_complexity 1 176 0 247 65 0 0 chr13 43624022 43624053 -76120845 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr13 43624053 43624076 -76120822 + (TC)n Simple_repeat Simple_repeat 1 23 0 1508 207 26 26 chr13 43624076 43624258 -76120640 - AluJb SINE Alu -7 305 121 549 0 0 0 chr13 43624258 43624319 -76120579 + (TG)n Simple_repeat Simple_repeat 2 62 0 1508 207 26 26 chr13 43624319 43624440 -76120458 - AluJb SINE Alu -190 122 2 1721 146 27 4 chr13 43625174 43625466 -76119432 - AluJb SINE Alu 0 313 16 1650 99 47 0 chr13 43625583 43625815 -76119083 + AluSx SINE Alu 62 304 -8 1179 146 41 55 chr13 43625815 43626035 -76118863 - MER4E LTR ERV1 -186 593 377 1033 84 156 0 chr13 43626137 43626291 -76118607 - MER4E LTR ERV1 -601 178 1 181 283 33 17 chr13 43626684 43626744 -76118154 - MIR SINE MIR -51 211 151 205 163 61 0 chr13 43626745 43626794 -76118104 - L2 LINE L2 0 3313 3262 1057 78 0 0 chr13 43626820 43626949 -76117949 + AluSq/x SINE Alu 1 129 -184 6292 222 123 49 chr13 43627128 43627347 -76117551 - L1MC3 LINE L1 0 7785 7584 2291 117 10 0 chr13 43627347 43627656 -76117242 - AluSx SINE Alu 0 312 1 6292 222 123 49 chr13 43627656 43628097 -76116801 - L1MC3 LINE L1 -201 7584 7177 2519 55 6 13 chr13 43628097 43628408 -76116490 - AluY SINE Alu -2 309 1 6292 222 123 49 chr13 43628408 43628848 -76116050 - L1MC3 LINE L1 -608 7177 6771 1089 200 9 14 chr13 43628848 43629068 -76115830 + MER20 DNA MER1_type 1 219 0 6292 222 123 49 chr13 43629068 43629384 -76115514 - L1MC3 LINE L1 -1014 6771 6480 2290 113 0 3 chr13 43629384 43629693 -76115205 + AluSx SINE Alu 1 308 -4 6292 222 123 49 chr13 43629693 43630586 -76114312 - L1MC3 LINE L1 -1305 6480 5298 2193 107 33 3 chr13 43630837 43631167 -76113731 + AluSc SINE Alu 1 339 0 2143 97 3 48 chr13 43631314 43631624 -76113274 + AluSg SINE Alu 1 296 -14 282 221 104 0 chr13 43631917 43631994 -76112904 - MIR SINE MIR -55 207 123 2098 138 0 3 chr13 43632274 43632571 -76112327 - AluJo SINE Alu -16 296 1 556 190 33 43 chr13 43632609 43632793 -76112105 - Charlie7 DNA MER1_type 0 2612 2431 989 302 78 44 chr13 43632842 43633256 -76111642 - Charlie7 DNA MER1_type -2062 550 112 1931 110 18 14 chr13 43633256 43633568 -76111330 - AluSq SINE Alu 0 313 1 989 302 78 44 chr13 43633568 43633678 -76111220 - Charlie7 DNA MER1_type -2500 112 7 2575 116 29 60 chr13 43633678 43633868 -76111030 + Tigger2a DNA MER2_type 1 195 -2513 1900 139 13 10 chr13 43633868 43634169 -76110729 + AluJb SINE Alu 1 302 -10 2575 116 29 60 chr13 43634169 43634255 -76110643 + Tigger2a DNA MER2_type 195 282 -2426 2405 84 7 0 chr13 43634255 43634554 -76110344 + AluSp SINE Alu 1 301 -12 2575 116 29 60 chr13 43634554 43634723 -76110175 + Tigger2a DNA MER2_type 282 433 -1 1418 77 0 0 chr13 43635544 43635725 -76109173 + AluY SINE Alu 131 311 0 1900 126 18 0 chr13 43635784 43636101 -76108797 - AluSx SINE Alu 0 324 3 2109 125 0 0 chr13 43637300 43637587 -76107311 - AluSg SINE Alu -23 287 1 1779 179 0 22 chr13 43637718 43638031 -76106867 + AluSx SINE Alu 2 307 -5 206 105 53 0 chr13 43638041 43638079 -76106819 + A-rich Low_complexity Low_complexity 1 40 0 2104 130 10 0 chr13 43638407 43638708 -76106190 - AluSx SINE Alu -8 304 1 763 211 75 111 chr13 43638720 43639074 -76105824 - HAL1 LINE L1 -147 2360 2026 2241 99 3 0 chr13 43639074 43639399 -76105499 - AluSp SINE Alu 0 326 1 763 211 75 111 chr13 43639399 43639537 -76105361 - HAL1 LINE L1 -481 2026 1885 718 281 92 20 chr13 43639536 43639831 -76105067 - HAL1 LINE L1 -2081 426 111 * 232 125 0 0 chr13 43639965 43639997 -76104901 - MER46A DNA MER2_type 0 236 205 2210 111 3 0 chr13 43639997 43640286 -76104612 + AluSq SINE Alu 1 290 -23 1112 166 9 74 chr13 43640306 43640476 -76104422 - MER46A DNA MER2_type -2517 214 61 634 159 106 0 chr13 43640476 43640589 -76104309 + FLAM_A SINE Alu 1 125 -8 1112 166 9 74 chr13 43640589 43640647 -76104251 - MER46A DNA MER2_type -2670 61 1 28 71 0 0 chr13 43640740 43640796 -76104102 + AT_rich Low_complexity Low_complexity 1 56 0 246 278 79 56 chr13 43640849 43640975 -76103923 - MIR3 SINE MIR -76 132 4 4723 254 73 42 chr13 43641812 43642174 -76102724 - L1MEc LINE L1 -4343 2053 1704 315 0 0 0 chr13 43642174 43642209 -76102689 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1987 148 0 0 chr13 43642212 43642490 -76102408 - AluSg SINE Alu -31 279 2 4723 254 73 42 chr13 43642490 43643109 -76101789 - L1MEc LINE L1 -4693 1703 1105 2391 71 3 7 chr13 43643109 43643404 -76101494 + AluSp SINE Alu 1 294 -19 4723 254 73 42 chr13 43643404 43644375 -76100523 - L1MEc LINE L1 -5291 1105 34 2174 112 10 0 chr13 43644497 43644792 -76100106 + AluSp SINE Alu 1 298 -15 2617 36 3 0 chr13 43646291 43646593 -76098305 - AluY SINE Alu -8 303 1 2114 128 13 0 chr13 43646593 43646890 -76098008 - AluSx SINE Alu -10 302 1 2269 115 0 3 chr13 43646930 43647234 -76097664 + AluSg SINE Alu 1 303 -7 243 268 138 43 chr13 43647427 43647565 -76097333 + MLT1K LTR MaLR 252 402 -186 4070 149 19 27 chr13 43647578 43648275 -76096623 + LTR8 LTR ERV1 1 691 0 2773 136 57 47 chr13 43648305 43648344 -76096554 - MER21A LTR ERV1 -22 909 872 5311 64 31 0 chr13 43648344 43649014 -76095884 + LTR8 LTR ERV1 1 691 0 2773 136 57 47 chr13 43649014 43649326 -76095572 - MER21A LTR ERV1 -59 872 549 2037 89 100 0 chr13 43649326 43649597 -76095301 - AluSp SINE Alu -15 298 1 2773 136 57 47 chr13 43649597 43649753 -76095145 - MER21A LTR ERV1 -382 549 396 757 245 16 16 chr13 43649764 43649952 -76094946 - AluJb SINE Alu -18 294 107 1200 143 56 5 chr13 43649981 43650197 -76094701 - MER21A LTR ERV1 -704 227 1 349 273 109 0 chr13 43650204 43650314 -76094584 + MLT1K LTR MaLR 435 556 -32 2443 96 0 3 chr13 43651381 43651694 -76093204 + AluSx SINE Alu 1 312 0 188 171 0 0 chr13 43651791 43651826 -76093072 - MIR SINE MIR -111 151 117 297 0 0 0 chr13 43652125 43652158 -76092740 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr13 43652200 43652229 -76092669 + AT_rich Low_complexity Low_complexity 1 29 0 1539 156 8 38 chr13 43652272 43652535 -76092363 - AluJo SINE Alu -57 255 1 2207 148 16 34 chr13 43652539 43652936 -76091962 - L1MB3 LINE L1 -48 6135 5747 486 340 20 5 chr13 43652936 43653139 -76091759 - L3 LINE CR1 -164 1413 1208 1776 140 0 0 chr13 43654312 43654576 -76090322 + AluSx SINE Alu 49 312 0 2344 98 3 0 chr13 43654699 43654995 -76089903 + AluSc SINE Alu 1 297 -12 288 0 0 0 chr13 43655607 43655639 -76089259 + (TC)n Simple_repeat Simple_repeat 2 33 0 1893 171 41 36 chr13 43657666 43658029 -76086869 - MLT1A1 LTR MaLR 0 365 1 281 261 69 23 chr13 43658193 43658323 -76086575 + MER5A DNA MER1_type 4 139 -50 250 281 140 18 chr13 43658426 43658540 -76086358 + MIR SINE MIR 20 147 -115 306 296 51 0 chr13 43658661 43658759 -76086139 + L2 LINE L2 2560 2662 -652 21 0 0 0 chr13 43659210 43659231 -76085667 + AT_rich Low_complexity Low_complexity 1 21 0 3536 154 48 165 chr13 43659277 43660102 -76084796 - L1MC3 LINE L1 0 7785 6865 537 154 22 0 chr13 43660102 43660193 -76084705 - Tigger5 DNA MER2_type 0 2323 2231 231 200 40 0 chr13 43660200 43660250 -76084648 - Tigger5 DNA MER2_type -2270 53 2 3536 154 48 165 chr13 43660250 43660498 -76084400 - L1MC3 LINE L1 -926 6859 6708 2263 144 78 8 chr13 43660509 43660906 -76083992 - MSTB LTR MaLR -1 425 1 28 0 0 0 chr13 43660932 43660960 -76083938 + AT_rich Low_complexity Low_complexity 1 28 0 712 209 7 0 chr13 43660983 43661122 -76083776 - FLAM_C SINE Alu -1 142 3 2251 101 0 3 chr13 43661176 43661472 -76083426 + AluSg SINE Alu 1 295 -15 583 255 60 30 chr13 43661736 43662003 -76082895 + L1ME4a LINE L1 5831 6105 -16 1948 143 0 3 chr13 43662140 43662440 -76082458 - AluJb SINE Alu -13 299 1 27 0 0 0 chr13 43662491 43662518 -76082380 + AT_rich Low_complexity Low_complexity 1 27 0 335 194 28 14 chr13 43662593 43662665 -76082233 - L2 LINE L2 0 3313 3241 363 276 23 51 chr13 43662683 43662770 -76082128 + L1ME4a LINE L1 5690 5778 -343 2419 84 0 13 chr13 43662770 43663080 -76081818 + AluY SINE Alu 1 306 -5 363 276 23 51 chr13 43663080 43663206 -76081692 + L1ME4a LINE L1 5778 5897 -224 1962 122 54 4 chr13 43663359 43663637 -76081261 - AluSg SINE Alu -18 292 1 882 121 0 64 chr13 43664143 43664284 -76080614 - FLAM_C SINE Alu 0 133 2 421 221 229 0 chr13 43664534 43664656 -76080242 - MIR SINE MIR -11 251 102 181 318 12 0 chr13 43664656 43664741 -76080157 + L2 LINE L2 2148 2233 -1081 243 236 160 38 chr13 43664748 43664854 -76080044 + L2 LINE L2 3195 3313 0 355 216 134 0 chr13 43665158 43665255 -76079643 + MIR SINE MIR 14 123 -139 452 300 109 48 chr13 43665262 43665310 -76079588 - MLT1K LTR MaLR 0 588 544 189 0 0 0 chr13 43665310 43665331 -76079567 + (CAA)n Simple_repeat Simple_repeat 1 21 0 452 300 109 48 chr13 43665331 43665770 -76079128 - MLT1K LTR MaLR -44 544 1 403 293 158 34 chr13 43666344 43666641 -76078257 + L2 LINE L2 2904 3237 -76 2128 103 4 4 chr13 43666651 43666963 -76077935 - AluSx SINE Alu 0 312 1 181 0 0 0 chr13 43667410 43667430 -76077468 + (TTTTG)n Simple_repeat Simple_repeat 1 110 0 2056 113 4 0 chr13 43667430 43667704 -76077194 - AluSx SINE Alu -31 281 7 608 31 31 10 chr13 43668734 43668830 -76076068 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 2235 98 0 3 chr13 43669060 43669370 -76075528 + AluSx SINE Alu 1 309 0 2168 114 7 3 chr13 43672087 43672395 -76072503 + AluSx SINE Alu 1 309 -3 1466 103 79 5 chr13 43672398 43672612 -76072286 + MER30 DNA MER1_type 1 230 0 233 261 0 58 chr13 43673416 43673485 -76071413 + L2 LINE L2 3206 3270 -2 24 0 0 0 chr13 43674109 43674133 -76070765 + AT_rich Low_complexity Low_complexity 1 24 0 466 186 0 12 chr13 43674143 43674229 -76070669 - AluJ/FLAM SINE Alu -226 86 2 644 241 21 7 chr13 43674745 43674890 -76070008 - MER58B DNA MER1_type 0 341 195 288 234 0 31 chr13 43674861 43674925 -76069973 - MER58B DNA MER1_type -279 62 1 * 269 323 134 25 chr13 43674936 43675137 -76069761 - MIR SINE MIR 0 262 40 2143 126 3 0 chr13 43675726 43676019 -76068879 - AluSx SINE Alu -18 294 1 198 250 14 83 chr13 43676134 43676206 -76068692 - MIR SINE MIR -78 184 118 924 217 0 0 chr13 43676569 43676767 -76068131 - AluJo SINE Alu -1 311 114 316 219 14 0 chr13 43676767 43676840 -76068058 - L1ME2 LINE L1 -15 6149 6076 708 215 37 6 chr13 43677845 43678008 -76066890 + MIR SINE MIR 31 198 -64 875 193 14 45 chr13 43678014 43678237 -76066661 - L2 LINE L2 -3 3310 3095 2188 107 0 0 chr13 43678237 43678517 -76066381 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr13 43678519 43678546 -76066352 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 274 215 25 91 chr13 43679002 43679123 -76065775 + L2 LINE L2 3152 3264 -49 2233 126 7 0 chr13 43681889 43682199 -76062699 - AluSx SINE Alu 0 312 1 660 245 31 20 chr13 43682204 43682400 -76062498 - L1MC5 LINE L1 -54 7907 7710 2036 164 49 49 chr13 43682920 43683159 -76061739 - MSTB LTR MaLR 0 426 185 2185 127 0 0 chr13 43683159 43683450 -76061448 - AluSx SINE Alu -21 291 1 2036 164 49 49 chr13 43683450 43683636 -76061262 - MSTB LTR MaLR -240 186 1 328 308 0 0 chr13 43683808 43683899 -76060999 + L2 LINE L2 3219 3309 -4 503 226 94 31 chr13 43683982 43684141 -76060757 + MIR SINE MIR 46 214 -48 240 86 0 0 chr13 43685266 43685301 -76059597 + (A)n Simple_repeat Simple_repeat 1 35 0 306 0 0 0 chr13 43685786 43685820 -76059078 + (TG)n Simple_repeat Simple_repeat 2 35 0 2347 80 3 13 chr13 43686465 43686767 -76058131 - AluSq SINE Alu -12 301 3 369 0 0 0 chr13 43687807 43687848 -76057050 + (TG)n Simple_repeat Simple_repeat 2 42 0 2373 148 46 7 chr13 43688263 43688675 -76056223 - MSTC LTR MaLR 0 428 1 1251 171 9 5 chr13 43690041 43690257 -76054641 + AluJo SINE Alu 83 299 -13 2379 104 0 0 chr13 43691584 43691891 -76053007 + AluSg SINE Alu 4 310 0 286 176 20 0 chr13 43692028 43692079 -76052819 - MER66A LTR ERV1 -140 338 287 1544 99 5 18 chr13 43692216 43692437 -76052461 - AluSp SINE Alu -8 305 88 1236 223 10 14 chr13 43693511 43693802 -76051096 - AluSp SINE Alu -13 290 1 2128 138 0 19 chr13 43693830 43694148 -76050750 + AluJb SINE Alu 1 312 0 1275 128 8 64 chr13 43694289 43694524 -76050374 - AluSq SINE Alu -4 309 88 1731 197 7 3 chr13 43694827 43695137 -76049761 - AluJb SINE Alu -1 311 1 36 53 0 0 chr13 43695142 43695199 -76049699 + AT_rich Low_complexity Low_complexity 1 57 0 1921 126 30 0 chr13 43695220 43695511 -76049387 - AluSg SINE Alu 0 301 3 749 186 16 115 chr13 43695597 43695850 -76049048 - L1MD2 LINE L1 -1 6358 6131 * 21624 87 8 4 chr13 43695834 43695857 -76049041 - L1P LINE L1 -2124 4022 4001 389 98 0 0 chr13 43695857 43695918 -76048980 - L1PA3 LINE L1 -1 6154 6094 21624 87 8 4 chr13 43695918 43698888 -76046010 - L1P LINE L1 -2145 4001 1018 1767 170 35 3 chr13 43698946 43699234 -76045664 - AluJb SINE Alu -15 297 1 1238 114 0 0 chr13 43699241 43699407 -76045491 - AluSx SINE Alu -2 308 143 385 141 0 31 chr13 43699408 43699472 -76045426 - AluJo SINE Alu -121 181 120 993 171 0 47 chr13 43699485 43699655 -76045243 - AluSx SINE Alu -150 162 1 508 186 12 0 chr13 43699823 43699909 -76044989 - MER7C DNA MER2_type -28 574 488 2091 119 0 75 chr13 43699915 43700050 -76044848 - MER1B DNA MER1_type -2379 333 189 1540 116 9 21 chr13 43700050 43700283 -76044615 + MER30 DNA MER1_type 1 230 0 2091 119 0 75 chr13 43700283 43700507 -76044391 - MER1B DNA MER1_type -2523 189 1 * 2482 163 40 50 chr13 43700507 43701009 -76043889 - MER7C DNA MER2_type -105 497 1 1631 117 0 0 chr13 43701471 43701693 -76043205 - AluSg/x SINE Alu -19 293 72 1885 134 31 3 chr13 43701698 43701989 -76042909 - AluSx SINE Alu -11 301 3 2226 106 0 0 chr13 43702422 43702736 -76042162 - AluSq SINE Alu 0 314 1 207 0 0 0 chr13 43702762 43702785 -76042113 + (T)n Simple_repeat Simple_repeat 1 23 0 1629 165 34 3 chr13 43702891 43703182 -76041716 + AluJb SINE Alu 1 300 -12 653 247 124 10 chr13 43703209 43703403 -76041495 + MIR SINE MIR 44 259 -3 1967 109 55 0 chr13 43703423 43703697 -76041201 - AluSx SINE Alu -23 289 1 233 260 0 0 chr13 43703901 43703951 -76040947 + Charlie8 DNA MER1_type 1373 1422 -995 2323 96 3 10 chr13 43704121 43704300 -76040598 - AluSx SINE Alu 0 312 134 2228 110 3 0 chr13 43704300 43704621 -76040277 - AluSp SINE Alu 0 313 1 2323 96 3 10 chr13 43704621 43704755 -76040143 - AluSx SINE Alu -178 134 1 21 0 0 0 chr13 43704883 43704904 -76039994 + AT_rich Low_complexity Low_complexity 1 21 0 1954 195 128 76 chr13 43705055 43705756 -76039142 - LTR1B LTR ERV1 -88 738 1 786 183 49 0 chr13 43705781 43705945 -76038953 + L1MC1 LINE L1 6162 6333 0 296 271 17 34 chr13 43705955 43706073 -76038825 - MIR SINE MIR 0 262 147 247 349 40 24 chr13 43706164 43706290 -76038608 - MIR SINE MIR -112 150 23 627 288 35 35 chr13 43706607 43706836 -76038062 - MIR SINE MIR -9 253 25 2021 141 0 17 chr13 43707345 43707664 -76037234 + AluSx SINE Alu 1 312 0 675 269 124 22 chr13 43707860 43708135 -76036763 + L1ME4a LINE L1 5566 5868 -253 1239 217 51 74 chr13 43708172 43708521 -76036377 - L1MC5 LINE L1 -66 7895 7562 2329 96 0 7 chr13 43708521 43708822 -76036076 + AluSq SINE Alu 1 299 -14 1239 217 51 74 chr13 43708822 43709038 -76035860 - L1MC5 LINE L1 -399 7562 7343 2011 159 86 0 chr13 43709067 43709426 -76035472 + MLT1B LTR MaLR 1 390 0 883 130 0 46 chr13 43709546 43709677 -76035221 + FLAM_C SINE Alu 1 125 -18 563 300 53 16 chr13 43709700 43709890 -76035008 - MIR SINE MIR -28 234 38 642 286 47 5 chr13 43710348 43710561 -76034337 + MIR SINE MIR 16 237 -25 7882 110 27 24 chr13 43711641 43712882 -76032016 - MER52C LTR ERV1 0 1278 35 1263 185 46 108 chr13 43713662 43714051 -76030847 + MLT1A1 LTR MaLR 1 365 0 2153 82 0 4 chr13 43714149 43714416 -76030482 + AluSg SINE Alu 14 279 -31 328 0 20 41 chr13 43714419 43714468 -76030430 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 371 294 49 35 chr13 43714498 43714718 -76030180 - MIR SINE MIR -6 256 31 22 0 0 0 chr13 43714743 43714765 -76030133 + AT_rich Low_complexity Low_complexity 1 22 0 2104 149 18 39 chr13 43715585 43715624 -76029274 - THE1C LTR MaLR 0 375 337 2228 141 0 0 chr13 43715624 43715936 -76028962 + AluSx SINE Alu 1 312 0 2104 149 18 39 chr13 43715936 43716279 -76028619 - THE1C LTR MaLR -38 337 1 198 276 134 55 chr13 43716823 43716950 -76027948 + L2 LINE L2 3136 3272 0 1695 168 93 110 chr13 43717438 43717839 -76027059 - MLT2B1 LTR ERVL 0 520 129 1773 169 21 58 chr13 43717839 43718149 -76026749 + MLT1A1 LTR MaLR 1 296 -69 2272 107 0 3 chr13 43718149 43718447 -76026451 - AluSq SINE Alu -16 297 1 1773 169 21 58 chr13 43718447 43718515 -76026383 + MLT1A1 LTR MaLR 296 365 0 1695 168 93 110 chr13 43718515 43718642 -76026256 - MLT2B1 LTR ERVL -391 129 1 387 241 60 9 chr13 43718735 43718851 -76026047 - LTR67 LTR ERVL 0 557 436 268 258 21 129 chr13 43719037 43719231 -76025667 - LTR67 LTR ERVL -364 193 21 1651 175 145 7 chr13 43719880 43720314 -76024584 - LTR54B LTR ERV1 -4 494 1 221 351 9 45 chr13 43720926 43720944 -76023954 + L2 LINE L2 2444 2461 -853 2354 72 3 13 chr13 43720944 43721251 -76023647 - AluSx SINE Alu -8 304 1 221 351 9 45 chr13 43721251 43721343 -76023555 + L2 LINE L2 2461 2550 -764 2532 51 3 13 chr13 43721571 43721883 -76023015 - AluY SINE Alu -2 309 1 2137 116 0 20 chr13 43722311 43722614 -76022284 - AluSx SINE Alu -15 297 1 1240 251 122 43 chr13 43722794 43723403 -76021495 + MLT2F LTR ERVL 1 657 -6 293 288 55 31 chr13 43723936 43724099 -76020799 + MIR SINE MIR 96 262 0 325 313 52 8 chr13 43724142 43724276 -76020622 - MIR SINE MIR 0 262 123 1790 185 93 14 chr13 43724546 43724978 -76019920 + MLT1C LTR MaLR 2 467 0 359 256 134 17 chr13 43725116 43725288 -76019610 - MIR SINE MIR -70 192 1 1885 203 7 56 chr13 43726155 43726234 -76018664 - MSTD LTR MaLR -2 394 313 2162 119 6 3 chr13 43726234 43726545 -76018353 + AluSx SINE Alu 1 312 0 1885 203 7 56 chr13 43726545 43726878 -76018020 - MSTD LTR MaLR -83 313 2 329 276 38 0 chr13 43726899 43727004 -76017894 + LTR33 LTR ERVL 33 141 -380 276 81 0 0 chr13 43727055 43727092 -76017806 + MLT2A2 LTR ERVL 267 303 -150 * 492 261 69 15 chr13 43727059 43727189 -76017709 + MLT2B3 LTR ERVL 267 403 -151 246 118 0 0 chr13 43727171 43727205 -76017693 + MLT2A2 LTR ERVL 293 326 -127 * 531 105 0 0 chr13 43727233 43727309 -76017589 + Alu SINE Alu 220 295 -14 615 34 2 0 chr13 43727309 43727428 -76017470 - MLT2A2 LTR ERVL -355 98 1 202 254 0 36 chr13 43727506 43727561 -76017337 + CT-rich Low_complexity Low_complexity 2 54 0 1351 165 9 120 chr13 43728242 43728575 -76016323 - AluJo SINE Alu -4 298 3 552 230 115 30 chr13 43728813 43729039 -76015859 + MIR SINE MIR 19 258 -4 2106 164 22 3 chr13 43730013 43730379 -76014519 - L1MB2 LINE L1 0 6171 5799 357 270 84 22 chr13 43730666 43730844 -76014054 + MIR SINE MIR 62 250 -12 1386 174 4 68 chr13 43731103 43731384 -76013514 + AluJo SINE Alu 1 263 -49 266 0 0 29 chr13 43731883 43731918 -76012980 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 2014 109 0 4 chr13 43731926 43732200 -76012698 - AluSx SINE Alu -39 273 1 22 56 0 0 chr13 43733210 43733246 -76011652 + AT_rich Low_complexity Low_complexity 1 36 0 326 250 21 21 chr13 43733394 43733490 -76011408 - L1MB2 LINE L1 -392 5729 5634 4499 230 165 76 chr13 43733956 43734208 -76010690 - HAL1 LINE L1 0 2507 2279 1756 143 0 51 chr13 43734208 43734502 -76010396 - AluJb SINE Alu -11 301 23 4499 230 165 76 chr13 43734502 43736511 -76008387 - HAL1 LINE L1 -228 2279 44 257 339 36 26 chr13 43736887 43737002 -76007896 - MIR SINE MIR -61 147 40 227 137 78 20 chr13 43738570 43738621 -76006277 - MIR SINE MIR -128 134 81 27 29 0 0 chr13 43742462 43742496 -76002402 + AT_rich Low_complexity Low_complexity 1 34 0 800 276 154 34 chr13 43742585 43743052 -76001846 - LTR33A LTR ERVL 0 523 1 2084 160 98 50 chr13 43743289 43743409 -76001489 + MLT1D LTR MaLR 3 116 -389 2269 112 3 16 chr13 43743409 43743721 -76001177 - AluSx SINE Alu -4 308 1 2084 160 98 50 chr13 43743721 43744080 -76000818 + MLT1D LTR MaLR 116 505 0 359 241 62 25 chr13 43744365 43744516 -76000382 + MLT1F1 LTR MaLR 42 198 -369 243 216 0 0 chr13 43744537 43744640 -76000258 + CT-rich Low_complexity Low_complexity 1 103 0 1280 115 146 181 chr13 43745199 43745618 -75999280 - MER4A LTR ERV1 0 664 261 431 263 67 34 chr13 43745687 43745866 -75999032 - MIR SINE MIR -70 192 8 2038 129 7 0 chr13 43745988 43746317 -75998581 - AluSx SINE Alu 0 331 1 1058 170 9 65 chr13 43746352 43746582 -75998316 - MER20 DNA MER1_type -2 217 1 312 91 0 0 chr13 43746723 43746767 -75998131 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1746 171 34 0 chr13 43746767 43747059 -75997839 - AluJb SINE Alu -10 302 1 1038 255 93 26 chr13 43747556 43747933 -75996965 - LTR16C LTR ERVL -6 485 84 1861 258 60 34 chr13 43747954 43748519 -75996379 - MLT1E LTR MaLR 0 593 14 2175 120 3 0 chr13 43749475 43749775 -75995123 + AluSg SINE Alu 1 301 -9 2112 146 3 0 chr13 43750013 43750383 -75994515 - AluSx SINE Alu 0 371 1 215 220 88 0 chr13 43750834 43750925 -75993973 + L2 LINE L2 949 1047 -2267 1081 188 14 19 chr13 43750959 43751167 -75993731 - MSTD LTR MaLR -3 393 187 1083 118 6 30 chr13 43751169 43751338 -75993560 - AluSg/x SINE Alu -11 301 137 910 160 19 18 chr13 43751340 43751506 -75993392 - MSTD LTR MaLR -243 153 7 3163 267 132 16 chr13 43751513 43753521 -75991377 + L2 LINE L2 1063 3313 0 1627 41 0 0 chr13 43754196 43754390 -75990508 + L1PA6 LINE L1 5959 6152 -2 2119 166 24 7 chr13 43754424 43754833 -75990065 + L1MB8 LINE L1 5751 6166 -12 348 197 19 188 chr13 43754897 43755004 -75989894 + MER69A DNA AcHobo 2 59 -2467 2319 109 0 0 chr13 43755004 43755307 -75989591 - AluSg SINE Alu -7 303 1 348 197 19 188 chr13 43755307 43755407 -75989491 + MER69A DNA AcHobo 59 174 -3 24 53 0 0 chr13 43755759 43755797 -75989101 + AT_rich Low_complexity Low_complexity 1 38 0 314 272 97 16 chr13 43756908 43757105 -75987793 - MIR SINE MIR -7 255 40 835 226 71 4 chr13 43757271 43757537 -75987361 + L2 LINE L2 2228 2511 -803 9373 103 9 7 chr13 43757540 43758816 -75986082 - HSMAR1 DNA Mariner -3 1284 6 852 233 224 26 chr13 43758816 43759237 -75985661 + L2 LINE L2 2514 2850 -463 2069 195 6 3 chr13 43759237 43759601 -75985297 - MLT1A1 LTR MaLR 0 365 1 852 233 224 26 chr13 43759601 43759841 -75985057 + L2 LINE L2 2850 3312 -1 1719 146 56 14 chr13 43759972 43760259 -75984639 - AluJb SINE Alu -11 301 3 513 177 102 128 chr13 43760953 43761173 -75983725 - L1MC5 LINE L1 -51 7910 7697 2052 149 0 3 chr13 43761173 43761481 -75983417 + AluJb SINE Alu 1 307 -5 513 177 102 128 chr13 43761481 43761526 -75983372 - L1MC5 LINE L1 -264 7697 7652 307 291 81 34 chr13 43761764 43761912 -75982986 + MIR SINE MIR 50 204 -58 2067 125 0 67 chr13 43762021 43762350 -75982548 + AluSx SINE Alu 1 307 -5 547 292 96 48 chr13 43763165 43763497 -75981401 + L2 LINE L2 2916 3263 -9 288 142 43 185 chr13 43763513 43763637 -75981261 - MIR SINE MIR -11 251 154 2196 99 7 17 chr13 43763637 43763929 -75980969 - AluSx SINE Alu -23 289 1 288 142 43 185 chr13 43763929 43763966 -75980932 - MIR SINE MIR -108 154 113 855 138 0 15 chr13 43764751 43764881 -75980017 + FLAM_A SINE Alu 1 128 -5 203 229 0 0 chr13 43764957 43764992 -75979906 + (CGTG)n Simple_repeat Simple_repeat 4 38 0 1531 261 118 39 chr13 43765136 43765640 -75979258 + MER115 DNA AcHobo 11 575 -118 2268 200 113 16 chr13 43765640 43766199 -75978699 + MER90 LTR ERV1 2 614 0 1531 261 118 39 chr13 43766199 43766314 -75978584 + MER115 DNA AcHobo 575 679 -14 2072 108 0 0 chr13 43766913 43767182 -75977716 - AluSx SINE Alu -2 310 42 453 127 14 0 chr13 43767182 43767253 -75977645 - AluS SINE Alu -240 73 2 2191 114 0 32 chr13 43767750 43768058 -75976840 - AluSx SINE Alu -14 298 1 340 108 45 27 chr13 43768059 43768161 -75976737 + T-rich Low_complexity Low_complexity 3 109 -6 2411 89 3 10 chr13 43768161 43768475 -75976423 - AluSx SINE Alu 0 312 1 850 137 0 0 chr13 43768500 43768617 -75976281 + FLAM_C SINE Alu 2 118 -15 34 24 0 0 chr13 43768617 43768658 -75976240 + AT_rich Low_complexity Low_complexity 1 41 0 550 265 56 68 chr13 43768658 43768753 -75976145 - L1MC4 LINE L1 -24 8018 7923 306 0 0 0 chr13 43768753 43768787 -75976111 + (CA)n Simple_repeat Simple_repeat 2 35 0 550 265 56 68 chr13 43768787 43769071 -75975827 - L1MC4 LINE L1 -119 7923 7521 5250 129 28 23 chr13 43769090 43769964 -75974934 - L1MC1 LINE L1 -16 6317 5440 182 330 22 22 chr13 43769965 43770056 -75974842 - L3 LINE CR1 -164 1413 1323 775 234 16 96 chr13 43770176 43770479 -75974419 + Charlie8 DNA MER1_type 1 279 -2138 247 267 53 0 chr13 43770528 43770603 -75974295 + Charlie8 DNA MER1_type 2339 2417 0 1217 189 68 4 chr13 43770651 43770823 -75974075 - AluJo SINE Alu 0 307 109 198 0 0 0 chr13 43770823 43770845 -75974053 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1217 189 68 4 chr13 43770845 43770961 -75973937 - AluJo SINE Alu -198 109 2 255 239 14 42 chr13 43770968 43771039 -75973859 - MIR SINE MIR -75 187 119 208 270 63 16 chr13 43772403 43772466 -75972432 - L2 LINE L2 -55 3217 3152 467 296 136 0 chr13 43772588 43772750 -75972148 - MER63A DNA MER1_type -23 187 4 948 147 0 0 chr13 43772779 43772929 -75971969 + FRAM SINE Alu 8 157 -19 396 228 50 95 chr13 43773381 43773570 -75971328 - MIR3 SINE MIR -7 201 17 2405 162 86 35 chr13 43773586 43774099 -75970799 + LTR55 LTR ERV 1 539 -9 1719 166 0 3 chr13 43774140 43774429 -75970469 + AluJb SINE Alu 1 288 -24 26 0 0 0 chr13 43774430 43774456 -75970442 + AT_rich Low_complexity Low_complexity 1 26 0 442 221 52 44 chr13 43775340 43775476 -75969422 - MIR SINE MIR -47 215 79 1181 153 64 70 chr13 43775508 43775822 -75969076 + MER33 DNA MER1_type 6 317 -7 576 268 90 38 chr13 43777182 43777367 -75967531 + MIR3 SINE MIR 5 205 -3 2371 93 0 0 chr13 43777689 43778002 -75966896 - AluSq SINE Alu 0 313 1 1263 203 12 92 chr13 43778535 43778823 -75966075 - Charlie5 DNA MER1_type 0 2624 2379 1698 158 11 0 chr13 43778823 43779108 -75965790 - AluJo SINE Alu -23 289 2 1263 203 12 92 chr13 43779108 43779242 -75965656 - Charlie5 DNA MER1_type -245 2379 2236 553 217 17 0 chr13 43779252 43779372 -75965526 - MER3 DNA MER1_type -87 122 48 268 264 18 45 chr13 43779459 43779569 -75965329 + L2 LINE L2 3160 3266 -6 186 43 0 0 chr13 43780642 43780665 -75964233 + (TTG)n Simple_repeat Simple_repeat 2 24 0 768 286 24 78 chr13 43781372 43781784 -75963114 - MLT1K LTR MaLR 0 588 199 511 296 62 36 chr13 43782078 43782352 -75962546 + L1MC4 LINE L1 7618 7898 -144 339 25 0 0 chr13 43782359 43782399 -75962499 + (TG)n Simple_repeat Simple_repeat 2 41 0 650 166 283 0 chr13 43782830 43782975 -75961923 - MLT1D LTR MaLR 0 505 320 1359 212 61 88 chr13 43783208 43783317 -75961581 + L1MC5 LINE L1 7260 7370 -591 2177 68 3 19 chr13 43783317 43783663 -75961235 + AluY SINE Alu 1 311 0 1359 212 61 88 chr13 43783663 43784030 -75960868 + L1MC5 LINE L1 7370 7746 -215 248 0 0 30 chr13 43784030 43784063 -75960835 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 2266 60 4 0 chr13 43784067 43784348 -75960550 - AluY SINE Alu -29 282 1 1359 212 61 88 chr13 43784348 43784393 -75960505 + L1MC5 LINE L1 7749 7794 -167 11066 34 1 0 chr13 43784393 43786456 -75958442 + L1PA5 LINE L1 4090 6153 -1 1359 212 61 88 chr13 43786456 43786616 -75958282 + L1MC5 LINE L1 7794 7929 -32 814 241 85 98 chr13 43786641 43787159 -75957739 + MLT1J LTR MaLR 1 511 0 246 297 16 0 chr13 43787244 43787308 -75957590 - L2 LINE L2 -220 3052 2988 1293 171 105 49 chr13 43787344 43787630 -75957268 + AluJb SINE Alu 1 302 0 237 265 20 82 chr13 43788179 43788277 -75956621 + MIR SINE MIR 56 147 -61 391 152 22 87 chr13 43788952 43789044 -75955854 - MLT1D LTR MaLR -323 182 95 2130 96 3 7 chr13 43789170 43789472 -75955426 + AluSx SINE Alu 1 301 -11 1710 199 39 34 chr13 43789472 43789880 -75955018 - MLT1D LTR MaLR -95 410 1 1570 174 7 4 chr13 43791553 43791851 -75953047 - AluJb SINE Alu 0 307 9 1864 132 0 24 chr13 43791924 43792219 -75952679 + AluSx SINE Alu 1 288 -24 380 213 143 49 chr13 43792246 43792490 -75952408 + L1ME4a LINE L1 5855 6121 0 438 241 86 37 chr13 43793152 43793314 -75951584 + MIR SINE MIR 69 238 -24 925 111 0 42 chr13 43793568 43793712 -75951186 + AluJo SINE Alu 2 139 -173 1563 168 15 4 chr13 43793716 43793984 -75950914 + AluJo SINE Alu 21 291 -21 4319 188 51 9 chr13 43794964 43795333 -75949565 - MER54A LTR ERVL -2 899 547 2313 56 10 7 chr13 43795333 43795638 -75949260 + AluY SINE Alu 3 308 -3 4319 188 51 9 chr13 43795638 43796131 -75948767 - MER54A LTR ERVL -354 547 1 753 212 61 30 chr13 43796263 43796461 -75948437 - MIR SINE MIR -11 251 48 250 261 118 65 chr13 43796971 43797124 -75947774 + L2 LINE L2 3108 3268 -4 1794 165 0 0 chr13 43798189 43798480 -75946418 - AluJb SINE Alu -20 292 2 1695 69 142 0 chr13 43799664 43799952 -75944946 + AluY SINE Alu 1 323 0 2340 98 48 31 chr13 43800033 43800391 -75944507 + THE1B LTR MaLR 1 364 0 448 241 36 9 chr13 43801855 43801967 -75942931 + MIR SINE MIR 32 146 -116 2106 127 0 10 chr13 43802523 43802837 -75942061 + AluSx SINE Alu 1 311 -1 374 332 31 57 chr13 43803055 43803130 -75941768 - L2 LINE L2 -3 3269 3194 850 132 0 31 chr13 43803130 43803259 -75941639 + FLAM_C SINE Alu 3 127 -6 374 332 31 57 chr13 43803259 43803376 -75941522 - L2 LINE L2 -78 3194 3082 382 194 21 11 chr13 43803903 43803996 -75940902 - L1ME3A LINE L1 0 6170 6077 202 294 59 0 chr13 43804855 43804923 -75939975 - L2 LINE L2 0 3272 3201 886 289 87 18 chr13 43804978 43805354 -75939544 + MLT1J2 LTR MaLR 66 444 -6 2247 97 0 7 chr13 43805437 43805745 -75939153 + AluSg SINE Alu 1 306 -4 319 232 24 73 chr13 43805798 43805880 -75939018 + L1MC4 LINE L1 6635 6712 -1330 331 290 71 18 chr13 43805993 43806162 -75938736 + MLT1K LTR MaLR 229 406 -182 1529 246 90 44 chr13 43806606 43807172 -75937726 - MLT1G1 LTR MaLR -3 592 1 361 284 26 84 chr13 43807244 43807293 -75937605 + MLT1K LTR MaLR 393 443 -145 1800 163 0 7 chr13 43807293 43807613 -75937285 + AluSx SINE Alu 1 312 0 361 284 26 84 chr13 43807613 43807753 -75937145 + MLT1K LTR MaLR 443 571 -17 1971 133 0 7 chr13 43807816 43808116 -75936782 - AluSx SINE Alu -14 298 1 311 216 0 40 chr13 43808160 43808234 -75936664 + FLAM SINE Alu 64 125 -8 823 145 8 8 chr13 43808245 43808376 -75936522 + FLAM_C SINE Alu 1 131 -12 371 319 17 17 chr13 43808387 43808506 -75936392 - L2 LINE L2 -4 3309 3191 277 232 42 53 chr13 43808601 43808696 -75936202 - L2 LINE L2 -1206 2108 2015 2318 75 0 0 chr13 43808735 43809029 -75935869 + AluSc SINE Alu 1 294 -15 216 67 0 0 chr13 43809240 43809270 -75935628 + (GA)n Simple_repeat Simple_repeat 1 30 0 432 0 0 0 chr13 43809270 43809318 -75935580 + (TG)n Simple_repeat Simple_repeat 2 49 0 388 276 32 87 chr13 43809655 43809840 -75935058 - MIR3 SINE MIR -4 204 30 449 312 39 34 chr13 43810484 43810689 -75934209 - MIR SINE MIR 0 262 57 348 259 24 0 chr13 43810796 43810881 -75934017 - MIR SINE MIR -110 152 66 1553 181 20 10 chr13 43810908 43811201 -75933697 - AluJb SINE Alu -16 296 1 579 245 86 0 chr13 43811250 43811389 -75933509 - MIR SINE MIR -5 257 107 2171 118 0 0 chr13 43811589 43811886 -75933012 + AluSx SINE Alu 2 298 -14 389 273 94 38 chr13 43812006 43812313 -75932585 + MLT1J LTR MaLR 219 542 0 416 266 133 73 chr13 43813008 43813377 -75931521 - MLT1K LTR MaLR -11 577 187 2321 87 0 0 chr13 43813414 43813712 -75931186 + AluSg SINE Alu 1 298 -12 1087 147 17 82 chr13 43814045 43814277 -75930621 - MER20 DNA MER1_type 0 219 3 424 265 70 76 chr13 43814546 43814653 -75930245 - MIR SINE MIR -70 192 85 1852 122 14 10 chr13 43814653 43814949 -75929949 + AluJb SINE Alu 1 297 -15 424 265 70 76 chr13 43814949 43815026 -75929872 - MIR SINE MIR -177 85 9 491 289 8 63 chr13 43815368 43815514 -75929384 + MIR3 SINE MIR 6 143 -65 1794 169 0 0 chr13 43815514 43815810 -75929088 - AluJo SINE Alu -15 297 2 491 289 8 63 chr13 43815810 43815853 -75929045 + MIR3 SINE MIR 143 187 -21 1581 141 74 27 chr13 43817057 43817355 -75927543 - AluJo SINE Alu 0 312 1 359 311 61 45 chr13 43817684 43817816 -75927082 + L2 LINE L2 3180 3313 0 276 291 0 13 chr13 43817868 43817947 -75926951 + L2 LINE L2 3235 3312 -1 224 308 13 0 chr13 43818536 43818614 -75926284 + CT-rich Low_complexity Low_complexity 4 82 0 1298 224 128 17 chr13 43819057 43819472 -75925426 - MLT1C LTR MaLR -1 466 6 1138 179 63 5 chr13 43819667 43819874 -75925024 + MER20 DNA MER1_type 1 219 0 1935 106 3 3 chr13 43820033 43820353 -75924545 - AluSx SINE Alu 0 320 1 3300 74 2 9 chr13 43820425 43820870 -75924028 - L1PA13 LINE L1 -2 6161 5720 281 336 63 45 chr13 43821069 43821481 -75923417 + L2 LINE L2 2851 3271 -1 2591 103 3 0 chr13 43821803 43822170 -75922728 + L1PA8 LINE L1 5805 6172 0 650 272 112 18 chr13 43822467 43822819 -75922079 + MLT1J LTR MaLR 51 476 -35 297 323 124 58 chr13 43823434 43823886 -75921012 - L2 LINE L2 0 3313 2832 231 36 0 0 chr13 43827255 43827283 -75917615 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 219 159 0 23 chr13 43828500 43828544 -75916354 + GA-rich Low_complexity Low_complexity 3 45 0 217 228 118 81 chr13 43828578 43828714 -75916184 - MIR SINE MIR -59 203 63 2024 108 11 4 chr13 43830043 43830346 -75914552 - AluSx SINE Alu 0 305 1 252 149 0 0 chr13 43830489 43830536 -75914362 + (TA)n Simple_repeat Simple_repeat 2 48 0 276 149 0 0 chr13 43830569 43830616 -75914282 + (CATA)n Simple_repeat Simple_repeat 2 48 0 201 74 0 0 chr13 43830913 43830940 -75913958 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 316 246 76 42 chr13 43831341 43831459 -75913439 - L1ME LINE L1 -473 5648 5527 496 306 32 0 chr13 43831649 43831806 -75913092 - MER91B DNA MER1_type 0 190 29 2149 149 0 3 chr13 43833096 43833405 -75911493 + AluSx SINE Alu 1 308 -4 1320 246 108 46 chr13 43833527 43833999 -75910899 + MER77 LTR ERV1 119 599 -6 284 218 36 0 chr13 43833973 43834028 -75910870 + MER21A LTR ERV1 682 738 -193 * 215 208 21 0 chr13 43834399 43834447 -75910451 + L2 LINE L2 3224 3272 0 463 129 82 0 chr13 43834516 43834601 -75910297 - L1MB7 LINE L1 -15 6169 6078 210 239 0 0 chr13 43835095 43835141 -75909757 - L2 LINE L2 -6 3307 3262 243 270 81 18 chr13 43835634 43835745 -75909153 - L2 LINE L2 -643 2671 2554 229 120 40 20 chr13 43835772 43835822 -75909076 + A-rich Low_complexity Low_complexity 3 53 0 273 119 0 0 chr13 43835874 43835916 -75908982 + (ATG)n Simple_repeat Simple_repeat 1 42 0 538 225 23 0 chr13 43835923 43836052 -75908846 - MIR SINE MIR -42 220 89 1333 114 19 215 chr13 43836221 43836625 -75908273 - AluJb SINE Alu 0 330 1 380 353 29 10 chr13 43836673 43836880 -75908018 - L3 LINE CR1 -1131 446 236 1966 152 0 0 chr13 43837287 43837617 -75907281 + AluSx SINE Alu 1 330 0 237 288 15 0 chr13 43837793 43837859 -75907039 + MIR3 SINE MIR 136 202 -6 1456 159 32 62 chr13 43838163 43838471 -75906427 - AluJo SINE Alu -13 299 1 23 54 0 0 chr13 43838712 43838749 -75906149 + AT_rich Low_complexity Low_complexity 1 37 0 2050 96 4 0 chr13 43838749 43839020 -75905878 + AluSq SINE Alu 1 272 -41 2377 49 0 3 chr13 43839022 43839307 -75905591 + AluY SINE Alu 17 300 -11 227 30 0 30 chr13 43839505 43839538 -75905360 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 652 0 0 0 chr13 43840180 43840253 -75904645 - tRNA-Glu-GAA tRNA tRNA -2 73 1 257 205 115 0 chr13 43840415 43840493 -75904405 + L2 LINE L2 2130 2216 -1098 2254 103 0 13 chr13 43841440 43841750 -75903148 + AluSx SINE Alu 1 306 -6 189 200 120 0 chr13 43841826 43841876 -75903022 - MIR SINE MIR -71 191 136 1667 150 15 11 chr13 43842289 43842563 -75902335 - AluJb SINE Alu -9 303 29 883 213 40 0 chr13 43842684 43842858 -75902040 - MER63A DNA MER1_type -2 208 28 2201 117 0 0 chr13 43843000 43843298 -75901600 + AluSx SINE Alu 1 298 -14 293 252 145 44 chr13 43843480 43843639 -75901259 + MER5A DNA MER1_type 15 189 0 255 292 52 0 chr13 43844130 43844226 -75900672 - L3b LINE CR1 -144 1439 1339 322 265 45 61 chr13 43844953 43845085 -75899813 + L2 LINE L2 3107 3236 -36 441 228 26 0 chr13 43845102 43845216 -75899682 - MIR SINE MIR -51 211 95 28 48 0 0 chr13 43845252 43845294 -75899604 + AT_rich Low_complexity Low_complexity 1 42 0 959 229 31 0 chr13 43846193 43846420 -75898478 - MIR SINE MIR 0 262 29 1462 271 124 27 chr13 43846917 43847836 -75897062 + L2 LINE L2 2294 3313 0 2500 175 49 68 chr13 43848547 43848840 -75896058 - MER89 LTR ERV1 0 559 262 1903 137 11 4 chr13 43848840 43849111 -75895787 + AluSx SINE Alu 1 273 -39 2389 84 0 3 chr13 43849121 43849418 -75895480 + AluSx SINE Alu 1 296 -16 2500 175 49 68 chr13 43849418 43849683 -75895215 - MER89 LTR ERV1 -306 253 1 2075 96 7 3 chr13 43849914 43850219 -75894679 + AluSx SINE Alu 1 306 0 2185 123 0 10 chr13 43851050 43851358 -75893540 + AluSq SINE Alu 1 305 -8 2325 100 3 6 chr13 43851587 43851898 -75893000 + AluSg SINE Alu 1 310 0 373 191 85 0 chr13 43852517 43852611 -75892287 + LTR50 LTR ERVL 57 158 -637 874 199 241 74 chr13 43852660 43852931 -75891967 + LTR50 LTR ERVL 292 517 -278 2099 123 3 0 chr13 43852931 43853231 -75891667 - AluSx SINE Alu -6 306 6 874 199 241 74 chr13 43853231 43853391 -75891507 + LTR50 LTR ERVL 517 795 0 1451 220 115 5 chr13 43853612 43853985 -75890913 - LTR40b LTR ERVL -47 415 2 2077 122 7 7 chr13 43854198 43854493 -75890405 - AluSx SINE Alu -12 300 6 301 308 92 46 chr13 43855125 43855472 -75889426 - L2 LINE L2 -32 3281 2919 746 193 7 0 chr13 43855812 43855957 -75888941 + MER5A DNA MER1_type 1 146 -43 312 248 188 27 chr13 43856007 43856156 -75888742 + MER5A DNA MER1_type 17 189 0 2156 120 0 3 chr13 43856604 43856913 -75887985 - AluSx SINE Alu 0 308 1 244 219 103 41 chr13 43857875 43858021 -75886877 + L1P LINE L1 5270 5424 -742 436 217 209 98 chr13 43858483 43858842 -75886056 - LTR37B LTR ERV1 -1 467 69 1234 164 14 10 chr13 43858857 43859064 -75885834 - AluSg/x SINE Alu -6 304 97 1365 130 30 0 chr13 43859086 43859286 -75885612 + MER1B DNA MER1_type 133 338 -1 2309 116 0 0 chr13 43859554 43859856 -75885042 + AluSx SINE Alu 5 306 -6 2294 100 37 0 chr13 43859883 43860183 -75884715 + AluSp SINE Alu 1 311 -2 1812 134 3 55 chr13 43860242 43860549 -75884349 + AluJo SINE Alu 6 296 -16 24 32 0 0 chr13 43860725 43860756 -75884142 + AT_rich Low_complexity Low_complexity 1 31 0 439 252 59 51 chr13 43860786 43861040 -75883858 + HAL1 LINE L1 1331 1586 -921 2621 53 0 0 chr13 43863764 43864067 -75880831 - AluY SINE Alu -8 303 1 1273 104 0 0 chr13 43864166 43864329 -75880569 - AluSp SINE Alu -17 296 134 1115 144 39 11 chr13 43865061 43865242 -75879656 + AluJo SINE Alu 117 302 -10 237 33 0 0 chr13 43865602 43865632 -75879266 + (CA)n Simple_repeat Simple_repeat 2 31 0 218 54 0 27 chr13 43865942 43865979 -75878919 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3479 245 106 14 chr13 43866172 43867976 -75876922 + L1MEc LINE L1 1732 3964 -2251 655 153 69 28 chr13 43868192 43868336 -75876562 + MIR SINE MIR 3 152 -110 2394 105 0 0 chr13 43869489 43869793 -75875105 - AluSx SINE Alu -8 304 1 185 220 271 0 chr13 43869801 43869860 -75875038 + MIR3 SINE MIR 109 183 -25 2204 118 10 0 chr13 43870391 43870696 -75874202 - AluSx SINE Alu -4 308 1 2885 0 0 0 chr13 43871454 43871755 -75873143 - AluYa5 SINE Alu -10 301 1 1951 147 0 7 chr13 43872610 43872902 -75871996 - AluSx SINE Alu -22 290 1 198 304 72 56 chr13 43873618 43873743 -75871155 - MIR SINE MIR -129 133 7 267 217 50 0 chr13 43873827 43873887 -75871011 + L2 LINE L2 1732 1794 -1520 2190 136 18 0 chr13 43873897 43874227 -75870671 - Tigger1 DNA MER2_type -4 2414 2079 343 281 98 37 chr13 43874227 43874391 -75870507 + L2 LINE L2 2955 3128 -185 1881 128 82 0 chr13 43874397 43874679 -75870219 - AluSx SINE Alu -7 305 1 4628 159 122 93 chr13 43874825 43875394 -75869504 - L1MD3 LINE L1 0 7995 7444 604 170 45 0 chr13 43875394 43875506 -75869392 - MLT1F1 LTR MaLR -445 122 6 4628 159 122 93 chr13 43875506 43876080 -75868818 - L1MD3 LINE L1 -551 7444 6705 207 0 0 0 chr13 43876266 43876289 -75868609 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1443 110 57 48 chr13 43877986 43878116 -75866782 + MER30 DNA MER1_type 1 135 -95 2625 30 7 3 chr13 43878116 43878420 -75866478 + AluY SINE Alu 1 305 -6 1443 110 57 48 chr13 43878420 43878517 -75866381 + MER30 DNA MER1_type 135 230 0 3157 129 30 55 chr13 43878596 43879137 -75865761 - MER1A DNA MER1_type 0 527 1 43 35 0 0 chr13 43879268 43879325 -75865573 + AT_rich Low_complexity Low_complexity 1 57 0 2242 128 0 0 chr13 43879460 43879766 -75865132 - AluSq SINE Alu -7 306 1 187 309 18 0 chr13 43880429 43880484 -75864414 + MIR SINE MIR 34 89 -173 368 127 0 0 chr13 43880496 43880551 -75864347 + MADE1 DNA Mariner 1 55 -25 226 296 207 7 chr13 43880552 43880687 -75864211 + MIR SINE MIR 101 262 0 205 301 98 16 chr13 43880706 43880829 -75864069 - L3 LINE CR1 -767 810 678 310 256 25 25 chr13 43882052 43882173 -75862725 + MER104 DNA Tc2 11 131 -49 2320 119 0 0 chr13 43882174 43882484 -75862414 - AluSg SINE Alu 0 310 1 2185 104 7 0 chr13 43882532 43882821 -75862077 - AluSx SINE Alu -21 291 1 1856 138 51 3 chr13 43883035 43883331 -75861567 + AluSq SINE Alu 1 310 -3 190 278 211 50 chr13 43883548 43883728 -75861170 + MIR SINE MIR 48 256 -6 500 212 66 47 chr13 43884338 43884557 -75860341 + L1ME1 LINE L1 2179 2359 -3856 * 558 242 45 0 chr13 43884547 43884704 -75860194 - L1M4 LINE L1 -1236 4910 4747 3014 179 78 0 chr13 43884741 43885295 -75859603 + MER7C DNA MER2_type 1 597 -5 858 234 97 42 chr13 43885392 43886052 -75858846 - L1M4 LINE L1 -1576 4570 3712 766 255 5 15 chr13 43886063 43886267 -75858631 - L1M4 LINE L1 -3651 2495 2294 585 255 68 36 chr13 43886266 43886544 -75858354 + L1ME1 LINE L1 4975 5261 -954 * 2694 265 42 23 chr13 43886528 43887259 -75857639 + L1MEc LINE L1 22 771 -5625 2360 107 44 41 chr13 43887259 43887622 -75857276 + THE1B LTR MaLR 1 364 0 2694 265 42 23 chr13 43887622 43887679 -75857219 + L1MEc LINE L1 771 825 -5571 2024 82 0 4 chr13 43887692 43887984 -75856914 + AluSc SINE Alu 25 315 0 274 234 85 43 chr13 43888356 43888450 -75856448 + MER5C DNA MER1_type 1 98 -226 2280 119 0 0 chr13 43888559 43888869 -75856029 - AluSx SINE Alu -2 310 1 2083 116 3 14 chr13 43888953 43889270 -75855628 + AluSx SINE Alu 8 312 0 1920 103 84 4 chr13 43889504 43889777 -75855121 + AluSg SINE Alu 1 295 -15 437 233 206 0 chr13 43890678 43890858 -75854040 + L3b LINE CR1 1117 1333 -250 202 260 179 32 chr13 43891089 43891212 -75853686 + L3b LINE CR1 1326 1466 -117 2181 118 7 3 chr13 43892924 43893230 -75851668 - AluSx SINE Alu -5 307 1 2266 201 77 23 chr13 43894347 43894909 -75849989 + L1ME1 LINE L1 5641 6232 -3 194 339 0 0 chr13 43896742 43896801 -75848097 - L2 LINE L2 -2506 808 750 1127 189 9 9 chr13 43896803 43897020 -75847878 - AluJo SINE Alu -9 303 87 789 324 119 31 chr13 43897240 43897940 -75846958 + L2 LINE L2 1927 2687 -627 631 188 8 34 chr13 43898537 43898798 -75846100 + GA-rich Low_complexity Low_complexity 1 253 0 1551 139 175 75 chr13 43898933 43899321 -75845577 - MSTC LTR MaLR -1 427 1 225 263 0 0 chr13 43899422 43899479 -75845419 - L2 LINE L2 -5 3308 3252 2067 125 14 0 chr13 43900021 43900308 -75844590 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr13 43901942 43901963 -75842935 + AT_rich Low_complexity Low_complexity 1 21 0 1197 125 60 10 chr13 43903440 43903640 -75841258 + Tigger2 DNA MER2_type 1 210 -2508 792 194 93 0 chr13 43903641 43903780 -75841118 + Tigger2 DNA MER2_type 2566 2717 -1 2215 108 3 3 chr13 43903784 43904089 -75840809 + AluSx SINE Alu 1 305 -7 29 0 0 0 chr13 43904446 43904475 -75840423 + AT_rich Low_complexity Low_complexity 1 29 0 1750 187 0 3 chr13 43904979 43905262 -75839636 + AluJo SINE Alu 1 282 -30 800 160 8 0 chr13 43905282 43905407 -75839491 - FLAM_C SINE Alu -6 127 2 1463 117 5 31 chr13 43905422 43905644 -75839254 - AluSq SINE Alu -12 301 86 333 138 0 0 chr13 43905745 43905803 -75839095 + Alu SINE Alu 244 301 -1 * 807 197 111 20 chr13 43905800 43905998 -75838900 + MSTD LTR MaLR 181 396 0 2059 150 0 3 chr13 43906346 43906659 -75838239 + AluSx SINE Alu 1 312 0 2964 58 0 0 chr13 43906697 43907042 -75837856 - L1PA3 LINE L1 -1 6154 5810 1043 238 91 9 chr13 43907090 43907409 -75837489 + L2 LINE L2 2193 2537 -777 3346 155 68 4 chr13 43907410 43907958 -75836940 + Tigger1 DNA MER2_type 2 584 -1834 795 222 14 0 chr13 43907962 43908106 -75836792 - FRAM SINE Alu -29 147 2 2922 97 11 36 chr13 43908139 43908397 -75836501 + Tigger1 DNA MER2_type 1495 1739 -679 2355 79 0 7 chr13 43908397 43908702 -75836196 + AluY SINE Alu 1 303 -8 2922 97 11 36 chr13 43908702 43908887 -75836011 + Tigger1 DNA MER2_type 1739 1927 -491 1186 154 13 60 chr13 43908887 43909083 -75835815 - AluJo SINE Alu -89 223 38 2122 118 16 10 chr13 43909083 43909389 -75835509 + AluSq SINE Alu 1 308 -5 1186 154 13 60 chr13 43909389 43909426 -75835472 - AluJo SINE Alu -274 38 1 731 113 77 186 chr13 43909426 43909647 -75835251 + Tigger1 DNA MER2_type 2220 2416 -2 1040 246 151 22 chr13 43909650 43910126 -75834772 + L2 LINE L2 2537 3128 -185 1778 103 0 109 chr13 43910126 43910465 -75834433 + AluSg1 SINE Alu 1 302 -7 1040 246 151 22 chr13 43910465 43910673 -75834225 + L2 LINE L2 3128 3308 -5 300 68 0 0 chr13 43910713 43910757 -75834141 + Tigger1 DNA MER2_type 1884 1927 -491 727 153 24 8 chr13 43910757 43910881 -75834017 - AluJo SINE Alu -89 223 98 245 316 223 14 chr13 43911945 43912160 -75832738 - MIR SINE MIR -1 261 2 291 280 42 109 chr13 43912342 43912535 -75832363 + L2 LINE L2 2986 3165 -107 2174 100 7 3 chr13 43912795 43913095 -75831803 + AluSx SINE Alu 1 301 -11 2498 67 0 0 chr13 43913155 43913452 -75831446 + AluSc SINE Alu 1 297 -12 1436 232 183 35 chr13 43913731 43914777 -75830121 - L1ME3A LINE L1 -168 6002 4809 * 4284 143 42 35 chr13 43914763 43915342 -75829556 - L1MB3 LINE L1 0 6183 5596 1614 105 23 139 chr13 43915342 43915686 -75829212 + AluYb8 SINE Alu 1 304 -14 4284 143 42 35 chr13 43915686 43915939 -75828959 - L1MB3 LINE L1 -587 5596 5346 1916 134 67 0 chr13 43915943 43916227 -75828671 + AluJo SINE Alu 1 303 -9 1603 56 15 10 chr13 43916289 43916486 -75828412 + AluSp SINE Alu 1 198 -115 221 378 73 7 chr13 43916492 43916643 -75828255 + L2 LINE L2 2882 3042 -230 2363 82 7 0 chr13 43916844 43917138 -75827760 - AluSp SINE Alu -15 298 3 196 353 63 19 chr13 43917145 43917158 -75827740 + L2 LINE L2 1988 1999 -1315 306 0 0 0 chr13 43917158 43917192 -75827706 + (CA)n Simple_repeat Simple_repeat 2 35 0 196 353 63 19 chr13 43917192 43917385 -75827513 + L2 LINE L2 1999 2203 -1111 512 204 0 0 chr13 43917593 43917681 -75827217 - MER81 DNA DNA -26 88 1 417 222 205 0 chr13 43917697 43917814 -75827084 - MER5A DNA MER1_type 0 189 49 189 94 0 0 chr13 43917814 43917846 -75827052 + (CTG)n Simple_repeat Simple_repeat 3 34 0 260 295 131 25 chr13 43917904 43918026 -75826872 + L2 LINE L2 3160 3294 -19 2009 165 0 0 chr13 43918061 43918358 -75826540 + AluJo SINE Alu 1 297 -15 406 328 231 20 chr13 43918610 43919553 -75825345 + L2 LINE L2 1024 3053 -219 330 95 0 0 chr13 43919627 43919669 -75825229 - Cheshire DNA MER1_type -2 2418 2377 250 304 0 63 chr13 43919669 43919748 -75825150 - MER2 DNA MER2_type 0 345 272 327 135 0 122 chr13 43919766 43919840 -75825058 - MER2 DNA MER2_type -280 65 1 1234 199 65 7 chr13 43919840 43920117 -75824781 - Cheshire DNA MER1_type -42 2378 2086 2322 101 0 0 chr13 43920443 43920739 -75824159 - AluSc SINE Alu -13 296 1 1392 186 18 46 chr13 43920998 43921278 -75823620 + AluJo SINE Alu 3 274 -38 207 139 0 0 chr13 43921278 43921314 -75823584 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 25 31 0 0 chr13 43921380 43921412 -75823486 + AT_rich Low_complexity Low_complexity 1 32 0 2691 93 14 3 chr13 43921887 43922251 -75822647 + THE1C LTR MaLR 8 375 0 551 310 35 58 chr13 43922251 43922539 -75822359 + L2 LINE L2 2264 2550 -764 2325 102 3 0 chr13 43922539 43922842 -75822056 - AluSx SINE Alu -8 304 1 551 310 35 58 chr13 43922842 43922900 -75821998 + L2 LINE L2 2550 2608 -706 2010 160 6 3 chr13 43923011 43923329 -75821569 + 7SLRNA srpRNA srpRNA 1 319 -1 1033 224 32 5 chr13 43923371 43923590 -75821308 - MIR SINE MIR -7 255 31 438 247 238 23 chr13 43923566 43923891 -75821007 + L2 LINE L2 2772 3177 -136 * 875 282 62 0 chr13 43923954 43924195 -75820703 + MIR SINE MIR 7 262 0 318 329 41 41 chr13 43924258 43924404 -75820494 + MER5A DNA MER1_type 41 186 -3 216 86 0 0 chr13 43924802 43924837 -75820061 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1571 172 0 34 chr13 43925518 43925814 -75819084 - AluJb SINE Alu -21 291 6 2239 137 0 3 chr13 43925950 43926263 -75818635 - AluSx SINE Alu 0 312 1 2316 101 0 3 chr13 43926606 43926912 -75817986 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr13 43926985 43927006 -75817892 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr13 43927084 43927109 -75817789 + (ATG)n Simple_repeat Simple_repeat 1 25 0 242 282 56 28 chr13 43927459 43927530 -75817368 - MIR SINE MIR -115 93 21 258 314 27 96 chr13 43927563 43927751 -75817147 + MIR SINE MIR 82 256 -6 525 190 127 7 chr13 43927957 43928099 -75816799 + MER58C DNA MER1_type 56 214 -1 30 27 0 0 chr13 43928733 43928770 -75816128 + AT_rich Low_complexity Low_complexity 1 37 0 286 330 32 21 chr13 43928860 43928954 -75815944 + MIR3 SINE MIR 4 98 -110 358 366 119 8 chr13 43930244 43930479 -75814419 - MIR SINE MIR 0 262 2 216 260 0 0 chr13 43930616 43930666 -75814232 - L2 LINE L2 0 3313 3264 1026 270 162 42 chr13 43930681 43931411 -75813487 + L2 LINE L2 2497 3313 0 264 356 64 75 chr13 43931406 43931566 -75813332 - L2 LINE L2 -76 3196 3036 * 1967 134 10 3 chr13 43931566 43931873 -75813025 + AluJo SINE Alu 1 309 -3 264 356 64 75 chr13 43931873 43932088 -75812810 - L2 LINE L2 -236 3036 2825 294 225 42 0 chr13 43932133 43932204 -75812694 + MIR SINE MIR 119 192 -70 2618 75 21 16 chr13 43932213 43932586 -75812312 - THE1C LTR MaLR 0 375 1 534 334 60 63 chr13 43932736 43933167 -75811731 + L1MEd LINE L1 12 441 -5678 279 228 19 152 chr13 43933168 43933379 -75811519 + L1MC4 LINE L1 7860 8042 0 255 277 96 11 chr13 43933737 43933831 -75811067 - MIR SINE MIR -2 260 159 445 274 59 113 chr13 43933955 43934363 -75810535 - MLT1L LTR MaLR -62 553 168 349 313 0 10 chr13 43934552 43934651 -75810247 - MIR SINE MIR -99 163 66 216 301 36 12 chr13 43935332 43935415 -75809483 + MIR SINE MIR 111 195 -67 426 302 62 17 chr13 43936664 43936843 -75808055 - MIR SINE MIR -70 192 6 2318 98 0 3 chr13 43937033 43937339 -75807559 + AluSx SINE Alu 1 305 -7 1539 134 90 60 chr13 43937495 43937794 -75807104 - AluJo SINE Alu -4 308 1 2480 71 0 0 chr13 43938980 43939274 -75805624 + AluY SINE Alu 3 296 -15 951 128 0 0 chr13 43939745 43940023 -75804875 + (TA)n Simple_repeat Simple_repeat 1 278 0 1984 132 3 3 chr13 43940023 43940310 -75804588 - AluSx SINE Alu -25 287 1 408 225 0 110 chr13 43940313 43940514 -75804384 - L1 LINE L1 -1817 4329 4151 2270 100 13 0 chr13 43940742 43941042 -75803856 - AluSx SINE Alu -7 305 2 21 0 0 0 chr13 43941118 43941139 -75803759 + AT_rich Low_complexity Low_complexity 1 21 0 783 182 0 0 chr13 43941317 43941438 -75803460 + FLAM_A SINE Alu 1 121 -12 630 247 133 0 chr13 43942366 43942516 -75802382 + FRAM SINE Alu 1 170 -6 409 164 35 17 chr13 43942553 43942669 -75802229 + L1M4 LINE L1 2894 3011 -3135 1159 228 101 68 chr13 43942733 43943289 -75801609 + L1ME2 LINE L1 5581 6154 -10 1518 180 3 40 chr13 43943612 43943912 -75800986 + AluJo SINE Alu 1 289 -23 22 0 0 0 chr13 43943913 43943935 -75800963 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 43944086 43944111 -75800787 + AT_rich Low_complexity Low_complexity 1 25 0 202 318 35 12 chr13 43944858 43944943 -75799955 - MER5A DNA MER1_type -42 147 61 549 0 0 0 chr13 43945009 43945070 -75799828 + (TG)n Simple_repeat Simple_repeat 2 62 0 423 0 0 0 chr13 43945124 43945171 -75799727 + (TG)n Simple_repeat Simple_repeat 2 48 0 2048 121 3 17 chr13 43945171 43945460 -75799438 - AluSx SINE Alu -27 285 1 1947 106 39 3 chr13 43945508 43945790 -75799108 + AluSg SINE Alu 1 292 -18 645 237 46 62 chr13 43945806 43945888 -75799010 - Charlie2a DNA MER1_type -611 2251 2169 794 106 0 0 chr13 43945888 43946001 -75798897 + L1PB3 LINE L1 6040 6152 -2 645 237 46 62 chr13 43946001 43946243 -75798655 - Charlie2a DNA MER1_type -693 2169 1932 229 247 67 45 chr13 43946285 43946374 -75798524 + MIR SINE MIR 124 214 -48 * 379 278 57 52 chr13 43946364 43946576 -75798322 - MIR SINE MIR -2 260 48 2364 81 7 0 chr13 43946635 43946931 -75797967 - AluSp SINE Alu -15 298 1 691 191 391 14 chr13 43946978 43947323 -75797575 - Charlie2a DNA MER1_type -915 1947 1473 1077 257 74 33 chr13 43947359 43947971 -75796927 - Charlie2b DNA MER1_type -2116 666 1 28 29 0 0 chr13 43948961 43948996 -75795902 + AT_rich Low_complexity Low_complexity 1 35 0 1806 159 28 10 chr13 43949343 43949633 -75795265 + AluJo SINE Alu 1 295 -17 2208 102 0 35 chr13 43949638 43949952 -75794946 + AluSx SINE Alu 10 312 0 22 56 0 0 chr13 43950637 43950673 -75794225 + AT_rich Low_complexity Low_complexity 1 36 0 2152 117 0 19 chr13 43951228 43951545 -75793353 - AluSx SINE Alu -1 311 1 2286 102 0 0 chr13 43951735 43952047 -75792851 + AluSq SINE Alu 1 312 0 1836 68 4 8 chr13 43953394 43953629 -75791269 + AluSx SINE Alu 64 297 -15 189 0 0 0 chr13 43954528 43954549 -75790349 + (GTTTG)n Simple_repeat Simple_repeat 4 24 0 405 255 122 0 chr13 43954711 43954809 -75790089 - L2 LINE L2 -1 3271 3162 406 277 164 38 chr13 43954815 43955162 -75789736 - L2 LINE L2 -49 3264 2874 209 344 0 16 chr13 43955221 43955282 -75789616 - L2 LINE L2 -182 3090 3031 1771 87 4 0 chr13 43955300 43955530 -75789368 - AluSg/x SINE Alu 0 312 82 2532 46 0 0 chr13 43955530 43955831 -75789067 - AluY SINE Alu -9 302 1 520 314 51 11 chr13 43956276 43956451 -75788447 + MER5A DNA MER1_type 8 189 0 747 183 0 8 chr13 43956461 43956592 -75788306 + AluJb SINE Alu 4 133 -179 1783 150 6 38 chr13 43957238 43957558 -75787340 + AluJo SINE Alu 1 310 -2 180 250 54 18 chr13 43958005 43958061 -75786837 - L3 LINE CR1 -586 991 934 357 179 40 168 chr13 43958523 43958997 -75785901 - MER5A DNA MER1_type 0 189 39 1985 146 17 7 chr13 43958603 43958905 -75785993 - AluSx SINE Alu -7 305 1 322 194 59 182 chr13 43958905 43959019 -75785879 + MER5A DNA MER1_type 97 185 -4 492 206 11 0 chr13 43959187 43959279 -75785619 + LTR67 LTR ERVL 92 184 -373 389 329 81 14 chr13 43959568 43959778 -75785120 + MIR SINE MIR 5 228 -34 320 195 23 46 chr13 43959885 43959960 -75784938 - MLT1K LTR MaLR -11 577 503 1458 153 71 46 chr13 43959960 43960103 -75784795 + AluJo SINE Alu 1 139 -173 2366 90 3 0 chr13 43960103 43960413 -75784485 + AluY SINE Alu 1 311 0 1458 153 71 46 chr13 43960413 43960550 -75784348 + AluJo SINE Alu 139 288 -24 320 195 23 46 chr13 43960550 43960561 -75784337 - MLT1K LTR MaLR -85 503 493 189 232 0 0 chr13 43960577 43960646 -75784252 + A-rich Low_complexity Low_complexity 1 69 0 1184 302 58 14 chr13 43960653 43961136 -75783762 - MLT1K LTR MaLR -71 517 14 278 232 29 14 chr13 43961899 43961968 -75782930 - MLT1K LTR MaLR -505 83 14 2091 133 0 0 chr13 43962171 43962465 -75782433 + AluSx SINE Alu 1 294 -18 2128 124 7 3 chr13 43962781 43963080 -75781818 + AluSx SINE Alu 1 300 -12 200 268 207 0 chr13 43963170 43963252 -75781646 - L2 LINE L2 -10 3303 3205 1804 159 0 26 chr13 43963790 43964092 -75780806 + AluJb SINE Alu 1 294 -18 2018 116 7 0 chr13 43964810 43965086 -75779812 + AluSq SINE Alu 1 278 -35 207 0 0 0 chr13 43965092 43965115 -75779783 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 231 263 93 25 chr13 43965170 43965288 -75779610 + L1M4 LINE L1 4877 5002 -1144 1933 137 3 0 chr13 43965292 43965577 -75779321 - AluSx SINE Alu -18 294 9 2271 104 3 0 chr13 43965713 43966012 -75778886 + AluSp SINE Alu 6 305 -8 348 247 86 46 chr13 43966016 43966243 -75778655 + L1M4 LINE L1 5121 5372 -784 2138 110 31 0 chr13 43966279 43966569 -75778329 - AluSg SINE Alu -9 301 3 234 338 130 56 chr13 43967424 43967458 -75777440 + L2 LINE L2 3004 3034 -238 2453 47 0 13 chr13 43967458 43967757 -75777141 + AluY SINE Alu 2 296 -15 234 338 130 56 chr13 43967757 43967953 -75776945 + L2 LINE L2 3034 3251 -21 405 216 56 40 chr13 43969470 43969595 -75775303 + MIR SINE MIR 54 180 -82 1520 188 34 13 chr13 43969762 43970060 -75774838 + AluJb SINE Alu 1 304 -8 1016 227 44 0 chr13 43970118 43970347 -75774551 - MIR SINE MIR -19 243 5 1878 100 55 11 chr13 43970696 43971003 -75773895 - AluSx SINE Alu 0 319 1 674 49 0 0 chr13 43971209 43971332 -75773566 - AluY SINE Alu 0 323 201 222 260 140 25 chr13 43971354 43971554 -75773344 + L2 LINE L2 1940 2162 -1152 2324 91 3 0 chr13 43972660 43972957 -75771941 - AluSx SINE Alu -14 298 1 231 167 48 0 chr13 43972960 43973002 -75771896 + MIR3 SINE MIR 154 197 -11 265 350 133 32 chr13 43973198 43973507 -75771391 - L2 LINE L2 0 3272 2933 1850 156 7 13 chr13 43973749 43974051 -75770847 - AluJo SINE Alu -1 311 12 594 191 28 14 chr13 43974847 43974988 -75769910 - LTR67 LTR ERVL -13 544 402 769 122 122 47 chr13 43975372 43975397 -75769501 + MER53 DNA DNA 5 27 -162 2052 146 0 3 chr13 43975397 43975692 -75769206 + AluSx SINE Alu 1 294 -18 769 122 122 47 chr13 43975692 43975838 -75769060 + MER53 DNA DNA 27 189 0 269 290 109 36 chr13 43976764 43976957 -75767941 + L2 LINE L2 2885 3091 -181 445 243 171 43 chr13 43977040 43977250 -75767648 + MLT1J LTR MaLR 40 276 -235 1819 123 4 19 chr13 43977413 43977537 -75767361 - AluSx SINE Alu -56 256 132 2169 116 17 3 chr13 43977537 43977839 -75767059 - AluSq SINE Alu -7 306 1 1819 123 4 19 chr13 43977839 43977974 -75766924 - AluSx SINE Alu -180 132 1 1562 117 0 5 chr13 43978244 43978449 -75766449 - AluSx SINE Alu -108 204 1 2279 104 3 28 chr13 43978774 43978809 -75766089 - AluSx SINE Alu -2 310 276 216 0 0 0 chr13 43978809 43978833 -75766065 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2279 104 3 28 chr13 43978833 43979115 -75765783 - AluSx SINE Alu -36 276 1 2092 133 7 3 chr13 43979367 43979660 -75765238 + AluSx SINE Alu 1 294 -18 515 272 153 40 chr13 43979665 43979966 -75764932 - L1MC4a LINE L1 -1895 5913 5579 421 271 43 29 chr13 43980463 43980603 -75764295 - L2 LINE L2 0 3313 3172 2272 185 40 2 chr13 43980632 43981076 -75763822 - L1MB3 LINE L1 -3 6180 5720 1161 129 77 138 chr13 43981095 43981272 -75763626 + AluJo SINE Alu 1 152 -160 967 111 0 183 chr13 43981272 43981507 -75763391 + 7SK RNA RNA 2 193 0 1161 129 77 138 chr13 43981507 43981640 -75763258 + AluJo SINE Alu 152 292 -20 702 160 0 38 chr13 43981861 43981992 -75762906 + AluJo/FLAM SINE Alu 1 126 -176 1293 173 0 5 chr13 43981992 43982206 -75762692 + AluJb SINE Alu 88 300 -12 2181 119 10 3 chr13 43982456 43982766 -75762132 + AluSx SINE Alu 1 312 0 2482 66 13 0 chr13 43983004 43983306 -75761592 - AluY SINE Alu -5 306 1 1784 158 3 7 chr13 43983777 43984091 -75760807 - AluJb SINE Alu 0 313 1 554 220 8 0 chr13 43984450 43984568 -75760330 + FLAM_A SINE Alu 4 122 -11 458 272 18 78 chr13 43984708 43984781 -75760117 + L2 LINE L2 2236 2312 -1002 2302 92 0 0 chr13 43984781 43985108 -75759790 - AluSq SINE Alu 0 327 1 458 272 18 78 chr13 43985108 43985250 -75759648 + L2 LINE L2 2312 2439 -875 182 289 97 26 chr13 43985249 43985363 -75759535 + L2 LINE L2 2915 3036 -236 * 933 109 92 27 chr13 43985702 43985875 -75759023 + L1M3 LINE L1 5428 5615 -556 2374 84 0 3 chr13 43985875 43986172 -75758726 + AluY SINE Alu 1 296 -15 2041 142 0 0 chr13 43986247 43986543 -75758355 - AluSx SINE Alu -16 296 1 189 94 0 0 chr13 43986548 43986580 -75758318 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 488 72 14 0 chr13 43986580 43986649 -75758249 - MER41A LTR ERV1 -86 468 399 957 105 8 0 chr13 43986696 43986820 -75758078 - FLAM_C SINE Alu -16 127 3 1513 183 84 44 chr13 43986929 43987312 -75757586 + L1MC4 LINE L1 7475 7872 -170 283 164 206 0 chr13 43987433 43987506 -75757392 + L1MC4 LINE L1 7919 8006 -36 2081 153 0 3 chr13 43987506 43987814 -75757084 - AluJb SINE Alu -5 307 1 1780 167 10 22 chr13 43987915 43988227 -75756671 + AluJb SINE Alu 1 308 -4 445 93 13 0 chr13 43988333 43988408 -75756490 + AluSp/q SINE Alu 232 307 -6 246 311 58 0 chr13 43988507 43988610 -75756288 - LTR67 LTR ERVL -18 539 431 2213 109 3 3 chr13 43989033 43989326 -75755572 + AluSx SINE Alu 6 298 -14 328 177 4 4 chr13 43989332 43989404 -75755494 - Alu SINE Alu -253 49 1 2176 134 0 3 chr13 43989749 43990062 -75754836 - AluSx SINE Alu 0 312 1 892 146 28 7 chr13 43991085 43991229 -75753669 + FRAM SINE Alu 11 157 -19 2008 127 38 0 chr13 43991229 43991520 -75753378 + AluSx SINE Alu 1 302 -10 585 214 18 0 chr13 43991645 43991757 -75753141 + FLAM_A SINE Alu 2 115 -18 1605 147 114 0 chr13 43991757 43992029 -75752869 - AluJb SINE Alu -9 303 1 1006 185 19 38 chr13 43992029 43992240 -75752658 - AluJb SINE Alu -10 302 96 3613 201 33 64 chr13 43992340 43992520 -75752378 + L1ME1 LINE L1 4847 5031 -1303 2096 115 7 33 chr13 43992520 43992824 -75752074 + AluSx SINE Alu 1 296 -16 3613 201 33 64 chr13 43992824 43992906 -75751992 + L1ME1 LINE L1 5031 5114 -1220 1422 175 48 28 chr13 43992906 43993197 -75751701 - AluJo SINE Alu -15 297 1 3613 201 33 64 chr13 43993197 43993343 -75751555 + L1ME1 LINE L1 5114 5263 -1071 2455 93 0 6 chr13 43993343 43993655 -75751243 + AluSg SINE Alu 1 310 0 3613 201 33 64 chr13 43993655 43994269 -75750629 + L1ME1 LINE L1 5263 5964 -370 1240 156 107 52 chr13 43994269 43994558 -75750340 + AluJb SINE Alu 1 305 -7 3613 201 33 64 chr13 43994558 43994918 -75749980 + L1ME1 LINE L1 5964 6334 0 2225 123 0 0 chr13 43994934 43995226 -75749672 + AluSx SINE Alu 1 292 -20 1757 141 0 11 chr13 43996172 43996442 -75748456 - AluSx SINE Alu -45 267 1 268 214 22 11 chr13 43996444 43996513 -75748385 + (TTTA)n Simple_repeat Simple_repeat 1 68 -331 1830 142 4 4 chr13 43996513 43996780 -75748118 - AluJb SINE Alu -45 267 1 268 214 22 11 chr13 43996780 43996839 -75748059 + (TTTA)n Simple_repeat Simple_repeat 68 399 0 1240 180 43 31 chr13 43997613 43997868 -75747030 - MLT1A2 LTR MaLR -92 282 25 612 256 33 56 chr13 43997900 43998115 -75746783 + LTR16A LTR ERVL 229 438 -12 299 206 75 109 chr13 43998157 43998303 -75746595 - MIR SINE MIR -51 211 77 2210 141 0 0 chr13 43998303 43998615 -75746283 + AluSx SINE Alu 1 312 0 299 206 75 109 chr13 43998615 43998655 -75746243 - MIR SINE MIR -185 77 37 357 24 0 0 chr13 43999266 43999308 -75745590 + (CA)n Simple_repeat Simple_repeat 2 43 0 26 74 0 0 chr13 43999671 43999725 -75745173 + AT_rich Low_complexity Low_complexity 1 54 0 1753 85 0 5 chr13 44000196 44000420 -75744478 - AluSc SINE Alu -4 305 83 951 301 76 22 chr13 44000614 44001022 -75743876 + L2 LINE L2 2883 3312 -1 2645 50 0 0 chr13 44001052 44001351 -75743547 + AluY SINE Alu 1 299 -12 353 284 11 11 chr13 44001354 44001449 -75743449 - MER5A DNA MER1_type -80 109 15 1791 172 7 3 chr13 44001449 44001751 -75743147 - AluJb SINE Alu -9 303 1 1935 142 0 43 chr13 44001823 44002125 -75742773 - AluSx SINE Alu -23 289 1 1439 202 73 89 chr13 44002312 44003217 -75741681 - LTR28 LTR ERV1 0 1020 1 1898 159 10 3 chr13 44003239 44003528 -75741370 - AluSx SINE Alu -21 291 1 2935 136 39 53 chr13 44003540 44004083 -75740815 - MER4D LTR ERV1 -368 535 1 305 173 25 49 chr13 44004086 44004167 -75740731 - MER92C LTR ERV1 -274 280 202 903 152 0 0 chr13 44004242 44004374 -75740524 + AluSg/x SINE Alu 165 296 -16 2064 114 11 32 chr13 44004374 44004422 -75740476 + MER4B LTR ERV1 313 360 -250 1116 166 257 4 chr13 44004422 44004663 -75740235 - AluJo SINE Alu 0 302 1 2064 114 11 32 chr13 44004663 44004819 -75740079 + MER4B LTR ERV1 360 436 -174 2012 119 57 33 chr13 44004819 44005154 -75739744 - MER61A LTR ERV1 0 343 1 2064 114 11 32 chr13 44005154 44005326 -75739572 + MER4B LTR ERV1 436 610 0 756 221 133 29 chr13 44005326 44005550 -75739348 + MER92C LTR ERV1 280 528 -26 183 42 0 0 chr13 44005550 44005574 -75739324 + (GA)n Simple_repeat Simple_repeat 2 25 0 583 245 40 44 chr13 44005578 44005760 -75739138 - MLT1F1 LTR MaLR -401 189 4 243 0 0 0 chr13 44006129 44006156 -75738742 + (A)n Simple_repeat Simple_repeat 1 27 0 2375 74 0 0 chr13 44006578 44006885 -75738013 - AluSq SINE Alu 0 307 1 1264 84 0 0 chr13 44007475 44007630 -75737268 + AluSg/x SINE Alu 132 286 -26 750 189 31 70 chr13 44007926 44008154 -75736744 + L1MC5 LINE L1 7144 7362 -599 2058 131 0 22 chr13 44008163 44008475 -75736423 + AluSx SINE Alu 1 305 -7 2108 93 29 0 chr13 44008475 44008753 -75736145 + AluSx SINE Alu 1 286 -26 330 240 10 31 chr13 44008859 44008955 -75735943 + AluSg/x SINE Alu 208 301 -1 452 301 16 27 chr13 44009724 44009910 -75734988 - MER5A DNA MER1_type 0 189 6 2094 146 3 7 chr13 44010026 44010335 -75734563 + AluJb SINE Alu 1 308 -4 227 333 40 0 chr13 44010663 44010762 -75734136 + MIR SINE MIR 141 243 -19 206 139 28 0 chr13 44011068 44011104 -75733794 + (CA)n Simple_repeat Simple_repeat 2 38 0 913 127 0 8 chr13 44011350 44011484 -75733414 - FLAM_C SINE Alu 0 133 1 809 204 18 24 chr13 44011492 44011659 -75733239 - FRAM SINE Alu 0 166 1 236 309 25 12 chr13 44011868 44011949 -75732949 - L2 LINE L2 -5 3267 3186 260 0 0 0 chr13 44011953 44011985 -75732913 + L1MA9 LINE L1 6274 6305 -7 266 306 39 105 chr13 44011999 44012362 -75732536 - L2 LINE L2 -107 3165 2827 263 289 128 50 chr13 44014068 44014248 -75730650 + L2 LINE L2 3120 3313 0 2281 108 0 10 chr13 44014831 44015137 -75729761 + AluSg SINE Alu 1 303 -7 529 119 0 48 chr13 44015485 44015569 -75729329 + AluSg/x SINE Alu 215 294 -18 952 119 0 179 chr13 44015571 44015806 -75729092 + 7SK RNA RNA 1 193 0 1972 152 0 7 chr13 44015823 44016125 -75728773 + AluJo SINE Alu 1 300 -12 21 0 0 0 chr13 44016267 44016288 -75728610 + AT_rich Low_complexity Low_complexity 1 21 0 1058 75 8 0 chr13 44016616 44016750 -75728148 - AluSq SINE Alu -69 244 110 24 0 0 0 chr13 44016943 44016967 -75727931 + AT_rich Low_complexity Low_complexity 1 24 0 1472 162 0 0 chr13 44017025 44017254 -75727644 + AluSg SINE Alu 64 292 -18 1839 158 3 7 chr13 44017254 44017561 -75727337 - AluJo SINE Alu 0 307 2 2123 124 0 3 chr13 44017889 44018179 -75726719 - AluJb SINE Alu -23 289 1 687 270 146 39 chr13 44018341 44018820 -75726078 - L2 LINE L2 -49 3264 2744 798 264 80 8 chr13 44018831 44019070 -75725828 + MIR SINE MIR 2 257 -5 3076 248 52 22 chr13 44019076 44019640 -75725258 - L2 LINE L2 -568 2746 2140 1896 63 178 0 chr13 44019640 44019893 -75725005 + AluSp SINE Alu 1 298 -15 3076 248 52 22 chr13 44019893 44020293 -75724605 - L2 LINE L2 -1174 2140 1753 1850 168 27 0 chr13 44020293 44020591 -75724307 + AluJb SINE Alu 1 306 -6 553 222 111 0 chr13 44020645 44020789 -75724109 + MIR SINE MIR 66 225 -37 1519 268 45 28 chr13 44020797 44021260 -75723638 - MLT1E LTR MaLR 0 593 123 1260 237 122 86 chr13 44021297 44021959 -75722939 - L2 LINE L2 -1720 1594 909 480 248 19 73 chr13 44021966 44022172 -75722726 + LTR4 LTR ERV1 2 196 -400 890 216 28 39 chr13 44022347 44022629 -75722269 + LTR4 LTR ERV1 318 596 0 303 216 45 9 chr13 44022629 44022740 -75722158 - L2 LINE L2 -2401 913 799 725 303 192 2 chr13 44022824 44023246 -75721652 + MLT1K LTR MaLR 76 577 -11 294 297 216 0 chr13 44023415 44023600 -75721298 + MIR SINE MIR 3 227 -35 2150 128 0 3 chr13 44023623 44023919 -75720979 - AluSx SINE Alu -13 299 5 2062 88 81 0 chr13 44023954 44024227 -75720671 - AluSg SINE Alu -15 295 1 183 216 114 91 chr13 44024451 44024539 -75720359 - MIR SINE MIR 0 262 173 1030 235 49 4 chr13 44024689 44024936 -75719962 + MIR SINE MIR 1 258 -4 260 324 39 0 chr13 44026000 44026102 -75718796 + L2 LINE L2 1803 1908 -1406 529 198 40 16 chr13 44026106 44026232 -75718666 - MLT1H LTR MaLR -2 547 419 545 229 78 42 chr13 44026302 44026494 -75718404 - MLT1H LTR MaLR -278 271 73 198 0 0 0 chr13 44026509 44026531 -75718367 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 713 97 29 0 chr13 44026532 44026635 -75718263 - U6 snRNA snRNA -1 106 1 1022 215 85 17 chr13 44026657 44026950 -75717948 + L2 LINE L2 1903 2215 -1099 1967 148 0 0 chr13 44027329 44027620 -75717278 - AluSx SINE Alu -21 291 1 854 262 55 61 chr13 44028140 44028483 -75716415 + L2 LINE L2 2946 3286 -27 1025 155 34 19 chr13 44028511 44028718 -75716180 + MER2 DNA MER2_type 1 210 -135 884 188 6 29 chr13 44028756 44028926 -75715972 - AluJo SINE Alu -146 166 1 309 258 0 0 chr13 44028935 44029001 -75715897 + MER2 DNA MER2_type 280 345 0 267 298 29 39 chr13 44029077 44029181 -75715717 + MIR SINE MIR 39 141 -67 234 343 0 29 chr13 44030217 44030322 -75714576 + MIR SINE MIR 111 212 -50 446 209 26 17 chr13 44030670 44030785 -75714113 - MER94 DNA DNA 0 134 19 2264 99 0 3 chr13 44031449 44031742 -75713156 - AluSx SINE Alu -20 292 1 790 320 84 36 chr13 44032069 44032460 -75712438 + L3 LINE CR1 845 1254 -323 519 236 174 0 chr13 44032603 44032747 -75712151 + MIR SINE MIR 2 170 -92 1956 158 0 3 chr13 44033246 44033538 -75711360 + AluSq SINE Alu 3 293 -20 2082 42 72 8 chr13 44033698 44033983 -75710915 - AluY SINE Alu 0 334 33 386 354 25 19 chr13 44034229 44034387 -75710511 + L3 LINE CR1 1009 1167 -410 1626 223 89 16 chr13 44034541 44034989 -75709909 - L1MC4 LINE L1 -1097 6945 6465 1797 187 0 10 chr13 44035488 44035793 -75709105 + AluJb SINE Alu 1 302 -10 366 222 10 10 chr13 44036786 44036885 -75708013 - Charlie8 DNA MER1_type -2212 205 107 245 217 33 0 chr13 44036920 44036980 -75707918 - MER103 DNA DNA -54 112 51 247 241 114 108 chr13 44037236 44037394 -75707504 + L2 LINE L2 3153 3311 -2 197 395 81 16 chr13 44037450 44037698 -75707200 + L2 LINE L2 2618 2881 -433 23 0 0 0 chr13 44038070 44038093 -75706805 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 44038252 44038278 -75706620 + AT_rich Low_complexity Low_complexity 1 26 0 1700 160 67 27 chr13 44038437 44038737 -75706161 + AluJb SINE Alu 1 312 0 279 280 91 23 chr13 44039804 44039936 -75704962 - L2 LINE L2 0 3313 3173 1094 123 0 0 chr13 44039971 44040117 -75704781 - AluSq/x SINE Alu -167 146 1 1984 152 15 0 chr13 44040255 44040590 -75704308 - L1PA16 LINE L1 -13 6153 5814 843 199 78 0 chr13 44040629 44040795 -75704103 - FAM SINE Alu -5 44 1 23 68 0 0 chr13 44040868 44040912 -75703986 + AT_rich Low_complexity Low_complexity 1 44 0 2393 86 3 0 chr13 44041185 44041488 -75703410 - AluSp SINE Alu -9 304 1 2423 42 3 29 chr13 44042285 44042591 -75702307 - AluY SINE Alu -13 298 1 191 190 52 17 chr13 44042840 44042898 -75702000 - L2 LINE L2 0 3313 3254 2271 116 3 0 chr13 44042973 44043276 -75701622 + AluSx SINE Alu 3 306 -6 352 271 181 8 chr13 44043903 44044036 -75700862 + MIR SINE MIR 107 262 0 816 142 47 0 chr13 44045247 44045374 -75699524 - FLAM_A SINE Alu 0 133 1 294 275 34 67 chr13 44045922 44046071 -75698827 - L2 LINE L2 -798 2516 2373 1248 263 77 40 chr13 44046131 44046835 -75698063 - L2 LINE L2 -1 3312 2567 1273 135 5 54 chr13 44046937 44047159 -75697739 - AluJo SINE Alu -101 211 1 2150 119 42 31 chr13 44047373 44047733 -75697165 + THE1B LTR MaLR 1 364 0 954 111 0 0 chr13 44048663 44048798 -75696100 - AluSx SINE Alu -9 301 167 342 68 232 4 chr13 44048808 44048877 -75696021 + AluSq/x SINE Alu 62 133 -169 1081 133 6 6 chr13 44048883 44049048 -75695850 - AluSx SINE Alu -147 165 1 231 175 0 0 chr13 44049354 44049394 -75695504 - Charlie1a DNA MER1_type -1 1454 1415 5055 196 43 29 chr13 44049425 44050642 -75694256 - Charlie1a DNA MER1_type -220 1235 2 2226 98 0 3 chr13 44050835 44051131 -75693767 + AluSq SINE Alu 1 295 -18 344 308 0 17 chr13 44051285 44051402 -75693496 - MIR SINE MIR -55 207 93 308 229 114 9 chr13 44052062 44052167 -75692731 - L1MC4 LINE L1 0 8042 7927 1566 102 0 5 chr13 44052613 44052828 -75692070 + AluSg/x SINE Alu 84 297 -13 24 32 0 0 chr13 44052875 44052906 -75691992 + AT_rich Low_complexity Low_complexity 1 31 0 1252 158 0 0 chr13 44053147 44053324 -75691574 + AluSx SINE Alu 1 177 -135 1575 135 9 0 chr13 44053342 44053572 -75691326 + AluSg/x SINE Alu 68 299 -11 1554 190 39 7 chr13 44053728 44054012 -75690886 + AluJb SINE Alu 1 293 -19 22 35 0 0 chr13 44054529 44054558 -75690340 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr13 44054586 44054608 -75690290 + (TA)n Simple_repeat Simple_repeat 2 23 0 457 186 0 0 chr13 44054608 44054678 -75690220 - AluS SINE Alu -17 294 225 625 216 22 89 chr13 44054879 44055079 -75689819 - L1MC5 LINE L1 -48 7913 7740 2454 87 0 0 chr13 44055079 44055388 -75689510 - AluSq SINE Alu -4 309 1 625 216 22 89 chr13 44055388 44055502 -75689396 - L1MC5 LINE L1 -221 7740 7620 1562 123 57 104 chr13 44056507 44056671 -75688227 - AluSx SINE Alu -10 302 159 2354 83 0 10 chr13 44056671 44056973 -75687925 - AluSc SINE Alu -10 299 1 1562 123 57 104 chr13 44056973 44057125 -75687773 - AluSx SINE Alu -153 159 1 37 0 0 0 chr13 44057471 44057508 -75687390 + AT_rich Low_complexity Low_complexity 1 37 0 735 112 9 0 chr13 44057739 44057846 -75687052 - AluSq/x SINE Alu -201 111 4 1565 139 57 60 chr13 44057852 44058220 -75686678 + MLT1B LTR MaLR 24 390 0 425 197 31 8 chr13 44058322 44058449 -75686449 - L1ME3A LINE L1 -5 6165 6036 23 33 0 0 chr13 44058679 44058709 -75686189 + AT_rich Low_complexity Low_complexity 1 30 0 1606 178 56 14 chr13 44058720 44059006 -75685892 - AluJo SINE Alu -14 298 1 2066 127 33 3 chr13 44059764 44060063 -75684835 - AluSx SINE Alu -4 308 1 2401 153 59 20 chr13 44060310 44060952 -75683946 - L1MB8 LINE L1 -9 6169 5413 2237 180 156 32 chr13 44061141 44061819 -75683079 - L1MB8 LINE L1 -845 5301 4540 3157 186 41 55 chr13 44061903 44062114 -75682784 - L1MD2 LINE L1 -1 6358 6145 243 0 0 0 chr13 44062114 44062141 -75682757 + (TG)n Simple_repeat Simple_repeat 2 28 0 3157 186 41 55 chr13 44062141 44062357 -75682541 - L1MD2 LINE L1 -214 6145 5927 2596 62 0 0 chr13 44062357 44062661 -75682237 - AluY SINE Alu -7 304 1 3157 186 41 55 chr13 44062661 44063044 -75681854 - L1MD2 LINE L1 -432 5927 5559 228 122 0 0 chr13 44063626 44063667 -75681231 + (CA)n Simple_repeat Simple_repeat 2 42 0 2043 100 3 7 chr13 44066036 44066335 -75678563 + L1PA12 LINE L1 5871 6168 0 21 71 0 0 chr13 44066427 44066469 -75678429 + AT_rich Low_complexity Low_complexity 1 42 0 212 323 0 16 chr13 44066472 44066534 -75678364 + L2 LINE L2 3248 3308 -5 1623 178 7 26 chr13 44068135 44068498 -75676400 - AluJb SINE Alu 0 357 1 1482 154 12 20 chr13 44068575 44068821 -75676077 + AluJo SINE Alu 1 244 -68 22 0 0 0 chr13 44068830 44068852 -75676046 + AT_rich Low_complexity Low_complexity 1 22 0 303 360 10 0 chr13 44068917 44069017 -75675881 - MIR SINE MIR -150 112 12 612 195 8 16 chr13 44069046 44069174 -75675724 + FLAM_A SINE Alu 4 130 -3 2359 195 21 87 chr13 44069296 44069698 -75675200 - MLT1E3 LTR MaLR 0 624 280 2382 111 0 0 chr13 44069698 44070005 -75674893 - AluSx SINE Alu -5 307 1 2359 195 21 87 chr13 44070005 44070254 -75674644 - MLT1E3 LTR MaLR -344 280 16 227 54 27 0 chr13 44071045 44071082 -75673816 + (TA)n Simple_repeat Simple_repeat 2 39 0 599 141 0 0 chr13 44071096 44071195 -75673703 + L1P5 LINE L1 5705 5803 -353 329 186 58 12 chr13 44071175 44071261 -75673637 + L1M4 LINE L1 3362 3451 -2695 * 654 221 15 36 chr13 44072063 44072258 -75672640 - L1MC5 LINE L1 -44 7917 7727 521 187 0 22 chr13 44072273 44072364 -75672534 + AluJ/FLAM SINE Alu 3 91 -221 1896 130 42 3 chr13 44072510 44072794 -75672104 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr13 44074940 44074962 -75669936 + AT_rich Low_complexity Low_complexity 1 22 0 45 104 0 0 chr13 44075139 44075303 -75669595 + AT_rich Low_complexity Low_complexity 1 164 0 35 63 0 0 chr13 44075484 44075547 -75669351 + AT_rich Low_complexity Low_complexity 1 63 0 883 272 91 33 chr13 44075705 44076296 -75668602 - L1ME LINE L1 -539 5903 5256 2015 133 9 19 chr13 44076296 44076611 -75668287 - AluSx SINE Alu 0 312 1 883 272 91 33 chr13 44076611 44076820 -75668078 - L1ME LINE L1 -1186 5256 5061 3015 165 17 4 chr13 44076864 44077338 -75667560 + Tigger7 DNA MER2_type 32 511 -222 615 276 111 42 chr13 44077401 44078027 -75666871 - L1MEd LINE L1 -4859 1567 1015 1116 225 65 98 chr13 44078263 44078721 -75666177 - MLT1H LTR MaLR -23 526 84 366 267 23 30 chr13 44078864 44078995 -75665903 + MER94 DNA DNA 5 134 0 277 281 134 61 chr13 44079361 44079838 -75665060 - HAL1b LINE L1 -252 1096 585 34 42 0 0 chr13 44080211 44080259 -75664639 + AT_rich Low_complexity Low_complexity 1 48 0 859 144 7 7 chr13 44080403 44080542 -75664356 + AluJb SINE Alu 3 141 -171 33 66 0 0 chr13 44080949 44081010 -75663888 + AT_rich Low_complexity Low_complexity 1 61 0 1274 133 225 4 chr13 44081681 44081921 -75662977 - AluSg1 SINE Alu -16 293 1 386 254 231 8 chr13 44082631 44082765 -75662133 + MIR SINE MIR 2 165 -97 854 268 131 40 chr13 44082790 44083219 -75661679 - MLT1J LTR MaLR -43 468 1 234 260 10 73 chr13 44083221 44083317 -75661581 + MIR SINE MIR 161 250 -12 1741 150 11 11 chr13 44083372 44083646 -75661252 - AluSx SINE Alu -4 308 35 914 121 8 8 chr13 44083922 44084054 -75660844 - FRAM SINE Alu -21 155 24 1585 162 20 40 chr13 44084342 44084644 -75660254 - AluJb SINE Alu -16 296 1 906 135 195 0 chr13 44085067 44085252 -75659646 + L1MA8 LINE L1 6066 6286 -5 2203 118 0 0 chr13 44085502 44085798 -75659100 - AluSx SINE Alu -16 296 1 2222 108 0 16 chr13 44085800 44086114 -75658784 - AluSg SINE Alu -1 309 1 24 0 0 0 chr13 44086141 44086165 -75658733 + AT_rich Low_complexity Low_complexity 1 24 0 883 146 0 0 chr13 44086631 44086754 -75658144 + FLAM_C SINE Alu 1 123 -20 38 0 0 0 chr13 44086755 44086793 -75658105 + AT_rich Low_complexity Low_complexity 1 38 0 1994 142 10 3 chr13 44087433 44087729 -75657169 - AluSx SINE Alu -14 298 1 489 279 49 44 chr13 44088084 44088288 -75656610 - MIR SINE MIR -50 212 8 6028 62 11 1 chr13 44088432 44089159 -75655739 - L1PA6 LINE L1 -1 6153 5420 224 333 82 53 chr13 44089678 44089885 -75655013 + L2 LINE L2 2845 3057 -215 296 250 188 0 chr13 44090019 44090131 -75654767 - MER112 DNA MER1_type -97 163 31 248 277 67 42 chr13 44090177 44090224 -75654674 + L2 LINE L2 3151 3195 -77 291 93 0 0 chr13 44090224 44090267 -75654631 + (CA)n Simple_repeat Simple_repeat 2 44 0 248 277 67 42 chr13 44090267 44090338 -75654560 + L2 LINE L2 3195 3272 0 505 257 107 27 chr13 44090815 44091002 -75653896 + MIR SINE MIR 42 243 -19 216 232 111 61 chr13 44091632 44091731 -75653167 + MIR SINE MIR 41 144 -64 722 240 36 58 chr13 44093005 44093223 -75651675 - MLT1A1 LTR MaLR 0 374 160 2268 97 7 16 chr13 44093223 44093533 -75651365 - AluSq SINE Alu -6 307 1 369 0 0 0 chr13 44093539 44093580 -75651318 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1510 144 67 42 chr13 44093639 44093923 -75650975 - AluJo SINE Alu 0 312 22 928 150 6 12 chr13 44093952 44094112 -75650786 - MLT1A1 LTR MaLR -206 159 1 257 265 36 0 chr13 44094241 44094324 -75650574 - L2 LINE L2 -111 3202 3117 2123 106 3 7 chr13 44094694 44094987 -75649911 + AluSx SINE Alu 1 292 -20 232 177 21 125 chr13 44094988 44095084 -75649814 + L1MCa LINE L1 1995 2080 -4346 492 297 53 65 chr13 44095097 44095405 -75649493 + L1MCa LINE L1 2434 2739 -3687 2301 98 166 5 chr13 44095405 44095772 -75649126 - MSTA LTR MaLR 0 428 3 492 297 53 65 chr13 44095772 44095803 -75649095 + L1MCa LINE L1 2739 2769 -3657 1301 79 6 0 chr13 44095843 44096007 -75648891 - AluSp SINE Alu -13 300 136 647 83 9 46 chr13 44096008 44096117 -75648781 + MER11A LTR ERVK 1161 1265 -1 514 235 10 0 chr13 44096141 44096239 -75648659 - L2 LINE L2 -6 3307 3209 392 270 59 2 chr13 44096239 44096387 -75648511 + L1ME1 LINE L1 5940 6104 -74 322 306 118 12 chr13 44096393 44096638 -75648260 - L2 LINE L2 -108 3205 2935 397 289 93 61 chr13 44096675 44096693 -75648205 + L1MCa LINE L1 3352 3368 -3058 2242 112 7 0 chr13 44096693 44096996 -75647902 + AluSg SINE Alu 1 305 -5 397 289 93 61 chr13 44096996 44097243 -75647655 + L1MCa LINE L1 3368 3605 -2821 2440 80 0 0 chr13 44097243 44097545 -75647353 + AluSc SINE Alu 1 302 -7 397 289 93 61 chr13 44097545 44097952 -75646946 + L1MCa LINE L1 3605 4047 -2379 2440 90 0 0 chr13 44097988 44098289 -75646609 + AluSc SINE Alu 1 301 -8 1146 125 0 28 chr13 44098289 44098456 -75646442 + AluSg/x SINE Alu 136 299 -13 1571 195 42 0 chr13 44098525 44098812 -75646086 + AluJb SINE Alu 1 299 -13 848 237 31 77 chr13 44098892 44099206 -75645692 + L1MC4a LINE L1 5543 5694 -468 2288 99 7 3 chr13 44099206 44099509 -75645389 + AluSq SINE Alu 1 304 -9 848 237 31 77 chr13 44099509 44099624 -75645274 + L1MC4a LINE L1 5694 5813 -349 1776 140 51 10 chr13 44100318 44100610 -75644288 + AluSx SINE Alu 1 304 -8 212 373 27 27 chr13 44100698 44100848 -75644050 - L2 LINE L2 -498 2816 2667 224 0 65 0 chr13 44101788 44101819 -75643079 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 818 169 0 15 chr13 44101998 44102128 -75642770 - FLAM_C SINE Alu -3 130 3 1013 223 125 75 chr13 44103124 44103326 -75641572 + MLT1D LTR MaLR 1 191 -314 2094 111 20 7 chr13 44103326 44103623 -75641275 + AluSx SINE Alu 1 301 -11 1013 223 125 75 chr13 44103623 44103650 -75641248 + MLT1D LTR MaLR 191 215 -290 2119 128 3 0 chr13 44103650 44103948 -75640950 + AluSx SINE Alu 1 299 -13 1013 223 125 75 chr13 44103948 44104198 -75640700 + MLT1D LTR MaLR 215 505 0 275 304 43 9 chr13 44104198 44104313 -75640585 + L2 LINE L2 2966 3084 -188 2146 109 0 0 chr13 44104890 44105208 -75639690 + AluSx SINE Alu 1 318 0 276 308 78 67 chr13 44105667 44105785 -75639113 + L1ME LINE L1 5531 5646 -475 1895 164 3 3 chr13 44105785 44106072 -75638826 + AluJb SINE Alu 1 287 -25 276 308 78 67 chr13 44106072 44106297 -75638601 + L1ME LINE L1 5646 5878 -243 333 295 75 75 chr13 44106713 44106777 -75638121 + L2 LINE L2 2650 2713 -601 2046 137 6 10 chr13 44106777 44107090 -75637808 + AluSx SINE Alu 1 312 0 333 295 75 75 chr13 44107090 44107293 -75637605 + L2 LINE L2 2712 2917 -397 1915 176 52 55 chr13 44107722 44107838 -75637060 - MLT1C LTR MaLR -4 463 348 2265 86 0 0 chr13 44107838 44108141 -75636757 + AluSg SINE Alu 1 303 0 1915 176 52 55 chr13 44108141 44108482 -75636416 - MLT1C LTR MaLR -119 348 6 1521 133 4 9 chr13 44108552 44108777 -75636121 - AluSx SINE Alu -88 224 1 423 200 0 0 chr13 44108827 44108902 -75635996 - MLT1A1 LTR MaLR 0 365 291 1011 126 0 0 chr13 44108902 44109037 -75635861 + AluSq/x SINE Alu 1 135 -178 2100 104 3 42 chr13 44109037 44109346 -75635552 + AluSg SINE Alu 1 297 -13 1190 246 63 0 chr13 44109346 44109614 -75635284 - MLT1A1 LTR MaLR -79 286 2 1428 192 23 23 chr13 44109983 44110143 -75634755 - AluJo SINE Alu -5 307 145 2090 120 23 3 chr13 44110143 44110442 -75634456 - AluSg SINE Alu -5 305 1 1428 192 23 23 chr13 44110442 44110583 -75634315 - AluJo SINE Alu -166 146 6 1838 147 3 11 chr13 44110852 44111167 -75633731 - AluSx SINE Alu 0 313 1 362 193 67 80 chr13 44111268 44111418 -75633480 + L1MC5 LINE L1 7507 7654 -307 863 85 0 0 chr13 44111418 44111524 -75633374 + AluSp SINE Alu 1 106 -207 25 51 0 0 chr13 44112565 44112604 -75632294 + AT_rich Low_complexity Low_complexity 1 39 0 1934 136 0 33 chr13 44114262 44114564 -75630334 + AluSx SINE Alu 1 292 -20 1786 156 3 35 chr13 44114567 44114882 -75630016 + AluJb SINE Alu 1 305 -7 245 299 9 169 chr13 44115344 44115575 -75629323 + L2 LINE L2 3027 3220 -52 2378 92 0 0 chr13 44115654 44115957 -75628941 + AluSg SINE Alu 2 304 -6 789 241 64 15 chr13 44116077 44116452 -75628446 + LTR16A LTR ERVL 7 450 0 2274 92 0 25 chr13 44116581 44116898 -75628000 + AluSc SINE Alu 1 309 0 299 284 23 0 chr13 44116974 44117062 -75627836 + MIR SINE MIR 90 179 -83 1029 110 0 85 chr13 44117222 44117338 -75627560 + AluSq/x SINE Alu 1 101 -211 2124 133 0 3 chr13 44117338 44117647 -75627251 + AluSg SINE Alu 1 308 -2 1029 110 0 85 chr13 44117647 44117694 -75627204 + AluSq/x SINE Alu 101 150 -162 739 87 0 0 chr13 44117694 44117786 -75627112 - AluS SINE Alu -220 93 2 1030 119 0 179 chr13 44117804 44118039 -75626859 - 7SK RNA RNA 0 193 1 522 143 0 48 chr13 44118041 44118125 -75626773 - AluSg/x SINE Alu -18 292 213 22 0 0 0 chr13 44119100 44119122 -75625776 + AT_rich Low_complexity Low_complexity 1 22 0 37 0 0 0 chr13 44121658 44121695 -75623203 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr13 44121944 44121966 -75622932 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 808 169 0 0 chr13 44122247 44122371 -75622527 - AluJb SINE Alu -188 124 1 183 381 79 8 chr13 44122641 44122767 -75622131 - MIR3 SINE MIR -38 170 36 1891 147 0 39 chr13 44123630 44123942 -75620956 + AluSx SINE Alu 1 300 -12 565 195 47 13 chr13 44126426 44126575 -75618323 + MER104 DNA Tc2 25 178 -2 23 33 0 0 chr13 44126715 44126745 -75618153 + AT_rich Low_complexity Low_complexity 1 30 0 1323 167 126 15 chr13 44126745 44127008 -75617890 - AluJo SINE Alu -19 293 2 442 272 105 25 chr13 44127866 44128028 -75616870 - MIR3 SINE MIR -23 185 11 236 183 33 50 chr13 44128116 44128176 -75616722 - MLT1K LTR MaLR -10 578 520 2155 103 0 0 chr13 44128520 44128821 -75616077 + AluSx SINE Alu 1 301 0 1956 120 0 31 chr13 44129086 44129401 -75615497 + AluSx SINE Alu 1 306 0 1661 173 0 28 chr13 44129517 44129800 -75615098 - AluSx SINE Alu -37 275 1 603 193 0 52 chr13 44130309 44130444 -75614454 + Charlie1 DNA MER1_type 1 128 -2633 241 218 69 11 chr13 44130443 44130530 -75614368 + Charlie1 DNA MER1_type 2625 2716 -45 * 518 123 38 0 chr13 44130565 44130671 -75614227 - L1MA7 LINE L1 -2 6289 6180 270 279 81 9 chr13 44130706 44130817 -75614081 + L2 LINE L2 3193 3311 -2 23 33 0 0 chr13 44130945 44130975 -75613923 + AT_rich Low_complexity Low_complexity 1 30 0 1601 124 161 24 chr13 44131528 44131858 -75613040 - THE1C LTR MaLR 0 375 1 2173 112 3 3 chr13 44131930 44132233 -75612665 - AluSc SINE Alu -6 303 1 26 50 0 0 chr13 44132456 44132496 -75612402 + AT_rich Low_complexity Low_complexity 1 40 0 407 290 57 0 chr13 44132760 44132884 -75612014 + L2 LINE L2 3137 3267 -5 387 41 0 0 chr13 44133410 44133459 -75611439 + (CA)n Simple_repeat Simple_repeat 1 49 0 1376 189 128 4 chr13 44134290 44134555 -75610343 + AluSx SINE Alu 1 298 -14 382 321 0 9 chr13 44134871 44134980 -75609918 - L2 LINE L2 -19 3294 3187 941 131 199 0 chr13 44135612 44135843 -75609055 + Tigger3(Golem) DNA MER2_type 54 3029 0 2081 255 83 65 chr13 44136084 44137135 -75607763 + L2 LINE L2 2246 3313 0 239 354 157 22 chr13 44137121 44137440 -75607458 - L2 LINE L2 -450 2864 2503 * 22 35 0 0 chr13 44137777 44137806 -75607092 + AT_rich Low_complexity Low_complexity 1 29 0 889 134 0 0 chr13 44137840 44137984 -75606914 - FLAM_C SINE Alu 0 144 1 2203 99 7 0 chr13 44138002 44138296 -75606602 - AluSp SINE Alu -12 301 6 290 138 17 0 chr13 44138372 44138430 -75606468 + (CA)n Simple_repeat Simple_repeat 2 60 0 960 137 6 19 chr13 44138840 44139156 -75605742 - AluSq SINE Alu 0 439 126 2051 137 0 0 chr13 44139157 44139457 -75605441 - AluSx SINE Alu -12 300 1 234 0 0 0 chr13 44139460 44139486 -75605412 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2281 97 0 3 chr13 44139490 44139790 -75605108 - AluY SINE Alu -8 303 5 231 236 36 0 chr13 44139986 44140041 -75604857 + L2 LINE L2 3179 3235 -78 238 203 17 34 chr13 44140041 44140100 -75604798 + CT-rich Low_complexity Low_complexity 3 60 0 22 0 0 0 chr13 44140187 44140209 -75604689 + AT_rich Low_complexity Low_complexity 1 22 0 593 206 125 25 chr13 44141488 44141648 -75603250 + MER46A DNA MER2_type 1 176 -60 334 197 0 0 chr13 44141684 44141745 -75603153 + MER94 DNA DNA 1 61 -73 2086 112 14 7 chr13 44141893 44142188 -75602710 + AluSx SINE Alu 1 297 -15 1442 136 140 11 chr13 44142385 44142650 -75602248 + AluJb SINE Alu 1 299 -13 1979 140 3 7 chr13 44142925 44143233 -75601665 - AluSx SINE Alu -5 307 1 183 358 8 41 chr13 44143285 44143408 -75601490 + L2 LINE L2 2831 2949 -323 2327 97 0 0 chr13 44143434 44143732 -75601166 + AluSg1 SINE Alu 1 298 -11 229 200 127 0 chr13 44143872 44143927 -75600971 + L2 LINE L2 3137 3198 -74 521 206 0 10 chr13 44144714 44144811 -75600087 - MER91B DNA MER1_type -4 186 91 242 174 217 0 chr13 44144828 44144897 -75600001 - MER91B DNA MER1_type -60 130 47 413 310 35 9 chr13 44145599 44145712 -75599186 - MIR SINE MIR -116 146 31 441 297 8 31 chr13 44146417 44146545 -75598353 + L2 LINE L2 3188 3312 -1 234 302 0 0 chr13 44146705 44146758 -75598140 - L2 LINE L2 0 3313 3261 764 244 84 65 chr13 44147321 44147349 -75597549 + L2 LINE L2 2178 2204 -1110 351 44 0 0 chr13 44147349 44147394 -75597504 + (TG)n Simple_repeat Simple_repeat 2 46 0 764 244 84 65 chr13 44147394 44147734 -75597164 + L2 LINE L2 2204 2553 -761 784 219 16 44 chr13 44147773 44147845 -75597053 - MER45A DNA AcHobo -1403 178 106 428 120 13 0 chr13 44147845 44147920 -75596978 + L1PB2 LINE L1 6069 6144 -7 784 219 16 44 chr13 44147920 44148030 -75596868 - MER45A DNA AcHobo -1475 106 1 577 324 168 34 chr13 44148030 44148644 -75596254 + L2 LINE L2 2606 3313 0 198 333 204 0 chr13 44149087 44149180 -75595718 - L2 LINE L2 -7 3265 3154 686 174 25 8 chr13 44149289 44149410 -75595488 + AluJ SINE Alu 1 123 -179 912 170 19 22 chr13 44149459 44149702 -75595196 + AluJ SINE Alu 104 309 -3 299 310 60 0 chr13 44151303 44151403 -75593495 - L2 LINE L2 -9 3304 3199 608 286 11 27 chr13 44151409 44151594 -75593304 - MER5A DNA MER1_type -1 188 7 943 143 54 24 chr13 44151882 44152050 -75592848 + AluSq SINE Alu 134 306 -7 650 300 112 36 chr13 44152810 44153303 -75591595 - L1M4 LINE L1 -1250 4896 4367 1336 146 5 41 chr13 44153308 44153527 -75591371 + AluJb SINE Alu 84 294 -18 249 180 81 10 chr13 44153866 44153962 -75590936 + L1MA9 LINE L1 6213 6333 -1 264 48 0 0 chr13 44154699 44154741 -75590157 - AluSp/q SINE Alu -3 300 259 2352 97 3 0 chr13 44155085 44155385 -75589513 - AluSp SINE Alu -12 301 1 1520 88 0 5 chr13 44155406 44155598 -75589300 - AluSq SINE Alu -122 191 1 2309 107 0 7 chr13 44156349 44156658 -75588240 + AluSx SINE Alu 1 307 -5 2299 103 3 7 chr13 44157469 44157820 -75587078 - AluSg SINE Alu 0 350 1 2051 144 3 26 chr13 44158760 44159072 -75585826 + AluJo SINE Alu 1 305 -7 821 211 68 0 chr13 44159521 44159682 -75585216 + FAM SINE Alu 1 172 -3 1960 161 3 0 chr13 44160047 44160351 -75584547 + AluJb SINE Alu 1 305 -7 26 50 0 0 chr13 44160978 44161018 -75583880 + AT_rich Low_complexity Low_complexity 1 40 0 2291 86 23 7 chr13 44161185 44161487 -75583411 + AluSp SINE Alu 7 313 0 32 26 0 0 chr13 44161671 44161710 -75583188 + AT_rich Low_complexity Low_complexity 1 39 0 2048 117 3 49 chr13 44161995 44162320 -75582578 - AluSx SINE Alu -2 310 1 393 22 0 0 chr13 44162899 44162945 -75581953 + (CA)n Simple_repeat Simple_repeat 1 46 0 416 306 166 5 chr13 44163904 44164103 -75580795 - MIR SINE MIR 0 262 32 1883 154 0 3 chr13 44164364 44164670 -75580228 - AluSx SINE Alu 0 305 1 2513 83 3 0 chr13 44165078 44165390 -75579508 + AluSp SINE Alu 1 313 0 203 337 36 12 chr13 44166292 44166375 -75578523 + MIR SINE MIR 42 126 -82 234 0 0 0 chr13 44166517 44166543 -75578355 + (T)n Simple_repeat Simple_repeat 1 26 0 2284 110 0 0 chr13 44166961 44167261 -75577637 + AluSq SINE Alu 1 300 -13 1585 163 3 72 chr13 44167275 44167594 -75577304 + AluJb SINE Alu 3 299 -13 198 0 0 0 chr13 44167600 44167622 -75577276 + (TA)n Simple_repeat Simple_repeat 2 23 0 479 254 30 66 chr13 44167628 44167825 -75577073 + MER102b DNA MER1_type 149 338 -3 1007 163 58 0 chr13 44167830 44168020 -75576878 + MER3 DNA MER1_type 4 204 -5 192 265 217 24 chr13 44168222 44168305 -75576593 - L2 LINE L2 -18 3295 3197 222 37 0 0 chr13 44168669 44168696 -75576202 + (T)n Simple_repeat Simple_repeat 1 27 0 196 304 0 0 chr13 44169179 44169235 -75575663 - L2 LINE L2 0 3313 3258 1032 143 9 67 chr13 44169496 44169634 -75575264 + MER2 DNA MER2_type 1 123 -222 1854 144 37 18 chr13 44169634 44169961 -75574937 + MER1B DNA MER1_type 1 333 -4 1032 143 9 67 chr13 44169961 44170045 -75574853 + MER2 DNA MER2_type 123 210 -135 2306 104 0 0 chr13 44170077 44170376 -75574522 - AluSx SINE Alu -13 299 1 243 320 0 0 chr13 44170385 44170463 -75574435 + MER2 DNA MER2_type 268 345 0 253 242 21 63 chr13 44170768 44170863 -75574035 + MIR SINE MIR 172 262 0 2170 107 31 3 chr13 44171087 44171378 -75573520 - AluSx SINE Alu -13 299 1 2303 117 17 47 chr13 44171715 44172082 -75572816 - L1PB1 LINE L1 0 6151 5796 363 44 0 0 chr13 44172082 44172127 -75572771 + (TA)n Simple_repeat Simple_repeat 1 45 0 2303 117 17 47 chr13 44172127 44172162 -75572736 - L1PB1 LINE L1 -355 5796 5761 688 68 0 0 chr13 44172184 44172272 -75572626 + AluY SINE Alu 110 197 -114 2059 120 23 3 chr13 44172402 44172702 -75572196 - AluSg SINE Alu -4 306 1 2187 118 0 0 chr13 44172867 44173156 -75571742 - AluSg SINE Alu -21 289 1 241 91 18 18 chr13 44173411 44173466 -75571432 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 2411 82 0 13 chr13 44173472 44173789 -75571109 - AluSq SINE Alu 0 313 1 24 53 0 0 chr13 44174366 44174404 -75570494 + AT_rich Low_complexity Low_complexity 1 38 0 1975 136 37 0 chr13 44175065 44175359 -75569539 - AluSx SINE Alu -7 305 1 333 286 13 0 chr13 44175545 44175622 -75569276 + L2 LINE L2 3234 3311 -2 1126 138 37 43 chr13 44177163 44177351 -75567547 - AluJb SINE Alu -19 293 107 378 177 0 0 chr13 44177384 44177446 -75567452 + MER3 DNA MER1_type 1 62 -147 2066 178 15 32 chr13 44178110 44178510 -75566388 + Tigger6 DNA MER2_type 1205 1597 0 2441 196 16 64 chr13 44178512 44178807 -75566091 + MER44D DNA MER2_type 1 311 -2176 2196 66 43 26 chr13 44178807 44179110 -75565788 + AluY SINE Alu 1 308 -3 2441 196 16 64 chr13 44179110 44179392 -75565506 + MER44D DNA MER2_type 311 605 0 617 268 142 0 chr13 44179486 44179691 -75565207 - MIR SINE MIR -27 235 2 2415 88 3 0 chr13 44179898 44180204 -75564694 + AluSq SINE Alu 1 307 -6 250 196 19 149 chr13 44180302 44180409 -75564489 - MER102a DNA MER1_type -15 315 223 616 267 79 0 chr13 44180895 44181097 -75563801 + L1ME LINE L1 5559 5776 -345 1182 257 137 40 chr13 44182656 44183227 -75561671 + Charlie7 DNA MER1_type 38 663 -1949 310 247 12 12 chr13 44183208 44183289 -75561609 - LTR33A LTR ERVL -4 519 439 * 343 262 0 49 chr13 44183558 44183680 -75561218 + Charlie7 DNA MER1_type 641 756 -1856 269 257 118 7 chr13 44183743 44183879 -75561019 + Charlie7 DNA MER1_type 2444 2594 -18 418 274 96 20 chr13 44184101 44184158 -75560740 - MER5B DNA MER1_type -5 173 122 2368 101 3 0 chr13 44184158 44184466 -75560432 + AluSq SINE Alu 1 309 -4 418 274 96 20 chr13 44184466 44184554 -75560344 - MER5B DNA MER1_type -56 122 17 1481 67 0 0 chr13 44184661 44184839 -75560059 - AluY SINE Alu -2 309 132 509 97 0 0 chr13 44184840 44184902 -75559996 - AluY SINE Alu -255 63 2 901 152 6 67 chr13 44185751 44185929 -75558969 + AluJo SINE Alu 1 167 -145 1643 118 0 0 chr13 44185930 44186150 -75558748 + AluSg/x SINE Alu 72 291 -19 2265 109 0 0 chr13 44186158 44186461 -75558437 + AluY SINE Alu 1 303 -8 1696 197 0 7 chr13 44187103 44187392 -75557506 + AluJo SINE Alu 1 287 -25 1724 156 32 0 chr13 44187450 44187732 -75557166 - AluJb SINE Alu -21 291 1 204 67 0 0 chr13 44187737 44187767 -75557131 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1561 154 71 11 chr13 44187773 44188039 -75556859 - AluJo SINE Alu -30 282 1 29 0 0 0 chr13 44188118 44188147 -75556751 + AT_rich Low_complexity Low_complexity 1 29 0 2549 51 0 3 chr13 44188245 44188541 -75556357 - AluY SINE Alu -16 295 1 596 146 0 3 chr13 44188577 44188694 -75556204 + LTR24 LTR ERV1 350 467 0 26 0 0 0 chr13 44189260 44189286 -75555612 + AT_rich Low_complexity Low_complexity 1 26 0 1898 124 54 10 chr13 44189286 44189584 -75555314 - AluSx SINE Alu -1 311 1 2460 81 0 0 chr13 44189992 44190287 -75554611 + AluSg SINE Alu 1 295 -15 2358 92 0 3 chr13 44191879 44192182 -75552716 + AluSq SINE Alu 1 302 -11 180 0 0 0 chr13 44192824 44192844 -75552054 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr13 44193688 44193709 -75551189 + AT_rich Low_complexity Low_complexity 1 21 0 302 314 50 0 chr13 44194649 44194744 -75550154 + MIR SINE MIR 7 106 -102 2245 110 7 0 chr13 44194844 44195143 -75549755 - AluSq SINE Alu -12 301 1 1886 159 212 17 chr13 44195329 44195687 -75549211 - MSTC LTR MaLR 0 428 1 2202 60 4 0 chr13 44196024 44196289 -75548609 + AluY SINE Alu 1 266 -45 1085 186 10 122 chr13 44196450 44196594 -75548304 - AluJo SINE Alu -50 262 166 2472 66 0 7 chr13 44196594 44196897 -75548001 - AluSg1 SINE Alu -8 301 1 1085 186 10 122 chr13 44196897 44197047 -75547851 - AluJo SINE Alu -146 166 1 1383 64 0 12 chr13 44197327 44197500 -75547398 - AluSg/x SINE Alu -13 297 127 1255 175 51 78 chr13 44197984 44197995 -75546903 - L1MB8 LINE L1 -34 6150 6140 2206 112 0 10 chr13 44197995 44198300 -75546598 - AluY SINE Alu -9 302 1 1255 175 51 78 chr13 44198300 44198330 -75546568 - L1MB8 LINE L1 -44 6140 6111 1434 166 121 11 chr13 44198330 44198595 -75546303 + AluJb SINE Alu 1 294 -18 1255 175 51 78 chr13 44198595 44198884 -75546014 - L1MB8 LINE L1 -73 6111 5828 461 214 56 0 chr13 44198884 44198973 -75545925 + MER2 DNA MER2_type 1 94 -251 207 0 0 0 chr13 44198973 44198996 -75545902 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5500 42 0 0 chr13 44198996 44199638 -75545260 - L1PA5 LINE L1 -22 6132 5491 1050 184 90 30 chr13 44199638 44199871 -75545027 + MER2 DNA MER2_type 99 345 0 1134 175 62 12 chr13 44199871 44200111 -75544787 - L1MB8 LINE L1 -355 5829 5578 2203 103 0 13 chr13 44200111 44200412 -75544486 - AluSq SINE Alu -16 297 1 2730 128 59 2 chr13 44200857 44201262 -75543636 - MSTA LTR MaLR 0 428 1 2321 110 3 0 chr13 44202483 44202793 -75542105 - AluSx SINE Alu 0 312 2 237 246 0 31 chr13 44202863 44202928 -75541970 + L2 LINE L2 3210 3272 0 2074 105 11 0 chr13 44203297 44203574 -75541324 + AluSp SINE Alu 1 280 -33 336 328 173 8 chr13 44203713 44204000 -75540898 - L2 LINE L2 -218 3054 2718 420 250 100 31 chr13 44205217 44205377 -75539521 - MER5A DNA MER1_type -12 177 7 2293 70 11 7 chr13 44205588 44205874 -75539024 + AluSq SINE Alu 1 287 -26 24 32 0 0 chr13 44205874 44205905 -75538993 + AT_rich Low_complexity Low_complexity 1 31 0 2354 105 0 0 chr13 44206171 44206476 -75538422 - AluSq SINE Alu -8 305 1 2110 104 0 17 chr13 44209068 44209380 -75535518 - AluSx SINE Alu 0 307 1 2217 92 7 3 chr13 44209619 44209913 -75534985 - AluY SINE Alu -16 295 1 2033 122 4 0 chr13 44210006 44210284 -75534614 + AluSg SINE Alu 1 279 -31 1426 97 0 5 chr13 44210355 44210541 -75534357 - AluSp SINE Alu -17 296 112 231 167 0 0 chr13 44210583 44210625 -75534273 + (TATATG)n Simple_repeat Simple_repeat 2 43 0 324 154 0 92 chr13 44210628 44210693 -75534205 - Charlie1 DNA MER1_type -2702 59 1 2042 103 21 4 chr13 44211541 44211822 -75533076 + AluSx SINE Alu 19 304 -8 228 304 139 0 chr13 44211971 44212086 -75532812 - MIR SINE MIR 0 262 132 2223 79 0 7 chr13 44212451 44212730 -75532168 + AluSc SINE Alu 1 277 -32 2040 113 21 0 chr13 44212971 44213253 -75531645 - AluSq SINE Alu 0 313 26 1744 169 3 29 chr13 44213298 44213605 -75531293 - AluJo SINE Alu -13 299 1 1840 109 11 8 chr13 44213613 44213899 -75530999 - AluSc SINE Alu 0 303 17 590 125 0 0 chr13 44213903 44213983 -75530915 + AluSg/x SINE Alu 217 296 -16 2392 81 0 0 chr13 44214020 44214316 -75530582 - AluY SINE Alu -15 296 1 2149 77 4 0 chr13 44215102 44215361 -75529537 + AluSp SINE Alu 31 290 -23 617 310 10 10 chr13 44215463 44215663 -75529235 - MIR SINE MIR 0 262 63 210 293 17 0 chr13 44216162 44216220 -75528678 - L2 LINE L2 -54 3218 3160 534 249 68 34 chr13 44216323 44216500 -75528398 + MIR SINE MIR 79 261 -1 201 360 32 32 chr13 44216509 44216634 -75528264 - L2 LINE L2 -179 3093 2969 1113 172 48 171 chr13 44217724 44218033 -75526865 + L1ME1 LINE L1 5217 5432 -1092 2052 120 0 7 chr13 44218033 44218332 -75526566 - AluSx SINE Alu -15 297 1 1113 172 48 171 chr13 44218332 44218578 -75526320 + L1ME1 LINE L1 5432 5707 -817 969 159 7 0 chr13 44218579 44218765 -75526133 - AluSq SINE Alu 0 320 134 2310 86 3 22 chr13 44218765 44218943 -75525955 - AluSg SINE Alu -2 308 137 2155 108 17 0 chr13 44218943 44219238 -75525660 - AluSp SINE Alu -13 300 1 2310 86 3 22 chr13 44219238 44219373 -75525525 - AluSg SINE Alu -173 137 1 500 188 0 10 chr13 44219374 44219475 -75525423 + L1ME1 LINE L1 5698 5797 -369 581 242 224 9 chr13 44219480 44219699 -75525199 + L1ME1 LINE L1 5876 6141 -25 2069 119 14 0 chr13 44219722 44220008 -75524890 + AluSx SINE Alu 3 292 -20 244 275 88 55 chr13 44220395 44220492 -75524406 + L1MC/D LINE L1 5725 5817 -1991 2341 78 7 0 chr13 44220492 44220785 -75524113 + AluSx SINE Alu 1 295 -17 244 275 88 55 chr13 44220785 44220869 -75524029 + L1MC/D LINE L1 5817 5912 -1896 2148 105 16 10 chr13 44221677 44221983 -75522915 + AluY SINE Alu 1 308 -3 1905 151 3 3 chr13 44223196 44223480 -75521418 + AluJo SINE Alu 3 286 -26 1215 186 46 8 chr13 44223486 44223723 -75521175 + AluSx SINE Alu 48 293 -19 1519 154 0 40 chr13 44224393 44224646 -75520252 - AluJb SINE Alu -64 248 6 201 227 80 0 chr13 44224969 44225021 -75519877 + L2 LINE L2 3213 3306 -7 2131 114 7 3 chr13 44225478 44225775 -75519123 + AluSq SINE Alu 1 298 -15 908 103 0 29 chr13 44225778 44225914 -75518984 + AluSg/x SINE Alu 178 309 -1 1557 154 116 16 chr13 44226274 44226592 -75518306 - MLT1A1 LTR MaLR 0 365 16 2340 100 0 3 chr13 44226592 44226892 -75518006 + AluSg SINE Alu 1 299 -11 192 77 0 0 chr13 44226960 44226986 -75517912 + (T)n Simple_repeat Simple_repeat 1 26 0 249 167 106 30 chr13 44227955 44228021 -75516877 - MLT1K LTR MaLR -2 586 516 264 30 0 0 chr13 44228180 44228213 -75516685 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2141 114 0 0 chr13 44228213 44228493 -75516405 - AluSx SINE Alu -32 280 1 333 316 86 34 chr13 44228885 44229002 -75515896 + L2 LINE L2 3146 3268 -4 1802 154 3 30 chr13 44229375 44229680 -75515218 - AluSx SINE Alu -15 297 1 311 247 34 51 chr13 44229682 44229851 -75515047 - L1MC/D LINE L1 -297 5824 5673 1809 139 0 77 chr13 44230194 44230504 -75514394 + AluSx SINE Alu 6 291 -21 843 161 0 8 chr13 44230509 44230639 -75514259 - FLAM_C SINE Alu 0 133 5 271 264 127 59 chr13 44230768 44230780 -75514118 - HAL1 LINE L1 -1446 1061 1051 1801 145 6 42 chr13 44230780 44230991 -75513907 - AluJo SINE Alu 0 312 114 1886 133 91 0 chr13 44230991 44231277 -75513621 - AluSx SINE Alu 0 312 1 1801 145 6 42 chr13 44231277 44231376 -75513522 - AluJo SINE Alu -198 114 13 271 264 127 59 chr13 44231376 44231670 -75513228 - HAL1 LINE L1 -1456 1051 734 467 356 68 5 chr13 44231906 44232128 -75512770 - MIR SINE MIR -1 261 26 248 116 4 0 chr13 44232131 44232174 -75512724 + Alu SINE Alu 161 196 -105 235 114 0 0 chr13 44232765 44232800 -75512098 + U2 snRNA snRNA 1 35 -153 1996 105 0 4 chr13 44232860 44233117 -75511781 + AluSq SINE Alu 1 256 -57 1676 245 92 6 chr13 44233117 44233607 -75511291 + MLT1F LTR MaLR 11 542 0 932 103 0 0 chr13 44234336 44234462 -75510436 - FLAM_C SINE Alu -7 126 1 2682 45 0 3 chr13 44234468 44234780 -75510118 - AluY SINE Alu 0 311 1 297 0 0 0 chr13 44235839 44235872 -75509026 + (T)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr13 44236010 44236033 -75508865 + (GGA)n Simple_repeat Simple_repeat 2 24 0 1043 105 6 52 chr13 44236761 44236933 -75507965 + AluSx SINE Alu 1 164 -148 322 42 21 0 chr13 44237099 44237147 -75507751 - AluY SINE Alu -259 49 1 1817 126 49 11 chr13 44237147 44237312 -75507586 - AluSx SINE Alu -15 297 140 2177 78 24 3 chr13 44237312 44237326 -75507572 - AluSc SINE Alu -10 299 287 486 0 0 0 chr13 44237326 44237380 -75507518 + (TTATG)n Simple_repeat Simple_repeat 2 55 0 2177 78 24 3 chr13 44237380 44237658 -75507240 - AluSc SINE Alu -22 287 1 315 0 0 0 chr13 44237658 44237693 -75507205 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1817 126 49 11 chr13 44237693 44237812 -75507086 - AluSx SINE Alu -171 141 1 1209 176 24 0 chr13 44237875 44238044 -75506854 - AluSg/x SINE Alu -8 302 126 207 0 0 0 chr13 44238044 44238067 -75506831 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1209 176 24 0 chr13 44238067 44238102 -75506796 - AluSg/x SINE Alu -184 126 93 246 158 0 0 chr13 44238108 44238146 -75506752 - Alu SINE Alu -264 38 1 235 276 209 56 chr13 44238415 44238486 -75506412 - L2 LINE L2 -239 3074 3015 2178 112 0 53 chr13 44238486 44238808 -75506090 + AluSg SINE Alu 1 305 -5 235 276 209 56 chr13 44238808 44238932 -75505966 - L2 LINE L2 -298 3015 2849 1955 127 39 0 chr13 44238963 44239084 -75505814 + AluSx SINE Alu 1 116 -196 2728 14 0 0 chr13 44239084 44239379 -75505519 + AluYa5 SINE Alu 16 310 -1 1955 127 39 0 chr13 44239379 44239541 -75505357 + AluSx SINE Alu 116 295 -17 246 62 0 0 chr13 44239541 44239573 -75505325 + (GGGGA)n Simple_repeat Simple_repeat 1 32 0 227 185 0 19 chr13 44239725 44239779 -75505119 + GA-rich Low_complexity Low_complexity 3 55 0 26 30 0 0 chr13 44240141 44240174 -75504724 + AT_rich Low_complexity Low_complexity 1 33 0 878 134 0 0 chr13 44240332 44240474 -75504424 + L1PA14 LINE L1 6019 6160 -1 972 205 78 83 chr13 44240537 44240567 -75504331 - L1MC5 LINE L1 -370 7591 7562 3960 108 11 0 chr13 44240567 44241115 -75503783 + MER41A LTR ERV1 1 554 0 972 205 78 83 chr13 44241115 44241479 -75503419 - L1MC5 LINE L1 -399 7562 7199 1816 167 27 10 chr13 44241495 44241795 -75503103 + AluJb SINE Alu 1 305 -7 2461 68 22 19 chr13 44242087 44242398 -75502500 + AluSx SINE Alu 1 312 0 2391 113 0 0 chr13 44242410 44242719 -75502179 + AluSq SINE Alu 1 309 -4 1902 113 46 14 chr13 44242787 44242919 -75501979 + AluSx SINE Alu 1 127 -185 2315 98 3 0 chr13 44242919 44243215 -75501683 + AluSx SINE Alu 1 297 -15 1902 113 46 14 chr13 44243215 44243366 -75501532 + AluSx SINE Alu 127 293 -19 612 85 19 19 chr13 44243383 44243489 -75501409 + (GGAA)n Simple_repeat Simple_repeat 1 106 0 192 133 0 0 chr13 44243621 44243651 -75501247 + MER5C DNA MER1_type 78 107 -217 588 134 62 0 chr13 44243682 44243779 -75501119 + AluSg/x SINE Alu 201 303 -6 765 190 26 65 chr13 44243801 44243997 -75500901 + MER5C DNA MER1_type 102 289 -35 2171 118 3 25 chr13 44243997 44244312 -75500586 + AluSx SINE Alu 1 308 -4 765 190 26 65 chr13 44244312 44244347 -75500551 + MER5C DNA MER1_type 289 324 0 420 125 0 0 chr13 44245002 44245058 -75499840 + AluS SINE Alu 2 57 -255 1154 133 61 0 chr13 44245062 44245227 -75499671 - AluSx SINE Alu -137 175 1 2303 204 22 66 chr13 44245338 44245917 -75498981 + MLT2B3 LTR ERVL 1 554 0 2498 57 0 13 chr13 44245938 44246237 -75498661 - AluY SINE Alu -16 295 1 1311 239 90 32 chr13 44246403 44246927 -75497971 + HAL1 LINE L1 1207 1760 -747 1729 170 125 50 chr13 44246931 44247348 -75497550 - MLT2B1 LTR ERVL -72 448 1 1272 261 82 57 chr13 44247348 44247581 -75497317 - L2 LINE L2 -27 3286 3060 2252 101 0 38 chr13 44247581 44247725 -75497173 + AluSx SINE Alu 1 149 -163 2393 82 10 0 chr13 44247725 44248018 -75496880 + AluSg SINE Alu 1 296 -14 2252 101 0 38 chr13 44248018 44248190 -75496708 + AluSx SINE Alu 149 305 -7 1272 261 82 57 chr13 44248190 44248213 -75496685 - L2 LINE L2 -253 3060 3039 1899 134 31 7 chr13 44248213 44248503 -75496395 - AluSx SINE Alu -15 297 1 1272 261 82 57 chr13 44248503 44249061 -75495837 - L2 LINE L2 -274 3039 2227 1752 211 114 30 chr13 44249122 44249614 -75495284 - MLT1H LTR MaLR -16 533 1 2572 59 3 0 chr13 44249632 44249935 -75494963 - AluY SINE Alu -7 304 1 1668 147 62 38 chr13 44250018 44250310 -75494588 + AluJb SINE Alu 11 309 -3 1782 181 3 3 chr13 44250314 44250617 -75494281 + AluJo SINE Alu 1 303 -9 270 280 38 68 chr13 44250942 44251074 -75493824 - L3b LINE CR1 -164 1419 1292 2065 145 0 3 chr13 44251467 44251764 -75493134 - AluSg SINE Alu -14 296 1 2677 62 0 0 chr13 44251773 44252079 -75492819 - AluY SINE Alu -5 306 1 330 268 106 16 chr13 44252261 44252384 -75492514 - MIR SINE MIR -81 181 48 183 80 0 0 chr13 44252524 44252549 -75492349 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 488 266 88 26 chr13 44252606 44252798 -75492100 + L3 LINE CR1 794 997 -580 2424 69 10 7 chr13 44252812 44253116 -75491782 + AluY SINE Alu 1 305 -6 2219 114 7 0 chr13 44253431 44253728 -75491170 + AluSx SINE Alu 1 299 -13 825 231 0 0 chr13 44253781 44253941 -75490957 + FRAM SINE Alu 6 165 -11 1049 213 59 75 chr13 44253943 44254219 -75490679 + MER39 LTR ERV1 343 613 -94 2250 97 13 0 chr13 44254219 44254517 -75490381 + AluSc SINE Alu 1 302 -7 1049 213 59 75 chr13 44254517 44254611 -75490287 + MER39 LTR ERV1 613 707 0 910 158 0 0 chr13 44255367 44255500 -75489398 - AluJb SINE Alu -179 133 1 732 151 0 103 chr13 44255520 44255666 -75489232 + FLAM_C SINE Alu 3 133 0 771 217 0 26 chr13 44256412 44256564 -75488334 - FRAM SINE Alu -21 155 8 417 247 65 71 chr13 44257198 44257352 -75487546 + L2 LINE L2 1917 2069 -1245 1364 161 107 29 chr13 44257352 44257632 -75487266 - AluJo SINE Alu -10 302 1 305 145 246 0 chr13 44257635 44257704 -75487194 - FLAM_A SINE Alu -13 120 35 531 244 349 11 chr13 44257721 44258421 -75486477 + L2 LINE L2 2069 3054 -259 672 208 8 0 chr13 44259054 44259179 -75485719 + FLAM_C SINE Alu 1 126 -17 1086 183 79 8 chr13 44259475 44259715 -75485183 + AluJo SINE Alu 31 287 -25 289 218 129 10 chr13 44260007 44260108 -75484790 - MER58 DNA MER1_type -82 259 147 1957 143 11 0 chr13 44261553 44261839 -75483059 - AluSx SINE Alu -23 289 1 1074 182 30 2 chr13 44265567 44265629 -75479269 + AluJo SINE Alu 7 66 -246 189 0 0 0 chr13 44265629 44265650 -75479248 + (CA)n Simple_repeat Simple_repeat 2 22 0 1074 182 30 2 chr13 44265650 44265823 -75479075 + AluJo SINE Alu 66 297 -15 1109 68 0 0 chr13 44266221 44266354 -75478544 + AluSp SINE Alu 149 281 -32 2239 85 0 7 chr13 44266681 44266963 -75477935 - AluSx SINE Alu -31 281 2 2426 89 0 0 chr13 44267166 44267470 -75477428 + AluSx SINE Alu 1 304 -8 250 179 86 60 chr13 44267540 44267657 -75477241 - MER112 DNA MER1_type -43 217 98 1170 127 0 0 chr13 44267657 44267882 -75477016 - AluSg/x SINE Alu 0 345 121 2025 157 0 0 chr13 44268261 44268561 -75476337 + AluSx SINE Alu 1 300 -12 2108 95 0 0 chr13 44268630 44268892 -75476006 + AluSq SINE Alu 1 262 -51 535 134 24 0 chr13 44268892 44268974 -75475924 + FLAM SINE Alu 45 128 -15 2504 60 0 7 chr13 44269040 44269340 -75475558 + AluY SINE Alu 1 298 -13 450 246 73 92 chr13 44269348 44269434 -75475464 + L2 LINE L2 3015 3101 -212 1785 148 79 0 chr13 44269434 44269712 -75475186 - AluSx SINE Alu -10 302 3 2536 64 0 10 chr13 44269712 44270025 -75474873 - AluY SINE Alu -1 310 1 450 246 73 92 chr13 44270025 44270073 -75474825 + L2 LINE L2 3100 3147 -166 2359 103 10 0 chr13 44270073 44270383 -75474515 - AluSp SINE Alu 0 313 1 450 246 73 92 chr13 44270383 44270506 -75474392 + L2 LINE L2 3147 3269 -44 2055 137 0 40 chr13 44270508 44270830 -75474068 + AluSx SINE Alu 1 309 -3 841 146 0 23 chr13 44271291 44271421 -75473477 + FLAM_C SINE Alu 1 127 -16 2251 93 23 3 chr13 44272012 44272314 -75472584 - AluSg SINE Alu -2 308 1 2394 96 3 6 chr13 44272324 44272636 -75472262 - AluY SINE Alu 0 311 1 558 0 0 0 chr13 44272757 44272819 -75472079 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 2529 85 0 0 chr13 44273412 44273717 -75471181 + AluSp SINE Alu 1 305 -8 2159 117 0 0 chr13 44274011 44274294 -75470604 + AluSx SINE Alu 21 303 -9 800 171 0 0 chr13 44274583 44274706 -75470192 - FLAM_A SINE Alu -10 123 1 1775 175 0 23 chr13 44275288 44275597 -75469301 - AluJb SINE Alu -8 304 3 2576 57 0 0 chr13 44275882 44276180 -75468718 - AluY SINE Alu -13 298 1 2235 107 0 13 chr13 44276180 44276345 -75468553 - AluSp SINE Alu -17 296 135 2421 76 3 13 chr13 44276345 44276659 -75468239 - AluY SINE Alu 0 311 1 2235 107 0 13 chr13 44276659 44276793 -75468105 - AluSp SINE Alu -178 135 1 843 127 0 24 chr13 44276794 44276920 -75467978 - FLAM_C SINE Alu -11 132 10 1821 160 0 36 chr13 44276927 44277234 -75467664 + AluJb SINE Alu 1 296 -16 1961 149 0 7 chr13 44277597 44277899 -75466999 - AluJb SINE Alu -1 311 12 2306 129 0 0 chr13 44277936 44278247 -75466651 - AluSx SINE Alu -1 311 1 2324 104 0 0 chr13 44278395 44278693 -75466205 - AluSx SINE Alu -14 298 1 280 255 189 46 chr13 44479406 44479602 -75265296 - L3 LINE CR1 -164 1413 1190 * 582 251 278 3 chr13 44479560 44479855 -75265043 + L2 LINE L2 2255 2630 -684 2647 165 34 16 chr13 44479861 44480359 -75264539 - MLT2B2 LTR ERVL -8 507 1 495 258 90 86 chr13 44480486 44480951 -75263947 + L2 LINE L2 2844 3310 -3 192 292 77 0 chr13 44481318 44481383 -75263515 - L3 LINE CR1 -901 676 607 207 0 0 0 chr13 44481687 44481710 -75263188 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 240 333 0 44 chr13 44482165 44482255 -75262643 - L3 LINE CR1 -1312 265 180 455 336 22 0 chr13 44482367 44482501 -75262397 - MIR SINE MIR -79 183 47 182 115 0 0 chr13 44482718 44482744 -75262154 - MIR SINE MIR -12 250 225 399 41 0 0 chr13 44483410 44483459 -75261439 + (TA)n Simple_repeat Simple_repeat 2 50 0 2273 118 0 0 chr13 44483459 44483764 -75261134 - AluSx SINE Alu -7 305 1 582 224 106 103 chr13 44483878 44484208 -75260690 - MER46C DNA MER2_type -7 331 1 1069 182 50 1 chr13 44484777 44485121 -75259777 + MER119 DNA MER1_type 10 401 -182 269 286 89 18 chr13 44485097 44485209 -75259689 + MER34B LTR ERV1 5 124 -441 * 398 272 35 49 chr13 44485296 44485583 -75259315 + MER34B LTR ERV1 283 565 0 934 161 49 45 chr13 44485583 44485807 -75259091 + MER119 DNA MER1_type 359 583 0 303 209 38 57 chr13 44485822 44485927 -75258971 + L2 LINE L2 2435 2537 -777 2458 87 10 0 chr13 44486438 44486747 -75258151 - AluSx SINE Alu 0 312 1 3304 143 28 2 chr13 44488254 44488794 -75256104 + MER41C LTR ERV1 1 554 0 734 270 77 8 chr13 44489244 44489503 -75255395 - L1MC/D LINE L1 -2148 5660 5384 23 33 0 0 chr13 44491223 44491253 -75253645 + AT_rich Low_complexity Low_complexity 1 30 0 792 142 0 0 chr13 44491503 44491630 -75253268 - L1PB1 LINE L1 -8 6143 6017 204 293 67 0 chr13 44491791 44491866 -75253032 - L2 LINE L2 -1454 1860 1781 1474 137 32 0 chr13 44491867 44492111 -75252787 - AluSq SINE Alu 0 307 57 970 140 156 31 chr13 44492250 44492507 -75252391 - L1MB8 LINE L1 -118 6060 5772 270 293 155 6 chr13 44492642 44492823 -75252075 - L1MC4a LINE L1 -1614 6194 5987 2374 51 41 0 chr13 44492827 44493122 -75251776 - AluY SINE Alu -4 307 1 634 250 213 0 chr13 44493134 44493430 -75251468 - L2 LINE L2 -1597 1717 1359 353 270 10 50 chr13 44493436 44493536 -75251362 - L2 LINE L2 -2075 1239 1144 1372 225 98 38 chr13 44493583 44494156 -75250742 - L1MC4 LINE L1 -2 8040 7434 2055 126 3 14 chr13 44494612 44494905 -75249993 + AluSx SINE Alu 1 290 -22 435 277 7 51 chr13 44495497 44495634 -75249264 + MIR SINE MIR 80 210 -52 314 281 67 85 chr13 44496808 44496972 -75247926 + HAL1b LINE L1 751 911 -437 581 167 45 15 chr13 44497850 44497982 -75246916 - L1MD1 LINE L1 -23 6219 6084 430 193 72 0 chr13 44498135 44498218 -75246680 + Tigger5 DNA MER2_type 1 89 -2234 464 149 0 0 chr13 44498268 44498342 -75246556 + Tigger5 DNA MER2_type 2250 2323 0 1519 225 63 48 chr13 44498347 44498423 -75246475 - L1MEc LINE L1 -4354 2768 2695 1796 148 3 53 chr13 44498423 44498727 -75246171 + AluJo SINE Alu 1 289 -23 1519 225 63 48 chr13 44498727 44499024 -75245874 - L1MEc LINE L1 -4427 2695 2380 2438 87 0 0 chr13 44499024 44499333 -75245565 - AluSq SINE Alu -3 310 2 1519 225 63 48 chr13 44499333 44499563 -75245335 - L1MEc LINE L1 -4742 2380 2155 830 267 41 9 chr13 44499791 44500106 -75244792 - L1MEc LINE L1 -5257 1684 1360 2425 77 0 0 chr13 44500107 44500405 -75244493 - AluY SINE Alu -13 298 1 504 263 61 9 chr13 44500419 44500632 -75244266 - L1MEc LINE L1 -6168 255 32 245 175 105 0 chr13 44500880 44500937 -75243961 - MIR SINE MIR -3 259 197 2505 56 0 28 chr13 44501376 44501696 -75243202 - AluY SINE Alu 0 311 1 371 319 42 21 chr13 44501698 44501842 -75243056 - MIR SINE MIR -70 192 46 1646 160 23 23 chr13 44502438 44502738 -75242160 - AluJb SINE Alu -12 300 1 1729 181 7 7 chr13 44502960 44503258 -75241640 + AluJb SINE Alu 1 298 -14 692 303 39 17 chr13 44504248 44504482 -75240416 + MIR SINE MIR 16 254 -8 536 229 35 47 chr13 44504668 44504838 -75240060 - L1ME1 LINE L1 -15 6151 5984 2260 104 3 0 chr13 44504905 44505204 -75239694 - AluY SINE Alu -11 300 1 2292 60 43 0 chr13 44505475 44505757 -75239141 - AluY SINE Alu -17 294 1 2325 71 0 52 chr13 44505757 44506065 -75238833 - AluSx SINE Alu -18 294 3 707 279 53 5 chr13 44506807 44507015 -75237883 - MIR SINE MIR -13 249 32 23 0 0 0 chr13 44507598 44507621 -75237277 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 44507849 44507875 -75237023 + AT_rich Low_complexity Low_complexity 1 26 0 272 253 121 40 chr13 44508773 44508872 -75236026 - L2 LINE L2 -14 3299 3193 266 193 0 0 chr13 44509420 44509477 -75235421 + L1ME4a LINE L1 5968 6024 -97 392 337 40 20 chr13 44509587 44509786 -75235112 - L2 LINE L2 -8 3305 3103 258 337 11 11 chr13 44510124 44510216 -75234682 - MIR SINE MIR -83 125 34 372 22 0 0 chr13 44510342 44510387 -75234511 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 9206 35 8 177 chr13 44510387 44512004 -75232894 - SVA Other Other -23 1363 20 284 0 0 27 chr13 44512005 44512042 -75232856 + (GGGAGA)n Simple_repeat Simple_repeat 1 36 0 193 350 86 29 chr13 44512428 44512568 -75232330 - L2 LINE L2 -188 3084 2937 4713 123 47 10 chr13 44512728 44513927 -75230971 + L1MA4A LINE L1 4785 6028 -275 21 0 0 0 chr13 44514028 44514049 -75230849 + AT_rich Low_complexity Low_complexity 1 21 0 809 117 39 7 chr13 44514212 44514366 -75230532 + L1MA4 LINE L1 6137 6295 -5 184 326 0 54 chr13 44514372 44514464 -75230434 - L2 LINE L2 -627 2687 2601 1998 163 3 0 chr13 44514753 44515060 -75229838 + AluJb SINE Alu 1 308 -4 260 264 105 34 chr13 44515446 44515742 -75229156 + L1ME4a LINE L1 4381 4697 -1449 317 287 96 22 chr13 44515999 44516135 -75228763 + L1ME4a LINE L1 5481 5626 -495 257 317 124 0 chr13 44516151 44516296 -75228602 - MIR SINE MIR -92 170 8 234 259 19 0 chr13 44516383 44516437 -75228461 - MIR SINE MIR -13 249 195 299 224 143 27 chr13 44516448 44516707 -75228191 + L1ME4a LINE L1 5828 6116 -5 2357 99 0 0 chr13 44519921 44520223 -75224675 + AluSq SINE Alu 1 302 -11 1706 169 7 13 chr13 44520396 44520704 -75224194 - AluJb SINE Alu -6 306 1 2293 78 48 0 chr13 44520728 44521022 -75223876 - AluSc SINE Alu -1 308 1 843 147 0 22 chr13 44521030 44521166 -75223732 - FLAM_C SINE Alu 0 133 1 1909 153 10 16 chr13 44521251 44521558 -75223340 - AluJb SINE Alu -7 305 1 225 309 71 0 chr13 44521623 44521707 -75223191 + MIR SINE MIR 81 170 -92 25 31 0 0 chr13 44521785 44521817 -75223081 + AT_rich Low_complexity Low_complexity 1 32 0 38 0 0 0 chr13 44522242 44522280 -75222618 + AT_rich Low_complexity Low_complexity 1 38 0 874 86 8 0 chr13 44522280 44522397 -75222501 - AluJb SINE Alu -194 118 1 2468 69 0 0 chr13 44522546 44522851 -75222047 - AluY SINE Alu -6 305 1 352 205 178 49 chr13 44523219 44523380 -75221518 - L1MC5 LINE L1 -48 7913 7723 1903 145 0 7 chr13 44523380 44523699 -75221199 + AluJb SINE Alu 1 317 0 352 205 178 49 chr13 44523699 44523721 -75221177 - L1MC5 LINE L1 -238 7723 7705 449 153 15 73 chr13 44523860 44523997 -75220901 - L1MC5 LINE L1 -230 7731 7603 * 736 234 70 8 chr13 44523981 44524225 -75220673 - L1MC4 LINE L1 -76 7966 7708 814 100 0 0 chr13 44524235 44524345 -75220553 - AluSp/q SINE Alu -10 303 194 1146 221 28 22 chr13 44524373 44524517 -75220381 - L1M4 LINE L1 -1172 4974 4832 216 0 0 0 chr13 44524517 44524541 -75220357 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1146 221 28 22 chr13 44524541 44524718 -75220180 - L1M4 LINE L1 -1314 4832 4651 1085 234 102 41 chr13 44524813 44525275 -75219623 - L1MC4a LINE L1 -1011 6797 6308 250 264 216 14 chr13 44525375 44525523 -75219375 + MIR SINE MIR 36 213 -49 1817 153 14 0 chr13 44525618 44525905 -75218993 + AluJb SINE Alu 1 291 -21 477 34 0 0 chr13 44525915 44525974 -75218924 + (TG)n Simple_repeat Simple_repeat 2 60 0 198 0 0 0 chr13 44525973 44525995 -75218903 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 4847 163 30 68 chr13 44526416 44527612 -75217286 - L1MC3 LINE L1 -1 7784 6634 21 71 0 0 chr13 44527820 44527862 -75217036 + AT_rich Low_complexity Low_complexity 1 42 0 1242 126 5 5 chr13 44528506 44528705 -75216193 - L1PB2 LINE L1 0 6151 5953 354 373 6 0 chr13 44530406 44530575 -75214323 - L2 LINE L2 -663 2651 2482 566 127 83 142 chr13 44530617 44530780 -75214118 + MER33 DNA MER1_type 1 142 -90 2221 91 0 0 chr13 44530780 44531055 -75213843 + AluSx SINE Alu 1 275 -37 342 78 20 0 chr13 44531186 44531237 -75213661 + Alu SINE Alu 247 298 -2 * 561 100 91 0 chr13 44531226 44531336 -75213562 + MER33 DNA MER1_type 163 282 -81 2319 94 0 10 chr13 44531337 44531636 -75213262 - AluSx SINE Alu -16 296 1 1390 158 115 29 chr13 44531648 44531926 -75212972 - AluJo SINE Alu 0 302 1 916 206 0 6 chr13 44531928 44532108 -75212790 - AluSg/x SINE Alu -13 299 121 2326 118 0 0 chr13 44533512 44533817 -75211081 + AluSx SINE Alu 1 305 -7 2210 126 0 3 chr13 44533819 44534128 -75210770 + AluSg SINE Alu 3 310 0 24 0 0 0 chr13 44534393 44534417 -75210481 + AT_rich Low_complexity Low_complexity 1 24 0 291 250 48 0 chr13 44534417 44534501 -75210397 - L1MC4 LINE L1 -1339 6703 6616 263 248 132 8 chr13 44534508 44534629 -75210269 - L1MC4 LINE L1 -124 7918 7783 2363 96 0 0 chr13 44535072 44535365 -75209533 - AluSg SINE Alu -15 295 3 1866 167 0 3 chr13 44537925 44538225 -75206673 - AluJo SINE Alu -13 299 1 1714 174 46 0 chr13 44538225 44538506 -75206392 - AluJb SINE Alu -17 295 2 654 88 65 6 chr13 44538776 44538946 -75205952 + (TA)n Simple_repeat Simple_repeat 1 180 0 212 95 0 48 chr13 44538946 44538988 -75205910 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 669 78 72 0 chr13 44538988 44539154 -75205744 + (TA)n Simple_repeat Simple_repeat 1 178 0 2286 116 0 0 chr13 44539750 44540053 -75204845 - AluSx SINE Alu -9 303 1 2391 67 3 7 chr13 44540240 44540540 -75204358 - AluY SINE Alu -12 299 1 226 313 28 31 chr13 44542251 44542384 -75202514 + MIR SINE MIR 23 152 -63 480 199 252 0 chr13 44542735 44542866 -75202032 + MER105 DNA DNA 25 188 -16 26 30 0 0 chr13 44543079 44543112 -75201786 + AT_rich Low_complexity Low_complexity 1 33 0 1083 184 5 42 chr13 44545185 44545402 -75199496 - MER6B DNA MER2_type 0 210 2 1644 174 9 31 chr13 44545589 44545906 -75198992 + AluJb SINE Alu 1 310 -2 582 171 9 9 chr13 44546644 44546749 -75198149 + FLAM_A SINE Alu 15 119 -23 231 36 0 0 chr13 44547169 44547197 -75197701 + (CA)n Simple_repeat Simple_repeat 1 28 0 2084 126 7 7 chr13 44547394 44547696 -75197202 - AluSx SINE Alu -10 302 1 548 82 0 24 chr13 44551096 44551181 -75193717 - L1PA16 LINE L1 -2 6164 6082 1197 130 10 24 chr13 44553242 44553450 -75191448 - L1MD2 LINE L1 -1 6358 6154 631 214 120 94 chr13 44553872 44554288 -75190610 - L1MC4 LINE L1 -133 7909 7483 247 206 137 0 chr13 44554292 44554365 -75190533 + L1M4 LINE L1 2664 2746 -3400 764 185 20 70 chr13 44554417 44554617 -75190281 + MER20 DNA MER1_type 30 219 0 355 221 157 36 chr13 44554685 44554825 -75190073 + L2 LINE L2 3141 3297 -16 323 178 0 14 chr13 44555403 44555476 -75189422 + C-rich Low_complexity Low_complexity 4 75 0 1688 170 18 4 chr13 44555477 44555753 -75189145 - AluJb SINE Alu -32 280 1 1862 152 10 10 chr13 44555758 44556061 -75188837 - AluSx SINE Alu -9 303 1 212 250 0 0 chr13 44557287 44557335 -75187563 + MIR SINE MIR 82 129 -133 693 258 52 14 chr13 44557594 44557807 -75187091 - MIR SINE MIR -19 243 23 497 257 9 0 chr13 44559469 44559582 -75185316 - MER81 DNA DNA 0 114 1 1551 194 76 45 chr13 44559963 44560411 -75184487 + MLT1C LTR MaLR 6 467 0 1056 161 0 87 chr13 44560630 44560711 -75184187 - AluJo SINE Alu -101 211 125 1906 146 0 10 chr13 44560711 44561026 -75183872 - AluSx SINE Alu 0 312 1 1056 161 0 87 chr13 44561026 44561161 -75183737 - AluJo SINE Alu -187 125 13 325 238 125 12 chr13 44561852 44562012 -75182886 + L2 LINE L2 2888 3065 -248 320 157 121 60 chr13 44562082 44562165 -75182733 + MER82 DNA MER2_type 7 94 -559 281 328 17 9 chr13 44562413 44562529 -75182369 - MIR SINE MIR -115 147 31 443 229 10 10 chr13 44562593 44562689 -75182209 + MER82 DNA MER2_type 448 543 -110 555 186 0 10 chr13 44562724 44562821 -75182077 - MER82 DNA MER2_type -557 96 1 221 324 29 19 chr13 44562821 44562926 -75181972 + L2 LINE L2 3169 3274 -39 1260 239 36 18 chr13 44563260 44563590 -75181308 + LTR47B LTR ERVL 108 443 0 817 181 19 0 chr13 44563846 44564006 -75180892 + MIR SINE MIR 28 190 -72 296 253 11 0 chr13 44564340 44564427 -75180471 + LTR43 LTR ERV1 204 291 -311 2196 115 3 0 chr13 44565810 44566105 -75178793 + AluSx SINE Alu 1 296 -16 216 222 0 0 chr13 44567263 44567308 -75177590 + MIR3 SINE MIR 116 160 -48 2160 182 63 11 chr13 44567364 44567808 -75177090 - MLT1C LTR MaLR 0 467 1 279 219 96 0 chr13 44567986 44568059 -75176839 - MLT1C LTR MaLR -387 80 1 618 249 83 118 chr13 44568061 44568538 -75176360 - L1M4 LINE L1 -2682 3464 2972 746 182 0 8 chr13 44568538 44568659 -75176239 - 5S rRNA rRNA 0 121 2 618 249 83 118 chr13 44568659 44568682 -75176216 - L1M4 LINE L1 -3174 2972 2950 1499 203 124 14 chr13 44568682 44569037 -75175861 + MSTD LTR MaLR 1 394 -2 618 249 83 118 chr13 44569037 44569352 -75175546 - L1M4 LINE L1 -3196 2950 2676 567 268 21 16 chr13 44569412 44569602 -75175296 - L1MEd LINE L1 -5910 209 19 216 273 91 0 chr13 44570357 44570412 -75174486 - L3 LINE CR1 -75 1502 1443 181 327 133 9 chr13 44570710 44570823 -75174075 - MIR SINE MIR -4 258 132 3055 129 38 40 chr13 44571005 44571562 -75173336 - L1MA8 LINE L1 0 6291 5736 289 209 67 48 chr13 44572672 44572777 -75172121 + MLT1J1 LTR MaLR 29 135 -311 406 302 26 37 chr13 44572827 44573016 -75171882 + MLT1J2 LTR MaLR 264 450 0 850 315 42 24 chr13 44573113 44573494 -75171404 + L2 LINE L2 2925 3312 -1 14246 174 23 14 chr13 44573579 44577404 -75167494 - L1PB1 LINE L1 -2 6149 2295 3218 127 64 7 chr13 44577490 44578034 -75166864 - L1MC1 LINE L1 0 6333 5759 1059 167 0 17 chr13 44578091 44578265 -75166633 - FAM SINE Alu -4 171 1 231 301 41 0 chr13 44578918 44578991 -75165907 - L2 LINE L2 -3 3310 3235 1509 174 97 0 chr13 44579255 44579513 -75165385 - AluSx SINE Alu -29 283 1 314 161 113 0 chr13 44581898 44581960 -75162938 + L2 LINE L2 3238 3306 -7 1973 134 102 15 chr13 44582394 44582729 -75162169 + THE1B LTR MaLR 1 364 0 11970 89 11 3 chr13 44582729 44584297 -75160601 + THE1B-int LTR MaLR 1 1580 0 2113 126 85 18 chr13 44584297 44584638 -75160260 + THE1B LTR MaLR 1 364 0 1163 80 74 0 chr13 44585510 44585673 -75159225 + L1PA11 LINE L1 6000 6174 0 2039 126 0 0 chr13 44586058 44586351 -75158547 - AluSx SINE Alu -19 293 1 929 124 0 0 chr13 44587241 44587370 -75157528 + FLAM_C SINE Alu 1 129 -4 1377 179 13 152 chr13 44588512 44588965 -75155933 + MLT1B LTR MaLR 1 390 0 244 306 90 0 chr13 44589205 44589316 -75155582 + L2 LINE L2 2603 2723 -591 899 278 78 61 chr13 44589636 44590175 -75154723 + L1MC/D LINE L1 5255 5802 -2006 189 314 20 0 chr13 44590474 44590525 -75154373 + L2 LINE L2 2700 2751 -563 948 183 61 5 chr13 44591449 44591646 -75153252 - L1MDa LINE L1 -6137 403 196 223 307 43 97 chr13 44592086 44592343 -75152555 - L2 LINE L2 -254 3059 2817 186 295 54 8 chr13 44592319 44592448 -75152450 - L2 LINE L2 -422 2892 2758 * 224 287 65 73 chr13 44594221 44594399 -75150499 + MIR SINE MIR 35 218 -44 2068 93 0 0 chr13 44594451 44594731 -75150167 - AluSc SINE Alu -4 305 26 1556 155 72 21 chr13 44594777 44595067 -75149831 - AluJo SINE Alu -7 305 1 2960 142 10 12 chr13 44595167 44595653 -75149245 + MER31A LTR ERV1 1 485 0 299 235 241 35 chr13 44595892 44595945 -75148953 + MER5A DNA MER1_type 5 46 -143 1378 186 54 0 chr13 44595945 44596225 -75148673 + AluJb SINE Alu 1 295 -17 299 235 241 35 chr13 44596225 44596317 -75148581 + MER5A DNA MER1_type 46 185 -4 189 288 220 17 chr13 44597360 44597478 -75147420 + L2 LINE L2 3167 3308 -5 2074 119 0 0 chr13 44598558 44598851 -75146047 - AluSx SINE Alu -19 293 1 1776 312 114 34 chr13 44599049 44600116 -75144782 - L3 LINE CR1 -124 1453 301 2254 113 39 36 chr13 44600723 44601086 -75143812 + THE1B LTR MaLR 1 364 0 230 167 24 0 chr13 44601277 44601319 -75143579 - L2 LINE L2 -8 3305 3263 192 167 0 28 chr13 44601737 44601773 -75143125 + MER5A DNA MER1_type 40 74 -115 214 281 34 67 chr13 44605153 44605242 -75139656 + MIR SINE MIR 20 105 -157 860 254 22 17 chr13 44606646 44606878 -75138020 - MIR SINE MIR -12 250 18 214 229 0 21 chr13 44607363 44607411 -75137487 - L2 LINE L2 -6 3307 3261 233 243 27 81 chr13 44608661 44608680 -75136218 + L1ME LINE L1 5809 5827 -294 2171 107 0 0 chr13 44608680 44608988 -75135910 + AluY SINE Alu 1 308 -3 233 243 27 81 chr13 44608988 44609079 -75135819 + L1ME LINE L1 5827 5913 -208 278 315 56 42 chr13 44609372 44609515 -75135383 + MIR3 SINE MIR 19 163 -45 369 250 138 17 chr13 44610223 44610339 -75134559 - MIR SINE MIR -46 216 87 874 217 25 43 chr13 44610794 44611029 -75133869 - MIR SINE MIR -1 261 31 497 205 77 64 chr13 44611105 44611261 -75133637 - MER117 DNA MER1_type -34 163 6 240 218 0 103 chr13 44611368 44611455 -75133443 - L2 LINE L2 -5 3267 3190 370 177 73 179 chr13 44612520 44613028 -75131870 + L1ME4a LINE L1 5618 6071 -50 1238 174 5 9 chr13 44613091 44613310 -75131588 - AluJo SINE Alu -94 218 1 328 264 0 78 chr13 44613992 44614185 -75130713 + CT-rich Low_complexity Low_complexity 1 178 0 225 355 0 0 chr13 44614881 44614957 -75129941 - LTR16B LTR ERVL -388 76 1 451 299 60 57 chr13 44615189 44615710 -75129188 + L2 LINE L2 2514 3313 0 657 340 62 35 chr13 44616070 44616502 -75128396 + LTR16A LTR ERVL 7 450 0 1513 164 171 32 chr13 44616742 44617176 -75127722 - LTR54B LTR ERV1 -4 494 1 690 109 0 0 chr13 44617628 44617720 -75127178 + MER31A LTR ERV1 1 92 -393 281 152 0 15 chr13 44617728 44617794 -75127104 - L1PB4 LINE L1 0 6156 6092 12964 110 11 58 chr13 44617935 44620794 -75124104 - L1P3 LINE L1 -3611 2850 9 678 169 0 8 chr13 44620810 44620934 -75123964 + MER69 DNA AcHobo 2394 2516 -10 305 274 32 42 chr13 44621726 44621821 -75123077 - L2 LINE L2 -20 3293 3200 1472 255 138 39 chr13 44622655 44623628 -75121270 + L2 LINE L2 2268 3311 -2 984 210 0 0 chr13 44623840 44624007 -75120891 - FAM SINE Alu -8 167 1 30 0 0 0 chr13 44624174 44624204 -75120694 + AT_rich Low_complexity Low_complexity 1 30 0 271 394 80 17 chr13 44625193 44625495 -75119403 - L3 LINE CR1 -1110 467 147 192 328 15 0 chr13 44628651 44628718 -75116180 - MIR SINE MIR 0 262 195 636 266 178 49 chr13 44629125 44629512 -75115386 + L2 LINE L2 2863 3299 -14 1905 138 58 21 chr13 44629645 44629716 -75115182 - MER7A DNA MER2_type -2693 345 278 4735 117 14 29 chr13 44629716 44630453 -75114445 + LTR8A LTR ERV1 2 727 0 1905 138 58 21 chr13 44630453 44630707 -75114191 - MER7A DNA MER2_type -2760 278 10 225 0 0 0 chr13 44630712 44630737 -75114161 + (TG)n Simple_repeat Simple_repeat 2 26 0 26 30 0 0 chr13 44630737 44630770 -75114128 + AT_rich Low_complexity Low_complexity 1 33 0 236 273 129 38 chr13 44631764 44631896 -75113002 - L3 LINE CR1 -215 1362 1219 482 279 81 15 chr13 44631896 44632093 -75112805 - L3 LINE CR1 -706 871 662 362 267 0 22 chr13 44632119 44632209 -75112689 - L2 LINE L2 -2 3270 3183 257 285 73 56 chr13 44632290 44632469 -75112429 - L2 LINE L2 -2765 549 368 192 310 92 23 chr13 44634241 44634328 -75110570 + L2 LINE L2 3180 3272 0 305 162 15 0 chr13 44635468 44635536 -75109362 + GA-rich Low_complexity Low_complexity 2 70 0 18411 95 11 3 chr13 44636262 44639569 -75105329 - L1PA7 LINE L1 -2 6152 2823 359 265 109 14 chr13 44639715 44639862 -75105036 - MIR SINE MIR -13 249 89 1719 209 90 37 chr13 44640444 44640956 -75103942 + HsTC2 DNA Tc2 1185 1899 0 412 266 96 15 chr13 44641136 44641335 -75103563 - MLT1J1 LTR MaLR -1 445 231 234 0 0 0 chr13 44641340 44641366 -75103532 + (GA)n Simple_repeat Simple_repeat 1 26 0 2511 84 0 0 chr13 44641482 44641793 -75103105 + AluSq SINE Alu 1 311 -2 1747 167 17 17 chr13 44642266 44642566 -75102332 - AluJo SINE Alu -10 302 3 498 275 8 0 chr13 44642648 44642779 -75102119 + MLT1J2 LTR MaLR 37 168 -282 579 295 124 5 chr13 44642791 44643001 -75101897 + MLT1J1 LTR MaLR 207 441 -5 858 196 49 0 chr13 44643027 44643196 -75101702 + FRAM SINE Alu 1 40 0 31855 110 11 57 chr13 44643909 44650365 -75094533 - L1PA7 LINE L1 -1 6153 10 451 138 32 64 chr13 44650747 44650841 -75094057 + MER41A-int LTR ERV1 4 94 -7662 * 1338 133 0 10 chr13 44650832 44651035 -75093863 + MER41A-int LTR ERV1 2675 2875 -2140 * 9862 68 21 12 chr13 44651021 44652325 -75092573 + MER41A-int LTR ERV1 4630 5944 -2 3729 73 0 0 chr13 44652325 44652791 -75092107 + MER41A LTR ERV1 1 466 -88 223 184 20 0 chr13 44653108 44653157 -75091741 + GA-rich Low_complexity Low_complexity 1 50 0 430 311 114 17 chr13 44653239 44653590 -75091308 + L1MC/D LINE L1 3439 3823 -2323 875 158 8 0 chr13 44653622 44653755 -75091143 + AluJo SINE Alu 3 136 -176 43740 32 21 2 chr13 44653762 44659799 -75085099 + L1PA2 LINE L1 1 6155 0 367 296 136 24 chr13 44660086 44660382 -75084516 + MLT1L LTR MaLR 235 505 -6 192 77 0 0 chr13 44660586 44660612 -75084286 + (CA)n Simple_repeat Simple_repeat 2 27 0 321 335 87 5 chr13 44661091 44661458 -75083440 + L1MC/D LINE L1 4186 4602 -1544 1900 212 29 73 chr13 44661488 44662018 -75082880 - MLT2B3 LTR ERVL -48 500 3 26 50 0 0 chr13 44662494 44662534 -75082364 + AT_rich Low_complexity Low_complexity 1 40 0 2569 189 12 7 chr13 44662567 44662991 -75081907 - MSTB LTR MaLR 0 426 1 10496 149 9 33 chr13 44662991 44664682 -75080216 - MSTB-int LTR MaLR 0 1651 1 2740 171 0 14 chr13 44664682 44665114 -75079784 - MSTB LTR MaLR 0 426 1 346 295 82 76 chr13 44665137 44665639 -75079259 + L1MC/D LINE L1 5266 5770 -2038 328 243 9 54 chr13 44665647 44665758 -75079140 - LTR33A LTR ERVL 0 523 418 261 0 0 0 chr13 44665907 44665936 -75078962 + (TC)n Simple_repeat Simple_repeat 2 30 0 239 180 144 77 chr13 44666198 44666331 -75078567 + MLT1I LTR MaLR 96 139 -270 512 234 84 45 chr13 44666365 44666535 -75078363 + MLT1H LTR MaLR 322 510 -39 984 217 68 5 chr13 44666535 44666742 -75078156 - MER58A DNA MER1_type -2 222 3 512 234 84 45 chr13 44666742 44666782 -75078116 + MLT1H LTR MaLR 510 547 -2 258 250 25 12 chr13 44667996 44668076 -75076822 + (CATATA)n Simple_repeat Simple_repeat 1 81 0 1160 183 0 38 chr13 44668160 44668373 -75076525 - AluJo SINE Alu -23 289 85 548 220 16 14 chr13 44669061 44669171 -75075727 + L1PB4 LINE L1 6024 6133 -33 2255 124 156 13 chr13 44669171 44669543 -75075355 - MSTA LTR MaLR 0 428 4 548 220 16 14 chr13 44669543 44669574 -75075324 + L1PB4 LINE L1 6133 6162 -4 1772 167 48 12 chr13 44669755 44670090 -75074808 - THE1C LTR MaLR 0 375 29 393 274 232 12 chr13 44670321 44670489 -75074409 + MIR SINE MIR 2 206 -56 5966 54 1 0 chr13 44671498 44672183 -75072715 - L1PA7 LINE L1 -3 6151 5466 1982 158 3 0 chr13 44672217 44672688 -75072210 - AluSx SINE Alu 0 312 1 198 0 0 0 chr13 44672747 44672769 -75072129 + (T)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr13 44672773 44672798 -75072100 + AT_rich Low_complexity Low_complexity 1 25 0 44095 47 0 9 chr13 44672798 44678992 -75065906 - L1PA3 LINE L1 -7 6148 9 191 254 8 110 chr13 44679806 44679924 -75064974 - MIR SINE MIR -45 217 112 2193 121 0 7 chr13 44680445 44680751 -75064147 - AluSx SINE Alu -8 304 1 1661 188 46 56 chr13 44681978 44682371 -75062527 - MSTD LTR MaLR 0 396 8 228 86 0 0 chr13 44682654 44682689 -75062209 + (TC)n Simple_repeat Simple_repeat 2 36 0 630 195 30 67 chr13 44683264 44683482 -75061416 + MER106B DNA MER1_type 22 1058 -1 251 212 0 15 chr13 44683726 44683792 -75061106 + GA-rich Low_complexity Low_complexity 3 67 0 2536 47 0 13 chr13 44684133 44684431 -75060467 - AluY SINE Alu -17 294 1 308 282 34 34 chr13 44685477 44685594 -75059304 + MIR SINE MIR 34 150 -112 373 240 20 10 chr13 44685864 44685964 -75058934 - MLT1J2 LTR MaLR -287 163 63 453 36 0 0 chr13 44687515 44687570 -75057328 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 2206 125 0 3 chr13 44687570 44687874 -75057024 - AluSq SINE Alu -6 307 5 2309 98 3 0 chr13 44688015 44688322 -75056576 - AluSp SINE Alu -5 308 1 203 229 55 101 chr13 44688338 44688447 -75056451 + MER5A DNA MER1_type 64 167 -22 509 263 133 78 chr13 44688470 44688691 -75056207 + LTR33 LTR ERVL 1 249 -272 4047 134 123 7 chr13 44688691 44689428 -75055470 - LTR1B LTR ERV1 -2 824 2 509 263 133 78 chr13 44689428 44689552 -75055346 + LTR33 LTR ERVL 249 365 -156 1340 159 0 0 chr13 44691087 44691288 -75053610 + AluJb SINE Alu 111 311 -1 908 296 71 24 chr13 44691297 44691706 -75053192 + Charlie7 DNA MER1_type 89 516 -2096 741 259 123 13 chr13 44691737 44692054 -75052844 + Charlie7 DNA MER1_type 615 966 -1646 1074 262 118 32 chr13 44692062 44692281 -75052617 + L2 LINE L2 2219 2418 -895 502 43 0 0 chr13 44692281 44692350 -75052548 + L1PA2 LINE L1 6087 6155 0 1074 262 118 32 chr13 44692350 44693134 -75051764 + L2 LINE L2 2418 3313 0 1157 266 125 20 chr13 44693138 44693586 -75051312 + Charlie7 DNA MER1_type 977 1471 -1141 730 179 8 0 chr13 44693592 44693709 -75051189 + AluJ SINE Alu 2 119 -193 199 0 0 61 chr13 44693830 44693863 -75051035 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1048 147 6 6 chr13 44693867 44694023 -75050875 + AluJ SINE Alu 129 284 -28 1832 297 43 91 chr13 44694073 44694621 -75050277 + Charlie7 DNA MER1_type 1487 2060 -552 3202 63 55 26 chr13 44694621 44695078 -75049820 + L1PB2 LINE L1 5680 6149 -2 560 202 8 8 chr13 44695078 44695193 -75049705 - L1MB7 LINE L1 -18 6166 6038 1832 297 43 91 chr13 44695193 44695682 -75049216 + Charlie7 DNA MER1_type 2058 2543 -69 2540 61 0 3 chr13 44695684 44695981 -75048917 + AluY SINE Alu 1 296 -15 201 74 0 0 chr13 44695981 44696008 -75048890 + (TA)n Simple_repeat Simple_repeat 1 27 0 292 338 69 10 chr13 44697608 44697805 -75047093 - MIR SINE MIR -14 248 35 692 179 112 31 chr13 44697849 44698045 -75046853 + MIR SINE MIR 51 262 0 202 182 0 45 chr13 44698122 44698166 -75046732 + CT-rich Low_complexity Low_complexity 4 45 0 2054 130 3 7 chr13 44698241 44698540 -75046358 + AluSx SINE Alu 1 298 -14 270 275 143 37 chr13 44698610 44698799 -75046099 - MIR SINE MIR -34 228 20 215 279 35 35 chr13 44700756 44700828 -75044070 - MIR SINE MIR -57 151 80 1629 183 79 28 chr13 44700828 44701184 -75043714 + MLT1A2 LTR MaLR 1 374 0 215 279 35 35 chr13 44701184 44701197 -75043701 - MIR SINE MIR -127 81 69 2380 97 64 11 chr13 44701279 44701639 -75043259 - L1PA11 LINE L1 0 6174 5796 1802 216 68 7 chr13 44702638 44703078 -75041820 + MLT1C LTR MaLR 1 467 0 2051 148 3 0 chr13 44703316 44703613 -75041285 - AluSx SINE Alu -14 298 1 3266 184 21 2 chr13 44703627 44704231 -75040667 + L1MB2 LINE L1 5478 6093 -78 1837 68 63 0 chr13 44704992 44705229 -75039669 - AluY SINE Alu -11 300 49 298 360 20 0 chr13 44705422 44705575 -75039323 - LTR38-int LTR ERV1 -525 4429 4274 6302 187 67 72 chr13 44705973 44709154 -75035744 - LTR38-int LTR ERV1 -708 4415 885 507 173 0 0 chr13 44709153 44709234 -75035664 - LTR38-int LTR ERV1 -498 1288 1208 * 430 195 63 14 chr13 44709227 44709421 -75035477 - LTR57-int LTR ERVL -4636 707 438 * 500 236 58 42 chr13 44710099 44710290 -75034608 - LTR45B LTR ERV1 0 489 296 478 244 57 52 chr13 44710682 44710875 -75034023 + LTR45B LTR ERV1 296 489 0 306 225 70 0 chr13 44710875 44710941 -75033957 + MER21B LTR ERV1 681 751 -112 343 276 32 8 chr13 44711894 44712017 -75032881 + MIR3 SINE MIR 81 206 -2 422 127 0 0 chr13 44716326 44716389 -75028509 - MER116 DNA Mariner -16 64 2 242 229 117 10 chr13 44717083 44717180 -75027718 - MIR SINE MIR -46 162 56 220 313 40 13 chr13 44717979 44718129 -75026769 - MIR3 SINE MIR -8 200 47 858 204 82 66 chr13 44718384 44718688 -75026210 + L1MC5 LINE L1 7605 7913 -48 426 291 26 7 chr13 44718838 44718989 -75025909 + MIR SINE MIR 99 252 -10 2298 68 4 7 chr13 44719138 44719460 -75025438 + AluSc SINE Alu 2 322 0 243 253 0 38 chr13 44720171 44720250 -75024648 - MIR SINE MIR -56 206 131 316 331 45 25 chr13 44720266 44720423 -75024475 - MIR3 SINE MIR -21 187 28 383 223 36 18 chr13 44720487 44720599 -75024299 + MER5A DNA MER1_type 28 141 -48 182 262 79 56 chr13 44720498 44720624 -75024274 - MER5B DNA MER1_type -28 150 22 * 382 347 59 23 chr13 44721098 44721317 -75023581 - MIR SINE MIR -31 231 5 2388 209 109 20 chr13 44721324 44721912 -75022986 - MER82 DNA MER2_type -7 646 7 243 0 0 0 chr13 44723466 44723493 -75021405 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 3328 129 30 60 chr13 44723500 44724136 -75020762 - L1MC1 LINE L1 -5 6328 5712 296 301 7 34 chr13 44724140 44724286 -75020612 + CT-rich Low_complexity Low_complexity 1 142 0 1009 178 31 11 chr13 44724343 44724534 -75020364 - MER20 DNA MER1_type 0 219 25 326 250 53 53 chr13 44724603 44724755 -75020143 - MER103 DNA DNA -12 154 3 750 250 11 0 chr13 44725043 44725219 -75019679 - MER5B DNA MER1_type 0 178 1 1939 130 35 7 chr13 44725709 44725994 -75018904 + AluJb SINE Alu 1 293 -19 4599 151 34 52 chr13 44727008 44727928 -75016970 + MER4D LTR ERV1 1 903 0 314 392 75 7 chr13 44728914 44729192 -75015706 + L2 LINE L2 2496 2792 -522 1524 163 115 9 chr13 44729423 44729761 -75015137 + MLT1A2 LTR MaLR 1 374 0 713 273 65 26 chr13 44729902 44730032 -75014866 + MIR SINE MIR 23 167 -95 1816 236 84 12 chr13 44730032 44730544 -75014354 - MLT1H LTR MaLR 0 549 1 713 273 65 26 chr13 44730544 44730644 -75014254 + MIR SINE MIR 167 262 0 306 292 21 0 chr13 44730825 44730921 -75013977 + MIR SINE MIR 165 262 0 539 128 0 0 chr13 44731132 44731210 -75013688 + MADE1 DNA Mariner 3 80 0 2275 91 0 7 chr13 44731227 44731535 -75013363 + AluY SINE Alu 1 306 0 306 261 158 67 chr13 44731539 44731869 -75013029 - L1MC5 LINE L1 -95 7866 7507 208 327 0 37 chr13 44732789 44732896 -75012002 + L2 LINE L2 2665 2767 -547 213 368 110 0 chr13 44733175 44733311 -75011587 + L2 LINE L2 2937 3087 -185 267 146 0 0 chr13 44733461 44733502 -75011396 + L2 LINE L2 3213 3253 -19 312 27 0 0 chr13 44734016 44734053 -75010845 + (CA)n Simple_repeat Simple_repeat 1 37 0 1360 158 85 95 chr13 44734466 44734829 -75010069 - MLT2B1 LTR ERVL -104 411 1 274 216 39 13 chr13 44735247 44735400 -75009498 + (TA)n Simple_repeat Simple_repeat 2 158 0 570 249 163 20 chr13 44735565 44735810 -75009088 - L2 LINE L2 0 3313 3034 1678 192 83 3 chr13 44735837 44736175 -75008723 - MLT1A1 LTR MaLR 0 365 1 3901 173 58 4 chr13 44736202 44736921 -75007977 - L1MCa LINE L1 -5649 777 20 336 264 138 0 chr13 44736940 44737107 -75007791 - L2 LINE L2 -254 3018 2829 216 0 0 0 chr13 44737207 44737231 -75007667 + (A)n Simple_repeat Simple_repeat 1 24 0 2401 88 3 0 chr13 44737307 44737604 -75007294 + AluSq SINE Alu 1 298 -15 2190 104 0 0 chr13 44738079 44738359 -75006539 + AluSx SINE Alu 1 280 -32 218 29 59 0 chr13 44738366 44738400 -75006498 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 785 236 0 6 chr13 44738985 44739150 -75005748 - FRAM SINE Alu -2 164 1 719 293 128 18 chr13 44739292 44739627 -75005271 - MLT1D LTR MaLR -133 372 1 189 0 0 0 chr13 44740431 44740452 -75004446 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 582 251 14 65 chr13 44740631 44740846 -75004052 + MIR SINE MIR 9 212 -50 1452 167 62 23 chr13 44740992 44741250 -75003648 - 7SLRNA srpRNA srpRNA -10 310 43 2235 107 13 0 chr13 44741263 44741561 -75003337 - AluSx SINE Alu -10 302 1 270 220 0 0 chr13 44741563 44741613 -75003285 - AluSg/x SINE Alu -115 187 138 626 267 54 33 chr13 44743372 44743612 -75001286 + MLT1J LTR MaLR 217 461 -50 922 287 36 58 chr13 44744324 44744553 -75000345 - MLT1I LTR MaLR 0 409 191 718 153 112 182 chr13 44744553 44744719 -75000179 - MER33 DNA MER1_type -2261 324 193 2500 67 0 3 chr13 44744719 44745018 -74999880 + AluY SINE Alu 1 298 -13 718 153 112 182 chr13 44745018 44745198 -74999700 - MER33 DNA MER1_type -2392 193 2 922 287 36 58 chr13 44745198 44745379 -74999519 - MLT1I LTR MaLR -218 191 8 2234 8 0 0 chr13 44745875 44746112 -74998786 - AluYb8 SINE Alu -8 310 74 2984 163 19 30 chr13 44746435 44746999 -74997899 - MER74A LTR ERVL 0 558 1 913 256 48 24 chr13 44748263 44748513 -74996385 - MIR SINE MIR 0 262 7 605 178 37 0 chr13 44748844 44748951 -74995947 - MLT1I LTR MaLR -3 406 296 2320 104 0 7 chr13 44749333 44749640 -74995258 + AluSx SINE Alu 6 310 -2 235 279 14 16 chr13 44750261 44750340 -74994558 + MIR SINE MIR 29 107 -101 2301 101 3 0 chr13 44751332 44751628 -74993270 - AluSx SINE Alu -15 297 1 1490 301 69 38 chr13 44752252 44753005 -74991893 + L2 LINE L2 2292 3077 -236 2583 49 0 0 chr13 44753005 44753312 -74991586 + AluY SINE Alu 1 307 -4 1490 301 69 38 chr13 44753312 44753500 -74991398 + L2 LINE L2 3077 3258 -55 249 119 0 0 chr13 44753519 44753561 -74991337 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 1563 245 102 47 chr13 44754419 44754978 -74989920 + MLT1G LTR MaLR 1 590 0 272 296 173 12 chr13 44754991 44755153 -74989745 + MIR SINE MIR 21 208 -54 763 262 28 14 chr13 44755574 44755788 -74989110 + MIR SINE MIR 20 236 -26 303 293 179 7 chr13 44755812 44755952 -74988946 + MER5A DNA MER1_type 20 183 -6 2194 117 0 28 chr13 44756374 44756691 -74988207 - AluSx SINE Alu 0 312 5 700 294 57 11 chr13 44758713 44758978 -74985920 - L1ME4a LINE L1 -234 5887 5611 1830 214 74 36 chr13 44759023 44759082 -74985816 - MER39 LTR ERV1 0 707 652 3021 160 65 24 chr13 44759082 44759701 -74985197 - LTR48B LTR ERV1 0 644 1 1830 214 74 36 chr13 44759701 44760183 -74984715 - MER39 LTR ERV1 -55 652 6 625 175 16 104 chr13 44760451 44760519 -74984379 + MER96B DNA MER1_type? 250 322 -95 1394 209 84 23 chr13 44760519 44760863 -74984035 - MLT1A1 LTR MaLR 0 365 1 625 175 16 104 chr13 44760863 44760977 -74983921 + MER96B DNA MER1_type? 322 416 -1 2201 122 18 42 chr13 44761658 44762042 -74982856 - THE1C LTR MaLR 0 375 1 215 130 0 43 chr13 44762047 44762093 -74982805 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 3495 70 5 0 chr13 44762106 44762546 -74982352 - MLT2A1 LTR ERVL -2 442 1 2654 63 11 0 chr13 44762546 44762894 -74982004 - HERVL-A1 LTR ERVL 0 5654 5303 43619 64 7 3 chr13 44763049 44768374 -74976524 - HERVL-A1 LTR ERVL -306 5348 1 3092 75 58 0 chr13 44768374 44768790 -74976108 - MLT2A1 LTR ERVL 0 444 5 1566 180 26 7 chr13 44768793 44769065 -74975833 - AluJb SINE Alu -35 277 1 282 237 193 0 chr13 44769069 44769183 -74975715 + MIR SINE MIR 117 252 -10 323 285 58 22 chr13 44769185 44769322 -74975576 + MLT1J LTR MaLR 1 142 -369 206 247 94 24 chr13 44769338 44769423 -74975475 - MIR3 SINE MIR -3 205 115 * 467 193 155 68 chr13 44769406 44769518 -74975380 + MER5A DNA MER1_type 15 147 -42 1580 172 6 63 chr13 44769518 44769849 -74975049 + AluJo SINE Alu 1 312 0 467 193 155 68 chr13 44769849 44769897 -74975001 + MER5A DNA MER1_type 147 189 0 403 278 9 28 chr13 44770701 44770809 -74974089 + MLT1L LTR MaLR 2 107 -508 371 271 10 85 chr13 44770863 44771062 -74973836 + L2 LINE L2 3113 3296 -17 244 239 43 54 chr13 44771083 44771175 -74973723 - L2 LINE L2 0 3272 3182 323 224 15 119 chr13 44771207 44771341 -74973557 + MER21B LTR ERV1 329 448 -415 256 0 24 49 chr13 44772013 44772054 -74972844 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2603 108 23 83 chr13 44772964 44773436 -74971462 - MER65A LTR ERV1 0 445 2 190 280 80 40 chr13 44773467 44773542 -74971356 - L2 LINE L2 -8 3264 3187 232 287 123 0 chr13 44773678 44773800 -74971098 - L2 LINE L2 -211 3061 2925 1983 163 34 0 chr13 44773821 44774176 -74970722 - MER34B LTR ERV1 0 565 199 2990 184 105 5 chr13 44774176 44774875 -74970023 + MER21B LTR ERV1 1 802 -61 1440 96 41 5 chr13 44774928 44775148 -74969750 - MER34B LTR ERV1 -361 204 1 497 251 33 20 chr13 44775485 44775758 -74969140 - MER20B DNA MER1_type -74 709 396 1625 182 27 90 chr13 44776241 44776495 -74968403 + MER31B LTR ERV1 7 275 -386 1661 179 7 13 chr13 44776495 44776797 -74968101 - AluJb SINE Alu -12 300 1 1625 182 27 90 chr13 44776797 44777019 -74967879 + MER31B LTR ERV1 275 648 -13 201 39 0 0 chr13 44777228 44777254 -74967644 + (TTG)n Simple_repeat Simple_repeat 2 27 0 198 0 0 0 chr13 44778657 44778679 -74966219 + (A)n Simple_repeat Simple_repeat 1 22 0 3166 156 139 38 chr13 44779867 44780571 -74964327 - LTR48 LTR ERV1 -10 777 3 331 197 16 0 chr13 44780590 44780651 -74964247 + LTR67 LTR ERVL 494 555 -2 300 229 33 0 chr13 44780689 44780750 -74964148 + MER91B DNA MER1_type 2 64 -126 1790 241 56 26 chr13 44780989 44781491 -74963407 + MER74B LTR ERVL 56 572 -50 1321 196 5 0 chr13 44782074 44782294 -74962604 + MER58A DNA MER1_type 4 224 0 643 246 63 116 chr13 44782480 44782878 -74962020 + LTR40a LTR ERVL 1 377 -142 878 179 0 27 chr13 44783513 44783697 -74961201 + MER53 DNA DNA 2 180 -9 1639 121 124 8 chr13 44783803 44784083 -74960815 - AluSg SINE Alu -29 281 4 396 298 121 0 chr13 44785329 44785470 -74959428 + MER5A DNA MER1_type 29 186 -3 1401 148 7 1 chr13 44787792 44788097 -74956801 - MER2 DNA MER2_type -1 344 2 * 2035 187 64 10 chr13 44788097 44788503 -74956395 + MER63B DNA MER1_type 8 435 -1 714 293 27 18 chr13 44788659 44788884 -74956014 + MIR SINE MIR 32 258 -4 1669 161 13 17 chr13 44789389 44789687 -74955211 - AluJo SINE Alu -15 297 1 276 332 58 8 chr13 44789844 44789985 -74954913 + MIR SINE MIR 18 146 -62 304 297 135 42 chr13 44791109 44791301 -74953597 + L3b LINE CR1 1120 1329 -254 242 224 0 0 chr13 44792365 44792423 -74952475 + A-rich Low_complexity Low_complexity 1 58 0 378 139 0 0 chr13 44793034 44793106 -74951792 + (TGG)n Simple_repeat Simple_repeat 1 72 0 270 0 0 0 chr13 44793305 44793335 -74951563 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 225 65 0 0 chr13 44793518 44793549 -74951349 + (T)n Simple_repeat Simple_repeat 1 31 0 272 233 137 0 chr13 44793982 44794055 -74950843 - L2 LINE L2 -16 3256 3174 213 321 92 9 chr13 44794133 44794242 -74950656 - MIR SINE MIR -109 153 36 307 292 11 11 chr13 44794642 44794731 -74950167 + (CA)n Simple_repeat Simple_repeat 2 90 0 25 31 0 0 chr13 44795110 44795142 -74949756 + AT_rich Low_complexity Low_complexity 1 32 0 487 233 53 27 chr13 44795451 44795601 -74949297 - MIR SINE MIR -77 185 32 196 243 230 14 chr13 44795670 44795744 -74949154 + MIR SINE MIR 120 209 -53 457 222 111 15 chr13 44796125 44796260 -74948638 - LTR33 LTR ERVL -304 217 70 323 304 182 46 chr13 44796436 44796846 -74948052 - L2 LINE L2 -1 3271 2791 635 25 12 0 chr13 44798458 44798539 -74946359 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 1949 144 0 0 chr13 44798542 44798826 -74946072 - AluSx SINE Alu -28 284 1 181 270 191 0 chr13 44799694 44799757 -74945141 + L2 LINE L2 3158 3232 -40 1664 151 65 0 chr13 44800019 44800310 -74944588 + AluJb SINE Alu 1 310 -2 272 264 82 27 chr13 44800326 44800436 -74944462 + L2 LINE L2 3179 3294 -19 331 87 0 0 chr13 44800437 44800483 -74944415 + MADE1 DNA Mariner 1 46 -34 207 0 0 0 chr13 44800493 44800516 -74944382 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 772 320 114 20 chr13 44801100 44801450 -74943448 + MER115 DNA AcHobo 75 457 -236 1979 141 0 0 chr13 44801480 44801777 -74943121 - AluSq SINE Alu -16 297 1 547 275 27 0 chr13 44801777 44801926 -74942972 + MER115 DNA AcHobo 541 693 0 343 304 51 43 chr13 44802617 44802755 -74942143 + L2 LINE L2 3134 3272 0 205 250 213 0 chr13 44802788 44802868 -74942030 + L2 LINE L2 2540 2636 -678 1107 210 126 43 chr13 44802868 44803216 -74941682 + MLT1D LTR MaLR 1 377 -128 1096 98 0 0 chr13 44803216 44803359 -74941539 - AluSg/x SINE Alu -16 296 154 2683 97 8 3 chr13 44803568 44803930 -74940968 + THE1B LTR MaLR 1 364 0 1628 199 122 99 chr13 44804074 44804723 -74940175 - LTR49-int LTR ERV1 -5208 1123 460 712 125 0 27 chr13 44804734 44804846 -74940052 + LTR40a LTR ERVL 404 512 -7 1527 226 63 53 chr13 44804853 44805363 -74939535 + L1ME3 LINE L1 5646 6160 -2 496 245 157 25 chr13 44806699 44806858 -74938040 - MER5A DNA MER1_type 0 189 10 352 298 57 16 chr13 44807455 44807579 -74937319 - L2 LINE L2 -2 3311 3183 1181 233 8 4 chr13 44807692 44807954 -74936944 + MER93a LTR ERV1 139 401 -1 219 341 82 22 chr13 44808369 44808504 -74936394 + MIR SINE MIR 61 203 -59 373 338 25 20 chr13 44808607 44808805 -74936093 - MIR SINE MIR -43 219 21 396 293 31 16 chr13 44809156 44809347 -74935551 - L1ME4a LINE L1 -2 6119 5926 2190 103 3 6 chr13 44811142 44811453 -74933445 + AluSx SINE Alu 1 310 -2 2197 89 10 0 chr13 44811909 44812201 -74932697 + AluSq SINE Alu 1 295 -18 183 80 0 0 chr13 44812382 44812407 -74932491 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 254 283 59 138 chr13 44812430 44812734 -74932164 - L2 LINE L2 -50 3222 2943 21 36 0 0 chr13 44813182 44813210 -74931688 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr13 44813282 44813320 -74931578 + AT_rich Low_complexity Low_complexity 1 38 0 1712 174 20 0 chr13 44813375 44813674 -74931224 + L1MB7 LINE L1 5828 6132 -52 * 6497 161 30 5 chr13 44813667 44814083 -74930815 + L1PA16 LINE L1 3974 4378 -1788 423 0 0 0 chr13 44814083 44814130 -74930768 + (CA)n Simple_repeat Simple_repeat 2 48 0 6497 161 30 5 chr13 44814130 44815854 -74929044 + L1PA16 LINE L1 4378 6165 -1 366 274 50 13 chr13 44815941 44816100 -74928798 + L1ME4a LINE L1 4032 4196 -1950 589 302 109 30 chr13 44816199 44816603 -74928295 + L1ME4a LINE L1 4395 4830 -1316 3431 169 38 92 chr13 44816925 44817846 -74927052 - MER63C DNA MER1_type -24 906 36 340 236 128 24 chr13 44818725 44818975 -74925923 + L1ME4a LINE L1 5843 6118 -3 551 273 164 9 chr13 44820116 44820336 -74924562 + MIR SINE MIR 2 255 -7 1083 149 0 0 chr13 44820592 44820760 -74924138 - AluJb SINE Alu -22 290 123 340 279 29 69 chr13 44821324 44821548 -74923350 - MIR SINE MIR -22 240 19 219 125 0 0 chr13 44821781 44821821 -74923077 + (CA)n Simple_repeat Simple_repeat 2 41 0 1669 205 16 32 chr13 44822622 44822686 -74922212 - MLT1A2 LTR MaLR -2 372 308 500 100 0 12 chr13 44822686 44822766 -74922132 - MADE1 DNA Mariner -1 79 1 1669 205 16 32 chr13 44822766 44823076 -74921822 - MLT1A2 LTR MaLR -66 308 4 2471 56 0 3 chr13 44823076 44823381 -74921517 + AluY SINE Alu 1 304 -7 294 285 68 104 chr13 44823431 44823680 -74921218 - L2 LINE L2 -99 3173 2934 520 77 0 121 chr13 44823813 44823852 -74921046 + MADE1 DNA Mariner 1 24 -56 2028 114 10 0 chr13 44823852 44824142 -74920756 - AluSx SINE Alu -19 293 1 520 77 0 121 chr13 44824142 44824193 -74920705 + MADE1 DNA Mariner 24 80 0 2352 140 22 16 chr13 44824279 44824650 -74920248 + MLT2D LTR ERVL 2 374 -40 183 156 0 0 chr13 44824653 44824685 -74920213 + (TATG)n Simple_repeat Simple_repeat 3 34 0 467 279 64 6 chr13 44825092 44825264 -74919634 - MIR SINE MIR -67 195 14 454 267 25 0 chr13 44826119 44826239 -74918659 + MIR SINE MIR 116 238 -24 1806 163 81 0 chr13 44826257 44826577 -74918321 + MER7A DNA MER2_type 2 345 -1 1047 184 27 68 chr13 44826577 44826868 -74918030 + MLT1D LTR MaLR 72 350 -155 306 236 97 0 chr13 44826888 44826960 -74917938 - MIR SINE MIR -58 204 126 1232 257 43 3 chr13 44827147 44827450 -74917448 + LTR16C LTR ERVL 177 491 0 1988 199 68 19 chr13 44827529 44828001 -74916897 - MLT1D LTR MaLR -8 497 3 261 242 99 22 chr13 44828050 44828141 -74916757 - L2 LINE L2 -50 3263 3166 226 290 101 57 chr13 44828193 44828441 -74916457 + MLT1J LTR MaLR 253 511 0 1396 255 79 18 chr13 44828866 44828947 -74915951 + MER115 DNA AcHobo 160 235 -458 1250 176 58 105 chr13 44828947 44829328 -74915570 - MLT1A1 LTR MaLR -2 363 1 1396 255 79 18 chr13 44829328 44829701 -74915197 + MER115 DNA AcHobo 235 642 -51 1561 175 153 41 chr13 44830130 44830548 -74914350 + MLT1C LTR MaLR 3 467 0 250 197 66 0 chr13 44830631 44830692 -74914206 + L2 LINE L2 3238 3302 -11 306 0 0 0 chr13 44831640 44831674 -74913224 + (TA)n Simple_repeat Simple_repeat 2 35 0 360 188 135 23 chr13 44831675 44831808 -74913090 + L1ME4a LINE L1 5971 6118 -3 281 323 115 0 chr13 44832118 44832248 -74912650 - L3b LINE CR1 -188 1395 1251 644 246 29 23 chr13 44832297 44832468 -74912430 - MER5B DNA MER1_type -6 172 1 305 182 0 0 chr13 44832968 44833023 -74911875 + MIR SINE MIR 83 137 -125 739 130 9 0 chr13 44833054 44833169 -74911729 - L1PA16 LINE L1 -18 6148 6033 204 299 58 36 chr13 44833214 44833351 -74911547 - MIR SINE MIR -74 188 49 480 238 8 66 chr13 44833622 44833744 -74911154 + MER5B DNA MER1_type 64 178 0 595 51 0 0 chr13 44833943 44834021 -74910877 + Alu SINE Alu 228 305 -4 545 335 143 30 chr13 44835070 44835440 -74909458 + L2 LINE L2 2887 3298 -15 1143 113 0 0 chr13 44835442 44835679 -74909219 + (TGGA)n Simple_repeat Simple_repeat 1 237 0 182 256 0 0 chr13 44835859 44835898 -74909000 - L2 LINE L2 -97 3175 3137 530 287 92 35 chr13 44836300 44836656 -74908242 + MLT1J LTR MaLR 209 509 -2 655 161 188 7 chr13 44837050 44837199 -74907699 + MER45A DNA AcHobo 1 176 -2 483 256 58 7 chr13 44837202 44837339 -74907559 + MIR SINE MIR 65 208 -54 192 250 19 0 chr13 44837533 44837585 -74907313 + L2 LINE L2 3220 3272 0 294 311 8 8 chr13 44838239 44838361 -74906537 - MIR SINE MIR -74 188 67 732 169 19 106 chr13 44838392 44838482 -74906416 - L1ME3 LINE L1 -29 6133 6070 1945 137 0 20 chr13 44838482 44838774 -74906124 + AluJo SINE Alu 1 286 -26 732 169 19 106 chr13 44838774 44838890 -74906008 - L1ME3 LINE L1 -92 6070 5945 1273 284 93 21 chr13 44839096 44839697 -74905201 - MER115 DNA AcHobo 0 693 5 2130 117 0 0 chr13 44840058 44840402 -74904496 + AluSx SINE Alu 1 344 0 529 282 25 49 chr13 44840647 44840892 -74904006 - L2 LINE L2 0 3313 3075 186 221 232 11 chr13 44840935 44841030 -74903868 - L2 LINE L2 -18 3295 3180 3225 184 52 6 chr13 44841338 44842027 -74902871 - L1MB4 LINE L1 0 6180 5460 315 71 0 0 chr13 44842628 44842670 -74902228 + (CA)n Simple_repeat Simple_repeat 2 43 0 305 254 43 87 chr13 44842781 44842966 -74901932 - MIR SINE MIR -51 211 35 180 176 0 0 chr13 44843163 44843197 -74901701 + A-rich Low_complexity Low_complexity 1 34 0 762 183 62 52 chr13 44843926 44844130 -74900768 + MIR SINE MIR 41 251 -11 802 234 82 20 chr13 44844612 44844856 -74900042 - MIR SINE MIR 0 262 4 225 253 13 40 chr13 44845131 44845206 -74899692 - L2 LINE L2 0 3272 3200 1529 117 0 0 chr13 44845391 44845597 -74899301 + L1PA11 LINE L1 5665 5870 -304 2269 86 40 20 chr13 44845603 44845953 -74898945 + L1PA11 LINE L1 5817 6173 -1 685 160 0 53 chr13 44846608 44846796 -74898102 + GA-rich Low_complexity Low_complexity 3 180 0 366 329 99 9 chr13 44846814 44847027 -74897871 - MIR SINE MIR -6 256 25 263 320 107 0 chr13 44847299 44847402 -74897496 - MIR SINE MIR -58 150 37 200 233 0 0 chr13 44848372 44848415 -74896483 + T-rich Low_complexity Low_complexity 1 43 0 2383 92 0 0 chr13 44848712 44849017 -74895881 + AluY SINE Alu 1 305 -6 2039 131 3 0 chr13 44849137 44849427 -74895471 + AluSx SINE Alu 1 291 -21 622 224 101 22 chr13 44849450 44849629 -74895269 + MIR SINE MIR 65 257 -5 423 196 93 0 chr13 44849648 44849745 -74895153 - LTR16C LTR ERVL -1 490 385 291 269 177 14 chr13 44850025 44850166 -74894732 + MIR SINE MIR 63 226 -36 207 293 0 24 chr13 44851132 44851214 -74893684 + MIR SINE MIR 47 126 -82 224 280 224 84 chr13 44851441 44851517 -74893381 - MIR SINE MIR -1 261 197 1817 147 7 20 chr13 44851517 44851809 -74893089 - AluJo SINE Alu -24 288 1 224 280 224 84 chr13 44851809 44851946 -74892952 - MIR SINE MIR -65 197 18 243 0 0 0 chr13 44852196 44852223 -74892675 + (TG)n Simple_repeat Simple_repeat 2 28 0 12172 131 50 9 chr13 44853024 44854959 -74889939 + Ricksha_c DNA DNA 8 2021 -25 2462 88 0 0 chr13 44855243 44855551 -74889347 - AluSq SINE Alu -5 308 1 288 111 0 0 chr13 44856777 44856822 -74888076 + (TG)n Simple_repeat Simple_repeat 2 46 0 191 369 18 0 chr13 44858704 44858815 -74886083 - MIR SINE MIR -63 145 33 405 0 0 0 chr13 44860081 44860126 -74884772 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 206 16 79 chr13 44862840 44862903 -74881995 + L2 LINE L2 3177 3235 -78 3309 163 20 18 chr13 44863063 44863666 -74881232 - L1MC1 LINE L1 -3 6330 5727 318 180 34 67 chr13 44863666 44863755 -74881143 - L1MC1 LINE L1 -1160 4986 4901 2881 213 18 3 chr13 44863756 44864382 -74880516 - L1MC1 LINE L1 -1714 4432 3798 214 250 15 15 chr13 44864405 44864473 -74880425 + MIR SINE MIR 84 151 -111 318 316 85 11 chr13 44865019 44865196 -74879702 + MIR SINE MIR 37 226 -36 180 0 0 0 chr13 44865226 44865246 -74879652 + (CAT)n Simple_repeat Simple_repeat 2 21 0 2050 246 63 35 chr13 44865278 44865843 -74879055 + L1ME3A LINE L1 5488 6075 -95 2377 186 31 7 chr13 44865843 44866299 -74878599 + MLT1C LTR MaLR 1 467 0 2050 246 63 35 chr13 44866299 44866387 -74878511 + L1ME3A LINE L1 6075 6159 -11 283 202 125 87 chr13 44866720 44866824 -74878074 + L1M3c LINE L1 1 108 -6033 362 167 0 14 chr13 44866825 44866897 -74878001 + L1MA10 LINE L1 6262 6332 -2 211 189 45 36 chr13 44867011 44867122 -74877776 + (TATAA)n Simple_repeat Simple_repeat 3 114 0 474 253 52 105 chr13 44867260 44867489 -74877409 - MIR SINE MIR 0 262 46 572 216 34 110 chr13 44867523 44867600 -74877298 + L1ME4a LINE L1 5539 5620 -501 2081 137 7 0 chr13 44867600 44867893 -74877005 - AluSx SINE Alu -17 295 1 572 216 34 110 chr13 44867893 44868143 -74876755 + L1ME4a LINE L1 5620 5841 -280 * 618 284 126 13 chr13 44868135 44868589 -74876309 + L1MC4a LINE L1 5664 6168 -1640 1841 222 93 38 chr13 44868830 44869326 -74875572 + MLT1F1 LTR MaLR 45 567 0 304 281 141 0 chr13 44869329 44869457 -74875441 + MLT1F1-int LTR MaLR 5 150 -1221 2399 77 31 6 chr13 44869546 44869871 -74875027 + L1PA8 LINE L1 5835 6167 -5 289 111 22 0 chr13 44870237 44870282 -74874616 - AluSp/q SINE Alu -72 231 186 520 227 45 148 chr13 44870290 44870620 -74874278 + MLT1F1-int LTR MaLR 1074 1369 -2 1754 293 25 6 chr13 44870624 44871142 -74873756 + MLT1F1 LTR MaLR 14 541 -26 301 159 14 14 chr13 44871322 44871391 -74873507 + GA-rich Low_complexity Low_complexity 6 74 0 2759 201 50 76 chr13 44871408 44871445 -74873453 + L1MC5 LINE L1 6636 6672 -1289 1750 128 6 62 chr13 44871445 44871765 -74873133 + AluJb SINE Alu 3 304 -8 2759 201 50 76 chr13 44871765 44872581 -74872317 + L1MC5 LINE L1 6672 7467 -494 29 70 0 0 chr13 44872795 44872852 -74872046 + AT_rich Low_complexity Low_complexity 1 57 0 266 73 24 0 chr13 44873740 44873781 -74871117 + (TCC)n Simple_repeat Simple_repeat 1 42 0 321 328 96 0 chr13 44874130 44874307 -74870591 - L1ME LINE L1 -372 5749 5556 2166 139 34 65 chr13 44874808 44875226 -74869672 - MLT2D LTR ERVL -7 407 3 902 295 29 9 chr13 44876064 44876379 -74868519 + L1ME4a LINE L1 5503 5823 -298 2583 144 8 8 chr13 44876460 44876862 -74868036 + MER57A LTR ERV1 2 403 0 234 260 130 8 chr13 44876964 44877087 -74867811 + L1ME4a LINE L1 5981 6118 -3 2177 83 0 0 chr13 44877100 44877365 -74867533 - AluSg SINE Alu -11 299 35 229 278 0 0 chr13 44877807 44877861 -74867037 + (TG)n Simple_repeat Simple_repeat 2 55 0 362 206 15 29 chr13 44879162 44879298 -74865600 + CT-rich Low_complexity Low_complexity 4 137 0 3988 52 19 0 chr13 44880287 44880768 -74864130 - LTR2B LTR ERV1 0 490 1 351 113 0 0 chr13 44881290 44881343 -74863555 + (CA)n Simple_repeat Simple_repeat 2 54 0 1570 190 14 17 chr13 44882540 44882835 -74862063 + AluJo SINE Alu 1 294 -18 572 233 39 73 chr13 44883475 44883681 -74861217 - MER112 DNA MER1_type 0 260 62 2104 132 3 13 chr13 44883705 44884016 -74860882 - AluSx SINE Alu -4 308 1 686 250 28 14 chr13 44884304 44884516 -74860382 - L1ME3A LINE L1 -264 5906 5692 1106 187 9 0 chr13 44884626 44884845 -74860053 - L1 LINE L1 -3275 2871 2651 1839 179 108 56 chr13 44885025 44885546 -74859352 - LTR10A LTR ERV1 -61 548 1 239 250 28 90 chr13 44886203 44886347 -74858551 + MIR SINE MIR 63 197 -65 1239 158 111 88 chr13 44886489 44886543 -74858355 - MLT2C1 LTR ERVL -35 485 434 2170 103 10 0 chr13 44886543 44886844 -74858054 + AluSg SINE Alu 1 304 -6 1239 158 111 88 chr13 44886844 44887003 -74857895 - MLT2C1 LTR ERVL -86 434 280 1590 140 163 35 chr13 44887003 44887081 -74857817 + MLT1B LTR MaLR 4 71 -319 2140 110 7 0 chr13 44887081 44887380 -74857518 - AluSg SINE Alu -8 302 2 1590 140 163 35 chr13 44887380 44887644 -74857254 + MLT1B LTR MaLR 71 390 0 1239 158 111 88 chr13 44887644 44887761 -74857137 - MLT2C1 LTR ERVL -240 280 30 350 263 73 22 chr13 44887739 44887876 -74857022 - MER46C DNA MER2_type -115 223 80 * 558 217 31 0 chr13 44888090 44888219 -74856679 - MIR SINE MIR -70 192 60 280 292 56 56 chr13 44888703 44888864 -74856034 + MIR SINE MIR 50 210 -52 5936 182 24 11 chr13 44889370 44890591 -74854307 + L1 LINE L1 2304 3540 -2606 548 125 11 0 chr13 44891127 44891215 -74853683 - L1MB3 LINE L1 -7 6176 6088 418 289 96 12 chr13 44891516 44891682 -74853216 - MIR SINE MIR -6 256 77 1858 212 21 24 chr13 44893124 44893549 -74851349 - MLT1C LTR MaLR -43 424 1 616 231 0 27 chr13 44893550 44893697 -74851201 - LTR16C LTR ERVL -9 482 340 22 0 0 0 chr13 44893998 44894020 -74850878 + AT_rich Low_complexity Low_complexity 1 22 0 226 245 0 0 chr13 44894204 44894257 -74850641 + L2 LINE L2 3261 3313 0 2280 192 53 13 chr13 44895180 44895284 -74849614 + L1MB5 LINE L1 5690 5788 -386 228 35 0 0 chr13 44895284 44895313 -74849585 + (CA)n Simple_repeat Simple_repeat 1 29 0 2280 192 53 13 chr13 44895313 44895421 -74849477 + L1MB5 LINE L1 5788 5890 -284 2584 133 35 41 chr13 44895421 44895499 -74849399 - MSTB2 LTR MaLR 0 457 380 1765 125 54 4 chr13 44895499 44895778 -74849120 + AluSx SINE Alu 20 312 0 2584 133 35 41 chr13 44895778 44896159 -74848739 - MSTB2 LTR MaLR -77 380 1 2280 192 53 13 chr13 44896159 44896399 -74848499 + L1MB5 LINE L1 5890 6161 -13 420 246 69 91 chr13 44897283 44897458 -74847440 - MIR SINE MIR -71 191 21 1713 143 14 7 chr13 44897794 44898106 -74846792 - AluJb SINE Alu 0 314 1 327 310 169 0 chr13 44898127 44898311 -74846587 + Charlie8 DNA MER1_type 61 275 -2142 189 233 256 0 chr13 44898677 44898763 -74846135 - L2 LINE L2 -4 3268 3161 216 227 91 30 chr13 44899586 44899652 -74845246 + L2 LINE L2 3203 3272 0 2358 39 0 0 chr13 44899927 44900208 -74844690 - AluY SINE Alu -10 301 21 195 42 0 0 chr13 44900537 44900561 -74844337 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 330 268 122 61 chr13 44900940 44901104 -74843794 + MIR SINE MIR 45 218 -44 509 236 45 0 chr13 44901408 44901518 -74843380 - MIR SINE MIR -76 186 72 449 288 89 0 chr13 44901684 44901830 -74843068 + MIR SINE MIR 103 261 -1 207 159 0 43 chr13 44901896 44901965 -74842933 + GA-rich Low_complexity Low_complexity 3 68 0 1982 171 28 6 chr13 44902465 44902822 -74842076 - MLT1A1 LTR MaLR 0 365 1 211 293 13 40 chr13 44904375 44904450 -74840448 - L2 LINE L2 -7 3265 3193 699 155 10 10 chr13 44906265 44906459 -74838439 + CT-rich Low_complexity Low_complexity 1 194 0 256 297 79 10 chr13 44906459 44906560 -74838338 - L2 LINE L2 -17 3255 3148 265 316 46 64 chr13 44906563 44906749 -74838149 + MER5A DNA MER1_type 4 177 -1 197 307 54 108 chr13 44906781 44906947 -74837951 - L2 LINE L2 -150 3122 2966 181 374 55 23 chr13 44907003 44907222 -74837676 - L2 LINE L2 -437 2877 2652 1780 83 14 54 chr13 44907235 44907512 -74837386 - AluY SINE Alu -6 305 40 1534 208 23 32 chr13 44909307 44909653 -74835245 - MER61A LTR ERV1 0 343 1 365 272 88 22 chr13 44909988 44910124 -74834774 + MER20B DNA MER1_type 35 179 -604 2066 110 0 0 chr13 44911512 44911820 -74833078 - AluSx SINE Alu 0 308 1 393 225 14 133 chr13 44911936 44912154 -74832744 - L2 LINE L2 -87 3226 3035 574 172 0 0 chr13 44912280 44912379 -74832519 - MER5A DNA MER1_type -76 113 15 219 288 68 51 chr13 44912382 44912500 -74832398 + L2 LINE L2 3152 3271 -1 332 312 102 37 chr13 44913184 44913399 -74831499 + MIR SINE MIR 28 256 -6 241 258 98 36 chr13 44913647 44913841 -74831057 - L2 LINE L2 -212 3060 2855 204 258 79 11 chr13 44914161 44914250 -74830648 + L2 LINE L2 1608 1702 -1612 763 146 23 15 chr13 44914265 44914395 -74830503 + FLAM_C SINE Alu 3 133 0 392 153 68 51 chr13 44914587 44914705 -74830193 - L1ME4a LINE L1 -41 6080 5961 230 200 20 0 chr13 44914706 44914756 -74830142 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 303 294 132 64 chr13 44914821 44915025 -74829873 - L1ME4a LINE L1 -295 5826 5609 255 31 0 0 chr13 44915025 44915057 -74829841 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1298 159 61 81 chr13 44915059 44915354 -74829544 - AluJo SINE Alu -23 289 1 1799 118 0 0 chr13 44915766 44916020 -74828878 - AluSx SINE Alu -20 292 39 512 318 108 10 chr13 44917215 44917511 -74827387 - L2 LINE L2 -1 3312 2988 284 269 11 32 chr13 44917525 44917618 -74827280 + MIR3 SINE MIR 104 194 -14 1227 216 34 40 chr13 44917784 44918108 -74826790 + L1MB3 LINE L1 5566 5887 -296 794 191 30 50 chr13 44918109 44918308 -74826590 + L1MB3 LINE L1 5989 6183 0 563 259 7 34 chr13 44918783 44918930 -74825968 + MER5A DNA MER1_type 44 186 -3 451 239 128 0 chr13 44920096 44920205 -74824693 - MER45 DNA AcHobo -55 123 1 291 179 0 0 chr13 44920767 44920834 -74824064 + GA-rich Low_complexity Low_complexity 2 68 0 467 305 47 26 chr13 44921425 44921615 -74823283 - L2 LINE L2 0 3313 3120 715 187 58 6 chr13 44921839 44922010 -74822888 + Charlie5 DNA MER1_type 24 203 -2409 2734 149 23 13 chr13 44922019 44922490 -74822408 + L1PA16 LINE L1 5683 6158 -8 621 238 46 11 chr13 44922545 44922728 -74822170 - L1ME4a LINE L1 -749 5397 5201 1800 140 19 7 chr13 44922728 44923036 -74821862 - AluSx SINE Alu 0 312 1 621 238 46 11 chr13 44923036 44923113 -74821785 - L1ME4a LINE L1 -945 5201 5128 253 281 110 0 chr13 44923115 44923197 -74821701 - MIR SINE MIR -49 213 123 196 351 75 11 chr13 44923185 44923279 -74821619 - MIR3 SINE MIR -97 111 12 * 1270 142 109 29 chr13 44924190 44924429 -74820469 + MER52A LTR ERV1 1 258 -1497 1028 188 10 10 chr13 44924397 44924589 -74820309 + MER52A LTR ERV1 361 552 -1203 * 733 162 81 25 chr13 44924646 44924844 -74820054 + Charlie5 DNA MER1_type 2353 2561 -51 311 226 16 0 chr13 44925543 44925605 -74819293 - MER69 DNA AcHobo -3 2523 2461 352 51 39 26 chr13 44925623 44925701 -74819197 + (TA)n Simple_repeat Simple_repeat 1 79 0 1462 146 16 4 chr13 44925703 44925949 -74818949 - AluJo SINE Alu -39 273 25 346 221 74 0 chr13 44925970 44926065 -74818833 - MER69 DNA AcHobo -1098 128 27 834 190 49 12 chr13 44926081 44926244 -74818654 + MER5A DNA MER1_type 21 189 0 * 908 285 16 16 chr13 44926244 44926487 -74818411 + MIR SINE MIR 9 254 -8 17976 123 16 8 chr13 44926487 44926623 -74818275 - Tigger4(Zombi) DNA MER2_type 0 2731 2598 2020 118 0 13 chr13 44926623 44926927 -74817971 + AluSx SINE Alu 1 300 -12 17976 123 16 8 chr13 44926927 44929500 -74815398 - Tigger4(Zombi) DNA MER2_type -133 2598 1 2344 68 0 0 chr13 44929871 44930167 -74814731 + AluY SINE Alu 1 296 -15 1637 173 0 23 chr13 44931372 44931673 -74813225 + AluJo SINE Alu 1 294 -18 1583 186 6 13 chr13 44931702 44932013 -74812885 + AluJb SINE Alu 1 309 -3 21 36 0 0 chr13 44932072 44932100 -74812798 + AT_rich Low_complexity Low_complexity 1 28 0 2109 95 0 48 chr13 44932107 44932423 -74812475 + AluSx SINE Alu 6 306 -6 282 307 149 18 chr13 44932726 44932840 -74812058 + MIR SINE MIR 86 214 -48 454 288 36 14 chr13 44933182 44933321 -74811577 - MIR SINE MIR -115 147 6 1000 176 11 5 chr13 44933325 44933512 -74811386 + MER5A DNA MER1_type 1 188 -1 285 98 0 0 chr13 44933942 44933983 -74810915 + (TA)n Simple_repeat Simple_repeat 1 41 0 400 220 100 10 chr13 44934055 44934155 -74810743 - MER91C DNA MER1_type 0 140 32 1455 178 0 4 chr13 44934588 44934846 -74810052 - AluJo SINE Alu -55 257 1 1214 166 51 75 chr13 44935319 44935614 -74809284 + AluJb SINE Alu 1 288 -24 908 205 67 5 chr13 44935938 44936133 -74808765 - MER58A DNA MER1_type -5 219 13 1667 196 88 37 chr13 44936797 44937174 -74807724 + MLT2B1 LTR ERVL 125 520 0 342 318 121 14 chr13 44937177 44937400 -74807498 - MIR SINE MIR -6 256 10 252 304 103 73 chr13 44937507 44937780 -74807118 - L2 LINE L2 0 3272 2992 411 21 0 0 chr13 44937880 44937928 -74806970 + (TA)n Simple_repeat Simple_repeat 2 49 0 2023 217 58 76 chr13 44937978 44938679 -74806219 - MER20B DNA MER1_type -92 691 3 654 118 62 19 chr13 44938721 44938882 -74806016 - Charlie5 DNA MER1_type -54 2558 2391 1795 151 7 7 chr13 44938898 44939176 -74805722 - AluJo SINE Alu -34 278 1 273 273 0 80 chr13 44940056 44940144 -74804754 + MIR SINE MIR 18 98 -110 242 206 0 0 chr13 44940247 44940310 -74804588 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 321 286 0 0 chr13 44941491 44941638 -74803260 + (CA)n Simple_repeat Simple_repeat 2 148 0 603 169 308 17 chr13 44941641 44941823 -74803075 + L1MD3 LINE L1 6137 7986 -9 381 58 0 0 chr13 44942571 44942623 -74802275 + (GA)n Simple_repeat Simple_repeat 1 52 0 391 200 42 0 chr13 44943401 44943496 -74801402 - L2 LINE L2 -1897 1417 1319 1114 199 100 64 chr13 44944578 44944939 -74799959 - MLT1A2 LTR MaLR 0 374 1 489 336 16 20 chr13 44946657 44946910 -74797988 + HAL1b LINE L1 369 620 -728 2080 123 7 13 chr13 44947273 44947575 -74797323 + AluSq SINE Alu 1 300 -13 2548 155 7 12 chr13 44947622 44948034 -74796864 + MSTA LTR MaLR 19 428 0 2227 125 0 3 chr13 44948399 44948712 -74796186 - AluSx SINE Alu 0 312 1 1341 175 133 51 chr13 44948822 44949250 -74795648 + MER31B LTR ERV1 4 466 0 1663 253 52 55 chr13 44949329 44949969 -74794929 + L1MC5 LINE L1 6696 7333 -628 325 258 152 13 chr13 44950229 44950380 -74794518 + MIR SINE MIR 78 249 -13 1144 251 156 26 chr13 44950494 44950957 -74793941 + LTR67 LTR ERVL 1 523 -34 426 304 214 23 chr13 44950996 44951253 -74793645 - MLT1J2 LTR MaLR -2 448 143 1903 221 37 69 chr13 44951587 44952043 -74792855 - MER92B LTR ERV1 0 636 202 1935 199 15 35 chr13 44952043 44952445 -74792453 + MSTD LTR MaLR 3 396 0 1903 221 37 69 chr13 44952445 44952580 -74792318 - MER92B LTR ERV1 -434 202 64 985 203 0 0 chr13 44953867 44954030 -74790868 - FRAM SINE Alu -3 163 1 27 62 0 0 chr13 44954792 44954840 -74790058 + AT_rich Low_complexity Low_complexity 1 48 0 1838 207 33 5 chr13 44955272 44955363 -74789535 + MER93a LTR ERV1 1 88 -314 2295 108 7 3 chr13 44955363 44955670 -74789228 - AluSq SINE Alu -5 308 1 1838 207 33 5 chr13 44955670 44955969 -74788929 + MER93a LTR ERV1 88 402 0 243 330 48 10 chr13 44956572 44956675 -74788223 - MIR SINE MIR -55 153 47 404 65 52 0 chr13 44956822 44956899 -74787999 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2213 147 18 23 chr13 44957338 44957727 -74787171 - MLT1B LTR MaLR 0 390 4 396 327 132 63 chr13 45009731 45010162 -74734736 + L2 LINE L2 2804 3264 -8 490 304 52 26 chr13 45010241 45010471 -74734427 + MIR SINE MIR 21 256 -6 209 300 0 0 chr13 45011313 45011363 -74733535 + MER5B DNA MER1_type 85 134 -44 2220 228 87 13 chr13 45012295 45012918 -74731980 + L1MD2 LINE L1 5691 6359 0 366 262 90 8 chr13 45012979 45013101 -74731797 + L1MC4a LINE L1 590 721 -5398 * 4187 13 0 0 chr13 45013094 45013566 -74731332 - L1PA3 LINE L1 -285 5870 5399 2452 31 0 7 chr13 45013566 45013896 -74731002 + L1PA3 LINE L1 5865 6155 0 21 0 0 0 chr13 45014060 45014081 -74730817 + AT_rich Low_complexity Low_complexity 1 21 0 425 261 76 0 chr13 45014148 45014305 -74730593 + L1MC4a LINE L1 958 1126 -4993 230 163 0 0 chr13 45014350 45014399 -74730499 + L1MC4a LINE L1 2261 2309 -3820 949 136 130 6 chr13 45014426 45014595 -74730303 - MER46A DNA MER2_type 0 236 47 241 226 16 32 chr13 45014635 45014697 -74730201 + MER46A DNA MER2_type 82 142 -94 * 296 80 300 0 chr13 45014649 45014699 -74730199 - MER46A DNA MER2_type -171 65 1 353 249 98 70 chr13 45014733 45015102 -74729796 + L1MC4a LINE L1 2409 2787 -3342 346 321 36 27 chr13 45015104 45015216 -74729682 + L1MC4a LINE L1 3959 4071 -2058 2664 39 0 3 chr13 45015240 45015552 -74729346 - AluY SINE Alu 0 311 1 349 288 85 9 chr13 45015796 45016008 -74728890 + L1MC4a LINE L1 5660 5887 -1904 227 202 81 10 chr13 45016324 45016423 -74728475 + L1MEd LINE L1 4579 4684 -1445 626 218 0 49 chr13 45018137 45018279 -74726619 + FLAM_A SINE Alu 1 135 -7 214 279 16 0 chr13 45018322 45018383 -74726515 - MIR3 SINE MIR -34 174 113 2168 109 0 0 chr13 45020072 45020382 -74724516 - AluY SINE Alu 0 310 1 1208 163 0 32 chr13 45021904 45022125 -74722773 - MER20 DNA MER1_type -4 215 2 1692 162 18 4 chr13 45022649 45022921 -74721977 - AluJo SINE Alu -30 282 7 376 261 0 0 chr13 45024071 45024159 -74720739 - L2 LINE L2 -1 3312 3225 395 265 51 0 chr13 45024191 45024289 -74720609 - MIR SINE MIR 0 262 160 1361 215 215 34 chr13 45024295 45024326 -74720572 + MLT2B3 LTR ERVL 1 25 -529 813 78 93 16 chr13 45024326 45024455 -74720443 - MER85 DNA T2_type 0 139 1 1361 215 215 34 chr13 45024455 45024892 -74720006 + MLT2B3 LTR ERVL 25 554 0 266 326 226 14 chr13 45025161 45025464 -74719434 - L2 LINE L2 -233 3080 2719 2198 141 82 15 chr13 45025812 45026217 -74718681 + Tigger2a DNA MER2_type 3 434 0 890 134 56 0 chr13 45027548 45027694 -74717204 + MSTB LTR MaLR 273 375 0 1922 179 104 43 chr13 45028259 45028729 -74716169 + Tigger7 DNA MER2_type 28 526 -1961 564 165 0 0 chr13 45028723 45028808 -74716090 + Tigger7 DNA MER2_type 2496 2580 -7 * 21 0 0 0 chr13 45028853 45028874 -74716024 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr13 45029704 45029730 -74715168 + (CA)n Simple_repeat Simple_repeat 2 27 0 2526 164 31 9 chr13 45030027 45030189 -74714709 - Tigger1 DNA MER2_type 0 2418 2261 2289 93 0 13 chr13 45030189 45030490 -74714408 + AluY SINE Alu 1 297 -14 2526 164 31 9 chr13 45030490 45030784 -74714114 - Tigger1 DNA MER2_type -157 2261 1952 1306 206 18 25 chr13 45030784 45031060 -74713838 + AluJb SINE Alu 1 274 -38 275 159 175 0 chr13 45031061 45031124 -74713774 + AluS SINE Alu 221 294 -6 11577 131 26 27 chr13 45031146 45033083 -74711815 - Tigger1 DNA MER2_type -454 1964 30 31 0 0 0 chr13 45033294 45033325 -74711573 + AT_rich Low_complexity Low_complexity 1 31 0 4997 149 21 26 chr13 45033741 45034758 -74710140 + L1MB2 LINE L1 5163 6169 -2 308 209 15 0 chr13 45035493 45035560 -74709338 - L1ME4a LINE L1 -72 6049 5982 1444 202 19 6 chr13 45035603 45035920 -74708978 + L1 LINE L1 4922 5242 -904 189 0 0 0 chr13 45035966 45035987 -74708911 + (TG)n Simple_repeat Simple_repeat 2 22 0 1974 110 0 18 chr13 45036101 45036374 -74708524 + AluSx SINE Alu 24 291 -21 278 255 142 0 chr13 45036578 45036684 -74708214 - L1M4 LINE L1 -1045 5101 4981 312 361 57 5 chr13 45036765 45036959 -74707939 - HAL1b LINE L1 -784 564 361 1595 174 4 0 chr13 45037309 45037568 -74707330 - AluJb SINE Alu -6 306 47 2053 104 35 10 chr13 45037637 45037926 -74706972 + AluSg SINE Alu 1 296 -14 1352 92 34 84 chr13 45037936 45038175 -74706723 + LTR8 LTR ERV1 361 587 -104 234 0 0 0 chr13 45038180 45038206 -74706692 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 700 292 70 59 chr13 45038960 45039402 -74705496 + MLT1J2 LTR MaLR 1 401 -8 213 274 53 88 chr13 45040737 45040850 -74704048 - L2 LINE L2 -20 3293 3185 186 393 56 0 chr13 45041081 45041188 -74703710 - L2 LINE L2 -520 2794 2682 24 0 0 0 chr13 45041464 45041488 -74703410 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 27 chr13 45042421 45042440 -74702458 + AT_rich Low_complexity Low_complexity 1 20 -16 1328 195 57 30 chr13 45042440 45042738 -74702160 + AluJo SINE Alu 2 307 -5 26 0 0 27 chr13 45042738 45042755 -74702143 + AT_rich Low_complexity Low_complexity 20 36 0 275 307 145 17 chr13 45042943 45043122 -74701776 + MIR SINE MIR 20 221 -41 2274 98 0 0 chr13 45044959 45045266 -74699632 + AluSc SINE Alu 1 307 -2 344 290 13 113 chr13 45045831 45045997 -74698901 + L1ME LINE L1 5483 5619 -502 1468 69 0 86 chr13 45045997 45046229 -74698669 - L1PA8 LINE L1 -6 6166 5955 344 290 13 113 chr13 45046229 45046300 -74698598 + L1ME LINE L1 5619 5696 -425 292 330 55 32 chr13 45046677 45046989 -74697909 - L1MC/D LINE L1 -1952 5856 5538 279 272 134 40 chr13 45046998 45047200 -74697698 - L1MC/D LINE L1 -678 5486 5266 229 373 44 32 chr13 45047507 45047665 -74697233 - L2 LINE L2 -468 2846 2687 1936 255 65 47 chr13 45047665 45048571 -74696327 + L1ME3A LINE L1 5203 6162 -8 195 311 97 80 chr13 45048580 45048879 -74696019 - L2 LINE L2 -613 2701 2398 1483 206 109 38 chr13 45049053 45049530 -74695368 + Charlie1b DNA MER1_type 2 512 -11 451 349 176 14 chr13 45049830 45050494 -74694404 - L2 LINE L2 -1156 2158 1387 24 0 0 0 chr13 45050773 45050797 -74694101 + AT_rich Low_complexity Low_complexity 1 24 0 223 247 71 59 chr13 45050911 45050996 -74693902 + L3 LINE CR1 1373 1458 -119 698 247 60 22 chr13 45051051 45051233 -74693665 - MER58A DNA MER1_type -35 189 1 1057 168 6 11 chr13 45051516 45051695 -74693203 - AluJo SINE Alu -119 193 16 515 212 10 0 chr13 45051695 45051794 -74693104 + AluJb SINE Alu 194 293 -19 23 0 0 0 chr13 45054134 45054157 -74690741 + AT_rich Low_complexity Low_complexity 1 23 0 737 244 140 25 chr13 45054643 45054922 -74689976 - MER46C DNA MER2_type -5 333 23 272 258 89 8 chr13 45054973 45055097 -74689801 + MER20B DNA MER1_type 649 782 -1 605 319 22 86 chr13 45055121 45055434 -74689464 - L3 LINE CR1 -22 1555 1263 339 305 103 35 chr13 45055435 45055609 -74689289 - L3 LINE CR1 -420 1157 972 300 254 0 28 chr13 45055987 45056058 -74688840 - MLT1L LTR MaLR -415 200 132 479 288 89 22 chr13 45056278 45056602 -74688296 - L1MEd LINE L1 -861 2144 1838 535 245 37 43 chr13 45056615 45056838 -74688060 - L1MEd LINE L1 -4893 1741 1519 196 366 37 0 chr13 45056843 45056925 -74687973 - L3 LINE CR1 -683 894 810 248 92 15 46 chr13 45057234 45057299 -74687599 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 1665 156 11 22 chr13 45057300 45057576 -74687322 - AluJo SINE Alu -28 284 12 236 246 51 42 chr13 45058451 45058569 -74686329 + L1 LINE L1 2647 2765 -3381 700 250 143 73 chr13 45058746 45059078 -74685820 + L1MC4a LINE L1 2956 3346 -2800 1903 149 7 3 chr13 45059078 45059380 -74685518 - AluJb SINE Alu -7 305 3 700 250 143 73 chr13 45059380 45059622 -74685276 + L1MC4a LINE L1 3346 3570 -2576 9131 202 40 67 chr13 45059648 45061402 -74683496 + L1MC1 LINE L1 2100 3899 -2714 2755 7 0 0 chr13 45061402 45061705 -74683193 - AluY SINE Alu -8 303 1 9131 202 40 67 chr13 45061705 45064031 -74680867 + L1MC1 LINE L1 3899 6056 -557 846 237 15 5 chr13 45064046 45064244 -74680654 + L1MC1 LINE L1 6413 6612 -1 1609 245 102 54 chr13 45064298 45065033 -74679865 + L1MC4a LINE L1 5260 6029 -1779 359 310 166 20 chr13 45065394 45065791 -74679107 + L1MC5 LINE L1 6411 6797 -1011 2878 211 110 31 chr13 45065792 45066740 -74678158 + L1ME1 LINE L1 5133 6178 0 1286 145 70 4 chr13 45066811 45067039 -74677859 + L1MC3 LINE L1 6520 6762 -1023 670 175 306 30 chr13 45067085 45067353 -74677545 + MLT1G3 LTR MaLR 156 497 -33 220 284 148 87 chr13 45067668 45067897 -74677001 - MIR SINE MIR -14 248 6 764 264 0 0 chr13 45067979 45068146 -74676752 + AluJb SINE Alu 137 303 -9 2048 129 34 0 chr13 45068701 45068996 -74675902 - AluSx SINE Alu -7 305 1 231 135 0 95 chr13 45069032 45069068 -74675830 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 -39 737 149 37 0 chr13 45069068 45069202 -74675696 + L1MB4 LINE L1 6042 6180 0 231 135 0 95 chr13 45069202 45069239 -74675659 + (CAAAAA)n Simple_repeat Simple_repeat 31 70 0 1043 175 53 19 chr13 45069671 45069934 -74674964 - MER33 DNA MER1_type 0 324 53 202 211 0 0 chr13 45069956 45069994 -74674904 + MER5B DNA MER1_type 1 38 -140 2009 119 0 4 chr13 45070728 45071006 -74673892 + AluSg SINE Alu 11 287 -23 1121 206 188 37 chr13 45071573 45071951 -74672947 - MER63B DNA MER1_type -1 435 1 303 261 35 63 chr13 45071967 45072098 -74672800 - MER5A DNA MER1_type -29 149 37 3843 188 62 19 chr13 45072350 45073551 -74671347 + L1MB8 LINE L1 4920 6155 -23 24 32 0 0 chr13 45074825 45074856 -74670042 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 45076148 45076169 -74668729 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 45078099 45078119 -74666779 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr13 45078281 45078305 -74666593 + AT_rich Low_complexity Low_complexity 1 24 0 1002 81 0 0 chr13 45078353 45078477 -74666421 + AluY SINE Alu 1 124 -187 1284 106 0 0 chr13 45078577 45078756 -74666142 + AluY SINE Alu 119 297 -14 2612 32 0 13 chr13 45080369 45080678 -74664220 + AluY SINE Alu 2 306 -5 2334 53 0 72 chr13 45080921 45081241 -74663657 + AluSc SINE Alu 1 297 -12 522 309 98 20 chr13 45085965 45086363 -74658535 - L1ME LINE L1 -373 5748 5320 22 0 0 0 chr13 45086684 45086706 -74658192 + AT_rich Low_complexity Low_complexity 1 22 0 2027 132 0 0 chr13 45086835 45087123 -74657775 - AluSx SINE Alu -24 288 1 353 212 0 0 chr13 45087454 45087520 -74657378 - MER91 DNA MER1_type -74 66 1 33 25 0 0 chr13 45088139 45088179 -74656719 + AT_rich Low_complexity Low_complexity 1 40 0 230 242 105 32 chr13 45090722 45090817 -74654081 + MLT1J LTR MaLR 386 487 -24 328 324 38 0 chr13 45091254 45091359 -74653539 - MIR SINE MIR -6 256 148 704 273 53 24 chr13 45091435 45091644 -74653254 + MIR SINE MIR 39 253 -9 396 0 0 0 chr13 45091650 45091694 -74653204 + (CAT)n Simple_repeat Simple_repeat 2 45 0 1295 171 18 73 chr13 45092170 45092253 -74652645 - MER33 DNA MER1_type -2261 324 238 2010 125 4 0 chr13 45092253 45092532 -74652366 + AluSx SINE Alu 1 280 -32 1295 171 18 73 chr13 45092532 45092788 -74652110 - MER33 DNA MER1_type -2347 238 4 469 282 92 11 chr13 45092839 45093013 -74651885 + MIR3 SINE MIR 16 203 -5 1031 191 52 36 chr13 45093035 45093287 -74651611 + L1MB4 LINE L1 5925 6180 0 1705 175 61 29 chr13 45093441 45093819 -74651079 + MLT1B LTR MaLR 1 390 0 21 36 0 0 chr13 45094098 45094126 -74650772 + AT_rich Low_complexity Low_complexity 1 28 0 270 283 9 88 chr13 45094346 45094459 -74650439 + MIR SINE MIR 35 138 -124 261 295 171 39 chr13 45094730 45094859 -74650039 - L2 LINE L2 0 3313 3168 3380 144 5 7 chr13 45095256 45095824 -74649074 - L1PA16 LINE L1 -26 6140 5574 38 51 0 0 chr13 45095914 45095973 -74648925 + AT_rich Low_complexity Low_complexity 1 59 0 1992 124 17 10 chr13 45096052 45096342 -74648556 + AluSx SINE Alu 1 292 -20 2593 42 0 3 chr13 45097417 45097723 -74647175 + AluY SINE Alu 1 305 -6 180 317 0 0 chr13 45098010 45098051 -74646847 - L2 LINE L2 -18 3254 3214 1411 202 66 63 chr13 45098390 45098635 -74646263 + L1MC5 LINE L1 7353 7596 -365 2224 103 0 7 chr13 45098635 45098937 -74645961 + AluSg SINE Alu 1 300 -10 1411 202 66 63 chr13 45098937 45099250 -74645648 + L1MC5 LINE L1 7596 7913 -48 22 35 0 0 chr13 45099252 45099281 -74645617 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 45099740 45099769 -74645129 + AT_rich Low_complexity Low_complexity 1 29 0 219 120 60 20 chr13 45100253 45100303 -74644595 + (TTTAA)n Simple_repeat Simple_repeat 2 53 0 2410 37 3 0 chr13 45100618 45100912 -74643986 - L1PA7 LINE L1 -3 6151 5857 413 254 34 59 chr13 45101276 45101394 -74643504 + MER91A DNA MER1_type 42 156 -40 3157 143 45 22 chr13 45101395 45101997 -74642901 - L1MB7 LINE L1 -9 6175 5560 1692 183 31 28 chr13 45102091 45102451 -74642447 + MER47A DNA MER2_type 6 366 0 207 0 0 0 chr13 45102619 45102642 -74642256 + (CAA)n Simple_repeat Simple_repeat 2 24 0 206 267 67 67 chr13 45102970 45103075 -74641823 - L2 LINE L2 -8 3305 3201 412 378 142 26 chr13 45103503 45104040 -74640858 - L2 LINE L2 -2503 811 213 263 274 29 49 chr13 45104060 45104162 -74640736 - L2 LINE L2 -10 3262 3163 212 274 164 0 chr13 45104600 45104673 -74640225 + L2 LINE L2 3227 3311 -2 281 289 208 13 chr13 45105768 45105917 -74638981 - MER5A DNA MER1_type -5 184 7 2100 146 0 56 chr13 45106765 45107122 -74637776 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr13 45107879 45107900 -74636998 + AT_rich Low_complexity Low_complexity 1 21 0 5224 141 69 23 chr13 45108205 45110231 -74634667 + L1MA4 LINE L1 4125 6255 -45 270 125 0 0 chr13 45110247 45110295 -74634603 + L1MA4 LINE L1 6242 6289 -11 27 0 0 0 chr13 45110327 45110354 -74634544 + AT_rich Low_complexity Low_complexity 1 27 0 710 149 117 0 chr13 45110544 45110698 -74634200 + MLT1B LTR MaLR 39 210 -180 312 120 0 0 chr13 45111601 45111651 -74633247 + (A)n Simple_repeat Simple_repeat 1 50 0 1615 165 16 85 chr13 45112558 45112761 -74632137 + MLT1B LTR MaLR 29 194 -196 2215 138 0 3 chr13 45112761 45113073 -74631825 + AluSx SINE Alu 1 311 -1 1615 165 16 85 chr13 45113073 45113256 -74631642 + MLT1B LTR MaLR 194 388 -2 25 51 0 0 chr13 45113337 45113376 -74631522 + AT_rich Low_complexity Low_complexity 1 39 0 192 125 0 0 chr13 45115022 45115054 -74629844 + (T)n Simple_repeat Simple_repeat 1 32 0 323 299 96 53 chr13 45115304 45115491 -74629407 + MIR SINE MIR 46 240 -22 401 247 171 0 chr13 45115722 45115868 -74629030 - MIR SINE MIR -89 173 3 265 350 50 0 chr13 45116011 45116131 -74628767 - MIR3 SINE MIR -5 203 78 2276 54 7 0 chr13 45116899 45117216 -74627682 - AluY SINE Alu 0 325 7 283 328 152 11 chr13 45117223 45117402 -74627496 - MIR SINE MIR -46 216 19 407 313 92 6 chr13 45117426 45117818 -74627080 + LTR16B LTR ERVL 1 462 -2 7210 165 147 12 chr13 45117850 45119397 -74625501 - MER52A LTR ERV1 0 1755 1 24 0 0 0 chr13 45119531 45119555 -74625343 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr13 45120165 45120190 -74624708 + AT_rich Low_complexity Low_complexity 1 25 0 286 260 39 31 chr13 45120446 45120573 -74624325 - L1ME3A LINE L1 -219 5951 5824 614 282 14 20 chr13 45120590 45121059 -74623839 - L1ME3A LINE L1 -522 5642 5175 235 242 70 47 chr13 45121349 45121477 -74623421 + MLT1J2 LTR MaLR 22 152 -298 1822 152 63 14 chr13 45121646 45121994 -74622904 + MLT1A1 LTR MaLR 1 365 0 478 295 39 60 chr13 45122086 45122432 -74622466 - L1ME3A LINE L1 -1314 4832 4480 2280 106 0 3 chr13 45122432 45122734 -74622164 - AluSg SINE Alu -9 301 1 478 295 39 60 chr13 45122734 45122797 -74622101 - L1ME3A LINE L1 -1666 4480 4417 2332 77 0 7 chr13 45122797 45123096 -74621802 - AluSg SINE Alu -13 297 1 478 295 39 60 chr13 45123096 45123231 -74621667 - L1ME3A LINE L1 -1729 4417 4299 362 21 0 0 chr13 45123320 45123367 -74621531 + MADE1 DNA Mariner 1 47 -33 623 268 98 18 chr13 45123388 45123724 -74621174 - L1ME3A LINE L1 -1948 4198 3836 23 0 0 0 chr13 45124051 45124074 -74620824 + AT_rich Low_complexity Low_complexity 1 23 0 318 187 0 13 chr13 45124250 45124325 -74620573 + L1MEc LINE L1 78 151 -6245 1216 175 34 8 chr13 45124327 45124595 -74620303 + L1MD3 LINE L1 7721 7995 0 2383 81 0 10 chr13 45124957 45125281 -74619617 - AluSx SINE Alu 0 312 5 276 291 34 11 chr13 45125449 45125617 -74619281 + L1P3 LINE L1 5657 5828 -344 999 287 62 19 chr13 45126134 45126458 -74618440 - HERV16 LTR ERVL -3675 1321 984 663 163 16 8 chr13 45126453 45126582 -74618316 - HERV16 LTR ERVL -4135 861 732 * 1378 286 28 24 chr13 45126579 45127651 -74617247 + HERV16 LTR ERVL 1334 2530 -2466 1251 302 14 21 chr13 45127757 45127949 -74616949 + LTR16B LTR ERVL 31 223 -241 2318 115 3 0 chr13 45127949 45128253 -74616645 - AluSq SINE Alu -8 305 1 1251 302 14 21 chr13 45128253 45128497 -74616401 + LTR16B LTR ERVL 223 464 0 2367 90 0 3 chr13 45128568 45128868 -74616030 + AluSx SINE Alu 1 299 -13 1368 327 17 12 chr13 45128904 45129676 -74615222 + HERV16 LTR ERVL 3726 4542 -943 483 331 29 69 chr13 45129957 45130434 -74614464 + HERV16 LTR ERVL 4926 5383 -381 1278 251 25 48 chr13 45130578 45131017 -74613881 + LTR16A LTR ERVL 21 449 -1 217 289 169 0 chr13 45131556 45131639 -74613259 + L3 LINE CR1 1376 1472 -105 292 167 69 28 chr13 45131730 45131802 -74613096 - MIR SINE MIR -39 223 149 2063 154 0 0 chr13 45131815 45132127 -74612771 + AluSx SINE Alu 1 312 0 722 256 124 28 chr13 45133090 45133447 -74611451 + MER57A LTR ERV1 27 403 0 314 328 30 60 chr13 45133779 45133913 -74610985 - MIR3 SINE MIR -64 144 15 585 282 60 9 chr13 45135529 45135745 -74609153 + MIR SINE MIR 21 247 -15 205 298 0 0 chr13 45135861 45135908 -74608990 - MIR3 SINE MIR -1 207 161 482 333 39 35 chr13 45137401 45137656 -74607242 + L3 LINE CR1 530 785 -792 2151 130 0 9 chr13 45137979 45138294 -74606604 - AluSx SINE Alu 0 312 1 936 197 111 57 chr13 45138384 45138755 -74606143 + L1MC4a LINE L1 5912 6302 -1506 341 308 94 39 chr13 45138966 45139555 -74605343 - L1MEd LINE L1 -790 2512 1786 297 71 0 0 chr13 45140186 45140228 -74604670 - L1ME2 LINE L1 -23 6141 6100 252 0 0 0 chr13 45140230 45140258 -74604640 + (TA)n Simple_repeat Simple_repeat 1 28 0 500 206 23 8 chr13 45140258 45140389 -74604509 - L1M4 LINE L1 -797 5349 5217 * 1703 219 63 6 chr13 45140379 45140886 -74604012 - L1M4 LINE L1 -782 5364 4829 546 262 31 4 chr13 45140940 45141165 -74603733 - L1MEd LINE L1 -5219 1722 1492 667 288 81 60 chr13 45141190 45141721 -74603177 - L1MEd LINE L1 -5018 1405 864 1294 183 168 89 chr13 45141844 45142326 -74602572 + MLT2B1 LTR ERVL 1 520 0 385 295 51 6 chr13 45142409 45142565 -74602333 - L1MEd LINE L1 -6242 181 19 2062 109 44 0 chr13 45142586 45142879 -74602019 - AluSp SINE Alu -7 306 1 61 45 0 0 chr13 45143361 45143450 -74601448 + AT_rich Low_complexity Low_complexity 1 89 0 2237 132 96 69 chr13 45143995 45144277 -74600621 + L1MC2 LINE L1 5812 6116 -228 785 181 0 0 chr13 45144277 45144410 -74600488 + FLAM_A SINE Alu 1 133 0 2237 132 96 69 chr13 45144410 45144636 -74600262 + L1MC2 LINE L1 6116 6334 -10 189 107 0 0 chr13 45144807 45144835 -74600063 + (A)n Simple_repeat Simple_repeat 1 28 0 380 290 117 9 chr13 45145592 45145823 -74599075 - LTR33 LTR ERVL -28 493 238 458 185 0 0 chr13 45145827 45145908 -74598990 - AluJo SINE Alu -16 296 216 946 182 19 0 chr13 45145909 45146063 -74598835 - AluJo SINE Alu -155 157 1 243 357 35 39 chr13 45146378 45146633 -74598265 - L2 LINE L2 -705 2609 2356 454 228 44 37 chr13 45146988 45147124 -74597774 - MLT1F LTR MaLR -34 508 372 442 250 96 45 chr13 45147192 45147348 -74597550 - MLT1F LTR MaLR -302 288 125 4992 249 42 35 chr13 45147354 45147651 -74597247 + L1ME1 LINE L1 2590 2883 -3283 932 190 23 0 chr13 45147651 45147872 -74597026 - L1MA5A LINE L1 -4 6293 6068 4992 249 42 35 chr13 45147872 45148569 -74596329 + L1ME1 LINE L1 2883 3574 -2592 2216 105 0 0 chr13 45148569 45148855 -74596043 + AluSx SINE Alu 1 286 -26 884 36 9 0 chr13 45148860 45148972 -74595926 + (GGAA)n Simple_repeat Simple_repeat 4 116 0 4992 249 42 35 chr13 45148972 45149991 -74594907 + L1ME1 LINE L1 3577 4587 -1579 1630 223 19 58 chr13 45149991 45150475 -74594423 + LTR40c LTR ERVL 1 465 0 4992 249 42 35 chr13 45150475 45151941 -74592957 + L1ME1 LINE L1 4587 6144 -22 270 206 0 0 chr13 45151962 45152030 -74592868 + GA-rich Low_complexity Low_complexity 3 70 0 296 199 385 0 chr13 45152110 45152276 -74592622 + MIR SINE MIR 20 249 -13 806 251 6 0 chr13 45153294 45153465 -74591433 + MER5B DNA MER1_type 7 178 0 390 342 39 7 chr13 45153473 45153628 -74591270 + MER5A DNA MER1_type 1 160 -29 261 354 31 0 chr13 45153697 45153793 -74591105 + L2 LINE L2 2890 2988 -284 190 211 79 0 chr13 45153917 45153955 -74590943 + L3 LINE CR1 1429 1469 -108 446 232 312 0 chr13 45154397 45154535 -74590363 - MER5A DNA MER1_type 0 189 9 432 0 0 0 chr13 45155401 45155449 -74589449 + (TG)n Simple_repeat Simple_repeat 1 48 0 268 341 82 22 chr13 45155495 45155677 -74589221 - L3b LINE CR1 -37 1546 1354 474 340 8 16 chr13 45156132 45156382 -74588516 + L1MC4a LINE L1 5685 5932 -1876 4105 143 16 14 chr13 45156920 45157626 -74587272 + MER39 LTR ERV1 1 707 0 333 291 160 19 chr13 45157730 45157936 -74586962 + L2 LINE L2 3079 3313 0 876 111 0 8 chr13 45160076 45160202 -74584696 - FLAM_C SINE Alu -7 136 12 2360 68 0 7 chr13 45160389 45160684 -74584214 + AluSc SINE Alu 1 293 -16 284 289 93 10 chr13 45161309 45161406 -74583492 + MIR SINE MIR 6 110 -152 392 306 31 65 chr13 45161417 45161688 -74583210 + L2 LINE L2 2901 3159 -113 1581 190 146 19 chr13 45161811 45162222 -74582676 + MLT1C LTR MaLR 1 463 -4 731 246 126 0 chr13 45162268 45162451 -74582447 - MER58A DNA MER1_type -12 212 7 4663 140 1 0 chr13 45163317 45164075 -74580823 + L1PA16 LINE L1 5383 6141 -25 250 320 140 0 chr13 45164506 45164606 -74580292 + MIR SINE MIR 71 184 -78 324 109 0 0 chr13 45165366 45165414 -74579484 + L1PA16 LINE L1 5924 5974 -191 1832 145 7 14 chr13 45165414 45165704 -74579194 + AluJo SINE Alu 1 288 -24 235 134 30 45 chr13 45165712 45165779 -74579119 + A-rich Low_complexity Low_complexity 2 67 0 1144 158 0 0 chr13 45165780 45165970 -74578928 + L1PA16 LINE L1 5968 6157 -9 1903 142 0 17 chr13 45166913 45167209 -74577689 + AluJb SINE Alu 20 310 -2 760 146 82 58 chr13 45167820 45167991 -74576907 - FAM SINE Alu 0 175 1 351 0 0 0 chr13 45168147 45168186 -74576712 + (CA)n Simple_repeat Simple_repeat 2 40 0 193 263 125 75 chr13 45168201 45168361 -74576537 + L2 LINE L2 2872 3039 -233 2262 88 3 10 chr13 45169328 45169622 -74575276 + AluSp SINE Alu 1 292 -21 2256 107 3 0 chr13 45170716 45171015 -74573883 - AluSx SINE Alu -9 303 4 4033 257 109 28 chr13 45171943 45173198 -74571700 + L1MEc LINE L1 37 1466 -4930 2331 112 0 0 chr13 45173198 45173503 -74571395 + AluSg SINE Alu 1 305 -5 4033 257 109 28 chr13 45173503 45173945 -74570953 + L1MEc LINE L1 1466 1871 -4525 616 230 7 66 chr13 45173942 45174216 -74570682 + L1MEc LINE L1 2327 2584 -3631 * 202 146 0 24 chr13 45174555 45174596 -74570302 + (TAAAAA)n Simple_repeat Simple_repeat 4 43 0 403 281 92 7 chr13 45175508 45175661 -74569237 - MIR SINE MIR -4 258 93 569 71 12 0 chr13 45175729 45175813 -74569085 + L1PA15 LINE L1 6059 6143 -22 2393 80 0 16 chr13 45175860 45176173 -74568725 + AluY SINE Alu 4 311 0 187 350 36 21 chr13 45177542 45177682 -74567216 - L2 LINE L2 -774 2540 2399 2898 3 0 0 chr13 45177700 45178011 -74566887 + AluYa5 SINE Alu 1 311 0 245 340 135 7 chr13 45178066 45178207 -74566691 - L2 LINE L2 -938 2376 2218 26 0 0 0 chr13 45179554 45179580 -74565318 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr13 45179708 45179747 -74565151 + AT_rich Low_complexity Low_complexity 1 39 0 181 300 0 0 chr13 45182409 45182459 -74562439 - L3b LINE CR1 -314 1269 1220 * 582 237 46 26 chr13 45182457 45182609 -74562289 + MIR SINE MIR 108 262 0 21 0 0 0 chr13 45183297 45183318 -74561580 + AT_rich Low_complexity Low_complexity 1 21 0 231 340 104 0 chr13 45183352 45183458 -74561440 - MIR SINE MIR -110 152 36 357 188 8 117 chr13 45184108 45184236 -74560662 - L1MA9 LINE L1 -40 6272 6159 228 143 0 0 chr13 45184236 45184278 -74560620 + (TTTC)n Simple_repeat Simple_repeat 1 42 0 635 221 39 0 chr13 45184278 45184432 -74560466 - L1MA9 LINE L1 -148 6164 6005 2333 112 0 0 chr13 45185496 45185800 -74559098 + AluSq SINE Alu 6 309 -4 2463 71 3 0 chr13 45188884 45189192 -74555706 - AluY SINE Alu -2 309 1 222 204 31 0 chr13 45189255 45189353 -74555545 + (TA)n Simple_repeat Simple_repeat 2 102 0 309 236 0 38 chr13 45189653 45189759 -74555139 - MER103 DNA DNA -9 157 56 2034 98 74 0 chr13 45189814 45190099 -74554799 - AluSx SINE Alu -6 306 1 1089 262 139 36 chr13 45191939 45192465 -74552433 + MLT1G1 LTR MaLR 16 595 0 38 61 0 0 chr13 45193393 45193459 -74551439 + AT_rich Low_complexity Low_complexity 1 66 0 296 189 14 0 chr13 45193617 45193691 -74551207 + CT-rich Low_complexity Low_complexity 3 77 0 269 369 28 14 chr13 45194114 45194255 -74550643 - MIR3 SINE MIR -63 145 3 201 74 0 0 chr13 45194312 45194339 -74550559 + (CCCCCT)n Simple_repeat Simple_repeat 5 31 0 10677 61 10 11 chr13 45194339 45195725 -74549173 + SVA Other Other 3 1386 0 305 196 0 0 chr13 45196060 45196116 -74548782 - L2 LINE L2 0 3313 3258 337 305 21 43 chr13 45196832 45196973 -74547925 - MIR3 SINE MIR -24 184 47 2064 148 0 3 chr13 45197163 45197468 -74547430 + AluSx SINE Alu 1 304 -8 28 0 0 0 chr13 45198000 45198028 -74546870 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 45200082 45200104 -74544794 + AT_rich Low_complexity Low_complexity 1 22 0 292 273 30 0 chr13 45200232 45200298 -74544600 + MIR SINE MIR 81 148 -60 290 294 297 21 chr13 45200710 45201043 -74543855 - L3b LINE CR1 -50 1533 1109 539 258 45 17 chr13 45201060 45201238 -74543660 - MIR3 SINE MIR -5 203 21 1890 143 40 13 chr13 45201516 45201817 -74543081 - 7SLRNA srpRNA srpRNA -7 313 5 206 206 95 48 chr13 45202076 45202139 -74542759 + L2 LINE L2 3189 3254 -18 476 324 166 8 chr13 45202795 45203036 -74541862 - L2 LINE L2 0 3272 2994 545 184 203 18 chr13 45203169 45203332 -74541566 - MIR SINE MIR 0 262 70 606 316 58 82 chr13 45203653 45203853 -74541045 - L2 LINE L2 -2 3270 3080 1026 161 18 161 chr13 45203853 45204132 -74540766 - MER8 DNA MER2_type 0 239 1 606 316 58 82 chr13 45204132 45204273 -74540625 - L2 LINE L2 -192 3080 2937 2227 127 0 9 chr13 45204274 45204589 -74540309 + AluSx SINE Alu 1 312 0 248 264 28 0 chr13 45204916 45204988 -74539910 - MIR SINE MIR -65 143 70 423 311 11 62 chr13 45205297 45205474 -74539424 + MIR SINE MIR 59 226 -36 242 206 16 0 chr13 45205479 45205542 -74539356 + GA-rich Low_complexity Low_complexity 2 65 0 2074 106 47 13 chr13 45206634 45206935 -74537963 + AluSq SINE Alu 1 311 -2 630 294 23 15 chr13 45207081 45207302 -74537596 + MIR SINE MIR 25 249 -13 254 272 74 0 chr13 45207377 45207515 -74537383 - MIR SINE MIR -62 146 34 1956 112 48 10 chr13 45208107 45208420 -74536478 + L1MA5A LINE L1 5973 6297 0 414 120 0 0 chr13 45208901 45208976 -74535922 + (TG)n Simple_repeat Simple_repeat 1 75 0 186 103 0 0 chr13 45208976 45209005 -74535893 + (GA)n Simple_repeat Simple_repeat 2 30 0 2148 58 4 0 chr13 45209432 45209693 -74535205 + AluY SINE Alu 1 262 -49 672 75 0 0 chr13 45209694 45209797 -74535101 + AluSg/x SINE Alu 204 306 0 204 97 0 0 chr13 45209911 45209942 -74534956 + (CTG)n Simple_repeat Simple_repeat 3 33 0 260 53 26 0 chr13 45209942 45209980 -74534918 + (ATG)n Simple_repeat Simple_repeat 3 41 0 244 305 74 0 chr13 45210223 45210318 -74534580 + MIR SINE MIR 159 260 -2 22 56 0 0 chr13 45211995 45212031 -74532867 + AT_rich Low_complexity Low_complexity 1 36 0 239 140 20 0 chr13 45212043 45212093 -74532805 + CT-rich Low_complexity Low_complexity 2 52 0 211 264 107 39 chr13 45212210 45212392 -74532506 + MIR SINE MIR 34 262 0 277 109 0 0 chr13 45214441 45214487 -74530411 - Alu SINE Alu 0 302 257 226 241 133 0 chr13 45216109 45216192 -74528706 - L2 LINE L2 -62 3251 3158 667 236 67 20 chr13 45216509 45216704 -74528194 - MER97a DNA MER1_type? -677 217 14 192 289 53 40 chr13 45217503 45217579 -74527319 - L2 LINE L2 -60 3212 3136 1040 218 13 18 chr13 45217694 45217923 -74526975 + MIR SINE MIR 8 235 -27 361 250 0 19 chr13 45217938 45218042 -74526856 - MIR SINE MIR -14 248 147 2801 148 27 32 chr13 45218056 45218421 -74526477 - L1MB7 LINE L1 0 6184 5821 1896 164 0 16 chr13 45218421 45218732 -74526166 - AluJo SINE Alu -6 306 1 2801 148 27 32 chr13 45218732 45218893 -74526005 - L1MB7 LINE L1 -363 5821 5661 1437 229 144 58 chr13 45218893 45219706 -74525192 - HAL1 LINE L1 0 2507 1625 1482 286 34 18 chr13 45219708 45220219 -74524679 - HAL1 LINE L1 -918 1589 1067 1341 180 138 48 chr13 45220219 45220552 -74524346 - MLT1A1 LTR MaLR -2 363 1 1482 286 34 18 chr13 45220552 45220592 -74524306 - HAL1 LINE L1 -1440 1067 1029 537 290 16 52 chr13 45220608 45220856 -74524042 - HAL1 LINE L1 -2111 396 158 252 310 218 21 chr13 45220862 45221004 -74523894 + L2 LINE L2 3103 3272 0 225 132 0 0 chr13 45221283 45221321 -74523577 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1698 194 86 56 chr13 45221322 45221785 -74523113 - MLT2B1 LTR ERVL -42 478 2 1953 196 96 10 chr13 45221818 45222236 -74522662 - MLT1C LTR MaLR -2 465 12 309 343 107 38 chr13 45222241 45222606 -74522292 - L2 LINE L2 -571 2743 2354 817 185 23 0 chr13 45223423 45223553 -74521345 - MER45A DNA AcHobo 0 178 46 1239 111 30 30 chr13 45223945 45224143 -74520755 + L1MA7 LINE L1 5430 5627 -685 877 193 20 0 chr13 45224145 45224295 -74520603 + MER45A DNA AcHobo 26 178 0 3462 170 47 2 chr13 45224411 45225034 -74519864 + L1MA7 LINE L1 5641 6291 0 237 269 58 87 chr13 45225043 45225147 -74519751 - L2 LINE L2 -252 3020 2920 217 236 236 0 chr13 45225162 45225234 -74519664 + L2 LINE L2 3149 3237 -35 2239 82 0 0 chr13 45225356 45225669 -74519229 + AluY SINE Alu 1 313 0 2150 142 0 0 chr13 45226396 45226707 -74518191 + AluSx SINE Alu 1 311 -1 194 280 70 40 chr13 45227065 45227165 -74517733 - MIR SINE MIR -48 214 112 2353 151 38 21 chr13 45227694 45228112 -74516786 + MSTB1 LTR MaLR 8 432 0 227 371 109 0 chr13 45228255 45228430 -74516468 - L2 LINE L2 -1031 2283 2090 225 368 0 0 chr13 45228795 45228871 -74516027 - L2 LINE L2 -47 3225 3150 405 214 292 68 chr13 45229560 45229752 -74515146 - MER102b DNA MER1_type -14 327 93 198 103 0 0 chr13 45230315 45230344 -74514554 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 4388 250 92 60 chr13 45230344 45231420 -74513478 - L2 LINE L2 -13 3300 2259 2218 131 0 0 chr13 45231420 45231725 -74513173 + AluSx SINE Alu 1 305 -7 4388 250 92 60 chr13 45231725 45231765 -74513133 - L2 LINE L2 -1054 2259 2222 1096 150 0 6 chr13 45231765 45231932 -74512966 + L1PB3 LINE L1 5989 6154 0 4388 250 92 60 chr13 45231932 45232823 -74512075 - L2 LINE L2 -1091 2222 1245 2057 190 39 28 chr13 45232863 45233397 -74511501 - L1MC4a LINE L1 0 7808 7215 2494 63 13 0 chr13 45233404 45233704 -74511194 + AluSx SINE Alu 1 304 -8 422 280 98 0 chr13 45233708 45233840 -74511058 - L2 LINE L2 -2083 1231 1087 570 319 86 9 chr13 45234545 45234777 -74510121 + MIR SINE MIR 6 255 -7 233 278 0 0 chr13 45234818 45234872 -74510026 + MIR3 SINE MIR 106 159 -49 203 267 0 0 chr13 45235355 45235400 -74509498 + L2 LINE L2 2713 2757 -557 410 304 122 45 chr13 45235503 45235905 -74508993 - L1MEd LINE L1 -3380 2749 2317 364 319 131 51 chr13 45235924 45236259 -74508639 - L1MEd LINE L1 -5707 412 51 234 150 0 0 chr13 45236374 45236414 -74508484 + (TA)n Simple_repeat Simple_repeat 1 40 0 750 293 45 12 chr13 45236543 45236785 -74508113 - MIR SINE MIR 0 262 13 1915 146 6 22 chr13 45236885 45237201 -74507697 + AluJo SINE Alu 1 311 -1 293 262 131 16 chr13 45237231 45237353 -74507545 + L1ME LINE L1 5318 5453 -668 * 972 164 97 10 chr13 45237350 45237537 -74507361 + L1 LINE L1 5164 5372 -774 1656 161 14 11 chr13 45237537 45237823 -74507075 + AluJo SINE Alu 1 287 -25 972 164 97 10 chr13 45237823 45237842 -74507056 + L1 LINE L1 5372 5388 -758 699 210 93 14 chr13 45240428 45240642 -74504256 - MIR SINE MIR -9 253 23 22 35 0 0 chr13 45240960 45240989 -74503909 + AT_rich Low_complexity Low_complexity 1 29 0 228 311 0 0 chr13 45241113 45241174 -74503724 + L2 LINE L2 3210 3270 -2 247 159 32 32 chr13 45243922 45243985 -74500913 + (CCCCG)n Simple_repeat Simple_repeat 2 64 0 2883 228 41 2 chr13 45245358 45245971 -74498927 - MER82 DNA MER2_type -13 640 4 339 263 139 52 chr13 45246377 45246571 -74498327 - HAL1b LINE L1 -504 844 634 312 191 0 16 chr13 45246572 45246635 -74498263 - MER20 DNA MER1_type 0 219 158 31902 95 9 25 chr13 45246701 45253002 -74491896 - L1PA8A LINE L1 -1 6445 144 392 290 136 19 chr13 45253083 45253238 -74491660 + L2 LINE L2 3096 3268 -4 1492 160 12 78 chr13 45254056 45254596 -74490302 - L1M1 LINE L1 -743 6105 5637 6035 24 0 0 chr13 45254596 45255294 -74489604 + L1PA3 LINE L1 5455 6152 -3 1492 160 12 78 chr13 45255294 45255421 -74489477 - L1M1 LINE L1 -1211 5637 5503 * 7233 175 24 46 chr13 45255414 45255646 -74489252 - L1M1 LINE L1 -4246 2603 2367 2277 106 0 6 chr13 45255646 45255958 -74488940 + AluSg SINE Alu 1 310 0 7233 175 24 46 chr13 45255958 45257265 -74487633 - L1M1 LINE L1 -4482 2367 1098 190 276 76 67 chr13 45257551 45257656 -74487242 - L2 LINE L2 -1490 1824 1719 1740 181 10 3 chr13 45258047 45258356 -74486542 - AluJo SINE Alu -1 311 1 21 36 0 0 chr13 45259544 45259572 -74485326 + AT_rich Low_complexity Low_complexity 1 28 0 259 269 97 82 chr13 45261359 45261690 -74483208 + L1ME LINE L1 31 366 -5704 565 182 36 0 chr13 45261713 45261823 -74483075 + FLAM_A SINE Alu 1 114 -19 2082 160 71 22 chr13 45261823 45262228 -74482670 - MSTB LTR MaLR 0 426 1 682 169 63 7 chr13 45262229 45262371 -74482527 - MSTB-int LTR MaLR -1 1650 1501 1194 238 33 40 chr13 45262371 45262674 -74482224 - MLT2B3 LTR ERVL 0 554 254 3724 168 21 1 chr13 45262677 45263337 -74481561 - MSTB-int LTR MaLR -977 674 2 1757 213 33 24 chr13 45263338 45263577 -74481321 - MSTB LTR MaLR 0 426 191 2092 136 13 0 chr13 45263577 45263878 -74481020 - AluSx SINE Alu -7 305 1 2522 57 0 0 chr13 45263888 45264187 -74480711 - AluY SINE Alu -12 299 1 1757 213 33 24 chr13 45264187 45264358 -74480540 - MSTB LTR MaLR -243 183 1 186 103 0 0 chr13 45264709 45264738 -74480160 + (GA)n Simple_repeat Simple_repeat 1 29 0 232 206 88 69 chr13 45264778 45264938 -74479960 + L1ME LINE L1 445 607 -4955 24 0 0 0 chr13 45265612 45265636 -74479262 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr13 45266238 45266258 -74478640 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 569 295 167 9 chr13 45266775 45266985 -74477913 - MIR SINE MIR 0 262 20 253 138 0 108 chr13 45266995 45267060 -74477838 - L1MC4 LINE L1 -1 8041 7924 1100 252 33 34 chr13 45267066 45267448 -74477450 + L1M4c LINE L1 601 954 -5588 505 155 3 8 chr13 45267467 45267566 -74477332 + L1M1 LINE L1 1045 1207 -5175 * 3705 222 35 49 chr13 45267558 45267743 -74477155 + L1M4c LINE L1 951 1137 -5509 437 252 0 0 chr13 45267743 45267846 -74477052 - U13 snRNA snRNA -1 103 1 3705 222 35 49 chr13 45267846 45269216 -74475682 + L1M4c LINE L1 1137 2574 -4072 1509 201 21 12 chr13 45269230 45269564 -74475334 + L1MC2 LINE L1 5928 6264 -80 1476 246 18 6 chr13 45269567 45270059 -74474839 + L1M4c LINE L1 3534 4031 -2613 14742 181 11 2 chr13 45270071 45270486 -74474412 + L1PA13 LINE L1 2332 2742 -3421 2362 116 37 6 chr13 45270486 45270839 -74474059 - THE1B LTR MaLR 0 364 1 14742 181 11 2 chr13 45270839 45271750 -74473148 + L1PA13 LINE L1 2742 3643 -2520 210 71 0 0 chr13 45271750 45271778 -74473120 + (CAA)n Simple_repeat Simple_repeat 3 30 0 14742 181 11 2 chr13 45271778 45272193 -74472705 + L1PA13 LINE L1 3643 4053 -2110 2500 62 7 3 chr13 45272193 45272499 -74472399 - AluY SINE Alu -4 307 1 14742 181 11 2 chr13 45272499 45274558 -74470340 + L1PA13 LINE L1 4053 6162 -1 2828 250 77 11 chr13 45274562 45275745 -74469153 + L1M4 LINE L1 1374 2640 -3742 676 95 0 0 chr13 45275754 45275849 -74469049 - AluS SINE Alu -218 95 1 1787 244 43 82 chr13 45275963 45276560 -74468338 + L1MEc LINE L1 1618 2237 -3978 1449 210 14 14 chr13 45276560 45276850 -74468048 + AluJo SINE Alu 1 290 -22 1787 244 43 82 chr13 45276850 45277771 -74467127 + L1MEc LINE L1 2237 3022 -3193 22 56 0 0 chr13 45277871 45277907 -74466991 + AT_rich Low_complexity Low_complexity 1 36 0 2413 110 100 3 chr13 45277996 45278386 -74466512 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr13 45278741 45278763 -74466135 + AT_rich Low_complexity Low_complexity 1 22 0 3986 223 42 44 chr13 45279998 45281629 -74463269 + L1MEc LINE L1 1881 3488 -2727 420 212 10 0 chr13 45281660 45281759 -74463139 + L1M4 LINE L1 4873 4972 -1410 517 337 6 12 chr13 45282876 45283042 -74461856 + MIR3 SINE MIR 20 184 -24 24 53 0 0 chr13 45283364 45283402 -74461496 + AT_rich Low_complexity Low_complexity 1 38 0 1020 222 14 9 chr13 45283548 45283764 -74461134 - L1MC3 LINE L1 -977 6808 6592 195 100 0 0 chr13 45283806 45283836 -74461062 + (TA)n Simple_repeat Simple_repeat 1 30 0 716 335 84 16 chr13 45284920 45285287 -74459611 - L2 LINE L2 -461 2853 2462 449 342 149 32 chr13 45285337 45285871 -74459027 - L2 LINE L2 0 3313 2720 636 304 190 21 chr13 45286061 45286534 -74458364 - L2 LINE L2 -1235 2079 1527 220 217 0 0 chr13 45286619 45286665 -74458233 - L2 LINE L2 0 3313 3268 392 213 37 37 chr13 45286943 45287051 -74457847 + L1ME LINE L1 5672 5779 -385 2364 170 8 31 chr13 45287053 45287535 -74457363 + L1MB4 LINE L1 5710 6180 0 962 171 136 11 chr13 45287542 45287718 -74457180 + AluJb SINE Alu 87 284 -28 189 0 0 0 chr13 45287718 45287739 -74457159 + (TA)n Simple_repeat Simple_repeat 1 21 0 1054 229 84 46 chr13 45287786 45288131 -74456767 - L1ME2 LINE L1 -1 6163 5806 712 305 5 10 chr13 45288148 45288345 -74456553 + MLT1E2-int LTR MaLR 692 887 -484 1524 229 17 67 chr13 45288531 45288937 -74455961 + MLT1E2-int LTR MaLR 971 1356 -15 1971 213 107 38 chr13 45288943 45289525 -74455373 + MLT1E2 LTR MaLR 1 622 -4 537 273 98 19 chr13 45289525 45289730 -74455168 - L2 LINE L2 -78 3235 3015 195 244 137 61 chr13 45290107 45290197 -74454701 + MIR3 SINE MIR 5 109 -99 2325 93 0 7 chr13 45290197 45290499 -74454399 - AluSg SINE Alu -10 300 1 195 244 137 61 chr13 45290499 45290539 -74454359 + MIR3 SINE MIR 109 145 -63 777 133 0 0 chr13 45290668 45290788 -74454110 + AluSc SINE Alu 190 309 0 2015 77 0 11 chr13 45290829 45291101 -74453797 - AluY SINE Alu -2 309 41 21 0 0 0 chr13 45291453 45291474 -74453424 + AT_rich Low_complexity Low_complexity 1 21 0 229 356 130 9 chr13 45291905 45292020 -74452878 - L2 LINE L2 -7 3265 3137 180 97 0 0 chr13 45292164 45292195 -74452703 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2362 70 3 10 chr13 45293769 45294071 -74450827 + AluSg SINE Alu 1 300 -10 521 341 118 24 chr13 45295678 45296120 -74448778 - L2 LINE L2 -5 3267 2781 1676 180 151 29 chr13 45296461 45296877 -74448021 + MLT1C LTR MaLR 1 467 0 505 307 103 65 chr13 45297624 45298237 -74446661 - L1M4 LINE L1 -1351 4795 4160 1638 141 8 12 chr13 45298416 45298671 -74446227 - AluJo SINE Alu -10 302 49 533 320 98 46 chr13 45299172 45299664 -74445234 - HAL1b LINE L1 -803 1704 1239 189 94 0 0 chr13 45299664 45299696 -74445202 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 533 320 98 46 chr13 45299696 45299737 -74445161 - HAL1b LINE L1 -1268 1239 42 2113 118 0 10 chr13 45300118 45300415 -74444483 + AluSx SINE Alu 1 294 -18 1968 141 53 6 chr13 45300610 45300951 -74443947 - MLT1A1 LTR MaLR -8 357 1 301 291 30 22 chr13 45302818 45302952 -74441946 + L1M4 LINE L1 3396 3530 -2616 342 338 110 18 chr13 45303163 45303382 -74441516 + L1MC4a LINE L1 974 1212 -5318 351 251 242 43 chr13 45303397 45303724 -74441174 + L1MC4a LINE L1 1277 1668 -4862 360 258 108 52 chr13 45303862 45304056 -74440842 + L1MC4a LINE L1 1893 2097 -4443 1222 292 32 40 chr13 45304187 45305008 -74439890 + L1MC4a LINE L1 4809 5622 -918 321 90 8 90 chr13 45305031 45305164 -74439734 + (TA)n Simple_repeat Simple_repeat 2 123 0 848 159 15 0 chr13 45305164 45305296 -74439602 - Tigger7 DNA MER2_type -1 2486 2353 300 291 14 35 chr13 45306131 45306250 -74438648 - L1ME4a LINE L1 -3 6118 6001 855 237 101 9 chr13 45306250 45306469 -74438429 - MER8 DNA MER2_type 0 239 1 300 291 14 35 chr13 45306469 45306490 -74438408 - L1ME4a LINE L1 -120 6001 5981 1249 164 187 0 chr13 45307135 45307166 -74437732 - Tigger7 DNA MER2_type -127 2360 2336 229 19 19 74 chr13 45307166 45307220 -74437678 + (TAA)n Simple_repeat Simple_repeat 1 51 0 1249 164 187 0 chr13 45307220 45307523 -74437375 - Tigger7 DNA MER2_type -151 2336 1 496 299 146 26 chr13 45307533 45308076 -74436822 + L1MC4a LINE L1 5677 5831 -714 220 328 32 24 chr13 45308377 45308502 -74436396 - L2 LINE L2 -213 3059 2934 2230 104 3 0 chr13 45308567 45308865 -74436033 + AluY SINE Alu 3 301 -10 2200 117 3 0 chr13 45308875 45309174 -74435724 + AluSx SINE Alu 1 300 -12 5352 143 65 5 chr13 45309962 45311171 -74433727 - L1MA5 LINE L1 0 6300 5024 300 296 10 9 chr13 45311199 45311370 -74433528 - L1MC/D LINE L1 -701 5463 5292 247 253 49 31 chr13 45311452 45311614 -74433284 - L1ME4a LINE L1 -2 6119 5955 498 103 0 0 chr13 45312062 45312140 -74432758 + (TA)n Simple_repeat Simple_repeat 1 78 0 1093 180 129 69 chr13 45313758 45314259 -74430639 - LTR36 LTR ERV1 -5 606 1 326 80 13 40 chr13 45314735 45314810 -74430088 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 660 336 20 16 chr13 45314856 45315100 -74429798 - MLT1K LTR MaLR -238 350 106 315 278 100 96 chr13 45315309 45315579 -74429319 + L1MC4a LINE L1 5634 5904 -1904 680 262 119 7 chr13 45315727 45316013 -74428885 - L1MC4a LINE L1 -1894 5914 5597 610 306 13 0 chr13 45316262 45316419 -74428479 + MER5A DNA MER1_type 31 189 0 1993 125 4 0 chr13 45316576 45316886 -74428012 - AluJo SINE Alu 0 311 1 228 186 0 0 chr13 45316886 45316929 -74427969 + L1M4 LINE L1 3819 3861 -2285 247 294 17 25 chr13 45317064 45317183 -74427715 + CT-rich Low_complexity Low_complexity 1 118 0 21 57 0 0 chr13 45317742 45317777 -74427121 + AT_rich Low_complexity Low_complexity 1 35 0 363 23 0 0 chr13 45318041 45318085 -74426813 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 336 292 64 40 chr13 45318479 45318681 -74426217 - L1MC4a LINE L1 -1302 4844 4638 3937 73 4 37 chr13 45319240 45319776 -74425122 + SVA Other Other 866 1383 -3 1812 147 33 10 chr13 45319827 45320126 -74424772 + AluJb SINE Alu 2 307 -5 2355 94 3 28 chr13 45320631 45320951 -74423947 + AluSx SINE Alu 1 312 0 1291 164 14 0 chr13 45321115 45321335 -74423563 + AluJb SINE Alu 87 309 -3 219 204 0 0 chr13 45321562 45321616 -74423282 + T-rich Low_complexity Low_complexity 1 54 0 1279 49 6 0 chr13 45321619 45321782 -74423116 - L1PA4 LINE L1 -3 6152 5989 277 269 0 0 chr13 45322316 45322383 -74422515 - L2 LINE L2 -8 3264 3198 288 322 71 71 chr13 45322394 45322689 -74422209 - L2 LINE L2 -349 2965 2671 446 336 0 8 chr13 45323285 45323413 -74421485 - L2 LINE L2 0 3313 3187 232 267 0 17 chr13 45323475 45323535 -74421363 + L2 LINE L2 3214 3272 0 1017 274 68 57 chr13 45323924 45324398 -74420500 + MLT1J LTR MaLR 32 510 -1 273 274 14 0 chr13 45324866 45324939 -74419959 - MER117 DNA MER1_type -57 140 67 192 125 0 0 chr13 45325183 45325215 -74419683 + (TG)n Simple_repeat Simple_repeat 1 32 0 246 62 0 0 chr13 45325219 45325251 -74419647 + (TA)n Simple_repeat Simple_repeat 2 33 0 1895 154 6 16 chr13 45327551 45327862 -74417036 + AluJo SINE Alu 1 308 -4 1921 119 48 0 chr13 45329185 45329554 -74415344 + AluSx SINE Alu 1 382 0 23 33 0 0 chr13 45329883 45329913 -74414985 + AT_rich Low_complexity Low_complexity 1 30 0 330 261 23 0 chr13 45329957 45330045 -74414853 - MIR SINE MIR -73 189 100 2263 82 24 0 chr13 45330056 45330347 -74414551 + AluSq SINE Alu 1 298 -15 1378 167 21 41 chr13 45331649 45332110 -74412788 - MLT1D LTR MaLR -8 497 1 239 316 43 34 chr13 45332154 45332271 -74412627 - MIR SINE MIR -123 139 22 461 339 11 17 chr13 45332409 45332586 -74412312 + MIR3 SINE MIR 31 206 -2 292 270 27 0 chr13 45332615 45332689 -74412209 + MER5C DNA MER1_type 1 76 -248 728 283 22 96 chr13 45333120 45333234 -74411664 + MLT1I LTR MaLR 64 185 -224 2058 106 0 0 chr13 45333234 45333520 -74411378 + AluSx SINE Alu 17 302 0 728 283 22 96 chr13 45333520 45333768 -74411130 + MLT1I LTR MaLR 185 400 -9 1886 118 0 0 chr13 45333768 45334040 -74410858 - L1P4 LINE L1 -488 5673 5402 186 43 0 0 chr13 45334224 45334247 -74410651 + (CA)n Simple_repeat Simple_repeat 2 24 0 418 291 42 91 chr13 45334294 45334509 -74410389 + L2 LINE L2 2483 2684 -630 2314 89 0 43 chr13 45334509 45334834 -74410064 + AluY SINE Alu 1 311 0 418 291 42 91 chr13 45334834 45334883 -74410015 + L2 LINE L2 2684 2734 -580 14423 177 23 23 chr13 45334883 45335933 -74408965 + L1MA5A LINE L1 2661 3710 -3289 2045 145 3 0 chr13 45335933 45336229 -74408669 + AluSx SINE Alu 1 297 -15 14423 177 23 23 chr13 45336229 45337025 -74407873 + L1MA5A LINE L1 3710 4505 -2494 1876 138 0 27 chr13 45337025 45337322 -74407576 - AluSx SINE Alu -19 293 5 14423 177 23 23 chr13 45337322 45339808 -74405090 + L1MA5A LINE L1 4505 6998 -1 523 306 74 93 chr13 45339911 45340073 -74404825 + L2 LINE L2 2809 2973 -299 1265 210 34 27 chr13 45340073 45340368 -74404530 - AluJb SINE Alu -5 297 1 523 306 74 93 chr13 45340368 45340429 -74404469 + L2 LINE L2 2973 3034 -238 5091 90 18 26 chr13 45340429 45341209 -74403689 + L1MA2 LINE L1 5524 6297 -7 523 306 74 93 chr13 45341209 45341455 -74403443 + L2 LINE L2 3034 3270 -2 994 191 0 0 chr13 45341507 45341675 -74403223 - AluJo SINE Alu -24 288 121 2381 91 0 19 chr13 45341681 45341999 -74402899 - AluSq SINE Alu -1 312 1 331 269 13 0 chr13 45342073 45342151 -74402747 - L2 LINE L2 0 3313 3235 242 180 82 16 chr13 45342407 45342468 -74402430 - MLT1K LTR MaLR -12 576 512 394 324 9 0 chr13 45343307 45343412 -74401486 - L2 LINE L2 -2 3311 3206 2282 153 21 19 chr13 45343753 45344132 -74400766 + MSTB LTR MaLR 47 426 0 33 43 0 0 chr13 45344146 45344193 -74400705 + AT_rich Low_complexity Low_complexity 1 47 0 2147 129 0 0 chr13 45344286 45344588 -74400310 + AluSq SINE Alu 5 306 -7 2289 307 103 10 chr13 45344633 45345918 -74398980 - HAL1 LINE L1 -56 2451 1048 2582 205 12 2 chr13 45345939 45346525 -74398373 + L1 LINE L1 3178 3769 -2377 778 205 46 46 chr13 45346574 45346753 -74398145 - L1MD1 LINE L1 -8 6234 6053 1760 153 117 3 chr13 45346753 45347061 -74397837 - MER61A LTR ERV1 0 343 1 778 205 46 46 chr13 45347061 45347120 -74397778 - L1MD1 LINE L1 -188 6054 5996 621 296 127 59 chr13 45347122 45347642 -74397256 - HAL1 LINE L1 -1527 980 414 1453 130 18 102 chr13 45347642 45347774 -74397124 + AluSq SINE Alu 1 98 -215 2275 113 3 0 chr13 45347774 45348083 -74396815 + AluSx SINE Alu 1 310 -2 1453 130 18 102 chr13 45348083 45348235 -74396663 + AluSq SINE Alu 98 261 -52 621 296 127 59 chr13 45348235 45348306 -74396592 - HAL1 LINE L1 -2093 414 349 26 0 0 0 chr13 45348616 45348642 -74396256 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 45349376 45349398 -74395500 + AT_rich Low_complexity Low_complexity 1 22 0 1219 289 60 8 chr13 45349606 45350121 -74394777 + L1ME2 LINE L1 5399 5940 -230 233 189 11 84 chr13 45350344 45350534 -74394364 + (TTAA)n Simple_repeat Simple_repeat 4 179 0 337 345 28 0 chr13 45350582 45350724 -74394174 - L2 LINE L2 -341 2972 2827 404 289 25 46 chr13 45350793 45351032 -74393866 - L2 LINE L2 -2388 926 693 1527 170 98 48 chr13 45351574 45351910 -74392988 - MLT1A1 LTR MaLR 0 365 13 397 248 30 38 chr13 45351932 45352065 -74392833 - MIR SINE MIR -118 144 13 1327 240 92 33 chr13 45352513 45352971 -74391927 + L1MC4 LINE L1 7434 7918 -124 6304 134 23 23 chr13 45353011 45354738 -74390160 + L1MA5A LINE L1 4559 6296 -1 502 166 29 9 chr13 45355169 45355278 -74389620 + L1MC4 LINE L1 7671 8042 0 532 226 12 11 chr13 45355295 45355330 -74389568 + GA-rich Low_complexity Low_complexity 1 34 -551 2325 65 3 37 chr13 45355330 45355651 -74389247 + AluY SINE Alu 1 310 -1 532 226 12 11 chr13 45355651 45355880 -74389018 + GA-rich Low_complexity Low_complexity 34 585 0 198 143 0 0 chr13 45356654 45356689 -74388209 + (CA)n Simple_repeat Simple_repeat 1 35 0 194 289 19 0 chr13 45356894 45356946 -74387952 + L3 LINE CR1 1521 1573 -4 337 302 0 9 chr13 45357110 45357216 -74387682 - MIR SINE MIR -1 261 157 2157 103 7 20 chr13 45357233 45357533 -74387365 - AluSx SINE Alu -16 296 1 2371 92 7 0 chr13 45357716 45358022 -74386876 + AluSx SINE Alu 2 309 -3 469 228 26 9 chr13 45358027 45358141 -74386757 + L1ME2 LINE L1 6040 6155 -9 1233 177 357 0 chr13 45358287 45358682 -74386216 - L1ME2 LINE L1 -194 5970 5435 2201 110 0 3 chr13 45359023 45359322 -74385576 - AluSx SINE Alu -14 298 1 2490 157 44 0 chr13 45360478 45360885 -74384013 + MSTB LTR MaLR 2 426 0 451 258 61 0 chr13 45361063 45361195 -74383703 + MIR SINE MIR 66 205 -57 1495 213 14 70 chr13 45361779 45362193 -74382705 + MLT2C1 LTR ERVL 3 393 -4 874 101 122 0 chr13 45362469 45362617 -74382281 + LTR47A LTR ERVL 279 444 -8 258 269 132 12 chr13 45362828 45362995 -74381903 + L1MC/D LINE L1 5292 5478 -2330 281 151 38 0 chr13 45363003 45363056 -74381842 + L1MA10 LINE L1 6278 6332 -2 316 338 25 0 chr13 45363079 45363236 -74381662 + L1MC/D LINE L1 5493 5653 -468 236 236 0 0 chr13 45363271 45363315 -74381583 + GA-rich Low_complexity Low_complexity 4 50 -8 2111 143 3 10 chr13 45363315 45363629 -74381269 + AluSx SINE Alu 1 312 0 265 266 85 77 chr13 45363642 45363890 -74381008 + L1MC/D LINE L1 5648 5897 -224 198 200 22 0 chr13 45364457 45364502 -74380396 - L2 LINE L2 0 3272 3227 1520 271 50 30 chr13 45364835 45365334 -74379564 + MER21B LTR ERV1 317 825 -38 414 284 8 8 chr13 45366114 45366241 -74378657 - LTR67 LTR ERVL -3 554 428 274 346 31 16 chr13 45366310 45366437 -74378461 - LTR67 LTR ERVL -316 241 113 2359 86 3 3 chr13 45367389 45367690 -74377208 + AluSc SINE Alu 1 301 -8 528 221 29 125 chr13 45367788 45367996 -74376902 + HAL1 LINE L1 3 190 -2317 228 67 0 0 chr13 45368004 45368034 -74376864 + (T)n Simple_repeat Simple_repeat 1 30 0 956 18 0 0 chr13 45368035 45368144 -74376754 - L1PA2 LINE L1 -1 6154 6046 310 217 60 0 chr13 45369156 45369239 -74375659 - MER53 DNA DNA -96 93 6 324 303 56 14 chr13 45369489 45369631 -74375267 - MIR SINE MIR -52 210 63 325 319 113 16 chr13 45369958 45370143 -74374755 - MIR SINE MIR -33 229 27 1631 125 6 119 chr13 45370312 45370639 -74374259 - AluJo SINE Alu -8 294 5 1039 235 77 9 chr13 45370659 45370785 -74374113 - L2 LINE L2 -561 2753 2637 308 222 12 25 chr13 45370785 45370866 -74374032 - MER116 DNA Mariner 0 80 1 1039 235 77 9 chr13 45370866 45371079 -74373819 - L2 LINE L2 -677 2637 2391 290 231 179 85 chr13 45371130 45371342 -74373556 - L2 LINE L2 -1057 2257 2026 30 0 0 0 chr13 45371803 45371833 -74373065 + AT_rich Low_complexity Low_complexity 1 30 0 306 310 134 9 chr13 45371882 45372098 -74372800 - L2 LINE L2 -1367 1947 1705 1743 153 26 129 chr13 45372192 45372403 -74372495 + MLT1A2 LTR MaLR 1 149 -225 1818 123 14 61 chr13 45372403 45372696 -74372202 - AluSc SINE Alu -30 279 1 1743 153 26 129 chr13 45372696 45372901 -74371997 + MLT1A2 LTR MaLR 149 374 0 336 260 48 31 chr13 45372957 45373116 -74371782 - MLT1I LTR MaLR 0 409 293 825 263 124 4 chr13 45373367 45373626 -74371272 - MER115 DNA AcHobo -3 690 401 2012 94 42 14 chr13 45374016 45374304 -74370594 + AluSg SINE Alu 1 296 -14 1466 215 55 48 chr13 45374782 45374818 -74370080 - MLT1C LTR MaLR -26 441 407 2239 119 0 0 chr13 45374818 45375129 -74369769 + AluSx SINE Alu 1 311 -1 1466 215 55 48 chr13 45375129 45375530 -74369368 - MLT1C LTR MaLR -60 407 1 229 267 105 0 chr13 45375530 45375616 -74369282 - MIR SINE MIR -100 162 68 199 268 149 60 chr13 45375658 45375784 -74369114 - MIR SINE MIR -22 240 94 2462 126 38 14 chr13 45375784 45376206 -74368692 - MSTB1 LTR MaLR 0 432 1 199 268 149 60 chr13 45376206 45376247 -74368651 - MIR SINE MIR -168 94 58 427 291 35 14 chr13 45377024 45377165 -74367733 + MIR SINE MIR 23 166 -96 811 293 86 40 chr13 45378963 45379393 -74365505 + LTR16A LTR ERVL 1 450 0 685 193 8 0 chr13 45379541 45379660 -74365238 - MER58B DNA MER1_type -1 340 221 394 281 55 29 chr13 45380436 45380664 -74364234 + MIR SINE MIR 3 239 -23 21 57 0 0 chr13 45380934 45380969 -74363929 + AT_rich Low_complexity Low_complexity 1 35 0 785 136 8 0 chr13 45382226 45382344 -74362554 - L1PA16 LINE L1 -9 6157 6039 1972 136 0 3 chr13 45382389 45382676 -74362222 + AluSx SINE Alu 25 310 -2 2650 133 29 25 chr13 45382806 45382951 -74361947 + L1MB3 LINE L1 5687 5830 -353 2500 62 0 7 chr13 45382951 45383255 -74361643 + AluY SINE Alu 1 302 -9 2650 133 29 25 chr13 45383255 45383597 -74361301 + L1MB3 LINE L1 5830 6176 -7 2541 110 3 30 chr13 45383690 45383848 -74361050 + THE1B LTR MaLR 3 164 -200 2420 91 0 0 chr13 45383848 45384145 -74360753 - AluSc SINE Alu -12 297 1 2541 110 3 30 chr13 45384145 45384358 -74360540 + THE1B LTR MaLR 164 364 0 664 240 39 13 chr13 45384776 45384922 -74359976 - MER69A DNA AcHobo -2352 174 22 2266 108 0 23 chr13 45384922 45385227 -74359671 - AluSx SINE Alu -14 298 1 390 259 136 68 chr13 45386082 45386224 -74358674 + L1ME4a LINE L1 5270 5401 -720 1638 166 25 21 chr13 45386224 45386508 -74358390 + AluJo SINE Alu 1 285 -27 390 259 136 68 chr13 45386508 45386886 -74358012 + L1ME4a LINE L1 5401 5817 -304 261 284 94 16 chr13 45386918 45387045 -74357853 + L1ME4a LINE L1 5889 6025 -96 2449 75 3 0 chr13 45387072 45387367 -74357531 - AluSx SINE Alu -12 300 5 366 165 63 13 chr13 45387443 45387522 -74357376 + MLT1I LTR MaLR 319 401 -8 301 190 30 20 chr13 45387705 45387805 -74357093 - L1MC5 LINE L1 -525 7436 7336 2361 94 3 0 chr13 45388144 45388443 -74356455 - AluSx SINE Alu -8 304 5 2230 110 3 13 chr13 45388841 45389151 -74355747 + AluSp SINE Alu 1 307 -6 425 318 57 5 chr13 45389186 45389378 -74355520 - MIR SINE MIR -15 247 46 740 250 0 0 chr13 45389541 45389693 -74355205 + MER82 DNA MER2_type 2 153 -500 738 178 259 0 chr13 45389828 45390002 -74354896 + MER20 DNA MER1_type 1 219 0 1087 173 61 0 chr13 45390076 45390273 -74354625 + MER3 DNA MER1_type 1 209 0 233 268 0 0 chr13 45390273 45390344 -74354554 + L1MC4 LINE L1 7604 7674 -368 1296 156 125 8 chr13 45390506 45390762 -74354136 + L1MD3 LINE L1 7700 7985 -10 2195 116 0 10 chr13 45391613 45391916 -74352982 - AluSx SINE Alu -12 300 1 833 239 36 140 chr13 45392017 45392544 -74352354 - L2 LINE L2 0 3313 2842 1599 138 21 96 chr13 45393013 45393347 -74351551 - AluJo SINE Alu -3 309 1 505 118 0 0 chr13 45393380 45393456 -74351442 + AluJ/FLAM SINE Alu 2 77 -235 2447 58 31 0 chr13 45394073 45394365 -74350533 + AluY SINE Alu 1 301 -10 2330 117 0 3 chr13 45394635 45394943 -74349955 - AluSx SINE Alu -5 307 1 1857 133 3 36 chr13 45395567 45395876 -74349022 - AluSx SINE Alu -13 299 1 917 102 0 0 chr13 45396009 45396127 -74348771 + AluJb SINE Alu 1 118 -194 24 32 0 0 chr13 45396148 45396179 -74348719 + AT_rich Low_complexity Low_complexity 1 31 0 660 126 0 2 chr13 45397119 45397381 -74347517 + AluSx SINE Alu 1 313 0 297 314 8 40 chr13 45397890 45397954 -74346944 + MIR SINE MIR 137 197 -65 2288 88 7 13 chr13 45397954 45398261 -74346637 + AluSx SINE Alu 1 305 -7 297 314 8 40 chr13 45398261 45398320 -74346578 + MIR SINE MIR 197 256 -6 279 326 59 8 chr13 45398808 45398948 -74345950 + MIR SINE MIR 14 146 -62 2221 108 0 35 chr13 45398955 45399269 -74345629 + AluSq SINE Alu 1 303 -10 249 67 0 0 chr13 45400382 45400412 -74344486 + Alu SINE Alu 18 47 -128 1743 165 0 26 chr13 45400549 45400852 -74344046 + AluJb SINE Alu 2 296 -16 324 239 18 0 chr13 45400874 45400983 -74343915 + (TAA)n Simple_repeat Simple_repeat 1 111 0 2150 118 0 10 chr13 45401091 45401388 -74343510 + AluSg SINE Alu 1 294 -16 187 279 114 0 chr13 45401440 45401519 -74343379 + MIR SINE MIR 77 164 -98 457 196 61 68 chr13 45401534 45401697 -74343201 + MER112 DNA MER1_type 18 179 -81 2331 111 0 0 chr13 45402002 45402308 -74342590 + AluSx SINE Alu 1 306 -6 211 286 0 18 chr13 45403556 45403612 -74341286 - L2 LINE L2 -7 3306 3252 1404 202 20 0 chr13 45404613 45404866 -74340032 + Tigger7 DNA MER2_type 6 263 -2224 583 177 0 0 chr13 45404870 45404966 -74339932 + Tigger7 DNA MER2_type 2390 2485 -2 468 254 79 0 chr13 45405490 45405616 -74339282 - MER117 DNA MER1_type -52 145 10 1587 185 13 23 chr13 45406197 45406499 -74338399 - AluJo SINE Alu -13 299 1 593 230 0 2 chr13 45406899 45407086 -74337812 - MER58B DNA MER1_type -4 337 4 24 0 0 0 chr13 45409872 45409896 -74335002 + AT_rich Low_complexity Low_complexity 1 24 0 2326 107 0 0 chr13 45409946 45410255 -74334643 - AluSx SINE Alu -3 309 1 788 293 166 43 chr13 45410735 45411095 -74333803 + L2 LINE L2 2193 2507 -806 2019 107 4 0 chr13 45411095 45411358 -74333540 - AluSg SINE Alu -46 264 1 788 293 166 43 chr13 45411358 45411386 -74333512 + L2 LINE L2 2507 2530 -783 1535 54 5 0 chr13 45411386 45411572 -74333326 - U2 snRNA snRNA -1 187 1 788 293 166 43 chr13 45411572 45412185 -74332713 + L2 LINE L2 2530 3308 -5 2305 94 7 0 chr13 45412232 45412530 -74332368 + AluSx SINE Alu 1 300 -12 2616 133 21 25 chr13 45412805 45413240 -74331658 + Tigger2a DNA MER2_type 1 433 -1 347 269 34 7 chr13 45413241 45413390 -74331508 + (TA)n Simple_repeat Simple_repeat 2 154 0 341 238 127 75 chr13 45413668 45414029 -74330869 - L1ME4a LINE L1 -89 6032 5653 2136 125 7 0 chr13 45414239 45414544 -74330354 - AluSx SINE Alu -5 307 1 339 274 25 89 chr13 45415072 45415229 -74329669 - L2 LINE L2 -2 3311 3165 331 270 110 57 chr13 45415888 45416063 -74328835 + L2 LINE L2 3020 3215 -98 2097 102 54 3 chr13 45416063 45416357 -74328541 - AluSq SINE Alu -4 309 1 331 270 110 57 chr13 45416357 45416444 -74328454 + L2 LINE L2 3215 3296 -17 187 299 13 39 chr13 45417383 45417460 -74327438 - MIR SINE MIR -106 102 28 250 279 59 0 chr13 45417762 45417830 -74327068 - Charlie7 DNA MER1_type -2538 74 3 2719 192 39 29 chr13 45417993 45418553 -74326345 + L1MB8 LINE L1 5542 6095 -83 2108 71 4 11 chr13 45418553 45418821 -74326077 - AluSp SINE Alu -5 308 43 1550 188 15 0 chr13 45418821 45419082 -74325816 - AluJb SINE Alu -47 265 1 2719 192 39 29 chr13 45419082 45419136 -74325762 + L1MB8 LINE L1 6094 6163 -15 2209 95 7 14 chr13 45419522 45419816 -74325082 - AluSq SINE Alu -21 292 1 390 226 165 12 chr13 45419992 45420156 -74324742 + L1MC5 LINE L1 7737 7925 -36 184 259 17 17 chr13 45420445 45420503 -74324395 - MIR SINE MIR -4 258 201 214 143 24 24 chr13 45422046 45422088 -74322810 + MIR SINE MIR 72 113 -149 206 300 27 64 chr13 45423202 45423312 -74321586 - MIR SINE MIR -73 135 30 2116 93 40 13 chr13 45424907 45425208 -74319690 + AluSx SINE Alu 1 309 -3 394 162 10 10 chr13 45425211 45425310 -74319588 + GA-rich Low_complexity Low_complexity 2 100 0 722 75 5 101 chr13 45425320 45425519 -74319379 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 207 139 0 0 chr13 45425530 45425566 -74319332 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 441 332 86 17 chr13 45426076 45426308 -74318590 - MIR SINE MIR -8 254 7 1427 179 33 0 chr13 45427447 45427720 -74317178 + L1MB4 LINE L1 5892 6173 -7 238 115 39 0 chr13 45427738 45427790 -74317108 + (TA)n Simple_repeat Simple_repeat 1 54 0 2305 118 0 6 chr13 45427905 45428219 -74316679 - AluSx SINE Alu 0 312 1 1902 152 3 16 chr13 45428219 45428528 -74316370 - AluJb SINE Alu -7 305 1 2150 128 3 0 chr13 45428550 45428854 -74316044 + AluSx SINE Alu 2 306 -6 4904 110 49 15 chr13 45429036 45429789 -74315109 + MER4E LTR ERV1 1 779 0 477 110 0 0 chr13 45429821 45429894 -74315004 + (GA)n Simple_repeat Simple_repeat 2 74 0 1980 37 0 8 chr13 45431800 45432042 -74312856 - L1PA8 LINE L1 -243 5929 5690 1763 77 0 46 chr13 45432044 45432186 -74312712 + L1PA8 LINE L1 5925 6052 -120 2284 96 0 0 chr13 45432186 45432497 -74312401 + AluSg1 SINE Alu 1 311 0 1763 77 0 46 chr13 45432497 45432612 -74312286 + L1PA8 LINE L1 6052 6171 -1 1305 114 0 0 chr13 45432661 45432836 -74312062 + AluSq SINE Alu 131 305 -8 424 224 47 47 chr13 45433034 45433141 -74311757 + MLT1D LTR MaLR 1 107 -398 1025 135 0 0 chr13 45433148 45433289 -74311609 + AluJb SINE Alu 1 141 -171 47 19 0 0 chr13 45433304 45433358 -74311540 + AT_rich Low_complexity Low_complexity 1 54 0 1627 185 46 80 chr13 45433359 45433723 -74311175 + MLT1D LTR MaLR 117 439 -66 2208 119 3 0 chr13 45433723 45434025 -74310873 - AluSx SINE Alu -9 303 1 1627 185 46 80 chr13 45434025 45434088 -74310810 + MLT1D LTR MaLR 439 503 -2 189 173 19 39 chr13 45434216 45434268 -74310630 + L2 LINE L2 3263 3313 0 1611 140 186 69 chr13 45434385 45434793 -74310105 + MLT2B1 LTR ERVL 2 457 -63 2220 112 3 0 chr13 45434804 45435109 -74309789 + AluSx SINE Alu 4 309 -3 230 203 127 0 chr13 45435144 45435223 -74309675 - L1MC4 LINE L1 -1337 6705 6617 296 200 13 0 chr13 45435236 45435311 -74309587 + (TA)n Simple_repeat Simple_repeat 1 76 0 301 56 0 0 chr13 45435346 45435382 -74309516 + MLT2B1 LTR ERVL 477 512 -8 1950 138 9 52 chr13 45435541 45435866 -74309032 - AluSx SINE Alu 0 312 2 1786 142 35 35 chr13 45435898 45436018 -74308880 + AluJo SINE Alu 1 120 -192 231 36 0 0 chr13 45436018 45436046 -74308852 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1786 142 35 35 chr13 45436046 45436236 -74308662 + AluJo SINE Alu 119 311 -1 201 74 0 0 chr13 45436258 45436285 -74308613 + (TTG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr13 45436285 45436308 -74308590 + AT_rich Low_complexity Low_complexity 1 23 0 2144 117 0 3 chr13 45437052 45437343 -74307555 - AluSx SINE Alu -22 290 1 769 185 0 0 chr13 45437424 45437559 -74307339 + FLAM_C SINE Alu 7 141 -2 2183 99 0 0 chr13 45437820 45438092 -74306806 - AluSg SINE Alu -38 272 1 196 304 51 13 chr13 45438255 45438334 -74306564 - L2 LINE L2 -518 2796 2715 341 305 199 0 chr13 45438390 45438541 -74306357 - MER5A DNA MER1_type 0 189 9 2131 116 24 3 chr13 45438845 45439138 -74305760 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr13 45439291 45439312 -74305586 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr13 45439420 45439444 -74305454 + (CA)n Simple_repeat Simple_repeat 2 25 0 293 219 0 61 chr13 45439456 45439513 -74305385 + MIR SINE MIR 185 237 -25 3048 126 108 24 chr13 45439513 45440062 -74304836 + LTR49 LTR ERV1 1 595 0 293 219 0 61 chr13 45440062 45440086 -74304812 + MIR SINE MIR 237 261 -1 1725 190 0 13 chr13 45440108 45440418 -74304480 + AluJo SINE Alu 3 308 -4 272 294 54 11 chr13 45440443 45440535 -74304363 + MIR SINE MIR 151 246 -16 308 179 9 38 chr13 45440571 45440677 -74304221 + GA-rich Low_complexity Low_complexity 2 104 0 240 162 0 0 chr13 45440740 45440777 -74304121 + MER63 DNA MER1_type 1 37 -173 217 284 0 102 chr13 45440791 45440918 -74303980 - L2 LINE L2 -3194 120 7 267 83 0 21 chr13 45440963 45441011 -74303887 + L1MB4 LINE L1 6130 6176 -4 2157 107 37 0 chr13 45441786 45442085 -74302813 - AluSx SINE Alu -2 310 1 206 281 0 16 chr13 45442282 45442346 -74302552 + L2 LINE L2 3250 3312 -1 407 160 25 25 chr13 45442929 45443048 -74301850 + GA-rich Low_complexity Low_complexity 3 121 0 565 163 0 0 chr13 45443457 45443543 -74301355 + AluJ/FRAM SINE Alu 219 304 -8 1290 198 145 26 chr13 45443688 45444094 -74300804 + MER66B LTR ERV1 97 486 0 1039 241 36 53 chr13 45444505 45444625 -74300273 + L1ME1 LINE L1 4787 4907 -1239 2432 63 23 0 chr13 45444625 45444927 -74299971 + AluY SINE Alu 1 309 -2 1039 241 36 53 chr13 45444927 45445163 -74299735 + L1ME1 LINE L1 4907 5137 -1009 12494 113 7 38 chr13 45445272 45447679 -74297219 - L1P3 LINE L1 -4071 2390 1 910 268 90 34 chr13 45447730 45448235 -74296663 + L1ME1 LINE L1 5633 6163 -3 580 175 29 0 chr13 45448579 45448682 -74296216 + U6 snRNA snRNA 2 107 0 21319 172 10 10 chr13 45448682 45453106 -74291792 + L1PA11 LINE L1 1261 5688 -486 2405 84 0 0 chr13 45453106 45453414 -74291484 - AluY SINE Alu -3 308 1 21319 172 10 10 chr13 45453414 45453902 -74290996 + L1PA11 LINE L1 5688 6174 0 214 211 66 13 chr13 45453906 45453982 -74290916 + (TTAAA)n Simple_repeat Simple_repeat 4 83 0 1587 112 0 0 chr13 45453982 45454223 -74290675 + L1MA3 LINE L1 6064 6304 -1 22 35 0 0 chr13 45455786 45455815 -74289083 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 45455923 45455944 -74288954 + AT_rich Low_complexity Low_complexity 1 21 0 321 399 45 30 chr13 45456563 45456831 -74288067 + L2 LINE L2 2997 3268 -4 390 359 24 14 chr13 45457328 45457537 -74287361 + MLT1I LTR MaLR 196 406 -3 258 164 284 0 chr13 45458186 45458253 -74286645 + MLT1H LTR MaLR 421 506 -43 1207 201 106 19 chr13 45458266 45458625 -74286273 - MLT1B LTR MaLR 0 390 1 2320 100 7 0 chr13 45458748 45459057 -74285841 + AluSx SINE Alu 2 312 0 301 169 156 0 chr13 45459228 45459305 -74285593 - L1MA9 LINE L1 -7 6305 6217 502 228 48 68 chr13 45459356 45459562 -74285336 + LTR52 LTR ERVL 15 216 -205 5084 278 79 65 chr13 45459674 45461854 -74283044 + LTR52-int LTR ERVL 1 2220 -1336 234 0 0 0 chr13 45461854 45461880 -74283018 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5084 278 79 65 chr13 45461880 45462108 -74282790 + LTR52-int LTR ERVL 2220 2443 -1113 406 365 35 10 chr13 45462120 45462323 -74282575 + LTR52-int LTR ERVL 2806 3013 -543 532 304 96 29 chr13 45462324 45462736 -74282162 - L1MEc LINE L1 -3651 2564 2158 339 263 59 17 chr13 45463218 45463336 -74281562 - HAL1 LINE L1 -866 1641 1519 208 382 32 0 chr13 45464125 45464248 -74280650 + L2 LINE L2 2911 3037 -276 283 149 60 45 chr13 45464399 45464466 -74280432 - L1MC1 LINE L1 -1 6332 6265 2152 191 76 56 chr13 45464470 45464822 -74280076 + MER44D DNA MER2_type 1 344 -2143 1860 127 46 62 chr13 45464822 45465149 -74279749 + THE1B LTR MaLR 1 323 -41 2234 99 3 0 chr13 45465149 45465451 -74279447 - AluSq SINE Alu -10 303 1 1860 127 46 62 chr13 45465451 45465493 -74279405 + THE1B LTR MaLR 323 364 0 2152 191 76 56 chr13 45465493 45465587 -74279311 + MER44D DNA MER2_type 344 435 -2052 2349 142 37 28 chr13 45465587 45466016 -74278882 + Tigger2a DNA MER2_type 1 433 -1 2152 191 76 56 chr13 45466016 45466107 -74278791 + MER44D DNA MER2_type 435 605 0 2525 217 42 20 chr13 45466109 45467290 -74277608 - L1MC1 LINE L1 -73 6260 4810 21 0 0 0 chr13 45468788 45468809 -74276089 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr13 45469179 45469213 -74275685 + AT_rich Low_complexity Low_complexity 1 34 0 281 219 14 0 chr13 45470046 45470119 -74274779 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 571 253 29 6 chr13 45470452 45470626 -74274272 - MER5B DNA MER1_type 0 178 1 402 328 8 0 chr13 45472310 45472429 -74272469 - L2 LINE L2 0 3272 3153 25 0 0 0 chr13 45472835 45472860 -74272038 + AT_rich Low_complexity Low_complexity 1 25 0 230 253 184 0 chr13 45472915 45473002 -74271896 + Charlie8 DNA MER1_type 2315 2417 0 1985 321 132 39 chr13 45473413 45474835 -74270063 + L2 LINE L2 492 2045 -1269 393 354 19 19 chr13 45476439 45476648 -74268250 + L2 LINE L2 2038 2246 -1068 244 269 234 0 chr13 45477180 45477325 -74267573 + MIR SINE MIR 83 261 -1 282 329 13 20 chr13 45478318 45478467 -74266431 - LTR28 LTR ERV1 0 1755 1608 * 907 204 185 158 chr13 45478452 45479275 -74265623 - LTR28 LTR ERV1 -261 1494 280 22 0 0 0 chr13 45479847 45479869 -74265029 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr13 45481210 45481252 -74263646 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 45481699 45481720 -74263178 + AT_rich Low_complexity Low_complexity 1 21 0 373 296 56 5 chr13 45482119 45482315 -74262583 + L1M4 LINE L1 4645 4850 -1296 219 103 0 0 chr13 45482318 45482357 -74262541 + (TC)n Simple_repeat Simple_repeat 2 40 0 330 26 0 0 chr13 45482517 45482556 -74262342 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr13 45484185 45484213 -74260685 + AT_rich Low_complexity Low_complexity 1 28 0 182 146 0 104 chr13 45484535 45484583 -74260315 + L2 LINE L2 3270 3312 -1 408 20 0 0 chr13 45485957 45486006 -74258892 + (CA)n Simple_repeat Simple_repeat 2 50 0 248 77 26 0 chr13 45486298 45486337 -74258561 + (TC)n Simple_repeat Simple_repeat 1 40 0 207 186 0 0 chr13 45486336 45486379 -74258519 + (CA)n Simple_repeat Simple_repeat 1 43 0 * 312 315 45 0 chr13 45486397 45486486 -74258412 - L2 LINE L2 -16 3297 3205 298 296 61 9 chr13 45487306 45487421 -74257477 + MIR SINE MIR 66 186 -76 15237 139 26 53 chr13 45488011 45490819 -74254079 - Tigger4(Zombi) DNA MER2_type 0 2731 2 214 337 42 0 chr13 45491259 45491354 -74253544 + MIR SINE MIR 91 189 -73 351 65 0 0 chr13 45492074 45492120 -74252778 + (CA)n Simple_repeat Simple_repeat 2 47 0 280 279 29 10 chr13 45492328 45492432 -74252466 - L1MC/D LINE L1 -2024 5784 5679 424 284 132 104 chr13 45492466 45492861 -74252037 + LTR67 LTR ERVL 20 425 -132 342 339 22 46 chr13 45492935 45493196 -74251702 - L1MC/D LINE L1 -716 5448 5194 2420 59 3 0 chr13 45493696 45493999 -74250899 - AluY SINE Alu -7 304 1 454 236 75 46 chr13 45494271 45494445 -74250453 - LTR41 LTR ERVL -592 181 3 208 348 77 13 chr13 45494455 45494610 -74250288 - L2 LINE L2 -39 3274 3110 194 326 148 30 chr13 45494888 45495023 -74249875 - L2 LINE L2 -1339 1975 1825 253 176 54 40 chr13 45495073 45495147 -74249751 + Charlie8 DNA MER1_type 79 153 -2264 7338 32 17 0 chr13 45495237 45496121 -74248777 - L1PA5 LINE L1 -1 6153 5255 10207 40 9 0 chr13 45495251 45497173 -74247725 - L1PA5 LINE L1 -15 6139 4196 194 100 67 17 chr13 45497979 45498039 -74246859 + T-rich Low_complexity Low_complexity 6 68 0 2046 161 3 0 chr13 45498057 45498368 -74246530 - AluJb SINE Alu 0 312 1 296 243 39 48 chr13 45498464 45498567 -74246331 - MIR SINE MIR -119 143 42 264 77 51 0 chr13 45498584 45498623 -74246275 - MADE1 DNA Mariner -39 41 1 2305 145 58 24 chr13 45498938 45499352 -74245546 + MSTA LTR MaLR 1 428 0 203 198 185 0 chr13 45499516 45499597 -74245301 - MIR SINE MIR -69 193 98 240 263 51 15 chr13 45501038 45501175 -74243723 - Charlie7 DNA MER1_type -33 2579 2438 226 300 30 40 chr13 45501161 45501261 -74243637 - Charlie7 DNA MER1_type -2507 105 7 * 4820 186 12 17 chr13 45501859 45503261 -74241637 - L1MB8 LINE L1 -6 6172 4779 4033 35 2 15 chr13 45504344 45504806 -74240092 - SVA Other Other 0 1386 931 372 22 0 0 chr13 45506909 45506954 -74237944 + (CA)n Simple_repeat Simple_repeat 2 46 0 248 77 26 0 chr13 45507246 45507285 -74237613 + (TC)n Simple_repeat Simple_repeat 1 40 0 207 186 0 0 chr13 45507284 45507327 -74237571 + (CA)n Simple_repeat Simple_repeat 1 43 0 * 308 315 45 0 chr13 45507345 45507434 -74237464 - L2 LINE L2 -16 3297 3205 265 296 61 9 chr13 45508254 45508369 -74236529 + MIR SINE MIR 66 186 -76 15614 138 26 53 chr13 45508963 45511766 -74233132 - Tigger4(Zombi) DNA MER2_type -4 2727 2 190 337 42 0 chr13 45512206 45512301 -74232597 + MIR SINE MIR 91 189 -73 204 125 0 0 chr13 45513020 45513052 -74231846 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 284 27 16 chr13 45513229 45513364 -74231534 - L1ME LINE L1 -308 5813 5679 422 277 136 102 chr13 45513382 45513793 -74231105 + LTR67 LTR ERVL 1 425 -132 328 339 22 46 chr13 45513867 45514128 -74230770 - L1ME LINE L1 -714 5448 5194 2487 56 3 0 chr13 45514628 45514931 -74229967 - AluY SINE Alu -7 304 1 462 236 75 46 chr13 45515203 45515377 -74229521 - LTR41 LTR ERVL -592 181 3 258 176 54 40 chr13 45516005 45516079 -74228819 + Charlie8 DNA MER1_type 79 153 -2264 3337 47 0 0 chr13 45516169 45516550 -74228348 - L1PA5 LINE L1 -1 6153 5773 238 331 79 7 chr13 45516914 45517053 -74227845 + MIR SINE MIR 96 244 -18 2620 173 47 29 chr13 45517226 45517510 -74227388 - Tigger3(Golem) DNA MER2_type 0 3029 2752 261 0 0 0 chr13 45517510 45517539 -74227359 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2620 173 47 29 chr13 45517539 45517808 -74227090 - Tigger3(Golem) DNA MER2_type -277 2752 2466 200 154 77 0 chr13 45518527 45518566 -74226332 - L2 LINE L2 -11 3302 3261 25 0 0 0 chr13 45519133 45519158 -74225740 + AT_rich Low_complexity Low_complexity 1 25 0 3702 59 0 2 chr13 45519171 45519609 -74225289 - L1PA5 LINE L1 -11 6143 5707 1000 213 228 38 chr13 45520283 45521325 -74223573 - SATR1 Satellite Satellite -8 1240 1 864 236 308 4 chr13 45521364 45522511 -74222387 - SATR1 Satellite Satellite -1 1495 1 345 241 170 9 chr13 45522638 45522750 -74222148 - SATR1 Satellite Satellite -144 326 197 586 259 72 31 chr13 45522833 45523126 -74221772 - SATR1 Satellite Satellite -24 446 142 332 229 99 164 chr13 45523196 45523519 -74221379 + L1M4b LINE L1 340 641 -6218 1772 100 4 12 chr13 45523589 45523848 -74221050 + HERVE LTR ERV1 3249 3505 -4308 * 3233 99 0 5 chr13 45523842 45524288 -74220610 + HERVE LTR ERV1 3403 3846 -3967 4172 99 7 8 chr13 45524751 45525347 -74219551 + HERVE LTR ERV1 3249 3843 -3970 295 134 6 17 chr13 45525415 45525477 -74219421 - Alu SINE Alu -263 40 1 840 163 0 0 chr13 45525701 45525824 -74219074 + FLAM_C SINE Alu 1 123 -20 30 45 0 0 chr13 45525824 45525868 -74219030 + AT_rich Low_complexity Low_complexity 1 44 0 678 130 37 0 chr13 45525887 45525995 -74218903 - L1MA5A LINE L1 -4 6293 6182 208 323 31 10 chr13 45526549 45526645 -74218253 + MIR SINE MIR 101 198 -64 293 244 26 0 chr13 45526664 45526742 -74218156 - L1MEc LINE L1 -4516 1880 1801 904 143 0 0 chr13 45526758 45526891 -74218007 + FLAM_C SINE Alu 1 133 0 2035 69 0 23 chr13 45526994 45527256 -74217642 + AluY SINE Alu 1 256 -55 2254 91 0 0 chr13 45527293 45527579 -74217319 + AluY SINE Alu 21 306 -5 2257 111 3 13 chr13 45527592 45527899 -74216999 + AluSx SINE Alu 1 304 -8 539 251 121 36 chr13 45528127 45528457 -74216441 - L1ME4a LINE L1 0 6121 5764 2703 110 128 125 chr13 45528666 45528786 -74216112 + MER4A LTR ERV1 1 119 -545 2102 120 0 3 chr13 45528786 45529110 -74215788 - AluSx SINE Alu 0 323 1 2193 122 0 0 chr13 45529116 45529419 -74215479 - AluSp SINE Alu -10 303 1 2703 110 128 125 chr13 45529419 45529952 -74214946 + MER4A LTR ERV1 123 664 0 2277 105 3 0 chr13 45530327 45530631 -74214267 + AluSg SINE Alu 1 305 -5 1832 161 0 20 chr13 45530640 45530939 -74213959 + AluSx SINE Alu 1 293 -19 2023 171 25 33 chr13 45531124 45531492 -74213406 + MLT1A1 LTR MaLR 1 365 0 2205 106 0 3 chr13 45531520 45531812 -74213086 + AluSg SINE Alu 2 292 -18 28 0 0 0 chr13 45531812 45531840 -74213058 + AT_rich Low_complexity Low_complexity 1 28 0 832 154 0 0 chr13 45533293 45533423 -74211475 - FLAM_A SINE Alu 0 142 13 2212 104 3 0 chr13 45533599 45533886 -74211012 - AluSp SINE Alu -25 288 1 241 180 45 108 chr13 45534208 45534319 -74210579 + L1ME3A LINE L1 5879 5982 -202 314 189 8 118 chr13 45534346 45534433 -74210465 + L1ME3A LINE L1 5963 6033 -137 3763 100 67 43 chr13 45534433 45535001 -74209897 - LTR9 LTR ERV1 0 612 28 2418 57 0 13 chr13 45535001 45535302 -74209596 - AluY SINE Alu -14 297 1 3763 100 67 43 chr13 45535302 45535331 -74209567 - LTR9 LTR ERV1 -584 28 1 314 189 8 118 chr13 45535331 45535370 -74209528 + L1ME3A LINE L1 6033 6075 -95 607 199 88 178 chr13 45535380 45535812 -74209086 + MSTD LTR MaLR 4 396 0 367 237 81 116 chr13 45536586 45536759 -74208139 - L2 LINE L2 -35 3278 3112 3016 85 3 0 chr13 45537890 45538253 -74206645 + THE1B LTR MaLR 1 364 0 470 212 140 78 chr13 45538336 45538529 -74206369 + MER63A DNA MER1_type 1 205 -5 532 128 9 73 chr13 45539620 45539729 -74205169 - L1MA4 LINE L1 -13 6287 6186 862 219 0 0 chr13 45539730 45539876 -74205022 + AluJb SINE Alu 140 285 -27 306 67 0 0 chr13 45540075 45540120 -74204778 + (TG)n Simple_repeat Simple_repeat 2 46 0 3766 175 25 117 chr13 45540121 45541090 -74203808 + MER21A LTR ERV1 24 903 -28 1039 157 27 11 chr13 45541111 45541296 -74203602 - L1 LINE L1 -1131 5015 4828 2189 246 55 33 chr13 45541303 45541345 -74203553 - L1M1 LINE L1 -4096 1232 1192 1707 127 109 8 chr13 45541345 45541612 -74203286 + AluSx SINE Alu 1 294 -18 2189 246 55 33 chr13 45541612 45542391 -74202507 - L1M1 LINE L1 -4136 1192 560 1524 125 36 20 chr13 45542408 45542656 -74202242 + L1MA5A LINE L1 6046 6297 0 218 282 313 8 chr13 45542936 45543067 -74201831 + MER5B DNA MER1_type 2 172 -6 434 121 0 0 chr13 45543167 45543225 -74201673 + AluS SINE Alu 2 59 -251 221 364 61 6 chr13 45543740 45543905 -74200993 + L2 LINE L2 1757 1930 -1384 2089 174 6 88 chr13 45543905 45544061 -74200837 + L1ME1 LINE L1 5449 5616 -550 2337 106 0 0 chr13 45544061 45544364 -74200534 + AluY SINE Alu 1 303 -8 2089 174 6 88 chr13 45544364 45544437 -74200461 + L1ME1 LINE L1 5616 5693 -473 1864 207 34 11 chr13 45544437 45544790 -74200108 - MLT1A1 LTR MaLR 0 365 5 2089 174 6 88 chr13 45544790 45545060 -74199838 + L1ME1 LINE L1 5693 5908 -258 2385 98 143 11 chr13 45545060 45545438 -74199460 - MSTA LTR MaLR 0 428 1 707 252 34 64 chr13 45545438 45545704 -74199194 + L1ME1 LINE L1 5904 6161 -5 305 294 24 32 chr13 45545722 45545848 -74199050 + L2 LINE L2 1917 2041 -1273 2137 119 0 0 chr13 45546179 45546474 -74198424 + AluSx SINE Alu 1 295 -17 2173 123 0 3 chr13 45548447 45548749 -74196149 - AluSx SINE Alu -11 301 1 225 183 270 78 chr13 45548767 45548882 -74196016 - MIR SINE MIR -118 144 8 186 71 0 0 chr13 45548935 45548963 -74195935 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 291 231 94 43 chr13 45549134 45549251 -74195647 + MIR SINE MIR 23 145 -63 180 220 186 17 chr13 45549585 45549644 -74195254 - L2 LINE L2 -8 3264 3196 2093 124 0 0 chr13 45550545 45550853 -74194045 - AluSx SINE Alu 0 308 1 194 298 53 76 chr13 45550855 45550944 -74193954 - L2 LINE L2 -1 3271 3184 2453 87 0 3 chr13 45550944 45551256 -74193642 + AluSx SINE Alu 1 311 -1 194 298 53 76 chr13 45551256 45551297 -74193601 - L2 LINE L2 -88 3184 3144 221 198 208 28 chr13 45551438 45551544 -74193354 + MIR SINE MIR 20 144 -64 2384 122 53 10 chr13 45551635 45552028 -74192870 - L1MB3 LINE L1 -2 6181 5772 2219 161 34 6 chr13 45552206 45552561 -74192337 - MLT1A1 LTR MaLR 0 365 1 423 298 89 25 chr13 45553430 45553588 -74191310 + MIR SINE MIR 24 191 -71 2095 132 10 0 chr13 45553595 45553890 -74191008 - AluSx SINE Alu -13 299 2 1785 141 35 35 chr13 45553922 45554042 -74190856 + AluJo SINE Alu 1 120 -192 303 28 0 0 chr13 45554042 45554078 -74190820 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1785 141 35 35 chr13 45554078 45554269 -74190629 + AluJo SINE Alu 119 312 0 201 74 0 0 chr13 45554291 45554318 -74190580 + (TTG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr13 45554318 45554341 -74190557 + AT_rich Low_complexity Low_complexity 1 23 0 2125 117 0 3 chr13 45555085 45555376 -74189522 - AluSx SINE Alu -22 290 1 819 181 0 21 chr13 45555453 45555597 -74189301 + FLAM_C SINE Alu 3 143 0 393 22 0 0 chr13 45556215 45556261 -74188637 + (CA)n Simple_repeat Simple_repeat 2 47 0 232 376 35 14 chr13 45557202 45557343 -74187555 - MIR SINE MIR 0 262 119 2266 97 23 0 chr13 45557454 45557753 -74187145 + AluSq SINE Alu 1 306 -7 2074 104 27 27 chr13 45557844 45558143 -74186755 + AluSx SINE Alu 1 299 -13 2295 97 0 3 chr13 45558255 45558555 -74186343 + AluSq SINE Alu 1 299 -14 2238 204 67 71 chr13 45559004 45560276 -74184622 + L1MC4 LINE L1 4711 5397 -749 1966 133 56 0 chr13 45560509 45560794 -74184104 - AluSx SINE Alu -11 301 1 256 179 18 18 chr13 45561111 45561167 -74183731 + L1M4 LINE L1 4188 4243 -1903 503 229 133 60 chr13 45561240 45561508 -74183390 - MLT1H1 LTR MaLR -30 525 186 893 132 0 8 chr13 45561805 45561934 -74182964 + AluJb SINE Alu 26 153 -159 10173 42 9 0 chr13 45562870 45564803 -74180095 - L1PA5 LINE L1 -4 6150 4196 194 100 67 17 chr13 45565608 45565668 -74179230 + T-rich Low_complexity Low_complexity 6 68 0 2005 167 3 0 chr13 45565686 45565997 -74178901 - AluJb SINE Alu 0 312 1 296 243 39 48 chr13 45566093 45566196 -74178702 - MIR SINE MIR -119 143 42 264 77 51 0 chr13 45566213 45566252 -74178646 - MADE1 DNA Mariner -39 41 1 820 90 0 30 chr13 45566675 45566841 -74178057 - SVA Other Other -606 780 620 826 124 0 0 chr13 45566853 45566966 -74177932 - AluJb SINE Alu -187 125 13 247 206 0 15 chr13 45568078 45568127 -74176771 + A-rich Low_complexity Low_complexity 4 53 -17 243 0 0 0 chr13 45568127 45568154 -74176744 + (CA)n Simple_repeat Simple_repeat 2 28 0 247 206 0 15 chr13 45568154 45568172 -74176726 + A-rich Low_complexity Low_complexity 53 70 0 2245 103 0 7 chr13 45569140 45569432 -74175466 + AluSg SINE Alu 1 290 -20 2202 110 16 7 chr13 45569789 45570098 -74174800 + AluSx SINE Alu 1 312 0 386 275 259 0 chr13 45570100 45570231 -74174667 - MER5A DNA MER1_type -16 173 9 382 312 163 21 chr13 45570414 45570843 -74174055 - LTR33 LTR ERVL -4 517 28 467 139 0 0 chr13 45571821 45571900 -74172998 - L1MB4 LINE L1 -5 6175 6097 22 0 0 0 chr13 45571907 45571929 -74172969 + AT_rich Low_complexity Low_complexity 1 22 0 2321 100 6 3 chr13 45572007 45572318 -74172580 - AluSq SINE Alu -1 312 1 514 197 58 122 chr13 45572660 45572848 -74172050 + MIR SINE MIR 17 192 -70 594 247 89 49 chr13 45572851 45573139 -74171759 - MLT1J2 LTR MaLR -3 447 102 207 0 0 0 chr13 45573156 45573179 -74171719 + (A)n Simple_repeat Simple_repeat 1 23 0 456 242 100 0 chr13 45573179 45573299 -74171599 - LTR33 LTR ERVL -17 504 373 262 324 142 17 chr13 45573340 45573516 -74171382 - LTR33 LTR ERVL -321 200 3 231 250 0 0 chr13 45573519 45573571 -74171327 + MIR SINE MIR 199 250 -12 333 273 103 48 chr13 45574249 45574414 -74170484 - L3 LINE CR1 0 1577 1404 * 347 324 67 31 chr13 45574408 45574633 -74170265 - MIR SINE MIR -22 240 8 192 306 74 28 chr13 45574818 45574889 -74170009 - MIR SINE MIR -70 192 113 1913 181 0 6 chr13 45574889 45575203 -74169695 + AluJb SINE Alu 1 312 0 192 306 74 28 chr13 45575203 45575239 -74169659 - MIR SINE MIR -149 113 80 235 344 42 21 chr13 45575245 45575341 -74169557 - MIR3 SINE MIR -107 101 4 195 42 0 0 chr13 45576165 45576189 -74168709 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1158 169 5 50 chr13 45576194 45576413 -74168485 - AluJb SINE Alu -23 289 81 2448 140 8 3 chr13 45576543 45576907 -74167991 + MER47A DNA MER2_type 1 366 0 232 290 43 0 chr13 45577086 45577155 -74167743 - MIR SINE MIR -31 231 160 277 311 172 8 chr13 45577769 45577891 -74167007 + L2 LINE L2 3129 3270 -2 207 299 37 19 chr13 45578727 45578834 -74166064 + MIR SINE MIR 100 208 -54 1103 179 20 0 chr13 45578937 45579133 -74165765 - MER44D DNA MER2_type -2 703 504 22 35 0 0 chr13 45579523 45579552 -74165346 + AT_rich Low_complexity Low_complexity 1 29 0 1610 38 0 0 chr13 45579818 45580080 -74164818 + (G)n Simple_repeat Simple_repeat 1 262 0 833 171 0 27 chr13 45580084 45580230 -74164668 - MER44D DNA MER2_type -197 412 1 2133 116 0 49 chr13 45580560 45580887 -74164011 + AluSx SINE Alu 1 311 -1 799 232 57 38 chr13 45581268 45581531 -74163367 - LTR40b LTR ERVL -2 460 193 326 300 18 71 chr13 45581861 45582031 -74162867 + MLT1K LTR MaLR 347 507 -81 2266 171 19 102 chr13 45582090 45582656 -74162242 - MLT2B1 LTR ERVL -1 519 1 437 0 0 19 chr13 45583000 45583054 -74161844 + (GA)n Simple_repeat Simple_repeat 1 53 0 1973 106 3 78 chr13 45584514 45584835 -74160063 - AluSq SINE Alu -16 297 1 287 278 0 19 chr13 45584928 45585036 -74159862 + (TA)n Simple_repeat Simple_repeat 2 107 0 508 260 110 59 chr13 45585050 45585323 -74159575 - L1MC4 LINE L1 -143 7899 7613 2342 100 3 3 chr13 45585333 45585643 -74159255 - AluSq SINE Alu -3 310 1 39 22 0 0 chr13 45585702 45585748 -74159150 + AT_rich Low_complexity Low_complexity 1 46 0 265 307 88 44 chr13 45585862 45586067 -74158831 - L1MC4 LINE L1 -547 7495 7282 1952 149 0 19 chr13 45586485 45586800 -74158098 + AluJb SINE Alu 1 309 -3 2551 95 34 3 chr13 45588952 45589331 -74155567 - MER39B LTR ERV1 0 653 263 596 38 0 12 chr13 45589331 45589411 -74155487 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 3222 138 40 0 chr13 45589539 45590045 -74154853 - L1MC2 LINE L1 -288 6056 5531 426 278 103 64 chr13 45590191 45590349 -74154549 - MIR SINE MIR 0 262 91 2261 112 0 0 chr13 45590349 45590645 -74154253 + AluSx SINE Alu 1 296 -16 426 278 103 64 chr13 45590645 45590720 -74154178 - MIR SINE MIR -171 91 20 1372 174 56 62 chr13 45590821 45591148 -74153750 + LTR37A LTR ERV1 39 365 -61 2195 128 0 0 chr13 45591148 45591453 -74153445 - AluSx SINE Alu -7 305 1 1372 174 56 62 chr13 45591453 45591515 -74153383 + LTR37A LTR ERV1 365 426 0 1957 123 42 0 chr13 45591566 45591850 -74153048 + AluSx SINE Alu 5 300 -12 469 352 11 11 chr13 45592476 45592658 -74152240 - MIR3 SINE MIR -7 201 20 21 0 0 0 chr13 45593117 45593138 -74151760 + AT_rich Low_complexity Low_complexity 1 21 0 346 351 39 13 chr13 45594995 45595149 -74149749 + MIR3 SINE MIR 19 176 -32 202 311 104 37 chr13 45595989 45596124 -74148774 + L2 LINE L2 3121 3264 -8 25 75 0 0 chr13 45596359 45596412 -74148486 + AT_rich Low_complexity Low_complexity 1 53 0 453 237 20 33 chr13 45597566 45597718 -74147180 - MER103 DNA DNA -7 159 10 1914 164 32 18 chr13 45597828 45598170 -74146728 + MER7A DNA MER2_type 1 345 -1 2346 85 0 3 chr13 45598388 45598683 -74146215 - AluSc SINE Alu -15 294 1 1836 86 14 50 chr13 45598883 45599072 -74145826 - L1PB1 LINE L1 -2 6149 5972 2150 122 3 0 chr13 45599072 45599366 -74145532 - AluSx SINE Alu -17 295 1 1836 86 14 50 chr13 45599366 45599455 -74145443 - L1PB1 LINE L1 -179 5972 5881 2025 128 4 0 chr13 45600083 45600385 -74144513 + AluSx SINE Alu 1 303 0 1564 114 152 73 chr13 45600387 45600676 -74144222 + AluSq SINE Alu 1 312 -1 21 36 0 0 chr13 45600966 45600994 -74143904 + AT_rich Low_complexity Low_complexity 1 28 0 182 274 62 82 chr13 45601549 45601695 -74143203 - L2 LINE L2 -1 3312 3170 188 299 182 32 chr13 45603004 45603191 -74141707 + MIR SINE MIR 30 244 -18 21 36 0 0 chr13 45603871 45603899 -74140999 + GC_rich Low_complexity Low_complexity 1 28 0 225 65 0 0 chr13 45603981 45604012 -74140886 + (CCA)n Simple_repeat Simple_repeat 3 33 0 22 0 0 0 chr13 45604019 45604041 -74140857 + GC_rich Low_complexity Low_complexity 1 22 0 358 297 36 14 chr13 45607127 45607265 -74137633 - MIR SINE MIR -114 148 8 439 203 81 47 chr13 45607331 45607479 -74137419 - L2 LINE L2 -3 3310 3158 1615 142 44 22 chr13 45607933 45608068 -74136830 + AluJb SINE Alu 1 132 -177 2033 119 0 52 chr13 45608068 45608404 -74136494 + AluSx SINE Alu 1 312 0 1615 142 44 22 chr13 45608404 45608571 -74136327 + AluJb SINE Alu 132 309 0 1799 155 11 0 chr13 45608961 45609264 -74135634 + AluSx SINE Alu 1 306 0 21 0 0 0 chr13 45609696 45609717 -74135181 + AT_rich Low_complexity Low_complexity 1 21 0 1931 165 20 48 chr13 45612756 45613156 -74131742 - MLT1B LTR MaLR 0 390 2 701 261 17 11 chr13 45613868 45614048 -74130850 + MIR SINE MIR 3 183 -79 242 308 15 0 chr13 45614061 45614126 -74130772 - MIR SINE MIR 0 262 197 347 217 16 78 chr13 45614264 45614393 -74130505 - MIR3 SINE MIR -40 168 48 216 294 77 47 chr13 45615215 45615385 -74129513 + MIR SINE MIR 65 239 -23 565 199 232 0 chr13 45615486 45615667 -74129231 + MIR SINE MIR 7 229 -33 195 333 132 0 chr13 45615880 45615994 -74128904 - MIR3 SINE MIR -65 143 15 2068 125 7 0 chr13 45616037 45616317 -74128581 + AluSx SINE Alu 1 282 -30 396 59 0 0 chr13 45616320 45616371 -74128527 + (TAA)n Simple_repeat Simple_repeat 2 52 0 198 263 139 44 chr13 45617007 45617144 -74127754 - MIR SINE MIR -70 192 43 315 0 0 0 chr13 45618000 45618035 -74126863 + (TG)n Simple_repeat Simple_repeat 2 36 0 409 215 112 0 chr13 45618737 45618844 -74126054 - MER94 DNA DNA -15 119 1 569 222 99 47 chr13 45619181 45619386 -74125512 + L1ME2 LINE L1 5955 6177 -1 246 279 140 39 chr13 45619748 45619927 -74124971 - MIR SINE MIR -10 252 56 491 304 54 6 chr13 45620576 45620744 -74124154 - MIR SINE MIR -32 230 55 182 350 80 0 chr13 45620935 45621035 -74123863 - MIR SINE MIR -133 129 22 509 301 40 6 chr13 45622173 45622346 -74122552 + MIR SINE MIR 10 188 -74 312 120 0 0 chr13 45622388 45622438 -74122460 + (GA)n Simple_repeat Simple_repeat 1 50 0 715 261 81 0 chr13 45623407 45623618 -74121280 + MIR SINE MIR 34 261 -1 274 256 56 81 chr13 45623631 45623791 -74121107 + L2 LINE L2 3158 3313 0 4283 79 32 48 chr13 45623876 45624352 -74120546 + L1MA2 LINE L1 5635 6117 -187 198 0 0 0 chr13 45624352 45624374 -74120524 + (TA)n Simple_repeat Simple_repeat 2 23 0 1939 98 83 18 chr13 45624374 45624651 -74120247 - AluSx SINE Alu -17 295 1 4283 79 32 48 chr13 45624651 45624854 -74120044 + L1MA2 LINE L1 6115 6304 0 216 0 0 0 chr13 45625329 45625353 -74119545 + (T)n Simple_repeat Simple_repeat 1 24 0 315 0 0 0 chr13 45626017 45626052 -74118846 + (TG)n Simple_repeat Simple_repeat 2 36 0 1259 212 109 9 chr13 45627281 45627593 -74117305 - MLT1E1 LTR MaLR 0 654 375 2223 113 3 13 chr13 45627593 45627904 -74116994 - AluSq SINE Alu -5 308 1 1259 212 109 9 chr13 45627904 45628079 -74116819 - MLT1E1 LTR MaLR -279 375 57 488 306 77 24 chr13 45631972 45632220 -74112678 - MIR SINE MIR 0 262 2 2006 120 0 0 chr13 45632410 45632686 -74112212 + AluSx SINE Alu 37 312 0 1650 167 0 55 chr13 45632996 45633307 -74111591 - AluJb SINE Alu -18 294 1 1235 117 0 0 chr13 45634263 45634434 -74110464 - AluSg/x SINE Alu -8 304 134 531 216 169 7 chr13 45634815 45634963 -74109935 + MER5A DNA MER1_type 9 180 -9 2226 67 84 0 chr13 45635802 45636086 -74108812 + AluY SINE Alu 1 308 -3 1998 139 0 10 chr13 45636922 45637225 -74107673 - AluJb SINE Alu -12 300 1 23 0 0 0 chr13 45638495 45638518 -74106380 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 45638721 45638742 -74106156 + AT_rich Low_complexity Low_complexity 1 21 0 2303 98 0 10 chr13 45639103 45639409 -74105489 - AluSx SINE Alu -9 303 1 641 236 54 106 chr13 45639466 45639555 -74105343 - L1MC4 LINE L1 -124 7918 7826 1706 168 36 7 chr13 45639555 45639835 -74105063 - AluJo SINE Alu -24 288 1 641 236 54 106 chr13 45639835 45640100 -74104798 - L1MC4 LINE L1 -216 7826 7498 2140 138 0 0 chr13 45640100 45640405 -74104493 - AluSq SINE Alu -6 307 3 641 236 54 106 chr13 45640405 45640602 -74104296 - L1MC4 LINE L1 -544 7498 7292 1088 179 0 0 chr13 45641022 45641201 -74103697 + FRAM SINE Alu 1 176 0 237 132 0 0 chr13 45643770 45643808 -74101090 + (T)n Simple_repeat Simple_repeat 1 38 0 261 272 12 0 chr13 45644586 45644667 -74100231 - MIR SINE MIR -149 113 32 3020 200 9 47 chr13 45647527 45647866 -74097032 - MER82 DNA MER2_type 0 653 351 2339 98 0 0 chr13 45647866 45648161 -74096737 - AluSq SINE Alu -18 295 1 3020 200 9 47 chr13 45648161 45648496 -74096402 - MER82 DNA MER2_type -302 351 5 1275 95 0 0 chr13 45648503 45648661 -74096237 + AluSq SINE Alu 1 158 -155 22 35 0 0 chr13 45649006 45649035 -74095863 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 45649423 45649452 -74095446 + AT_rich Low_complexity Low_complexity 1 29 0 4060 141 42 20 chr13 45649769 45650455 -74094443 - L1MB2 LINE L1 0 6171 5471 207 167 50 67 chr13 45650685 45650745 -74094153 + L2 LINE L2 3255 3313 0 23 0 0 0 chr13 45650903 45650926 -74093972 + AT_rich Low_complexity Low_complexity 1 23 0 1171 69 0 7 chr13 45650964 45651109 -74093789 - AluSq/x SINE Alu -168 144 1 235 241 0 0 chr13 45651462 45651516 -74093382 + MER112 DNA MER1_type 1 54 -206 333 0 0 0 chr13 45651541 45651578 -74093320 + (CA)n Simple_repeat Simple_repeat 2 38 0 302 323 21 11 chr13 45652984 45653077 -74091821 + MIR SINE MIR 30 123 -85 507 272 80 46 chr13 45653317 45653556 -74091342 + MIR SINE MIR 16 262 0 1601 179 22 0 chr13 45653595 45653869 -74091029 + AluJb SINE Alu 1 280 -32 423 56 0 0 chr13 45653874 45653928 -74090970 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1726 147 44 4 chr13 45654607 45654879 -74090019 - AluJo SINE Alu -29 283 1 1116 119 38 16 chr13 45655001 45655186 -74089712 + MER53 DNA DNA 1 189 0 275 127 0 18 chr13 45656430 45656485 -74088413 + (TCC)n Simple_repeat Simple_repeat 2 55 0 671 289 17 0 chr13 45656810 45656983 -74087915 - MIR3 SINE MIR -13 195 20 279 0 0 0 chr13 45657071 45657102 -74087796 + (TG)n Simple_repeat Simple_repeat 2 32 0 811 191 122 69 chr13 45657456 45657479 -74087419 - MER74B LTR ERVL -57 565 545 1908 140 14 0 chr13 45657479 45657788 -74087110 - AluSx SINE Alu 0 314 2 811 191 122 69 chr13 45657788 45658082 -74086816 - MER74B LTR ERVL -77 545 230 252 254 0 0 chr13 45658120 45658175 -74086723 - MER74B LTR ERVL -565 57 3 368 139 42 0 chr13 45658499 45658571 -74086327 + CT-rich Low_complexity Low_complexity 5 79 0 302 300 46 23 chr13 45660528 45660658 -74084240 - L2 LINE L2 -4 3268 3136 22 35 0 0 chr13 45660658 45660687 -74084211 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr13 45661323 45661363 -74083535 + AT_rich Low_complexity Low_complexity 1 40 0 1845 95 0 46 chr13 45661451 45661736 -74083162 - L1PB1 LINE L1 -204 5947 5676 305 266 46 0 chr13 45662346 45662455 -74082443 + Charlie5 DNA MER1_type 10 123 -2489 1204 183 110 27 chr13 45662470 45662798 -74082100 + Charlie5 DNA MER1_type 2268 2622 0 678 113 0 106 chr13 45663018 45663160 -74081738 + L1PA7 LINE L1 6028 6154 0 2319 84 7 0 chr13 45664029 45664326 -74080572 + AluSc SINE Alu 1 299 -10 528 209 29 0 chr13 45664507 45664612 -74080286 - MER5B DNA MER1_type -6 172 65 1167 223 55 0 chr13 45664923 45665197 -74079701 - L1MA9 LINE L1 -36 6276 5988 2595 149 21 14 chr13 45666031 45666454 -74078444 - MSTB LTR MaLR 0 426 1 1649 149 110 65 chr13 45667623 45668052 -74076846 - LTR7 LTR ERV1 -2 448 1 505 261 61 61 chr13 45668168 45668348 -74076550 + MIR3 SINE MIR 3 182 -26 318 327 77 0 chr13 45668791 45668895 -74076003 - L2 LINE L2 -1 3271 3160 1765 127 6 100 chr13 45668939 45669279 -74075619 - Tigger3(Golem) DNA MER2_type -1 3028 2721 257 274 123 0 chr13 45669277 45669350 -74075548 - Tigger3(Golem) DNA MER2_type -2947 82 1 * 456 67 0 0 chr13 45669971 45670031 -74074867 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 2124 114 3 3 chr13 45670031 45670328 -74074570 - AluSx SINE Alu -15 297 1 186 118 0 0 chr13 45670650 45670684 -74074214 + (TTG)n Simple_repeat Simple_repeat 2 35 0 833 175 15 0 chr13 45671158 45671295 -74073603 + FRAM SINE Alu 22 160 -16 271 283 0 0 chr13 45674683 45674736 -74070162 + MIR SINE MIR 23 75 -187 493 101 56 45 chr13 45674866 45674955 -74069943 - L1MB4 LINE L1 0 6180 6091 397 230 78 84 chr13 45674957 45675077 -74069821 + MIR SINE MIR 66 186 -76 2127 138 0 3 chr13 45675077 45675375 -74069523 + AluSx SINE Alu 1 297 -15 397 230 78 84 chr13 45675375 45675445 -74069453 + MIR SINE MIR 186 255 -7 298 309 86 82 chr13 45676773 45677037 -74067861 + L2 LINE L2 2131 2393 -921 2539 57 3 0 chr13 45677037 45677335 -74067563 - AluSg SINE Alu -11 299 1 298 309 86 82 chr13 45677335 45677595 -74067303 + L2 LINE L2 2393 2657 -657 236 345 115 40 chr13 45677607 45677981 -74066917 + L2 LINE L2 2869 3270 -2 540 301 166 12 chr13 45678300 45678625 -74066273 + L2 LINE L2 1207 1581 -1733 1360 85 6 0 chr13 45678625 45678801 -74066097 - AluY SINE Alu -9 302 126 1347 45 0 0 chr13 45681207 45681362 -74063536 - L1PA5 LINE L1 0 6154 6000 1962 164 0 3 chr13 45681369 45681680 -74063218 - AluJo SINE Alu -2 310 1 269 214 36 0 chr13 45682756 45682810 -74062088 - MLT1G1 LTR MaLR -3 592 537 1713 128 28 92 chr13 45682810 45683130 -74061768 + MLT1A1 LTR MaLR 1 297 -68 1879 154 3 22 chr13 45683130 45683448 -74061450 - AluJb SINE Alu 0 312 1 1713 128 28 92 chr13 45683448 45683487 -74061411 + MLT1A1 LTR MaLR 297 337 -28 1535 157 119 72 chr13 45683774 45684202 -74060696 + LTR7 LTR ERV1 1 448 -2 188 316 95 63 chr13 45684528 45684623 -74060275 + MIR SINE MIR 1 98 -164 2063 106 0 65 chr13 45685853 45686175 -74058723 + AluSg SINE Alu 3 303 -7 1247 177 0 63 chr13 45687561 45687614 -74057284 - L1MB2 LINE L1 -3 6168 6113 2337 96 6 13 chr13 45687614 45687926 -74056972 - AluSx SINE Alu -2 310 1 1247 177 0 63 chr13 45687926 45688126 -74056772 - L1MB2 LINE L1 -58 6113 5931 2575 269 118 11 chr13 45688131 45689472 -74055426 + L2 LINE L2 1823 3307 -6 926 234 18 32 chr13 45691799 45692017 -74052881 - MIR SINE MIR -10 252 38 341 241 195 79 chr13 45692167 45692408 -74052490 - L2 LINE L2 -4 3309 3041 592 260 34 17 chr13 45693877 45694054 -74050844 + MIR SINE MIR 13 192 -70 383 296 121 15 chr13 45694388 45694520 -74050378 + MER5B DNA MER1_type 30 175 -3 279 307 113 20 chr13 45697101 45697251 -74047647 - MIR3 SINE MIR -12 196 33 21 57 0 0 chr13 45698043 45698078 -74046820 + AT_rich Low_complexity Low_complexity 1 35 0 404 217 17 58 chr13 45698085 45698205 -74046693 - L1MC4a LINE L1 -1898 5910 5796 424 235 181 0 chr13 45698329 45698387 -74046511 - L1MC4a LINE L1 -2037 5771 5725 2229 125 0 0 chr13 45698387 45698690 -74046208 + AluSx SINE Alu 1 303 -9 424 235 181 0 chr13 45698690 45698797 -74046101 - L1MC4a LINE L1 -2083 5725 5576 680 232 41 41 chr13 45698815 45699061 -74045837 - L1MC4a LINE L1 -2295 5513 5268 3136 119 45 0 chr13 45699455 45699943 -74044955 - MER1A DNA MER1_type 0 529 20 545 86 25 0 chr13 45700530 45700611 -74044287 + L1PA6 LINE L1 5802 5884 -270 1118 173 0 0 chr13 45701228 45701401 -74043497 + AluJb SINE Alu 126 298 -14 25 51 0 0 chr13 45702117 45702156 -74042742 + AT_rich Low_complexity Low_complexity 1 39 0 183 80 0 0 chr13 45702279 45702304 -74042594 + (A)n Simple_repeat Simple_repeat 1 25 0 2121 89 14 14 chr13 45702937 45703230 -74041668 + AluSq SINE Alu 1 293 -20 697 206 41 105 chr13 45703449 45703838 -74041060 + L1MC5 LINE L1 6695 7058 -903 279 0 0 0 chr13 45703841 45703872 -74041026 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 777 167 14 0 chr13 45703872 45704016 -74040882 - FRAM SINE Alu -18 148 3 1216 46 7 0 chr13 45704020 45704213 -74040685 - AluY SINE Alu 0 320 127 2573 55 0 0 chr13 45704218 45704529 -74040369 - AluY SINE Alu 0 311 1 1937 116 31 20 chr13 45705696 45706011 -74038887 + AluJb SINE Alu 1 312 0 317 134 0 45 chr13 45707272 45707339 -74037559 + (ATGGTG)n Simple_repeat Simple_repeat 5 68 0 199 217 22 0 chr13 45708773 45708819 -74036079 - L3 LINE CR1 -7 1570 1524 205 151 38 0 chr13 45709603 45709656 -74035242 + CT-rich Low_complexity Low_complexity 3 57 0 360 0 0 0 chr13 45710512 45710552 -74034346 + (TG)n Simple_repeat Simple_repeat 1 40 0 2262 145 23 16 chr13 45710687 45711074 -74033824 - MLT1B LTR MaLR 0 390 1 201 171 0 0 chr13 45714452 45714487 -74030411 + T-rich Low_complexity Low_complexity 1 35 0 3795 106 72 13 chr13 45714671 45715286 -74029612 - MER39B LTR ERV1 0 653 3 2222 121 0 0 chr13 45715541 45715848 -74029050 - AluSx SINE Alu -5 307 1 228 35 0 0 chr13 45718302 45718331 -74026567 + (TTCTG)n Simple_repeat Simple_repeat 4 32 0 198 94 0 0 chr13 45719597 45719629 -74025269 + L2 LINE L2 3281 3312 -1 1567 150 108 81 chr13 45720051 45720287 -74024611 - MSTB LTR MaLR -1 425 172 2359 92 0 0 chr13 45720287 45720582 -74024316 - AluSc SINE Alu -14 295 1 1567 150 108 81 chr13 45720582 45720752 -74024146 - MSTB LTR MaLR -254 172 8 947 161 169 4 chr13 45720813 45721055 -74023843 - L1ME3A LINE L1 -50 6120 5839 484 291 84 11 chr13 45721318 45721497 -74023401 - MIR SINE MIR 0 262 71 1288 83 0 22 chr13 45721558 45721738 -74023160 - AluSg/x SINE Alu -8 304 129 671 286 142 25 chr13 45721776 45722136 -74022762 - MLT1J1 LTR MaLR 0 446 45 295 321 101 0 chr13 45722141 45722250 -74022648 + MIR3 SINE MIR 87 206 -2 213 293 103 52 chr13 45723028 45723144 -74021754 + L2 LINE L2 3184 3305 -8 342 0 0 0 chr13 45724789 45724827 -74020071 + (CA)n Simple_repeat Simple_repeat 2 39 0 1717 175 11 0 chr13 45725381 45725667 -74019231 + AluJb SINE Alu 1 289 -23 2948 199 7 53 chr13 45725733 45726417 -74018481 + MER82 DNA MER2_type 1 653 0 2181 157 34 23 chr13 45727386 45727863 -74017035 - L1MB2 LINE L1 -4 6167 5686 854 220 86 10 chr13 45728421 45728630 -74016268 - MIR SINE MIR -6 256 32 364 222 196 39 chr13 45729126 45729279 -74015619 - MER5B DNA MER1_type -1 177 1 206 382 36 27 chr13 45730664 45730774 -74014124 - L2 LINE L2 -8 3264 3154 2258 122 0 0 chr13 45730811 45731123 -74013775 + AluSx SINE Alu 1 312 0 196 329 38 0 chr13 45731366 45731445 -74013453 - MER5A DNA MER1_type 0 189 108 430 215 93 0 chr13 45731910 45732017 -74012881 + MIR SINE MIR 85 201 -61 485 278 111 57 chr13 45732019 45732461 -74012437 + L1ME4a LINE L1 5531 5996 -125 249 280 251 5 chr13 45734746 45734953 -74009945 + MIR SINE MIR 3 260 -2 640 178 8 17 chr13 45735177 45735295 -74009603 - AluJo SINE Alu -176 136 20 22 70 0 0 chr13 45735306 45735349 -74009549 + AT_rich Low_complexity Low_complexity 1 43 0 1208 272 33 65 chr13 45735418 45736124 -74008774 - L1MC4 LINE L1 -92 7950 7268 449 293 49 8 chr13 45736378 45736501 -74008397 - L2 LINE L2 -1 3312 3185 2158 122 20 0 chr13 45736868 45737163 -74007735 - AluSq SINE Alu -12 301 1 1993 146 0 52 chr13 45738322 45738706 -74006192 - AluJb SINE Alu 0 367 1 545 302 102 53 chr13 45739096 45739349 -74005549 - L1M4 LINE L1 -3020 3126 2842 1736 179 3 13 chr13 45739349 45739656 -74005242 - AluJb SINE Alu -6 306 3 545 302 102 53 chr13 45739656 45739832 -74005066 - L1M4 LINE L1 -3304 2842 2676 243 0 0 0 chr13 45740041 45740068 -74004830 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2031 123 0 0 chr13 45740078 45740354 -74004544 - AluSx SINE Alu -36 276 1 2194 47 72 11 chr13 45740896 45741175 -74003723 - AluY SINE Alu -15 296 1 401 358 46 14 chr13 45742060 45742278 -74002620 + MIR SINE MIR 32 256 -6 21 36 0 0 chr13 45742649 45742677 -74002221 + AT_rich Low_complexity Low_complexity 1 28 0 1657 80 5 0 chr13 45742793 45742994 -74001904 + AluSg SINE Alu 1 202 -108 24 32 0 0 chr13 45744030 45744061 -74000837 + AT_rich Low_complexity Low_complexity 1 31 0 1593 140 10 143 chr13 45745112 45745512 -73999386 + MER7A DNA MER2_type 2 346 0 253 216 226 74 chr13 45745650 45745783 -73999115 - MIR SINE MIR -67 141 19 22 56 0 0 chr13 45745896 45745932 -73998966 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 45747141 45747162 -73997736 + AT_rich Low_complexity Low_complexity 1 21 0 366 155 0 0 chr13 45748234 45748305 -73996593 - L1ME3A LINE L1 -5 6165 6095 2029 37 0 4 chr13 45748305 45748551 -73996347 + L1PA5 LINE L1 5910 6154 0 385 232 101 7 chr13 45748629 45748767 -73996131 - L1ME4a LINE L1 0 6121 5971 33 0 0 0 chr13 45749670 45749703 -73995195 + AT_rich Low_complexity Low_complexity 1 33 0 204 299 104 0 chr13 45750754 45750831 -73994067 - L2 LINE L2 -38 3234 3150 183 318 47 9 chr13 45751686 45751793 -73993105 - L2 LINE L2 -291 2981 2871 406 346 96 30 chr13 45751861 45752313 -73992585 + L2 LINE L2 2779 3265 -7 3633 89 87 3 chr13 45752618 45753190 -73991708 - L1MC1 LINE L1 -9 6324 5705 309 274 20 89 chr13 45753652 45753798 -73991100 - MIR3 SINE MIR -14 194 59 1025 209 35 11 chr13 45753807 45754090 -73990808 - MER33 DNA MER1_type 0 324 35 2067 105 0 81 chr13 45754608 45754941 -73989957 - AluSx SINE Alu -6 306 1 30 0 0 0 chr13 45755000 45755030 -73989868 + AT_rich Low_complexity Low_complexity 1 30 0 528 305 126 0 chr13 45755519 45755742 -73989156 - MIR SINE MIR -11 251 1 1958 81 77 0 chr13 45756856 45757116 -73987782 + AluSg SINE Alu 1 280 -30 1833 179 3 10 chr13 45757632 45757939 -73986959 - AluJb SINE Alu -7 305 1 2019 89 0 62 chr13 45757987 45758279 -73986619 + AluSx SINE Alu 1 274 -38 185 0 40 0 chr13 45758286 45758311 -73986587 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 338 336 103 63 chr13 45761135 45761817 -73983081 - L2 LINE L2 -16 3256 2551 286 317 126 15 chr13 45762156 45762355 -73982543 + MIR SINE MIR 6 226 -36 201 222 0 0 chr13 45762968 45763004 -73981894 + polypurine Low_complexity Low_complexity 1 36 0 241 387 104 6 chr13 45764901 45765265 -73979633 + L2 LINE L2 2076 2475 -839 204 259 231 9 chr13 45765681 45765789 -73979109 - L2 LINE L2 -4 3309 3178 29 47 0 0 chr13 45768349 45768392 -73976506 + AT_rich Low_complexity Low_complexity 1 43 0 283 299 78 0 chr13 45771109 45771234 -73973664 - MIR SINE MIR -68 140 37 229 302 62 10 chr13 45772315 45772411 -73972487 - MIR SINE MIR -56 206 106 413 337 5 43 chr13 45772415 45772599 -73972299 - MER5B DNA MER1_type -1 177 1 344 345 0 18 chr13 45773061 45773171 -73971727 - L2 LINE L2 -15 3298 3191 2201 117 0 0 chr13 45773736 45774036 -73970862 + AluSx SINE Alu 2 301 -11 1918 145 0 0 chr13 45774124 45774406 -73970492 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr13 45775440 45775462 -73969436 + AT_rich Low_complexity Low_complexity 1 22 0 279 312 32 48 chr13 45777404 45777529 -73967369 + MIR SINE MIR 18 140 -122 1544 180 4 0 chr13 45777538 45777788 -73967110 + AluJo SINE Alu 1 251 -61 25 31 0 0 chr13 45777951 45777983 -73966915 + AT_rich Low_complexity Low_complexity 1 32 0 1201 179 0 5 chr13 45777985 45778186 -73966712 - AluSg/x SINE Alu 0 310 111 231 147 0 0 chr13 45778189 45778223 -73966675 - Alu SINE Alu -266 35 2 737 208 25 44 chr13 45778227 45778386 -73966512 - FRAM SINE Alu -10 156 1 3326 143 15 0 chr13 45778824 45779362 -73965536 + L1PA16 LINE L1 5604 6149 -17 505 260 72 22 chr13 45779416 45779597 -73965301 - L2 LINE L2 -1 3312 3123 2034 232 75 22 chr13 45780176 45781299 -73963599 + L1MDa LINE L1 -95 1286 -5140 655 190 11 49 chr13 45781408 45781623 -73963275 + L1MDa LINE L1 1147 1440 -4986 1024 99 0 0 chr13 45781661 45781792 -73963106 - AluSg/x SINE Alu -14 296 166 1141 133 90 5 chr13 45781792 45782003 -73962895 + L1MD1 LINE L1 6009 6237 -5 1906 177 3 3 chr13 45782062 45782373 -73962525 - AluSx SINE Alu -1 311 1 2049 115 31 0 chr13 45782386 45782672 -73962226 - AluSx SINE Alu -17 295 1 23 0 0 0 chr13 45783335 45783358 -73961540 + AT_rich Low_complexity Low_complexity 1 23 0 1655 132 28 68 chr13 45783412 45783737 -73961161 + AluJo SINE Alu 1 312 0 31 26 0 0 chr13 45785114 45785152 -73959746 + AT_rich Low_complexity Low_complexity 1 38 0 203 167 0 0 chr13 45785173 45785209 -73959689 + A-rich Low_complexity Low_complexity 4 39 0 2099 103 28 0 chr13 45785397 45785687 -73959211 - AluSx SINE Alu -14 298 1 185 264 14 0 chr13 45788131 45788203 -73956695 + (TA)n Simple_repeat Simple_repeat 1 73 0 392 213 56 69 chr13 45788224 45788440 -73956458 + L1ME4a LINE L1 5891 6103 -18 21 0 0 0 chr13 45788643 45788664 -73956234 + AT_rich Low_complexity Low_complexity 1 21 0 227 227 15 0 chr13 45789558 45789624 -73955274 + CT-rich Low_complexity Low_complexity 3 69 0 2322 108 0 13 chr13 45790391 45790705 -73954193 - AluSx SINE Alu -2 310 1 333 0 0 0 chr13 45790727 45790764 -73954134 + (TG)n Simple_repeat Simple_repeat 2 38 0 731 189 8 0 chr13 45791886 45792008 -73952890 - FLAM_C SINE Alu -10 123 1 253 309 126 80 chr13 45799590 45799696 -73945202 - L2 LINE L2 0 3272 3172 1002 218 23 5 chr13 45799696 45799916 -73944982 - MER58A DNA MER1_type 0 224 1 253 309 126 80 chr13 45799916 45800223 -73944675 - L2 LINE L2 -100 3172 2840 544 262 102 36 chr13 45800699 45800924 -73943974 + MIR SINE MIR 4 243 -19 332 294 41 104 chr13 45802252 45802350 -73942548 - L1M4 LINE L1 -798 5348 5245 1766 161 0 14 chr13 45802350 45802641 -73942257 - AluJo SINE Alu -15 297 11 332 294 41 104 chr13 45802641 45802957 -73941941 - L1M4 LINE L1 -901 5245 4960 1516 121 4 9 chr13 45803805 45804037 -73940861 + L1MA7 LINE L1 5802 6032 -259 1066 138 28 18 chr13 45804037 45804247 -73940651 + L1MA8 LINE L1 6072 6291 0 212 224 86 0 chr13 45805376 45805434 -73939464 + L3 LINE CR1 1339 1401 -176 28 0 0 0 chr13 45805731 45805759 -73939139 + AT_rich Low_complexity Low_complexity 1 28 0 24 77 0 0 chr13 45807367 45807419 -73937479 + AT_rich Low_complexity Low_complexity 1 52 0 288 0 0 0 chr13 45807694 45807726 -73937172 + (CA)n Simple_repeat Simple_repeat 1 32 0 187 173 39 0 chr13 45807763 45807815 -73937083 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 1914 158 39 6 chr13 45807851 45808187 -73936711 - MER7A DNA MER2_type -1 345 1 270 0 0 0 chr13 45808240 45808270 -73936628 + (CA)n Simple_repeat Simple_repeat 2 31 0 303 208 14 28 chr13 45808939 45809011 -73935887 + L2 LINE L2 3197 3267 -46 7362 39 0 2 chr13 45809978 45811245 -73933653 - L1PA4 LINE L1 0 6155 4890 422 274 32 54 chr13 45811592 45811778 -73933120 - LTR16C LTR ERVL -90 401 220 294 230 48 32 chr13 45811785 45811911 -73932987 + L1MEd LINE L1 41 168 -5951 2158 131 0 0 chr13 45812033 45812345 -73932553 + AluSx SINE Alu 1 312 0 570 173 30 18 chr13 45812350 45812518 -73932380 + GA-rich Low_complexity Low_complexity 2 171 0 977 198 71 0 chr13 45813802 45814014 -73930884 + MSTB1 LTR MaLR 2 228 -198 1428 122 61 0 chr13 45814117 45814347 -73930551 + MSTB1 LTR MaLR 189 432 0 965 150 5 78 chr13 45814379 45814572 -73930326 + AluJb SINE Alu 1 179 -133 252 0 0 0 chr13 45814591 45814619 -73930279 + (A)n Simple_repeat Simple_repeat 1 28 0 215 286 77 22 chr13 45815148 45815239 -73929659 + L2 LINE L2 1702 1797 -1517 529 292 25 0 chr13 45815246 45815366 -73929532 + L2 LINE L2 3191 3313 0 338 354 193 17 chr13 45815387 45816164 -73928734 + L2 LINE L2 1853 2766 -548 1707 160 24 3 chr13 45816633 45816921 -73927977 + MLT2B3 LTR ERVL 1 294 -260 1437 155 4 69 chr13 45817013 45817290 -73927608 + MLT2B3 LTR ERVL 294 552 -2 537 308 133 0 chr13 45817290 45817501 -73927397 - MIR SINE MIR -19 243 5 231 213 27 40 chr13 45817573 45817648 -73927250 - MIR SINE MIR -54 208 135 2112 101 42 0 chr13 45818028 45818315 -73926583 - AluSx SINE Alu -13 299 1 1710 162 17 30 chr13 45818556 45818858 -73926040 - AluJo SINE Alu -14 298 1 396 0 0 0 chr13 45819178 45819222 -73925676 + (CA)n Simple_repeat Simple_repeat 1 44 0 370 188 38 45 chr13 45819841 45819974 -73924924 - Charlie7 DNA MER1_type -54 2558 2427 231 217 157 24 chr13 45819958 45820041 -73924857 - Charlie7 DNA MER1_type -2511 101 8 * 676 272 171 9 chr13 45820809 45821369 -73923529 - L1M4 LINE L1 -1227 4919 4258 2396 97 0 0 chr13 45821739 45822047 -73922851 - AluSg SINE Alu -2 308 1 1916 134 22 0 chr13 45822299 45822574 -73922324 - AluSx SINE Alu -31 281 1 1055 278 107 51 chr13 45822790 45823720 -73921178 - L1ME3A LINE L1 -11 6159 5176 831 194 90 93 chr13 45824196 45824506 -73920392 + MLT2C1 LTR ERVL 24 332 -65 29 0 0 0 chr13 45824507 45824536 -73920362 + AT_rich Low_complexity Low_complexity 1 29 0 3056 41 0 23 chr13 45824536 45824926 -73919972 - L1PA5 LINE L1 -11 6143 5763 225 191 0 0 chr13 45824957 45825004 -73919894 + MLT2F LTR ERVL 607 653 -10 27 49 0 0 chr13 45825240 45825281 -73919617 + AT_rich Low_complexity Low_complexity 1 41 0 260 273 114 11 chr13 45825587 45825675 -73919223 + MIR SINE MIR 42 138 -70 299 292 22 22 chr13 45825723 45825812 -73919086 - L2 LINE L2 -42 3230 3142 4174 93 27 36 chr13 45827175 45827439 -73917459 - L1PA11 LINE L1 0 6174 5909 2218 87 21 0 chr13 45827439 45827726 -73917172 - AluY SINE Alu -18 293 1 4174 93 27 36 chr13 45827726 45828098 -73916800 - L1PA11 LINE L1 -265 5909 5544 234 238 88 38 chr13 45829542 45829622 -73915276 - L2 LINE L2 -4 3268 3185 22 0 0 0 chr13 45829965 45829987 -73914911 + AT_rich Low_complexity Low_complexity 1 22 0 565 258 33 39 chr13 45831207 45831389 -73913509 + MIR SINE MIR 32 212 -50 21 0 0 0 chr13 45831549 45831570 -73913328 + AT_rich Low_complexity Low_complexity 1 21 0 846 147 6 38 chr13 45834118 45834275 -73910623 + MER46A DNA MER2_type 1 152 -84 21 36 0 0 chr13 45834343 45834371 -73910527 + AT_rich Low_complexity Low_complexity 1 28 0 354 66 75 9 chr13 45834450 45834556 -73910342 + (TA)n Simple_repeat Simple_repeat 2 114 0 477 290 75 28 chr13 45836557 45836812 -73908086 + L1ME LINE L1 5552 5818 -303 551 266 81 12 chr13 45837637 45837810 -73907088 + MLT1I LTR MaLR 18 202 -207 234 279 154 0 chr13 45838141 45838342 -73906556 - L1M4 LINE L1 -1532 4614 4383 249 239 62 80 chr13 45838737 45838850 -73906048 + MIR SINE MIR 98 208 -54 1308 170 0 0 chr13 45839122 45839340 -73905558 + L1PA16 LINE L1 5940 6157 -9 442 286 84 0 chr13 45839578 45839756 -73905142 - MER46C DNA MER2_type -19 319 127 665 161 34 0 chr13 45840032 45840191 -73904707 - L1M4 LINE L1 -401 5777 5610 376 229 236 14 chr13 45840700 45840844 -73904054 + MIR3 SINE MIR 30 205 -3 754 234 130 29 chr13 45842571 45842947 -73901951 - HAL1 LINE L1 -69 2438 2025 311 148 33 0 chr13 45843272 45843333 -73901565 + L1MB1 LINE L1 6105 6167 -1 675 216 111 33 chr13 45843669 45843850 -73901048 + MER3 DNA MER1_type 1 195 -14 1525 228 172 27 chr13 45843895 45844559 -73900339 - HAL1 LINE L1 -690 1817 1046 2032 114 0 84 chr13 45844559 45844891 -73900007 - AluSq SINE Alu -9 304 1 1525 228 172 27 chr13 45844891 45844923 -73899975 - HAL1 LINE L1 -1461 1046 1020 882 288 97 4 chr13 45844974 45845241 -73899657 - HAL1 LINE L1 -1626 881 590 1227 276 100 32 chr13 45845243 45845773 -73899125 - HAL1 LINE L1 -1941 566 1 327 217 29 0 chr13 45847260 45847329 -73897569 - MIR SINE MIR -190 72 2 21 36 0 0 chr13 45847570 45847598 -73897300 + AT_rich Low_complexity Low_complexity 1 28 0 246 32 0 0 chr13 45848908 45848939 -73895959 + (CAA)n Simple_repeat Simple_repeat 2 32 0 810 214 20 25 chr13 45849080 45849276 -73895622 - AluJo SINE Alu -12 300 106 428 118 26 0 chr13 45850120 45850196 -73894702 - L1MB2 LINE L1 -7 6164 6087 1167 142 55 18 chr13 45850491 45850710 -73894188 - AluJb SINE Alu -5 307 81 22 0 0 0 chr13 45850770 45850792 -73894106 + AT_rich Low_complexity Low_complexity 1 22 0 202 253 38 38 chr13 45850799 45850878 -73894020 + L2 LINE L2 2770 2848 -466 778 241 65 28 chr13 45850957 45851173 -73893725 + MIR SINE MIR 9 232 -30 241 242 15 0 chr13 45852705 45852771 -73892127 + MER45A DNA AcHobo 104 170 -8 26 50 0 0 chr13 45853294 45853334 -73891564 + AT_rich Low_complexity Low_complexity 1 40 0 1248 220 16 35 chr13 45853610 45853923 -73890975 - MLT1A1 LTR MaLR -58 307 1 1069 147 17 97 chr13 45854036 45854274 -73890624 - MER20 DNA MER1_type 0 219 1 2093 139 0 0 chr13 45854679 45854980 -73889918 - AluJo SINE Alu 0 301 1 441 0 0 0 chr13 45855964 45856013 -73888885 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 1965 180 12 0 chr13 45856013 45856357 -73888541 - MER7A DNA MER2_type 0 346 1 198 143 0 77 chr13 45856379 45856423 -73888475 - L2 LINE L2 -15 3298 3219 389 330 42 50 chr13 45856475 45856736 -73888162 + L2 LINE L2 2841 3099 -173 791 188 3 6 chr13 45856884 45857173 -73887725 + MLT1A1 LTR MaLR 1 365 0 599 206 143 71 chr13 45857676 45858055 -73886843 - MLT1H1 LTR MaLR 0 555 150 1700 161 93 19 chr13 45858061 45858772 -73886126 - MER21A LTR ERV1 -6 925 1 380 264 16 32 chr13 45858772 45858896 -73886002 - MLT1H1 LTR MaLR -404 151 37 277 151 2 17 chr13 45858952 45859019 -73885879 - L1MC1 LINE L1 -9 6324 6266 339 160 0 46 chr13 45859039 45859126 -73885772 - L1MC1 LINE L1 -302 5819 5752 1809 219 147 6 chr13 45859139 45859641 -73885257 - MLT1G LTR MaLR -17 573 1 258 234 44 102 chr13 45859647 45859704 -73885194 - L1MC1 LINE L1 -2059 5749 5690 2219 102 159 8 chr13 45859704 45860076 -73884822 + MSTA LTR MaLR 1 428 0 258 234 44 102 chr13 45860076 45860155 -73884743 - L1MC1 LINE L1 -2118 5690 5621 287 328 0 0 chr13 45860168 45860287 -73884611 - L1MC1 LINE L1 -470 5651 5533 2347 114 0 0 chr13 45860350 45860656 -73884242 - AluSg SINE Alu -2 308 3 2290 88 3 0 chr13 45860660 45860943 -73883955 - AluSq SINE Alu -29 284 1 266 274 14 0 chr13 45862201 45862274 -73882624 + AluYa8 SINE Alu 131 204 -96 210 37 0 0 chr13 45864133 45864160 -73880738 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 512 259 119 49 chr13 45864353 45864697 -73880201 - L1ME4a LINE L1 -11 6110 5743 511 201 34 20 chr13 45864745 45864894 -73880004 - L1MC5 LINE L1 -101 7860 7710 411 286 28 11 chr13 45865062 45865259 -73879639 - L1MEc LINE L1 -5307 1721 1375 468 325 52 11 chr13 45865651 45865919 -73878979 - L1MEc LINE L1 -5989 1149 871 1278 225 66 16 chr13 45866041 45866543 -73878355 - L1ME1 LINE L1 -5 6161 5506 21 0 0 0 chr13 45866883 45866904 -73877994 + AT_rich Low_complexity Low_complexity 1 21 0 1459 277 80 22 chr13 45867150 45867875 -73877023 + L1MC4a LINE L1 5260 6026 -1782 316 278 19 0 chr13 45868688 45868796 -73876102 + L1M4 LINE L1 4549 4658 -1488 3469 174 27 6 chr13 45869498 45870019 -73874879 - LTR51 LTR ERV1 0 671 132 180 0 0 0 chr13 45870019 45870039 -73874859 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3469 174 27 6 chr13 45870039 45870174 -73874724 - LTR51 LTR ERV1 -539 132 1 228 59 0 0 chr13 45870507 45870541 -73874357 - MLT1D LTR MaLR 0 626 593 4449 135 88 40 chr13 45870542 45871610 -73873288 + MER52C LTR ERV1 1 1278 0 677 171 16 0 chr13 45871610 45871732 -73873166 - MLT1D LTR MaLR -34 471 348 841 261 193 20 chr13 45871733 45872127 -73872771 - L2 LINE L2 -381 2933 2472 279 78 47 31 chr13 45872145 45872209 -73872689 + GA-rich Low_complexity Low_complexity 5 69 0 558 241 0 0 chr13 45872757 45872902 -73871996 + (TA)n Simple_repeat Simple_repeat 2 146 0 359 338 48 28 chr13 45872962 45873107 -73871791 + L2 LINE L2 3125 3272 0 352 315 19 49 chr13 45873137 45873299 -73871599 + MER5A DNA MER1_type 4 160 -29 205 247 68 123 chr13 45873172 45873334 -73871564 - MER5A DNA MER1_type -27 162 10 * 263 253 40 0 chr13 45874604 45874679 -73870219 + MER103 DNA DNA 43 120 -46 941 176 0 35 chr13 45874699 45874898 -73870000 - L1MA9 LINE L1 0 6312 6121 362 301 158 5 chr13 45875185 45875394 -73869504 - MIR SINE MIR -2 260 20 312 27 0 0 chr13 45876030 45876067 -73868831 + (TG)n Simple_repeat Simple_repeat 2 38 0 496 268 163 21 chr13 45877448 45877658 -73867240 + MIR SINE MIR 15 249 -13 195 170 0 0 chr13 45877690 45877737 -73867161 + (TTG)n Simple_repeat Simple_repeat 1 47 0 618 235 8 15 chr13 45877749 45877881 -73867017 + MER58A DNA MER1_type 1 131 0 229 250 0 0 chr13 45877881 45877930 -73866968 + MER58A DNA MER1_type 172 220 -4 185 260 228 63 chr13 45880353 45880480 -73864418 - MIR3 SINE MIR -23 185 38 2271 101 0 7 chr13 45880599 45880905 -73863993 + AluSg SINE Alu 1 304 -6 298 354 0 0 chr13 45881729 45881825 -73863073 - MIR SINE MIR -117 145 50 661 313 48 10 chr13 45881890 45882098 -73862800 + MIR SINE MIR 31 246 -16 2041 102 0 3 chr13 45884102 45884415 -73860483 - L1P3 LINE L1 -503 5651 5340 309 295 13 0 chr13 45884415 45884493 -73860405 - MIR SINE MIR -182 80 2 27 0 0 0 chr13 45884629 45884656 -73860242 + AT_rich Low_complexity Low_complexity 1 27 0 471 261 35 26 chr13 45884746 45884861 -73860037 - L2 LINE L2 0 3313 3198 1721 158 10 43 chr13 45884861 45885165 -73859733 - AluJo SINE Alu -7 305 12 293 224 92 92 chr13 45885230 45885404 -73859494 - MIR SINE MIR -56 206 33 2462 49 0 3 chr13 45885701 45886005 -73858893 + AluY SINE Alu 1 303 -8 192 40 0 0 chr13 45886846 45886871 -73858027 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1181 193 5 23 chr13 45886871 45887089 -73857809 - AluJb SINE Alu -32 280 67 2141 264 39 62 chr13 45887106 45888480 -73856418 - L1MEc LINE L1 -4100 2296 955 233 111 67 0 chr13 45888654 45888699 -73856199 - L1MC5 LINE L1 -311 7650 7603 303 352 88 11 chr13 45890049 45890231 -73854667 + MIR SINE MIR 41 236 -26 357 24 0 0 chr13 45890766 45890808 -73854090 + (CA)n Simple_repeat Simple_repeat 2 43 0 349 384 0 0 chr13 45892345 45892457 -73852441 - MIR SINE MIR -63 145 34 2165 112 41 22 chr13 45892677 45893044 -73851854 + THE1C LTR MaLR 1 374 -1 423 261 11 0 chr13 45893249 45893337 -73851561 - MER5B DNA MER1_type -1 177 89 409 214 9 9 chr13 45893797 45893909 -73850989 + L1MA7 LINE L1 6178 6289 -2 2960 180 22 2 chr13 45894660 45895199 -73849699 + MER44D DNA MER2_type 1 605 0 421 259 118 15 chr13 45896492 45896627 -73848271 + MIR SINE MIR 3 151 -111 253 253 36 0 chr13 45896823 45896906 -73847992 - L1MC5 LINE L1 -36 7925 7840 204 40 0 0 chr13 45897441 45897466 -73847432 + (A)n Simple_repeat Simple_repeat 1 25 0 456 215 37 0 chr13 45897525 45897632 -73847266 - Charlie1b DNA MER1_type -319 204 94 1083 143 63 49 chr13 45897636 45897859 -73847039 + MER7A DNA MER2_type 2 225 -121 199 283 111 30 chr13 45897951 45898050 -73846848 + MIR SINE MIR 86 192 -70 252 302 0 0 chr13 45898841 45898904 -73845994 - LTR67 LTR ERVL -390 167 105 228 136 0 45 chr13 45899326 45899370 -73845528 - Charlie8 DNA MER1_type -2342 75 34 420 307 95 5 chr13 45900298 45900487 -73844411 - MIR SINE MIR -8 254 49 807 290 137 44 chr13 45900806 45901738 -73843160 + L2 LINE L2 2283 3312 -1 902 253 63 66 chr13 45902077 45902334 -73842564 - MIR SINE MIR -10 252 2 1525 216 34 78 chr13 45903588 45904116 -73840782 + MLT1D LTR MaLR 1 505 0 345 255 43 80 chr13 45904554 45904742 -73840156 - L1M4 LINE L1 -1476 4670 4490 590 226 67 6 chr13 45905232 45905396 -73839502 - MER5B DNA MER1_type 0 178 5 1705 175 91 32 chr13 45906601 45907042 -73837856 + MLT1C LTR MaLR 1 467 0 21 57 0 0 chr13 45907536 45907571 -73837327 + AT_rich Low_complexity Low_complexity 1 35 0 388 310 81 83 chr13 45908550 45908744 -73836154 - L2 LINE L2 0 3272 3078 1742 199 11 32 chr13 45908744 45908817 -73836081 - MLT1A1 LTR MaLR -2 363 290 2220 115 3 0 chr13 45908817 45909113 -73835785 + AluSc SINE Alu 1 297 -12 1742 199 11 32 chr13 45909113 45909410 -73835488 - MLT1A1 LTR MaLR -75 290 1 388 310 81 83 chr13 45909410 45909563 -73835335 - L2 LINE L2 -194 3078 2926 429 329 176 16 chr13 45909593 45910082 -73834816 - L2 LINE L2 -469 2845 2279 282 372 115 9 chr13 45910307 45910638 -73834260 - L2 LINE L2 -549 2765 2400 322 335 100 30 chr13 45911032 45911237 -73833661 + L2 LINE L2 2984 3218 -95 2301 100 108 8 chr13 45911237 45911626 -73833272 + MSTA LTR MaLR 1 428 0 322 335 100 30 chr13 45911626 45911721 -73833177 + L2 LINE L2 3218 3305 -8 2017 133 6 22 chr13 45915137 45915454 -73829444 + AluJo SINE Alu 1 312 0 4866 74 50 9 chr13 45915461 45916201 -73828697 + L1PA13 LINE L1 5375 6144 -19 2463 184 64 14 chr13 45916213 45916788 -73828110 + MER67C LTR ERV1 106 709 -1 666 227 66 10 chr13 45917358 45917556 -73827342 + MER3 DNA MER1_type 1 209 0 284 342 42 8 chr13 45918255 45918375 -73826523 + MIR SINE MIR 9 132 -130 712 263 115 48 chr13 45918378 45918542 -73826356 - L2 LINE L2 -3 3310 3158 2179 104 3 0 chr13 45918542 45918829 -73826069 + AluSq SINE Alu 1 288 -25 712 263 115 48 chr13 45918829 45918995 -73825903 - L2 LINE L2 -155 3158 2958 1008 231 140 20 chr13 45919340 45919690 -73825208 + LTR40b LTR ERVL 71 462 0 3610 179 61 16 chr13 45920836 45921876 -73823022 + L1MB4 LINE L1 5093 6177 -3 335 306 100 19 chr13 45922128 45922288 -73822610 + L1ME4a LINE L1 5756 5928 -193 873 90 135 0 chr13 45924701 45924834 -73820064 - AluSp SINE Alu -26 287 137 239 128 0 0 chr13 45925159 45925206 -73819692 - Charlie5 DNA MER1_type -121 2491 2445 333 0 0 0 chr13 45925225 45925262 -73819636 + (TTA)n Simple_repeat Simple_repeat 3 39 0 2361 39 3 0 chr13 45925262 45925545 -73819353 - L1PA3 LINE L1 -18 6137 5854 203 333 13 0 chr13 45926192 45926270 -73818628 + CT-rich Low_complexity Low_complexity 2 80 0 28 0 0 0 chr13 45927277 45927305 -73817593 + AT_rich Low_complexity Low_complexity 1 28 0 210 369 8 25 chr13 45927948 45928070 -73816828 + L2 LINE L2 2941 3060 -212 180 0 0 0 chr13 45928183 45928203 -73816695 + (TA)n Simple_repeat Simple_repeat 2 21 0 2459 65 0 23 chr13 45928203 45928513 -73816385 - AluY SINE Alu -8 303 1 1982 160 3 0 chr13 45931523 45931817 -73813081 + AluJb SINE Alu 3 297 -15 2240 115 0 0 chr13 45932354 45932659 -73812239 + AluSx SINE Alu 1 305 -7 409 296 210 18 chr13 45934157 45934495 -73810403 + L1M4 LINE L1 4860 5262 -884 760 232 18 0 chr13 45934691 45934855 -73810043 - MIR SINE MIR -84 178 12 400 75 0 0 chr13 45935961 45936014 -73808884 + AluY SINE Alu 1 53 -257 565 244 15 0 chr13 45936016 45936151 -73808747 - Tigger7 DNA MER2_type -596 137 1 1854 119 0 0 chr13 45936225 45936485 -73808413 + AluY SINE Alu 47 306 -5 217 238 0 0 chr13 45936595 45936637 -73808261 + (TATG)n Simple_repeat Simple_repeat 3 44 0 829 188 18 6 chr13 45936761 45936926 -73807972 - Tigger7 DNA MER2_type 0 2487 2321 1404 234 13 0 chr13 45936944 45937251 -73807647 - Tigger7 DNA MER2_type -2166 321 11 485 309 109 45 chr13 45937400 45937776 -73807122 - L1MC/D LINE L1 -2154 5654 5255 2482 56 0 13 chr13 45938935 45939238 -73805660 + AluY SINE Alu 1 299 -12 348 289 62 62 chr13 45939392 45939617 -73805281 + L1MEd LINE L1 937 1161 -5044 1918 69 35 0 chr13 45939622 45939882 -73805016 + L1PA11 LINE L1 5903 6171 -3 377 295 60 44 chr13 45939932 45940345 -73804553 + L1MEd LINE L1 1229 1648 -4748 627 234 151 26 chr13 45940544 45941108 -73803790 + L1MEd LINE L1 1940 2535 -3680 2239 85 3 0 chr13 45941863 45942146 -73802752 + AluSp SINE Alu 5 288 -25 249 167 372 26 chr13 45942636 45942714 -73802184 + MER5B DNA MER1_type 1 105 -73 219 400 83 0 chr13 45942848 45942993 -73801905 + MIR SINE MIR 18 172 -63 308 290 11 21 chr13 45943101 45943194 -73801704 + MIR SINE MIR 57 148 -114 765 216 33 22 chr13 45945064 45945245 -73799653 - MER5A DNA MER1_type -6 183 1 535 143 29 149 chr13 45945254 45945429 -73799469 + MER5B DNA MER1_type 2 155 -23 629 336 73 13 chr13 45950007 45950245 -73794653 + MIR SINE MIR 1 254 -8 562 261 122 21 chr13 45950559 45950747 -73794151 + MIR SINE MIR 56 262 0 282 184 356 0 chr13 45950854 45950941 -73793957 + L2 LINE L2 3196 3313 0 765 296 79 10 chr13 45951690 45952097 -73792801 + LTR16A LTR ERVL 16 449 -1 454 250 8 8 chr13 45952536 45952664 -73792234 - MER103 DNA DNA -1 165 38 524 255 7 0 chr13 45952713 45952862 -73792036 - L1ME2 LINE L1 -7 6157 6008 306 292 115 0 chr13 45953439 45953535 -73791363 - L2 LINE L2 0 3313 3207 * 1346 261 77 11 chr13 45953526 45953979 -73790919 - L2 LINE L2 -985 2329 1847 1815 280 77 20 chr13 45953980 45954641 -73790257 - L2 LINE L2 -641 2673 1975 28 48 0 0 chr13 45954900 45954942 -73789956 + AT_rich Low_complexity Low_complexity 1 42 0 485 294 132 51 chr13 45955050 45955482 -73789416 - MLT1K LTR MaLR 0 588 122 224 292 69 42 chr13 45957337 45957481 -73787417 + L3 LINE CR1 1424 1571 -6 21 36 0 0 chr13 45957653 45957681 -73787217 + AT_rich Low_complexity Low_complexity 1 28 0 226 204 0 0 chr13 45957832 45957876 -73787022 - L1M1 LINE L1 -739 5561 5518 1047 271 68 39 chr13 45958448 45959020 -73785878 - HAL1b LINE L1 -512 836 248 1891 149 7 3 chr13 45959091 45959380 -73785518 - AluSx SINE Alu -22 290 1 201 208 21 0 chr13 45959818 45959866 -73785032 + T-rich Low_complexity Low_complexity 1 49 0 198 71 0 0 chr13 45959947 45959975 -73784923 + (TG)n Simple_repeat Simple_repeat 1 28 0 807 181 96 11 chr13 45959976 45960153 -73784745 - L1PB4 LINE L1 -1 6155 5964 2339 112 3 0 chr13 45960668 45961007 -73783891 - L1PB3 LINE L1 -3 6151 5812 783 273 32 9 chr13 45961391 45961607 -73783291 + MER58A DNA MER1_type 2 222 -2 189 318 57 57 chr13 45963050 45963138 -73781760 - MIR SINE MIR -19 243 156 1871 190 77 31 chr13 45963360 45963882 -73781016 - L1ME3A LINE L1 -1 6169 5624 237 235 18 127 chr13 45963945 45964026 -73780872 + MER5B DNA MER1_type 31 87 -91 1811 194 132 14 chr13 45964026 45964459 -73780439 - MER66B LTR ERV1 0 486 3 237 235 18 127 chr13 45964459 45964543 -73780355 + MER5B DNA MER1_type 87 178 0 3065 29 0 13 chr13 45964680 45965054 -73779844 - L1PA4 LINE L1 -2 6153 5785 422 276 152 0 chr13 45965414 45965559 -73779339 + MIR SINE MIR 84 250 -12 1048 209 0 15 chr13 45966168 45966369 -73778529 - AluJo SINE Alu -32 280 83 2651 142 85 6 chr13 45967323 45967843 -73777055 - L1MC1 LINE L1 0 6333 5773 2243 228 83 40 chr13 45967874 45968911 -73775987 - L1MDa LINE L1 -1889 4651 3571 * 4970 165 35 13 chr13 45968904 45970278 -73774620 - L1PA16 LINE L1 0 6166 4752 2303 88 0 26 chr13 45970278 45970586 -73774312 - AluY SINE Alu -11 300 1 4970 165 35 13 chr13 45970586 45970872 -73774026 - L1PA16 LINE L1 -1414 4752 4474 4884 217 21 49 chr13 45970846 45972473 -73772425 - L1MDa LINE L1 -2385 4155 2574 * 2387 84 0 10 chr13 45972473 45972783 -73772115 - AluY SINE Alu -4 307 1 650 156 66 25 chr13 45972802 45972924 -73771974 + Charlie3 DNA MER1_type 1 127 -2583 478 181 71 0 chr13 45972926 45973081 -73771817 - L1MDa LINE L1 -3949 2591 2426 318 186 0 0 chr13 45973081 45973140 -73771758 - AluJb SINE Alu -4 297 239 * 331 125 0 111 chr13 45973139 45973211 -73771687 - AluJb SINE Alu -155 147 84 1303 161 99 3 chr13 45973211 45973534 -73771364 - L1MDa LINE L1 -4106 2434 2081 1202 244 32 21 chr13 45973598 45974029 -73770869 - L1MDa LINE L1 -3126 3414 2979 5578 200 109 61 chr13 45974032 45975081 -73769817 - L1MDa LINE L1 -4527 2013 831 1930 129 60 60 chr13 45975081 45975445 -73769453 + THE1B LTR MaLR 1 364 0 5578 200 109 61 chr13 45975445 45976299 -73768599 - L1MDa LINE L1 -5709 831 19 2222 113 12 134 chr13 45976514 45977020 -73767878 + MLT2A1 LTR ERVL 1 444 0 24 77 0 0 chr13 45977184 45977236 -73767662 + AT_rich Low_complexity Low_complexity 1 52 0 2707 279 130 32 chr13 45977624 45979212 -73765686 - L2 LINE L2 -2 3311 1564 182 173 0 19 chr13 45979235 45979287 -73765611 + A-rich Low_complexity Low_complexity 2 52 0 2099 127 3 3 chr13 45979598 45979897 -73765001 + AluSg SINE Alu 1 299 -11 400 262 10 0 chr13 45980086 45980189 -73764709 + MLT1K LTR MaLR 484 587 -1 21 0 0 0 chr13 45980206 45980227 -73764671 + AT_rich Low_complexity Low_complexity 1 21 0 2013 107 64 0 chr13 45980278 45980559 -73764339 + AluSx SINE Alu 5 303 -9 776 240 6 6 chr13 45981582 45981761 -73763137 + MLT1A2 LTR MaLR 194 372 -2 795 251 122 43 chr13 45981767 45982161 -73762737 - L1MDb LINE L1 -5212 1197 773 4231 174 51 10 chr13 45982257 45983422 -73761476 - L1MB1 LINE L1 -1 6167 4951 816 237 61 5 chr13 45983827 45984025 -73760873 - MER58A DNA MER1_type -15 209 1 1778 110 15 157 chr13 45984119 45984520 -73760378 - LTR14B LTR ERVK 0 608 1 216 271 0 34 chr13 45985498 45985557 -73759341 + GA-rich Low_complexity Low_complexity 4 60 0 30 0 0 0 chr13 45985597 45985627 -73759271 + AT_rich Low_complexity Low_complexity 1 30 0 245 127 18 55 chr13 45985631 45985686 -73759212 - MER4D LTR ERV1 0 903 851 15796 129 53 138 chr13 45985688 45986813 -73758085 + L1MA3 LINE L1 17 1237 -6328 4221 137 19 88 chr13 45986813 45987696 -73757202 - LTR12 LTR ERV1 0 826 5 15796 129 53 138 chr13 45987696 45989589 -73755309 + L1MA3 LINE L1 1237 3291 -4274 180 0 0 0 chr13 45989589 45989609 -73755289 + (TG)n Simple_repeat Simple_repeat 1 20 0 15796 129 53 138 chr13 45989609 45990686 -73754212 + L1MA3 LINE L1 3291 3695 -3870 2418 73 0 7 chr13 45990686 45990986 -73753912 + AluY SINE Alu 1 298 -13 15796 129 53 138 chr13 45990986 45991439 -73753459 + L1MA3 LINE L1 3695 4185 -3380 1311 114 0 114 chr13 45991439 45991667 -73753231 + AluSg/x SINE Alu 82 283 -29 6509 177 30 48 chr13 45991692 45993352 -73751546 + L1MA3 LINE L1 4195 5824 -1741 541 182 91 0 chr13 45993388 45993509 -73751389 + L1MA3 LINE L1 7311 7442 -282 6798 57 11 0 chr13 45993530 45994927 -73749971 + L1PA7 LINE L1 4737 6152 -2 1209 147 56 4 chr13 45994981 45995232 -73749666 + L1MA3 LINE L1 7461 7724 0 2981 131 25 21 chr13 45995256 45995548 -73749350 + MER75 DNA T2_type 1 290 -224 1987 144 39 36 chr13 45995548 45995909 -73748989 - THE1B LTR MaLR 0 364 3 10612 104 24 37 chr13 45995911 45997511 -73747387 - THE1B-int LTR MaLR 0 1580 2 1985 128 60 28 chr13 45997512 45997865 -73747033 - THE1B LTR MaLR 0 364 1 2981 131 25 21 chr13 45997865 45998078 -73746820 + MER75 DNA T2_type 289 513 -1 1196 246 24 27 chr13 45998085 45998196 -73746702 - MER4D LTR ERV1 -36 867 757 3372 126 73 9 chr13 45998196 45998769 -73746129 + MER4B LTR ERV1 1 610 0 1196 246 24 27 chr13 45998769 45998987 -73745911 - MER4D LTR ERV1 -146 757 539 1875 195 73 47 chr13 45998990 45999686 -73745212 - LTR49 LTR ERV1 -23 572 20 1004 273 16 4 chr13 45999776 46000025 -73744873 + MIR SINE MIR 6 257 -5 1739 258 60 22 chr13 46000653 46001263 -73743635 + MER21B LTR ERV1 126 855 -76 253 297 167 36 chr13 46001543 46001681 -73743217 - L2 LINE L2 0 3313 3158 2239 120 13 0 chr13 46003419 46003728 -73741170 + AluSq SINE Alu 1 313 0 1344 278 35 51 chr13 46003761 46004605 -73740293 + L1MC4 LINE L1 7212 8042 0 24 0 0 0 chr13 46004671 46004695 -73740203 + AT_rich Low_complexity Low_complexity 1 24 0 2308 101 10 0 chr13 46005372 46005679 -73739219 + AluSg SINE Alu 1 310 0 241 215 69 169 chr13 46005787 46005917 -73738981 - L1ME3 LINE L1 -88 6074 5958 383 149 14 0 chr13 46005997 46006071 -73738827 + (TA)n Simple_repeat Simple_repeat 1 75 0 1445 239 114 42 chr13 46006121 46006952 -73737946 - L1MC5 LINE L1 -438 7523 6633 276 331 122 9 chr13 46007315 46007750 -73737148 - HAL1b LINE L1 -588 760 277 2998 166 40 26 chr13 46007993 46008612 -73736286 - L1MC1 LINE L1 0 6333 5706 1252 127 15 0 chr13 46008619 46008824 -73736074 - L1MC1 LINE L1 -693 5640 5433 604 194 219 12 chr13 46008842 46009002 -73735896 - 7SK RNA RNA 0 193 1 308 259 35 0 chr13 46009284 46009369 -73735529 + MIR SINE MIR 66 153 -109 2100 121 0 0 chr13 46010370 46010652 -73734246 + AluSx SINE Alu 1 282 -30 205 211 0 0 chr13 46010666 46010704 -73734194 + (TA)n Simple_repeat Simple_repeat 1 38 0 263 225 27 88 chr13 46011379 46011566 -73733332 + L1MC3 LINE L1 6708 6771 -1014 783 184 0 22 chr13 46011603 46011739 -73733159 + FLAM_C SINE Alu 1 133 0 1048 115 204 0 chr13 46012213 46012404 -73732494 - MER30 DNA MER1_type 0 230 1 2207 105 3 3 chr13 46012462 46012767 -73732131 + AluSx SINE Alu 1 305 -7 541 213 71 38 chr13 46014325 46014508 -73730390 + LTR50 LTR ERVL 15 203 -592 451 309 57 17 chr13 46014519 46014694 -73730204 - MIR SINE MIR -80 182 1 688 300 50 0 chr13 46014794 46014994 -73729904 - MER63A DNA MER1_type 0 210 1 378 240 145 0 chr13 46015652 46015831 -73729067 - LTR40c LTR ERVL -106 359 155 429 315 21 0 chr13 46016052 46016195 -73728703 - HERVL40 LTR ERVL -138 5392 5247 2030 264 22 52 chr13 46016559 46017252 -73727646 - HERVL40 LTR ERVL -356 5174 4503 330 357 18 4 chr13 46017716 46017943 -73726955 - HERVL40 LTR ERVL -1545 3985 3756 2620 56 0 0 chr13 46018378 46018681 -73726217 + AluY SINE Alu 1 303 -8 429 268 81 30 chr13 46019315 46019550 -73725348 - LTR40c LTR ERVL -50 415 169 2096 101 21 3 chr13 46020957 46021122 -73723776 - AluSg SINE Alu -18 292 118 477 0 0 0 chr13 46021122 46021175 -73723723 + (TG)n Simple_repeat Simple_repeat 2 54 0 2096 101 21 3 chr13 46021175 46021296 -73723602 - AluSg SINE Alu -192 118 1 357 269 160 32 chr13 46022348 46022477 -73722421 + L1ME4a LINE L1 5666 5777 -344 2147 114 3 3 chr13 46022477 46022766 -73722132 + AluSx SINE Alu 1 289 -23 213 65 0 0 chr13 46022766 46022797 -73722101 + (TA)n Simple_repeat Simple_repeat 1 31 0 357 269 160 32 chr13 46022797 46022885 -73722013 + L1ME4a LINE L1 5776 5912 -209 327 157 0 0 chr13 46023195 46023265 -73721633 + (TA)n Simple_repeat Simple_repeat 1 70 0 1712 172 59 3 chr13 46023268 46023606 -73721292 - MLT2C1 LTR ERVL -40 357 1 272 341 71 56 chr13 46023740 46023992 -73720906 + L2 LINE L2 2722 2977 -337 1013 317 38 31 chr13 46025136 46025740 -73719158 + L1MB1 LINE L1 416 922 -5381 2460 240 149 23 chr13 46025910 46026115 -73718783 + L1MB1 LINE L1 800 978 -5404 2474 72 0 3 chr13 46026115 46026422 -73718476 + AluY SINE Alu 1 306 -5 2460 240 149 23 chr13 46026422 46027283 -73717615 + L1MB1 LINE L1 978 1730 -4652 1437 113 13 22 chr13 46027283 46027513 -73717385 + L1PA10 LINE L1 5929 6156 -12 2460 240 149 23 chr13 46027513 46027715 -73717183 + L1MB1 LINE L1 1730 1905 -4477 1900 113 59 48 chr13 46027715 46028086 -73716812 + THE1C LTR MaLR 1 375 0 2460 240 149 23 chr13 46028086 46028487 -73716411 + L1MB1 LINE L1 1905 2561 -3821 4516 166 43 15 chr13 46028497 46029529 -73715369 - L1MA7 LINE L1 -31 6260 5207 1096 228 50 0 chr13 46029529 46029906 -73714992 + L1MB1 LINE L1 3101 3496 -2886 3391 22 7 0 chr13 46030026 46030438 -73714460 - L1P2 LINE L1 -335 5819 5405 2387 99 0 0 chr13 46030440 46030773 -73714125 - THE1C LTR MaLR -42 333 1 6235 190 55 76 chr13 46030773 46032770 -73712128 + L1MB1 LINE L1 3572 5526 -856 2793 200 84 10 chr13 46032771 46033487 -73711411 + L1MB1 LINE L1 5628 6396 -8 2246 132 11 11 chr13 46033723 46034103 -73710795 - L1MC1 LINE L1 -17 6316 5937 225 139 0 0 chr13 46035871 46035907 -73708991 - Alu SINE Alu -8 292 257 2148 117 7 0 chr13 46035949 46036240 -73708658 - AluSx SINE Alu -18 294 2 385 313 172 12 chr13 46037218 46037381 -73707517 - MER5A DNA MER1_type 0 189 1 1947 148 21 0 chr13 46037426 46037717 -73707181 - AluSx SINE Alu -15 297 1 1203 153 76 8 chr13 46037822 46038071 -73706827 - L1MA9 LINE L1 -2 6310 6045 1179 170 60 0 chr13 46038391 46038626 -73706272 - L1MC2 LINE L1 -490 5854 5606 387 232 67 89 chr13 46038639 46038863 -73706035 - MLT1I LTR MaLR -62 347 129 2461 155 23 46 chr13 46039914 46040067 -73704831 + MLT1C LTR MaLR 1 156 -311 2228 115 0 0 chr13 46040067 46040362 -73704536 - AluSc SINE Alu -14 295 1 2461 155 23 46 chr13 46040362 46040686 -73704212 + MLT1C LTR MaLR 156 467 0 314 235 182 8 chr13 46040873 46041005 -73703893 - MLT1I LTR MaLR -5 404 250 1384 227 48 23 chr13 46041175 46041527 -73703371 - MLT1A1 LTR MaLR 0 365 5 366 306 272 18 chr13 46041625 46042095 -73702803 - L2 LINE L2 -2 3311 2736 386 234 65 16 chr13 46042103 46042227 -73702671 - LTR16A LTR ERVL -320 130 1 677 288 40 18 chr13 46043513 46043735 -73701163 + MIR SINE MIR 10 236 -26 317 231 91 74 chr13 46043844 46043965 -73700933 - MIR SINE MIR -70 138 16 26 0 0 0 chr13 46044526 46044552 -73700346 + AT_rich Low_complexity Low_complexity 1 26 0 3991 114 71 6 chr13 46044552 46045212 -73699686 - L1PA16 LINE L1 -20 6146 5444 2413 100 120 15 chr13 46046558 46047006 -73697892 - Tigger3(Golem) DNA MER2_type -136 2893 2395 568 118 11 0 chr13 46047006 46047099 -73697799 - L1PA8 LINE L1 -2 6170 6077 4188 154 80 13 chr13 46048796 46049570 -73695328 - LTR1B LTR ERV1 0 826 1 2101 146 52 3 chr13 46049876 46050245 -73694653 + MLT1B LTR MaLR 1 387 -3 275 276 0 0 chr13 46052707 46052783 -73692115 + MIR SINE MIR 78 153 -109 2138 113 3 29 chr13 46053332 46053641 -73691257 + AluSx SINE Alu 1 301 -11 188 167 21 0 chr13 46054402 46054450 -73690448 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1681 159 4 0 chr13 46054457 46054734 -73690164 - L1PB4 LINE L1 -13 6143 5866 300 286 92 17 chr13 46056330 46056449 -73688449 - L2 LINE L2 -557 2757 2630 1411 190 80 3 chr13 46056464 46056789 -73688109 + AluJo SINE Alu 1 347 0 435 38 0 0 chr13 46057566 46057619 -73687279 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 400 289 61 9 chr13 46057620 46057734 -73687164 - L2 LINE L2 -14 3299 3180 666 154 7 59 chr13 46057849 46057985 -73686913 - FLAM_A SINE Alu -3 130 2 1742 172 123 0 chr13 46058405 46058731 -73686167 + MER47A DNA MER2_type 1 366 0 422 332 142 0 chr13 46059066 46059277 -73685621 - MIR SINE MIR -17 245 5 29 0 0 0 chr13 46059311 46059340 -73685558 + AT_rich Low_complexity Low_complexity 1 29 0 633 271 62 56 chr13 46059641 46059999 -73684899 + L1ME2 LINE L1 49 408 -6015 932 267 81 65 chr13 46060058 46060735 -73684163 + L1ME2 LINE L1 2080 2767 -4355 3777 239 88 70 chr13 46060797 46062280 -73682618 + L1ME2 LINE L1 3760 5294 -1647 2215 113 0 7 chr13 46062280 46062582 -73682316 + AluSx SINE Alu 1 300 -12 3777 239 88 70 chr13 46062582 46063214 -73681684 + L1ME2 LINE L1 5294 5913 -1028 1816 221 81 25 chr13 46063524 46064421 -73680477 + L1ME2 LINE L1 5967 6958 -1 233 220 30 10 chr13 46065049 46065149 -73679749 + GA-rich Low_complexity Low_complexity 4 105 0 4922 73 30 0 chr13 46065193 46065834 -73679064 - PABL_A LTR ERV1 0 660 1 562 227 144 25 chr13 46066127 46066405 -73678493 + LTR50 LTR ERVL 481 791 -4 742 263 25 48 chr13 46067052 46067306 -73677592 + MIR SINE MIR 10 252 -10 298 333 67 86 chr13 46067325 46067592 -73677306 + L2 LINE L2 3011 3272 0 1743 125 88 25 chr13 46067937 46068290 -73676608 + THE1C LTR MaLR 1 375 0 10792 22 0 0 chr13 46069319 46071339 -73673559 - L1PA3 LINE L1 -5 6150 4131 2066 239 126 11 chr13 46071723 46072255 -73672643 + MLT1E LTR MaLR 1 593 0 195 338 14 0 chr13 46072962 46073036 -73671862 - MIR SINE MIR -96 166 92 1553 170 26 51 chr13 46073320 46073709 -73671189 + L1MD2 LINE L1 5281 5659 -700 2266 190 91 18 chr13 46073713 46074228 -73670670 + L1MD2 LINE L1 5804 6356 -3 193 269 96 0 chr13 46074267 46074319 -73670579 - L2 LINE L2 -7 3265 3209 303 277 146 8 chr13 46077330 46077460 -73667438 + MIR SINE MIR 21 168 -94 914 190 6 11 chr13 46077821 46078000 -73666898 + MER5B DNA MER1_type 1 178 0 331 292 47 44 chr13 46078231 46078368 -73666530 - MIR3 SINE MIR -41 167 31 1865 201 57 55 chr13 46078771 46079284 -73665614 - MER67D LTR ERV1 0 514 1 531 267 11 61 chr13 46079433 46079613 -73665285 - MER5B DNA MER1_type -4 174 4 213 362 24 24 chr13 46079622 46079749 -73665149 - MIR SINE MIR -57 151 25 215 214 71 0 chr13 46079916 46079972 -73664926 + MIR SINE MIR 92 151 -111 195 223 0 63 chr13 46079974 46080149 -73664749 + (TA)n Simple_repeat Simple_repeat 1 164 0 354 205 0 49 chr13 46080160 46080345 -73664553 + (TA)n Simple_repeat Simple_repeat 1 176 0 289 229 14 0 chr13 46080358 46080428 -73664470 - HAL1 LINE L1 -971 1536 1466 351 0 0 0 chr13 46080455 46080494 -73664404 + (TA)n Simple_repeat Simple_repeat 1 39 0 2057 109 22 0 chr13 46080832 46081107 -73663791 - AluSp SINE Alu -28 285 5 258 283 76 69 chr13 46081256 46081832 -73663066 - L1M4 LINE L1 -1089 5057 4478 339 215 51 0 chr13 46081888 46081967 -73662931 - HAL1 LINE L1 -952 1555 1473 694 111 83 19 chr13 46082376 46082484 -73662414 - FRAM SINE Alu -25 151 37 27 81 0 0 chr13 46082980 46083042 -73661856 + AT_rich Low_complexity Low_complexity 1 62 0 292 213 16 16 chr13 46083257 46083318 -73661580 - MIR SINE MIR -6 256 196 327 286 166 0 chr13 46083679 46083854 -73661044 + MIR SINE MIR 3 206 -56 918 322 122 12 chr13 46084210 46084874 -73660024 + L2 LINE L2 1396 2132 -1182 285 336 35 26 chr13 46084994 46085107 -73659791 - L2 LINE L2 -12 3260 3147 427 298 29 44 chr13 46085444 46085649 -73659249 - HAL1 LINE L1 0 2507 2306 333 259 129 0 chr13 46085698 46085868 -73659030 - HAL1 LINE L1 -276 2231 2040 307 185 0 0 chr13 46085896 46085950 -73658948 - LTR3b LTR ERVK 0 500 447 3005 116 61 4 chr13 46085950 46086407 -73658491 - LTR3b LTR ERVK -17 483 1 2141 265 65 14 chr13 46086407 46088088 -73656810 - HAL1 LINE L1 -507 2000 1 549 230 82 0 chr13 46088931 46089066 -73655832 - MIR SINE MIR -13 249 104 550 303 34 0 chr13 46090254 46090429 -73654469 + MIR SINE MIR 76 256 -6 611 345 72 14 chr13 46092171 46092533 -73652365 + L2 LINE L2 2150 2532 -782 227 357 36 54 chr13 46092541 46092709 -73652189 - L2 LINE L2 -8 3264 3100 762 277 36 9 chr13 46092755 46092975 -73651923 - MIR SINE MIR -24 238 13 24 0 0 0 chr13 46093325 46093349 -73651549 + AT_rich Low_complexity Low_complexity 1 24 0 42 82 0 0 chr13 46093847 46093945 -73650953 + AT_rich Low_complexity Low_complexity 1 98 0 1615 187 6 12 chr13 46094092 46094418 -73650480 + L1MB1 LINE L1 5799 6122 -46 608 302 210 8 chr13 46094699 46095080 -73649818 + L2 LINE L2 1901 2358 -956 924 321 113 30 chr13 46095088 46095761 -73649137 + L2 LINE L2 2569 3308 -5 339 225 7 4 chr13 46097002 46097077 -73647821 - AluJ/monomer SINE Alu -248 55 1 1913 110 0 0 chr13 46097281 46097536 -73647362 - AluSx SINE Alu -14 298 44 441 344 79 22 chr13 46097846 46098073 -73646825 + MIR SINE MIR 5 244 -18 2190 115 3 3 chr13 46098592 46098904 -73645994 + AluSq SINE Alu 1 312 -1 2363 243 60 41 chr13 46099196 46099979 -73644919 + L1MEc LINE L1 35 832 -5564 1451 209 73 6 chr13 46102461 46102805 -73642093 - MLT1A2 LTR MaLR -3 371 5 682 345 89 44 chr13 46102820 46103506 -73641392 + HAL1b LINE L1 61 777 -571 1601 152 16 0 chr13 46103629 46103872 -73641026 - AluSx SINE Alu -61 251 5 495 318 64 42 chr13 46104042 46104494 -73640404 + L1MEc LINE L1 2172 2586 -3629 1213 128 29 0 chr13 46104725 46104929 -73639969 + L1MA4A LINE L1 6086 6295 -8 543 331 61 20 chr13 46105383 46105779 -73639119 - L1MC/D LINE L1 -2143 5665 5254 2282 97 50 42 chr13 46106827 46107187 -73637711 - THE1B LTR MaLR -1 363 1 278 346 15 8 chr13 46107642 46107772 -73637126 + L2 LINE L2 3181 3311 -2 318 330 191 10 chr13 46108347 46108556 -73636342 + MIR SINE MIR 14 260 -2 805 134 76 41 chr13 46108808 46108980 -73635918 - MER53 DNA DNA -7 182 5 242 87 22 0 chr13 46109137 46109183 -73635715 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6648 202 25 13 chr13 46109569 46112027 -73632871 - L1MB3 LINE L1 -30 6389 3902 12694 177 35 24 chr13 46112084 46114516 -73630382 - L1MB3 LINE L1 -2888 3494 1090 2111 133 10 3 chr13 46114516 46114824 -73630074 - AluSq SINE Alu -3 310 1 12694 177 35 24 chr13 46114824 46114940 -73629958 - L1MB3 LINE L1 -5292 1090 977 2066 147 3 0 chr13 46114940 46115247 -73629651 - AluSc SINE Alu -1 308 1 12694 177 35 24 chr13 46115247 46115315 -73629583 - L1MB3 LINE L1 -5405 977 911 189 0 0 0 chr13 46115315 46115336 -73629562 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 12694 177 35 24 chr13 46115336 46116156 -73628742 - L1MB3 LINE L1 -5471 911 20 29 0 0 0 chr13 46116379 46116408 -73628490 + AT_rich Low_complexity Low_complexity 1 29 0 2408 88 0 0 chr13 46116835 46117140 -73627758 + AluY SINE Alu 1 305 -6 561 224 22 117 chr13 46118090 46118313 -73626585 - MIR SINE MIR -29 233 32 1224 283 55 25 chr13 46120307 46120706 -73624192 - LTR16C LTR ERVL 0 491 81 22 70 0 0 chr13 46121280 46121323 -73623575 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 46121638 46121660 -73623238 + AT_rich Low_complexity Low_complexity 1 22 0 1550 262 26 4 chr13 46122094 46122598 -73622300 - L1P LINE L1 -2885 3261 2747 180 97 0 0 chr13 46122620 46122651 -73622247 + L2 LINE L2 2943 2973 -340 813 267 42 84 chr13 46122810 46123166 -73621732 + L2 LINE L2 2972 3312 -1 1458 205 15 0 chr13 46123668 46123936 -73620962 - AluJo SINE Alu -25 287 16 22 35 0 0 chr13 46123936 46123965 -73620933 + AT_rich Low_complexity Low_complexity 1 29 0 1497 194 4 18 chr13 46123965 46124243 -73620655 + AluJo SINE Alu 1 274 -38 1659 120 0 0 chr13 46124269 46124528 -73620370 + L1MA2 LINE L1 6046 6304 0 15722 206 50 16 chr13 46124749 46130140 -73614758 + L1PA15 LINE L1 1247 6816 0 349 242 159 17 chr13 46130250 46130482 -73614416 - MER5C DNA MER1_type 0 324 4 1856 198 17 14 chr13 46130573 46130926 -73613972 + MLT1A1 LTR MaLR 12 365 0 416 270 63 0 chr13 46130935 46131046 -73613852 + L2 LINE L2 3196 3313 0 2327 50 7 0 chr13 46131488 46131786 -73613112 + AluY SINE Alu 1 300 0 2584 137 74 11 chr13 46133574 46134048 -73610850 - MLT1D LTR MaLR 0 505 2 288 355 63 18 chr13 46134319 46134510 -73610388 - MIR SINE MIR -57 151 3 1423 258 102 38 chr13 46135774 46136461 -73608437 - HAL1 LINE L1 -32 2475 1745 279 203 0 0 chr13 46136461 46136520 -73608378 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 248 167 0 37 chr13 46136521 46136575 -73608323 - L1MC4 LINE L1 -1339 6703 6652 1215 264 87 25 chr13 46136602 46137117 -73607781 - HAL1 LINE L1 -794 1713 1167 1056 219 105 30 chr13 46137182 46137621 -73607277 + Charlie1b DNA MER1_type 51 522 -1 1781 261 125 52 chr13 46137625 46138520 -73606378 - HAL1 LINE L1 -1461 1046 87 290 267 7 7 chr13 46138526 46138661 -73606237 + (TA)n Simple_repeat Simple_repeat 2 136 0 27 49 0 0 chr13 46139126 46139167 -73605731 + AT_rich Low_complexity Low_complexity 1 41 0 191 354 0 15 chr13 46139893 46139958 -73604940 - MER5A DNA MER1_type -86 103 40 498 317 157 3 chr13 46140578 46140884 -73604014 + L3 LINE CR1 1218 1570 -7 23 0 0 0 chr13 46141041 46141064 -73603834 + AT_rich Low_complexity Low_complexity 1 23 0 1280 235 81 30 chr13 46141086 46141456 -73603442 - MSTD LTR MaLR -7 389 1 920 166 7 0 chr13 46141626 46141771 -73603127 - MER44D DNA MER2_type 0 605 588 779 166 6 103 chr13 46141771 46141946 -73602952 - FRAM SINE Alu -17 159 2 3237 196 14 2 chr13 46141946 46142534 -73602364 - MER44D DNA MER2_type -105 600 6 1578 204 36 31 chr13 46143013 46143370 -73601528 + MLT1A1 LTR MaLR 1 359 -6 276 243 129 7 chr13 46143476 46143616 -73601282 + LTR68 LTR ERV1 9 165 -575 553 348 179 14 chr13 46144124 46145160 -73599738 + L2 LINE L2 1264 2470 -844 216 0 0 0 chr13 46145703 46145727 -73599171 + (T)n Simple_repeat Simple_repeat 1 24 0 1916 216 31 13 chr13 46146387 46146835 -73598063 - LTR40b LTR ERVL -3 459 4 3315 132 8 4 chr13 46146936 46147429 -73597469 + MER41E LTR ERV1 17 511 -1 559 187 66 28 chr13 46147837 46148019 -73596879 - L1MC5 LINE L1 -34 7927 7739 333 118 0 0 chr13 46148295 46148346 -73596552 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1011 188 12 78 chr13 46149365 46149610 -73595288 - L1PA16 LINE L1 -16 6150 5922 515 112 45 0 chr13 46150519 46150608 -73594290 - L1PA16 LINE L1 -5 6161 6069 475 284 35 55 chr13 46150682 46150883 -73594015 + MIR SINE MIR 25 221 -41 425 285 233 5 chr13 46152411 46152604 -73592294 + MIR SINE MIR 20 256 -6 687 153 16 32 chr13 46153002 46153126 -73591772 - LTR54B LTR ERV1 -363 135 14 687 110 0 0 chr13 46153683 46153783 -73591115 + L1P3 LINE L1 733 832 -5043 238 235 20 0 chr13 46153783 46153834 -73591064 + LTR30 LTR ERV1 1 52 -670 1316 103 11 119 chr13 46153834 46154095 -73590803 + LTR12 LTR ERV1 53 285 -429 323 233 11 0 chr13 46154095 46154185 -73590713 + LTR30 LTR ERV1 552 642 -80 1529 120 36 0 chr13 46154187 46154412 -73590486 + LTR12 LTR ERV1 481 713 -1 19469 136 16 16 chr13 46154412 46156690 -73588208 + L1P3 LINE L1 828 3105 -3356 834 109 16 0 chr13 46156690 46156809 -73588089 + L1PA7 LINE L1 6017 6146 -8 19469 136 16 16 chr13 46156809 46159162 -73585736 + L1P3 LINE L1 3105 5514 -947 1897 246 66 36 chr13 46159167 46159606 -73585292 - HERV15 LTR ERV1 -3686 5049 4581 2208 88 0 7 chr13 46159606 46159921 -73584977 - AluY SINE Alu 0 313 1 1897 246 66 36 chr13 46159921 46160148 -73584750 - HERV15 LTR ERV1 -4154 4581 4362 * 6164 290 33 47 chr13 46160133 46162751 -73582147 - HERV15 LTR ERV1 -5843 2583 1 622 205 136 61 chr13 46162751 46163155 -73581743 - LTR30 LTR ERV1 0 596 190 29 28 0 0 chr13 46163508 46163544 -73581354 + AT_rich Low_complexity Low_complexity 1 36 0 357 266 25 118 chr13 46163908 46164145 -73580753 - L3 LINE CR1 -303 1274 1060 246 291 66 60 chr13 46165422 46165573 -73579325 + L2 LINE L2 1752 1903 -1411 753 276 46 8 chr13 46166083 46166322 -73578576 - MIR SINE MIR 0 262 15 2505 30 7 3 chr13 46166705 46167006 -73577892 + AluY SINE Alu 1 302 -9 330 262 0 0 chr13 46167243 46167304 -73577594 - MER81 DNA DNA -49 65 5 1017 269 112 44 chr13 46169556 46170054 -73574844 - L2 LINE L2 0 3313 2795 2564 167 16 7 chr13 46170058 46170507 -73574391 + MLT1C LTR MaLR 10 462 -5 1220 222 50 104 chr13 46170512 46171031 -73573867 - L2 LINE L2 -517 2797 2307 335 317 58 0 chr13 46172915 46173019 -73571879 - MIR SINE MIR -69 139 30 21 36 0 0 chr13 46173417 46173445 -73571453 + AT_rich Low_complexity Low_complexity 1 28 0 258 136 0 0 chr13 46173515 46173559 -73571339 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 233 342 27 77 chr13 46173828 46174126 -73570772 - L2 LINE L2 -337 2977 2695 482 118 0 118 chr13 46174239 46174443 -73570455 + (TA)n Simple_repeat Simple_repeat 1 180 0 1209 242 121 22 chr13 46175649 46175904 -73568994 - MLT1D LTR MaLR -5 500 272 369 75 0 0 chr13 46175904 46175957 -73568941 + (TG)n Simple_repeat Simple_repeat 1 53 0 1209 242 121 22 chr13 46175957 46176156 -73568742 - MLT1D LTR MaLR -233 272 1 747 277 42 8 chr13 46176626 46176864 -73568034 - MIR SINE MIR 0 262 17 22 70 0 0 chr13 46177345 46177388 -73567510 + AT_rich Low_complexity Low_complexity 1 43 0 198 118 0 0 chr13 46178117 46178151 -73566747 + (TC)n Simple_repeat Simple_repeat 2 35 0 402 21 0 0 chr13 46178153 46178200 -73566698 + (CA)n Simple_repeat Simple_repeat 1 47 0 287 200 36 86 chr13 46178513 46178530 -73566368 - L1MA10 LINE L1 -2 6332 6316 358 240 77 81 chr13 46178530 46178822 -73566076 - L1ME1 LINE L1 -14 6152 5873 * 1355 224 41 10 chr13 46178820 46179330 -73565568 - L1ME1 LINE L1 -718 5466 4943 242 218 0 18 chr13 46180103 46180158 -73564740 + (TG)n Simple_repeat Simple_repeat 1 54 0 451 303 61 35 chr13 46181029 46181227 -73563671 - MIR SINE MIR -39 223 21 268 258 11 43 chr13 46182549 46182642 -73562256 + (TATATG)n Simple_repeat Simple_repeat 5 94 0 233 168 10 109 chr13 46182645 46182746 -73562152 + L1MC4 LINE L1 6615 6705 -1337 322 237 44 26 chr13 46182746 46182860 -73562038 + (TATATG)n Simple_repeat Simple_repeat 6 121 0 2519 135 29 11 chr13 46182948 46183400 -73561498 - L1MA8 LINE L1 0 6291 5832 407 289 52 0 chr13 46184184 46184319 -73560579 - MIR3 SINE MIR -20 188 47 317 349 35 30 chr13 46185474 46185643 -73559255 + MIR SINE MIR 76 245 -17 432 217 78 55 chr13 46185746 46185963 -73558935 - MER112 DNA MER1_type -38 222 1 385 246 0 73 chr13 46186098 46186151 -73558747 + MIR SINE MIR 105 148 -114 2222 123 0 16 chr13 46186151 46186469 -73558429 + AluSq SINE Alu 1 313 0 385 246 0 73 chr13 46186469 46186525 -73558373 + MIR SINE MIR 148 206 -56 223 220 242 77 chr13 46188223 46188405 -73556493 - MIR SINE MIR -50 212 1 379 278 153 31 chr13 46188657 46188953 -73555945 + MLT1L LTR MaLR 216 615 0 474 295 121 5 chr13 46189421 46189645 -73555253 - MIR SINE MIR -6 256 7 2305 86 13 0 chr13 46189975 46190278 -73554620 + AluSp SINE Alu 1 307 -6 484 290 73 13 chr13 46190390 46190693 -73554205 + L1ME4a LINE L1 5687 6007 -114 26 64 0 0 chr13 46190700 46190747 -73554151 + AT_rich Low_complexity Low_complexity 1 47 0 2160 156 30 28 chr13 46190917 46191348 -73553550 + MSTB1 LTR MaLR 1 432 0 338 309 50 83 chr13 46191565 46191928 -73552970 - L2 LINE L2 -136 3177 2827 2196 80 58 0 chr13 46194011 46194287 -73550611 - AluSg SINE Alu -18 292 1 276 141 56 14 chr13 46194294 46194365 -73550533 - L1MD3 LINE L1 0 7995 7922 476 306 102 24 chr13 46194661 46194867 -73550031 + MIR SINE MIR 28 249 -13 2519 185 67 45 chr13 46194910 46195536 -73549362 + MER82 DNA MER2_type 1 640 -13 788 291 26 0 chr13 46195809 46196036 -73548862 + MIR SINE MIR 1 233 -29 2163 120 0 3 chr13 46196252 46196702 -73548196 - AluSg1 SINE Alu 0 449 1 208 333 90 0 chr13 46196715 46196793 -73548105 + L2 LINE L2 3229 3313 0 196 316 0 18 chr13 46197001 46197058 -73547840 + MER5A DNA MER1_type 46 101 -88 375 298 8 53 chr13 46197156 46197287 -73547611 + L2 LINE L2 3189 3313 0 400 262 83 30 chr13 46197370 46197538 -73547360 - MER5A DNA MER1_type -6 183 7 1996 167 37 31 chr13 46197666 46198214 -73546684 - MLT2A2 LTR ERVL 0 554 1 9144 160 9 4 chr13 46199616 46201340 -73543558 - L1P3 LINE L1 -2692 3769 2038 741 228 6 6 chr13 46201338 46201505 -73543393 - L1P3 LINE L1 -5708 167 1 * 2034 143 10 0 chr13 46201510 46201841 -73543057 - AluSx SINE Alu 0 334 1 2050 262 92 44 chr13 46202388 46202865 -73542033 - HAL1 LINE L1 -414 2093 1640 2555 175 7 85 chr13 46202865 46203475 -73541423 + MER68 LTR ERV1 1 562 0 2050 262 92 44 chr13 46203475 46204307 -73540591 - HAL1 LINE L1 -867 1640 722 231 311 129 0 chr13 46204364 46204496 -73540402 - HAL1 LINE L1 -1901 606 458 552 282 23 53 chr13 46204662 46204924 -73539974 - HAL1 LINE L1 -2250 257 4 353 250 0 0 chr13 46204959 46205031 -73539867 + L2 LINE L2 3234 3305 -8 220 232 11 11 chr13 46205031 46205126 -73539772 + (TA)n Simple_repeat Simple_repeat 2 96 0 303 296 177 58 chr13 46205205 46205337 -73539561 - MLT1K LTR MaLR -63 525 410 1837 147 26 57 chr13 46205337 46205724 -73539174 - THE1C LTR MaLR 0 375 1 303 296 177 58 chr13 46205724 46205902 -73538996 - MLT1K LTR MaLR -178 410 178 264 237 0 82 chr13 46205912 46206009 -73538889 + MER58 DNA MER1_type 11 99 -242 248 180 0 33 chr13 46206026 46206087 -73538811 + MER58 DNA MER1_type 2328 2386 -34 298 273 23 0 chr13 46206700 46206788 -73538110 + L1MC4 LINE L1 6614 6703 -1339 22 0 0 0 chr13 46206788 46206810 -73538088 + AT_rich Low_complexity Low_complexity 1 22 0 394 266 179 23 chr13 46207029 46207247 -73537651 + L1MC4a LINE L1 5597 5848 -1960 2280 127 31 14 chr13 46207250 46207607 -73537291 + THE1B LTR MaLR 1 426 0 285 247 25 0 chr13 46207719 46207800 -73537098 + L1MC4 LINE L1 6617 6699 -1343 * 702 296 99 63 chr13 46207774 46208584 -73536314 + L1MC4a LINE L1 5948 6786 -1022 760 116 0 16 chr13 46208584 46208705 -73536193 + L1PA11 LINE L1 6053 6171 -3 1681 128 24 14 chr13 46208754 46209050 -73535848 - L1MA4 LINE L1 -7 6293 5995 329 156 31 0 chr13 46209108 46209172 -73535726 + L1MC5 LINE L1 7000 7065 -896 1740 189 52 6 chr13 46209260 46209609 -73535289 + MLT1A1 LTR MaLR 1 365 0 469 246 29 14 chr13 46210603 46210741 -73534157 + L1MC5 LINE L1 7095 7234 -727 244 254 123 72 chr13 46210838 46211243 -73533655 + L1MC5 LINE L1 7250 7675 -286 2730 175 223 48 chr13 46211243 46211964 -73532934 + MER52A LTR ERV1 1 847 -908 2649 95 171 122 chr13 46212138 46213130 -73531768 - LTR12 LTR ERV1 0 2429 57 257 231 0 0 chr13 46213132 46213184 -73531714 - LTR30 LTR ERV1 -670 52 1 391 263 105 58 chr13 46213357 46213434 -73531464 + L1ME2 LINE L1 1278 1350 -5772 2409 90 0 7 chr13 46213434 46213744 -73531154 + AluSp SINE Alu 1 308 -5 391 263 105 58 chr13 46213744 46214138 -73530760 + L1ME2 LINE L1 1350 1724 -5398 261 0 0 0 chr13 46214138 46214167 -73530731 + (CA)n Simple_repeat Simple_repeat 2 30 0 391 263 105 58 chr13 46214167 46214342 -73530556 + L1ME2 LINE L1 1724 2173 -4949 * 1735 259 90 36 chr13 46214326 46214553 -73530345 + L1ME2 LINE L1 5028 5241 -1700 1321 19 0 0 chr13 46214553 46214708 -73530190 - L1PA4 LINE L1 0 6155 6001 1735 259 90 36 chr13 46214708 46215412 -73529486 + L1ME2 LINE L1 5241 6009 -932 * 1997 241 68 37 chr13 46215394 46216012 -73528886 + L1MCa LINE L1 5 641 -5785 458 196 65 0 chr13 46216044 46216151 -73528747 + L1MCa LINE L1 573 686 -5740 2822 168 8 48 chr13 46216158 46216788 -73528110 + L1MC2 LINE L1 5727 6331 -13 2077 219 93 20 chr13 46216791 46217249 -73527649 + L1ME2 LINE L1 5991 6524 -435 2181 113 0 3 chr13 46217249 46217542 -73527356 + AluSx SINE Alu 1 292 -20 2077 219 93 20 chr13 46217542 46217825 -73527073 + L1ME2 LINE L1 6524 6785 -174 1094 181 0 0 chr13 46217838 46218015 -73526883 + MER58A DNA MER1_type 47 223 -1 340 290 125 11 chr13 46218805 46218981 -73525917 - MIR SINE MIR 0 262 67 4024 210 40 31 chr13 46219069 46220142 -73524756 - Tigger6a DNA MER2_type 0 1083 1 289 262 29 40 chr13 46221442 46221618 -73523280 - L1ME LINE L1 -273 5897 5725 2082 108 0 0 chr13 46221725 46222004 -73522894 - AluSq SINE Alu 0 313 35 264 256 183 17 chr13 46222047 46222181 -73522717 - L1P4 LINE L1 -596 5570 5417 250 314 41 29 chr13 46222252 46222424 -73522474 - L2 LINE L2 -1410 1904 1731 386 162 101 30 chr13 46223171 46223270 -73521628 - L1MC2 LINE L1 0 6344 6239 3083 102 104 8 chr13 46223295 46223776 -73521122 - MER1A DNA MER1_type 0 527 1 22 56 0 0 chr13 46224266 46224302 -73520596 + AT_rich Low_complexity Low_complexity 1 36 0 3782 219 47 22 chr13 46225483 46226570 -73518328 - L1M4 LINE L1 -1373 4773 3660 890 326 109 5 chr13 46226678 46227089 -73517809 - L2 LINE L2 0 3313 2860 507 286 108 69 chr13 46227095 46227473 -73517425 - MLT1J LTR MaLR -3 508 116 1806 160 36 3 chr13 46227572 46227929 -73516969 + L1MA8 LINE L1 5918 6286 -5 360 300 75 0 chr13 46228118 46228238 -73516660 - LTR16C LTR ERVL -2 489 361 725 356 41 41 chr13 46228465 46229153 -73515745 - ERVL LTR ERVL -423 5341 4654 1272 136 0 0 chr13 46229170 46229384 -73515514 - L1MA4 LINE L1 0 6300 6087 615 169 16 0 chr13 46229393 46229517 -73515381 - L1MA3 LINE L1 -288 6017 5892 431 339 103 9 chr13 46229542 46229775 -73515123 - ERVL LTR ERVL -1188 4576 4322 1309 140 115 0 chr13 46229804 46230039 -73514859 - MER2 DNA MER2_type -83 262 1 658 333 77 35 chr13 46230137 46230707 -73514191 - ERVL LTR ERVL -1543 4221 3628 375 331 58 26 chr13 46230731 46231021 -73513877 - ERVL LTR ERVL -2220 3434 3112 1900 320 95 58 chr13 46231138 46231699 -73513199 - ERVL LTR ERVL -2771 2993 2454 1564 132 14 14 chr13 46231699 46231979 -73512919 + L1MA5A LINE L1 6013 6292 -5 1900 320 95 58 chr13 46231979 46233064 -73511834 - ERVL LTR ERVL -3310 2454 1286 2241 211 38 58 chr13 46234058 46234690 -73510208 + MLT1D LTR MaLR 1 626 0 336 94 0 0 chr13 46235181 46235234 -73509664 + (CATTC)n Simple_repeat Simple_repeat 3 55 0 265 233 81 0 chr13 46235667 46235753 -73509145 - MIR SINE MIR -59 203 111 309 245 170 0 chr13 46237494 46237600 -73507298 + MIR SINE MIR 105 228 -34 306 329 2 29 chr13 46239316 46239466 -73505432 + MIR SINE MIR 22 166 -62 26 0 0 0 chr13 46239681 46239707 -73505191 + AT_rich Low_complexity Low_complexity 1 26 0 1084 220 3 80 chr13 46240413 46240713 -73504185 - MER76 LTR ERV -410 278 2 214 264 14 28 chr13 46240874 46240946 -73503952 + MIR SINE MIR 81 151 -57 1837 199 98 19 chr13 46241097 46241565 -73503333 + MLT1D LTR MaLR 1 505 0 259 346 162 13 chr13 46243019 46243253 -73501645 + L3 LINE CR1 1307 1575 -2 201 74 0 0 chr13 46243626 46243653 -73501245 + (T)n Simple_repeat Simple_repeat 1 27 0 225 328 141 0 chr13 46244481 46244609 -73500289 + LTR16C LTR ERVL 104 249 -242 396 0 0 0 chr13 46244747 46244791 -73500107 + (CA)n Simple_repeat Simple_repeat 1 44 0 2075 220 126 9 chr13 46244967 46245499 -73499399 - L1MCa LINE L1 -5816 610 17 2228 103 0 0 chr13 46246569 46246851 -73498047 + AluSx SINE Alu 12 293 -19 197 121 30 0 chr13 46247072 46247105 -73497793 - L2 LINE L2 -23 3249 3216 * 777 242 102 5 chr13 46247076 46247291 -73497607 - MIR SINE MIR -22 240 5 801 249 10 5 chr13 46247618 46247811 -73497087 + MIR SINE MIR 68 261 -1 1308 204 42 92 chr13 46248561 46249018 -73495880 - MER63B DNA MER1_type 0 436 3 1446 164 174 0 chr13 46249202 46249513 -73495385 + MER47A DNA MER2_type 2 366 0 193 304 165 9 chr13 46249703 46249818 -73495080 + L2 LINE L2 3169 3301 -12 622 221 13 20 chr13 46250958 46251107 -73493791 + L1M4 LINE L1 14 161 -6381 478 248 13 13 chr13 46251136 46251293 -73493605 - L1MB7 LINE L1 -3 6181 6025 1776 168 14 7 chr13 46251293 46251585 -73493313 + AluJb SINE Alu 1 294 -18 232 306 40 6 chr13 46252098 46252271 -73492627 - L1M4 LINE L1 -3519 2627 2449 21 36 0 0 chr13 46252321 46252349 -73492549 + AT_rich Low_complexity Low_complexity 1 28 0 2081 133 3 3 chr13 46252546 46252840 -73492058 - AluSx SINE Alu -16 296 3 358 318 75 34 chr13 46252844 46253083 -73491815 - L1MC4a LINE L1 -1983 5825 5577 1858 168 3 7 chr13 46253382 46253691 -73491207 - AluJb SINE Alu -2 310 3 3116 171 84 0 chr13 46253697 46254289 -73490609 + MER73 LTR ERVL 1 642 -2 2656 241 43 19 chr13 46254724 46255461 -73489437 + L1M4 LINE L1 4136 4890 -1754 1428 159 31 72 chr13 46255453 46255694 -73489204 + L1MB5 LINE L1 5867 6093 -81 * 2346 98 0 0 chr13 46255694 46255989 -73488909 + AluSx SINE Alu 1 295 -17 1428 159 31 72 chr13 46255989 46256068 -73488830 + L1MB5 LINE L1 6093 6174 0 21 0 0 0 chr13 46256105 46256126 -73488772 + AT_rich Low_complexity Low_complexity 1 21 0 571 273 65 22 chr13 46256192 46256548 -73488350 + L1M4 LINE L1 2194 2564 -3582 25 0 0 0 chr13 46257111 46257136 -73487762 + AT_rich Low_complexity Low_complexity 1 25 0 681 267 28 16 chr13 46257194 46257449 -73487449 - MIR SINE MIR -1 261 4 405 281 15 55 chr13 46257494 46257640 -73487258 - MIR3 SINE MIR -64 144 9 297 197 51 17 chr13 46258122 46258239 -73486659 + (TA)n Simple_repeat Simple_repeat 2 122 0 667 242 36 0 chr13 46258880 46259045 -73485853 - MER5B DNA MER1_type -4 174 4 197 308 19 0 chr13 46259567 46259619 -73485279 + MIR SINE MIR 66 118 -90 216 295 158 0 chr13 46260650 46260745 -73484153 + L2 LINE L2 3163 3272 0 414 0 0 0 chr13 46261204 46261250 -73483648 + (TG)n Simple_repeat Simple_repeat 1 46 0 1766 100 0 8 chr13 46261283 46261522 -73483376 + AluSg/x SINE Alu 73 309 -3 25 0 0 0 chr13 46261720 46261745 -73483153 + AT_rich Low_complexity Low_complexity 1 25 0 204 269 340 19 chr13 46262071 46262227 -73482671 + MIR SINE MIR 50 255 -7 497 79 53 0 chr13 46264659 46264735 -73480163 - MADE1 DNA Mariner 0 80 1 196 226 22 109 chr13 46264805 46264907 -73479991 - MIR SINE MIR -75 133 74 505 333 31 0 chr13 46264956 46265118 -73479780 - MIR3 SINE MIR -28 180 14 619 296 105 4 chr13 46265441 46265626 -73479272 + MLT1L LTR MaLR 322 544 -71 762 234 61 5 chr13 46265626 46265823 -73479075 - MER63A DNA MER1_type -2 208 1 619 296 105 4 chr13 46265823 46265904 -73478994 + MLT1L LTR MaLR 544 615 0 823 113 8 8 chr13 46266539 46266672 -73478226 - L1MA3 LINE L1 0 6305 6173 232 211 113 42 chr13 46266875 46266946 -73477952 + MIR SINE MIR 79 154 -108 315 325 48 18 chr13 46268339 46268505 -73476393 - MIR SINE MIR -26 236 66 294 220 37 73 chr13 46268827 46268893 -73476005 - MER103 DNA DNA -52 114 52 2103 129 3 7 chr13 46268893 46269195 -73475703 - AluSp SINE Alu -12 301 1 294 220 37 73 chr13 46269195 46269237 -73475661 - MER103 DNA DNA -114 52 10 4086 184 45 7 chr13 46269467 46270720 -73474178 - L1MB7 LINE L1 -8 6674 5376 1857 166 19 44 chr13 46270730 46271050 -73473848 - AluJb SINE Alu 0 312 1 1576 215 63 14 chr13 46271051 46271479 -73473419 - MLT1C LTR MaLR 0 467 19 3894 217 40 84 chr13 46271521 46272736 -73472162 - MLT1C-int LTR MaLR 0 1371 210 382 225 18 78 chr13 46272729 46272947 -73471951 - L1MB7 LINE L1 -4907 1739 1535 * 25966 21 0 0 chr13 46272948 46276940 -73467958 - L1PA2 LINE L1 0 6155 2165 1138 231 25 76 chr13 46276941 46277494 -73467404 - L1MB7 LINE L1 -4977 1565 1041 1875 167 10 7 chr13 46277495 46277795 -73467103 + AluJb SINE Alu 1 301 -11 696 203 14 0 chr13 46277915 46278058 -73466840 + AluJb SINE Alu 159 303 -9 1739 204 49 34 chr13 46278063 46278557 -73466341 - L1MB7 LINE L1 -5494 1048 548 1270 237 70 45 chr13 46278872 46279497 -73465401 - HAL1b LINE L1 -631 717 77 298 270 22 11 chr13 46280166 46280255 -73464643 - MLT1J2 LTR MaLR -294 156 67 555 324 53 8 chr13 46280334 46280578 -73464320 - MLT1K LTR MaLR -177 411 157 1825 202 53 26 chr13 46280895 46280936 -73463962 + MLT1C LTR MaLR 1 39 -428 2282 105 0 3 chr13 46280936 46281230 -73463668 + AluSx SINE Alu 1 293 -19 1825 202 53 26 chr13 46281230 46281643 -73463255 + MLT1C LTR MaLR 39 467 0 3002 269 89 34 chr13 46281777 46283267 -73461631 - L1MEc LINE L1 -4694 1702 131 323 325 158 0 chr13 46284946 46285066 -73459832 - MIR SINE MIR -73 189 51 407 358 30 12 chr13 46287392 46287557 -73457341 - MIR SINE MIR -74 188 21 1565 231 71 0 chr13 46287803 46288171 -73456727 - MSTD LTR MaLR 0 396 3 288 111 0 0 chr13 46288472 46288517 -73456381 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 219 329 13 107 chr13 46288564 46288664 -73456234 - L2 LINE L2 -87 3185 3102 425 259 9 26 chr13 46288664 46288780 -73456118 + MER81 DNA DNA 1 114 0 219 329 13 107 chr13 46288780 46288828 -73456070 - L2 LINE L2 -170 3102 3051 297 0 0 0 chr13 46289006 46289039 -73455859 + (CA)n Simple_repeat Simple_repeat 2 34 0 243 0 0 0 chr13 46289038 46289065 -73455833 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 280 272 80 24 chr13 46290461 46290586 -73454312 + MER58C DNA MER1_type 1 132 -83 425 258 0 0 chr13 46290652 46290741 -73454157 + MER58C DNA MER1_type 127 215 0 541 227 0 57 chr13 46291126 46291267 -73453631 - FLAM_C SINE Alu 0 133 1 2073 153 7 0 chr13 46291275 46291582 -73453316 - AluJo SINE Alu -3 309 1 4518 64 7 7 chr13 46291606 46292201 -73452697 - L1PA7 LINE L1 -3 6151 5557 918 172 73 1 chr13 46292266 46292465 -73452433 + L1MA7 LINE L1 6031 6248 -43 2189 112 3 7 chr13 46292465 46292769 -73452129 + AluSq SINE Alu 1 303 -10 918 172 73 1 chr13 46292769 46292788 -73452110 + L1MA7 LINE L1 6248 6264 -27 334 224 20 68 chr13 46292820 46292967 -73451931 - L1MC4 LINE L1 -1339 6983 1925 1962 131 0 51 chr13 46292982 46293334 -73451564 - MER1B DNA MER1_type -5 334 1 1398 181 57 12 chr13 46294148 46294480 -73450418 - L1MC3 LINE L1 -18 7767 7421 401 200 90 0 chr13 46294525 46294625 -73450273 - L1MC3 LINE L1 -355 7430 7322 3854 157 88 13 chr13 46294644 46295470 -73449428 - L1MC1 LINE L1 -7 6326 5439 4289 203 59 32 chr13 46295485 46296634 -73448264 - L1MC3 LINE L1 -627 7158 5979 2152 204 36 0 chr13 46296744 46297245 -73447653 - L1P LINE L1 -967 5179 4661 * 3229 126 38 2 chr13 46297241 46297796 -73447102 - L1PA8A LINE L1 -2413 3733 3159 10118 109 8 4 chr13 46297797 46299681 -73445217 + L1PA8A LINE L1 3730 5621 -510 1496 216 74 24 chr13 46300046 46300467 -73444431 + L1ME3 LINE L1 5484 5925 -237 506 217 22 109 chr13 46300541 46300808 -73444090 + L1ME3 LINE L1 5911 6154 -8 456 241 94 29 chr13 46300850 46301020 -73443878 + MIR SINE MIR 66 246 -16 237 195 39 91 chr13 46303146 46303223 -73441675 + MER91B DNA MER1_type 1 73 -117 691 88 0 0 chr13 46303967 46304069 -73440829 - MLT2C2 LTR ERVL -361 103 2 24 0 0 0 chr13 46304092 46304116 -73440782 + AT_rich Low_complexity Low_complexity 1 24 0 920 193 36 0 chr13 46305482 46305674 -73439224 + MER3 DNA MER1_type 6 204 -5 26 0 0 0 chr13 46306053 46306079 -73438819 + AT_rich Low_complexity Low_complexity 1 26 0 976 282 90 40 chr13 46306395 46306903 -73437995 - L2 LINE L2 -3 3310 2777 2013 262 75 35 chr13 46306960 46307768 -73437130 - L2 LINE L2 -1185 2129 1289 257 366 88 16 chr13 46308508 46308814 -73436084 - L2 LINE L2 -947 2367 2040 559 277 31 65 chr13 46308889 46309181 -73435717 + MLT1I LTR MaLR 108 389 -20 525 296 66 10 chr13 46309773 46310013 -73434885 + MIR SINE MIR 9 260 -2 460 76 0 15 chr13 46310164 46310230 -73434668 - AluSc SINE Alu -14 295 231 245 282 14 0 chr13 46311445 46311516 -73433382 - MLT1J1 LTR MaLR 0 446 375 704 274 193 16 chr13 46311673 46311979 -73432919 + LTR16A LTR ERVL 90 449 -1 236 324 111 11 chr13 46312002 46312114 -73432784 - MLT1J1 LTR MaLR -230 220 98 26 0 0 0 chr13 46312798 46312824 -73432074 + AT_rich Low_complexity Low_complexity 1 26 0 1683 176 7 0 chr13 46313149 46313428 -73431470 - AluJb SINE Alu -31 281 1 204 290 29 0 chr13 46314119 46314188 -73430710 + (TTTA)n Simple_repeat Simple_repeat 4 74 0 331 277 80 66 chr13 46314198 46314335 -73430563 + L2 LINE L2 3171 3309 -4 449 268 129 21 chr13 46314346 46314540 -73430358 + MLT1J LTR MaLR 1 215 -296 678 279 105 0 chr13 46314637 46314856 -73430042 - L1ME3 LINE L1 -15 6147 5906 343 205 24 34 chr13 46314857 46315002 -73429896 - LTR50 LTR ERVL -2 793 637 378 285 36 54 chr13 46315276 46315497 -73429401 - LTR41 LTR ERVL -556 217 1 401 252 58 101 chr13 46315517 46315775 -73429123 + MLT1J LTR MaLR 221 467 -44 428 297 78 14 chr13 46316522 46316741 -73428157 - L1ME3 LINE L1 -823 5323 5091 215 349 97 67 chr13 46317586 46318034 -73426864 - L2 LINE L2 -107 3165 2698 2493 68 7 0 chr13 46318182 46318491 -73426407 + AluY SINE Alu 1 311 0 364 280 136 0 chr13 46319009 46319141 -73425757 + MIR SINE MIR 113 262 0 294 29 0 0 chr13 46319472 46319507 -73425391 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 198 71 0 0 chr13 46319508 46319536 -73425362 + (CCTA)n Simple_repeat Simple_repeat 1 28 0 2223 97 24 0 chr13 46319555 46319844 -73425054 + AluSx SINE Alu 1 296 -16 340 325 65 32 chr13 46320725 46320879 -73424019 - MIR SINE MIR -71 191 33 25 65 0 0 chr13 46320933 46320979 -73423919 + AT_rich Low_complexity Low_complexity 1 46 0 472 270 97 26 chr13 46321759 46322026 -73422872 - L1ME4a LINE L1 -254 5867 5582 973 138 0 0 chr13 46322797 46322967 -73421931 + AluSg/x SINE Alu 145 314 0 339 257 120 2 chr13 46322974 46323160 -73421738 + L1ME LINE L1 642 868 -5234 * 433 226 0 0 chr13 46323155 46323261 -73421637 + L1M4 LINE L1 4465 4570 -1576 1844 280 81 15 chr13 46323300 46323905 -73420993 + L1MDa LINE L1 18 839 -5701 1396 196 33 6 chr13 46323920 46324252 -73420646 + L1MDa LINE L1 1831 2171 -4369 1155 218 66 36 chr13 46324773 46325213 -73419685 + L1MDa LINE L1 2153 2605 -3935 23 0 0 0 chr13 46325370 46325393 -73419505 + AT_rich Low_complexity Low_complexity 1 23 0 377 99 84 28 chr13 46325413 46325484 -73419414 + L1MA1 LINE L1 6228 6302 0 260 200 0 0 chr13 46325500 46325545 -73419353 - L1MA2 LINE L1 -84 6220 6176 436 133 0 0 chr13 46325646 46325721 -73419177 + L1MA2 LINE L1 6230 6304 0 4778 116 18 11 chr13 46325734 46326499 -73418399 - L1MA2 LINE L1 -84 6220 5450 7019 224 13 6 chr13 46326625 46328454 -73416444 + L1MB7 LINE L1 1883 3714 -2432 962 135 0 29 chr13 46328454 46328624 -73416274 - L1 LINE L1 -1472 4674 4510 1779 202 106 19 chr13 46328633 46328717 -73416181 + L1P LINE L1 4454 4529 -1617 2052 132 0 0 chr13 46328717 46329006 -73415892 - AluSx SINE Alu -23 289 1 1779 202 106 19 chr13 46329006 46329291 -73415607 + L1MB7 LINE L1 4529 4883 -1263 297 0 0 0 chr13 46329291 46329324 -73415574 + (TG)n Simple_repeat Simple_repeat 2 34 0 1779 202 106 19 chr13 46329324 46329473 -73415425 + L1MB7 LINE L1 4883 5018 -1128 189 329 29 50 chr13 46329834 46329974 -73414924 + MIR SINE MIR 39 175 -87 1003 201 169 19 chr13 46329986 46330297 -73414601 + MER47B DNA MER2_type 1 417 -1 1545 202 3 7 chr13 46330371 46330663 -73414235 + AluJb SINE Alu 1 291 -21 1490 173 189 70 chr13 46331385 46331649 -73413249 - MLT1D LTR MaLR 0 505 274 2136 114 0 25 chr13 46331649 46331964 -73412934 + AluSx SINE Alu 1 307 -5 1490 173 189 70 chr13 46331964 46332144 -73412754 - MLT1D LTR MaLR -231 274 8 587 139 14 0 chr13 46332712 46332817 -73412081 - L1MA9 LINE L1 -210 5946 5839 245 235 0 0 chr13 46332816 46332867 -73412031 + L1P LINE L1 4930 4980 -1166 * 2122 68 79 7 chr13 46333233 46333513 -73411385 - AluY SINE Alu -11 300 1 1082 224 102 41 chr13 46336714 46337009 -73407889 + MLT1A1 LTR MaLR 1 313 -52 5501 104 10 2 chr13 46337018 46337819 -73407079 - L1PA15 LINE L1 -21 6144 5338 383 281 228 5 chr13 46337827 46338051 -73406847 - L2 LINE L2 -606 2708 2435 281 266 46 37 chr13 46338622 46338731 -73406167 - L2 LINE L2 -1067 2247 2138 703 302 43 47 chr13 46339126 46339696 -73405202 + L1MB7 LINE L1 5310 5890 -294 417 141 0 0 chr13 46340885 46340956 -73403942 + (TG)n Simple_repeat Simple_repeat 2 72 0 429 348 0 0 chr13 46341570 46341711 -73403187 + (TG)n Simple_repeat Simple_repeat 2 142 0 610 93 0 56 chr13 46342275 46342383 -73402515 + L1PA2 LINE L1 6054 6155 0 197 192 0 19 chr13 46343019 46343071 -73401827 + (TAA)n Simple_repeat Simple_repeat 2 52 0 867 242 27 7 chr13 46343077 46343280 -73401618 - MIR SINE MIR -46 216 18 2061 113 35 0 chr13 46344768 46345050 -73399848 + AluSg SINE Alu 1 292 -18 24 0 0 0 chr13 46345765 46345789 -73399109 + AT_rich Low_complexity Low_complexity 1 24 0 692 269 69 29 chr13 46346243 46346618 -73398280 + L1M4 LINE L1 4968 5357 -789 372 296 94 5 chr13 46346659 46346862 -73398036 + L1ME3A LINE L1 5064 5284 -862 290 111 95 0 chr13 46346876 46346939 -73397959 + L1MC2 LINE L1 6275 6343 -1 186 43 0 0 chr13 46346942 46346965 -73397933 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 305 218 35 23 chr13 46346969 46347056 -73397842 + L1P LINE L1 5311 5398 -768 * 1288 99 0 0 chr13 46347052 46347233 -73397665 - L1PA8 LINE L1 -1158 4988 4808 6890 61 3 6 chr13 46347235 46348401 -73396497 + L1PA8 LINE L1 4990 6155 -17 1437 233 126 28 chr13 46348478 46349087 -73395811 + L1ME3A LINE L1 5453 6143 -21 1744 185 47 31 chr13 46349657 46350079 -73394819 - L1MA10 LINE L1 -12 6322 5894 269 289 12 12 chr13 46350439 46350522 -73394376 + CT-rich Low_complexity Low_complexity 3 85 0 192 391 76 60 chr13 46351198 46351382 -73393516 + L2 LINE L2 3007 3193 -79 1813 206 122 4 chr13 46352026 46352478 -73392420 + MLT1D LTR MaLR 1 505 0 234 0 0 0 chr13 46352678 46352704 -73392194 + (TTA)n Simple_repeat Simple_repeat 2 27 0 389 319 37 15 chr13 46353831 46353966 -73390932 + MIR3 SINE MIR 11 148 -60 273 327 96 0 chr13 46354341 46354445 -73390453 + MIR SINE MIR 19 132 -130 237 169 0 0 chr13 46354800 46354859 -73390039 + CT-rich Low_complexity Low_complexity 2 60 0 363 44 0 0 chr13 46354861 46354906 -73389992 + (CA)n Simple_repeat Simple_repeat 1 45 0 317 290 48 8 chr13 46355215 46355334 -73389564 - MIR SINE MIR -56 152 40 1928 250 62 7 chr13 46355805 46356369 -73388529 + L1M4 LINE L1 4557 5151 -995 1837 179 62 89 chr13 46356516 46357030 -73387868 - MLT1D LTR MaLR 0 505 6 21 0 0 0 chr13 46358315 46358336 -73386562 + AT_rich Low_complexity Low_complexity 1 21 0 346 321 0 0 chr13 46359442 46359554 -73385344 - MIR SINE MIR 0 262 151 302 316 21 0 chr13 46361201 46361296 -73383602 - MIR SINE MIR -50 212 116 807 318 26 0 chr13 46361371 46361604 -73383294 + MIR SINE MIR 11 249 -13 251 291 137 8 chr13 46361643 46361760 -73383138 + L2 LINE L2 3167 3298 -15 517 240 124 46 chr13 46362685 46362902 -73381996 - MIR SINE MIR -12 250 17 1343 132 42 68 chr13 46363284 46363549 -73381349 - MSTA LTR MaLR -1 427 170 882 83 0 0 chr13 46363549 46363658 -73381240 + AluY SINE Alu 1 109 -202 578 67 0 11 chr13 46363658 46363773 -73381125 + Alu SINE Alu 224 312 0 873 121 150 0 chr13 46363773 46363913 -73380985 - MSTA LTR MaLR -250 178 18 314 395 107 11 chr13 46364157 46364420 -73380478 - L2 LINE L2 0 3272 2985 530 94 7 17 chr13 46364692 46364825 -73380073 + L1M2 LINE L1 5326 5452 -704 634 314 181 13 chr13 46365037 46365419 -73379479 + LTR33 LTR ERVL 76 521 0 266 380 38 20 chr13 46365604 46365774 -73379124 - MIR SINE MIR -75 187 7 243 389 94 7 chr13 46366155 46366304 -73378594 - MIR SINE MIR -75 187 26 2541 53 0 0 chr13 46366664 46366966 -73377932 - AluY SINE Alu -9 302 1 4665 175 47 17 chr13 46367173 46368214 -73376684 + L1MA8 LINE L1 5216 6286 -5 2049 239 70 31 chr13 46368254 46369289 -73375609 + L1ME3 LINE L1 4501 5583 -579 1126 161 0 0 chr13 46369296 46369489 -73375409 + L1PB1 LINE L1 8 200 -6663 4256 122 59 8 chr13 46369491 46370632 -73374266 + L1PB1 LINE L1 636 1978 -4885 1604 164 8 109 chr13 46370632 46371028 -73373870 + LTR8 LTR ERV1 1 356 -335 4223 190 26 8 chr13 46371162 46372066 -73372832 + L1 LINE L1 3495 4415 -1731 1298 206 18 0 chr13 46372077 46372358 -73372540 + L1PB1 LINE L1 2951 3236 -3626 * 4910 148 12 69 chr13 46372348 46374099 -73370799 + L1PB1 LINE L1 5132 6797 -70 731 250 31 35 chr13 46374083 46374311 -73370587 + L1ME3 LINE L1 5849 6075 -87 * 460 202 0 11 chr13 46374527 46374621 -73370277 + MLT1A1 LTR MaLR 1 93 -272 1574 139 37 29 chr13 46374721 46374789 -73370109 + MLT1A1 LTR MaLR 91 157 -208 1492 119 163 16 chr13 46374789 46375041 -73369857 + AluSg1 SINE Alu 1 289 -20 1574 139 37 29 chr13 46375041 46375245 -73369653 + MLT1A1 LTR MaLR 157 365 0 2204 92 0 7 chr13 46375322 46375606 -73369292 + AluY SINE Alu 1 282 -29 28 0 0 0 chr13 46375614 46375642 -73369256 + AT_rich Low_complexity Low_complexity 1 28 0 383 88 63 38 chr13 46375873 46375994 -73368904 + (TA)n Simple_repeat Simple_repeat 1 128 -35 1148 171 45 0 chr13 46375994 46376193 -73368705 + MER6B DNA MER2_type 3 210 0 383 88 63 38 chr13 46376193 46376230 -73368668 + (TA)n Simple_repeat Simple_repeat 128 163 0 192 40 0 0 chr13 46376610 46376635 -73368263 + (CA)n Simple_repeat Simple_repeat 2 26 0 271 217 214 67 chr13 46376635 46376760 -73368138 - L1ME4a LINE L1 -19 6102 5997 1529 170 41 52 chr13 46376760 46377125 -73367773 - MLT1A1 LTR MaLR -4 361 1 271 217 214 67 chr13 46377125 46377340 -73367558 - L1ME4a LINE L1 -124 5997 5712 267 263 0 0 chr13 46377538 46377595 -73367303 - L2 LINE L2 -6 3307 3251 24 0 0 0 chr13 46378731 46378755 -73366143 + AT_rich Low_complexity Low_complexity 1 24 0 2003 140 17 10 chr13 46379991 46380291 -73364607 - AluSx SINE Alu -10 302 1 225 320 117 10 chr13 46380617 46380720 -73364178 - MIR3 SINE MIR -52 156 43 203 375 0 14 chr13 46381885 46381957 -73362941 + MIR SINE MIR 37 107 -155 2635 113 15 0 chr13 46382476 46382866 -73362032 + L1PA15 LINE L1 5768 6163 -2 4714 260 68 31 chr13 46382927 46384984 -73359914 - L1MEc LINE L1 -4228 2168 37 1012 233 141 98 chr13 46387167 46387536 -73357362 + MLT1G LTR MaLR 1 385 -210 410 206 88 101 chr13 46387537 46387765 -73357133 + L1M4 LINE L1 4895 5119 -1027 691 188 111 0 chr13 46388001 46388162 -73356736 + L1ME1 LINE L1 5999 6184 0 22 35 0 0 chr13 46388303 46388332 -73356566 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 46388666 46388694 -73356204 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr13 46389524 46389551 -73355347 + (A)n Simple_repeat Simple_repeat 1 27 0 2058 122 7 3 chr13 46389610 46389913 -73354985 - AluSx SINE Alu -8 304 1 398 340 49 12 chr13 46390000 46390162 -73354736 + MIR3 SINE MIR 16 183 -25 212 206 147 98 chr13 46390570 46390672 -73354226 - MIR SINE MIR -31 231 125 448 345 20 35 chr13 46390696 46390893 -73354005 - MIR3 SINE MIR -12 196 3 188 45 0 0 chr13 46391761 46391783 -73353115 + (T)n Simple_repeat Simple_repeat 1 22 0 7071 82 10 1 chr13 46391887 46392929 -73351969 - L1P LINE L1 -727 5428 4380 202 214 0 143 chr13 46393093 46393191 -73351707 + MIR SINE MIR 35 118 -144 619 293 83 9 chr13 46393541 46393770 -73351128 - MIR SINE MIR -6 256 11 819 324 136 23 chr13 46394149 46394455 -73350443 + L3 LINE CR1 317 690 -887 2439 113 28 22 chr13 46394455 46394817 -73350081 + THE1B LTR MaLR 1 364 0 819 324 136 23 chr13 46394817 46394952 -73349946 + L3 LINE CR1 690 808 -769 317 340 10 0 chr13 46394961 46395061 -73349837 + L3 LINE CR1 1290 1390 -187 263 102 0 20 chr13 46396779 46396828 -73348070 + (TA)n Simple_repeat Simple_repeat 2 49 0 474 300 131 45 chr13 46396955 46397247 -73347651 + L1MEd LINE L1 789 1129 -4990 2315 76 3 3 chr13 46397247 46397550 -73347348 - AluY SINE Alu -8 303 1 474 300 131 45 chr13 46397550 46397677 -73347221 + L1MEd LINE L1 1129 1244 -4875 1373 222 7 7 chr13 46397914 46398198 -73346700 - AluJo SINE Alu -28 284 1 21 0 0 0 chr13 46398298 46398319 -73346579 + AT_rich Low_complexity Low_complexity 1 21 0 188 192 11 62 chr13 46398538 46398715 -73346183 + (CATATA)n Simple_repeat Simple_repeat 6 173 0 216 260 178 14 chr13 46399798 46399871 -73345027 - L2 LINE L2 0 3313 3229 22 0 0 0 chr13 46400555 46400577 -73344321 + AT_rich Low_complexity Low_complexity 1 22 0 562 214 24 8 chr13 46402715 46402841 -73342057 + MIR SINE MIR 79 206 -56 237 65 0 0 chr13 46402993 46403024 -73341874 + (CATA)n Simple_repeat Simple_repeat 2 32 0 274 291 23 0 chr13 46403610 46403696 -73341202 - MER103 DNA DNA -33 133 46 2366 171 60 50 chr13 46405697 46406212 -73338686 + MLT2B1 LTR ERVL 1 520 0 10708 131 11 1 chr13 46406998 46408710 -73336188 - L1PA8A LINE L1 -1377 4769 3041 3791 96 34 26 chr13 46408707 46409426 -73335472 + L1PA8A LINE L1 4781 5487 -644 * 1673 145 37 7 chr13 46410348 46410644 -73334254 - L1PB4 LINE L1 -2 6154 5850 813 194 78 0 chr13 46410645 46410836 -73334062 - L1 LINE L1 -2490 3656 3451 317 314 29 9 chr13 46411977 46412082 -73332816 + MIR SINE MIR 40 146 -62 1847 193 13 80 chr13 46412093 46412381 -73332517 + L1M4 LINE L1 4783 5022 -1124 2627 30 0 0 chr13 46412381 46412676 -73332222 + AluYb8 SINE Alu 22 316 -2 1847 193 13 80 chr13 46412676 46412910 -73331988 + L1M4 LINE L1 5022 5270 -876 2326 109 14 3 chr13 46413315 46413665 -73331233 - L1PB1 LINE L1 0 6151 5798 2163 86 4 4 chr13 46414061 46414362 -73330536 + AluSc SINE Alu 3 303 0 1901 158 32 16 chr13 46414988 46415298 -73329600 - 7SLRNA srpRNA srpRNA -5 315 1 2259 118 0 0 chr13 46417200 46417506 -73327392 + AluSg SINE Alu 1 306 -4 270 0 0 0 chr13 46417827 46417857 -73327041 + (T)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr13 46418254 46418277 -73326621 + AT_rich Low_complexity Low_complexity 1 23 0 3135 81 45 0 chr13 46418465 46418883 -73326015 - LTR3b LTR ERVK 0 437 1 234 264 111 0 chr13 46419048 46419120 -73325778 - MIR SINE MIR -116 146 67 4569 145 6 4 chr13 46419340 46420069 -73324829 + L1P3 LINE L1 2 731 -5144 254 190 35 0 chr13 46421054 46421112 -73323786 + LTR61 LTR ERV1 218 277 -318 1400 174 42 122 chr13 46422412 46422815 -73322083 + MER67D LTR ERV1 1 371 -143 888 157 220 0 chr13 46422830 46423021 -73321877 - Tigger3(Golem) DNA MER2_type -35 2994 2762 4673 24 0 0 chr13 46423021 46423561 -73321337 + L1PA4 LINE L1 5506 6045 -110 7902 135 9 14 chr13 46423664 46426097 -73318801 - L1P LINE L1 -2249 3897 1407 1425 215 3 14 chr13 46426209 46426493 -73318405 - AluJo SINE Alu -31 281 1 4043 150 10 46 chr13 46426493 46427304 -73317594 - L1 LINE L1 -870 5276 4495 3637 226 113 57 chr13 46427305 46428773 -73316125 - L1 LINE L1 -2372 3774 2224 37412 34 1 0 chr13 46428884 46434195 -73310703 + L1PA3 LINE L1 838 6153 -2 736 158 19 6 chr13 46434191 46434349 -73310549 + L1MD1 LINE L1 5283 5442 -917 * 1620 164 26 3 chr13 46434350 46434655 -73310243 + L1MC1 LINE L1 6017 6328 -5 19995 200 32 55 chr13 46434677 46435498 -73309400 + L1MA2 LINE L1 22 860 -6705 1914 129 18 4 chr13 46435498 46435776 -73309122 - AluSx SINE Alu -30 282 1 19995 200 32 55 chr13 46435776 46440190 -73304708 + L1MA2 LINE L1 860 5314 -2251 1290 128 10 15 chr13 46440190 46440386 -73304512 - AluY SINE Alu -17 294 100 19995 200 32 55 chr13 46440386 46440896 -73304002 + L1MA2 LINE L1 5314 5834 -1731 876 125 7 0 chr13 46440892 46441036 -73303862 + L1MA2 LINE L1 6077 6221 -1344 * 4907 111 18 5 chr13 46441138 46441916 -73302982 + L1MA2 LINE L1 6936 7723 0 2921 197 32 65 chr13 46441936 46442098 -73302800 + L1MD1 LINE L1 5444 5610 -632 2261 108 3 3 chr13 46442098 46442403 -73302495 + AluSx SINE Alu 1 305 -7 2921 197 32 65 chr13 46442403 46442616 -73302282 + L1MD1 LINE L1 5610 5828 -414 2545 132 31 24 chr13 46442616 46443041 -73301857 - MSTA LTR MaLR 0 428 1 2921 197 32 65 chr13 46443041 46443360 -73301538 + L1MD1 LINE L1 5828 6112 -130 336 94 0 0 chr13 46443360 46443413 -73301485 + L1MA9 LINE L1 6259 6311 -1 2921 197 32 65 chr13 46443413 46443522 -73301376 + L1MD1 LINE L1 6112 6223 -19 324 0 0 0 chr13 46443746 46443782 -73301116 + (TG)n Simple_repeat Simple_repeat 2 37 0 493 325 16 31 chr13 46444472 46444666 -73300232 + MIR SINE MIR 3 193 -69 225 65 0 0 chr13 46445184 46445215 -73299683 + (CA)n Simple_repeat Simple_repeat 1 31 0 277 240 264 31 chr13 46445620 46445749 -73299149 + MIR SINE MIR 2 160 -102 1615 194 0 14 chr13 46445813 46446096 -73298802 - AluJo SINE Alu -31 281 3 491 303 28 17 chr13 46446113 46446291 -73298607 - MIR SINE MIR -14 248 69 2122 135 0 0 chr13 46448523 46448819 -73296079 + AluSg SINE Alu 1 296 -14 452 267 272 15 chr13 46448827 46449022 -73295876 - MIR SINE MIR -8 254 10 3169 228 61 15 chr13 46449353 46451510 -73293388 - L1MB8 LINE L1 -28 6150 3854 286 290 11 86 chr13 46451548 46451734 -73293164 - L1MA10 LINE L1 -18 6316 6145 9578 177 44 31 chr13 46451738 46453156 -73291742 + L1MA7 LINE L1 2998 4396 -1895 245 29 29 0 chr13 46453156 46453190 -73291708 + (TA)n Simple_repeat Simple_repeat 2 36 0 9578 177 44 31 chr13 46453190 46455014 -73289884 + L1MA7 LINE L1 4396 6285 -6 1390 192 17 10 chr13 46455026 46455317 -73289581 - L1MA9 LINE L1 -164 6148 5856 4696 240 62 14 chr13 46455319 46456704 -73288194 - L1MB8 LINE L1 -2286 3860 2379 2009 147 0 0 chr13 46456704 46457037 -73287861 - AluSq SINE Alu 0 333 1 4696 240 62 14 chr13 46457037 46457314 -73287584 - L1MB8 LINE L1 -3767 2379 2117 6182 73 13 4 chr13 46457390 46458222 -73286676 - L1PA7 LINE L1 -4 6150 5311 4712 191 24 21 chr13 46458447 46458805 -73286093 + L1MA4 LINE L1 4686 5042 -1258 423 139 13 0 chr13 46458805 46458884 -73286014 + MADE1 DNA Mariner 1 80 0 4712 191 24 21 chr13 46458884 46460088 -73284810 + L1MA4 LINE L1 5042 6217 -83 232 225 70 0 chr13 46460400 46460471 -73284427 + L1MA4 LINE L1 6203 6278 -22 7881 144 45 6 chr13 46460497 46462176 -73282722 - Tigger4(Zombi) DNA MER2_type -950 1781 28 2162 237 61 65 chr13 46462188 46462436 -73282462 - L1M4c LINE L1 -4414 2411 2164 2594 26 7 7 chr13 46462436 46462740 -73282158 - AluY SINE Alu -7 304 1 2162 237 61 65 chr13 46462740 46463483 -73281415 - L1M4c LINE L1 -4661 2164 1285 1535 201 3 31 chr13 46463483 46463771 -73281127 + AluJb SINE Alu 3 282 -30 2162 237 61 65 chr13 46463771 46464143 -73280755 - L1M4c LINE L1 -5540 1285 913 353 314 21 7 chr13 46464146 46464286 -73280612 - L1M4c LINE L1 -4711 1935 1794 2546 251 61 35 chr13 46464292 46465128 -73279770 - L1M4c LINE L1 -5639 903 46 341 164 27 55 chr13 46465700 46465773 -73279125 + MLT1A2 LTR MaLR 1 63 -311 180 278 111 0 chr13 46466855 46466927 -73277971 + MIR SINE MIR 54 133 -75 522 318 71 62 chr13 46466930 46467383 -73277515 - LTR67 LTR ERVL -57 500 44 1676 181 7 0 chr13 46469751 46470043 -73274855 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr13 46471564 46471588 -73273310 + AT_rich Low_complexity Low_complexity 1 24 0 1200 165 238 36 chr13 46472968 46473271 -73271627 - THE1B LTR MaLR 0 364 1 359 304 219 0 chr13 46473276 46473477 -73271421 - L2 LINE L2 -920 2394 2150 251 299 75 124 chr13 46474032 46474500 -73270398 + L2 LINE L2 2828 3272 0 184 274 0 59 chr13 46474652 46474703 -73270195 - L2 LINE L2 -15 3257 3210 * 680 250 50 6 chr13 46474672 46474852 -73270046 - MIR SINE MIR -26 236 49 456 19 0 0 chr13 46475004 46475057 -73269841 + (CA)n Simple_repeat Simple_repeat 2 54 0 272 70 23 0 chr13 46475926 46475969 -73268929 + (TG)n Simple_repeat Simple_repeat 1 44 0 24 32 0 0 chr13 46476895 46476926 -73267972 + AT_rich Low_complexity Low_complexity 1 31 0 318 217 0 17 chr13 46476942 46477002 -73267896 - L2 LINE L2 -6 3266 3208 242 345 46 0 chr13 46477216 46477303 -73267595 - MIR SINE MIR -152 110 20 405 287 43 19 chr13 46477592 46477801 -73267097 - L1M4 LINE L1 -2145 4001 3788 270 325 0 88 chr13 46478087 46478201 -73266697 + MER5B DNA MER1_type 1 104 -74 1479 132 5 0 chr13 46478203 46478415 -73266483 + AluSx SINE Alu 1 213 -99 502 117 0 26 chr13 46478462 46478574 -73266324 + AluSx SINE Alu 206 315 0 376 288 58 37 chr13 46478765 46478956 -73265942 + L2 LINE L2 3114 3308 -5 218 336 132 28 chr13 46529149 46529399 -73215499 - L2 LINE L2 -571 2743 2468 280 103 0 46 chr13 46530011 46530066 -73214832 + FLAM SINE Alu 87 133 0 511 250 27 79 chr13 46530201 46530529 -73214369 + L1ME4a LINE L1 5562 5872 -249 206 225 0 0 chr13 46530564 46530604 -73214294 - L2 LINE L2 -16 3297 3258 183 184 0 0 chr13 46530660 46530698 -73214200 + (TA)n Simple_repeat Simple_repeat 1 38 0 358 241 90 0 chr13 46530736 46530869 -73214029 + L1ME4a LINE L1 5975 6119 -2 217 310 0 0 chr13 46531626 46531697 -73213201 - MIR SINE MIR -108 154 84 248 260 240 34 chr13 46531809 46531955 -73212943 - MIR SINE MIR -20 242 67 500 164 10 10 chr13 46532403 46532507 -73212391 - Charlie5 DNA MER1_type 0 2621 2518 1077 245 0 0 chr13 46532529 46532729 -73212169 - MER8 DNA MER2_type 0 239 40 966 99 0 14 chr13 46532740 46532881 -73212017 + MLT2A2 LTR ERVL 315 453 0 691 345 47 21 chr13 46533380 46533762 -73211136 - L1M3c LINE L1 -5749 392 1 472 205 58 85 chr13 46534368 46534592 -73210306 + L1M1 LINE L1 3307 3524 -4041 * 1598 279 73 41 chr13 46534563 46535684 -73209214 + L1MEc LINE L1 541 1732 -4664 416 306 19 6 chr13 46535727 46535884 -73209014 - L1ME1 LINE L1 -63 6103 5945 282 352 39 15 chr13 46535999 46536150 -73208748 - MIR3 SINE MIR -48 160 4 201 183 28 28 chr13 46536489 46536560 -73208338 + (TA)n Simple_repeat Simple_repeat 1 71 0 1367 211 116 22 chr13 46537283 46537653 -73207245 - MLT1D LTR MaLR -72 433 29 485 231 130 6 chr13 46538507 46538676 -73206222 - MER20 DNA MER1_type 0 219 30 225 163 0 0 chr13 46538733 46538782 -73206116 + (TA)n Simple_repeat Simple_repeat 1 49 0 387 261 111 85 chr13 46538825 46539331 -73205567 + L1ME4a LINE L1 5395 5913 -208 1971 101 4 8 chr13 46540920 46541188 -73203710 - AluSx SINE Alu -15 297 31 727 130 0 0 chr13 46541188 46541288 -73203610 - LTR12 LTR ERV1 0 714 615 249 265 31 20 chr13 46541291 46541389 -73203509 - LTR30 LTR ERV1 -80 642 544 1406 97 220 0 chr13 46541389 46541616 -73203282 - LTR12 LTR ERV1 -437 277 1 5468 107 7 1 chr13 46541616 46542390 -73202508 - HERV9 LTR ERV1 0 8399 7622 1339 194 22 19 chr13 46542997 46543265 -73201633 + AluJo SINE Alu 1 269 -43 640 339 60 39 chr13 46543333 46543716 -73201182 + L2 LINE L2 2433 2823 -491 2089 189 63 39 chr13 46544876 46545369 -73199529 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr13 46546414 46546435 -73198463 + AT_rich Low_complexity Low_complexity 1 21 0 1698 181 59 43 chr13 46548168 46548539 -73196359 + L1MCa LINE L1 47 423 -6003 5031 144 28 95 chr13 46548542 46548772 -73196126 + L1MCa LINE L1 597 841 -5586 2041 118 4 0 chr13 46548772 46549076 -73195822 + AluSx SINE Alu 1 305 0 5031 144 28 95 chr13 46549076 46549114 -73195784 + L1MCa LINE L1 841 880 -5547 1380 174 85 26 chr13 46549114 46549384 -73195514 - AluJo SINE Alu -22 290 5 5031 144 28 95 chr13 46549384 46550308 -73194590 + L1MCa LINE L1 880 2154 -4273 897 170 80 48 chr13 46550313 46550435 -73194463 + L1MCa LINE L1 2053 2170 -4256 1818 155 0 11 chr13 46550435 46550712 -73194186 + AluSx SINE Alu 20 293 -19 897 170 80 48 chr13 46550712 46550878 -73194020 + L1MCa LINE L1 2170 2350 -4076 * 3230 154 26 53 chr13 46550860 46551022 -73193876 + L1PBa LINE L1 1 166 -6697 4351 25 4 2 chr13 46551022 46551537 -73193361 + L1PA3 LINE L1 5640 6155 0 3230 154 26 53 chr13 46551537 46551557 -73193341 + L1PBa LINE L1 166 185 -6678 2082 131 13 0 chr13 46551557 46551863 -73193035 + AluSg SINE Alu 1 310 0 3230 154 26 53 chr13 46551863 46552303 -73192595 + L1PBa LINE L1 185 607 -6256 * 4366 124 29 17 chr13 46552300 46553057 -73191841 + L1PBa LINE L1 1316 2081 -4782 2481 206 30 13 chr13 46553063 46553090 -73191808 + L1MCa LINE L1 2700 2725 -3701 198 0 0 0 chr13 46553090 46553112 -73191786 + (TA)n Simple_repeat Simple_repeat 2 23 0 2481 206 30 13 chr13 46553112 46553682 -73191216 + L1MCa LINE L1 2725 3307 -3119 1808 137 3 0 chr13 46553682 46553998 -73190900 + L1PB1 LINE L1 5393 5746 -405 * 8300 105 10 21 chr13 46553983 46555283 -73189615 - L1P LINE L1 -2938 3208 1924 3529 79 28 1 chr13 46555275 46557472 -73187426 + L1PA7 LINE L1 3779 6150 -4 * 2448 116 0 79 chr13 46557489 46557930 -73186968 + L1PB1 LINE L1 5737 6142 -9 2850 256 37 16 chr13 46557995 46558956 -73185942 + L1MC1 LINE L1 2153 3097 -3118 5170 174 44 29 chr13 46558970 46559736 -73185162 + L1MC1 LINE L1 5014 5812 -590 826 126 15 0 chr13 46559736 46559871 -73185027 - MER85 DNA T2_type -1 138 2 5170 174 44 29 chr13 46559871 46560458 -73184440 + L1MC1 LINE L1 5812 6389 -13 3256 140 75 15 chr13 46560482 46561083 -73183815 + MER67C LTR ERV1 74 710 0 727 324 137 26 chr13 46561874 46562674 -73182224 - L2 LINE L2 -31 3282 2405 227 241 181 0 chr13 46565290 46565373 -73179525 + L2 LINE L2 3204 3301 -12 1031 237 57 0 chr13 46567337 46567548 -73177350 - MER58A DNA MER1_type 0 224 2 332 240 62 10 chr13 46567752 46567848 -73177050 + ERVL LTR ERVL 1263 1363 -3633 275 341 37 27 chr13 46567851 46568214 -73176684 + ERVL LTR ERVL 4792 5200 -454 920 292 71 19 chr13 46568531 46568856 -73176042 + LTR16A LTR ERVL 96 437 -13 199 317 37 0 chr13 46568890 46568972 -73175926 + MIR SINE MIR 112 196 -66 1391 248 148 12 chr13 46569258 46569738 -73175160 - HsTC2 DNA Tc2 -86 1812 1268 575 243 68 0 chr13 46569867 46570015 -73174883 + MIR SINE MIR 105 262 0 1938 167 73 6 chr13 46570990 46571180 -73173718 - MLT1A1 LTR MaLR 0 365 189 2510 69 0 0 chr13 46571180 46571484 -73173414 - AluY SINE Alu -7 304 1 1938 167 73 6 chr13 46571484 46571634 -73173264 - MLT1A1 LTR MaLR -176 189 2 236 213 113 107 chr13 46574278 46574428 -73170470 - Charlie8 DNA MER1_type -2240 177 27 21 0 0 0 chr13 46574511 46574532 -73170366 + AT_rich Low_complexity Low_complexity 1 21 0 1150 229 152 9 chr13 46574913 46575241 -73169657 - LOR1b LTR ERV1 -8 453 79 234 167 0 0 chr13 46575233 46575269 -73169629 - LOR1a LTR ERV1 -461 36 1 * 259 327 53 53 chr13 46575694 46575844 -73169054 - MIR3 SINE MIR -55 153 4 2113 138 7 0 chr13 46576572 46576876 -73168022 - AluSx SINE Alu -6 306 1 244 274 132 61 chr13 46577147 46577344 -73167554 + LTR16A LTR ERVL 10 220 -230 * 324 93 0 0 chr13 46577342 46577385 -73167513 - MADE1 DNA Mariner -32 48 6 386 204 10 0 chr13 46577390 46577493 -73167405 + (TCTA)n Simple_repeat Simple_repeat 3 106 0 245 98 24 0 chr13 46577503 46577544 -73167354 + (TCTCCC)n Simple_repeat Simple_repeat 2 43 0 21 57 0 0 chr13 46578304 46578339 -73166559 + AT_rich Low_complexity Low_complexity 1 35 0 1102 261 160 7 chr13 46578554 46579191 -73165707 + L2 LINE L2 2566 3309 -4 300 264 150 61 chr13 46579286 46579358 -73165540 + L1MEd LINE L1 894 958 -5161 2349 86 0 7 chr13 46579358 46579660 -73165238 + AluSc SINE Alu 1 300 -9 300 264 150 61 chr13 46579660 46579867 -73165031 + L1MEd LINE L1 958 1198 -4921 192 191 0 0 chr13 46579922 46579935 -73164963 + A-rich Low_complexity Low_complexity 1 13 -29 1875 154 50 3 chr13 46579935 46580233 -73164665 + AluJb SINE Alu 1 312 0 192 191 0 0 chr13 46580233 46580261 -73164637 + A-rich Low_complexity Low_complexity 12 42 0 238 250 0 11 chr13 46580445 46580537 -73164361 + L1ME LINE L1 826 916 -5154 745 273 71 8 chr13 46580796 46581034 -73163864 - MLT1I LTR MaLR -59 350 98 1984 140 11 0 chr13 46582431 46582716 -73162182 + AluJo SINE Alu 6 293 -19 31973 107 18 57 chr13 46583869 46590274 -73154624 + L1PA7 LINE L1 12 6154 0 333 271 52 10 chr13 46590368 46590464 -73154434 + MIR SINE MIR 48 147 -115 843 170 7 0 chr13 46590630 46590765 -73154133 - Tigger3(Golem) DNA MER2_type -2 3027 2892 2088 125 0 0 chr13 46590768 46591083 -73153815 - AluSg SINE Alu 0 315 1 534 108 0 0 chr13 46591384 46591458 -73153440 + Tigger3(Golem) DNA MER2_type 2893 2966 -63 1020 104 45 0 chr13 46591463 46591617 -73153281 - Tigger3b DNA MER2_type -147 1084 924 2402 133 24 27 chr13 46591618 46591994 -73152904 + THE1C LTR MaLR 1 375 0 9859 125 13 64 chr13 46591994 46593659 -73151239 + THE1C-int LTR MaLR 1 1580 0 2309 130 15 56 chr13 46593659 46594050 -73150848 + THE1C LTR MaLR 1 375 0 3295 143 66 0 chr13 46594051 46594640 -73150258 - Tigger3b DNA MER2_type -309 922 295 6499 208 32 8 chr13 46594643 46596283 -73148615 + L1PA15 LINE L1 1 1451 -5398 2223 173 50 24 chr13 46596283 46596515 -73148383 - MSTA LTR MaLR 0 428 179 2159 110 0 23 chr13 46596515 46596815 -73148083 - AluSq SINE Alu -15 298 6 2223 173 50 24 chr13 46596815 46596999 -73147899 - MSTA LTR MaLR -249 179 1 9481 181 25 2 chr13 46596999 46598613 -73146285 - MSTA-int LTR MaLR 0 1651 1 2566 149 14 30 chr13 46598613 46598726 -73146172 - MSTA LTR MaLR 0 428 315 3184 186 25 73 chr13 46598726 46599452 -73145446 + LTR8 LTR ERV1 1 691 0 2566 149 14 30 chr13 46599452 46599773 -73145125 - MSTA LTR MaLR -113 315 1 9365 201 39 9 chr13 46599773 46601849 -73143049 + L1PA15 LINE L1 1447 3648 -3201 2074 118 0 0 chr13 46601849 46602129 -73142769 + AluSg SINE Alu 30 309 -1 9365 201 39 9 chr13 46602129 46603001 -73141897 + L1PA15 LINE L1 3648 4492 -2357 2029 234 18 4 chr13 46602991 46603492 -73141406 + L1PA15 LINE L1 5381 5888 -961 * 2857 90 3 3 chr13 46603505 46603860 -73141038 - THE1A LTR MaLR 0 355 1 12200 97 16 1 chr13 46603860 46605417 -73139481 - THE1A-int LTR MaLR 0 1580 1 2280 117 14 40 chr13 46605417 46605834 -73139064 - THE1A LTR MaLR 0 375 1 5426 138 22 18 chr13 46605849 46606757 -73138141 + L1PA15 LINE L1 5957 6868 0 1733 203 123 13 chr13 46606732 46607457 -73137441 + L1P LINE L1 4425 5408 -1441 * 1804 232 34 46 chr13 46607486 46608073 -73136825 + L1ME1 LINE L1 5585 6164 -2 205 267 79 30 chr13 46608827 46608928 -73135970 + L2 LINE L2 3161 3266 -47 411 284 71 7 chr13 46608934 46609089 -73135809 - MIR SINE MIR 0 262 98 867 215 6 12 chr13 46609230 46609393 -73135505 + FRAM SINE Alu 1 162 -4 207 69 0 0 chr13 46609885 46609914 -73134984 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr13 46610297 46610326 -73134572 + AT_rich Low_complexity Low_complexity 1 29 0 862 215 32 59 chr13 46610451 46610703 -73134195 - MLT1A1 LTR MaLR -8 420 115 2736 119 33 33 chr13 46610703 46611094 -73133804 - MSTA LTR MaLR 0 428 35 7315 50 15 1 chr13 46611094 46611961 -73132937 + L1PA5 LINE L1 5276 6154 0 2736 119 33 33 chr13 46611961 46611997 -73132901 - MSTA LTR MaLR -392 36 1 597 222 0 17 chr13 46611997 46612114 -73132784 - MLT1A1 LTR MaLR -312 116 2 8594 200 24 25 chr13 46612115 46613789 -73131109 - MLT1A1-int LTR MaLR 0 1735 64 1463 211 51 42 chr13 46613797 46614153 -73130745 - MLT1A1 LTR MaLR -6 359 1 319 300 71 36 chr13 46614514 46614654 -73130244 + L2 LINE L2 1845 1989 -1325 254 300 41 59 chr13 46614850 46615020 -73129878 + L2 LINE L2 2890 3056 -216 1956 208 126 26 chr13 46615022 46615521 -73129377 - MLT1H LTR MaLR 0 549 1 218 366 0 24 chr13 46615696 46615778 -73129120 + L2 LINE L2 3227 3306 -7 180 0 0 0 chr13 46615993 46616013 -73128885 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 2007 105 3 48 chr13 46616015 46616131 -73128767 - AluSx SINE Alu -30 282 162 3930 73 176 32 chr13 46616131 46616732 -73128166 + LTR12 LTR ERV1 1 688 0 2007 105 3 48 chr13 46616732 46616910 -73127988 - AluSx SINE Alu -150 162 1 2169 164 56 10 chr13 46619305 46619714 -73125184 + MSTA LTR MaLR 1 428 0 537 274 218 0 chr13 46619721 46619900 -73124998 - MIR SINE MIR -21 241 24 591 262 61 19 chr13 46620408 46620622 -73124276 - MLT1J2 LTR MaLR -227 223 1 590 231 82 0 chr13 46620624 46620758 -73124140 + MIR SINE MIR 72 216 -46 260 271 93 25 chr13 46620782 46620900 -73123998 - MIR SINE MIR -58 204 79 233 73 146 36 chr13 46620902 46620957 -73123941 - MLT2D LTR ERVL 0 464 404 2288 69 0 75 chr13 46620970 46621303 -73123595 + AluY SINE Alu 2 309 -2 773 199 79 28 chr13 46621303 46621519 -73123379 - MLT2D LTR ERVL -187 227 1 13553 187 51 21 chr13 46623710 46624103 -73120795 + L1MA4 LINE L1 1 381 -6101 6042 12 0 0 chr13 46624103 46624782 -73120116 + L1PA2 LINE L1 5476 6154 -1 13553 187 51 21 chr13 46624782 46630408 -73114490 + L1MA4 LINE L1 381 6190 -292 364 171 80 0 chr13 46630425 46630513 -73114385 + L1MB4 LINE L1 6086 6180 0 415 206 7 20 chr13 46631095 46631241 -73113657 + (CCA)n Simple_repeat Simple_repeat 2 145 0 2294 164 26 17 chr13 46631473 46631895 -73113003 - MSTB LTR MaLR 0 426 1 533 13 120 0 chr13 46632423 46632498 -73112400 + L1PA3 LINE L1 6072 6155 0 9966 174 20 19 chr13 46632522 46635342 -73109556 - L1PA13 LINE L1 -13 6150 3321 403 236 81 0 chr13 46635960 46636083 -73108815 + MIR SINE MIR 103 235 -27 295 290 49 31 chr13 46636496 46636649 -73108249 + MIR SINE MIR 3 159 -49 763 269 25 4 chr13 46636676 46636921 -73107977 + MER20B DNA MER1_type 24 273 -510 614 183 138 29 chr13 46637093 46637333 -73107565 + MER20B DNA MER1_type 518 783 0 998 160 137 18 chr13 46638410 46638813 -73106085 - LTR1B LTR ERV1 0 826 332 2156 163 117 42 chr13 46638814 46639368 -73105530 + LTR1B LTR ERV1 5 600 -226 409 322 163 15 chr13 46639933 46640259 -73104639 + L1ME4a LINE L1 5502 5875 -246 663 180 80 10 chr13 46640261 46640461 -73104437 + Charlie5 DNA MER1_type 2345 2558 -54 504 117 0 0 chr13 46643155 46643232 -73101666 - MADE1 DNA Mariner -3 77 1 1367 335 146 21 chr13 46644123 46645453 -73099445 + L2 LINE L2 1764 3269 -3 242 306 36 45 chr13 46645870 46645981 -73098917 - MER5A DNA MER1_type 0 189 80 761 256 91 41 chr13 46645991 46646077 -73098821 + L1MD3 LINE L1 6842 6922 -1073 195 42 0 0 chr13 46646077 46646101 -73098797 + (CA)n Simple_repeat Simple_repeat 1 24 0 761 256 91 41 chr13 46646101 46647051 -73097847 + L1MD3 LINE L1 6922 7981 -14 186 259 56 0 chr13 46647051 46647105 -73097793 + MER5A DNA MER1_type 131 187 -2 822 305 78 16 chr13 46647611 46647985 -73096913 - MLT1I LTR MaLR -8 401 5 384 273 71 66 chr13 46647987 46648185 -73096713 - MIR SINE MIR -59 203 5 1146 236 78 17 chr13 46648678 46649022 -73095876 + MLT1A1 LTR MaLR 1 365 0 222 290 77 84 chr13 46649699 46649854 -73095044 + L2 LINE L2 2925 3078 -194 5667 29 0 0 chr13 46650745 46651405 -73093493 + L1PA4 LINE L1 5492 6151 -4 1553 145 45 11 chr13 46651829 46652246 -73092652 - MER61D LTR ERV1 -10 424 1 23741 147 17 10 chr13 46652296 46658176 -73086722 + L1PA8A LINE L1 3 5959 -487 2238 173 65 41 chr13 46658172 46658885 -73086013 + L1 LINE L1 3065 3794 -2352 * 384 215 0 13 chr13 46658883 46658962 -73085936 + L1PB4 LINE L1 6008 6085 -71 * 720 244 121 3 chr13 46659004 46659393 -73085505 - L1M4 LINE L1 -2640 3506 3072 261 273 65 0 chr13 46660297 46660374 -73084524 + MIR SINE MIR 61 142 -120 1968 116 3 46 chr13 46660756 46661059 -73083839 - AluSx SINE Alu 0 312 23 290 287 11 0 chr13 46661185 46661272 -73083626 + (TATG)n Simple_repeat Simple_repeat 4 91 0 351 271 52 10 chr13 46661275 46661371 -73083527 - L2 LINE L2 -29 3243 3144 389 288 23 0 chr13 46661634 46661766 -73083132 - LTR67 LTR ERVL -14 543 409 274 372 146 12 chr13 46662533 46662869 -73082029 + L2 LINE L2 2349 2729 -585 249 103 64 13 chr13 46663896 46663974 -73080924 + (TA)n Simple_repeat Simple_repeat 1 82 0 22 56 0 0 chr13 46664048 46664084 -73080814 + AT_rich Low_complexity Low_complexity 1 36 0 846 314 112 38 chr13 46664109 46664717 -73080181 + L2 LINE L2 2098 2750 -564 664 270 76 81 chr13 46664723 46664784 -73080114 + MLT1H1 LTR MaLR 7 67 -488 1156 202 113 58 chr13 46664784 46665130 -73079768 + MLT1A1 LTR MaLR 1 365 0 664 270 76 81 chr13 46665130 46665653 -73079245 + MLT1H1 LTR MaLR 67 543 -12 384 302 224 0 chr13 46665664 46665910 -73078988 + L2 LINE L2 2750 3044 -228 218 244 199 23 chr13 46665926 46666057 -73078841 - L2 LINE L2 -1564 1750 1597 353 310 53 31 chr13 46666151 46666377 -73078521 + LTR33 LTR ERVL 55 285 -236 21 36 0 0 chr13 46667166 46667194 -73077704 + AT_rich Low_complexity Low_complexity 1 28 0 544 299 30 0 chr13 46667238 46667402 -73077496 - MIR SINE MIR -15 247 79 2977 171 82 16 chr13 46667735 46668453 -73076445 + L1MB4 LINE L1 5444 6207 0 216 283 81 46 chr13 46668467 46668554 -73076344 + MIR SINE MIR 58 151 -57 26 50 0 0 chr13 46668751 46668791 -73076107 + AT_rich Low_complexity Low_complexity 1 40 0 242 289 39 53 chr13 46668796 46669004 -73075894 + L1MCc LINE L1 25 229 -6194 1456 178 94 0 chr13 46669118 46669404 -73075494 - MLT1A1 LTR MaLR -52 313 1 542 183 69 104 chr13 46669573 46669775 -73075123 - L1ME2 LINE L1 -2 6162 5968 416 280 66 28 chr13 46670928 46671110 -73073788 + MIR SINE MIR 18 206 -56 248 389 103 15 chr13 46671268 46671471 -73073427 - L2 LINE L2 -254 3059 2839 21 0 0 0 chr13 46672005 46672026 -73072872 + AT_rich Low_complexity Low_complexity 1 21 0 602 338 140 25 chr13 46672065 46672737 -73072161 + L2 LINE L2 2132 2880 -434 319 191 146 0 chr13 46673355 46673444 -73071454 + MER46C DNA MER2_type 12 113 -225 2628 128 32 44 chr13 46673731 46674231 -73070667 - L1MA9 LINE L1 0 6312 5819 1148 92 6 0 chr13 46674231 46674394 -73070504 - L1PA15 LINE L1 -151 6014 5851 638 81 0 0 chr13 46674395 46674481 -73070417 - L1PA15 LINE L1 -519 5647 5562 444 113 14 0 chr13 46674481 46674552 -73070346 - L1MA9 LINE L1 -801 5490 5419 1401 269 86 14 chr13 46675048 46675632 -73069266 + L1MC4a LINE L1 5254 5879 -1929 256 325 116 37 chr13 46676408 46676676 -73068222 + L2 LINE L2 2471 2759 -555 195 309 79 79 chr13 46676964 46677103 -73067795 + L2 LINE L2 3126 3264 -8 3049 136 40 11 chr13 46677105 46677633 -73067265 + L1PA16 LINE L1 5619 6161 -5 279 0 0 0 chr13 46678639 46678670 -73066228 + (CA)n Simple_repeat Simple_repeat 1 31 0 325 186 12 12 chr13 46678677 46678763 -73066135 + CT-rich Low_complexity Low_complexity 2 87 0 180 0 0 0 chr13 46678763 46678783 -73066115 + (CA)n Simple_repeat Simple_repeat 1 20 0 274 274 137 43 chr13 46679730 46679847 -73065051 + L2 LINE L2 3165 3292 -21 1310 208 23 8 chr13 46680077 46680342 -73064556 - MLT1E LTR MaLR -6 587 319 465 273 53 20 chr13 46680343 46680493 -73064405 - MLT1E LTR MaLR -438 155 1 4330 90 21 0 chr13 46680527 46681136 -73063762 - L1PA13 LINE L1 -4 6159 5538 2101 103 43 6 chr13 46682460 46682809 -73062089 + L1PB4 LINE L1 5308 5669 -487 1698 61 18 0 chr13 46682809 46683038 -73061860 + MLT2A1 LTR ERVL 1 233 -211 240 35 0 0 chr13 46683043 46683072 -73061826 + (CATA)n Simple_repeat Simple_repeat 3 31 0 245 125 0 0 chr13 46683093 46683133 -73061765 + MLT2A1 LTR ERVL 397 436 -8 2563 136 22 62 chr13 46683137 46683256 -73061642 + L1PB4 LINE L1 5665 5787 -369 2301 117 0 3 chr13 46683256 46683563 -73061335 + AluSx SINE Alu 1 306 -6 2563 136 22 62 chr13 46683563 46683942 -73060956 + L1PB4 LINE L1 5787 6143 -13 264 274 16 0 chr13 46685290 46685352 -73059546 - L3 LINE CR1 -2 1575 1513 428 275 116 60 chr13 46685488 46685721 -73059177 + MIR SINE MIR 1 246 -16 316 309 224 40 chr13 46686349 46687026 -73057872 + L2 LINE L2 1890 2691 -623 390 334 91 49 chr13 46687140 46687526 -73057372 + L2 LINE L2 2871 3272 0 231 259 0 17 chr13 46687932 46687990 -73056908 - L2 LINE L2 -1 3271 3215 17237 32 5 0 chr13 46688362 46691203 -73053695 + L1PA4 LINE L1 3307 6150 -5 213 350 94 0 chr13 46691229 46691346 -73053552 - L2 LINE L2 -159 3113 2986 190 200 0 0 chr13 46692196 46692226 -73052672 - MIR SINE MIR -23 239 210 * 394 260 203 53 chr13 46692201 46692428 -73052470 - L2 LINE L2 -34 3279 3019 434 274 103 44 chr13 46693678 46694169 -73050729 + L2 LINE L2 2676 3203 -110 2396 90 0 0 chr13 46694420 46694719 -73050179 + AluY SINE Alu 1 299 -12 263 299 39 16 chr13 46694942 46695069 -73049829 + L1ME LINE L1 5522 5651 -470 189 303 45 73 chr13 46695552 46695730 -73049168 + L2 LINE L2 2933 3105 -167 344 267 86 9 chr13 46695944 46696049 -73048849 + L2 LINE L2 3158 3270 -2 187 378 27 27 chr13 46696662 46696773 -73048125 - L2 LINE L2 -1 3312 3202 1344 293 58 12 chr13 46696943 46697020 -73047878 - LTR33 LTR ERVL 0 521 449 2404 103 28 14 chr13 46697020 46697379 -73047519 - THE1B LTR MaLR 0 364 1 1344 293 58 12 chr13 46697379 46697799 -73047099 - LTR33 LTR ERVL -72 449 1 243 336 35 35 chr13 46699137 46699253 -73045645 - L2 LINE L2 -1 3312 3197 434 358 97 35 chr13 46699518 46700199 -73044699 - L2 LINE L2 0 3272 2538 499 330 82 25 chr13 46700208 46700523 -73044375 - L2 LINE L2 -1344 1970 1638 351 293 286 0 chr13 46700846 46700986 -73043912 - MER5A DNA MER1_type -6 183 4 361 281 58 7 chr13 46701035 46701174 -73043724 + L1MC/D LINE L1 4561 4706 -1440 322 301 34 34 chr13 46701307 46701569 -73043329 + L1MC/D LINE L1 4906 5167 -979 340 243 57 29 chr13 46701602 46701742 -73043156 + L1MC/D LINE L1 5564 5707 -2101 919 159 29 12 chr13 46701753 46701923 -73042975 - THE1C LTR MaLR -202 173 1 302 186 35 12 chr13 46702251 46702337 -73042561 + L1 LINE L1 5063 5150 -996 2560 229 94 33 chr13 46702385 46703205 -73041693 - HsTC2 DNA Tc2 -946 952 73 4605 57 34 7 chr13 46703205 46703818 -73041080 - L1PA8 LINE L1 -7 6165 5536 2560 229 94 33 chr13 46703818 46703880 -73041018 - HsTC2 DNA Tc2 -1825 73 16 661 251 105 38 chr13 46704077 46704316 -73040582 - MIR SINE MIR 0 262 8 3272 107 15 0 chr13 46704321 46704789 -73040109 - L1PA15 LINE L1 -4 6161 5687 3321 147 0 9 chr13 46704789 46705699 -73039199 + L1P4 LINE L1 4716 5615 -550 2058 72 52 0 chr13 46705695 46706047 -73038851 - L1PA7 LINE L1 -710 5444 5079 * 5496 65 1 1 chr13 46706047 46706740 -73038158 + L1PA7 LINE L1 5445 6138 -16 545 105 0 12 chr13 46706753 46706839 -73038059 + L1P4 LINE L1 5603 5687 -478 241 298 48 12 chr13 46707046 46707130 -73037768 - MIR SINE MIR -56 206 120 605 231 88 75 chr13 46707183 46707562 -73037336 - MLT1J LTR MaLR -50 461 29 271 259 39 30 chr13 46707565 46707685 -73037213 - MIR SINE MIR -78 130 4 229 219 0 0 chr13 46709122 46709163 -73035735 - MER5A DNA MER1_type -105 84 44 324 341 77 75 chr13 46709875 46710327 -73034571 - L2 LINE L2 -3 3269 2817 22 0 0 0 chr13 46710802 46710824 -73034074 + AT_rich Low_complexity Low_complexity 1 22 0 244 204 20 0 chr13 46710876 46710925 -73033973 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 348 43 0 0 chr13 46711642 46711688 -73033210 + (TG)n Simple_repeat Simple_repeat 1 46 0 1024 222 21 12 chr13 46711856 46712099 -73032799 - MLT1D LTR MaLR 0 505 261 1723 171 28 108 chr13 46712122 46712306 -73032592 + MSTB LTR MaLR 1 198 -228 4343 44 2 0 chr13 46712306 46712830 -73032068 + L1PA7 LINE L1 5617 6141 -13 1723 171 28 108 chr13 46712830 46713060 -73031838 + MSTB LTR MaLR 198 445 19 186 43 0 0 chr13 46713060 46713083 -73031815 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1277 39 0 0 chr13 46713090 46713243 -73031655 - L1PA3 LINE L1 -2 6153 6001 1723 171 28 108 chr13 46713243 46713282 -73031616 + MSTB LTR MaLR 385 426 0 627 164 138 13 chr13 46713299 46713451 -73031447 - MLT1D LTR MaLR -309 196 26 302 261 82 137 chr13 46713463 46713938 -73030960 + L2 LINE L2 1318 1766 -1548 3659 173 25 82 chr13 46713958 46714430 -73030468 - L1MD2 LINE L1 0 6359 5862 306 73 0 0 chr13 46714430 46714471 -73030427 + (TG)n Simple_repeat Simple_repeat 2 42 0 3659 173 25 82 chr13 46714471 46714974 -73029924 - L1MD2 LINE L1 -497 5862 5444 2520 72 0 0 chr13 46714974 46715278 -73029620 - AluY SINE Alu -7 304 1 3659 173 25 82 chr13 46715278 46715334 -73029564 - L1MD2 LINE L1 -915 5444 5386 4345 138 21 0 chr13 46715332 46715985 -73028913 - L1PA16 LINE L1 0 6166 5500 596 324 128 42 chr13 46715989 46716396 -73028502 + L2 LINE L2 1826 2292 -1022 2119 116 3 0 chr13 46716396 46716680 -73028218 - AluSq SINE Alu -22 291 7 596 324 128 42 chr13 46716680 46716813 -73028085 + L2 LINE L2 2292 2412 -902 622 308 73 26 chr13 46716913 46717215 -73027683 - MLT1J2 LTR MaLR -132 318 3 270 221 63 63 chr13 46719776 46719903 -73024995 + MLT1J LTR MaLR 23 149 -362 254 281 133 8 chr13 46720078 46720206 -73024692 + MLT1L LTR MaLR 407 550 -65 559 198 35 93 chr13 46720357 46720529 -73024369 - MLT2C1 LTR ERVL 0 397 236 8283 234 39 13 chr13 46720534 46722524 -73022374 + ERVL LTR ERVL 1553 3650 -2114 450 0 0 0 chr13 46722524 46722574 -73022324 + (CA)n Simple_repeat Simple_repeat 1 50 0 8283 234 39 13 chr13 46722574 46723160 -73021738 + ERVL LTR ERVL 3650 4220 -1544 885 224 64 43 chr13 46723160 46723441 -73021457 + MLT1F LTR MaLR 278 542 0 305 125 18 0 chr13 46723769 46723825 -73021073 + GA-rich Low_complexity Low_complexity 2 58 0 1340 267 70 25 chr13 46725099 46725582 -73019316 - MLT1D LTR MaLR 0 505 1 401 313 67 7 chr13 46726125 46726275 -73018623 - MIR SINE MIR -78 184 26 2116 127 3 0 chr13 46727144 46727443 -73017455 + AluSx SINE Alu 1 300 -12 1485 154 37 197 chr13 46729538 46730063 -73014835 + MER61D LTR ERV1 1 501 0 2350 119 41 36 chr13 46730701 46731063 -73013835 + THE1B LTR MaLR 1 364 0 416 272 73 47 chr13 46732184 46732375 -73012523 - L2 LINE L2 0 3313 3118 45269 39 0 3 chr13 46732385 46738555 -73006343 + L1PA3 LINE L1 1 6155 0 283 269 86 21 chr13 46738536 46738770 -73006128 + L1MC5 LINE L1 7284 7532 -429 * 210 71 0 0 chr13 46738773 46738801 -73006097 + (A)n Simple_repeat Simple_repeat 1 28 0 401 234 229 27 chr13 46739158 46739346 -73005552 - MER46C DNA MER2_type -112 226 1 421 186 289 57 chr13 46739447 46739544 -73005354 - MIR SINE MIR -15 247 174 635 78 0 0 chr13 46739544 46739621 -73005277 - MADE1 DNA Mariner -3 77 1 421 186 289 57 chr13 46739621 46739717 -73005181 - MIR SINE MIR -88 174 9 291 114 0 0 chr13 46740352 46740396 -73004502 + (TG)n Simple_repeat Simple_repeat 2 45 0 261 137 0 20 chr13 46740829 46740880 -73004018 + MIR SINE MIR 95 144 -118 663 189 169 0 chr13 46740915 46741063 -73003835 - MER5A DNA MER1_type -7 182 10 341 247 0 24 chr13 46741079 46741164 -73003734 + MIR SINE MIR 169 251 -11 2159 183 74 69 chr13 46741855 46742369 -73002529 + MLT2B3 LTR ERVL 1 520 -34 438 20 0 0 chr13 46742369 46742420 -73002478 + (CA)n Simple_repeat Simple_repeat 1 51 0 2159 183 74 69 chr13 46742420 46742456 -73002442 + MLT2B3 LTR ERVL 520 554 0 674 230 112 25 chr13 46743059 46743255 -73001643 + MIR SINE MIR 36 248 -14 191 206 48 48 chr13 46743266 46743329 -73001569 + MIR SINE MIR 83 145 -63 187 278 111 48 chr13 46744031 46744157 -73000741 + MIR SINE MIR 26 159 -103 997 230 278 21 chr13 46744161 46744592 -73000306 - MLT1F LTR MaLR 0 542 1 392 272 10 10 chr13 46744592 46744695 -73000203 + MIR SINE MIR 159 261 -1 3168 216 15 10 chr13 46746670 46747254 -72997644 - MER82 DNA MER2_type 0 653 67 2080 76 0 0 chr13 46747254 46747504 -72997394 + L1PA8 LINE L1 5917 6166 -6 1888 130 22 4 chr13 46747507 46747784 -72997114 + AluSx SINE Alu 1 282 -30 231 61 0 0 chr13 46747787 46747820 -72997078 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 304 250 105 0 chr13 46747840 46747916 -72996982 - MER82 DNA MER2_type -569 84 1 994 91 0 23 chr13 46747963 46748095 -72996803 + AluSq/x SINE Alu 1 129 -183 2327 110 0 3 chr13 46748166 46748475 -72996423 - AluSx SINE Alu -4 308 1 806 206 114 26 chr13 46749329 46749557 -72995341 + MIR SINE MIR 13 260 -2 27447 27 2 0 chr13 46749662 46753532 -72991366 - L1PA3 LINE L1 0 6155 2284 864 247 0 6 chr13 46753722 46753900 -72990998 - MER58A DNA MER1_type -6 218 42 3368 164 16 23 chr13 46753901 46754546 -72990352 + L1MB3 LINE L1 5283 5922 -258 1245 148 59 13 chr13 46754613 46754850 -72990048 + L1MB3 LINE L1 5935 6182 -1 30 0 0 0 chr13 46754851 46754881 -72990017 + AT_rich Low_complexity Low_complexity 1 30 0 350 186 43 0 chr13 46754956 46755026 -72989872 - MLT1I LTR MaLR -6 403 331 39100 77 14 9 chr13 46755039 46761137 -72983761 + L1PA6 LINE L1 11 6148 -6 6200 57 0 0 chr13 46761142 46761863 -72983035 + L1PA5 LINE L1 5428 6148 -6 6175 59 1 3 chr13 46761868 46762596 -72982302 + L1PA6 LINE L1 5428 6154 0 377 306 68 61 chr13 46762601 46762912 -72981986 - MLT1I LTR MaLR -72 337 25 2680 118 60 0 chr13 46763002 46763400 -72981498 + L1MA2 LINE L1 5883 6304 0 2171 122 7 0 chr13 46764146 46764442 -72980456 + AluSx SINE Alu 1 298 -14 2469 49 0 13 chr13 46765066 46765370 -72979528 + AluY SINE Alu 1 300 -11 204 40 0 0 chr13 46767068 46767093 -72977805 + (ATG)n Simple_repeat Simple_repeat 2 26 0 1514 217 92 74 chr13 46767362 46767919 -72976979 - MLT1F1 LTR MaLR 0 567 1 841 215 191 57 chr13 46768137 46768756 -72976142 + LTR50 LTR ERVL 1 794 -1 294 87 0 0 chr13 46769544 46769590 -72975308 + (TC)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr13 46769914 46769937 -72974961 + AT_rich Low_complexity Low_complexity 1 23 0 2252 106 0 3 chr13 46770505 46770806 -72974092 + AluSc SINE Alu 1 300 -9 666 168 0 0 chr13 46770997 46771116 -72973782 + MLT2D LTR ERVL 1 119 -295 210 252 25 8 chr13 46771434 46771511 -72973387 + CT-rich Low_complexity Low_complexity 1 78 0 318 324 70 22 chr13 46771547 46771732 -72973166 + L2 LINE L2 2434 2627 -687 1390 217 57 3 chr13 46771732 46772068 -72972830 + MLT2D LTR ERVL 1 354 -60 189 0 0 0 chr13 46772068 46772089 -72972809 + (TC)n Simple_repeat Simple_repeat 2 22 0 774 281 144 22 chr13 46772115 46772529 -72972369 + L2 LINE L2 2607 3061 -211 749 172 23 0 chr13 46772555 46772683 -72972215 - MIR SINE MIR -32 230 100 197 180 20 0 chr13 46772792 46772842 -72972056 + (CATA)n Simple_repeat Simple_repeat 2 52 0 13201 89 12 2 chr13 46772954 46775587 -72969311 + L1PA7 LINE L1 3493 6149 -5 1083 146 47 13 chr13 46777016 46777249 -72967649 + L1MA8 LINE L1 6048 6288 -3 235 294 0 15 chr13 46777362 46777430 -72967468 - MIR SINE MIR -2 260 194 364 310 98 12 chr13 46778350 46778595 -72966303 + MLT1I LTR MaLR 1 266 -143 8960 57 10 3 chr13 46778762 46780718 -72964180 + L1PA7 LINE L1 4177 6149 -5 1083 146 47 13 chr13 46782147 46782380 -72962518 + L1MA8 LINE L1 6048 6288 -3 235 294 0 15 chr13 46782493 46782561 -72962337 - MIR SINE MIR -2 260 194 364 310 98 12 chr13 46783481 46783726 -72961172 + MLT1I LTR MaLR 1 266 -143 687 269 32 15 chr13 46783830 46784168 -72960730 - Charlie2a DNA MER1_type 0 2862 2519 1668 229 123 13 chr13 46784206 46784637 -72960261 - Charlie2a DNA MER1_type -699 2163 1642 2342 101 0 3 chr13 46784637 46784935 -72959963 - AluSq SINE Alu -16 297 1 1668 229 123 13 chr13 46784935 46785120 -72959778 - Charlie2a DNA MER1_type -1220 1642 1479 234 215 0 31 chr13 46785180 46785245 -72959653 - Charlie2b DNA MER1_type -2105 677 615 986 262 170 31 chr13 46785366 46785877 -72959021 - Charlie2b DNA MER1_type -2254 608 27 2387 185 97 62 chr13 46785973 46786605 -72958293 - MLT1E1 LTR MaLR 0 654 1 378 306 45 25 chr13 46786726 46786883 -72958015 - MER5A DNA MER1_type -28 161 2 195 290 32 32 chr13 46787635 46787697 -72957201 - L2 LINE L2 -1 3312 3251 903 154 14 29 chr13 46788364 46788572 -72956326 - L1MA7 LINE L1 -1 6290 6086 627 58 23 0 chr13 46788572 46788659 -72956239 + LOR1-int LTR ERV1 3314 3402 -4718 189 196 0 0 chr13 46789822 46789873 -72955025 + GA-rich Low_complexity Low_complexity 1 51 0 1111 204 61 0 chr13 46789910 46790174 -72954724 + L1MC3 LINE L1 7341 7620 -165 846 203 0 6 chr13 46790174 46790332 -72954566 + Tigger1 DNA MER2_type 1 157 -2261 * 1179 152 24 0 chr13 46790321 46790532 -72954366 + Tigger1 DNA MER2_type 2202 2417 -1 472 169 0 0 chr13 46790533 46790616 -72954282 + L1MC3 LINE L1 7624 7706 -79 393 141 13 13 chr13 46791071 46791149 -72953749 + L1MC3 LINE L1 7700 7777 -8 347 299 36 52 chr13 46791244 46791632 -72953266 + L1ME LINE L1 695 1076 -4994 266 125 0 0 chr13 46791628 46791668 -72953230 - L1P LINE L1 -2286 3860 3821 * 717 140 20 20 chr13 46791726 46791876 -72953022 + L1M1 LINE L1 19 168 -7397 22625 160 20 20 chr13 46792830 46798555 -72946343 - L1PA11 LINE L1 0 6489 756 2136 111 9 19 chr13 46799016 46799209 -72945689 - AluSp SINE Alu 0 313 123 186 43 0 0 chr13 46799209 46799232 -72945666 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2136 111 9 19 chr13 46799232 46799354 -72945544 - AluSp SINE Alu -190 123 1 186 43 0 0 chr13 46800918 46800941 -72943957 + (CAA)n Simple_repeat Simple_repeat 2 24 0 410 90 15 0 chr13 46802032 46802099 -72942799 + MER53 DNA DNA 101 168 -21 2555 145 24 9 chr13 46802727 46803147 -72941751 + MSTB LTR MaLR 1 426 0 1056 215 107 15 chr13 46803169 46803439 -72941459 - MLT1E LTR MaLR -42 551 257 4754 53 13 0 chr13 46803751 46804349 -72940549 - L1PA7 LINE L1 -2 6152 5547 2017 95 0 0 chr13 46804351 46804656 -72940242 + L1P LINE L1 3679 3983 -2163 2234 144 9 0 chr13 46804863 46805197 -72939701 - MER1B DNA MER1_type 0 337 1 312 158 0 0 chr13 46805712 46805769 -72939129 + (CCA)n Simple_repeat Simple_repeat 3 59 0 1723 212 113 53 chr13 46805794 46806318 -72938580 - MLT1F1 LTR MaLR 0 567 13 778 203 6 6 chr13 46806762 46806939 -72937959 + L1MB8 LINE L1 5581 5757 -421 1415 131 8 4 chr13 46806942 46807194 -72937704 + L1MA9 LINE L1 4075 4327 -1819 40551 35 22 1 chr13 46807195 46813219 -72931679 + L1PA2 LINE L1 2 6150 -5 5329 151 32 19 chr13 46813214 46815182 -72929716 + L1MA9 LINE L1 4316 6312 0 * 2381 105 17 8 chr13 46815254 46815606 -72929292 + THE1A LTR MaLR 1 355 0 11677 100 2 1 chr13 46815606 46817183 -72927715 + THE1A-int LTR MaLR 1 1580 0 2599 124 3 6 chr13 46817183 46817539 -72927359 + THE1A LTR MaLR 1 355 0 2160 128 42 39 chr13 46817539 46817915 -72926983 + L1MB8 LINE L1 5782 6161 -17 310 206 40 8 chr13 46818942 46819068 -72925830 + (TA)n Simple_repeat Simple_repeat 1 130 0 366 162 0 0 chr13 46819068 46819142 -72925756 + (TG)n Simple_repeat Simple_repeat 1 74 0 350 246 85 15 chr13 46820068 46820198 -72924700 + L1ME4a LINE L1 5961 6099 -22 1264 205 88 22 chr13 46821368 46821685 -72923213 - MER46C DNA MER2_type 0 338 1 1557 188 3 13 chr13 46822885 46823194 -72921704 + AluJo SINE Alu 1 306 -6 245 207 52 0 chr13 46824146 46824204 -72920694 + MIR3 SINE MIR 127 187 -21 842 203 9 65 chr13 46824414 46824631 -72920267 + MLT1C LTR MaLR 1 205 -262 1285 234 83 41 chr13 46824640 46825003 -72919895 + MER21B LTR ERV1 284 661 -202 405 339 67 0 chr13 46825704 46825869 -72919029 - L3 LINE CR1 -2 1575 1400 1926 168 7 0 chr13 46826444 46826753 -72918145 - AluJb SINE Alu -1 311 1 2000 228 135 26 chr13 46826761 46827296 -72917602 - MLT1E LTR MaLR 0 593 1 214 279 16 0 chr13 46827298 46827359 -72917539 + MER5B DNA MER1_type 111 172 -6 781 191 54 6 chr13 46827415 46827583 -72917315 + MER5B DNA MER1_type 3 178 0 228 330 50 82 chr13 46827747 46828029 -72916869 - L2 LINE L2 -707 2607 2335 7372 57 9 2 chr13 46829489 46830679 -72914219 + L1PA7 LINE L1 4948 6143 -11 33 43 0 0 chr13 46830685 46830732 -72914166 + AT_rich Low_complexity Low_complexity 1 47 0 5620 156 28 9 chr13 46831387 46832333 -72912565 + L1MC1 LINE L1 5371 6333 0 474 333 143 16 chr13 46832430 46832793 -72912105 - LTR67 LTR ERVL -2 555 147 285 317 182 14 chr13 46832950 46833313 -72911585 - L2 LINE L2 -997 2317 1894 218 325 79 16 chr13 46833362 46833488 -72911410 + L2 LINE L2 3170 3303 -10 182 304 0 0 chr13 46833796 46833852 -72911046 - MIR SINE MIR -70 192 137 389 323 118 0 chr13 46835040 46835269 -72909629 + MIR SINE MIR 6 261 -1 1728 187 31 24 chr13 46836372 46836831 -72908067 - MLT2B1 LTR ERVL -5 510 1 279 306 107 0 chr13 46837887 46838008 -72906890 + L2 LINE L2 3180 3313 0 2308 237 24 4 chr13 46838122 46838675 -72906223 + MER90 LTR ERV1 1 564 -11 571 229 176 16 chr13 46838799 46838987 -72905911 - MIR SINE MIR 0 262 45 24 32 0 0 chr13 46840604 46840635 -72904263 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 46840908 46840929 -72903969 + AT_rich Low_complexity Low_complexity 1 21 0 374 235 21 18 chr13 46842894 46843009 -72901889 - MLT1L LTR MaLR 0 615 478 295 302 141 13 chr13 46843486 46843635 -72901263 + MIR SINE MIR 87 254 -8 1460 155 136 124 chr13 46844625 46845044 -72899854 + MSTA LTR MaLR 1 424 -4 522 221 53 15 chr13 46845110 46845241 -72899657 + MIR SINE MIR 1 136 -126 2222 120 0 0 chr13 46845902 46846202 -72898696 - AluY SINE Alu -11 300 1 833 216 129 87 chr13 46846319 46846389 -72898509 - LTR41 LTR ERVL -6 767 701 2373 94 0 3 chr13 46846389 46846698 -72898200 + AluSg SINE Alu 1 308 -2 833 216 129 87 chr13 46846698 46847007 -72897891 - LTR41 LTR ERVL -72 701 372 663 187 39 39 chr13 46847327 46847482 -72897416 - MER3 DNA MER1_type -3 206 52 1273 284 98 5 chr13 46848061 46848449 -72896449 + LTR16C LTR ERVL 68 491 0 2952 93 3 3 chr13 46848859 46849223 -72895675 + THE1B LTR MaLR 1 364 0 1919 98 39 0 chr13 46849595 46849851 -72895047 + L1PA16 LINE L1 5901 6166 0 380 250 196 20 chr13 46849911 46850059 -72894839 + MIR SINE MIR 26 199 -63 300 216 372 74 chr13 46850496 46850557 -72894341 + L2 LINE L2 1706 1748 -1566 2675 121 8 3 chr13 46850557 46850928 -72893970 - THE1C LTR MaLR -2 373 1 300 216 372 74 chr13 46850928 46851301 -72893597 + L2 LINE L2 1748 2270 -1044 326 301 11 11 chr13 46851679 46851772 -72893126 + LTR16C LTR ERVL 265 357 -134 2342 100 0 0 chr13 46852189 46852488 -72892410 + AluSg SINE Alu 1 299 -11 816 208 35 98 chr13 46853154 46853409 -72891489 - MIR SINE MIR -1 261 23 249 83 0 0 chr13 46855437 46855473 -72889425 + (GA)n Simple_repeat Simple_repeat 1 36 0 1643 190 31 0 chr13 46856048 46856337 -72888561 + AluJo SINE Alu 1 298 -14 1532 145 4 0 chr13 46856711 46856939 -72887959 - Tigger3(Golem) DNA MER2_type -1 3028 2800 650 157 0 0 chr13 46857487 46857589 -72887309 + MER45A DNA AcHobo 77 178 0 344 314 121 0 chr13 46858904 46859044 -72885854 - MIR SINE MIR -36 226 70 2269 123 0 3 chr13 46859618 46859926 -72884972 - AluSx SINE Alu -5 307 1 2180 112 0 0 chr13 46860067 46860361 -72884537 + AluSx SINE Alu 1 294 -18 460 289 89 0 chr13 46860405 46860540 -72884358 + MER5B DNA MER1_type 1 147 -31 630 155 113 35 chr13 46860576 46860718 -72884180 - MER5B DNA MER1_type -25 153 1 228 278 130 10 chr13 46860943 46861094 -72883804 + MIR SINE MIR 23 259 -3 1705 97 135 31 chr13 46861125 46861635 -72883263 + MER51A LTR ERV1 1 657 0 431 189 28 47 chr13 46861654 46861760 -72883138 - MIR SINE MIR 0 262 159 285 252 231 28 chr13 46863020 46863163 -72881735 + MIR SINE MIR 78 249 -13 203 211 70 56 chr13 46863402 46863473 -72881425 - MIR SINE MIR -179 83 12 23 0 0 0 chr13 46863716 46863739 -72881159 + AT_rich Low_complexity Low_complexity 1 23 0 2373 97 0 0 chr13 46864362 46864662 -72880236 - AluSg SINE Alu -10 300 1 245 208 21 0 chr13 46864873 46864921 -72879977 + L1MC4a LINE L1 5549 5597 -2211 622 246 86 48 chr13 46864924 46865198 -72879700 + L1MC4a LINE L1 5642 5928 -252 692 193 104 35 chr13 46865294 46865496 -72879402 - MIR SINE MIR -27 235 20 690 255 77 0 chr13 46867056 46867252 -72877646 - LTR16C LTR ERVL -1 490 280 1816 137 16 36 chr13 46867949 46868255 -72876643 - Tigger1 DNA MER2_type 0 2418 2119 * 3543 138 41 2 chr13 46868230 46868794 -72876104 - Tigger1 DNA MER2_type -1662 756 171 266 26 53 0 chr13 46869340 46869378 -72875520 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 2244 90 3 40 chr13 46869384 46869705 -72875193 - AluY SINE Alu -1 310 2 1724 204 19 25 chr13 46869734 46870101 -72874797 + MLT1A1 LTR MaLR 1 365 0 1875 150 0 52 chr13 46870390 46870716 -72874182 + AluSx SINE Alu 4 312 0 1347 13 0 0 chr13 46871140 46871289 -72873609 + AluYa5 SINE Alu 148 296 -15 1218 207 56 77 chr13 46871360 46872003 -72872895 + MER76 LTR ERV 3 688 0 287 242 0 0 chr13 46872063 46872129 -72872769 - MIR SINE MIR -1 261 196 513 204 19 0 chr13 46872136 46872244 -72872654 + MER5C DNA MER1_type 3 112 -212 291 236 90 0 chr13 46872268 46872357 -72872541 + MER5C DNA MER1_type 227 323 -1 * 485 306 50 0 chr13 46872357 46872516 -72872382 - MIR SINE MIR -63 199 33 1200 156 10 0 chr13 46873018 46873210 -72871688 + Tigger1 DNA MER2_type 3 196 -2222 5894 168 12 28 chr13 46873210 46873943 -72870955 - L1PB1 LINE L1 -23 6128 5385 2582 39 0 19 chr13 46873943 46874251 -72870647 - L1PA5 LINE L1 -7 6147 5846 5894 168 12 28 chr13 46874251 46874771 -72870127 - L1PB1 LINE L1 -766 5385 4859 2111 116 3 0 chr13 46874771 46875056 -72869842 - AluSq SINE Alu -27 286 1 5894 168 12 28 chr13 46875056 46875936 -72868962 - L1PB1 LINE L1 -1292 4859 4027 389 132 0 0 chr13 46876209 46876262 -72868636 + MER63 DNA MER1_type 685 737 -99 24 0 0 0 chr13 46876500 46876524 -72868374 + AT_rich Low_complexity Low_complexity 1 24 0 266 322 141 8 chr13 46877591 46877712 -72867186 + L2 LINE L2 3136 3272 0 1773 203 39 107 chr13 46878836 46879279 -72865619 + MLT1D LTR MaLR 2 403 -102 1963 141 0 4 chr13 46879279 46879556 -72865342 + AluSx SINE Alu 14 289 -23 1773 203 39 107 chr13 46879556 46879653 -72865245 + MLT1D LTR MaLR 403 505 0 192 77 0 0 chr13 46880522 46880548 -72864350 + (CA)n Simple_repeat Simple_repeat 1 26 0 1461 199 57 3 chr13 46880838 46881120 -72863778 - AluJo SINE Alu -10 302 6 1683 182 10 7 chr13 46881134 46881431 -72863467 - AluJb SINE Alu -14 298 1 460 271 15 70 chr13 46882391 46882590 -72862308 - MER5A DNA MER1_type -1 188 1 295 198 35 48 chr13 46883562 46883697 -72861201 + LTR16A1 LTR ERVL 360 457 0 562 209 72 43 chr13 46884122 46884261 -72860637 - MLT1F1 LTR MaLR -396 171 29 1657 273 71 23 chr13 46885214 46885883 -72859015 + L1MC4a LINE L1 5221 5399 -747 34 65 0 0 chr13 46885981 46886043 -72858855 + AT_rich Low_complexity Low_complexity 1 62 0 10447 163 30 44 chr13 46886110 46888076 -72856822 + L1PB4 LINE L1 2975 4968 -1188 1644 66 0 0 chr13 46888076 46888273 -72856625 - L1PA7 LINE L1 -2 6152 5956 10447 163 30 44 chr13 46888273 46888763 -72856135 + L1PB4 LINE L1 4968 5464 -692 2407 58 7 16 chr13 46888763 46889073 -72855825 + AluY SINE Alu 1 307 -4 10447 163 30 44 chr13 46889073 46889290 -72855608 + L1PB4 LINE L1 5464 5683 -473 2375 89 0 3 chr13 46889290 46889592 -72855306 + AluSx SINE Alu 10 310 -2 10447 163 30 44 chr13 46889592 46889818 -72855080 + L1PB4 LINE L1 5683 5911 -245 2475 69 7 0 chr13 46889818 46890122 -72854776 + AluSq SINE Alu 1 306 -7 10447 163 30 44 chr13 46890122 46890477 -72854421 + L1PB4 LINE L1 5911 6156 0 219 167 0 0 chr13 46890856 46890898 -72854000 + CT-rich Low_complexity Low_complexity 1 42 0 2430 74 0 13 chr13 46891943 46892255 -72852643 - AluY SINE Alu -3 308 1 1883 172 0 10 chr13 46893025 46893339 -72851559 - AluJb SINE Alu 0 312 2 180 0 0 0 chr13 46893654 46893674 -72851224 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr13 46894553 46894582 -72850316 + AT_rich Low_complexity Low_complexity 1 29 0 399 21 0 0 chr13 46895089 46895137 -72849761 + (TG)n Simple_repeat Simple_repeat 2 49 0 1024 199 0 17 chr13 46895144 46895325 -72849573 + MER5B DNA MER1_type 1 178 0 800 189 0 7 chr13 46895483 46895631 -72849267 + MLT2A2 LTR ERVL 307 453 0 425 157 0 0 chr13 46895631 46895701 -72849197 + MLT1D LTR MaLR 390 459 -46 272 330 102 0 chr13 46895873 46895961 -72848937 - MER5A DNA MER1_type -80 109 13 201 178 44 0 chr13 46896052 46896097 -72848801 + L2 LINE L2 3160 3206 -107 1750 135 58 0 chr13 46896693 46896953 -72847945 - AluSx SINE Alu -37 275 1 638 299 44 57 chr13 46897188 46897506 -72847392 + L1MEc LINE L1 35 348 -6048 2161 132 47 47 chr13 46897525 46897889 -72847009 - THE1B LTR MaLR 0 364 1 12517 91 10 8 chr13 46897889 46899465 -72845433 - THE1B-int LTR MaLR 0 1580 1 2002 149 57 34 chr13 46899465 46899814 -72845084 - THE1B LTR MaLR 0 364 8 1526 288 59 43 chr13 46899818 46900489 -72844409 + L1MEc LINE L1 390 1084 -5312 2214 147 134 11 chr13 46900489 46900869 -72844029 - MSTA LTR MaLR 0 428 2 1526 288 59 43 chr13 46900869 46901215 -72843683 + L1MEc LINE L1 1084 1423 -4973 2361 180 83 7 chr13 46901736 46902169 -72842729 - MER82 DNA MER2_type 0 653 188 327 269 123 36 chr13 46902380 46902599 -72842299 - LTR40c LTR ERVL -59 406 169 1890 151 3 25 chr13 46903565 46903884 -72841014 + AluSx SINE Alu 1 312 0 1065 149 55 11 chr13 46904111 46904292 -72840606 - MER5A DNA MER1_type 0 189 1 483 158 14 7 chr13 46905392 46905481 -72839417 + MER72 LTR ERV1 586 881 -42 1161 233 51 34 chr13 46905571 46905927 -72838971 - LTR16B LTR ERVL -100 364 3 793 184 8 0 chr13 46906405 46906530 -72838368 + FLAM_C SINE Alu 2 127 -6 2464 175 76 12 chr13 46906651 46907136 -72837762 - MER34 LTR ERV1 0 542 27 1378 210 79 19 chr13 46907829 46908196 -72836702 - L1MC4 LINE L1 -1 8041 7653 2470 51 0 0 chr13 46910358 46910653 -72834245 - AluY SINE Alu -16 295 1 219 36 0 0 chr13 46911222 46911250 -72833648 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 432 0 0 0 chr13 46912053 46912101 -72832797 + (TG)n Simple_repeat Simple_repeat 2 49 0 1884 107 19 15 chr13 46912118 46912389 -72832509 - THE1B LTR MaLR -92 272 1 688 300 46 29 chr13 46913236 46913586 -72831312 + L2 LINE L2 2358 2713 -601 2530 135 22 24 chr13 46914177 46914559 -72830339 + L1MC1 LINE L1 5442 5824 -509 2389 98 0 0 chr13 46914559 46914865 -72830033 + AluSg SINE Alu 1 306 -4 2530 135 22 24 chr13 46914865 46914896 -72830002 + L1MC1 LINE L1 5824 5854 -479 1993 139 10 0 chr13 46914897 46915185 -72829713 + AluSx SINE Alu 2 292 -20 1349 119 44 9 chr13 46916269 46916495 -72828403 + L1MA5A LINE L1 6064 6297 0 2336 111 0 0 chr13 46916543 46916841 -72828057 + AluSx SINE Alu 1 298 -14 307 299 95 54 chr13 46916989 46917084 -72827814 - L2 LINE L2 -3 3269 3164 3229 174 30 2 chr13 46917084 46917625 -72827273 + MER74A LTR ERVL 1 556 -2 307 299 95 54 chr13 46917625 46917676 -72827222 - L2 LINE L2 -108 3164 3117 2227 100 3 3 chr13 46918112 46918403 -72826495 + AluSx SINE Alu 1 291 -21 233 284 49 12 chr13 46918410 46918491 -72826407 + MIR3 SINE MIR 105 188 -20 1593 188 74 56 chr13 46918525 46918903 -72825995 + MLT1B LTR MaLR 1 385 -5 363 245 117 42 chr13 46920295 46920446 -72824452 + MIR3 SINE MIR 22 187 -21 50 31 0 0 chr13 46920495 46920559 -72824339 + AT_rich Low_complexity Low_complexity 1 64 0 1712 125 80 21 chr13 46920685 46920974 -72823924 + AluSx SINE Alu 1 306 -6 1730 213 136 5 chr13 46920993 46921406 -72823492 + MLT1C LTR MaLR 1 467 0 378 224 128 32 chr13 46921714 46921839 -72823059 + LTR67 LTR ERVL 414 550 -7 348 296 91 8 chr13 46921988 46922120 -72822778 - MIR SINE MIR -80 182 40 1528 212 115 15 chr13 46923222 46923632 -72821266 + L1ME3 LINE L1 5564 6016 -146 229 156 0 44 chr13 46923632 46923677 -72821221 + MER3 DNA MER1_type 12 54 -155 515 92 0 0 chr13 46923729 46923805 -72821093 + L1PA11 LINE L1 6099 6174 0 2361 73 0 3 chr13 46923833 46924134 -72820764 - AluY SINE Alu -11 300 1 506 313 121 0 chr13 46924317 46924499 -72820399 - MIR SINE MIR 0 262 59 10212 76 10 1 chr13 46924616 46926683 -72818215 + L1PA7 LINE L1 4079 6154 0 272 207 86 159 chr13 46927093 46927489 -72817409 - MLT1K LTR MaLR -5 583 217 660 319 22 0 chr13 46927687 46927869 -72817029 + MIR SINE MIR 61 246 -16 2598 68 0 0 chr13 46928850 46929160 -72815738 - AluY SINE Alu -1 310 1 220 263 30 61 chr13 46929296 46929395 -72815503 - L3 LINE CR1 -81 1496 1401 1526 136 6 196 chr13 46929553 46930037 -72814861 + MER57A LTR ERV1 12 403 0 198 347 116 0 chr13 46930038 46930133 -72814765 - L3 LINE CR1 -394 1183 1078 291 175 0 0 chr13 46930842 46930899 -72813999 + (CATA)n Simple_repeat Simple_repeat 2 58 0 1554 180 24 20 chr13 46930916 46931210 -72813688 + AluJo SINE Alu 1 295 -17 552 194 15 179 chr13 46931992 46932129 -72812769 - MER5B DNA MER1_type -7 171 74 911 144 0 8 chr13 46932129 46932261 -72812637 - FLAM_C SINE Alu -2 131 1 552 194 15 179 chr13 46932261 46932319 -72812579 - MER5B DNA MER1_type -104 74 8 1838 180 0 7 chr13 46932499 46932804 -72812094 + AluJb SINE Alu 2 304 -8 2234 138 0 0 chr13 46932901 46933212 -72811686 + AluSx SINE Alu 1 311 -1 37274 98 10 9 chr13 46933295 46939437 -72805461 + L1PA6 LINE L1 11 6153 -1 732 286 41 39 chr13 46939454 46939886 -72805012 + L1MC4a LINE L1 4735 5170 -976 1769 168 3 3 chr13 46939886 46940171 -72804727 + AluJb SINE Alu 1 285 -27 732 286 41 39 chr13 46940171 46940245 -72804653 + L1MC4a LINE L1 5170 5242 -904 3469 224 86 91 chr13 46940281 46941949 -72802949 + L1MC4a LINE L1 5276 6935 -873 16784 114 106 6 chr13 46941956 46944647 -72800251 + L1PB1 LINE L1 1 2959 -3904 1392 121 5 0 chr13 46944647 46944837 -72800061 - AluSp SINE Alu -8 305 115 2011 119 25 7 chr13 46944996 46945281 -72799617 + AluSx SINE Alu 1 290 -22 11661 199 78 19 chr13 46945281 46946165 -72798733 + L1PB1 LINE L1 2993 3823 -3039 185 0 40 0 chr13 46946165 46946190 -72798708 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 11661 199 78 19 chr13 46946190 46947115 -72797783 + L1PB1 LINE L1 3823 4692 -2170 1939 156 0 0 chr13 46947115 46947423 -72797475 + AluSx SINE Alu 1 308 0 11661 199 78 19 chr13 46947423 46948059 -72796839 + L1PB1 LINE L1 4692 5289 -1573 2579 65 0 0 chr13 46948059 46948365 -72796533 + AluY SINE Alu 1 306 -5 11661 199 78 19 chr13 46948365 46948725 -72796173 + L1PB1 LINE L1 5289 5967 -895 1128 148 46 60 chr13 46948725 46948942 -72795956 + AluSg/x SINE Alu 83 296 -16 5240 86 27 11 chr13 46948944 46949696 -72795202 + L1PB1 LINE L1 5973 6736 -131 1350 75 0 70 chr13 46949694 46949895 -72795003 + L1PB1 LINE L1 5965 6151 0 * 1176 240 168 76 chr13 46949925 46950014 -72794884 + L1MC4 LINE L1 6999 7078 -964 482 24 107 155 chr13 46950014 46950042 -72794856 + MADE1 DNA Mariner 1 29 -51 2584 51 0 0 chr13 46950042 46950337 -72794561 + AluY SINE Alu 1 295 -16 482 24 107 155 chr13 46950337 46950392 -72794506 + MADE1 DNA Mariner 29 80 0 1176 240 168 76 chr13 46950392 46951064 -72793834 + L1MC4 LINE L1 7078 7830 -212 739 243 16 57 chr13 46952299 46952546 -72792352 + L1MC4 LINE L1 7804 8040 -2 2695 142 26 19 chr13 46954027 46954456 -72790442 - MSTB1 LTR MaLR 0 432 1 197 95 0 48 chr13 46954770 46954812 -72790086 + (GAAAA)n Simple_repeat Simple_repeat 5 44 0 946 154 0 0 chr13 46955071 46955214 -72789684 + FLAM_C SINE Alu 1 143 0 401 275 132 6 chr13 46955229 46955396 -72789502 + MIR SINE MIR 20 207 -55 642 332 33 26 chr13 46955573 46955844 -72789054 + L3 LINE CR1 1220 1492 -85 433 189 72 36 chr13 46955859 46955970 -72788928 + L2 LINE L2 3197 3311 -2 721 205 39 0 chr13 46955975 46956102 -72788796 + FLAM_A SINE Alu 2 133 0 449 160 8 34 chr13 46956109 46956228 -72788670 + GA-rich Low_complexity Low_complexity 2 117 0 204 40 0 0 chr13 46956231 46956256 -72788642 + (GGGAA)n Simple_repeat Simple_repeat 2 26 0 373 298 43 0 chr13 46956599 46956693 -72788205 + L2 LINE L2 3208 3305 -8 456 254 62 31 chr13 46956811 46956941 -72787957 + L2 LINE L2 3139 3272 0 2480 60 3 0 chr13 46957188 46957489 -72787409 - AluY SINE Alu -9 302 1 4201 80 58 41 chr13 46958570 46959160 -72785738 + MER4A LTR ERV1 1 600 0 454 248 113 14 chr13 46959887 46960028 -72784870 - MER5A DNA MER1_type 0 189 35 316 293 150 0 chr13 46960767 46960907 -72783991 - MARNA DNA Mariner -164 422 262 2074 129 0 20 chr13 46960910 46961213 -72783685 + AluSx SINE Alu 1 297 -15 2342 93 0 0 chr13 46961670 46961960 -72782938 + AluSg SINE Alu 1 290 -20 903 45 0 75 chr13 46962032 46962165 -72782733 + AluY SINE Alu 188 310 -1 2073 110 3 29 chr13 46962221 46962530 -72782368 + AluSx SINE Alu 1 301 -11 705 174 66 114 chr13 46962842 46963059 -72781839 + L1MC5 LINE L1 7342 7539 -422 2020 135 0 13 chr13 46963059 46963362 -72781536 + AluSx SINE Alu 1 299 -13 705 174 66 114 chr13 46963362 46963477 -72781421 + L1MC5 LINE L1 7539 7658 -303 1008 83 15 8 chr13 46963477 46963610 -72781288 + AluSq/x SINE Alu 1 134 -179 1406 210 101 24 chr13 46963714 46964128 -72780770 - L1MD2 LINE L1 -253 6106 5661 1216 298 27 33 chr13 46964128 46964448 -72780450 - L1MC4 LINE L1 -1095 6947 6629 2300 101 0 3 chr13 46964448 46964755 -72780143 - AluSx SINE Alu -6 306 1 1216 298 27 33 chr13 46964755 46964917 -72779981 - L1MC4 LINE L1 -1413 6629 6468 2261 171 97 7 chr13 46964918 46965340 -72779558 - LOR1b LTR ERV1 -1 460 1 634 154 0 0 chr13 46965340 46965431 -72779467 - LOR1b-int LTR ERV1 0 8120 8030 * 1603 99 41 78 chr13 46965430 46965724 -72779174 - LOR1-int LTR ERV1 -2056 6064 5782 * 10028 105 32 21 chr13 46965704 46967302 -72777596 - LOR1-int LTR ERV1 -2596 5524 3908 3833 121 66 19 chr13 46967296 46968536 -72776362 - LOR1-int LTR ERV1 -4798 3322 1984 * 276 30 0 0 chr13 46968585 46968618 -72776280 + (TCC)n Simple_repeat Simple_repeat 1 33 0 1692 210 47 24 chr13 46968734 46968852 -72776046 + L1M4 LINE L1 3791 3905 -2241 1674 186 0 26 chr13 46968852 46969158 -72775740 + AluJo SINE Alu 1 298 -14 2324 112 3 0 chr13 46969160 46969464 -72775434 + AluSp SINE Alu 1 305 -8 1692 210 47 24 chr13 46969464 46969766 -72775132 + L1M4 LINE L1 3905 4224 -1922 1926 161 15 42 chr13 46969768 46970178 -72774720 + MSTB1 LTR MaLR 1 399 -33 2324 95 117 22 chr13 46970193 46970602 -72774296 - LTR7 LTR ERV1 -2 448 1 2938 235 43 25 chr13 46970605 46971578 -72773320 + L1M4 LINE L1 4214 5210 -936 1950 138 27 7 chr13 46971578 46971875 -72773023 + AluSx SINE Alu 1 303 -9 2938 235 43 25 chr13 46971875 46971999 -72772899 + L1M4 LINE L1 5210 5330 -816 1075 152 184 8 chr13 46972110 46972366 -72772532 + L1MD1 LINE L1 5920 6220 -22 1565 97 0 0 chr13 46972488 46972684 -72772214 + AluSg SINE Alu 1 196 -114 487 161 0 21 chr13 46972851 46972944 -72771954 - THE1B LTR MaLR -273 91 1 267 295 47 54 chr13 46973219 46973348 -72771550 - L2 LINE L2 -12 3260 3133 909 363 50 21 chr13 46973495 46974256 -72770642 - L2 LINE L2 -1607 1707 925 2441 59 0 0 chr13 46974873 46975163 -72769735 + AluY SINE Alu 2 291 -20 44 20 0 0 chr13 46975243 46975294 -72769604 + AT_rich Low_complexity Low_complexity 1 51 0 1570 208 211 69 chr13 46975294 46976075 -72768823 + L1MC4 LINE L1 6935 7844 -198 2136 109 0 0 chr13 46976075 46976358 -72768540 + AluY SINE Alu 13 295 -16 1570 208 211 69 chr13 46976358 46976414 -72768484 + L1MC4 LINE L1 7844 7891 -151 410 138 0 12 chr13 46976792 46976872 -72768026 - MADE1 DNA Mariner -1 79 1 444 311 63 30 chr13 46976936 46977030 -72767868 - L1MEc LINE L1 -3207 3008 2919 1633 171 10 24 chr13 46977030 46977322 -72767576 + AluJo SINE Alu 1 288 -24 444 311 63 30 chr13 46977322 46977497 -72767401 - L1MEc LINE L1 -3296 2919 2730 2018 133 0 26 chr13 46977855 46978163 -72766735 + AluSx SINE Alu 1 300 -12 312 179 95 0 chr13 46978295 46978379 -72766519 + L1MC4a LINE L1 5826 5917 -1891 882 202 66 10 chr13 46978444 46978642 -72766256 + MER3 DNA MER1_type 1 209 0 311 164 55 0 chr13 46979221 46979276 -72765622 - MIR SINE MIR -111 151 94 23 33 0 0 chr13 46979353 46979383 -72765515 + AT_rich Low_complexity Low_complexity 1 30 0 769 145 15 8 chr13 46979386 46979517 -72765381 + AluSq/x SINE Alu 1 132 -181 295 250 40 13 chr13 46979650 46979726 -72765172 - L2 LINE L2 -3 3269 3192 198 345 56 28 chr13 46979767 46979909 -72764989 - MER5A DNA MER1_type -28 161 16 233 116 0 23 chr13 46980138 46980181 -72764717 + (TCTCCC)n Simple_repeat Simple_repeat 6 47 0 9068 115 87 7 chr13 46980200 46981846 -72763052 - LOR1b-int LTR ERV1 -6141 1979 203 1873 184 24 3 chr13 46981850 46982219 -72762679 - LOR1b-int LTR ERV1 -7743 377 1 2467 143 40 22 chr13 46982219 46982672 -72762226 - LOR1b LTR ERV1 0 461 1 780 218 28 38 chr13 46982714 46982925 -72761973 - MER20 DNA MER1_type -1 218 10 566 234 38 0 chr13 46982968 46983126 -72761772 - L1MEc LINE L1 -4666 1730 1567 909 247 101 25 chr13 46983140 46983703 -72761195 - L1MEc LINE L1 -4981 1224 619 270 298 0 0 chr13 46983734 46983818 -72761080 - L2 LINE L2 -407 2906 2823 * 492 227 0 9 chr13 46983812 46983922 -72760976 - L2 LINE L2 -1416 1898 1790 544 193 47 115 chr13 46983936 46984088 -72760810 - MER58C DNA MER1_type -2240 180 42 1998 166 0 0 chr13 46984088 46984390 -72760508 + AluSx SINE Alu 1 302 -10 544 193 47 115 chr13 46984390 46984429 -72760469 - MER58C DNA MER1_type -2378 42 2 492 247 127 67 chr13 46984480 46984747 -72760151 - L2 LINE L2 -1519 1795 1513 27 0 0 0 chr13 46984754 46984781 -72760117 + AT_rich Low_complexity Low_complexity 1 27 0 36 94 0 0 chr13 46985466 46985572 -72759326 + AT_rich Low_complexity Low_complexity 1 106 0 236 266 55 9 chr13 46985576 46985685 -72759213 - L1ME LINE L1 -236 5885 5772 199 407 37 19 chr13 46985866 46985974 -72758924 + L2 LINE L2 3151 3260 -12 21 36 0 0 chr13 46986023 46986051 -72758847 + AT_rich Low_complexity Low_complexity 1 28 0 390 294 131 31 chr13 46987233 46987583 -72757315 - L2 LINE L2 -1158 2156 1772 225 379 76 11 chr13 46988313 46988590 -72756308 - L2 LINE L2 -2390 924 630 856 138 83 22 chr13 46989118 46989299 -72755599 - LTR47A LTR ERVL 0 452 261 1311 173 9 35 chr13 46990764 46991104 -72753794 - MER31A LTR ERV1 -1 484 37 606 131 0 0 chr13 46991104 46991188 -72753710 + FLAM_C SINE Alu 37 120 -23 198 167 0 0 chr13 46991194 46991230 -72753668 + (CACG)n Simple_repeat Simple_repeat 3 38 0 253 0 0 0 chr13 46991292 46991322 -72753576 - MER67A LTR ERV1 -513 30 1 1512 201 92 127 chr13 46991342 46992287 -72752611 - L1MC5 LINE L1 -111 7850 6952 278 50 25 0 chr13 46992287 46992327 -72752571 + (TG)n Simple_repeat Simple_repeat 1 41 0 1512 201 92 127 chr13 46992327 46992712 -72752186 - L1MC5 LINE L1 -1009 6952 6555 3622 149 60 6 chr13 46993234 46993896 -72751002 - MER44D DNA MER2_type 0 705 8 387 0 0 0 chr13 46993901 46993944 -72750954 + (TG)n Simple_repeat Simple_repeat 2 44 0 2105 142 7 0 chr13 46994143 46994314 -72750584 - AluSx SINE Alu -8 304 129 2234 109 13 0 chr13 46994314 46994617 -72750281 - AluSq SINE Alu -6 307 1 2105 142 7 0 chr13 46994617 46994747 -72750151 - AluSx SINE Alu -183 129 1 440 274 155 23 chr13 46995282 46995501 -72749397 - MIR SINE MIR -7 255 8 22 35 0 0 chr13 46995791 46995820 -72749078 + AT_rich Low_complexity Low_complexity 1 29 0 291 54 0 0 chr13 46995820 46995857 -72749041 + (CA)n Simple_repeat Simple_repeat 2 38 0 1539 179 3 69 chr13 46997054 46997372 -72747526 - AluJo SINE Alu -15 297 1 186 350 33 0 chr13 46997465 46997525 -72747373 - MIR SINE MIR -193 69 8 2075 86 0 0 chr13 46997584 46997852 -72747046 - AluY SINE Alu -8 303 36 205 211 0 0 chr13 46997923 46997961 -72746937 + (TA)n Simple_repeat Simple_repeat 2 39 0 407 247 24 0 chr13 46998118 46998203 -72746695 + MIR SINE MIR 2 88 -174 1328 161 18 5 chr13 46998207 46998424 -72746474 - AluJo SINE Alu -8 304 85 2304 86 0 17 chr13 46998646 46998948 -72745950 + AluSq SINE Alu 1 297 -16 1252 163 303 57 chr13 46999136 46999591 -72745307 - MLT1F1 LTR MaLR 0 567 1 364 278 105 25 chr13 46999788 46999950 -72744948 - L2 LINE L2 -1292 2022 1848 2225 88 7 16 chr13 47000368 47000675 -72744223 + AluY SINE Alu 1 304 -7 1125 88 27 0 chr13 47000862 47001009 -72743889 + AluSq/x SINE Alu 1 151 -161 1212 269 83 44 chr13 47001010 47001468 -72743430 + MLT1E2 LTR MaLR 149 626 0 675 244 115 11 chr13 47001546 47001816 -72743082 - MER5C DNA MER1_type -26 298 1 1895 107 22 88 chr13 47002114 47002318 -72742580 - THE1B LTR MaLR 0 364 167 2060 109 7 23 chr13 47002318 47002620 -72742278 + AluSx SINE Alu 10 306 -6 1895 107 22 88 chr13 47002620 47002777 -72742121 - THE1B LTR MaLR -197 167 1 631 269 88 36 chr13 47003040 47003515 -72741383 - L1ME4a LINE L1 -15 6106 5607 198 71 0 0 chr13 47003671 47003699 -72741199 + (TG)n Simple_repeat Simple_repeat 2 29 0 2558 55 0 13 chr13 47003722 47004032 -72740866 - AluSg SINE Alu -4 306 1 3343 57 11 2 chr13 47004644 47005080 -72739818 + L1PA7 LINE L1 5715 6154 0 1747 180 6 6 chr13 47005285 47005596 -72739302 + AluJb SINE Alu 1 311 -1 2045 139 33 0 chr13 47006130 47006432 -72738466 - AluSx SINE Alu 0 312 1 900 134 0 35 chr13 47006946 47007088 -72737810 + FLAM_C SINE Alu 1 137 -6 232 159 0 0 chr13 47007098 47007142 -72737756 + MER77 LTR ERV1 278 321 -284 433 320 50 70 chr13 47007142 47007545 -72737353 + L1 LINE L1 9 403 -5488 1388 150 35 0 chr13 47007652 47007879 -72737019 - MER46A DNA MER2_type 0 236 2 2805 214 76 8 chr13 47007883 47008812 -72736086 + L1 LINE L1 2888 3880 -2090 * 7100 78 11 7 chr13 47008809 47009886 -72735012 + L1P LINE L1 4303 5383 -763 181 345 17 0 chr13 47010033 47010091 -72734807 - L2 LINE L2 -2923 391 333 2136 109 0 10 chr13 47010206 47010499 -72734399 + AluSc SINE Alu 1 290 -19 2208 144 19 16 chr13 47010621 47010995 -72733903 + THE1C LTR MaLR 1 375 0 191 146 24 0 chr13 47011140 47011181 -72733717 + GA-rich Low_complexity Low_complexity 1 42 0 342 229 143 57 chr13 47011309 47011449 -72733449 + L1ME4a LINE L1 5967 6118 -3 720 278 69 33 chr13 47011953 47012259 -72732639 - MLT1I LTR MaLR 0 409 93 2075 111 0 34 chr13 47012451 47012749 -72732149 + AluSg SINE Alu 1 288 -22 201 300 91 45 chr13 47012824 47012934 -72731964 - MIR SINE MIR -30 232 118 2254 69 0 4 chr13 47013044 47013318 -72731580 + AluY SINE Alu 19 291 -20 493 266 135 60 chr13 47013566 47014002 -72730896 + MLT1H LTR MaLR 81 549 0 334 311 15 53 chr13 47014141 47014273 -72730625 - L2 LINE L2 -8 3264 3138 721 123 0 0 chr13 47014319 47014425 -72730473 + AluJb SINE Alu 199 304 -8 12686 26 9 0 chr13 47014679 47016944 -72727954 + L1PA7 LINE L1 3879 6152 -2 5084 197 19 41 chr13 47016953 47017432 -72727466 + L1MB2 LINE L1 4015 4503 -1668 2400 88 3 0 chr13 47017432 47017739 -72727159 + AluY SINE Alu 1 308 -3 5084 197 19 41 chr13 47017739 47018829 -72726069 + L1MB2 LINE L1 4503 5563 -608 2209 103 13 3 chr13 47018831 47019133 -72725765 + AluSx SINE Alu 1 305 -7 1084 135 0 0 chr13 47019133 47019289 -72725609 + AluSg/x SINE Alu 132 287 -23 2222 184 63 10 chr13 47019301 47019790 -72725108 + L1MB2 LINE L1 5550 6064 -107 260 111 22 0 chr13 47019895 47019940 -72724958 + CT-rich Low_complexity Low_complexity 2 47 0 514 237 168 63 chr13 47020015 47020367 -72724531 + MER77 LTR ERV1 299 670 -36 23 33 0 0 chr13 47020410 47020440 -72724458 + AT_rich Low_complexity Low_complexity 1 30 0 2596 61 0 0 chr13 47020775 47021086 -72723812 - AluY SINE Alu 0 311 1 2299 78 7 29 chr13 47021492 47021799 -72723099 - AluY SINE Alu -11 300 1 1133 114 23 11 chr13 47021925 47022100 -72722798 + AluSg/x SINE Alu 135 311 -1 6918 81 8 26 chr13 47022523 47023327 -72721571 - L1PA11 LINE L1 0 6174 5376 2249 116 0 0 chr13 47023327 47023628 -72721270 - AluSx SINE Alu -11 301 1 6918 81 8 26 chr13 47023628 47024113 -72720785 - L1PA11 LINE L1 -798 5376 4883 2547 42 0 3 chr13 47026506 47026795 -72718103 - AluY SINE Alu -11 300 13 283 81 0 0 chr13 47026795 47026832 -72718066 - AluY SINE Alu -266 37 1 1977 144 7 0 chr13 47027362 47027646 -72717252 + AluSx SINE Alu 1 286 -26 718 104 87 0 chr13 47027649 47027764 -72717134 + L1MA4A LINE L1 6178 6302 -1 1049 285 166 9 chr13 47028275 47028970 -72715928 + L2 LINE L2 2476 3280 -33 198 0 0 0 chr13 47029685 47029707 -72715191 + (A)n Simple_repeat Simple_repeat 1 22 0 324 226 196 10 chr13 47029807 47029909 -72714989 - L2 LINE L2 0 3313 3193 * 642 317 149 32 chr13 47029906 47030246 -72714652 - L3 LINE CR1 -779 798 499 1940 137 0 7 chr13 47030246 47030545 -72714353 + AluJb SINE Alu 3 299 -13 642 317 149 32 chr13 47030545 47030741 -72714157 - L3 LINE CR1 -1078 499 199 2214 62 6 84 chr13 47031047 47031369 -72713529 + AluSp SINE Alu 1 297 -16 2629 53 0 0 chr13 47031584 47031886 -72713012 + AluSg SINE Alu 1 302 -8 775 171 26 0 chr13 47032375 47032492 -72712406 + FLAM_A SINE Alu 5 124 -9 419 202 57 65 chr13 47033244 47033338 -72711560 - L2 LINE L2 0 3313 3219 2269 103 10 6 chr13 47033338 47033650 -72711248 + AluSq SINE Alu 1 313 0 419 202 57 65 chr13 47033650 47033679 -72711219 - L2 LINE L2 -94 3219 3191 207 0 0 0 chr13 47033955 47033978 -72710920 + (TAA)n Simple_repeat Simple_repeat 3 25 0 378 230 97 97 chr13 47034784 47034980 -72709918 + LTR16A LTR ERVL 1 196 -254 392 253 71 55 chr13 47035109 47035291 -72709607 + MER5A DNA MER1_type 4 188 -1 1010 169 0 33 chr13 47035426 47035609 -72709289 + FRAM SINE Alu 1 176 0 2035 230 32 32 chr13 47035642 47036199 -72708699 + L1ME3 LINE L1 5598 6154 -8 392 279 88 14 chr13 47036496 47036643 -72708255 + L1MC4 LINE L1 7690 7847 -195 2544 53 0 0 chr13 47036722 47037022 -72707876 + AluY SINE Alu 1 300 -11 311 291 136 0 chr13 47037036 47037139 -72707759 + MIR3 SINE MIR 69 185 -23 438 335 60 9 chr13 47037621 47037854 -72707044 + MIR SINE MIR 18 262 0 268 140 60 0 chr13 47038849 47038899 -72705999 + MIR SINE MIR 90 142 -120 272 304 25 0 chr13 47038902 47038981 -72705917 - L2 LINE L2 -5 3308 3228 2210 114 139 25 chr13 47039082 47039486 -72705412 - LTR7 LTR ERV1 0 450 1 204 40 0 0 chr13 47039538 47039563 -72705335 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1670 166 0 18 chr13 47039563 47039846 -72705052 - AluJo SINE Alu -34 278 1 370 229 82 35 chr13 47039847 47040017 -72704881 + L1M4 LINE L1 3196 3373 -2773 367 359 20 31 chr13 47040156 47040351 -72704547 - LTR16B LTR ERVL -238 226 34 1596 138 117 50 chr13 47040363 47040646 -72704252 - AluJb SINE Alu 0 302 1 4704 144 25 50 chr13 47040646 47041360 -72703538 - L1MB3 LINE L1 -32 6151 5421 2083 139 13 0 chr13 47041360 47041662 -72703236 - AluSx SINE Alu -6 306 1 4704 144 25 50 chr13 47041662 47041725 -72703173 - L1MB3 LINE L1 -762 5421 5358 2187 131 0 0 chr13 47041725 47042030 -72702868 - AluSx SINE Alu -7 305 1 4704 144 25 50 chr13 47042030 47042172 -72702726 - L1MB3 LINE L1 -825 5358 5254 442 217 48 0 chr13 47042286 47042369 -72702529 + MER45A DNA AcHobo 90 176 -2 279 0 0 0 chr13 47042575 47042606 -72702292 + (TA)n Simple_repeat Simple_repeat 1 31 0 520 272 42 68 chr13 47043032 47043223 -72701675 - MLT1H1 LTR MaLR -289 266 105 1540 114 14 0 chr13 47043285 47043505 -72701393 - L1PA7 LINE L1 -3408 2738 2516 20172 75 3 2 chr13 47043505 47043591 -72701307 + L1PA7 LINE L1 2752 2836 -3318 2270 83 7 10 chr13 47043591 47043893 -72701005 + AluSp SINE Alu 1 301 -12 20172 75 3 2 chr13 47043893 47047200 -72697698 + L1PA7 LINE L1 2836 6151 -3 2242 180 26 83 chr13 47047605 47048150 -72696748 + MLT2B3 LTR ERVL 1 514 -40 472 192 19 58 chr13 47048216 47048320 -72696578 - MLT1H1 LTR MaLR -455 100 1 2185 121 7 0 chr13 47048415 47048721 -72696177 - AluSx SINE Alu -2 310 3 638 143 31 0 chr13 47049064 47049162 -72695736 + AluJb SINE Alu 206 306 -6 2333 67 3 3 chr13 47049572 47049911 -72694987 + AluY SINE Alu 1 339 0 445 131 0 0 chr13 47050729 47050790 -72694108 - Tigger5 DNA MER2_type 0 2323 2263 312 161 16 16 chr13 47050792 47050854 -72694044 + Tigger5 DNA MER2_type 2248 2309 -14 359 192 39 13 chr13 47050858 47050936 -72693962 - Tigger5 DNA MER2_type -2243 80 1 250 280 48 36 chr13 47051609 47051635 -72693263 - L1MA10 LINE L1 -1 6333 6308 3973 212 25 17 chr13 47051635 47052412 -72692486 - L1ME1 LINE L1 -17 6149 5359 2256 150 33 25 chr13 47052412 47052773 -72692125 + THE1B LTR MaLR 1 364 0 3973 212 25 17 chr13 47052773 47052949 -72691949 - L1ME1 LINE L1 -807 5359 5186 877 223 0 21 chr13 47052953 47053146 -72691752 - MLT1A2 LTR MaLR 0 374 186 1785 181 36 80 chr13 47053151 47053565 -72691333 - MSTD LTR MaLR 0 396 1 2544 117 42 70 chr13 47053568 47054022 -72690876 - LTR59 LTR ERV1 -2 595 155 488 169 24 0 chr13 47054026 47054109 -72690789 - AluY SINE Alu -8 303 219 4259 65 73 39 chr13 47054109 47054697 -72690201 - LTR14B LTR ERVK 0 608 1 1791 86 0 0 chr13 47054702 47054924 -72689974 - AluSq SINE Alu -91 222 1 968 171 0 57 chr13 47054924 47055100 -72689798 - LTR59 LTR ERV1 -431 166 1 * 1013 186 46 5 chr13 47055100 47055279 -72689619 - MLT1A2 LTR MaLR -187 187 1 2560 226 38 27 chr13 47055279 47055992 -72688906 - L1ME1 LINE L1 -963 5183 4463 5895 94 23 3 chr13 47056007 47056466 -72688432 + L1PB2 LINE L1 5223 5709 -442 2302 55 48 3 chr13 47056466 47056756 -72688142 + AluY SINE Alu 1 303 -8 5895 94 23 3 chr13 47056756 47057173 -72687725 + L1PB2 LINE L1 5709 6116 -35 3651 98 12 39 chr13 47057189 47057808 -72687090 - MER4B LTR ERV1 -7 772 3 1192 221 88 16 chr13 47057808 47058183 -72686715 - L1ME1 LINE L1 -1677 4469 4068 1978 161 72 11 chr13 47058239 47058588 -72686310 - MLT1B LTR MaLR -20 370 1 970 175 57 64 chr13 47058590 47058870 -72686028 - L1ME1 LINE L1 -2104 4042 3765 377 165 12 59 chr13 47058976 47059061 -72685837 + HAL1 LINE L1 2320 2400 -107 702 211 0 0 chr13 47059118 47059251 -72685647 + FLAM_C SINE Alu 1 133 0 23 0 0 0 chr13 47059275 47059298 -72685600 + AT_rich Low_complexity Low_complexity 1 23 0 240 35 0 0 chr13 47060521 47060550 -72684348 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 1697 96 4 0 chr13 47060550 47060780 -72684118 - AluSx SINE Alu -29 283 53 187 300 0 78 chr13 47060794 47060884 -72684014 - MIR SINE MIR -4 258 176 2890 3 0 0 chr13 47061878 47062184 -72682714 - AluYa5 SINE Alu -5 306 1 210 274 143 36 chr13 47062427 47062511 -72682387 - MIR SINE MIR -162 100 8 21 57 0 0 chr13 47062656 47062691 -72682207 + AT_rich Low_complexity Low_complexity 1 35 0 1543 170 28 28 chr13 47062694 47062982 -72681916 - AluJb SINE Alu -24 288 1 270 239 0 0 chr13 47063064 47063135 -72681763 + (TA)n Simple_repeat Simple_repeat 2 72 0 1973 158 69 17 chr13 47063461 47063808 -72681090 + MLT1A1 LTR MaLR 1 365 0 365 191 206 8 chr13 47063865 47063991 -72680907 + MIR SINE MIR 35 185 -77 1151 214 58 108 chr13 47064176 47064727 -72680171 - LTR8 LTR ERV1 -13 714 26 1138 199 40 16 chr13 47064734 47064985 -72679913 - LTR8 LTR ERV1 -434 257 1 191 297 0 31 chr13 47065030 47065094 -72679804 - MIR SINE MIR -26 236 175 694 257 117 23 chr13 47065235 47065492 -72679406 - L2 LINE L2 -5 3308 3028 1218 160 10 15 chr13 47065506 47065712 -72679186 + AluJo SINE Alu 90 294 -18 278 321 12 0 chr13 47066028 47066109 -72678789 + L2 LINE L2 2261 2342 -972 202 356 76 15 chr13 47066123 47066255 -72678643 + L2 LINE L2 3173 3312 -1 193 122 0 41 chr13 47067005 47067054 -72677844 + (TCTCCC)n Simple_repeat Simple_repeat 3 49 0 21 57 0 0 chr13 47067803 47067838 -72677060 + AT_rich Low_complexity Low_complexity 1 35 0 1211 162 32 112 chr13 47068740 47068841 -72676057 + Charlie1b DNA MER1_type 5 112 -2649 2218 123 0 0 chr13 47068841 47069141 -72675757 - AluSx SINE Alu -12 300 1 1211 162 32 112 chr13 47069141 47069574 -72675324 + Charlie1b DNA MER1_type 112 496 -27 2039 123 10 17 chr13 47069813 47070113 -72674785 - AluSx SINE Alu -14 298 1 1188 170 0 0 chr13 47070500 47070682 -72674216 + AluJo SINE Alu 1 182 -130 1984 108 35 3 chr13 47071493 47071780 -72673118 - AluSp SINE Alu -17 296 1 2117 127 0 0 chr13 47072036 47072335 -72672563 + AluSx SINE Alu 1 299 -13 180 278 19 56 chr13 47072335 47072443 -72672455 + L2 LINE L2 3043 3146 -167 452 118 147 0 chr13 47072626 47072694 -72672204 - AluJ/FLAM SINE Alu -233 79 2 2487 87 0 0 chr13 47073199 47073511 -72671387 + AluSx SINE Alu 1 312 0 27 0 0 0 chr13 47073557 47073584 -72671314 + AT_rich Low_complexity Low_complexity 1 27 0 202 229 0 0 chr13 47073845 47073893 -72671005 + T-rich Low_complexity Low_complexity 1 48 0 2048 146 0 0 chr13 47075791 47076092 -72668806 + AluSx SINE Alu 1 301 -11 1632 136 7 66 chr13 47076113 47076400 -72668498 + AluJo SINE Alu 24 293 -19 328 78 0 39 chr13 47076990 47077041 -72667857 - L1MB2 LINE L1 -2 6169 6121 203 378 36 40 chr13 47077179 47077401 -72667497 + L2 LINE L2 2826 3046 -226 302 333 83 0 chr13 47077890 47078010 -72666888 + L2 LINE L2 3179 3308 -5 2021 141 0 7 chr13 47079383 47079680 -72665218 + AluJb SINE Alu 2 296 -16 255 211 18 18 chr13 47079693 47079750 -72665148 + L2 LINE L2 3243 3299 -14 1029 207 225 20 chr13 47079824 47080285 -72664613 - L1ME3A LINE L1 0 6170 5601 560 265 20 33 chr13 47080307 47080458 -72664440 + MER46C DNA MER2_type 189 337 -1 302 281 50 33 chr13 47080752 47080873 -72664025 - MER5A DNA MER1_type -65 124 2 2474 93 0 0 chr13 47080889 47081201 -72663697 + AluSq SINE Alu 1 312 -1 2845 85 125 5 chr13 47081372 47081772 -72663126 + LTR7 LTR ERV1 1 448 -2 3130 78 64 0 chr13 47082349 47082770 -72662128 + LTR7 LTR ERV1 1 448 -2 19416 101 14 30 chr13 47082772 47085816 -72659082 + HERVH LTR ERV1 1 2995 -4718 5675 104 28 2 chr13 47085795 47086628 -72658270 + HERVH LTR ERV1 3140 3993 -3720 * 4623 131 0 1 chr13 47086630 47087293 -72657605 + HERVH LTR ERV1 4488 5149 -2564 1431 120 19 0 chr13 47087294 47087510 -72657388 + HERVH LTR ERV1 5600 5819 -1894 2438 96 48 13 chr13 47087510 47087887 -72657011 + HERVH LTR ERV1 7324 7713 0 2908 86 103 0 chr13 47087887 47088293 -72656605 + LTR7 LTR ERV1 1 448 -2 472 221 47 116 chr13 47088300 47088490 -72656408 + L2 LINE L2 3131 3307 -6 281 127 0 73 chr13 47088536 47088591 -72656307 - MER117 DNA MER1_type -80 117 67 1687 176 14 3 chr13 47088946 47089236 -72655662 + AluJb SINE Alu 1 293 -19 1397 141 0 65 chr13 47089292 47089555 -72655343 + MLT1B LTR MaLR 1 246 -144 255 33 0 0 chr13 47089567 47089597 -72655301 + MLT1B LTR MaLR 361 390 0 285 195 81 11 chr13 47089815 47089902 -72654996 - L1MC5 LINE L1 -36 7925 7833 2197 117 3 0 chr13 47089980 47090278 -72654620 - AluSx SINE Alu -13 299 1 3449 154 34 52 chr13 47090546 47091119 -72653779 - L1MB7 LINE L1 -16 6168 5609 1877 156 0 17 chr13 47091119 47091407 -72653491 - AluSx SINE Alu -25 287 5 3449 154 34 52 chr13 47091407 47091519 -72653379 - L1MB7 LINE L1 -575 5609 5496 2225 182 15 16 chr13 47091521 47092122 -72652776 - L1MB3 LINE L1 -201 6480 4703 2427 242 10 4 chr13 47092122 47092639 -72652259 - L1MB3 LINE L1 -5634 908 389 2397 140 35 14 chr13 47092642 47093067 -72651831 + MER61C LTR ERV1 13 430 -4 951 151 54 96 chr13 47093071 47093310 -72651588 + MER61C-int LTR ERV1 2 230 -4987 * 3058 111 18 47 chr13 47093289 47093802 -72651096 + MER61C-int LTR ERV1 343 840 -4377 28736 91 31 31 chr13 47093802 47097468 -72647430 + MER61C-int LTR ERV1 958 4623 -594 2003 141 10 0 chr13 47097468 47097759 -72647139 - AluSx SINE Alu -18 294 1 28736 91 31 31 chr13 47097759 47098354 -72646544 + MER61C-int LTR ERV1 4623 5217 0 2061 151 78 20 chr13 47098372 47098770 -72646128 + MER61C LTR ERV1 14 434 0 1148 242 61 37 chr13 47098771 47099147 -72645751 - L1MB3 LINE L1 -6153 389 5 1489 193 61 4 chr13 47099532 47099812 -72645086 - AluJb SINE Alu -16 296 1 240 179 0 119 chr13 47099815 47099882 -72645016 - L2 LINE L2 0 3272 3214 631 224 48 0 chr13 47100374 47100499 -72644399 + FLAM_C SINE Alu 2 132 -1 2397 74 0 3 chr13 47100769 47101065 -72643833 + AluY SINE Alu 1 295 -16 1575 211 103 44 chr13 47101153 47101628 -72643270 + MLT1D LTR MaLR 3 505 0 415 220 92 52 chr13 47102191 47102364 -72642534 + HAL1 LINE L1 2272 2451 -56 25 31 0 0 chr13 47102400 47102432 -72642466 + AT_rich Low_complexity Low_complexity 1 32 0 1751 164 20 13 chr13 47103398 47103703 -72641195 - AluJo SINE Alu 0 312 6 388 226 38 9 chr13 47104266 47104372 -72640526 + LTR41 LTR ERVL 70 178 -595 245 305 0 0 chr13 47104815 47104897 -72640001 + L1ME4a LINE L1 5802 5883 -238 23 33 0 0 chr13 47105048 47105078 -72639820 + AT_rich Low_complexity Low_complexity 1 30 0 1645 146 71 11 chr13 47105459 47105739 -72639159 + AluSx SINE Alu 4 300 -12 2462 93 0 0 chr13 47106112 47106424 -72638474 + AluSx SINE Alu 1 312 0 202 229 0 0 chr13 47106737 47106785 -72638113 + T-rich Low_complexity Low_complexity 1 48 0 2649 34 0 0 chr13 47108543 47108839 -72636059 + AluY SINE Alu 1 296 -15 410 296 146 39 chr13 47109947 47109977 -72634921 + MIR SINE MIR 5 30 -232 2033 133 10 26 chr13 47109977 47110285 -72634613 + AluSx SINE Alu 1 303 -9 410 296 146 39 chr13 47110285 47110487 -72634411 + MIR SINE MIR 30 262 0 345 309 29 7 chr13 47110672 47110808 -72634090 + L1ME4a LINE L1 5971 6109 -12 231 183 33 0 chr13 47110815 47110875 -72634023 + (TA)n Simple_repeat Simple_repeat 1 62 0 2024 128 3 10 chr13 47110875 47111163 -72633735 - AluSx SINE Alu -26 286 1 1932 125 12 65 chr13 47111165 47111486 -72633412 - AluSg SINE Alu -6 304 1 21 0 0 0 chr13 47111488 47111509 -72633389 + AT_rich Low_complexity Low_complexity 1 21 0 28 86 0 0 chr13 47111842 47111912 -72632986 + AT_rich Low_complexity Low_complexity 1 70 0 2116 123 14 0 chr13 47112764 47113056 -72631842 + AluSx SINE Alu 1 296 -16 2198 84 7 0 chr13 47113080 47113364 -72631534 + AluSp SINE Alu 1 286 -27 2363 98 0 0 chr13 47113566 47113862 -72631036 + AluSg SINE Alu 1 296 -14 258 111 89 0 chr13 47113881 47113926 -72630972 - MER113 DNA MER1_type? -438 83 35 461 296 106 25 chr13 47113947 47114146 -72630752 + MIR SINE MIR 46 260 -2 223 154 51 0 chr13 47114681 47114720 -72630178 + MIR SINE MIR 38 78 -130 222 300 20 0 chr13 47114758 47114808 -72630090 + L3 LINE CR1 1518 1568 -9 238 267 0 0 chr13 47115010 47115055 -72629843 + L2 LINE L2 3223 3267 -5 1380 182 6 64 chr13 47115445 47115758 -72629140 + AluJb SINE Alu 1 295 -17 917 226 20 10 chr13 47116855 47117059 -72627839 + MER58A DNA MER1_type 19 224 0 866 242 104 76 chr13 47117619 47118093 -72626805 - L2 LINE L2 0 3313 2772 2357 74 3 16 chr13 47118093 47118404 -72626494 - AluSp SINE Alu -6 307 1 866 242 104 76 chr13 47118404 47118687 -72626211 - L2 LINE L2 -541 2772 2498 491 81 0 0 chr13 47119612 47119674 -72625224 - Alu SINE Alu -247 63 2 195 264 0 38 chr13 47119889 47119942 -72624956 - L2 LINE L2 -218 3054 3004 183 182 0 0 chr13 47120408 47120441 -72624457 + L2 LINE L2 2929 2961 -352 2399 70 3 13 chr13 47121928 47122242 -72622656 - AluY SINE Alu 0 311 1 2392 148 50 0 chr13 47122242 47122646 -72622252 - L1MB3 LINE L1 -41 6142 5719 32 0 0 0 chr13 47123663 47123695 -72621203 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr13 47123737 47123759 -72621139 + AT_rich Low_complexity Low_complexity 1 22 0 1082 196 34 0 chr13 47124107 47124311 -72620587 - MIR SINE MIR -39 223 13 630 167 0 0 chr13 47124386 47124506 -72620392 - HSMAR2 DNA Mariner -1 1301 1182 521 238 89 92 chr13 47124703 47125017 -72619881 - HAL1 LINE L1 0 2507 2193 1798 137 83 11 chr13 47125017 47125295 -72619603 + AluSp SINE Alu 1 298 -15 521 238 89 92 chr13 47125295 47125371 -72619527 - HAL1 LINE L1 -314 2193 2118 389 151 187 43 chr13 47125411 47125550 -72619348 - MER112 DNA MER1_type -96 164 6 * 1792 201 3 12 chr13 47125537 47125865 -72619033 + MLT1B LTR MaLR 64 388 -2 1158 280 23 33 chr13 47125902 47126295 -72618603 + L2 LINE L2 1043 1431 -1883 2278 115 0 0 chr13 47126950 47127262 -72617636 - AluSx SINE Alu 0 312 1 285 228 101 13 chr13 47127445 47127524 -72617374 - L2 LINE L2 -1 3271 3186 1568 199 85 47 chr13 47127700 47128148 -72616750 + MLT1C LTR MaLR 3 467 0 309 330 0 9 chr13 47128481 47128587 -72616311 - L3 LINE CR1 -207 1370 1266 2617 68 0 0 chr13 47128786 47129097 -72615801 - AluSx SINE Alu -1 311 1 314 239 137 17 chr13 47129147 47129264 -72615634 - L1ME4a LINE L1 -23 6098 5968 503 327 75 10 chr13 47129265 47129464 -72615434 - L3 LINE CR1 -354 1223 1012 514 268 124 0 chr13 47129713 47129866 -72615032 - MIR SINE MIR -90 172 1 2708 166 36 24 chr13 47129987 47130691 -72614207 + L1MC3 LINE L1 5728 6657 -1128 1783 189 9 96 chr13 47130727 47130866 -72614032 - MSTB LTR MaLR -15 411 262 548 202 182 0 chr13 47130866 47130965 -72613933 - FLAM_C SINE Alu -16 117 1 1783 189 9 96 chr13 47130965 47131275 -72613623 - MSTB LTR MaLR -164 262 1 2117 103 7 0 chr13 47131277 47131589 -72613309 + AluSx SINE Alu 1 314 0 428 178 75 9 chr13 47131596 47131703 -72613195 + L1MC3 LINE L1 7180 7293 -492 1556 176 61 71 chr13 47131705 47131871 -72613027 + MLT1B LTR MaLR 1 167 -223 8423 13 0 0 chr13 47131871 47132851 -72612047 - L1PA2 LINE L1 0 6155 5176 1556 176 61 71 chr13 47132851 47133077 -72611821 + MLT1B LTR MaLR 167 389 -1 1425 383 78 0 chr13 47133079 47133381 -72611517 + L1MC3 LINE L1 7295 7639 -146 1965 118 22 7 chr13 47133381 47133652 -72611246 - AluSx SINE Alu -37 275 1 1425 383 78 0 chr13 47133652 47133762 -72611136 + L1MC3 LINE L1 7639 7739 -46 1120 101 34 45 chr13 47133763 47133942 -72610956 - AluJb SINE Alu -52 260 84 358 278 0 26 chr13 47134019 47134134 -72610764 - HAL1 LINE L1 -349 2158 2047 278 353 45 8 chr13 47134568 47134701 -72610197 - L3 LINE CR1 -1011 566 429 186 43 0 0 chr13 47136547 47136570 -72608328 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 646 257 147 64 chr13 47136573 47136824 -72608074 - L2 LINE L2 -17 3296 3007 2282 102 0 7 chr13 47136824 47137127 -72607771 + AluSx SINE Alu 1 301 -11 646 257 147 64 chr13 47137127 47137221 -72607677 - L2 LINE L2 -306 3007 2922 424 250 0 0 chr13 47137242 47137334 -72607564 - MER93a LTR ERV1 -304 98 7 184 242 0 97 chr13 47137404 47137466 -72607432 - L2 LINE L2 -232 3040 2985 571 135 101 0 chr13 47137497 47137586 -72607312 - Tigger7 DNA MER2_type 0 2487 2390 * 1406 217 15 0 chr13 47137585 47137848 -72607050 - Tigger7 DNA MER2_type -2220 267 1 884 152 0 0 chr13 47137933 47138058 -72606840 + FLAM_C SINE Alu 1 125 -18 279 0 0 0 chr13 47138062 47138093 -72606805 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1209 164 13 44 chr13 47138737 47138962 -72605936 + AluJo SINE Alu 65 282 -30 882 57 0 0 chr13 47138962 47139068 -72605830 - AluSp/q SINE Alu -8 305 200 239 266 16 16 chr13 47139970 47140034 -72604864 + MIR SINE MIR 90 153 -109 234 103 0 176 chr13 47140037 47140105 -72604793 - L2 LINE L2 -1 3312 3257 207 296 0 28 chr13 47140103 47140174 -72604724 + MIR SINE MIR 156 224 -38 * 2409 89 0 3 chr13 47140387 47140691 -72604207 - AluSq SINE Alu -10 303 1 334 301 80 9 chr13 47141401 47141514 -72603384 + L2 LINE L2 3137 3257 -15 564 129 0 0 chr13 47141544 47141645 -72603253 + (TGGA)n Simple_repeat Simple_repeat 2 102 0 771 270 25 0 chr13 47142817 47143021 -72601877 + MIR SINE MIR 3 211 -51 1801 130 0 4 chr13 47143244 47143514 -72601384 - AluSg SINE Alu 0 310 42 2677 26 0 7 chr13 47143614 47143918 -72600980 + L1PA4 LINE L1 5851 6152 -3 358 308 51 62 chr13 47143999 47144194 -72600704 - LTR16B LTR ERVL -238 226 34 1837 92 117 50 chr13 47144206 47144489 -72600409 - AluJo SINE Alu 0 302 1 27 0 0 0 chr13 47144875 47144902 -72599996 + AT_rich Low_complexity Low_complexity 1 27 0 964 222 64 13 chr13 47146237 47146471 -72598427 - MIR SINE MIR -3 259 14 1906 106 16 4 chr13 47147337 47147592 -72597306 + AluSg SINE Alu 1 258 -52 252 0 0 0 chr13 47147933 47147961 -72596937 + (CCTAT)n Simple_repeat Simple_repeat 4 31 0 1992 128 0 4 chr13 47149617 47149898 -72595000 + AluSx SINE Alu 1 280 -32 2285 110 0 3 chr13 47150036 47150345 -72594553 + AluSg SINE Alu 1 308 -2 502 180 30 20 chr13 47150509 47150609 -72594289 - FLAM_C SINE Alu -3 140 40 310 154 200 0 chr13 47150609 47150674 -72594224 - MER81 DNA DNA -36 78 1 2329 84 7 0 chr13 47151266 47151565 -72593333 - AluSq SINE Alu -12 301 1 33 25 0 0 chr13 47153027 47153067 -72591831 + AT_rich Low_complexity Low_complexity 1 40 0 527 257 23 39 chr13 47153067 47153310 -72591588 - L1ME1 LINE L1 -238 5928 5690 232 347 41 31 chr13 47153345 47153443 -72591455 - L2 LINE L2 -33 3239 3141 2338 92 10 0 chr13 47153469 47153773 -72591125 + AluSx SINE Alu 6 312 0 369 0 0 0 chr13 47153787 47153828 -72591070 + (TA)n Simple_repeat Simple_repeat 2 42 0 788 143 63 8 chr13 47154129 47154255 -72590643 - FLAM_A SINE Alu 0 133 1 2139 118 0 3 chr13 47155026 47155322 -72589576 + AluSx SINE Alu 1 295 -17 638 260 77 20 chr13 47155443 47155639 -72589259 - MIR SINE MIR 0 262 56 336 292 0 11 chr13 47155895 47155984 -72588914 + MIR3 SINE MIR 113 200 -8 965 209 100 7 chr13 47156208 47156476 -72588422 - L1MA6 LINE L1 -9 6291 6001 875 316 30 12 chr13 47157351 47157690 -72587208 + L1MC4a LINE L1 5263 5607 -2201 5038 234 18 12 chr13 47157695 47158855 -72586043 + MER69B DNA AcHobo 1 1167 -59 236 185 77 15 chr13 47159474 47159539 -72585359 + MER69B DNA AcHobo 1150 1218 -8 931 246 98 27 chr13 47159583 47159920 -72584978 + L1MC4a LINE L1 5638 5998 -1810 1745 122 103 4 chr13 47160060 47160331 -72584567 - AluSx SINE Alu -14 298 1 263 143 20 0 chr13 47160888 47160937 -72583961 + L1MA8 LINE L1 5319 5368 -778 845 172 14 0 chr13 47160944 47161089 -72583809 + FRAM SINE Alu 20 166 -10 5163 137 35 12 chr13 47161089 47161509 -72583389 + L1MA8 LINE L1 5359 5768 -523 243 0 0 0 chr13 47161509 47161536 -72583362 + (CA)n Simple_repeat Simple_repeat 2 28 0 5163 137 35 12 chr13 47161536 47162004 -72582894 + L1MA8 LINE L1 5768 6267 -24 2277 109 0 7 chr13 47162082 47162386 -72582512 + AluSg SINE Alu 1 302 -8 204 304 217 11 chr13 47162840 47162932 -72581966 + L2 LINE L2 3162 3272 0 2864 138 12 33 chr13 47163079 47163252 -72581646 - L1MB5 LINE L1 -1 6173 5998 2673 133 30 30 chr13 47163252 47163638 -72581260 + MSTA LTR MaLR 1 390 -38 1795 155 3 11 chr13 47163638 47163944 -72580954 - AluJb SINE Alu 0 304 1 2673 133 30 30 chr13 47163944 47163984 -72580914 + MSTA LTR MaLR 389 428 0 2864 138 12 33 chr13 47163984 47164295 -72580603 - L1MB5 LINE L1 -176 5998 5699 355 286 85 20 chr13 47165015 47165214 -72579684 + L1ME LINE L1 5564 5775 -346 1925 127 4 0 chr13 47165487 47165762 -72579136 + AluSp SINE Alu 5 280 -33 372 43 0 0 chr13 47165762 47165808 -72579090 + (CA)n Simple_repeat Simple_repeat 1 46 0 770 245 81 66 chr13 47166256 47166597 -72578301 - L2 LINE L2 -1 3312 2957 2210 86 48 0 chr13 47166597 47166889 -72578009 + AluSp SINE Alu 3 308 -5 770 245 81 66 chr13 47166889 47167068 -72577830 - L2 LINE L2 -356 2957 2782 1573 126 0 9 chr13 47167842 47168065 -72576833 + AluSq SINE Alu 1 221 -92 1127 168 6 0 chr13 47168066 47168239 -72576659 + AluJo/FRAM SINE Alu 129 302 -10 1308 250 145 38 chr13 47168239 47168342 -72576556 - L2 LINE L2 -1091 2223 2132 2287 110 13 0 chr13 47168342 47168642 -72576256 + AluSx SINE Alu 1 304 -8 1308 250 145 38 chr13 47168642 47169138 -72575760 - L2 LINE L2 -1182 2132 1560 417 254 0 29 chr13 47169265 47169403 -72575495 + L1ME4a LINE L1 5988 6121 0 1912 113 3 56 chr13 47169843 47170189 -72574709 + AluSq SINE Alu 1 330 0 5978 147 22 45 chr13 47170537 47170590 -72574308 - L1MC2 LINE L1 -8 6336 6283 2127 106 0 82 chr13 47170590 47170930 -72573968 + AluSx SINE Alu 1 312 0 5978 147 22 45 chr13 47170930 47171933 -72572965 - L1MC2 LINE L1 -61 6283 5306 2013 97 0 88 chr13 47171933 47172252 -72572646 - AluSg SINE Alu -19 291 1 5978 147 22 45 chr13 47172252 47172371 -72572527 - L1MC2 LINE L1 -1038 5306 5186 199 240 156 101 chr13 47172567 47172632 -72572266 - MIR SINE MIR -25 237 177 2353 86 0 0 chr13 47172632 47172922 -72571976 + AluSg SINE Alu 2 291 -19 199 240 156 101 chr13 47172922 47173035 -72571863 - MIR SINE MIR -85 177 49 1053 187 0 12 chr13 47174247 47174413 -72570485 + FRAM SINE Alu 1 164 -2 2342 92 0 3 chr13 47174501 47174796 -72570102 + AluSg SINE Alu 1 294 -16 216 212 99 113 chr13 47174829 47174980 -72569918 + MER5A DNA MER1_type 1 149 -40 1620 202 57 95 chr13 47175366 47175686 -72569212 + MLT1D LTR MaLR 1 332 -173 2114 91 24 24 chr13 47175686 47175983 -72568915 + AluSg SINE Alu 1 297 -13 1620 202 57 95 chr13 47175983 47175995 -72568903 + MLT1D LTR MaLR 332 343 -162 2204 106 0 28 chr13 47175995 47176315 -72568583 + AluSx SINE Alu 1 311 -1 1620 202 57 95 chr13 47176315 47176505 -72568393 + MLT1D LTR MaLR 343 504 -1 320 302 12 0 chr13 47176708 47176794 -72568104 - MER5B DNA MER1_type -91 87 1 4701 235 107 103 chr13 47177674 47178875 -72566023 - HAL1 LINE L1 -12 2495 1097 1364 98 0 5 chr13 47178875 47179059 -72565839 - AluSg/x SINE Alu 0 310 128 4701 235 107 103 chr13 47179059 47180023 -72564875 - HAL1 LINE L1 -1410 1097 138 738 206 44 22 chr13 47180087 47180267 -72564631 + HAL1 LINE L1 1348 1531 -976 2197 99 3 45 chr13 47180411 47180724 -72564174 - AluSg SINE Alu -9 301 2 369 211 88 35 chr13 47181122 47181293 -72563605 - Charlie7 DNA MER1_type -1 2611 2432 303 163 0 75 chr13 47181263 47181343 -72563555 - Charlie7 DNA MER1_type -2501 111 38 * 235 274 44 25 chr13 47181350 47181455 -72563443 + MER5A DNA MER1_type 7 124 -65 1784 119 236 9 chr13 47181476 47181819 -72563079 + MER61C LTR ERV1 14 434 0 2376 82 3 0 chr13 47181917 47182211 -72562687 + AluSg SINE Alu 1 295 -15 27 0 0 0 chr13 47182390 47182417 -72562481 + AT_rich Low_complexity Low_complexity 1 27 0 530 193 128 9 chr13 47182417 47182526 -72562372 - FLAM_C SINE Alu -11 122 1 243 223 121 79 chr13 47182568 47182710 -72562188 - L1ME4a LINE L1 -23 6098 5943 2178 104 0 0 chr13 47182710 47182997 -72561901 + AluSq SINE Alu 1 287 -26 243 223 121 79 chr13 47182997 47183069 -72561829 - L1ME4a LINE L1 -178 5943 5875 200 273 18 45 chr13 47183204 47183314 -72561584 + CT-rich Low_complexity Low_complexity 3 109 0 1903 90 124 0 chr13 47183497 47183763 -72561135 - AluSp SINE Alu -14 299 1 2961 132 104 20 chr13 47185537 47186075 -72558823 + LTR59 LTR ERV1 9 591 -6 2161 95 28 0 chr13 47187764 47188047 -72556851 + AluSg SINE Alu 1 291 -19 1087 273 146 57 chr13 47188216 47189061 -72555837 + L1MC4a LINE L1 5255 6174 -1634 2073 129 3 3 chr13 47189061 47189379 -72555519 - AluSx SINE Alu 0 318 1 242 163 0 0 chr13 47189465 47189508 -72555390 + L1MB5 LINE L1 6131 6173 -1 424 282 166 11 chr13 47189602 47189783 -72555115 + MER63A DNA MER1_type 2 210 0 299 291 55 24 chr13 47190168 47190295 -72554603 + MLT1L LTR MaLR 150 280 -335 1733 157 44 29 chr13 47190565 47190909 -72553989 + MLT2C1 LTR ERVL 1 349 -48 227 175 18 18 chr13 47190942 47190999 -72553899 + MLT2C1 LTR ERVL 464 520 0 376 231 67 0 chr13 47191112 47191216 -72553682 - L1ME4a LINE L1 -476 5645 5535 230 121 0 0 chr13 47191249 47191282 -72553616 + L2 LINE L2 3264 3296 -17 306 305 30 23 chr13 47191470 47191601 -72553297 + MIR SINE MIR 21 152 -110 408 335 132 16 chr13 47192798 47193117 -72551781 + L1MEc LINE L1 29 384 -6012 409 89 36 0 chr13 47193335 47193391 -72551507 + FAM SINE Alu 105 162 -17 381 194 103 101 chr13 47193395 47193644 -72551254 + L1MEc LINE L1 2094 2300 -3915 2062 138 14 0 chr13 47193644 47193941 -72550957 + AluSx SINE Alu 1 301 -11 381 194 103 101 chr13 47193941 47194004 -72550894 + L1MEc LINE L1 2300 2361 -3854 1931 149 0 35 chr13 47194007 47194323 -72550575 + AluSx SINE Alu 1 305 -7 982 144 0 40 chr13 47194323 47194496 -72550402 + AluJo/FRAM SINE Alu 134 299 -13 2761 214 39 64 chr13 47194514 47195230 -72549668 + L1MEc LINE L1 2364 3053 -3162 2011 127 7 3 chr13 47195230 47195522 -72549376 + AluSq SINE Alu 1 293 -20 2761 214 39 64 chr13 47195522 47195733 -72549165 + L1MEc LINE L1 3053 3268 -2947 2108 146 0 3 chr13 47195743 47196045 -72548853 + AluSx SINE Alu 1 301 -11 2374 203 3 52 chr13 47196074 47196431 -72548467 - L1M4 LINE L1 -1941 4205 3832 2201 89 34 0 chr13 47196431 47196724 -72548174 - AluSq SINE Alu -10 303 1 2374 203 3 52 chr13 47196724 47196901 -72547997 - L1M4 LINE L1 -2314 3832 3699 892 152 0 36 chr13 47196901 47197039 -72547859 - FLAM_A SINE Alu 0 133 1 2374 203 3 52 chr13 47197039 47197084 -72547814 - L1M4 LINE L1 -2447 3699 3653 1611 142 0 15 chr13 47197857 47198118 -72546780 - AluSg SINE Alu -53 257 1 2273 142 9 0 chr13 47199415 47199747 -72545151 + MER2 DNA MER2_type 1 335 -10 210 71 0 0 chr13 47200119 47200147 -72544751 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 186 286 32 0 chr13 47200395 47200458 -72544440 - L3 LINE CR1 -882 695 631 183 80 0 0 chr13 47200584 47200609 -72544289 + (CA)n Simple_repeat Simple_repeat 1 25 0 2199 106 3 16 chr13 47201082 47201394 -72543504 + AluSx SINE Alu 1 308 -4 5197 135 84 42 chr13 47201873 47202845 -72542053 - L1MC1 LINE L1 -2 6331 5319 294 172 0 0 chr13 47202846 47202904 -72541994 + Charlie5 DNA MER1_type 50 107 -2505 183 80 0 0 chr13 47202906 47202931 -72541967 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 516 193 0 12 chr13 47202935 47203018 -72541880 - FRAM/FAM SINE Alu -97 79 1 1080 183 0 24 chr13 47203027 47203196 -72541702 - FAM SINE Alu -10 165 1 742 169 7 0 chr13 47203202 47203344 -72541554 - L1MC1 LINE L1 -819 5327 5185 192 77 0 0 chr13 47203390 47203416 -72541482 + (TC)n Simple_repeat Simple_repeat 2 27 0 2282 89 0 41 chr13 47203432 47203611 -72541287 - AluSp SINE Alu -10 303 141 2378 66 0 35 chr13 47203611 47203930 -72540968 - AluY SINE Alu -3 308 1 2282 89 0 41 chr13 47203930 47204066 -72540832 - AluSp SINE Alu -172 141 1 44 46 0 0 chr13 47204255 47204320 -72540578 + AT_rich Low_complexity Low_complexity 1 65 0 311 297 151 53 chr13 47206746 47207103 -72537795 + L1M2 LINE L1 628 1019 -5830 185 349 47 0 chr13 47209584 47209670 -72535228 - MIR3 SINE MIR -13 195 106 360 0 0 0 chr13 47209790 47209830 -72535068 + (A)n Simple_repeat Simple_repeat 1 40 0 1412 175 17 34 chr13 47209831 47210128 -72534770 + AluJo SINE Alu 1 292 -20 414 0 0 0 chr13 47210604 47210650 -72534248 + (CA)n Simple_repeat Simple_repeat 2 47 0 8337 121 24 21 chr13 47210650 47211935 -72532963 - HSMAR2 DNA Mariner -5 1297 9 2018 100 11 0 chr13 47211957 47212227 -72532671 + AluSq SINE Alu 11 283 -30 992 185 82 26 chr13 47213200 47213432 -72531466 + MIR SINE MIR 17 261 -1 186 189 27 0 chr13 47213924 47213961 -72530937 - MIR SINE MIR -76 186 149 311 298 54 32 chr13 47214114 47214283 -72530615 - L1MEd LINE L1 -5053 1066 918 2114 133 3 3 chr13 47214297 47214599 -72530299 - AluSx SINE Alu -10 302 1 2347 99 0 0 chr13 47214601 47214904 -72529994 - AluSx SINE Alu -9 303 1 245 243 81 58 chr13 47214967 47215140 -72529758 - HAL1 LINE L1 -1498 1009 833 982 200 12 86 chr13 47215248 47215503 -72529395 - MER106A DNA MER1_type 0 236 1 614 129 129 29 chr13 47215717 47215857 -72529041 - L1MC1 LINE L1 0 6333 6180 969 156 58 82 chr13 47216322 47216579 -72528319 - L1MB8 LINE L1 0 6178 5928 2107 144 23 121 chr13 47216583 47216808 -72528090 - L1MA6 LINE L1 -239 6061 5914 1579 159 87 14 chr13 47216808 47217127 -72527771 - AluJo SINE Alu 0 312 1 2107 144 23 121 chr13 47217127 47217422 -72527476 - L1MA6 LINE L1 -386 5914 5592 1510 256 139 19 chr13 47217967 47218479 -72526419 + MLT1G1 LTR MaLR 1 573 -22 2577 113 21 32 chr13 47218483 47218819 -72526079 + THE1C LTR MaLR 1 334 -41 2068 142 7 0 chr13 47218819 47219122 -72525776 - AluSx SINE Alu -7 305 1 2577 113 21 32 chr13 47219122 47219164 -72525734 + THE1C LTR MaLR 334 375 0 9052 96 44 132 chr13 47219164 47220896 -72524002 + THE1C-int LTR MaLR 1 1580 0 3069 94 0 0 chr13 47220898 47221271 -72523627 + THE1C LTR MaLR 3 375 0 2197 127 0 0 chr13 47221375 47221667 -72523231 - AluSg SINE Alu -18 292 1 592 276 133 5 chr13 47221764 47221960 -72522938 + MIR SINE MIR 29 249 -13 285 324 39 16 chr13 47222078 47222260 -72522638 - MLT1L LTR MaLR 0 615 430 1742 163 3 16 chr13 47222497 47222804 -72522094 + AluJb SINE Alu 1 303 -9 189 250 181 28 chr13 47223237 47223309 -72521589 + L2 LINE L2 3219 3301 -12 1040 216 80 50 chr13 47223397 47223587 -72521311 + MLT1D LTR MaLR 1 184 -321 285 29 0 0 chr13 47223587 47223621 -72521277 + (TC)n Simple_repeat Simple_repeat 1 34 0 237 33 0 0 chr13 47223620 47223650 -72521248 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 1040 216 80 50 chr13 47223621 47223820 -72521078 + MLT1D LTR MaLR 184 372 -133 605 142 0 25 chr13 47223899 47224019 -72520879 + MLT1D LTR MaLR 389 505 0 183 42 0 0 chr13 47224803 47224827 -72520071 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2077 117 17 13 chr13 47225767 47226067 -72518831 + AluSx SINE Alu 1 301 -11 209 94 19 75 chr13 47226916 47226969 -72517929 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 1902 135 15 4 chr13 47227307 47227581 -72517317 + AluSx SINE Alu 29 305 -7 929 241 95 59 chr13 47227666 47227799 -72517099 + LTR33 LTR ERVL 36 163 -358 2303 111 0 0 chr13 47227799 47228106 -72516792 - AluSg SINE Alu -2 308 2 929 241 95 59 chr13 47228106 47228433 -72516465 + LTR33 LTR ERVL 163 513 -8 257 257 14 14 chr13 47228578 47228648 -72516250 + MLT1L LTR MaLR 132 201 -414 210 143 29 0 chr13 47228996 47229031 -72515867 + (CA)n Simple_repeat Simple_repeat 2 37 0 452 328 90 0 chr13 47229044 47229367 -72515531 - L1MC4a LINE L1 -1883 5925 5574 33805 92 9 27 chr13 47229388 47235526 -72509372 + L1PA6 LINE L1 64 6088 -66 3551 135 70 38 chr13 47235526 47236404 -72508494 - MER11A LTR ERVK 0 1266 223 2591 58 0 6 chr13 47236404 47236716 -72508182 + AluY SINE Alu 1 310 -1 3551 135 70 38 chr13 47236716 47236800 -72508098 - MER11A LTR ERVK -1043 223 143 1368 88 5 5 chr13 47236976 47237168 -72507730 - AluY SINE Alu -119 192 1 2222 95 0 10 chr13 47237699 47237994 -72506904 - AluSc SINE Alu -16 293 2 704 306 128 30 chr13 47238073 47238475 -72506423 + L2 LINE L2 2245 2606 -708 2448 80 3 0 chr13 47238475 47238775 -72506123 - AluSp SINE Alu -12 301 1 1514 180 39 7 chr13 47238779 47239063 -72505835 - AluJb SINE Alu -19 293 1 704 306 128 30 chr13 47239063 47239256 -72505642 + L2 LINE L2 2608 2904 -410 192 154 0 26 chr13 47239475 47239514 -72505384 + MIR SINE MIR 218 255 -7 682 277 40 68 chr13 47239586 47239777 -72505121 + MIR SINE MIR 21 206 -56 2594 3 0 0 chr13 47239777 47240093 -72504805 + AluYa5 SINE Alu 1 316 0 682 277 40 68 chr13 47240093 47240149 -72504749 + MIR SINE MIR 206 262 0 2142 66 14 3 chr13 47240450 47240738 -72504160 - AluY SINE Alu -20 291 1 193 156 172 47 chr13 47241069 47241133 -72503765 - L2 LINE L2 -92 3221 3150 453 333 98 14 chr13 47241218 47241494 -72503404 - L2 LINE L2 -354 2960 2662 1960 146 3 7 chr13 47241494 47241782 -72503116 + AluJb SINE Alu 1 287 -25 28 0 0 0 chr13 47241783 47241811 -72503087 + AT_rich Low_complexity Low_complexity 1 28 0 188 357 12 24 chr13 47241811 47241895 -72503003 - L2 LINE L2 -640 2674 2592 688 278 75 82 chr13 47242443 47242907 -72501991 + L2 LINE L2 2144 2604 -710 183 368 45 45 chr13 47243336 47243559 -72501339 - L2 LINE L2 -485 2829 2607 21 36 0 0 chr13 47243905 47243933 -72500965 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr13 47244446 47244468 -72500430 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1908 137 7 3 chr13 47244470 47244754 -72500144 - AluSg SINE Alu -25 285 1 246 279 128 0 chr13 47245659 47245745 -72499153 + MER5A DNA MER1_type 6 102 -87 2443 62 3 31 chr13 47247455 47247775 -72497123 + AluY SINE Alu 1 311 0 1519 138 20 126 chr13 47247858 47248214 -72496684 + AluYb8 SINE Alu 1 318 0 2142 135 16 11 chr13 47248249 47248620 -72496278 + L1MB3 LINE L1 5804 6176 -7 1943 149 3 0 chr13 47248851 47249176 -72495722 - AluJb SINE Alu 0 326 1 271 301 264 0 chr13 47249199 47249392 -72495506 - MIR SINE MIR -5 257 14 327 258 32 11 chr13 47249476 47249569 -72495329 - L2 LINE L2 -1 3312 3218 2303 98 3 3 chr13 47251634 47251941 -72492957 - AluSp SINE Alu -6 307 1 2387 125 35 5 chr13 47251965 47252341 -72492557 + MLT1B LTR MaLR 1 387 -3 362 298 32 32 chr13 47252351 47252475 -72492423 + L2 LINE L2 3145 3268 -4 703 198 0 0 chr13 47252861 47252977 -72491921 + FLAM_C SINE Alu 1 116 -27 198 0 0 0 chr13 47252980 47253002 -72491896 + (CA)n Simple_repeat Simple_repeat 2 23 0 578 305 63 11 chr13 47253004 47253355 -72491543 - L1ME LINE L1 -357 5764 5396 494 159 34 35 chr13 47254038 47254163 -72490735 - L1ME3 LINE L1 -176 5986 5850 358 182 13 0 chr13 47254163 47254240 -72490658 - L1MB4 LINE L1 -1 6179 6102 2841 171 34 60 chr13 47254327 47254551 -72490347 - L1MB3 LINE L1 -107 6076 5848 1854 159 13 7 chr13 47254551 47254853 -72490045 - AluJb SINE Alu -8 304 1 2841 171 34 60 chr13 47254853 47255299 -72489599 - L1MB3 LINE L1 -335 5848 5423 2039 159 0 0 chr13 47255304 47255600 -72489298 - AluSx SINE Alu -16 296 1 292 372 67 9 chr13 47255633 47255856 -72489042 + L2 LINE L2 2036 2271 -1043 2266 82 31 0 chr13 47256092 47256384 -72488514 - AluSc SINE Alu -8 301 1 705 214 7 7 chr13 47256384 47256529 -72488369 - L1MC1 LINE L1 -8 6325 6181 1283 187 99 29 chr13 47256529 47256681 -72488217 - LTR54 LTR ERV1 -4 399 259 2234 129 0 0 chr13 47256681 47256990 -72487908 + AluSg1 SINE Alu 1 309 0 1283 187 99 29 chr13 47256990 47257287 -72487611 - LTR54 LTR ERV1 -144 259 1 2833 129 42 40 chr13 47257288 47257487 -72487411 - L1MC1 LINE L1 -146 6187 5990 2268 119 0 0 chr13 47257487 47257790 -72487108 - AluSg SINE Alu -7 303 1 1576 228 0 10 chr13 47257798 47258105 -72486793 - AluJo SINE Alu -8 304 1 2833 129 42 40 chr13 47258105 47258468 -72486430 - L1MC1 LINE L1 -349 5984 5615 1074 176 19 147 chr13 47258471 47258549 -72486349 + MLT1A1 LTR MaLR 3 89 -276 725 240 0 0 chr13 47258549 47258678 -72486220 - FLAM_A SINE Alu -3 130 2 1074 176 19 147 chr13 47258678 47259015 -72485883 + MLT1A1 LTR MaLR 89 365 0 617 160 88 0 chr13 47259015 47259140 -72485758 - L1MC1 LINE L1 -726 5618 5483 1633 135 15 8 chr13 47259185 47259444 -72485454 + AluSx SINE Alu 1 261 -51 421 62 15 0 chr13 47261272 47261337 -72483561 - MER41B LTR ERV1 -89 546 481 22 0 0 0 chr13 47261429 47261451 -72483447 + AT_rich Low_complexity Low_complexity 1 22 0 1945 152 17 0 chr13 47261851 47262141 -72482757 + AluSx SINE Alu 2 296 -16 247 245 0 0 chr13 47262168 47262217 -72482681 - Charlie8 DNA MER1_type -2244 173 125 433 272 24 8 chr13 47262305 47262430 -72482468 + MER58 DNA MER1_type 4 130 -2290 473 235 39 0 chr13 47262533 47262635 -72482263 + MIR SINE MIR 51 156 -106 1712 123 0 4 chr13 47262699 47262942 -72481956 - AluSg SINE Alu -10 300 59 580 245 87 15 chr13 47263268 47263464 -72481434 - L1ME2 LINE L1 -6 6158 5949 471 305 189 0 chr13 47263598 47263762 -72481136 - MER91A DNA MER1_type 0 196 2 2151 98 4 0 chr13 47263813 47264090 -72480808 - AluSx SINE Alu -34 278 1 510 155 0 10 chr13 47264127 47264224 -72480674 - Charlie1b DNA MER1_type 0 523 428 * 792 174 68 133 chr13 47264217 47264539 -72480359 - Charlie1b DNA MER1_type -217 306 6 528 221 81 97 chr13 47264544 47264978 -72479920 - HAL1 LINE L1 -170 2337 1911 626 193 167 10 chr13 47265143 47265335 -72479563 - HAL1 LINE L1 -837 1670 1449 345 209 47 70 chr13 47265389 47265518 -72479380 - HAL1 LINE L1 -2339 168 43 1830 147 50 7 chr13 47266125 47266404 -72478494 + AluJb SINE Alu 1 291 -21 36 23 0 0 chr13 47266404 47266447 -72478451 + AT_rich Low_complexity Low_complexity 1 43 0 289 296 61 0 chr13 47266591 47266689 -72478209 + MIR3 SINE MIR 77 180 -28 2337 88 7 0 chr13 47267621 47267915 -72476983 + AluSx SINE Alu 1 296 -16 2365 83 0 7 chr13 47268404 47268705 -72476193 - AluY SINE Alu -12 299 1 2260 101 3 0 chr13 47269456 47269754 -72475144 - AluSc SINE Alu -10 299 1 30 27 0 0 chr13 47269971 47270008 -72474890 + AT_rich Low_complexity Low_complexity 1 37 0 842 145 0 35 chr13 47270919 47271064 -72473834 - FLAM_C SINE Alu -3 140 1 460 247 51 66 chr13 47271108 47271239 -72473659 - L1ME2 LINE L1 -461 5701 5606 1398 103 75 0 chr13 47271239 47271453 -72473445 + MER30 DNA MER1_type 1 230 0 460 247 51 66 chr13 47271453 47271584 -72473314 - L1ME2 LINE L1 -556 5606 5474 1548 214 79 18 chr13 47271630 47272087 -72472811 - L1ME1 LINE L1 -7 6159 5675 537 278 104 33 chr13 47272090 47272511 -72472387 - L1ME1 LINE L1 -1819 4327 3877 238 318 47 47 chr13 47272699 47272806 -72472092 + L2 LINE L2 3150 3256 -16 2433 65 3 0 chr13 47272966 47273260 -72471638 + AluY SINE Alu 1 295 -16 253 289 70 23 chr13 47273269 47273397 -72471501 - L2 LINE L2 -1 3312 3179 270 376 133 26 chr13 47273924 47274150 -72470748 + L2 LINE L2 2998 3247 -25 1761 113 71 37 chr13 47274938 47275264 -72469634 + MER1B DNA MER1_type 3 339 0 2298 104 0 0 chr13 47277506 47277804 -72467094 - AluSq SINE Alu -15 298 1 337 83 0 33 chr13 47277840 47277900 -72466998 + (TG)n Simple_repeat Simple_repeat 1 58 0 1886 151 0 33 chr13 47277931 47278230 -72466668 - AluJb SINE Alu -23 289 1 329 248 88 93 chr13 47279497 47279591 -72465307 - L1MC4 LINE L1 -195 7847 7754 1781 136 51 30 chr13 47279591 47279923 -72464975 - MER44D DNA MER2_type 0 609 1 329 248 88 93 chr13 47279923 47280054 -72464844 - L1MC4 LINE L1 -288 7754 7623 603 161 93 43 chr13 47280291 47280453 -72464445 - MER105 DNA DNA -1 203 34 266 179 0 30 chr13 47281114 47281181 -72463717 - MER58A DNA MER1_type 0 112 48 609 160 9 0 chr13 47281181 47281287 -72463611 + FLAM_C SINE Alu 1 107 -36 230 275 0 0 chr13 47281489 47281558 -72463340 - AluSq SINE Alu -90 213 145 964 65 14 7 chr13 47282481 47282619 -72462279 - L1PA16 LINE L1 0 6166 6028 186 43 0 0 chr13 47282619 47282642 -72462256 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 4768 68 5 2 chr13 47282642 47283261 -72461637 - L1PA7 LINE L1 -13 6141 5521 1076 119 110 32 chr13 47283261 47283289 -72461609 - L1PA16 LINE L1 -127 6039 6015 186 43 0 0 chr13 47283289 47283312 -72461586 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 1076 119 110 32 chr13 47283312 47283502 -72461396 - L1PA16 LINE L1 -151 6015 5804 357 241 28 19 chr13 47283560 47283668 -72461230 - L1ME1 LINE L1 -23 6143 6035 21 57 0 0 chr13 47283864 47283899 -72460999 + AT_rich Low_complexity Low_complexity 1 35 0 309 299 24 47 chr13 47285401 47285528 -72459370 - L2 LINE L2 -18 3295 3172 1871 162 61 6 chr13 47286357 47286703 -72458195 - MLT1A1 LTR MaLR 0 365 1 283 298 119 62 chr13 47288206 47288605 -72456293 + L2 LINE L2 2624 3053 -219 24 0 0 0 chr13 47288671 47288695 -72456203 + AT_rich Low_complexity Low_complexity 1 24 0 234 273 65 26 chr13 47288724 47288801 -72456097 + L2 LINE L2 3193 3272 0 194 289 0 0 chr13 47289128 47289173 -72455725 + L2 LINE L2 2989 3033 -239 361 219 151 34 chr13 47289741 47289887 -72455011 + MER20B DNA MER1_type 1 163 -620 21 0 0 0 chr13 47290486 47290507 -72454391 + AT_rich Low_complexity Low_complexity 1 21 0 1096 212 45 101 chr13 47290767 47291145 -72453753 - L1ME2 LINE L1 -17 6147 5804 1795 159 0 25 chr13 47291145 47291459 -72453439 - AluJb SINE Alu -6 306 1 1096 212 45 101 chr13 47291459 47291595 -72453303 - L1ME2 LINE L1 -360 5804 5662 2306 249 76 18 chr13 47291875 47292638 -72452260 + L2 LINE L2 2291 3094 -219 877 220 35 20 chr13 47293101 47293301 -72451597 + L2 LINE L2 3106 3308 -5 35 33 0 17 chr13 47293831 47293857 -72451041 + AT_rich Low_complexity Low_complexity 1 26 -33 2346 89 7 0 chr13 47293857 47294150 -72450748 - AluSg SINE Alu -15 295 1 35 33 0 17 chr13 47294150 47294183 -72450715 + AT_rich Low_complexity Low_complexity 26 59 0 724 175 0 44 chr13 47294184 47294321 -72450577 - FLAM_C SINE Alu -12 131 1 8850 137 48 22 chr13 47294576 47296535 -72448363 - Ricksha DNA DNA -7 3239 1171 416 289 108 42 chr13 47296638 47296869 -72448029 + L2 LINE L2 1873 2120 -1194 631 208 0 16 chr13 47296869 47296994 -72447904 + MER5C DNA MER1_type 2 124 -200 27 62 0 0 chr13 47297563 47297611 -72447287 + AT_rich Low_complexity Low_complexity 1 48 0 374 226 161 50 chr13 47298193 47298392 -72446506 + MER5C DNA MER1_type 104 324 0 791 241 18 0 chr13 47298772 47298942 -72445956 - MER45A DNA AcHobo 0 178 6 328 336 29 0 chr13 47298946 47299050 -72445848 + L2 LINE L2 3163 3269 -3 815 124 16 0 chr13 47299050 47299179 -72445719 - MLT1B LTR MaLR -259 131 1 2050 155 0 0 chr13 47300150 47300447 -72444451 + AluSx SINE Alu 1 297 -15 928 268 73 42 chr13 47300505 47300987 -72443911 - MLT1J LTR MaLR -10 501 5 253 240 250 20 chr13 47301090 47301286 -72443612 + MLT1F LTR MaLR 124 364 -185 255 183 33 0 chr13 47301301 47301361 -72443537 + MLT1F LTR MaLR 481 542 0 641 289 19 33 chr13 47302747 47302958 -72441940 + MER63A DNA MER1_type 3 210 0 1623 324 78 13 chr13 47303011 47303792 -72441106 + HERVL LTR ERVL 1830 2661 -2993 223 157 229 0 chr13 47303833 47303903 -72440995 - MER5C DNA MER1_type 0 324 239 471 280 8 0 chr13 47304033 47304151 -72440747 - MER5C DNA MER1_type -200 124 6 1027 335 40 2 chr13 47304183 47304655 -72440243 + HERVL LTR ERVL 2806 3295 -2359 1193 246 43 0 chr13 47304665 47304941 -72439957 + MLT1E LTR MaLR 277 564 -29 2086 201 50 48 chr13 47304979 47305597 -72439301 + L1ME2 LINE L1 5546 6164 0 511 286 47 6 chr13 47307044 47307215 -72437683 - MIR SINE MIR -42 220 43 2207 106 0 0 chr13 47307444 47307748 -72437150 + AluSx SINE Alu 1 304 0 333 0 0 0 chr13 47308745 47308782 -72436116 + (TG)n Simple_repeat Simple_repeat 2 38 0 745 318 208 10 chr13 47309037 47309590 -72435308 - L2 LINE L2 0 3272 2613 1216 247 3 0 chr13 47310698 47310994 -72433904 - AluSp SINE Alu -2 301 5 1971 188 84 16 chr13 47311431 47311921 -72432977 - Charlie1b DNA MER1_type 0 523 1 974 93 93 0 chr13 47312845 47312995 -72431903 + MER5A DNA MER1_type 1 164 -25 238 261 23 11 chr13 47313002 47313090 -72431808 + L1M4 LINE L1 4494 4582 -1564 2053 128 16 57 chr13 47313114 47313480 -72431418 + L1MB2 LINE L1 5766 6115 -56 2126 108 0 4 chr13 47313480 47313789 -72431109 + AluSc SINE Alu 1 308 0 2053 128 16 57 chr13 47313789 47313844 -72431054 + L1MB2 LINE L1 6115 6171 0 28 0 0 0 chr13 47313844 47313872 -72431026 + AT_rich Low_complexity Low_complexity 1 28 0 854 127 30 22 chr13 47313874 47314008 -72430890 + AluJb SINE Alu 1 135 -177 26 30 0 0 chr13 47314012 47314045 -72430853 + AT_rich Low_complexity Low_complexity 1 33 0 276 222 0 0 chr13 47314162 47314225 -72430673 + L1MC5 LINE L1 7809 7871 -90 211 296 0 0 chr13 47314235 47314306 -72430592 + (CA)n Simple_repeat Simple_repeat 2 72 0 951 154 0 0 chr13 47314313 47314475 -72430423 + L1MB3 LINE L1 5851 6012 -171 297 0 0 0 chr13 47314492 47314525 -72430373 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 414 0 0 0 chr13 47314524 47314570 -72430328 + (GA)n Simple_repeat Simple_repeat 2 47 0 679 236 68 19 chr13 47314763 47314924 -72429974 - AluJo SINE Alu -143 169 1 308 364 23 34 chr13 47315996 47316172 -72428726 + MIR3 SINE MIR 32 205 -3 291 298 167 0 chr13 47316638 47316752 -72428146 + MIR SINE MIR 112 244 -18 462 248 40 0 chr13 47316916 47317065 -72427833 + L1ME4a LINE L1 5962 6116 -5 1077 263 45 53 chr13 47317225 47317825 -72427073 + L1MC5 LINE L1 7337 7931 -30 3158 142 99 14 chr13 47317961 47318519 -72426379 - MER6A DNA MER2_type 0 605 1 420 256 38 30 chr13 47319297 47319430 -72425468 - AluJb SINE Alu -177 135 2 2113 111 0 4 chr13 47319522 47319825 -72425073 - AluSc SINE Alu 0 302 1 1871 140 22 19 chr13 47319826 47320191 -72424707 - L1MB2 LINE L1 -40 6131 5766 238 261 23 11 chr13 47320215 47320303 -72424595 - L1M4 LINE L1 -1564 4582 4494 974 93 93 0 chr13 47320310 47320460 -72424438 - MER5A DNA MER1_type -25 164 1 606 51 0 0 chr13 47321368 47321446 -72423452 + (CA)n Simple_repeat Simple_repeat 1 78 0 11530 103 36 30 chr13 47324273 47327126 -72417772 + L1P3 LINE L1 66 2963 -3498 2157 124 0 7 chr13 47327338 47327644 -72417254 - AluSc SINE Alu -5 304 1 265 190 35 0 chr13 47328925 47328983 -72415915 - MER5B DNA MER1_type 0 178 119 1825 149 24 17 chr13 47328993 47329288 -72415610 + AluSx SINE Alu 5 301 -11 2594 41 0 25 chr13 47329288 47329604 -72415294 + AluY SINE Alu 1 308 -3 1356 213 75 57 chr13 47330219 47330442 -72414456 - MSTB2 LTR MaLR -7 450 233 2081 112 3 7 chr13 47330442 47330728 -72414170 - AluSg SINE Alu -25 285 1 1356 213 75 57 chr13 47330728 47330946 -72413952 - MSTB2 LTR MaLR -224 233 1 6775 129 29 6 chr13 47330957 47332100 -72412798 + L1MC1 LINE L1 5172 6333 0 314 257 81 14 chr13 47333043 47333117 -72411781 - L2 LINE L2 -23 3249 3171 2757 287 157 5 chr13 47335381 47336591 -72408307 + L2 LINE L2 1243 2646 -668 315 0 0 0 chr13 47336591 47336626 -72408272 + (CA)n Simple_repeat Simple_repeat 1 35 0 2757 287 157 5 chr13 47336626 47336649 -72408249 + L2 LINE L2 2646 2664 -650 426 96 24 12 chr13 47336649 47336655 -72408243 + (TC)n Simple_repeat Simple_repeat 1 5 -79 243 0 0 0 chr13 47336655 47336682 -72408216 + (CA)n Simple_repeat Simple_repeat 1 27 0 426 96 24 12 chr13 47336682 47336758 -72408140 + (TC)n Simple_repeat Simple_repeat 5 84 0 1000 245 64 50 chr13 47336892 47337328 -72407570 + L2 LINE L2 2872 3313 0 600 279 80 35 chr13 47337356 47337582 -72407316 + MIR SINE MIR 1 236 -26 535 259 25 43 chr13 47337819 47337981 -72406917 - L2 LINE L2 -3 3310 3152 242 191 0 16 chr13 47338366 47338429 -72406469 + L1ME4a LINE L1 6059 6120 -1 495 155 155 27 chr13 47338562 47338710 -72406188 - L1ME4a LINE L1 0 6121 5955 436 281 179 23 chr13 47338788 47339223 -72405675 - L1ME4a LINE L1 -301 5820 5318 25 0 0 0 chr13 47339433 47339458 -72405440 + AT_rich Low_complexity Low_complexity 1 25 0 181 239 75 0 chr13 47339975 47340042 -72404856 + L2 LINE L2 1610 1681 -1633 316 56 56 0 chr13 47340057 47340111 -72404787 + A-rich Low_complexity Low_complexity 1 57 0 186 43 0 0 chr13 47340121 47340144 -72404754 + (GGGGA)n Simple_repeat Simple_repeat 2 24 0 913 78 23 0 chr13 47340244 47340372 -72404526 + L1MA5 LINE L1 6168 6298 -2 513 205 71 104 chr13 47340374 47340675 -72404223 + L1M4 LINE L1 3772 4067 -2079 2249 80 42 0 chr13 47340898 47341186 -72403712 + AluY SINE Alu 1 300 -11 1704 238 23 10 chr13 47341247 47341633 -72403265 - MLT1J LTR MaLR -120 391 1 7106 175 162 30 chr13 47341711 47343239 -72401659 - MER52A LTR ERV1 0 1755 26 1943 141 0 33 chr13 47344070 47344374 -72400524 - AluJb SINE Alu -18 294 1 226 312 192 40 chr13 47344516 47345010 -72399888 + L2 LINE L2 2407 2975 -339 204 135 0 0 chr13 47345557 47345594 -72399304 + (T)n Simple_repeat Simple_repeat 1 37 0 232 210 0 160 chr13 47345622 47345722 -72399176 + MIR SINE MIR 48 131 -131 2156 98 39 0 chr13 47348937 47349222 -72395676 - AluSx SINE Alu -16 296 1 1850 166 20 0 chr13 47349573 47349869 -72395029 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr13 47350375 47350397 -72394501 + AT_rich Low_complexity Low_complexity 1 22 0 257 118 132 15 chr13 47351594 47351662 -72393236 - L1ME4a LINE L1 0 6121 6046 454 207 164 92 chr13 47351682 47352108 -72392790 - L1ME4a LINE L1 -148 5973 5517 210 277 0 0 chr13 47353731 47353778 -72391120 + MIR SINE MIR 98 144 -64 355 261 59 26 chr13 47353802 47353955 -72390943 - L1ME3A LINE L1 0 6170 6013 368 169 67 0 chr13 47353972 47354061 -72390837 - L1ME3A LINE L1 -211 5951 5857 262 293 8 49 chr13 47354595 47354718 -72390180 - MLT1K LTR MaLR -6 582 465 202 177 16 16 chr13 47354733 47354795 -72390103 + CT-rich Low_complexity Low_complexity 1 62 0 459 267 79 92 chr13 47354795 47355087 -72389811 - MLT1K LTR MaLR -158 430 143 1216 206 111 49 chr13 47355111 47355455 -72389443 - MLT1A1 LTR MaLR 0 365 1 457 278 94 17 chr13 47355851 47356031 -72388867 - L1ME3A LINE L1 -2159 5649 5456 1316 158 48 90 chr13 47356689 47356999 -72387899 - AluJo SINE Alu -15 297 1 2005 145 7 0 chr13 47357003 47357299 -72387599 - AluSx SINE Alu -12 300 3 510 241 194 24 chr13 47357703 47357900 -72386998 + MIR SINE MIR 36 261 -1 185 222 0 67 chr13 47357910 47357955 -72386943 + MIR SINE MIR 215 256 -6 467 264 8 8 chr13 47361464 47361585 -72383313 - LTR28 LTR ERV1 0 1020 900 1609 216 84 121 chr13 47361625 47362445 -72382453 - LTR28 LTR ERV1 -39 981 1 1342 230 37 74 chr13 47362577 47363034 -72381864 + L1MC5 LINE L1 6928 7367 -594 726 99 0 187 chr13 47363061 47363133 -72381765 - MER57A LTR ERV1 -264 139 116 2901 83 0 0 chr13 47363133 47363495 -72381403 - L1PA7 LINE L1 0 6154 5793 726 99 0 187 chr13 47363495 47363593 -72381305 - MER57A LTR ERV1 -287 116 1 1669 91 5 0 chr13 47363593 47363813 -72381085 - MER4B LTR ERV1 -389 221 1 321 352 6 19 chr13 47363932 47364094 -72380804 - L1M4 LINE L1 -2258 3888 3729 199 288 14 27 chr13 47364185 47364258 -72380640 - MIR3 SINE MIR -52 156 85 1467 188 40 24 chr13 47364303 47364483 -72380415 - AluJo SINE Alu -9 303 115 477 0 0 0 chr13 47364483 47364536 -72380362 + (TG)n Simple_repeat Simple_repeat 2 54 0 1467 188 40 24 chr13 47364536 47364653 -72380245 - AluJo SINE Alu -197 115 1 190 321 18 73 chr13 47364673 47364838 -72380060 + L2 LINE L2 2509 2664 -650 411 312 96 0 chr13 47364982 47365107 -72379791 + MIR3 SINE MIR 10 146 -62 3603 121 61 113 chr13 47365138 47365905 -72378993 - MER4E LTR ERV1 0 779 53 1390 143 0 0 chr13 47365905 47366114 -72378784 + AluSg/x SINE Alu 92 300 -10 2441 159 72 13 chr13 47366147 47366606 -72378292 - L1MA8 LINE L1 0 6291 5806 2979 142 43 2 chr13 47366607 47367492 -72377406 + L1M2 LINE L1 4853 5769 -522 1412 116 0 0 chr13 47367654 47367844 -72377054 - AluSq SINE Alu -123 190 1 208 290 108 32 chr13 47368117 47368210 -72376688 - MIR SINE MIR -78 130 31 2028 267 79 38 chr13 47368632 47368986 -72375912 - L2 LINE L2 -1106 2208 1870 2044 163 0 0 chr13 47368986 47369286 -72375612 + AluSx SINE Alu 1 300 -12 2028 267 79 38 chr13 47369286 47369668 -72375230 - L2 LINE L2 -1444 1870 1442 370 258 225 0 chr13 47370090 47370210 -72374688 + MIR SINE MIR 102 248 -14 249 261 34 0 chr13 47370286 47370374 -72374524 + L1MD3 LINE L1 7881 7971 -24 199 240 100 0 chr13 47370620 47370670 -72374228 - L2 LINE L2 -2918 396 342 432 308 125 44 chr13 47372887 47373208 -72371690 + L2 LINE L2 2859 3205 -108 651 249 103 28 chr13 47373291 47373544 -72371354 - L2 LINE L2 0 3313 3042 1541 159 26 55 chr13 47374342 47374650 -72370248 + AluJb SINE Alu 1 299 -13 216 139 116 0 chr13 47376431 47376474 -72368424 + L2 LINE L2 3262 3309 -4 476 130 0 0 chr13 47376866 47376935 -72367963 + (GGGGA)n Simple_repeat Simple_repeat 3 71 0 989 285 133 21 chr13 47376954 47377427 -72367471 + L2 LINE L2 1728 2253 -1061 823 231 57 44 chr13 47378043 47378500 -72366398 + MER115 DNA AcHobo 140 691 -2 547 296 110 19 chr13 47378507 47378520 -72366378 + L2 LINE L2 2289 2299 -1015 2487 64 3 0 chr13 47378520 47378815 -72366083 + AluSp SINE Alu 1 296 -17 547 296 110 19 chr13 47378815 47379109 -72365789 + L2 LINE L2 2299 2624 -690 288 0 0 0 chr13 47379183 47379215 -72365683 + (CA)n Simple_repeat Simple_repeat 2 33 0 243 0 0 0 chr13 47379214 47379241 -72365657 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 1822 174 83 60 chr13 47380172 47380353 -72364545 + MLT1C LTR MaLR 3 178 -289 2320 77 0 3 chr13 47380353 47380639 -72364259 + AluSg SINE Alu 5 289 -21 1822 174 83 60 chr13 47380639 47380893 -72364005 + MLT1C LTR MaLR 178 448 -19 897 253 88 5 chr13 47381025 47381318 -72363580 + L1ME2 LINE L1 5818 6135 -29 4296 35 19 0 chr13 47381498 47381977 -72362921 - LTR2B LTR ERV1 -2 488 1 3809 143 61 53 chr13 47381977 47382744 -72362154 - MER4D LTR ERV1 -130 773 1 247 287 9 52 chr13 47382813 47382928 -72361970 - MIR SINE MIR -56 206 97 22 0 0 0 chr13 47383018 47383040 -72361858 + AT_rich Low_complexity Low_complexity 1 22 0 2431 123 74 42 chr13 47383092 47383524 -72361374 - Tigger2 DNA MER2_type 0 2718 2273 258 169 169 0 chr13 47383514 47383573 -72361325 - Tigger2 DNA MER2_type -2649 69 1 * 2205 145 20 6 chr13 47384543 47384895 -72360003 + MLT1A1 LTR MaLR 1 357 -8 3587 71 0 11 chr13 47384994 47385447 -72359451 + LTR7 LTR ERV1 1 448 -2 187 286 13 13 chr13 47385610 47385687 -72359211 + MIR SINE MIR 36 112 -150 1123 188 68 34 chr13 47385923 47386189 -72358709 - ORSL DNA AcHobo 0 275 1 297 315 0 18 chr13 47386493 47386575 -72358323 + (TA)n Simple_repeat Simple_repeat 2 83 -27 4209 104 7 0 chr13 47386575 47387125 -72357773 + MER41A LTR ERV1 1 554 0 297 315 0 18 chr13 47387125 47387153 -72357745 + (TA)n Simple_repeat Simple_repeat 83 110 0 3414 140 24 34 chr13 47387181 47387772 -72357126 + MER34C LTR ERV1 1 585 0 702 249 64 49 chr13 47387799 47388064 -72356834 - HAL1 LINE L1 -81 2426 2158 497 202 0 0 chr13 47388073 47388157 -72356741 - LTR8 LTR ERV1 0 691 608 5059 147 63 1 chr13 47388282 47389059 -72355839 + LTR1B LTR ERV1 2 826 0 1946 199 82 23 chr13 47389108 47389706 -72355192 + MER39 LTR ERV1 1 707 0 651 183 17 0 chr13 47390198 47390318 -72354580 - L2 LINE L2 0 3313 3192 198 265 73 15 chr13 47390790 47390858 -72354040 - L2 LINE L2 -4 3309 3238 969 133 0 0 chr13 47391411 47391546 -72353352 - AluJo/FRAM SINE Alu -11 301 167 602 192 0 0 chr13 47391549 47391648 -72353250 - AluJ/FLAM SINE Alu -212 100 2 582 258 113 20 chr13 47391877 47392125 -72352773 - L2 LINE L2 0 3313 3043 1093 123 0 109 chr13 47392327 47392538 -72352360 + MER5A DNA MER1_type 1 188 -1 900 128 17 0 chr13 47392879 47393028 -72351870 - ERVL LTR ERVL -3289 2216 2043 426 108 0 0 chr13 47393040 47393114 -72351784 + (GA)n Simple_repeat Simple_repeat 2 75 0 1973 182 121 14 chr13 47393119 47393532 -72351366 - MLT2B1 LTR ERVL -60 460 4 1489 191 4 8 chr13 47393535 47393791 -72351107 - ERVL LTR ERVL -3685 2079 1825 1506 164 94 30 chr13 47393995 47394324 -72350574 - L1MB8 LINE L1 -16 6162 5813 21479 150 35 14 chr13 47394334 47394979 -72349919 - L1MA3 LINE L1 0 7724 7094 2276 105 10 0 chr13 47394979 47395274 -72349624 + AluSq SINE Alu 1 298 -15 21479 150 35 14 chr13 47395274 47396697 -72348201 - L1MA3 LINE L1 -630 7094 5703 2071 147 0 0 chr13 47396697 47396997 -72347901 - AluSx SINE Alu -12 300 1 21479 150 35 14 chr13 47396997 47402439 -72342459 - L1MA3 LINE L1 -2021 5703 1 723 81 0 0 chr13 47402435 47402534 -72342364 - L1MB8 LINE L1 -350 5828 5730 * 264 259 19 0 chr13 47402534 47402588 -72342310 - LTR48B LTR ERV1 0 644 590 1025 188 31 0 chr13 47402620 47402812 -72342086 - L1MB8 LINE L1 -618 5566 5369 635 144 33 0 chr13 47402812 47402933 -72341965 + FLAM_A SINE Alu 26 149 0 3171 116 49 61 chr13 47402933 47403520 -72341378 - MER39B LTR ERV1 -68 585 6 1906 197 63 40 chr13 47403524 47404103 -72340795 - L1M4 LINE L1 -452 5732 5133 2276 112 3 0 chr13 47404103 47404407 -72340491 - AluSp SINE Alu -7 306 2 1906 197 63 40 chr13 47404407 47404702 -72340196 - L1M4 LINE L1 -1051 5133 4846 1950 219 27 22 chr13 47405740 47406146 -72338752 - MER77 LTR ERV1 -2 603 196 1243 168 35 10 chr13 47406222 47406425 -72338473 - MER77 LTR ERV1 -397 208 1 823 169 107 23 chr13 47406621 47406798 -72338100 + LTR47A LTR ERVL 261 452 0 372 338 53 32 chr13 47408484 47408920 -72335978 + HERVL18 LTR ERVL 1666 2097 -1321 1551 181 0 15 chr13 47408952 47409160 -72335738 - AluJb SINE Alu -56 256 51 4619 80 14 4 chr13 47409160 47409723 -72335175 + MER61E LTR ERV1 1 569 0 1551 181 0 15 chr13 47409723 47409774 -72335124 - AluJb SINE Alu -261 51 1 2418 109 0 0 chr13 47409779 47410091 -72334807 - AluSx SINE Alu 0 312 1 625 294 21 24 chr13 47410124 47410390 -72334508 + HERVL18 LTR ERVL 2033 2323 -1095 456 194 37 19 chr13 47410413 47410521 -72334377 + MER4C LTR ERV1 5 114 -351 260 231 0 0 chr13 47410605 47410657 -72334241 + MER4A LTR ERV1 136 187 -477 1468 229 36 87 chr13 47410666 47410903 -72333995 + LTR34 LTR ERV1 202 400 -299 1682 188 16 10 chr13 47410903 47411207 -72333691 - AluJo SINE Alu -4 308 3 1468 229 36 87 chr13 47411207 47411489 -72333409 + LTR34 LTR ERV1 400 695 -4 2992 86 11 0 chr13 47411635 47412006 -72332892 - THE1C LTR MaLR 0 375 1 576 347 65 48 chr13 47412291 47413614 -72331284 + HERVL18 LTR ERVL 2728 4079 -1264 275 234 89 81 chr13 47414298 47414422 -72330476 + MER4B-int LTR ERV1 5633 5757 -1365 251 338 88 34 chr13 47414631 47414835 -72330063 + MER4B-int LTR ERV1 5997 6211 -911 510 395 7 3 chr13 47414987 47415276 -72329622 + MER4B-int LTR ERV1 6396 6685 -437 567 198 0 52 chr13 47415453 47415569 -72329329 + MER4B-int LTR ERV1 5968 6077 -681 962 169 79 0 chr13 47415816 47415994 -72328904 + LTR47A LTR ERVL 261 452 0 3602 95 12 16 chr13 47416053 47416548 -72328350 + LTR15 LTR ERV1 1 493 0 21 36 0 0 chr13 47416778 47416806 -72328092 + AT_rich Low_complexity Low_complexity 1 28 0 201 274 0 20 chr13 47417115 47417166 -72327732 - L2 LINE L2 -12 3260 3211 245 29 0 29 chr13 47417363 47417398 -72327500 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 948 248 173 18 chr13 47417399 47417936 -72326962 - L2 LINE L2 -14 3299 2688 2676 81 32 46 chr13 47417943 47417991 -72326907 - THE1B LTR MaLR 0 364 317 2034 143 0 7 chr13 47417991 47418291 -72326607 - AluSx SINE Alu -14 298 1 2676 81 32 46 chr13 47418291 47418611 -72326287 - THE1B LTR MaLR -47 317 1 707 213 8 0 chr13 47418654 47418781 -72326117 - FRAM SINE Alu -48 128 1 2440 95 0 0 chr13 47418831 47419135 -72325763 + AluSc SINE Alu 3 306 -3 383 247 40 40 chr13 47419188 47419338 -72325560 - L2 LINE L2 0 3313 3164 779 178 35 47 chr13 47419421 47419590 -72325308 - MLT2D LTR ERVL 0 414 248 2696 119 19 67 chr13 47419593 47420214 -72324684 - MER4E LTR ERV1 -1 765 1 959 221 21 21 chr13 47420268 47420508 -72324390 - MLT2D LTR ERVL -169 245 6 213 295 74 42 chr13 47420541 47420636 -72324262 - L2 LINE L2 -223 3049 2952 655 215 74 6 chr13 47421926 47422089 -72322809 - MIR SINE MIR 0 262 89 316 247 35 0 chr13 47422487 47422572 -72322326 - MER5A DNA MER1_type -76 113 26 2065 172 23 48 chr13 47422759 47423155 -72321743 + MLT1B LTR MaLR 1 386 -4 464 237 50 14 chr13 47423583 47423722 -72321176 + LTR67 LTR ERVL 408 551 -6 1685 159 65 17 chr13 47423983 47424189 -72320709 + LTR64 LTR ERVK 5 200 -358 2124 117 3 7 chr13 47424189 47424487 -72320411 + AluSx SINE Alu 1 297 -15 1685 159 65 17 chr13 47424487 47424720 -72320178 + LTR64 LTR ERVK 200 529 -29 3894 172 27 56 chr13 47424871 47425768 -72319130 + LTR67-int LTR ERVL 310 1180 -4163 627 196 103 58 chr13 47425780 47426004 -72318894 + LOR1-int LTR ERV1 1461 1694 -6426 344 31 31 31 chr13 47426010 47426074 -72318824 + (TA)n Simple_repeat Simple_repeat 1 64 0 286 330 10 0 chr13 47426086 47426186 -72318712 - L2 LINE L2 -463 2851 2751 329 194 0 15 chr13 47426207 47426274 -72318624 - MIR SINE MIR -6 256 191 743 258 36 10 chr13 47426305 47426499 -72318399 + MIR SINE MIR 26 224 -38 189 336 39 16 chr13 47426747 47426875 -72318023 - L2 LINE L2 -281 2991 2861 1278 194 72 25 chr13 47427091 47427369 -72317529 + AluJo SINE Alu 1 291 -21 869 292 136 45 chr13 47427396 47428025 -72316873 - L2 LINE L2 -4 3309 2738 1269 153 40 179 chr13 47428025 47428449 -72316449 + MLT1A1 LTR MaLR 1 365 0 2331 169 98 7 chr13 47428450 47428869 -72316029 - MSTB2 LTR MaLR 0 457 1 869 292 136 45 chr13 47428869 47428987 -72315911 - L2 LINE L2 -574 2739 2496 264 254 30 0 chr13 47429035 47429102 -72315796 - MLT1J LTR MaLR -61 450 382 574 116 0 0 chr13 47429125 47429211 -72315687 + MLT-int LTR MaLR 1429 1514 -221 554 279 165 56 chr13 47429214 47429525 -72315373 - L2 LINE L2 -820 2494 2129 2242 71 4 4 chr13 47429525 47429836 -72315062 + AluY SINE Alu 1 311 0 554 279 165 56 chr13 47429836 47429918 -72314980 - L2 LINE L2 -1185 2129 2057 723 188 125 40 chr13 47429926 47430198 -72314700 + L1MC5 LINE L1 7635 7929 -32 2234 289 110 29 chr13 47430214 47431308 -72313590 - L2 LINE L2 -1248 2066 858 923 152 0 0 chr13 47431308 47431440 -72313458 + FLAM_C SINE Alu 1 132 -1 2234 289 110 29 chr13 47431440 47431588 -72313310 - L2 LINE L2 -2456 858 723 237 191 0 0 chr13 47432247 47432289 -72312609 - MLT2C2 LTR ERVL -1 463 422 231 167 0 0 chr13 47432289 47432331 -72312567 + (CA)n Simple_repeat Simple_repeat 1 42 0 399 180 56 11 chr13 47432345 47432434 -72312464 - MLT2C1 LTR ERVL -57 340 248 1094 153 159 52 chr13 47432434 47432742 -72312156 + MER4A LTR ERV1 1 341 -323 611 130 210 22 chr13 47432815 47432953 -72311945 + MER4C LTR ERV1 302 465 0 1279 146 190 4 chr13 47432953 47433221 -72311677 - MLT2C2 LTR ERVL -146 318 1 228 317 89 24 chr13 47433646 47433769 -72311129 - MIR SINE MIR -21 241 111 1009 156 7 7 chr13 47433773 47434046 -72310852 - MLT1A1 LTR MaLR -2 363 1 326 217 14 0 chr13 47434742 47434811 -72310087 - L2 LINE L2 -1 3312 3243 539 258 101 56 chr13 47435985 47436211 -72308687 - LTR33A LTR ERVL -61 462 248 2282 131 46 22 chr13 47436211 47436577 -72308321 + THE1C LTR MaLR 1 375 0 539 258 101 56 chr13 47436577 47436744 -72308154 - LTR33A LTR ERVL -275 248 13 1355 229 34 26 chr13 47438331 47438681 -72306217 - MER4D LTR ERV1 -8 895 543 482 254 25 25 chr13 47438678 47438851 -72306047 - MER4E LTR ERV1 -590 282 1 * 1128 212 183 59 chr13 47439451 47439894 -72305004 - MLT1D LTR MaLR -7 498 1 2243 112 7 7 chr13 47440000 47440305 -72304593 - AluSq SINE Alu -8 305 1 22 35 0 0 chr13 47441162 47441191 -72303707 + AT_rich Low_complexity Low_complexity 1 29 0 2232 95 7 0 chr13 47441191 47441485 -72303413 - AluSg1 SINE Alu 0 309 14 1566 197 13 17 chr13 47441485 47441784 -72303114 - AluJb SINE Alu -14 298 1 1780 107 0 4 chr13 47441831 47442065 -72302833 - AluSg SINE Alu -77 233 1 2117 128 14 4 chr13 47442334 47442693 -72302205 - L1MA5 LINE L1 -303 5997 5634 1076 193 0 68 chr13 47442685 47442981 -72301917 - L1 LINE L1 -1727 4419 4144 * 446 296 280 23 chr13 47442981 47443624 -72301274 - L2 LINE L2 -690 2624 1817 486 0 0 0 chr13 47444312 47444366 -72300532 + (TG)n Simple_repeat Simple_repeat 1 54 0 306 0 0 0 chr13 47444468 47444502 -72300396 + (TA)n Simple_repeat Simple_repeat 2 35 0 2113 118 3 0 chr13 47444502 47444789 -72300109 - AluSq SINE Alu -25 288 1 22 0 0 0 chr13 47444883 47444905 -72299993 + AT_rich Low_complexity Low_complexity 1 22 0 1349 122 25 0 chr13 47444913 47445110 -72299788 - L1PA10 LINE L1 -16 6152 5951 405 58 0 0 chr13 47445116 47445168 -72299730 + (TG)n Simple_repeat Simple_repeat 2 53 0 2451 121 6 8 chr13 47445207 47445563 -72299335 - L1PA15 LINE L1 -5 6160 5806 196 326 61 0 chr13 47445817 47445866 -72299032 - L2 LINE L2 -27 3245 3194 393 329 24 6 chr13 47445964 47446128 -72298770 - MLT1L LTR MaLR -105 510 344 25 31 0 0 chr13 47446135 47446167 -72298731 + AT_rich Low_complexity Low_complexity 1 32 0 284 323 0 0 chr13 47446199 47446292 -72298606 - MLT1L LTR MaLR -361 254 162 303 235 60 179 chr13 47446850 47446985 -72297913 + MIR SINE MIR 34 131 -131 1133 78 0 0 chr13 47446985 47447127 -72297771 + L1PA8 LINE L1 6031 6172 0 303 235 60 179 chr13 47447127 47447225 -72297673 + MIR SINE MIR 131 239 -23 181 243 27 0 chr13 47447192 47447229 -72297669 + L2 LINE L2 3211 3248 -24 * 242 113 0 38 chr13 47448099 47448152 -72296746 + (CCG)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr13 47449449 47449473 -72295425 + AT_rich Low_complexity Low_complexity 1 24 0 814 168 0 8 chr13 47450147 47450278 -72294620 + FLAM_A SINE Alu 1 130 -3 1716 172 13 7 chr13 47450281 47450584 -72294314 + AluJo SINE Alu 1 305 -7 500 289 71 40 chr13 47450611 47450864 -72294034 + MIR SINE MIR 2 262 0 254 224 72 40 chr13 47451592 47451717 -72293181 - L1ME4a LINE L1 0 6121 5993 2045 89 19 57 chr13 47451729 47452043 -72292855 + AluSx SINE Alu 1 302 -10 1095 156 0 0 chr13 47452358 47452525 -72292373 + AluJb SINE Alu 135 301 -11 2163 111 10 0 chr13 47452528 47452826 -72292072 + AluSx SINE Alu 1 301 -11 297 146 18 0 chr13 47452920 47452975 -72291923 - MIR SINE MIR -120 142 87 609 230 81 124 chr13 47453009 47453453 -72291445 - L1ME4a LINE L1 -176 5945 5521 418 333 119 0 chr13 47454538 47454715 -72290183 + MIR SINE MIR 16 213 -49 21 0 0 0 chr13 47455003 47455024 -72289874 + AT_rich Low_complexity Low_complexity 1 21 0 341 309 43 15 chr13 47455193 47455362 -72289536 + MIR SINE MIR 2 178 -69 1723 117 43 8 chr13 47455487 47455743 -72289155 - Tigger3(Golem) DNA MER2_type 0 3038 2774 707 257 86 38 chr13 47455748 47455856 -72289042 - L1MCc LINE L1 -3546 3395 3294 2384 71 14 0 chr13 47455856 47456153 -72288745 - AluSg SINE Alu -9 301 1 707 257 86 38 chr13 47456153 47456383 -72288515 - L1MCc LINE L1 -3647 3294 3041 506 275 58 36 chr13 47456407 47456683 -72288215 - L1MCc LINE L1 -6125 298 17 246 241 0 23 chr13 47456859 47456946 -72287952 - L1M4 LINE L1 -3024 3122 3038 3285 207 51 53 chr13 47457397 47457896 -72287002 - L1ME4a LINE L1 -886 5260 4762 2549 51 3 6 chr13 47457896 47458208 -72286690 - AluY SINE Alu 0 311 1 3285 207 51 53 chr13 47458208 47458655 -72286243 - L1ME4a LINE L1 -1384 4762 4316 2128 79 0 4 chr13 47458682 47458947 -72285951 + AluSq SINE Alu 5 268 -45 444 276 21 14 chr13 47458955 47459100 -72285798 - L1MA9 LINE L1 -164 6148 6003 4013 175 26 18 chr13 47459105 47459877 -72285021 - L1P LINE L1 -1411 4735 3958 2223 95 13 0 chr13 47459878 47460184 -72284714 - L1P5 LINE L1 -367 5787 5478 444 67 0 0 chr13 47460880 47460940 -72283958 + (CA)n Simple_repeat Simple_repeat 1 60 0 2210 97 3 0 chr13 47464677 47464977 -72279921 + AluSg SINE Alu 1 301 -9 423 175 68 0 chr13 47465378 47465478 -72279420 - L1MA9 LINE L1 -354 5943 5838 23 33 0 0 chr13 47465501 47465531 -72279367 + GC_rich Low_complexity Low_complexity 1 30 0 1328 143 25 31 chr13 47465549 47465699 -72279199 - L1P5 LINE L1 -665 5489 5340 2191 116 0 0 chr13 47465699 47466001 -72278897 + AluSq SINE Alu 1 302 -11 1328 143 25 31 chr13 47466001 47466231 -72278667 - L1P5 LINE L1 -814 5340 5104 1317 152 5 9 chr13 47466243 47466467 -72278431 - L1MA9 LINE L1 -371 5941 5719 * 4617 228 26 7 chr13 47466447 47467628 -72277270 - L1M4 LINE L1 -1785 4361 3158 4496 131 25 37 chr13 47468176 47468952 -72275946 - L1MA4 LINE L1 -1 6299 5534 366 270 0 35 chr13 47468978 47469093 -72275805 - L1ME1 LINE L1 -272 5894 5784 2406 100 9 3 chr13 47469101 47469430 -72275468 - L1PA13 LINE L1 -14 6149 5819 682 289 68 19 chr13 47469716 47470024 -72274874 - L1MC4a LINE L1 -1906 5902 5580 655 304 80 28 chr13 47470054 47470340 -72274558 + L2 LINE L2 3013 3313 0 185 0 40 0 chr13 47470466 47470491 -72274407 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 180 215 31 46 chr13 47470543 47470608 -72274290 + L2 LINE L2 1365 1428 -1886 21 57 0 0 chr13 47473247 47473282 -72271616 + AT_rich Low_complexity Low_complexity 1 35 0 366 185 148 0 chr13 47473912 47473993 -72270905 + L1MA9 LINE L1 4 96 -6045 6570 192 48 7 chr13 47474005 47475420 -72269478 + L1MA9 LINE L1 2764 4236 -1974 1360 166 105 0 chr13 47475421 47475668 -72269230 + MSTC LTR MaLR 1 273 -155 1968 143 13 3 chr13 47475678 47475992 -72268906 + L1MA9 LINE L1 5531 5847 -529 340 238 12 0 chr13 47475992 47476072 -72268826 - Tigger5 DNA MER2_type 0 2323 2243 265 175 0 0 chr13 47476089 47476129 -72268769 - Tigger5 DNA MER2_type -2277 46 7 2738 129 38 62 chr13 47476130 47476406 -72268492 + L1MA9 LINE L1 5840 6121 -255 1469 166 10 55 chr13 47476406 47476713 -72268185 + AluJo SINE Alu 9 301 -11 2738 129 38 62 chr13 47476713 47476881 -72268017 + L1MA9 LINE L1 6121 6271 -105 2044 154 27 15 chr13 47476881 47477212 -72267686 - MER44D DNA MER2_type 0 609 5 2738 129 38 62 chr13 47477212 47477316 -72267582 + L1MA9 LINE L1 6271 6376 0 293 282 86 17 chr13 47477852 47477969 -72266929 - L1ME4a LINE L1 -33 6088 5964 445 281 57 12 chr13 47477975 47478221 -72266677 - L1ME4a LINE L1 -188 5933 5677 407 192 0 0 chr13 47478228 47478301 -72266597 - L1MA1 LINE L1 0 6302 6230 28320 68 4 0 chr13 47478965 47482670 -72262228 - L1P LINE L1 -2414 3732 13 1726 216 67 22 chr13 47482768 47483216 -72261682 + L1M4 LINE L1 4744 5211 -935 28 0 0 0 chr13 47483670 47483698 -72261200 + AT_rich Low_complexity Low_complexity 1 28 0 3040 207 44 19 chr13 47483780 47484484 -72260414 - L1ME1 LINE L1 -5 6161 5440 336 308 57 57 chr13 47484849 47485008 -72259890 - MIR SINE MIR 0 262 104 213 273 0 15 chr13 47485009 47485075 -72259823 + (TGAA)n Simple_repeat Simple_repeat 3 67 0 748 200 84 5 chr13 47487503 47487693 -72257205 + L1MC4 LINE L1 6459 6663 -1379 180 0 0 0 chr13 47488958 47488978 -72255920 + (T)n Simple_repeat Simple_repeat 1 20 0 360 0 0 0 chr13 47489230 47489270 -72255628 + (TG)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr13 47489493 47489521 -72255377 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 47490559 47490587 -72254311 + AT_rich Low_complexity Low_complexity 1 28 0 182 250 104 0 chr13 47490990 47491038 -72253860 - L2 LINE L2 -4 3268 3216 22 0 0 0 chr13 47491448 47491470 -72253428 + AT_rich Low_complexity Low_complexity 1 22 0 226 187 122 93 chr13 47492138 47492245 -72252653 - HAL1b LINE L1 -7 1341 1232 16401 150 27 12 chr13 47492253 47493446 -72251452 + L1MA1 LINE L1 3248 4422 -3299 6342 167 44 21 chr13 47493446 47494531 -72250367 - L1PA14 LINE L1 -17 6144 5085 2174 116 3 0 chr13 47494531 47494824 -72250074 - AluSx SINE Alu -18 294 1 6342 167 44 21 chr13 47494824 47495849 -72249049 - L1PA14 LINE L1 -1076 5085 4008 16401 150 27 12 chr13 47495849 47499061 -72245837 + L1MA1 LINE L1 4422 7721 0 2420 271 105 20 chr13 47499066 47500204 -72244694 - HAL1b LINE L1 -111 1237 4 392 295 22 7 chr13 47500373 47500512 -72244386 + MER117 DNA MER1_type 4 144 -53 395 342 32 26 chr13 47500664 47500819 -72244079 - L2 LINE L2 0 3272 3117 560 134 42 113 chr13 47500862 47501004 -72243894 - LTR8A LTR ERV1 0 727 596 76 100 0 0 chr13 47502228 47502479 -72242419 + AT_rich Low_complexity Low_complexity 1 251 0 320 388 6 12 chr13 47503008 47503168 -72241730 - L2 LINE L2 -6 3307 3149 1634 195 96 54 chr13 47504199 47504759 -72240139 - L1MC5 LINE L1 -50 7911 7328 2282 89 0 16 chr13 47504791 47505095 -72239803 - AluSg SINE Alu -11 299 1 27 49 0 0 chr13 47505183 47505224 -72239674 + AT_rich Low_complexity Low_complexity 1 41 0 1852 162 0 19 chr13 47506117 47506431 -72238467 + AluJo SINE Alu 1 308 -4 276 229 72 24 chr13 47506595 47506678 -72238220 - MIR3 SINE MIR -11 197 111 1336 142 29 8 chr13 47506957 47507197 -72237701 + Tigger2 DNA MER2_type 1 245 -2473 702 144 70 53 chr13 47507258 47507445 -72237453 + Tigger2 DNA MER2_type 2451 2640 -78 965 173 6 0 chr13 47507454 47507616 -72237282 + FAM SINE Alu 1 46 -3 406 186 0 43 chr13 47507616 47507686 -72237212 + Tigger2 DNA MER2_type 2649 2715 -3 387 208 14 0 chr13 47508564 47508636 -72236262 - L2 LINE L2 0 3313 3241 2370 86 3 0 chr13 47509684 47509987 -72234911 + AluSq SINE Alu 1 304 -9 21 0 0 0 chr13 47511470 47511491 -72233407 + AT_rich Low_complexity Low_complexity 1 21 0 2311 85 0 0 chr13 47511573 47511866 -72233032 + AluSq SINE Alu 1 293 -20 1016 318 87 43 chr13 47512044 47512873 -72232025 + L2 LINE L2 2452 3313 0 192 330 136 19 chr13 47512954 47513057 -72231841 - L2 LINE L2 -240 3032 2918 4521 171 49 1 chr13 47513088 47513877 -72231021 - MER21B LTR ERV1 -36 827 1 272 188 0 0 chr13 47514168 47514216 -72230682 + MER5B DNA MER1_type 1 48 -130 249 327 79 52 chr13 47514483 47514636 -72230262 - L2 LINE L2 -1070 2244 2097 1957 150 36 27 chr13 47514636 47514970 -72229928 + MER1B DNA MER1_type 1 337 0 249 327 79 52 chr13 47514970 47515228 -72229670 - L2 LINE L2 -1217 2097 1818 2149 90 33 0 chr13 47515228 47515527 -72229371 + AluSx SINE Alu 1 309 -3 249 327 79 52 chr13 47515527 47515557 -72229341 - L2 LINE L2 -1496 1818 1790 400 246 65 87 chr13 47516543 47516919 -72227979 - L1MEc LINE L1 -833 1743 1440 2444 117 0 3 chr13 47517687 47518037 -72226861 - L1PA16 LINE L1 -136 6030 5682 30 27 0 0 chr13 47518402 47518439 -72226459 + AT_rich Low_complexity Low_complexity 1 37 0 1739 174 3 3 chr13 47518439 47518727 -72226171 - AluSq SINE Alu -25 288 1 200 132 26 0 chr13 47518847 47518885 -72226013 + (TATAA)n Simple_repeat Simple_repeat 5 43 0 2198 107 7 0 chr13 47519069 47519368 -72225530 + AluSx SINE Alu 3 303 -9 351 288 102 8 chr13 47520287 47520405 -72224493 + MIR SINE MIR 7 135 -127 6438 137 58 21 chr13 47520559 47521745 -72223153 - Tigger3b DNA MER2_type 0 1231 2 187 211 88 53 chr13 47521970 47522027 -72222871 + MIR SINE MIR 174 232 -30 716 191 0 8 chr13 47522251 47522382 -72222516 + FLAM_C SINE Alu 2 131 -2 2193 112 0 0 chr13 47522528 47522832 -72222066 + AluSc SINE Alu 1 304 -5 23 97 0 0 chr13 47522934 47523006 -72221892 + AT_rich Low_complexity Low_complexity 1 72 0 6808 48 7 0 chr13 47524552 47525886 -72219012 - L1PA5 LINE L1 -6 6148 4810 190 291 105 23 chr13 47526761 47526847 -72218051 - L2 LINE L2 -1 3312 3220 504 189 27 9 chr13 47527303 47527414 -72217484 - L1ME3A LINE L1 -14 6156 6044 205 300 17 0 chr13 47527707 47527767 -72217131 + L3b LINE CR1 1393 1453 -130 293 293 93 21 chr13 47527990 47528130 -72216768 + L2 LINE L2 2601 2750 -564 1481 246 84 21 chr13 47528302 47528732 -72216166 + L1ME LINE L1 197 653 -5417 720 140 26 0 chr13 47528774 47528888 -72216010 + AluJo/FLAM SINE Alu 1 117 -185 1001 160 16 41 chr13 47528888 47528968 -72215930 + AluJo SINE Alu 2 189 -123 21 36 0 0 chr13 47528988 47529016 -72215882 + AT_rich Low_complexity Low_complexity 1 28 0 969 185 23 6 chr13 47529044 47529217 -72215681 - Tigger3(Golem) DNA MER2_type 0 3036 2861 * 4221 173 75 22 chr13 47529216 47530163 -72214735 + Charlie1 DNA MER1_type 1612 2608 -153 1260 162 16 76 chr13 47530251 47530566 -72214332 + L1MB8 LINE L1 5855 6150 -28 690 136 37 37 chr13 47530567 47530729 -72214169 + Charlie1 DNA MER1_type 2600 2761 0 529 271 76 34 chr13 47531044 47531280 -72213618 - L2 LINE L2 -825 2489 2244 633 250 159 9 chr13 47531298 47531518 -72213380 - MIR SINE MIR -8 254 2 630 308 110 47 chr13 47531519 47531725 -72213173 - L2 LINE L2 -1101 2213 2022 2098 124 3 10 chr13 47531725 47532057 -72212841 + AluSx SINE Alu 3 312 0 630 308 110 47 chr13 47532057 47532386 -72212512 - L2 LINE L2 -1292 2022 1644 413 200 227 22 chr13 47532389 47532574 -72212324 - MLT1H1 LTR MaLR -7 548 326 1580 188 31 3 chr13 47532718 47533006 -72211892 + AluJo SINE Alu 1 296 -16 2967 218 42 46 chr13 47533481 47534312 -72210586 - L1MEc LINE L1 -3684 2531 1698 663 188 8 0 chr13 47534312 47534429 -72210469 + FLAM_C SINE Alu 1 118 -15 2967 218 42 46 chr13 47534429 47534453 -72210445 - L1MEc LINE L1 -4517 1698 1675 2348 92 0 7 chr13 47534453 47534757 -72210141 - AluSg SINE Alu -8 302 1 2967 218 42 46 chr13 47534757 47534937 -72209961 - L1MEc LINE L1 -4540 1675 1541 2275 119 0 0 chr13 47534946 47535248 -72209650 - AluSx SINE Alu -10 302 1 4295 224 25 23 chr13 47535282 47536409 -72208489 - L1MEc LINE L1 -5224 1172 44 13242 79 21 29 chr13 47536787 47538805 -72206093 + L1PA7 LINE L1 4 2044 -4417 6951 64 6 0 chr13 47538805 47540486 -72204412 + L1PA7 LINE L1 4783 6469 0 24 0 0 0 chr13 47541048 47541072 -72203826 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr13 47541369 47541397 -72203501 + AT_rich Low_complexity Low_complexity 1 28 0 210 286 229 14 chr13 47541435 47541505 -72203393 - MIR SINE MIR -155 107 23 622 273 164 5 chr13 47543040 47543260 -72201638 - MIR SINE MIR 0 262 8 343 232 53 21 chr13 47543406 47543501 -72201397 - MIR SINE MIR -70 192 95 321 187 220 11 chr13 47543505 47543596 -72201302 + MIR SINE MIR 83 192 -70 1716 156 20 17 chr13 47545208 47545510 -72199388 - AluJo SINE Alu -9 303 1 922 151 84 39 chr13 47546454 47546633 -72198265 - MER5A DNA MER1_type 0 189 3 961 167 0 0 chr13 47546705 47546855 -72198043 + AluJb SINE Alu 152 301 -11 437 285 102 12 chr13 47547230 47547365 -72197533 + HAL1 LINE L1 1246 1367 -1140 2052 123 7 3 chr13 47547365 47547658 -72197240 - AluSg SINE Alu -15 295 2 437 285 102 12 chr13 47547658 47547778 -72197120 + HAL1 LINE L1 1367 1524 -983 260 347 40 17 chr13 47547799 47547972 -72196926 + HAL1 LINE L1 1611 1787 -720 187 125 175 0 chr13 47548225 47548265 -72196633 - L2 LINE L2 -4 3309 3263 638 213 69 6 chr13 47548359 47548519 -72196379 + MER58B DNA MER1_type 170 339 -2 1846 231 55 18 chr13 47548521 47548933 -72195965 - L1MC4a LINE L1 -1652 6156 5668 267 103 0 0 chr13 47548933 47548972 -72195926 + (TG)n Simple_repeat Simple_repeat 2 40 0 1846 231 55 18 chr13 47548972 47549140 -72195758 - L1MC4a LINE L1 -2140 5668 5508 701 183 9 0 chr13 47549609 47549724 -72195174 + FLAM_A SINE Alu 1 116 -17 189 0 0 0 chr13 47549730 47549751 -72195147 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 238 339 62 8 chr13 47549751 47549881 -72195017 + MIR3 SINE MIR 51 187 -21 25 65 0 0 chr13 47551091 47551137 -72193761 + AT_rich Low_complexity Low_complexity 1 46 0 649 167 0 0 chr13 47551972 47552086 -72192812 - FRAM SINE Alu 0 176 63 2457 79 0 0 chr13 47552406 47552710 -72192188 - AluSc SINE Alu -5 304 1 1688 161 37 3 chr13 47553001 47553299 -72191599 + MER7A DNA MER2_type 1 306 -40 33 73 0 0 chr13 47553837 47553905 -72190993 + AT_rich Low_complexity Low_complexity 1 68 0 2023 122 17 0 chr13 47556895 47557189 -72187709 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr13 47557992 47558014 -72186884 + AT_rich Low_complexity Low_complexity 1 22 0 1968 126 33 3 chr13 47558104 47558405 -72186493 - AluSx SINE Alu -2 310 1 30945 108 20 56 chr13 47558964 47565330 -72179568 + L1PA7 LINE L1 10 6142 -12 1117 216 14 0 chr13 47565410 47565628 -72179270 + AluJb SINE Alu 84 304 -8 1493 197 42 0 chr13 47565670 47565934 -72178964 + AluJb SINE Alu 1 275 -37 186 43 0 0 chr13 47565941 47565964 -72178934 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 680 80 0 0 chr13 47566074 47566174 -72178724 - AluSg/x SINE Alu 0 310 211 863 226 0 11 chr13 47566575 47566752 -72178146 + FAM SINE Alu 1 175 0 2156 131 3 3 chr13 47567582 47567894 -72177004 + AluSx SINE Alu 1 312 0 745 216 45 6 chr13 47568098 47568274 -72176624 - MER105 DNA DNA -20 184 2 603 185 8 8 chr13 47568395 47568514 -72176384 + FLAM_A SINE Alu 14 132 -10 259 306 122 10 chr13 47568519 47568617 -72176281 + MIR3 SINE MIR 87 195 -13 309 302 30 23 chr13 47568662 47568782 -72176116 - MIR SINE MIR -66 142 43 2286 177 8 13 chr13 47569583 47569979 -72174919 - MSTB LTR MaLR 0 426 33 227 269 0 0 chr13 47569980 47570032 -72174866 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570033 47570085 -72174813 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570086 47570138 -72174760 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570139 47570191 -72174707 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570192 47570244 -72174654 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570245 47570297 -72174601 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570298 47570350 -72174548 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570351 47570403 -72174495 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570404 47570456 -72174442 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570457 47570509 -72174389 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570510 47570562 -72174336 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570563 47570615 -72174283 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570616 47570668 -72174230 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570669 47570721 -72174177 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570722 47570774 -72174124 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570775 47570827 -72174071 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570828 47570880 -72174018 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570881 47570933 -72173965 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570934 47570986 -72173912 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47570987 47571039 -72173859 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571040 47571092 -72173806 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571093 47571145 -72173753 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571146 47571198 -72173700 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571199 47571251 -72173647 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571252 47571304 -72173594 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571305 47571357 -72173541 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571358 47571410 -72173488 - MSTB LTR MaLR -342 84 33 227 269 0 0 chr13 47571411 47571463 -72173435 - MSTB LTR MaLR -342 84 33 474 202 0 0 chr13 47571464 47571548 -72173350 - MSTB LTR MaLR -342 84 1 1372 132 20 0 chr13 47572294 47572491 -72172407 + 7SLRNA srpRNA srpRNA 1 201 -119 27 62 0 0 chr13 47572677 47572725 -72172173 + AT_rich Low_complexity Low_complexity 1 48 0 365 271 34 73 chr13 47572779 47572956 -72171942 + L1M4 LINE L1 4332 4501 -1645 2115 113 3 0 chr13 47573483 47573803 -72171095 + AluSx SINE Alu 1 321 0 521 179 86 34 chr13 47573813 47573930 -72170968 + FRAM SINE Alu 8 130 -46 30 0 0 0 chr13 47573942 47573972 -72170926 + AT_rich Low_complexity Low_complexity 1 30 0 1166 238 104 3 chr13 47574933 47575232 -72169666 - L2 LINE L2 -15 3298 2970 24 0 0 0 chr13 47575796 47575820 -72169078 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr13 47576326 47576356 -72168542 + AT_rich Low_complexity Low_complexity 1 30 0 842 146 0 0 chr13 47576926 47577049 -72167849 - FLAM_C SINE Alu -10 123 1 21 0 0 0 chr13 47577136 47577157 -72167741 + AT_rich Low_complexity Low_complexity 1 21 0 705 186 0 29 chr13 47577190 47577330 -72167568 + FLAM_C SINE Alu 1 136 -7 396 312 40 7 chr13 47577490 47577667 -72167231 + L1MDb LINE L1 410 656 -5753 3381 192 50 28 chr13 47577737 47578877 -72166021 - L1MD1 LINE L1 -222 6020 4856 847 173 96 5 chr13 47578873 47579081 -72165817 + L1MDb LINE L1 2363 2589 -3998 * 366 358 48 52 chr13 47579113 47579381 -72165517 - L2 LINE L2 -850 2464 2198 2278 102 0 3 chr13 47579381 47579674 -72165224 + AluSx SINE Alu 1 292 -20 1435 257 48 60 chr13 47580430 47580928 -72163970 - MLT1F LTR MaLR -50 492 1 204 273 0 0 chr13 47581033 47581077 -72163821 - L2 LINE L2 -8 3305 3262 393 250 50 0 chr13 47581227 47581327 -72163571 - MIR SINE MIR -30 232 128 239 359 15 103 chr13 47581340 47581602 -72163296 + L2 LINE L2 2925 3163 -109 * 607 277 134 26 chr13 47581601 47581832 -72163066 + MIR SINE MIR 5 260 -2 355 277 53 0 chr13 47581850 47581944 -72162954 - MIR SINE MIR -15 247 149 618 332 137 4 chr13 47582125 47582351 -72162547 + MIR SINE MIR 7 262 0 208 254 0 0 chr13 47582972 47583027 -72161871 + (TA)n Simple_repeat Simple_repeat 1 55 0 205 314 66 58 chr13 47583075 47583212 -72161686 + MER5B DNA MER1_type 24 161 -17 1589 147 0 12 chr13 47584068 47584313 -72160585 - MLT1A1 LTR MaLR -8 357 116 1660 93 0 0 chr13 47585223 47585439 -72159459 - AluY SINE Alu -13 298 83 23 0 0 0 chr13 47585938 47585961 -72158937 + AT_rich Low_complexity Low_complexity 1 23 0 265 265 60 0 chr13 47586498 47586581 -72158317 + MIR SINE MIR 119 206 -56 313 215 62 0 chr13 47586744 47586809 -72158089 + MER96 DNA MER1_type? 107 175 0 3090 136 53 20 chr13 47586924 47587258 -72157640 - MER21A LTR ERV1 -6 925 567 2030 128 10 0 chr13 47587258 47587554 -72157344 + AluSx SINE Alu 3 301 -11 3090 136 53 20 chr13 47587554 47587725 -72157173 - MER21A LTR ERV1 -364 567 403 723 172 98 23 chr13 47587759 47587933 -72156965 - MER21A LTR ERV1 -667 264 78 187 314 111 53 chr13 47588444 47588651 -72156247 + L2 LINE L2 2835 3053 -219 2197 117 3 0 chr13 47588977 47589275 -72155623 - AluSx SINE Alu -13 299 1 1465 296 82 15 chr13 47589363 47590324 -72154574 - L2 LINE L2 0 3313 2294 555 269 166 9 chr13 47590536 47590759 -72154139 - MIR SINE MIR 0 262 5 252 336 123 62 chr13 47591835 47591981 -72152917 - MIR SINE MIR -89 173 19 676 270 135 0 chr13 47592140 47592392 -72152506 - HAL1 LINE L1 -1540 967 682 524 296 6 6 chr13 47592402 47592574 -72152324 - HAL1 LINE L1 -2192 315 144 512 126 0 35 chr13 47592578 47592753 -72152145 + AluJo SINE Alu 85 291 -21 279 223 75 21 chr13 47592768 47592862 -72152036 - HAL1 LINE L1 -2401 106 8 12375 130 41 32 chr13 47592925 47595188 -72149710 - L1M LINE L1 -803 5343 3089 1104 302 50 9 chr13 47595184 47595764 -72149134 - L1M4 LINE L1 -2469 3677 3074 * 2827 103 86 0 chr13 47596610 47597038 -72147860 - MER4C LTR ERV1 0 465 1 540 274 146 24 chr13 47597046 47597258 -72147640 - MIR SINE MIR -23 239 2 944 284 166 41 chr13 47597504 47598371 -72146527 - L2 LINE L2 -40 3273 2264 742 209 15 0 chr13 47599384 47599518 -72145380 + MIR SINE MIR 18 153 -109 7998 169 63 37 chr13 47599546 47601202 -72143696 - MER52A LTR ERV1 -20 1735 37 897 190 27 0 chr13 47601508 47601692 -72143206 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr13 47601996 47602017 -72142881 + AT_rich Low_complexity Low_complexity 1 21 0 457 56 0 14 chr13 47602262 47602334 -72142564 + L1PB1 LINE L1 6069 6139 -12 1192 177 98 0 chr13 47602346 47602561 -72142337 + MER21B LTR ERV1 277 512 -351 2034 100 14 4 chr13 47602904 47603283 -72141615 - AluSx SINE Alu 0 382 1 1809 167 11 3 chr13 47603692 47603979 -72140919 + AluJb SINE Alu 1 289 -23 4968 158 41 23 chr13 47604014 47604832 -72140066 - L1MB7 LINE L1 -9 6175 5373 2319 110 0 0 chr13 47604832 47605142 -72139756 - AluSg SINE Alu 0 310 1 1889 162 0 3 chr13 47605144 47605434 -72139464 - AluJb SINE Alu -21 291 3 4968 158 41 23 chr13 47605434 47606000 -72138898 - L1MB7 LINE L1 -811 5373 4751 494 303 11 28 chr13 47606175 47606353 -72138545 - L1ME3A LINE L1 -9 6161 5987 24 32 0 0 chr13 47607060 47607091 -72137807 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr13 47607841 47607866 -72137032 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr13 47607970 47607994 -72136904 + (T)n Simple_repeat Simple_repeat 1 24 0 42766 31 21 2 chr13 47608567 47614585 -72130313 + L1HS LINE L1 12 6148 -7 195 42 0 0 chr13 47614593 47614617 -72130281 + (A)n Simple_repeat Simple_repeat 1 24 0 188 163 23 0 chr13 47616647 47616690 -72128208 + (TA)n Simple_repeat Simple_repeat 1 44 0 2530 230 85 51 chr13 47616707 47617472 -72127426 - MER21B LTR ERV1 -54 809 19 32 0 0 0 chr13 47617911 47617943 -72126955 + AT_rich Low_complexity Low_complexity 1 32 0 1198 212 13 0 chr13 47617969 47618195 -72126703 - AluJo SINE Alu -83 229 1 1498 231 67 71 chr13 47618235 47618772 -72126126 - MLT1F LTR MaLR -7 535 1 418 206 71 35 chr13 47618929 47619070 -72125828 - Charlie2a DNA MER1_type -1 2861 2716 442 209 70 76 chr13 47619070 47619228 -72125670 - Charlie2a DNA MER1_type -1199 1663 1507 22 0 0 0 chr13 47620235 47620257 -72124641 + AT_rich Low_complexity Low_complexity 1 22 0 1928 159 0 3 chr13 47621969 47622259 -72122639 + AluJo SINE Alu 6 294 -18 259 221 174 0 chr13 47622447 47622533 -72122365 + Charlie7 DNA MER1_type 2 102 -2510 231 253 21 32 chr13 47622556 47622651 -72122247 + Charlie7 DNA MER1_type 2519 2612 0 1232 112 93 0 chr13 47622675 47622890 -72122008 - L1MA4 LINE L1 0 6300 6066 29 28 0 0 chr13 47623471 47623507 -72121391 + AT_rich Low_complexity Low_complexity 1 36 0 408 267 26 0 chr13 47624986 47625102 -72119796 + L2 LINE L2 2173 2291 -1023 527 319 215 5 chr13 47625234 47625627 -72119271 + L2 LINE L2 2588 3070 -243 890 316 95 34 chr13 47625909 47626289 -72118609 - L2 LINE L2 -27 3286 2884 1024 241 63 25 chr13 47626356 47626675 -72118223 + MER46C DNA MER2_type 1 331 -7 24 0 0 0 chr13 47627189 47627213 -72117685 + AT_rich Low_complexity Low_complexity 1 24 0 1185 234 104 3 chr13 47627777 47628076 -72116822 + L2 LINE L2 2970 3298 -15 30 0 0 0 chr13 47629037 47629067 -72115831 + AT_rich Low_complexity Low_complexity 1 30 0 544 171 86 34 chr13 47629079 47629196 -72115702 - FRAM SINE Alu -46 130 8 2070 120 3 0 chr13 47629209 47629527 -72115371 - AluSx SINE Alu 0 319 1 365 271 34 73 chr13 47630054 47630231 -72114667 - L1M4 LINE L1 -1645 4501 4332 27 62 0 0 chr13 47630285 47630333 -72114565 + AT_rich Low_complexity Low_complexity 1 48 0 1397 126 15 0 chr13 47630519 47630717 -72114181 - 7SLRNA srpRNA srpRNA -119 201 1 595 143 0 0 chr13 47631463 47631547 -72113351 + MSTB LTR MaLR 1 84 -342 317 192 0 0 chr13 47631548 47631600 -72113298 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631601 47631653 -72113245 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631654 47631706 -72113192 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631707 47631759 -72113139 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631760 47631812 -72113086 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631813 47631865 -72113033 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631866 47631918 -72112980 + MSTB LTR MaLR 33 84 -342 317 192 0 0 chr13 47631919 47631971 -72112927 + MSTB LTR MaLR 33 84 -342 323 173 0 0 chr13 47631972 47632024 -72112874 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 47632025 47632077 -72112821 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 47632078 47632130 -72112768 + MSTB LTR MaLR 33 84 -342 286 231 0 0 chr13 47632131 47632183 -72112715 + MSTB LTR MaLR 33 84 -342 2396 169 8 13 chr13 47632234 47632630 -72112268 + MSTB LTR MaLR 33 426 0 296 302 30 23 chr13 47633443 47633563 -72111335 + MIR SINE MIR 43 154 -66 239 306 122 10 chr13 47633608 47633706 -72111192 - MIR3 SINE MIR -13 195 87 632 193 8 8 chr13 47633711 47633830 -72111068 - FLAM_A SINE Alu -10 132 14 771 216 45 6 chr13 47633951 47634127 -72110771 + MER105 DNA DNA 2 184 -20 2174 131 3 3 chr13 47634332 47634644 -72110254 - AluSx SINE Alu 0 312 1 711 184 0 16 chr13 47635472 47635597 -72109301 - FAM SINE Alu -8 41 1 263 299 65 30 chr13 47635816 47636187 -72108711 - L1M4c LINE L1 -3653 2562 2179 385 219 223 53 chr13 47636393 47636707 -72108191 + MLT1H LTR MaLR 39 403 -192 300 244 35 12 chr13 47636814 47636900 -72107998 + MLT1H LTR MaLR 458 545 -4 449 316 24 11 chr13 47637218 47637566 -72107332 - L1M4c LINE L1 -864 1712 1319 4656 223 42 20 chr13 47638077 47639424 -72105474 + L1MD2 LINE L1 2553 3929 -2217 323 222 38 113 chr13 47639434 47639619 -72105279 + L1MD2 LINE L1 4873 5043 -1103 1269 74 0 12 chr13 47639623 47639785 -72105113 + AluSc SINE Alu 1 160 -149 5168 178 76 2 chr13 47639906 47640931 -72103967 + L1MD2 LINE L1 5257 6357 -2 1340 174 81 0 chr13 47641169 47641427 -72103471 + AluJo SINE Alu 14 292 -20 26 0 0 0 chr13 47642143 47642169 -72102729 + AT_rich Low_complexity Low_complexity 1 26 0 2432 89 3 0 chr13 47643387 47643689 -72101209 + AluSx SINE Alu 1 303 -9 390 282 0 27 chr13 47644075 47644186 -72100712 + MIR3 SINE MIR 79 187 -21 21 0 0 0 chr13 47644405 47644426 -72100472 + AT_rich Low_complexity Low_complexity 1 21 0 1070 192 47 0 chr13 47645268 47645461 -72099437 + MER20 DNA MER1_type 18 219 0 208 234 0 0 chr13 47645936 47645983 -72098915 + (TG)n Simple_repeat Simple_repeat 1 47 0 1099 166 90 11 chr13 47646992 47647269 -72097629 + AluSp SINE Alu 5 303 0 875 263 133 16 chr13 47647393 47647701 -72097197 - L1MC4 LINE L1 -923 6961 6542 322 285 49 59 chr13 47648622 47648817 -72096081 + MIR SINE MIR 17 212 -50 236 32 32 0 chr13 47649395 47649426 -72095472 - L2 LINE L2 -19 3294 3263 211 229 83 0 chr13 47649635 47649683 -72095215 + L2 LINE L2 3262 3313 0 390 268 71 42 chr13 47650061 47650119 -72094779 - MIR SINE MIR 0 262 207 2031 205 48 34 chr13 47650119 47650356 -72094542 + MLT1D LTR MaLR 1 233 -272 183 42 0 0 chr13 47650356 47650380 -72094518 + (ATGTG)n Simple_repeat Simple_repeat 5 28 0 2031 205 48 34 chr13 47650380 47650640 -72094258 + MLT1D LTR MaLR 233 505 0 390 268 71 42 chr13 47650640 47650749 -72094149 - MIR SINE MIR -55 207 90 301 235 39 39 chr13 47650819 47650921 -72093977 - MIR SINE MIR -59 149 48 197 294 22 65 chr13 47650970 47651062 -72093836 - MER5A DNA MER1_type -80 109 22 1636 185 7 7 chr13 47651352 47651649 -72093249 + AluJo SINE Alu 16 312 0 22 0 0 0 chr13 47651808 47651830 -72093068 + AT_rich Low_complexity Low_complexity 1 22 0 369 254 69 8 chr13 47652522 47652652 -72092246 + L1ME4a LINE L1 5934 6071 -50 2288 102 0 7 chr13 47652669 47652974 -72091924 - AluSx SINE Alu -9 303 1 22 0 0 0 chr13 47652990 47653012 -72091886 + AT_rich Low_complexity Low_complexity 1 22 0 1698 167 0 7 chr13 47653012 47653288 -72091610 + AluJb SINE Alu 22 295 -17 579 107 12 0 chr13 47653315 47653399 -72091499 - L1PB3 LINE L1 -6 6148 6064 284 202 250 0 chr13 47653864 47653968 -72090930 + MIR SINE MIR 123 252 -10 189 74 0 0 chr13 47654387 47654414 -72090484 + (CA)n Simple_repeat Simple_repeat 1 27 0 2257 217 166 15 chr13 47654663 47655330 -72089568 + MER69 DNA AcHobo 25 792 -1734 757 211 199 23 chr13 47655379 47655640 -72089258 + MER69 DNA AcHobo 105 411 -2115 289 167 0 0 chr13 47655637 47655679 -72089219 + AluSg/x SINE Alu 210 251 -49 * 2285 110 0 0 chr13 47655714 47656014 -72088884 - AluY SINE Alu -9 302 3 315 104 0 0 chr13 47656352 47656400 -72088498 + (ATG)n Simple_repeat Simple_repeat 1 48 0 232 273 26 26 chr13 47656472 47656549 -72088349 - MIR SINE MIR -98 164 88 1687 230 47 12 chr13 47656870 47657278 -72087620 + LTR40c LTR ERVL 44 465 0 354 318 101 61 chr13 47657295 47657493 -72087405 + L2 LINE L2 3067 3272 0 1701 189 34 99 chr13 47658460 47658578 -72086320 - LTR56 LTR ERV1 0 445 321 1948 168 0 0 chr13 47658578 47658876 -72086022 - AluJo SINE Alu -1 311 14 1701 189 34 99 chr13 47658876 47659233 -72085665 - LTR56 LTR ERV1 -124 321 1 187 214 79 67 chr13 47659317 47659406 -72085492 + MIR SINE MIR 3 92 -170 242 283 0 124 chr13 47660203 47660316 -72084582 - L2 LINE L2 -5 3267 3169 1937 64 0 0 chr13 47660404 47660638 -72084260 + L1MA2 LINE L1 6071 6304 0 578 207 36 7 chr13 47660843 47660983 -72083915 - Charlie2a DNA MER1_type 0 2862 2719 538 219 0 41 chr13 47660998 47661121 -72083777 - Charlie2a DNA MER1_type -1234 1628 1511 1326 134 9 209 chr13 47661142 47661567 -72083331 - THE1A LTR MaLR -15 340 1 2161 88 4 0 chr13 47661782 47662056 -72082842 - AluSp SINE Alu -14 299 25 377 229 57 57 chr13 47662056 47662231 -72082667 - Charlie2 DNA MER1_type -2514 268 94 2033 135 3 7 chr13 47662901 47663204 -72081694 - AluSx SINE Alu -10 302 1 192 280 0 40 chr13 47663308 47663358 -72081540 + L2 LINE L2 3241 3288 -25 4464 188 59 17 chr13 47663539 47664367 -72080531 - MER21B LTR ERV1 0 863 1 562 66 0 13 chr13 47664762 47664838 -72080060 + MADE1 DNA Mariner 6 80 0 891 223 6 0 chr13 47665245 47665411 -72079487 - AluJb SINE Alu -14 298 132 2036 148 0 3 chr13 47665412 47665709 -72079189 - AluSx SINE Alu -16 296 1 850 183 80 0 chr13 47666219 47666394 -72078504 + MER53 DNA DNA 1 189 0 1668 181 10 23 chr13 47667565 47667868 -72077030 + AluJb SINE Alu 1 299 -13 1353 119 5 15 chr13 47667868 47668069 -72076829 + AluSq SINE Alu 1 199 -114 216 0 0 0 chr13 47668192 47668216 -72076682 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 3604 146 70 66 chr13 47668263 47668987 -72075911 + LTR8A LTR ERV1 1 727 0 3244 170 50 22 chr13 47669429 47669562 -72075336 - LTR26E LTR ERV1 -2 620 492 2184 112 7 0 chr13 47669562 47669857 -72075041 + AluSc SINE Alu 1 297 -12 3244 170 50 22 chr13 47669857 47670324 -72074574 - LTR26E LTR ERV1 -130 492 3 983 194 99 12 chr13 47670537 47670790 -72074108 + MLT1A2 LTR MaLR 100 374 0 944 104 17 7 chr13 47670810 47670959 -72073939 - THE1C LTR MaLR 0 375 237 257 348 26 0 chr13 47671218 47671333 -72073565 - L1MEd LINE L1 -5286 833 716 969 137 160 0 chr13 47671336 47671511 -72073387 - Tigger7 DNA MER2_type -1 2586 2384 * 2703 170 78 0 chr13 47671510 47671974 -72072924 - Tigger7 DNA MER2_type -233 500 1 256 268 114 57 chr13 47672346 47672469 -72072429 - MIR3 SINE MIR -7 201 72 255 31 0 0 chr13 47673578 47673610 -72071288 + (GA)n Simple_repeat Simple_repeat 2 33 0 1834 177 134 17 chr13 47673804 47674222 -72070676 - MLT1C LTR MaLR 0 467 1 1626 218 102 14 chr13 47675275 47675698 -72069200 + MLT1C LTR MaLR 6 465 -2 230 284 0 54 chr13 47675731 47675805 -72069093 - MIR SINE MIR -119 89 20 216 0 0 0 chr13 47675962 47675986 -72068912 + (TA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr13 47676117 47676141 -72068757 + AT_rich Low_complexity Low_complexity 1 24 0 555 236 42 14 chr13 47676485 47676629 -72068269 - MIR SINE MIR -67 195 48 1435 108 50 67 chr13 47677384 47677624 -72067274 + MER46A DNA MER2_type 1 236 0 840 261 104 24 chr13 47678653 47679029 -72065869 + Tigger8 DNA MER2_type 97 502 -164 27 0 0 0 chr13 47680153 47680180 -72064718 + AT_rich Low_complexity Low_complexity 1 27 0 209 333 0 0 chr13 47681109 47681166 -72063732 + GA-rich Low_complexity Low_complexity 3 59 0 408 271 226 6 chr13 47681856 47682033 -72062865 - MIR SINE MIR -26 236 21 339 239 176 40 chr13 47682575 47682862 -72062036 + L1ME4a LINE L1 5010 5341 -805 462 75 0 0 chr13 47682862 47682929 -72061969 + (TA)n Simple_repeat Simple_repeat 2 68 0 339 239 176 40 chr13 47682929 47682942 -72061956 + L1ME4a LINE L1 5341 5351 -795 228 193 101 73 chr13 47683023 47683132 -72061766 + MER112 DNA MER1_type 149 260 0 1638 160 71 11 chr13 47683754 47684036 -72060862 + AluJo SINE Alu 1 299 -13 24 0 0 0 chr13 47684101 47684125 -72060773 + AT_rich Low_complexity Low_complexity 1 24 0 24 24 0 24 chr13 47684186 47684197 -72060701 + AT_rich Low_complexity Low_complexity 1 11 -30 2028 145 0 3 chr13 47684197 47684486 -72060412 + AluSx SINE Alu 1 288 -24 24 24 0 24 chr13 47684486 47684516 -72060382 + AT_rich Low_complexity Low_complexity 11 41 0 305 272 59 101 chr13 47685348 47685517 -72059381 - MER5B DNA MER1_type 0 178 17 184 232 125 0 chr13 47686233 47686289 -72058609 - L3b LINE CR1 -244 1339 1277 268 340 119 5 chr13 47686301 47686486 -72058412 - MIR SINE MIR -10 252 47 518 302 114 20 chr13 47686503 47686854 -72058044 + L1ME4a LINE L1 5736 6119 -2 266 316 105 30 chr13 47687080 47687213 -72057685 - MIR3 SINE MIR -63 145 3 206 225 0 28 chr13 47688133 47688204 -72056694 + G-rich Low_complexity Low_complexity 3 71 0 24 53 0 0 chr13 47688287 47688325 -72056573 + AT_rich Low_complexity Low_complexity 1 38 0 438 171 34 77 chr13 47688476 47688593 -72056305 - L1PB4 LINE L1 -7 6149 6038 362 317 92 32 chr13 47689095 47689344 -72055554 - L2 LINE L2 -24 3248 2985 495 329 30 0 chr13 47689522 47689686 -72055212 - L2 LINE L2 -572 2742 2574 210 313 24 24 chr13 47689978 47690061 -72054837 - MIR SINE MIR -149 113 31 433 237 26 9 chr13 47691601 47691715 -72053183 - MIR SINE MIR 0 262 147 29 28 0 0 chr13 47691729 47691765 -72053133 + AT_rich Low_complexity Low_complexity 1 36 0 837 145 0 15 chr13 47691765 47691896 -72053002 - FLAM_C SINE Alu -4 129 1 325 284 71 16 chr13 47691901 47692028 -72052870 - MIR SINE MIR -58 150 17 392 231 19 28 chr13 47692197 47692305 -72052593 - MIR SINE MIR -90 172 66 14045 202 28 19 chr13 47692371 47698349 -72046549 - L1MA5A LINE L1 -10 6929 890 21 0 0 0 chr13 47699233 47699254 -72045644 + AT_rich Low_complexity Low_complexity 1 21 0 5240 64 0 3 chr13 47699258 47699933 -72044965 - L1PA7 LINE L1 -6 6148 5476 28747 114 8 64 chr13 47699939 47703251 -72041647 - L1PA7 LINE L1 -17 6137 3375 2320 117 3 0 chr13 47703251 47703560 -72041338 - AluY SINE Alu -1 310 1 28747 114 8 64 chr13 47703560 47706747 -72038151 - L1PA7 LINE L1 -2779 3375 12 285 198 231 58 chr13 47706747 47706868 -72038030 - MIR3 SINE MIR -50 158 17 246 264 41 91 chr13 47707405 47707526 -72037372 + MIR SINE MIR 93 207 -55 193 283 163 43 chr13 47708098 47708190 -72036708 - MIR SINE MIR -85 123 21 1090 119 0 19 chr13 47708513 47708673 -72036225 - AluSx SINE Alu -12 300 144 1047 85 8 0 chr13 47708815 47708944 -72035954 - AluSx SINE Alu -174 139 10 468 350 159 15 chr13 47708975 47709849 -72035049 + L2 LINE L2 1978 2977 -337 446 237 37 104 chr13 47710083 47710336 -72034562 + MIR SINE MIR 9 240 -22 330 132 0 0 chr13 47711413 47711466 -72033432 + (T)n Simple_repeat Simple_repeat 1 53 0 5633 113 15 19 chr13 47713369 47714460 -72030438 - L1PA13 LINE L1 -3 6160 5080 1594 160 8 37 chr13 47714593 47714861 -72030037 - AluJo SINE Alu -31 281 22 238 224 106 47 chr13 47715223 47715308 -72029590 - MIR SINE MIR -20 242 153 1784 169 39 74 chr13 47715316 47715679 -72029219 + MLT1C LTR MaLR 1 344 -123 2595 117 38 17 chr13 47715679 47716097 -72028801 - MSTA LTR MaLR 0 428 2 1784 169 39 74 chr13 47716097 47716217 -72028681 + MLT1C LTR MaLR 344 467 0 300 229 76 19 chr13 47716559 47716664 -72028234 + MER103 DNA DNA 54 164 -2 519 236 94 42 chr13 47716944 47717135 -72027763 - MER90 LTR ERV1 -1 613 413 284 326 56 22 chr13 47717291 47717469 -72027429 - MER89-int LTR ERV1 -408 6393 6210 2499 183 40 4 chr13 47717514 47717985 -72026913 + MLT2B3 LTR ERVL 21 508 -46 238 50 50 0 chr13 47717986 47718026 -72026872 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 382 68 99 19 chr13 47718064 47718226 -72026672 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 334 103 17 0 chr13 47718227 47718285 -72026613 + MLT2B3 LTR ERVL 462 520 0 609 183 0 0 chr13 47718782 47718875 -72026023 - AluJb SINE Alu -58 254 162 13343 92 5 2 chr13 47718922 47721597 -72023301 - L1PA7 LINE L1 -1 6153 3463 592 350 29 51 chr13 47721806 47722332 -72022566 - MER89-int LTR ERV1 -3152 3649 3136 25 65 0 0 chr13 47722480 47722526 -72022372 + AT_rich Low_complexity Low_complexity 1 46 0 26 0 0 0 chr13 47722566 47722592 -72022306 + AT_rich Low_complexity Low_complexity 1 26 0 29 47 0 0 chr13 47723751 47723794 -72021104 + AT_rich Low_complexity Low_complexity 1 43 0 238 293 0 0 chr13 47724181 47724239 -72020659 + GA-rich Low_complexity Low_complexity 3 60 0 379 163 25 25 chr13 47725310 47725390 -72019508 - MER90 LTR ERV1 0 614 535 427 186 115 0 chr13 47725607 47725720 -72019178 - L1MD1 LINE L1 -19 6617 6492 1127 167 11 5 chr13 47725722 47725908 -72018990 - AluJb SINE Alu -4 308 122 689 137 18 30 chr13 47725908 47726076 -72018822 + CT-rich Low_complexity Low_complexity 4 169 0 253 132 0 0 chr13 47726094 47726132 -72018766 - FLAM SINE Alu -24 109 72 3872 179 56 20 chr13 47726132 47727178 -72017720 - L1MD1 LINE L1 -135 6501 5409 35012 71 18 5 chr13 47727192 47732174 -72012724 + L1PA5 LINE L1 11 5028 -1118 7237 44 3 0 chr13 47732177 47733067 -72011831 + L1PA5 LINE L1 5254 6146 -8 3620 218 71 83 chr13 47733080 47734896 -72010002 - L1MD1 LINE L1 -1121 5419 3582 889 180 25 0 chr13 47734896 47735057 -72009841 + AluJb SINE Alu 1 165 -147 3620 218 71 83 chr13 47735057 47736250 -72008648 - L1MD1 LINE L1 -2958 3582 2376 266 87 22 0 chr13 47736250 47736296 -72008602 + (TA)n Simple_repeat Simple_repeat 2 48 0 3620 218 71 83 chr13 47736296 47736615 -72008283 - L1MD1 LINE L1 -4164 2376 1990 2032 125 3 3 chr13 47736615 47736949 -72007949 - AluSq SINE Alu 0 313 1 3620 218 71 83 chr13 47736949 47737146 -72007752 - L1MD1 LINE L1 -4550 1990 1792 495 268 122 18 chr13 47739602 47739766 -72005132 - MIR SINE MIR -9 253 73 665 300 33 49 chr13 47739945 47740335 -72004563 + HAL1 LINE L1 501 884 -1623 1700 245 97 9 chr13 47740386 47740793 -72004105 + HAL1 LINE L1 1710 2200 -307 3725 168 23 34 chr13 47740793 47741533 -72003365 + MER44D DNA MER2_type 2 605 0 1700 245 97 9 chr13 47741533 47741795 -72003103 + HAL1 LINE L1 2200 2438 -69 30 27 0 0 chr13 47741839 47741876 -72003022 + AT_rich Low_complexity Low_complexity 1 37 0 417 242 2 7 chr13 47742089 47742226 -72002672 - MLT1L LTR MaLR 0 615 454 1117 156 123 0 chr13 47743947 47744159 -72000739 - LTR64 LTR ERVK -90 468 231 2313 123 0 0 chr13 47744170 47744479 -72000419 - AluSq SINE Alu -4 309 1 2128 127 31 20 chr13 47744479 47744833 -72000065 - THE1B LTR MaLR -6 358 1 1542 127 0 0 chr13 47744833 47745069 -71999829 - LTR64 LTR ERVK -322 236 1 1385 182 92 26 chr13 47745582 47746180 -71998718 - LOR1-int LTR ERV1 -1682 4916 2471 714 192 10 54 chr13 47746258 47746461 -71998437 - LOR1-int LTR ERV1 -2869 3729 3536 3225 162 30 54 chr13 47746545 47747666 -71997232 - LOR1-int LTR ERV1 -4279 2479 1220 4022 152 14 1 chr13 47747675 47748385 -71996513 - L1PB4 LINE L1 -7 6149 5431 625 229 0 0 chr13 47748429 47748560 -71996338 - FLAM_C SINE Alu -6 137 7 2931 180 51 16 chr13 47748564 47749325 -71995573 - L1PB4 LINE L1 -743 5403 4654 3914 159 54 31 chr13 47749328 47750258 -71994640 - LTR57-int LTR ERVL -4073 1270 320 496 301 51 47 chr13 47750532 47750788 -71994110 - LOR1-int LTR ERV1 -6135 623 367 3087 125 60 4 chr13 47751195 47751708 -71993190 - LTR64 LTR ERVK -16 542 1 345 306 65 2 chr13 47751942 47752251 -71992647 - L1ME LINE L1 -390 5772 5428 459 296 167 14 chr13 47752498 47752714 -71992184 - MIR SINE MIR 0 262 14 311 299 98 37 chr13 47752773 47752987 -71991911 - L1MDa LINE L1 -4766 1774 1548 384 313 83 17 chr13 47753116 47753356 -71991542 - L1MDa LINE L1 -5353 1177 922 835 273 82 40 chr13 47753546 47754096 -71990802 + MLT1G3 LTR MaLR 1 555 -12 778 267 32 16 chr13 47754506 47754753 -71990145 + L2 LINE L2 1822 2072 -1242 423 0 0 0 chr13 47754782 47754829 -71990069 + (TG)n Simple_repeat Simple_repeat 2 48 0 230 328 114 81 chr13 47755294 47755687 -71989211 - L2 LINE L2 0 3272 2867 2749 111 14 5 chr13 47756172 47756596 -71988302 + L1PB1 LINE L1 5723 6150 -1 2152 169 74 89 chr13 47756718 47757246 -71987652 + MLT2B1 LTR ERVL 1 520 0 347 302 47 7 chr13 47757467 47757623 -71987275 + MIR SINE MIR 31 195 -67 1424 180 48 57 chr13 47758926 47759298 -71985600 - MLT1B LTR MaLR -16 374 6 1396 287 29 22 chr13 47759701 47760004 -71984894 + L2 LINE L2 2860 3168 -145 2056 153 16 19 chr13 47760004 47760370 -71984528 - MER47A DNA MER2_type 0 366 2 1396 287 29 22 chr13 47760370 47760516 -71984382 + L2 LINE L2 3168 3312 -1 442 251 36 72 chr13 47761238 47761393 -71983505 + MIR SINE MIR 19 169 -63 452 145 24 0 chr13 47762219 47762302 -71982596 + Charlie1 DNA MER1_type 2661 2745 -16 325 194 15 0 chr13 47762315 47762382 -71982516 + Charlie1 DNA MER1_type 2694 2761 0 365 239 202 0 chr13 47763148 47763257 -71981641 + MIR SINE MIR 47 177 -85 190 400 42 0 chr13 47763430 47763525 -71981373 - L2 LINE L2 -23 3249 3151 1142 141 137 0 chr13 47763584 47763825 -71981073 - L1MC1 LINE L1 0 6333 6060 2070 176 37 60 chr13 47764089 47764601 -71980297 + MLT1D LTR MaLR 6 505 0 490 321 66 10 chr13 47765038 47765234 -71979664 - MIR SINE MIR 0 262 56 295 270 103 32 chr13 47765286 47765412 -71979486 + MIR SINE MIR 20 154 -108 706 339 13 0 chr13 47765429 47765665 -71979233 + MIR SINE MIR 7 245 -17 206 204 0 23 chr13 47767382 47767426 -71977472 - MIR SINE MIR -50 212 170 5310 84 20 8 chr13 47767541 47768280 -71976618 + L1PA11 LINE L1 5420 6167 -7 529 315 62 28 chr13 47768358 47768611 -71976287 - MIR SINE MIR 0 262 3 319 310 49 15 chr13 47768890 47769033 -71975865 + MIR SINE MIR 16 163 -45 298 333 77 39 chr13 47769427 47769634 -71975264 + MIR SINE MIR 42 256 -6 354 383 62 29 chr13 47770649 47771152 -71973746 - L2 LINE L2 -212 3060 2542 4798 199 42 13 chr13 47772547 47774011 -71970887 - L1MD2 LINE L1 -10 6349 4848 3920 169 60 40 chr13 47774019 47774058 -71970840 + L1MB3 LINE L1 5173 5210 -973 2047 158 92 5 chr13 47774058 47774450 -71970448 + MSTB LTR MaLR 1 426 0 3920 169 60 40 chr13 47774450 47774993 -71969905 + L1MB3 LINE L1 5210 5781 -402 1621 171 25 109 chr13 47774993 47775425 -71969473 + MSTD LTR MaLR 1 396 0 3920 169 60 40 chr13 47775425 47775835 -71969063 + L1MB3 LINE L1 5781 6181 -2 1579 221 16 14 chr13 47775830 47776259 -71968639 - L1MD2 LINE L1 -1286 4860 4431 * 572 330 11 5 chr13 47777933 47778118 -71966780 - MIR SINE MIR -21 241 56 2144 110 3 0 chr13 47778129 47778420 -71966478 - AluSg SINE Alu -12 298 7 305 255 59 20 chr13 47779835 47779937 -71964961 + L2 LINE L2 3164 3269 -44 325 262 76 131 chr13 47780006 47780243 -71964655 + MIR SINE MIR 8 231 -31 848 284 45 0 chr13 47781158 47781380 -71963518 - MIR SINE MIR 0 262 31 362 321 67 36 chr13 47781815 47782127 -71962771 + L2 LINE L2 2956 3272 0 1516 157 82 37 chr13 47782320 47782614 -71962284 + AluJo SINE Alu 1 307 -5 456 65 16 0 chr13 47782745 47782807 -71962091 + MADE1 DNA Mariner 18 80 0 254 261 33 22 chr13 47783203 47783295 -71961603 - L1MC4 LINE L1 -16 8026 7934 2394 87 3 0 chr13 47783428 47783728 -71961170 - AluSx SINE Alu -11 301 1 353 323 125 22 chr13 47783957 47784189 -71960709 - L1MC/D LINE L1 -2055 5577 5322 1110 193 97 75 chr13 47784206 47784661 -71960237 - L1MC4 LINE L1 -16 8026 7562 621 274 163 16 chr13 47784664 47785239 -71959659 - L1MC/D LINE L1 -660 5330 4674 398 288 12 62 chr13 47785270 47785410 -71959488 - L1ME LINE L1 -519 5643 5498 2718 98 31 17 chr13 47785410 47785769 -71959129 + THE1B LTR MaLR 1 364 0 13022 82 9 1 chr13 47785769 47787336 -71957562 + THE1B-int LTR MaLR 1 1580 0 2571 122 28 17 chr13 47787336 47787696 -71957202 + THE1B LTR MaLR 1 364 0 398 288 12 62 chr13 47787696 47787713 -71957185 - L1ME LINE L1 -661 5501 5492 185 299 138 0 chr13 47787976 47788063 -71956835 + MIR SINE MIR 164 262 0 376 385 115 7 chr13 47788066 47788362 -71956536 + L2 LINE L2 2403 2730 -584 541 264 115 0 chr13 47788582 47788764 -71956134 + MIR SINE MIR 8 210 -52 278 286 66 33 chr13 47788915 47789006 -71955892 + MLT1K LTR MaLR 104 197 -391 1218 249 72 34 chr13 47789413 47789858 -71955040 + MLT1C LTR MaLR 6 467 0 545 258 8 0 chr13 47790088 47790216 -71954682 - MER94 DNA DNA -1 133 5 2509 124 113 10 chr13 47790283 47790671 -71954227 - MSTA LTR MaLR 0 428 1 679 228 84 18 chr13 47791158 47791325 -71953573 + MER5B DNA MER1_type 1 178 0 2548 103 48 50 chr13 47791427 47791826 -71953072 + MER48 LTR ERV1 1 398 0 350 314 176 41 chr13 47792915 47793233 -71951665 + L2 LINE L2 2904 3264 -8 246 296 0 28 chr13 47793411 47793482 -71951416 - MIR3 SINE MIR -125 83 15 501 303 68 0 chr13 47793971 47794133 -71950765 - MIR SINE MIR -21 241 69 433 304 144 29 chr13 47794197 47794440 -71950458 + L1MC/D LINE L1 5536 5806 -2002 335 307 11 0 chr13 47794765 47794853 -71950045 - LTR67 LTR ERVL -377 180 92 4965 216 39 79 chr13 47795182 47795549 -71949349 - L1MC/D LINE L1 -1746 4224 3844 697 101 0 0 chr13 47795549 47795638 -71949260 + 5S rRNA rRNA 1 89 -32 4965 216 39 79 chr13 47795638 47796889 -71948009 - L1MC/D LINE L1 -2126 3844 2587 3389 252 76 41 chr13 47796878 47797362 -71947536 - L1M1 LINE L1 -3627 2343 1877 * 4870 82 8 2 chr13 47797362 47797958 -71946940 - MER4A LTR ERV1 0 600 1 3389 252 76 41 chr13 47797958 47798240 -71946658 - L1M1 LINE L1 -4093 1877 1606 2820 138 7 9 chr13 47798240 47798675 -71946223 - MER57B LTR ERV1 0 434 1 3389 252 76 41 chr13 47798675 47799344 -71945554 - L1M1 LINE L1 -4364 1606 845 180 0 0 0 chr13 47799344 47799364 -71945534 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3389 252 76 41 chr13 47799364 47799842 -71945056 - L1M1 LINE L1 -5125 845 385 571 288 77 55 chr13 47800087 47800413 -71944485 - L1M1 LINE L1 -5558 333 1 2324 175 89 69 chr13 47801136 47801644 -71943254 + MLT2B1 LTR ERVL 3 520 0 459 0 0 0 chr13 47803232 47803283 -71941615 + (TG)n Simple_repeat Simple_repeat 2 52 0 266 279 15 0 chr13 47803283 47803351 -71941547 + L2 LINE L2 3193 3261 -11 250 229 186 42 chr13 47803526 47803644 -71941254 + MIR SINE MIR 120 254 -8 202 276 86 95 chr13 47803897 47804002 -71940896 + L2 LINE L2 3169 3272 0 329 285 65 83 chr13 47804108 47804440 -71940458 + L2 LINE L2 2716 3063 -209 800 265 78 37 chr13 47804440 47804680 -71940218 - L2 LINE L2 0 3313 3055 1393 263 87 11 chr13 47804680 47805060 -71939838 - MLT1I LTR MaLR 0 409 1 800 265 78 37 chr13 47805060 47805140 -71939758 - L2 LINE L2 -258 3055 2980 1481 232 44 25 chr13 47805144 47805618 -71939280 + L2 LINE L2 2413 2895 -419 263 325 39 13 chr13 47805627 47805704 -71939194 - L2 LINE L2 -1 3312 3234 303 93 0 0 chr13 47805860 47805903 -71938995 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr13 47805902 47805922 -71938976 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 * 258 32 0 0 chr13 47807151 47807182 -71937716 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 208 303 148 21 chr13 47808178 47808320 -71936578 + MIR SINE MIR 47 206 -56 511 304 51 33 chr13 47808661 47808875 -71936023 - LTR67 LTR ERVL -3 554 337 23 0 0 0 chr13 47809157 47809180 -71935718 + AT_rich Low_complexity Low_complexity 1 23 0 4789 154 11 62 chr13 47809203 47810187 -71934711 - L1MA7 LINE L1 -4 6287 5354 1665 309 68 22 chr13 47810412 47811182 -71933716 - ERVL LTR ERVL -501 5263 4459 5731 215 49 33 chr13 47811232 47812647 -71932251 - L1PBa LINE L1 -3916 2947 2390 1812 146 71 0 chr13 47812647 47812914 -71931984 + AluSx SINE Alu 13 298 -14 5731 215 49 33 chr13 47812914 47814963 -71929935 - L1PBa LINE L1 -4473 2390 376 269 255 49 49 chr13 47814963 47815065 -71929833 - ERVL LTR ERVL -1583 4181 4080 287 238 95 12 chr13 47815111 47815195 -71929703 - ERVL LTR ERVL -2346 3418 3328 1158 318 75 28 chr13 47815345 47816020 -71928878 - ERVL LTR ERVL -1912 3084 2413 2355 139 24 9 chr13 47816044 47816383 -71928515 + MER2 DNA MER2_type 1 344 0 742 200 74 7 chr13 47816435 47816601 -71928297 + MLT1B LTR MaLR 1 176 -198 450 0 0 0 chr13 47816601 47816651 -71928247 + (TC)n Simple_repeat Simple_repeat 1 50 0 742 200 74 7 chr13 47816651 47816662 -71928236 + MLT1B LTR MaLR 176 185 -189 343 336 0 0 chr13 47817155 47817274 -71927624 - ERVL LTR ERVL -5134 630 512 206 188 16 31 chr13 47817304 47817368 -71927530 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 393 213 0 0 chr13 47817488 47817563 -71927335 - LTR67 LTR ERVL -2 555 481 1012 59 0 0 chr13 47817575 47817694 -71927204 + AluY SINE Alu 1 119 -192 865 260 100 82 chr13 47817707 47818196 -71926702 - LTR67 LTR ERVL -58 499 2 2408 35 6 35 chr13 47818246 47818559 -71926339 + AluY SINE Alu 1 304 -7 205 190 52 35 chr13 47818727 47818785 -71926113 - MER91 DNA MER1_type 0 140 82 203 366 9 9 chr13 47818812 47818924 -71925974 + MIR SINE MIR 12 123 -139 1084 223 48 0 chr13 47819097 47819303 -71925595 + MER20 DNA MER1_type 4 219 0 1047 208 14 27 chr13 47819582 47819803 -71925095 + MER20 DNA MER1_type 1 218 -1 193 230 81 68 chr13 47820237 47820311 -71924587 - L2 LINE L2 -10 3262 3188 1160 161 12 33 chr13 47820603 47820633 -71924265 - MSTB LTR MaLR -1 425 396 1435 150 26 9 chr13 47820633 47820859 -71924039 + MER30 DNA MER1_type 1 230 0 1160 161 12 33 chr13 47820859 47821161 -71923737 - MSTB LTR MaLR -30 396 1 223 172 52 35 chr13 47821358 47821416 -71923482 + MER91 DNA MER1_type 1 59 -81 392 324 7 7 chr13 47821443 47821579 -71923319 + MIR SINE MIR 12 147 -115 394 274 119 32 chr13 47823199 47823444 -71921454 + MIR SINE MIR 1 262 0 2069 110 4 7 chr13 47823454 47823762 -71921136 - AluSx SINE Alu 0 310 4 1392 132 19 0 chr13 47823763 47823968 -71920930 + Tigger1 DNA MER2_type 364 572 -1846 721 203 0 0 chr13 47823968 47824086 -71920812 - FLAM_C SINE Alu -15 118 1 651 313 110 26 chr13 47824169 47824479 -71920419 - L2 LINE L2 0 3272 2937 2283 118 0 0 chr13 47824747 47825053 -71919845 + AluSx SINE Alu 1 306 -6 618 247 96 60 chr13 47825579 47825830 -71919068 - MIR SINE MIR -1 261 2 324 298 85 0 chr13 47825922 47826063 -71918835 + L1ME LINE L1 5672 5824 -297 1254 296 69 21 chr13 47826068 47826534 -71918364 + HAL1 LINE L1 1 488 -2019 1982 268 137 0 chr13 47826588 47827244 -71917654 + L2 LINE L2 1956 2701 -613 509 292 120 0 chr13 47827239 47827448 -71917450 + L2 LINE L2 2837 3070 -243 * 1895 129 37 0 chr13 47827456 47827754 -71917144 - AluSq SINE Alu 0 308 1 257 280 0 0 chr13 47827829 47827879 -71917019 + MIR SINE MIR 204 253 -9 441 287 32 6 chr13 47827950 47828107 -71916791 + HAL1 LINE L1 605 765 -1742 507 184 11 0 chr13 47828123 47828210 -71916688 + MER81 DNA DNA 26 113 -1 3369 255 164 33 chr13 47828211 47829743 -71915155 + HAL1 LINE L1 761 2494 -13 2732 26 0 6 chr13 47829743 47830071 -71914827 - AluYa5 SINE Alu 0 326 1 484 236 179 61 chr13 47830088 47830187 -71914711 - L1ME3A LINE L1 -5 6165 6079 2196 122 0 0 chr13 47830187 47830481 -71914417 - AluSx SINE Alu -18 294 1 484 236 179 61 chr13 47830481 47830610 -71914288 - L1ME3A LINE L1 -91 6079 5910 205 222 25 12 chr13 47830614 47830681 -71914217 + (TAA)n Simple_repeat Simple_repeat 2 72 -11 361 121 60 96 chr13 47830681 47830764 -71914134 - MADE1 DNA Mariner 0 80 1 205 222 25 12 chr13 47830764 47830777 -71914121 + (TAA)n Simple_repeat Simple_repeat 72 83 0 501 262 87 4 chr13 47830790 47830981 -71913917 - L1ME3A LINE L1 -272 5898 5727 530 323 113 50 chr13 47831117 47831516 -71913382 - L2 LINE L2 0 3272 2849 255 296 68 0 chr13 47831573 47831661 -71913237 - L2 LINE L2 -1407 1907 1814 270 0 0 0 chr13 47832062 47832092 -71912806 + (CA)n Simple_repeat Simple_repeat 2 31 0 30 0 0 0 chr13 47832976 47833006 -71911892 + AT_rich Low_complexity Low_complexity 1 30 0 204 308 158 17 chr13 47833127 47833247 -71911651 - L2 LINE L2 -2 3311 3175 236 30 30 0 chr13 47833975 47834008 -71910890 + (TC)n Simple_repeat Simple_repeat 2 35 0 250 343 41 68 chr13 47834345 47834491 -71910407 - L2 LINE L2 -5 3267 3126 183 268 116 71 chr13 47834731 47834929 -71909969 + L2 LINE L2 2375 2581 -733 * 467 220 5 151 chr13 47834905 47835123 -71909775 + L2 LINE L2 3095 3280 -33 237 132 0 0 chr13 47835138 47835176 -71909722 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 374 294 73 45 chr13 47836229 47836406 -71908492 + MIR SINE MIR 25 206 -56 344 302 9 17 chr13 47836695 47836811 -71908087 - L2 LINE L2 -2 3270 3156 1008 275 69 125 chr13 47837053 47837678 -71907220 + L2 LINE L2 1755 2319 -995 1852 156 9 41 chr13 47837678 47837998 -71906900 - AluJb SINE Alu -2 310 1 1008 275 69 125 chr13 47837998 47838246 -71906652 + L2 LINE L2 2319 2579 -735 843 244 79 125 chr13 47838221 47838559 -71906339 + L2 LINE L2 2816 3123 -190 * 2258 97 3 0 chr13 47838559 47838847 -71906051 + AluSx SINE Alu 1 289 -23 843 244 79 125 chr13 47838847 47839029 -71905869 + L2 LINE L2 3123 3312 -1 382 299 25 6 chr13 47839545 47839702 -71905196 - MER117 DNA MER1_type -37 160 1 383 234 175 0 chr13 47840075 47840212 -71904686 + MIR SINE MIR 92 252 -10 203 383 33 17 chr13 47841671 47841791 -71903107 - L3b LINE CR1 -121 1462 1341 1439 196 11 48 chr13 47841980 47842337 -71902561 - L1MD3 LINE L1 -296 7699 7356 1962 168 11 14 chr13 47842479 47842842 -71902056 - MLT1A1 LTR MaLR 0 365 4 39 60 0 0 chr13 47842863 47842930 -71901968 + AT_rich Low_complexity Low_complexity 1 67 0 6124 120 22 1 chr13 47842937 47844028 -71900870 - L1MA4 LINE L1 -27 6273 5157 232 254 0 70 chr13 47844493 47844564 -71900334 + L3 LINE CR1 1508 1573 -4 2220 99 30 0 chr13 47844675 47845052 -71899846 + AluSx SINE Alu 1 386 0 808 216 0 82 chr13 47845129 47845361 -71899537 - MER58C DNA MER1_type -1 214 2 316 253 101 0 chr13 47845365 47845464 -71899434 - MER103 DNA DNA -57 109 1 450 279 180 41 chr13 47845549 47845861 -71899037 + L1ME4a LINE L1 4942 5302 -844 464 319 66 43 chr13 47845869 47846433 -71898465 + L1ME4a LINE L1 5311 5887 -234 1983 144 7 0 chr13 47846441 47846746 -71898152 + AluSp SINE Alu 1 307 -6 950 108 0 0 chr13 47846885 47847005 -71897893 - AluSq/x SINE Alu -193 120 1 254 263 90 32 chr13 47849286 47849442 -71895456 - LTR67 LTR ERVL -36 521 357 550 289 183 34 chr13 47851214 47851629 -71893269 - L2 LINE L2 0 3313 2837 307 275 42 48 chr13 47852182 47852349 -71892549 - L2 LINE L2 -560 2754 2589 1858 154 34 3 chr13 47852817 47853110 -71891788 + AluJb SINE Alu 1 302 -10 212 29 0 59 chr13 47853171 47853205 -71891693 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 715 175 26 0 chr13 47853216 47853330 -71891568 - FLAM_C SINE Alu -26 117 1 2139 114 7 3 chr13 47854072 47854362 -71890536 - AluSc SINE Alu -18 291 1 260 216 108 14 chr13 47854749 47854823 -71890075 + MER57A LTR ERV1 1 81 -353 960 220 103 28 chr13 47855151 47855460 -71889438 + MER57A LTR ERV1 99 403 0 22 35 0 0 chr13 47855485 47855514 -71889384 + AT_rich Low_complexity Low_complexity 1 29 0 635 340 98 18 chr13 47855564 47855964 -71888934 + L3 LINE CR1 678 1109 -468 2047 145 132 8 chr13 47855978 47856358 -71888540 - MSTA LTR MaLR -1 427 1 8553 144 41 42 chr13 47856358 47857937 -71886961 - MSTA-int LTR MaLR 0 1580 3 1858 143 137 8 chr13 47857942 47858314 -71886584 - MSTA LTR MaLR -3 425 6 368 284 72 49 chr13 47858316 47858705 -71886193 - MLT1J LTR MaLR -4 461 106 338 282 212 46 chr13 47858904 47859163 -71885735 + L3 LINE CR1 1276 1577 0 311 289 151 19 chr13 47859234 47859393 -71885505 - MIR SINE MIR -77 185 6 275 327 87 7 chr13 47860520 47860670 -71884228 + MIR3 SINE MIR 30 191 -17 277 180 155 0 chr13 47860739 47860815 -71884083 - MIR SINE MIR -62 146 82 386 236 129 21 chr13 47860886 47861026 -71883872 - HAL1 LINE L1 -40 2467 2313 722 193 71 21 chr13 47861042 47861280 -71883618 - HAL1 LINE L1 -279 2228 1979 14540 122 27 21 chr13 47861326 47861694 -71883204 + Tigger1 DNA MER2_type 14 378 -2040 2177 116 0 13 chr13 47861694 47861997 -71882901 - AluSx SINE Alu -10 302 4 14540 122 27 21 chr13 47861997 47863459 -71881439 + Tigger1 DNA MER2_type 378 1865 -553 2324 92 13 0 chr13 47863459 47863762 -71881136 + AluY SINE Alu 2 308 -3 14540 122 27 21 chr13 47863762 47864320 -71880578 + Tigger1 DNA MER2_type 1865 2418 0 1534 259 18 11 chr13 47864320 47864764 -71880134 - HAL1 LINE L1 -555 1952 1506 1410 236 40 60 chr13 47865647 47866107 -71878791 - L1ME3A LINE L1 -270 5900 5451 1928 113 53 25 chr13 47866107 47866255 -71878643 - AluSc SINE Alu -18 291 149 2239 98 40 0 chr13 47866255 47866551 -71878347 - AluSq SINE Alu -5 308 1 1928 113 53 25 chr13 47866551 47866685 -71878213 - AluSc SINE Alu -160 149 1 1410 236 40 60 chr13 47866685 47866754 -71878144 - L1ME3A LINE L1 -719 5451 5382 2367 256 61 24 chr13 47866755 47867005 -71877893 - L1ME3A LINE L1 -1329 4817 4578 2069 134 0 7 chr13 47867005 47867311 -71877587 - AluSq SINE Alu -8 305 2 2367 256 61 24 chr13 47867311 47868183 -71876715 - L1ME3A LINE L1 -1568 4578 3653 610 267 112 14 chr13 47868984 47869211 -71875687 - MIR SINE MIR -12 250 5 281 311 73 0 chr13 47869655 47869806 -71875092 + MER103 DNA DNA 4 165 -1 460 319 44 6 chr13 47869941 47870123 -71874775 + L3 LINE CR1 1388 1576 -1 3276 198 48 42 chr13 47870190 47870967 -71873931 + MER21B LTR ERV1 12 792 -71 520 252 156 66 chr13 47871053 47871522 -71873376 - MLT1J LTR MaLR 0 511 1 415 277 60 42 chr13 47872405 47872571 -71872327 + MER5B DNA MER1_type 7 175 -3 404 346 107 4 chr13 47873096 47873330 -71871568 - L3b LINE CR1 -197 1386 1129 446 313 34 56 chr13 47873515 47873694 -71871204 + MIR3 SINE MIR 19 193 -15 659 276 56 28 chr13 47875267 47875481 -71869417 + MIR SINE MIR 17 236 -26 24 0 0 0 chr13 47876814 47876838 -71868060 + AT_rich Low_complexity Low_complexity 1 24 0 403 210 95 123 chr13 47877216 47877459 -71867439 - MER112 DNA MER1_type 0 260 25 1931 123 76 25 chr13 47877529 47877886 -71867012 + THE1C LTR MaLR 1 375 0 320 114 0 0 chr13 47878016 47878071 -71866827 - MLT2D LTR ERVL -2 462 415 480 215 0 0 chr13 47878071 47878178 -71866720 + (TA)n Simple_repeat Simple_repeat 1 107 0 317 87 0 0 chr13 47878256 47878302 -71866596 + MLT2C2 LTR ERVL 417 462 -2 895 173 115 21 chr13 47878374 47878617 -71866281 - MLT2D LTR ERVL -46 368 103 488 140 65 9 chr13 47878709 47878816 -71866082 - MLT2B1 LTR ERVL -407 113 1 452 264 61 7 chr13 47878919 47879067 -71865831 - MER63A DNA MER1_type 0 210 55 980 47 0 16 chr13 47879248 47879377 -71865521 - L1PB3 LINE L1 0 6154 6028 2349 112 0 0 chr13 47879557 47879861 -71865037 + AluSx SINE Alu 1 304 -8 378 130 26 13 chr13 47879868 47879945 -71864953 + L1MC5 LINE L1 7393 7470 -491 503 250 90 7 chr13 47879995 47880139 -71864759 - MER5A DNA MER1_type 0 189 34 2484 121 54 5 chr13 47880191 47880597 -71864301 + MSTA LTR MaLR 3 428 0 480 248 35 25 chr13 47880598 47880796 -71864102 + L1MC5 LINE L1 7711 7910 -51 1992 116 22 0 chr13 47881268 47881571 -71863327 + AluSq SINE Alu 1 309 0 4901 117 30 4 chr13 47881628 47882387 -71862511 + MER4E LTR ERV1 1 779 0 272 328 15 22 chr13 47882531 47882665 -71862233 - MIR3 SINE MIR -9 199 67 395 236 77 93 chr13 47882982 47883116 -71861782 - MIR SINE MIR 0 262 130 2400 88 3 0 chr13 47883116 47883422 -71861476 + AluSp SINE Alu 1 307 -6 395 236 77 93 chr13 47883422 47883469 -71861429 - MIR SINE MIR -132 130 84 330 289 95 74 chr13 47883521 47883603 -71861295 + MER91A DNA MER1_type 1 194 -2 336 306 148 0 chr13 47883603 47883711 -71861187 + MER91A DNA MER1_type 71 194 -2 373 261 193 11 chr13 47883882 47884058 -71860840 + L1MB7 LINE L1 5975 6182 -2 4815 191 42 24 chr13 47884195 47885208 -71859690 + MER45B DNA AcHobo 8 1039 -1 2090 97 3 79 chr13 47885225 47885555 -71859343 + AluSx SINE Alu 1 305 -7 310 265 88 10 chr13 47885574 47885676 -71859222 - MIR SINE MIR -82 126 17 2212 123 10 0 chr13 47885742 47886044 -71858854 + AluSx SINE Alu 1 305 -7 622 240 125 10 chr13 47886855 47887047 -71857851 - MIR SINE MIR 0 262 49 204 264 97 69 chr13 47887205 47887277 -71857621 - MER91A DNA MER1_type 0 196 123 2005 108 0 30 chr13 47887502 47887799 -71857099 + AluSg SINE Alu 1 288 -22 306 73 0 0 chr13 47887799 47887840 -71857058 + (TA)n Simple_repeat Simple_repeat 1 41 0 1996 135 0 3 chr13 47887857 47888145 -71856753 + AluSg SINE Alu 1 287 -23 26 0 0 0 chr13 47888145 47888171 -71856727 + AT_rich Low_complexity Low_complexity 1 26 0 259 130 0 0 chr13 47888175 47888221 -71856677 - LTR66 LTR ERVL -171 439 394 21 0 0 0 chr13 47889700 47889721 -71855177 + AT_rich Low_complexity Low_complexity 1 21 0 421 258 110 31 chr13 47890427 47890590 -71854308 - MIR SINE MIR -6 256 81 684 226 64 10 chr13 47890723 47890927 -71853971 + MER20B DNA MER1_type 569 783 0 1843 118 135 32 chr13 47892646 47892986 -71851912 - THE1C LTR MaLR 0 375 1 23 78 0 0 chr13 47893606 47893657 -71851241 + AT_rich Low_complexity Low_complexity 1 51 0 258 32 0 0 chr13 47893658 47893670 -71851228 + (TG)n Simple_repeat Simple_repeat 1 43 0 258 32 0 0 chr13 47893670 47893701 -71851197 + (TG)n Simple_repeat Simple_repeat 2 32 0 258 286 143 31 chr13 47893995 47894093 -71850805 - L2 LINE L2 -50 3222 3114 214 200 0 0 chr13 47894671 47894711 -71850187 + (TAA)n Simple_repeat Simple_repeat 2 41 0 3873 243 121 35 chr13 47895204 47896636 -71848262 - L2 LINE L2 -184 3129 1558 180 0 0 0 chr13 47896659 47896679 -71848219 + (A)n Simple_repeat Simple_repeat 1 20 0 190 244 24 0 chr13 47896686 47896727 -71848171 - L2 LINE L2 -1764 1550 1509 1803 182 54 6 chr13 47896803 47897138 -71847760 + MLT1A1 LTR MaLR 15 365 0 183 100 0 0 chr13 47897321 47897351 -71847547 + (T)n Simple_repeat Simple_repeat 1 30 0 374 109 0 18 chr13 47897368 47897423 -71847475 - LTR7 LTR ERV1 -8 442 389 873 115 92 14 chr13 47897593 47897751 -71847147 - LTR7 LTR ERV1 -232 218 1 2863 95 16 29 chr13 47897751 47898202 -71846696 - HERVH LTR ERV1 0 7713 7269 * 16332 168 62 46 chr13 47898184 47901970 -71842928 - HERVH LTR ERV1 -2693 5020 1172 1911 157 67 66 chr13 47901957 47902685 -71842213 - HERVH LTR ERV1 -6668 1045 1 * 1424 183 116 74 chr13 47902685 47903117 -71841781 - LTR7 LTR ERV1 0 450 1 209 145 29 29 chr13 47903591 47903660 -71841238 + GA-rich Low_complexity Low_complexity 2 70 0 262 341 30 0 chr13 47903851 47903986 -71840912 + L2 LINE L2 2247 2385 -929 835 203 88 30 chr13 47905400 47905655 -71839243 + L1ME1 LINE L1 5915 6182 -2 196 176 0 0 chr13 47905693 47905727 -71839171 + L2 LINE L2 3230 3263 -9 187 263 100 12 chr13 47907277 47907357 -71837541 - MIR SINE MIR 0 262 176 1736 186 0 3 chr13 47907720 47908005 -71836893 + AluJo SINE Alu 1 284 -28 2147 117 3 3 chr13 47908008 47908306 -71836592 - AluSg SINE Alu -12 298 1 25 65 0 0 chr13 47908308 47908354 -71836544 + AT_rich Low_complexity Low_complexity 1 46 0 806 268 106 11 chr13 47908435 47908812 -71836086 - L1ME4a LINE L1 -2 6119 5707 252 250 0 0 chr13 47908816 47908872 -71836026 - L1ME4a LINE L1 -452 5669 5614 2397 94 0 0 chr13 47908888 47909195 -71835703 + AluSx SINE Alu 1 307 -5 2362 89 0 13 chr13 47909220 47909353 -71835545 + AluSg SINE Alu 1 134 -176 2473 64 3 6 chr13 47909353 47909665 -71835233 + AluY SINE Alu 1 311 0 2362 89 0 13 chr13 47909665 47909834 -71835064 + AluSg SINE Alu 134 299 -11 246 128 0 0 chr13 47910007 47910046 -71834852 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 235 299 92 40 chr13 47910821 47910995 -71833903 - MIR SINE MIR -46 216 34 3228 94 16 16 chr13 47911002 47911436 -71833462 + MER57B LTR ERV1 1 434 0 624 276 15 67 chr13 47911783 47912051 -71832847 + MIR SINE MIR 1 254 -8 189 132 0 0 chr13 47912052 47912090 -71832808 + (ATG)n Simple_repeat Simple_repeat 2 39 0 719 235 125 14 chr13 47912586 47912821 -71832077 + MIR SINE MIR 2 261 -1 544 240 114 7 chr13 47913521 47913674 -71831224 + MER69 DNA AcHobo 1 2524 -2 280 207 108 54 chr13 47913709 47913820 -71831078 - MER117 DNA MER1_type -79 118 2 1401 206 74 50 chr13 47913936 47914353 -71830545 + MER31B LTR ERV1 1 427 -39 2354 138 33 33 chr13 47914499 47914862 -71830036 + THE1B LTR MaLR 2 364 0 2046 125 4 0 chr13 47915357 47915636 -71829262 + AluSq SINE Alu 1 280 -33 369 0 0 0 chr13 47915636 47915677 -71829221 + (CA)n Simple_repeat Simple_repeat 1 41 0 551 281 34 0 chr13 47916431 47916577 -71828321 + MLT1J1 LTR MaLR 191 341 -105 232 130 0 43 chr13 47917107 47917153 -71827745 - L2 LINE L2 -5 3308 3265 1172 282 68 18 chr13 47917442 47917822 -71827076 - MER115 DNA AcHobo 0 693 295 324 304 20 0 chr13 47917931 47918033 -71826865 - MER115 DNA AcHobo -589 104 1 330 258 60 26 chr13 47918075 47918143 -71826755 - MER103 DNA DNA -10 156 92 1790 193 73 28 chr13 47918143 47918501 -71826397 - MLT1A2 LTR MaLR 0 374 1 330 258 60 26 chr13 47918501 47918583 -71826315 - MER103 DNA DNA -74 92 1 24 32 0 0 chr13 47919853 47919884 -71825014 + AT_rich Low_complexity Low_complexity 1 31 0 805 144 133 16 chr13 47920515 47920788 -71824110 + MLT1E1 LTR MaLR 1 353 -301 367 274 11 21 chr13 47922275 47922370 -71822528 + L2 LINE L2 3149 3242 -30 320 297 79 39 chr13 47922546 47922677 -71822221 - MIR SINE MIR -63 145 30 287 359 114 15 chr13 47923811 47923883 -71821015 + MIR SINE MIR 2 65 -197 2342 112 0 3 chr13 47923883 47924196 -71820702 - AluSx SINE Alu 0 312 1 287 359 114 15 chr13 47924196 47924254 -71820644 + MIR SINE MIR 65 145 -117 2201 222 38 23 chr13 47924403 47924931 -71819967 - MLT1F LTR MaLR -6 536 1 483 285 85 18 chr13 47924933 47925098 -71819800 + MIR SINE MIR 87 262 0 718 310 56 40 chr13 47925605 47925928 -71818970 - L2 LINE L2 -1 3312 2985 1371 193 0 12 chr13 47926489 47926748 -71818150 + AluJb SINE Alu 40 295 -17 455 262 8 33 chr13 47926758 47926880 -71818018 - MIR3 SINE MIR -21 187 69 376 336 8 8 chr13 47927046 47927174 -71817724 - L2 LINE L2 -973 2341 2214 451 236 66 38 chr13 47927175 47927321 -71817577 - MIR SINE MIR -58 150 20 351 0 0 0 chr13 47928166 47928205 -71816693 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 1910 132 22 0 chr13 47928205 47928477 -71816421 - AluSg SINE Alu -32 278 1 281 270 114 93 chr13 47928520 47928887 -71816011 + L2 LINE L2 1967 2341 -973 260 318 184 20 chr13 47929362 47929682 -71815216 + L2 LINE L2 2473 2739 -533 1458 196 43 4 chr13 47929682 47929958 -71814940 - AluJo SINE Alu -21 291 5 260 318 184 20 chr13 47929958 47930115 -71814783 + L2 LINE L2 2739 3055 -217 1987 167 23 3 chr13 47930198 47930545 -71814353 - MER47A DNA MER2_type -12 354 1 319 307 21 107 chr13 47930575 47930715 -71814183 + L2 LINE L2 3133 3260 -12 250 314 116 8 chr13 47931438 47931556 -71813342 + MIR SINE MIR 23 151 -65 720 265 115 99 chr13 47932048 47932724 -71812174 + HAL1 LINE L1 1117 1803 -704 1256 281 51 8 chr13 47933020 47933411 -71811487 - LTR16A1 LTR ERVL 0 457 50 407 263 11 56 chr13 47933744 47933923 -71810975 + HAL1b LINE L1 746 916 -432 566 289 30 42 chr13 47934041 47934304 -71810594 + HAL1 LINE L1 2246 2505 -2 186 262 90 57 chr13 47934306 47934428 -71810470 + MIR SINE MIR 137 262 0 274 338 50 88 chr13 47934900 47935060 -71809838 + L2 LINE L2 3109 3262 -10 393 102 0 0 chr13 47935060 47935119 -71809779 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 311 231 33 33 chr13 47935328 47935419 -71809479 + MIR SINE MIR 22 112 -150 275 275 150 25 chr13 47935505 47935625 -71809273 + MIR SINE MIR 128 262 0 214 320 200 0 chr13 47935661 47935761 -71809137 - L2 LINE L2 -21 3251 3132 303 313 95 0 chr13 47938395 47938501 -71806397 + MIR SINE MIR 34 148 -66 787 193 47 6 chr13 47939289 47939460 -71805438 - MER5B DNA MER1_type 0 178 1 21 36 0 0 chr13 47939962 47939990 -71804908 + AT_rich Low_complexity Low_complexity 1 28 0 397 296 255 8 chr13 47940786 47941053 -71803845 + L2 LINE L2 2940 3272 0 220 299 11 11 chr13 47941117 47941204 -71803694 + A-rich Low_complexity Low_complexity 4 90 0 207 0 0 0 chr13 47941993 47942016 -71802882 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr13 47942151 47942174 -71802724 + AT_rich Low_complexity Low_complexity 1 23 0 777 252 64 33 chr13 47942244 47942573 -71802325 + MLT1J1 LTR MaLR 86 424 -22 258 169 13 52 chr13 47942761 47942838 -71802060 - L1ME LINE L1 -237 5884 5811 201 306 0 48 chr13 47942936 47942998 -71801900 + MER5A DNA MER1_type 1 59 -130 259 294 88 0 chr13 47943280 47943416 -71801482 - MLT1J LTR MaLR -355 156 9 235 310 187 19 chr13 47943453 47943608 -71801290 + MIR SINE MIR 20 200 -62 993 229 52 4 chr13 47943744 47943975 -71800923 + MIR SINE MIR 15 256 -6 2876 224 84 13 chr13 47944970 47945829 -71799069 - L1MC4a LINE L1 -1 7807 6888 2274 97 7 3 chr13 47947008 47947307 -71797591 - AluSx SINE Alu -12 300 1 233 273 26 13 chr13 47947905 47947982 -71796916 + L1MDa LINE L1 5 82 -6458 290 250 0 0 chr13 47948280 47948348 -71796550 - MIR SINE MIR 0 262 195 680 232 0 0 chr13 47948365 47948490 -71796408 + FLAM_A SINE Alu 1 125 -8 2519 68 0 0 chr13 47948495 47948790 -71796108 + AluSg SINE Alu 1 295 -15 978 236 14 0 chr13 47948830 47949046 -71795852 - MER58A DNA MER1_type 0 224 6 443 256 157 0 chr13 47949055 47949176 -71795722 - MIR SINE MIR -121 141 2 2466 163 63 6 chr13 47949317 47949795 -71795103 - MLT1D LTR MaLR 0 505 1 612 309 132 9 chr13 47950159 47950486 -71794412 - LTR16B LTR ERVL -3 461 95 919 244 141 42 chr13 47951952 47952406 -71792492 - LTR33A LTR ERVL 0 523 25 2429 181 82 0 chr13 47952464 47952940 -71791958 + MLT2B2 LTR ERVL 1 515 0 1729 180 10 14 chr13 47953141 47953430 -71791468 - AluJo SINE Alu -24 288 1 26 0 0 0 chr13 47953701 47953727 -71791171 + AT_rich Low_complexity Low_complexity 1 26 0 527 125 0 0 chr13 47954640 47954720 -71790178 - MADE1 DNA Mariner 0 80 1 326 280 54 0 chr13 47954816 47954909 -71789989 - MIR SINE MIR -129 133 36 354 316 38 30 chr13 47955417 47955550 -71789348 + MER91A DNA MER1_type 40 173 -23 24 0 0 0 chr13 47955745 47955769 -71789129 + AT_rich Low_complexity Low_complexity 1 24 0 182 345 0 0 chr13 47956054 47956109 -71788789 - L2 LINE L2 -17 3255 3201 2359 67 10 13 chr13 47956199 47956499 -71788399 - AluY SINE Alu -12 299 1 1485 249 267 21 chr13 47957278 47958416 -71786482 - L2 LINE L2 -159 3154 1527 292 277 88 7 chr13 47958491 47958639 -71786259 - L1MC/D LINE L1 -682 5480 5318 1968 172 51 109 chr13 47958988 47959576 -71785322 + MLT2B3 LTR ERVL 1 554 0 505 275 95 5 chr13 47959609 47959831 -71785067 + L1MEc LINE L1 1579 1820 -4576 2394 62 13 0 chr13 47959993 47960297 -71784601 - AluY SINE Alu -3 308 1 444 215 79 34 chr13 47960387 47960564 -71784334 - LTR16B LTR ERVL -2 462 278 331 320 39 56 chr13 47960580 47960814 -71784084 - L2 LINE L2 -340 2974 2745 202 287 172 0 chr13 47960834 47960921 -71783977 - L2 LINE L2 -3 3269 3168 597 175 83 0 chr13 47961094 47961214 -71783684 + MER96 DNA MER1_type? 1 130 -45 1626 194 20 13 chr13 47961215 47961514 -71783384 - AluJb SINE Alu -11 301 1 3244 158 46 7 chr13 47961523 47961978 -71782920 - L1MB7 LINE L1 -2 6182 5647 579 74 0 12 chr13 47961978 47962059 -71782839 + MADE1 DNA Mariner 1 80 0 3244 158 46 7 chr13 47962059 47962340 -71782558 - L1MB7 LINE L1 -537 5647 5379 1987 222 132 34 chr13 47963866 47964573 -71780325 + LTR50 LTR ERVL 19 794 -1 5910 155 16 5 chr13 47964919 47966986 -71777912 - L1PB1 LINE L1 -1 6150 4063 421 346 67 31 chr13 47967070 47967324 -71777574 + ERVL LTR ERVL 352 614 -5150 285 396 10 0 chr13 47967450 47967657 -71777241 + ERVL LTR ERVL 775 983 -4781 2255 123 0 0 chr13 47967673 47967973 -71776925 - AluJb SINE Alu -10 302 3 831 300 14 18 chr13 47968067 47968347 -71776551 + ERVL LTR ERVL 2921 3199 -2565 243 291 12 0 chr13 47968371 47968457 -71776441 + L1M4 LINE L1 3681 3767 -2379 375 252 56 9 chr13 47968473 47968580 -71776318 + L2 LINE L2 3196 3307 -6 296 233 31 83 chr13 47968583 47968776 -71776122 + L1M4 LINE L1 3791 3973 -2173 384 243 107 23 chr13 47968782 47968959 -71775939 + L1M4 LINE L1 4362 4553 -1593 189 0 0 0 chr13 47968959 47968980 -71775918 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 439 214 207 21 chr13 47969390 47969535 -71775363 - MIR SINE MIR 0 262 91 30 27 0 0 chr13 47969549 47969586 -71775312 + AT_rich Low_complexity Low_complexity 1 37 0 1166 264 48 50 chr13 47969620 47970083 -71774815 - MLT1C LTR MaLR 0 467 6 248 259 25 37 chr13 47970087 47970168 -71774730 - MIR SINE MIR -180 82 3 206 163 0 23 chr13 47970696 47970739 -71774159 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1760 173 7 20 chr13 47971437 47971738 -71773160 - AluJb SINE Alu -15 297 1 973 205 31 31 chr13 47972398 47972622 -71772276 + MER58A DNA MER1_type 1 224 0 336 293 81 77 chr13 47972807 47973104 -71771794 - L2 LINE L2 -843 2471 2174 25 0 0 0 chr13 47973489 47973514 -71771384 + AT_rich Low_complexity Low_complexity 1 25 0 2866 162 48 3 chr13 47973568 47974135 -71770763 - L1MD3 LINE L1 0 7995 7404 470 153 71 0 chr13 47974135 47974220 -71770678 - MLT1F1 LTR MaLR -442 125 35 771 226 15 0 chr13 47974231 47974430 -71770468 - L1MC3 LINE L1 -702 7083 6882 213 121 0 0 chr13 47974445 47974478 -71770420 + (TG)n Simple_repeat Simple_repeat 2 34 0 1561 226 101 58 chr13 47975316 47975478 -71769420 + L1MEc LINE L1 1724 1878 -4337 1628 169 14 32 chr13 47975478 47975762 -71769136 + AluJb SINE Alu 2 280 -32 1561 226 101 58 chr13 47975762 47976411 -71768487 + L1MEc LINE L1 1878 2498 -3717 2077 142 0 6 chr13 47976411 47976722 -71768176 + AluJb SINE Alu 1 309 -3 1561 226 101 58 chr13 47976722 47976768 -71768130 + L1MEc LINE L1 2498 2541 -3674 2052 146 36 11 chr13 47976768 47977125 -71767773 - MER47A DNA MER2_type 0 366 1 1561 226 101 58 chr13 47977125 47977172 -71767726 + L1MEc LINE L1 2541 2633 -3582 1166 200 92 19 chr13 47977185 47977569 -71767329 + L1M4 LINE L1 5011 5421 -743 389 225 12 50 chr13 47977593 47977753 -71767145 + L1MA10 LINE L1 6180 6333 -1 269 272 43 22 chr13 47978318 47978410 -71766488 - MIR SINE MIR -68 194 101 419 265 71 0 chr13 47978811 47978909 -71765989 - L2 LINE L2 0 3272 3168 28 29 0 0 chr13 47978949 47978984 -71765914 + AT_rich Low_complexity Low_complexity 1 35 0 371 319 48 59 chr13 47979254 47979527 -71765371 - L2 LINE L2 -556 2758 2489 217 210 16 16 chr13 47981228 47981290 -71763608 + T-rich Low_complexity Low_complexity 4 65 0 2297 97 0 19 chr13 47981586 47981896 -71763002 - AluSg SINE Alu -6 304 1 207 0 0 0 chr13 47983143 47983166 -71761732 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr13 47983301 47983324 -71761574 + AT_rich Low_complexity Low_complexity 1 23 0 764 255 64 33 chr13 47983394 47983723 -71761175 + MLT1J1 LTR MaLR 86 424 -22 258 169 13 52 chr13 47983911 47983988 -71760910 - L1ME LINE L1 -237 5884 5811 201 306 0 48 chr13 47984086 47984148 -71760750 + MER5A DNA MER1_type 1 59 -130 2011 234 106 14 chr13 47984924 47985591 -71759307 - L1MC4a LINE L1 -1 7807 7079 234 190 69 0 chr13 47986722 47986780 -71758118 + MER116 DNA Mariner 18 79 -1 842 84 0 0 chr13 47986880 47986987 -71757911 + U6 snRNA snRNA 1 107 0 2054 117 13 3 chr13 47986987 47987304 -71757594 + L1P LINE L1 2354 2673 -3473 1606 173 22 35 chr13 47987529 47987841 -71757057 + AluJo SINE Alu 1 308 -4 2002 259 113 4 chr13 47987882 47988578 -71756320 + L1MEc LINE L1 409 1180 -5216 487 236 180 48 chr13 47988582 47988727 -71756171 + L1MEc LINE L1 1269 1394 -5002 2360 95 0 0 chr13 47988727 47989022 -71755876 - AluSc SINE Alu -14 295 1 487 236 180 48 chr13 47989022 47989249 -71755649 + L1MEc LINE L1 1394 1690 -4706 261 83 0 0 chr13 47989456 47989492 -71755406 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 521 329 134 11 chr13 47990253 47990573 -71754325 - LTR16A LTR ERVL -64 386 32 2291 112 0 13 chr13 47990653 47990965 -71753933 - AluSx SINE Alu -2 310 3 694 279 95 52 chr13 47992526 47992936 -71751962 + MLT1J LTR MaLR 1 526 -89 27 0 0 0 chr13 47992988 47993015 -71751883 + AT_rich Low_complexity Low_complexity 1 27 0 268 167 45 0 chr13 47993038 47993104 -71751794 + CT-rich Low_complexity Low_complexity 2 70 0 280 265 75 20 chr13 47993462 47993662 -71751236 + L1ME4a LINE L1 5754 5964 -157 791 258 107 9 chr13 47994025 47994258 -71750640 + MLT1H1 LTR MaLR 246 501 -54 2479 43 26 0 chr13 47994514 47994816 -71750082 + AluY SINE Alu 1 310 -1 2100 99 0 0 chr13 47996723 47996995 -71747903 + AluSx SINE Alu 1 272 -40 358 105 0 0 chr13 47997603 47997660 -71747238 + Alu SINE Alu 242 298 -3 361 234 16 73 chr13 47997868 47997992 -71746906 + LTR33A LTR ERVL 405 521 -2 379 288 59 33 chr13 47998180 47998333 -71746565 - MIR SINE MIR -71 191 35 2262 189 33 29 chr13 47998333 47998815 -71746083 + MER31A LTR ERV1 2 485 0 2277 93 0 0 chr13 47999356 47999645 -71745253 - AluSg SINE Alu -16 294 6 2035 149 0 0 chr13 47999920 48000221 -71744677 - AluSx SINE Alu -10 302 2 22 35 0 0 chr13 48000739 48000768 -71744130 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 48000934 48000958 -71743940 + AT_rich Low_complexity Low_complexity 1 24 0 379 341 81 17 chr13 48001649 48001822 -71743076 + MER5A DNA MER1_type 5 188 -1 2397 97 7 0 chr13 48001998 48002307 -71742591 - AluSp SINE Alu -2 311 1 512 250 138 40 chr13 48002711 48002935 -71741963 - MIR SINE MIR -13 249 4 204 296 30 91 chr13 48003131 48003265 -71741633 + L2 LINE L2 1720 1840 -1474 2025 188 31 74 chr13 48003265 48003807 -71741091 - LTR40a LTR ERVL 0 519 1 204 296 30 91 chr13 48003807 48003871 -71741027 + L2 LINE L2 1840 1906 -1408 1390 314 131 51 chr13 48003927 48005162 -71739736 - L2 LINE L2 -6 3266 1931 184 261 62 46 chr13 48005166 48005231 -71739667 - MIR SINE MIR -118 144 79 295 270 20 20 chr13 48005492 48005592 -71739306 + MER5B DNA MER1_type 43 142 -36 191 103 26 0 chr13 48007194 48007233 -71737665 + T-rich Low_complexity Low_complexity 2 41 0 863 194 37 46 chr13 48008276 48008492 -71736406 - MER58C DNA MER1_type 0 215 2 241 319 78 44 chr13 48009781 48009939 -71734959 + MIR SINE MIR 23 183 -79 281 269 13 87 chr13 48011360 48011509 -71733389 + MIR SINE MIR 75 212 -50 186 373 67 67 chr13 48011584 48011734 -71733164 - L2 LINE L2 0 3272 3123 23 0 0 0 chr13 48011735 48011758 -71733140 + AT_rich Low_complexity Low_complexity 1 23 0 1035 231 9 5 chr13 48011935 48012156 -71732742 - MER58A DNA MER1_type -2 222 1 372 329 13 20 chr13 48012211 48012360 -71732538 - MIR SINE MIR 0 262 115 333 324 140 16 chr13 48012561 48013067 -71731831 + L1M4 LINE L1 4274 4842 -1304 2386 84 3 0 chr13 48013344 48013652 -71731246 - AluSc SINE Alu 0 309 1 292 258 86 12 chr13 48013779 48013942 -71730956 + L1MC4a LINE L1 5199 5373 -773 404 326 130 33 chr13 48013972 48014303 -71730595 + L1MC4a LINE L1 5542 5907 -255 349 253 63 0 chr13 48014599 48014694 -71730204 - MER94 DNA DNA -6 128 28 235 271 12 35 chr13 48014701 48014786 -71730112 - L2 LINE L2 -1407 1907 1825 2408 84 0 7 chr13 48015058 48015367 -71729531 - AluSg SINE Alu -3 307 1 873 166 40 0 chr13 48015715 48015866 -71729032 - MER47A DNA MER2_type -209 157 1 1259 200 92 19 chr13 48015926 48016311 -71728587 + L1M4 LINE L1 5011 5422 -743 714 213 0 7 chr13 48016335 48016490 -71728408 + L1MA10 LINE L1 6180 6333 -1 367 38 19 293 chr13 48016513 48016619 -71728279 + MADE1 DNA Mariner 1 77 -3 806 220 18 6 chr13 48017008 48017176 -71727722 + MER5A DNA MER1_type 15 184 -5 1141 200 86 40 chr13 48018017 48018245 -71726653 + L1MC5 LINE L1 7501 7756 -205 2284 88 3 3 chr13 48018245 48018542 -71726356 + AluSg SINE Alu 1 297 -13 1141 200 86 40 chr13 48018542 48018708 -71726190 + L1MC5 LINE L1 7756 7913 -48 648 143 20 0 chr13 48018856 48018954 -71725944 - FLAM_C SINE Alu -34 109 10 21 36 0 0 chr13 48018969 48018997 -71725901 + AT_rich Low_complexity Low_complexity 1 28 0 1885 172 21 0 chr13 48020091 48020428 -71724470 - MER2 DNA MER2_type 0 344 1 2159 119 0 3 chr13 48020528 48020830 -71724068 + AluSq SINE Alu 1 301 -12 1362 225 35 24 chr13 48021167 48021536 -71723362 + MLT1A2 LTR MaLR 1 373 -1 3130 197 7 34 chr13 48021539 48022031 -71722867 + MLT1A2-int LTR MaLR 3 474 -1261 2153 127 43 3 chr13 48022031 48022378 -71722520 + MER46B DNA MER2_type 1 236 0 3130 197 7 34 chr13 48022378 48022561 -71722337 + MLT1A2-int LTR MaLR 474 660 -1075 230 207 0 52 chr13 48022623 48022681 -71722217 + MLT1A2-int LTR MaLR 829 883 -488 400 277 0 0 chr13 48022711 48022805 -71722093 + MLT-int LTR MaLR 696 789 -946 * 2220 202 84 55 chr13 48022790 48023359 -71721539 + MLT1A2-int LTR MaLR 1150 1735 0 1403 204 23 67 chr13 48023362 48023750 -71721148 + MLT1A2 LTR MaLR 4 374 0 6189 194 26 12 chr13 48023751 48024705 -71720193 - L1 LINE L1 -912 5234 4294 228 35 0 0 chr13 48024705 48024734 -71720164 + (TG)n Simple_repeat Simple_repeat 2 30 0 6189 194 26 12 chr13 48024734 48024819 -71720079 - L1 LINE L1 -1852 4294 4212 7238 96 17 18 chr13 48024819 48025887 -71719011 + MER11C LTR ERVK 1 1067 -4 6189 194 26 12 chr13 48025887 48026176 -71718722 - L1 LINE L1 -1934 4212 3887 1179 251 42 26 chr13 48026200 48026583 -71718315 - L1ME3A LINE L1 -14 6156 5768 418 231 109 30 chr13 48026638 48026809 -71718089 - L1ME3A LINE L1 -536 5626 5471 2071 136 3 0 chr13 48026819 48027113 -71717785 - AluSx SINE Alu -17 295 1 351 277 142 36 chr13 48027114 48027446 -71717452 - L1ME3A LINE L1 -776 5370 5004 311 188 47 47 chr13 48027492 48027577 -71717321 - L1MC4 LINE L1 -8 8034 7950 302 245 113 60 chr13 48028160 48028311 -71716587 + MIR SINE MIR 94 252 -10 3751 147 86 15 chr13 48029022 48029757 -71715141 - L1MC2 LINE L1 -13 6331 5545 21 0 0 0 chr13 48030099 48030120 -71714778 + AT_rich Low_complexity Low_complexity 1 21 0 2376 236 30 20 chr13 48030134 48030740 -71714158 - MER74B LTR ERVL -10 612 1 343 256 62 67 chr13 48030780 48030975 -71713923 - L1ME3A LINE L1 -15 6653 6460 445 273 54 41 chr13 48031041 48031283 -71713615 - L1ME3A LINE L1 -220 6448 6204 329 201 24 110 chr13 48031323 48031420 -71713478 - L1ME3A LINE L1 -874 5770 5691 2282 98 0 3 chr13 48031420 48031717 -71713181 - AluSx SINE Alu -15 297 2 329 201 24 110 chr13 48031717 48031783 -71713115 - L1ME3A LINE L1 -953 5691 5621 1060 201 0 6 chr13 48031809 48031988 -71712910 + AluJb SINE Alu 113 290 -22 802 260 93 52 chr13 48032053 48032306 -71712592 - L1ME3A LINE L1 -1103 5541 5300 2065 74 8 0 chr13 48032306 48032562 -71712336 - AluY SINE Alu -19 292 35 802 260 93 52 chr13 48032562 48032733 -71712165 - L1ME3A LINE L1 -1344 5300 5137 201 74 0 0 chr13 48032733 48032760 -71712138 + (CA)n Simple_repeat Simple_repeat 2 28 0 802 260 93 52 chr13 48032760 48032988 -71711910 - L1ME3A LINE L1 -1507 5137 4852 315 0 0 0 chr13 48032988 48033023 -71711875 + (TG)n Simple_repeat Simple_repeat 2 36 0 802 260 93 52 chr13 48033023 48033098 -71711800 - L1ME3A LINE L1 -1792 4852 4782 1611 191 11 7 chr13 48033216 48033498 -71711400 + AluJb SINE Alu 1 283 -29 602 14 0 0 chr13 48033567 48033638 -71711260 - L1PA3 LINE L1 -8 6147 6077 369 263 12 23 chr13 48033638 48033809 -71711089 + (TATATG)n Simple_repeat Simple_repeat 3 171 0 29897 33 17 3 chr13 48033809 48039811 -71705087 - L1PA3 LINE L1 -34 6121 2 360 284 83 43 chr13 48039815 48040139 -71704759 - L1ME3A LINE L1 -2299 4345 4009 624 250 128 0 chr13 48040602 48040774 -71704124 - MLT1I LTR MaLR -2 407 214 498 296 73 57 chr13 48040858 48041105 -71703793 - MIR SINE MIR -1 261 11 2237 241 28 31 chr13 48041371 48041977 -71702921 - L1ME3A LINE L1 -5934 608 5 21 36 0 0 chr13 48043152 48043180 -71701718 + AT_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr13 48043617 48043655 -71701243 + AT_rich Low_complexity Low_complexity 1 38 0 1110 168 61 4 chr13 48044099 48044379 -71700519 + L1 LINE L1 3163 3458 -2688 38 258 0 0 chr13 48044784 48044873 -71700025 + AT_rich Low_complexity Low_complexity 1 89 0 4315 174 25 14 chr13 48045172 48046078 -71698820 + L1 LINE L1 3163 4078 -2068 310 309 189 24 chr13 48046997 48047330 -71697568 + L1MC/D LINE L1 5417 5804 -366 1697 144 0 4 chr13 48047740 48048012 -71696886 - AluJo SINE Alu 0 318 48 325 308 119 13 chr13 48048297 48048456 -71696442 - MIR3 SINE MIR -2 206 31 789 234 66 50 chr13 48048721 48049188 -71695710 + L1MB8 LINE L1 1966 2424 -3958 2023 149 0 10 chr13 48049188 48049483 -71695415 + AluSx SINE Alu 4 295 -17 789 234 66 50 chr13 48049483 48049521 -71695377 + L1MB8 LINE L1 2424 2460 -3922 1409 174 76 14 chr13 48049521 48049796 -71695102 - AluJo SINE Alu -20 292 1 789 234 66 50 chr13 48049796 48050230 -71694668 + L1MB8 LINE L1 2460 2991 -3391 1151 191 15 5 chr13 48050237 48050441 -71694457 - AluJo SINE Alu -20 292 87 7724 206 67 36 chr13 48050441 48050943 -71693955 + L1MB8 LINE L1 2986 3471 -2949 228 135 0 0 chr13 48050943 48050980 -71693918 + tRNA-Gly-GGA tRNA tRNA 3 39 -36 7724 206 67 36 chr13 48050980 48052362 -71692536 + L1MB8 LINE L1 3471 5032 -1388 2047 134 17 3 chr13 48052362 48052654 -71692244 + AluSx SINE Alu 3 298 -14 7724 206 67 36 chr13 48052654 48053798 -71691100 + L1MB8 LINE L1 5032 6140 -280 1818 29 0 0 chr13 48053800 48054006 -71690892 + AluY SINE Alu 88 293 -18 515 206 21 14 chr13 48054017 48054158 -71690740 + L1MB8 LINE L1 6267 6408 -6 23 33 0 0 chr13 48054174 48054204 -71690694 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr13 48055329 48055367 -71689531 + AT_rich Low_complexity Low_complexity 1 38 0 365 298 0 19 chr13 48057272 48057376 -71687522 + L2 LINE L2 3171 3272 0 1047 201 35 15 chr13 48057858 48058057 -71686841 - MER3 DNA MER1_type -6 203 1 451 167 0 0 chr13 48058824 48058902 -71685996 - MIR SINE MIR -21 241 164 459 65 0 117 chr13 48059182 48059258 -71685640 + MLT1B LTR MaLR 24 90 -300 1552 155 44 25 chr13 48059258 48059965 -71684933 - LTR1B LTR ERV1 0 826 1 1248 157 144 0 chr13 48059983 48060212 -71684686 + MLT1B LTR MaLR 127 388 -2 2263 102 3 0 chr13 48061300 48061604 -71683294 - AluSq SINE Alu -2 311 7 392 287 19 9 chr13 48062941 48063049 -71681849 + L2 LINE L2 3164 3272 0 584 290 94 45 chr13 48063086 48063125 -71681773 - L2 LINE L2 -1 3312 3276 2286 109 0 6 chr13 48063125 48063438 -71681460 + AluSq SINE Alu 1 311 -2 584 290 94 45 chr13 48063438 48063729 -71681169 - L2 LINE L2 -37 3276 2966 1565 181 31 21 chr13 48064090 48064378 -71680520 + AluJb SINE Alu 1 291 -21 904 188 0 0 chr13 48064538 48064682 -71680216 + FRAM SINE Alu 12 155 -21 4354 169 42 36 chr13 48064789 48065131 -71679767 - L1MB5 LINE L1 -8 6166 5828 2389 91 3 0 chr13 48065131 48065438 -71679460 - AluSx SINE Alu -4 308 1 4354 169 42 36 chr13 48065438 48066044 -71678854 - L1MB5 LINE L1 -346 5828 5219 2135 126 0 7 chr13 48066044 48066354 -71678544 + AluSx SINE Alu 1 308 -4 4354 169 42 36 chr13 48066354 48066703 -71678195 - L1MB5 LINE L1 -955 5219 4874 345 301 58 0 chr13 48066706 48066809 -71678089 - L1MC4a LINE L1 -942 6866 6758 1173 189 15 64 chr13 48067047 48067306 -71677592 - MLT1B LTR MaLR -5 385 140 1544 186 29 26 chr13 48067306 48067743 -71677155 + LTR2B LTR ERV1 1 490 0 894 133 0 21 chr13 48067743 48067886 -71677012 - MLT1B LTR MaLR -247 143 4 237 267 35 0 chr13 48068187 48068273 -71676625 + L1MEd LINE L1 4 92 -6027 1125 285 99 62 chr13 48068290 48069476 -71675422 + L1MEd LINE L1 143 1481 -1009 264 260 0 0 chr13 48069483 48069533 -71675365 + AluJ/monomer SINE Alu 1 50 -252 1286 151 15 5 chr13 48069663 48069869 -71675029 - AluJb SINE Alu -104 208 1 3588 108 17 17 chr13 48069869 48070461 -71674437 - MER4B LTR ERV1 -21 758 1 1255 160 14 5 chr13 48070461 48070674 -71674224 + AluJo SINE Alu 90 304 -8 340 319 98 39 chr13 48070675 48070929 -71673969 + L1M4c LINE L1 1528 1796 -4588 284 79 0 0 chr13 48071220 48071258 -71673640 - MER4E LTR ERV1 -99 667 630 4095 166 53 25 chr13 48071545 48072405 -71672493 + MER4D LTR ERV1 1 593 -17 1006 186 26 0 chr13 48072409 48072602 -71672296 + L1PB1 LINE L1 3 200 -6663 9709 115 113 6 chr13 48072602 48074225 -71670673 + L1PB1 LINE L1 634 2429 -4434 12643 178 28 21 chr13 48074325 48075149 -71669749 + L1PB1 LINE L1 3172 3989 -2878 2168 125 0 0 chr13 48075149 48075454 -71669444 + AluSx SINE Alu 8 312 0 12643 178 28 21 chr13 48075454 48078305 -71666593 + L1PB1 LINE L1 3989 6867 0 1938 154 10 0 chr13 48079709 48080007 -71664891 + AluSx SINE Alu 1 301 -11 410 47 16 109 chr13 48080011 48080139 -71664759 + (GGAAA)n Simple_repeat Simple_repeat 3 118 0 2330 109 0 0 chr13 48080470 48080772 -71664126 - AluSg SINE Alu -8 302 1 236 299 69 50 chr13 48081602 48081901 -71662997 + L1M4c LINE L1 2794 3103 -3279 1730 169 3 39 chr13 48081901 48082209 -71662689 + AluJb SINE Alu 5 301 -11 236 299 69 50 chr13 48082209 48082270 -71662628 + L1M4c LINE L1 3103 3161 -3221 1131 135 22 44 chr13 48082435 48082664 -71662234 + L1PB1 LINE L1 5926 6149 -2 399 191 12 0 chr13 48082808 48082892 -71662006 - MER46B DNA MER2_type -5 231 147 212 143 24 0 chr13 48082901 48082943 -71661955 + (TA)n Simple_repeat Simple_repeat 2 44 0 320 225 56 11 chr13 48082943 48083032 -71661866 - L1MC4 LINE L1 -1338 6704 6612 211 93 47 0 chr13 48083032 48083075 -71661823 + (TA)n Simple_repeat Simple_repeat 1 45 0 1469 127 94 22 chr13 48083080 48083347 -71661551 - MER46B DNA MER2_type -75 161 1 673 154 48 0 chr13 48083643 48083767 -71661131 + MER33 DNA MER1_type 1 121 -97 1251 120 0 0 chr13 48083770 48083970 -71660928 + L1MA4 LINE L1 4132 4331 -1815 894 122 0 0 chr13 48083970 48084085 -71660813 + FLAM_C SINE Alu 1 115 -28 24 0 0 0 chr13 48084087 48084111 -71660787 + AT_rich Low_complexity Low_complexity 1 24 0 696 168 34 0 chr13 48084111 48084260 -71660638 + L1MA4 LINE L1 4316 4469 -1677 * 5782 134 30 68 chr13 48084250 48084778 -71660120 + L1MA4 LINE L1 4742 5289 -1011 855 154 8 0 chr13 48084778 48084908 -71659990 + FLAM_C SINE Alu 2 132 -1 5782 134 30 68 chr13 48084908 48085558 -71659340 + L1MA4 LINE L1 5289 5832 -468 1796 171 3 7 chr13 48085558 48085867 -71659031 + AluJo SINE Alu 5 312 0 5782 134 30 68 chr13 48085867 48086286 -71658612 + L1MA4 LINE L1 5832 6265 -35 402 150 218 0 chr13 48086302 48086449 -71658449 + MER33 DNA MER1_type 111 289 -35 327 314 51 80 chr13 48087015 48087326 -71657572 - L2 LINE L2 -229 3043 2738 352 237 72 10 chr13 48087377 48087474 -71657424 - L1M4 LINE L1 -2992 3154 3052 3853 119 3 18 chr13 48087552 48088163 -71656735 - L1PA13 LINE L1 -3 6160 5559 28 0 0 0 chr13 48088223 48088251 -71656647 + AT_rich Low_complexity Low_complexity 1 28 0 1440 153 12 97 chr13 48088251 48088571 -71656327 - AluJb SINE Alu -9 293 1 255 191 16 63 chr13 48088783 48088846 -71656052 + Charlie4 DNA MER1_type 1 60 -1901 845 86 86 0 chr13 48088973 48089101 -71655797 + MER85 DNA T2_type 1 139 0 21 36 0 0 chr13 48089438 48089466 -71655432 + AT_rich Low_complexity Low_complexity 1 28 0 1124 71 13 0 chr13 48089775 48089929 -71654969 + L1PA7 LINE L1 5999 6154 0 464 297 87 35 chr13 48089948 48090177 -71654721 + MIR SINE MIR 20 260 -2 266 271 73 10 chr13 48090287 48090383 -71654515 + MARNA DNA Mariner 157 258 -328 405 289 60 27 chr13 48091033 48091182 -71653716 - L2 LINE L2 -8 3305 3152 257 247 136 25 chr13 48091314 48091395 -71653503 + MLT1H LTR MaLR 179 268 -287 548 196 80 22 chr13 48091474 48091612 -71653286 + MLT1H LTR MaLR 400 545 -4 2400 76 0 0 chr13 48092275 48092564 -71652334 - AluSg SINE Alu -21 289 1 295 313 9 0 chr13 48092585 48092700 -71652198 - L1M4 LINE L1 -813 5333 5218 2623 109 46 2 chr13 48092814 48093228 -71651670 + LTR23 LTR ERV1 1 432 -5 518 377 27 54 chr13 48093719 48094197 -71650701 - L2 LINE L2 0 3272 2808 392 202 70 9 chr13 48094297 48094411 -71650487 - L1MC4 LINE L1 -3 8039 7919 670 256 107 11 chr13 48094443 48094705 -71650193 - L1MC4 LINE L1 -656 7386 7100 542 196 0 0 chr13 48094706 48094798 -71650100 + AluJ/FLAM SINE Alu 3 94 -218 556 71 0 44 chr13 48094798 48094911 -71649987 + (GGAGA)n Simple_repeat Simple_repeat 3 110 0 24 0 0 0 chr13 48095945 48095969 -71648929 + AT_rich Low_complexity Low_complexity 1 24 0 183 279 23 0 chr13 48096925 48096968 -71647930 - L2 LINE L2 -12 3260 3217 590 244 58 13 chr13 48097068 48097224 -71647674 - MIR SINE MIR -18 244 82 414 261 39 61 chr13 48097867 48098047 -71646851 + L1ME4a LINE L1 5628 5803 -318 266 309 48 0 chr13 48098157 48098283 -71646615 + L1ME4a LINE L1 5979 6110 -11 207 0 0 0 chr13 48099255 48099278 -71645620 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 808 268 30 5 chr13 48099365 48099563 -71645335 - MER20 DNA MER1_type -13 206 4 640 220 39 114 chr13 48099593 48099703 -71645195 + MIR SINE MIR 20 137 -125 2322 99 0 0 chr13 48099703 48099996 -71644902 - AluSx SINE Alu -19 293 1 640 220 39 114 chr13 48099996 48100140 -71644758 + MIR SINE MIR 137 255 -7 22 80 0 0 chr13 48100263 48100313 -71644585 + AT_rich Low_complexity Low_complexity 1 50 0 1733 171 18 0 chr13 48100453 48100733 -71644165 + AluJo SINE Alu 7 291 -21 296 208 113 66 chr13 48100761 48100867 -71644031 + MER94 DNA DNA 4 114 -20 1485 103 0 0 chr13 48101032 48101246 -71643652 + L1PA8 LINE L1 5945 6158 -14 413 335 71 71 chr13 48102681 48103063 -71641835 - L2 LINE L2 -19 3253 2872 227 238 24 36 chr13 48103091 48103175 -71641723 + L1MEd LINE L1 36 118 -6001 1517 183 76 0 chr13 48103286 48103548 -71641350 - AluJo SINE Alu -30 282 1 226 309 15 29 chr13 48104416 48104484 -71640414 + L2 LINE L2 3201 3267 -5 190 268 24 0 chr13 48104880 48104921 -71639977 + MIR SINE MIR 45 86 -176 398 318 64 88 chr13 48105320 48105554 -71639344 + L3 LINE CR1 561 788 -789 2213 108 0 3 chr13 48105554 48105850 -71639048 + AluSx SINE Alu 1 295 -17 398 318 64 88 chr13 48105850 48105911 -71638987 + L3 LINE CR1 788 849 -728 356 301 165 37 chr13 48106805 48107077 -71637821 + L3 LINE CR1 916 1222 -355 526 115 0 23 chr13 48107087 48107174 -71637724 - AluSc SINE Alu -224 85 1 205 359 185 0 chr13 48107174 48107369 -71637529 + L3 LINE CR1 1345 1575 -2 412 274 65 91 chr13 48109211 48109328 -71635570 + L3 LINE CR1 1321 1440 -137 2215 121 3 0 chr13 48109328 48109633 -71635265 - AluSx SINE Alu -6 306 1 412 274 65 91 chr13 48109633 48109778 -71635120 + L3 LINE CR1 1440 1576 -1 22 35 0 0 chr13 48110658 48110687 -71634211 + AT_rich Low_complexity Low_complexity 1 29 0 260 128 21 21 chr13 48111642 48111689 -71633209 + L2 LINE L2 3267 3313 0 558 196 8 145 chr13 48111943 48112178 -71632720 + L2 LINE L2 1882 2084 -1230 833 140 0 29 chr13 48112180 48112316 -71632582 - FLAM_C SINE Alu 0 133 2 1788 137 29 7 chr13 48112363 48112669 -71632229 + L1MB3 LINE L1 5871 6183 0 1751 219 93 32 chr13 48112744 48113332 -71631566 + MLT1E3 LTR MaLR 1 624 0 403 258 70 103 chr13 48113332 48113592 -71631306 - MLT1J LTR MaLR -65 446 194 2148 107 27 3 chr13 48113592 48113892 -71631006 + AluSg SINE Alu 1 307 -3 2865 157 44 32 chr13 48113942 48114171 -71630727 + L1M4c LINE L1 338 563 -5821 1674 144 50 22 chr13 48114171 48114448 -71630450 + AluJo SINE Alu 1 285 -27 2865 157 44 32 chr13 48114448 48114803 -71630095 + L1M4c LINE L1 563 929 -5455 289 143 0 0 chr13 48114830 48114879 -71630019 + L1M4c LINE L1 910 958 -5426 7871 60 14 0 chr13 48114879 48115854 -71629044 - HERVL LTR ERVL -1775 3879 2891 1428 88 49 0 chr13 48115854 48116058 -71628840 - MLT2A1 LTR ERVL -230 214 1 200 200 60 0 chr13 48116533 48116583 -71628315 + MER5B DNA MER1_type 27 79 -99 835 276 60 4 chr13 48116857 48117089 -71627809 - MIR SINE MIR -1 261 17 306 305 34 42 chr13 48117994 48118112 -71626786 - L2 LINE L2 -15 3298 3182 29 28 0 0 chr13 48118575 48118611 -71626287 + AT_rich Low_complexity Low_complexity 1 36 0 718 92 0 0 chr13 48118843 48118941 -71625957 + HY3 scRNA scRNA 2 99 -2 21 0 0 0 chr13 48119966 48119987 -71624911 + AT_rich Low_complexity Low_complexity 1 21 0 319 300 97 74 chr13 48120171 48120605 -71624293 - L2 LINE L2 -101 3171 2726 575 193 179 47 chr13 48123127 48123401 -71621497 - MER114 LTR ERV -338 310 1 254 268 14 0 chr13 48123745 48123816 -71621082 - MER94 DNA DNA -62 72 1 198 0 0 0 chr13 48125246 48125268 -71619630 + (T)n Simple_repeat Simple_repeat 1 22 0 595 143 0 0 chr13 48125482 48125573 -71619325 - FLAM_C SINE Alu -36 107 17 973 238 82 0 chr13 48126470 48126701 -71618197 - MIR SINE MIR -11 251 2 776 311 227 27 chr13 48126863 48127681 -71617217 - L2 LINE L2 -497 2817 1836 2163 69 7 31 chr13 48127696 48128017 -71616881 + AluY SINE Alu 1 314 0 596 280 85 30 chr13 48128170 48128570 -71616328 + L1ME LINE L1 4905 5326 -820 637 247 116 26 chr13 48128585 48128855 -71616043 + L1ME LINE L1 5414 5715 -455 957 218 30 26 chr13 48128889 48129123 -71615775 + L2 LINE L2 2152 2386 -928 799 196 54 34 chr13 48129124 48129328 -71615570 - L1ME LINE L1 -436 5734 5527 1182 252 102 62 chr13 48129329 48129765 -71615133 + L2 LINE L2 2687 3160 -153 1595 202 14 7 chr13 48129765 48130062 -71614836 - AluJb SINE Alu -13 299 1 1182 252 102 62 chr13 48130062 48130222 -71614676 + L2 LINE L2 3160 3312 -1 180 0 0 0 chr13 48130225 48130245 -71614653 + (A)n Simple_repeat Simple_repeat 1 20 0 232 248 99 10 chr13 48130288 48130389 -71614509 + L1ME LINE L1 5765 5874 -296 304 327 201 38 chr13 48131404 48132192 -71612706 - L2 LINE L2 -2297 1017 102 371 253 272 0 chr13 48132494 48132656 -71612242 + MIR SINE MIR 57 262 0 205 280 182 7 chr13 48132683 48132826 -71612072 - MIR SINE MIR -1 261 94 22 35 0 0 chr13 48133157 48133186 -71611712 + AT_rich Low_complexity Low_complexity 1 29 0 2415 87 0 0 chr13 48134895 48135195 -71609703 + AluSx SINE Alu 1 300 -12 585 218 223 32 chr13 48136097 48136285 -71608613 + MIR SINE MIR 14 237 -25 22 0 0 0 chr13 48136296 48136318 -71608580 + AT_rich Low_complexity Low_complexity 1 22 0 487 292 3 43 chr13 48136474 48136732 -71608166 + CT-rich Low_complexity Low_complexity 1 247 0 233 261 130 72 chr13 48137720 48137858 -71607040 + MER5A DNA MER1_type 7 152 -37 287 308 41 82 chr13 48139004 48139150 -71605748 + MIR3 SINE MIR 6 145 -63 224 330 204 23 chr13 48139173 48139437 -71605461 + L2 LINE L2 1773 2084 -1230 215 343 15 0 chr13 48139478 48139545 -71605353 - L2 LINE L2 -19 3253 3186 887 275 191 14 chr13 48139811 48139965 -71604933 - L2 LINE L2 -9 3304 3179 2228 87 31 0 chr13 48139965 48140252 -71604646 + AluSx SINE Alu 2 297 -15 887 275 191 14 chr13 48140252 48140522 -71604376 - L2 LINE L2 -134 3179 2805 324 292 0 0 chr13 48140526 48140598 -71604300 + L2 LINE L2 3188 3259 -13 1793 164 59 0 chr13 48140990 48141313 -71603585 - MER2 DNA MER2_type -2 342 1 29805 98 13 20 chr13 48141633 48147949 -71596949 + L1PA7 LINE L1 128 6469 0 371 282 97 32 chr13 48149112 48149236 -71595662 - L2 LINE L2 -2 3311 3180 965 181 10 10 chr13 48149726 48149925 -71594973 - L1MB3 LINE L1 0 6183 5985 853 247 43 0 chr13 48150071 48150257 -71594641 + MIR SINE MIR 10 203 -59 2415 237 228 52 chr13 48150421 48151334 -71593564 + L2 LINE L2 1413 2556 -758 2329 104 0 0 chr13 48151334 48151631 -71593267 - AluSg SINE Alu -13 297 1 2415 237 228 52 chr13 48151631 48151821 -71593077 + L2 LINE L2 2556 2711 -603 589 245 51 51 chr13 48151828 48152024 -71592874 - MER20 DNA MER1_type 0 219 24 677 300 32 62 chr13 48152029 48152509 -71592389 + L2 LINE L2 2714 3177 -136 252 364 20 33 chr13 48152996 48153147 -71591751 + LTR67 LTR ERVL 94 242 -315 2186 115 10 0 chr13 48154217 48154512 -71590386 - AluSx SINE Alu -9 303 6 256 282 51 0 chr13 48155109 48155187 -71589711 - U4 snRNA snRNA -63 82 1 981 313 163 25 chr13 48155325 48155835 -71589063 + L2 LINE L2 2240 2679 -593 733 224 0 114 chr13 48155835 48156080 -71588818 - MER20 DNA MER1_type -1 218 2 981 313 163 25 chr13 48156080 48156475 -71588423 + L2 LINE L2 2679 3270 -2 478 192 20 10 chr13 48156583 48156682 -71588216 - MER5A DNA MER1_type -86 103 4 22 35 0 0 chr13 48156741 48156770 -71588128 + AT_rich Low_complexity Low_complexity 1 29 0 429 255 189 36 chr13 48157132 48157328 -71587570 - MIR SINE MIR -34 228 3 240 190 139 0 chr13 48157434 48157513 -71587385 - L1MB8 LINE L1 -12 6166 6077 2790 150 87 93 chr13 48157514 48158293 -71586605 - L1MB7 LINE L1 -62 6122 5340 2437 70 0 26 chr13 48158293 48158606 -71586292 - AluSg SINE Alu -5 305 1 2790 150 87 93 chr13 48158606 48158998 -71585900 - L1MB7 LINE L1 -844 5340 4947 21 36 0 0 chr13 48159667 48159695 -71585203 + AT_rich Low_complexity Low_complexity 1 28 0 440 92 77 0 chr13 48160339 48160404 -71584494 - AluJo SINE Alu -19 293 224 1036 178 0 6 chr13 48160404 48160578 -71584320 - AluJo SINE Alu -139 173 1 1950 147 0 0 chr13 48160791 48161083 -71583815 - AluSx SINE Alu -7 305 14 21 57 0 0 chr13 48162162 48162197 -71582701 + AT_rich Low_complexity Low_complexity 1 35 0 247 250 65 21 chr13 48162462 48162644 -71582254 - L2 LINE L2 -2 3311 3032 369 281 187 29 chr13 48163206 48163377 -71581521 - MIR SINE MIR -37 225 28 1560 197 17 14 chr13 48163506 48163800 -71581098 + AluJo SINE Alu 1 295 -17 501 291 90 85 chr13 48164101 48164479 -71580419 - L2 LINE L2 -5 3267 2888 271 287 75 0 chr13 48164560 48164654 -71580244 + MIR SINE MIR 57 157 -105 295 271 86 57 chr13 48165375 48165515 -71579383 + MIR SINE MIR 48 191 -71 2081 133 0 27 chr13 48166318 48166619 -71578279 - AluSx SINE Alu -19 293 1 743 158 0 24 chr13 48166693 48166820 -71578078 + FLAM_C SINE Alu 1 124 -9 34 65 0 0 chr13 48166820 48166882 -71578016 + AT_rich Low_complexity Low_complexity 1 62 0 767 155 65 0 chr13 48166943 48167111 -71577787 + L1MD3 LINE L1 7817 7995 0 197 309 96 11 chr13 48167138 48167232 -71577666 - MIR3 SINE MIR -43 165 64 791 139 0 0 chr13 48167314 48167429 -71577469 + FLAM_C SINE Alu 1 115 -18 483 18 0 0 chr13 48167430 48167486 -71577412 + (CTA)n Simple_repeat Simple_repeat 1 56 0 444 269 110 59 chr13 48168289 48168890 -71576008 - L1MC4a LINE L1 -335 5786 5303 2273 108 0 0 chr13 48169906 48170203 -71574695 + AluSx SINE Alu 1 297 -15 13492 167 41 14 chr13 48171029 48173558 -71571340 - L1M1 LINE L1 -494 6511 4053 794 183 0 0 chr13 48173558 48173689 -71571209 - FLAM_A SINE Alu -2 131 1 13492 167 41 14 chr13 48173689 48174116 -71570782 - L1M1 LINE L1 -2952 4053 3639 2265 93 3 3 chr13 48174116 48174416 -71570482 + AluSc SINE Alu 1 300 -9 13492 167 41 14 chr13 48174416 48175012 -71569886 - L1M1 LINE L1 -3366 3639 2865 6784 63 29 6 chr13 48175027 48175954 -71568944 - L1PA6 LINE L1 0 6154 5225 40657 33 22 2 chr13 48175965 48181987 -71562911 - L1PA2 LINE L1 -3 6152 13 36432 76 9 10 chr13 48181988 48187226 -71557672 - L1PA6 LINE L1 -911 5235 1 10442 167 27 19 chr13 48187226 48188048 -71556850 - L1M1 LINE L1 -3970 2879 2065 1875 109 18 7 chr13 48188048 48188322 -71556576 - AluSq SINE Alu -1 312 36 10442 167 27 19 chr13 48188322 48190261 -71554637 - L1M1 LINE L1 -4784 2065 83 31 68 0 0 chr13 48190801 48190860 -71554038 + AT_rich Low_complexity Low_complexity 1 59 0 1808 158 24 3 chr13 48190881 48191172 -71553726 + AluJo SINE Alu 1 297 -15 29 0 0 0 chr13 48191353 48191382 -71553516 + AT_rich Low_complexity Low_complexity 1 29 0 390 286 143 24 chr13 48191680 48191890 -71553008 - MER112 DNA MER1_type -11 249 15 664 300 58 19 chr13 48192690 48193082 -71551816 - MER20B DNA MER1_type -327 456 12 299 224 103 19 chr13 48193667 48193774 -71551124 + MIR SINE MIR 144 259 -3 382 143 0 16 chr13 48193899 48193962 -71550936 - MER97a DNA MER1_type? -715 179 118 375 286 87 36 chr13 48194030 48194226 -71550672 + MIR SINE MIR 7 212 -50 29 0 0 0 chr13 48194595 48194624 -71550274 + AT_rich Low_complexity Low_complexity 1 29 0 453 236 143 33 chr13 48194790 48194972 -71549926 + L3b LINE CR1 1230 1431 -152 1745 205 85 17 chr13 48195815 48196288 -71548610 - MLT1D LTR MaLR 0 505 1 280 56 0 0 chr13 48196317 48196353 -71548545 + MER30 DNA MER1_type 1 36 -194 531 95 0 0 chr13 48196365 48196439 -71548459 - MADE1 DNA Mariner -5 75 2 * 1032 119 40 0 chr13 48196439 48196588 -71548310 + MER30 DNA MER1_type 76 230 0 450 310 129 25 chr13 48196701 48197182 -71547716 + L1M4 LINE L1 3759 4289 -1857 5578 80 22 1 chr13 48199036 48199797 -71545101 - L1P LINE L1 -1873 4273 3497 2313 63 0 0 chr13 48199797 48200083 -71544815 + L1PA7 LINE L1 5856 6141 -13 1977 150 10 0 chr13 48200256 48200549 -71544349 - AluJo SINE Alu -16 296 1 2287 126 118 65 chr13 48200970 48201478 -71543420 + L1MB7 LINE L1 5631 6165 -19 1642 173 29 0 chr13 48202171 48202478 -71542420 - AluJb SINE Alu 0 315 1 3562 195 69 49 chr13 48202693 48203658 -71541240 - L1MC4 LINE L1 -562 7480 6496 1029 169 0 0 chr13 48204200 48204360 -71540538 + AluSg/x SINE Alu 135 294 -16 839 196 0 20 chr13 48204384 48204532 -71540366 + FRAM SINE Alu 2 146 -30 597 233 42 62 chr13 48204764 48204957 -71539941 + MER5A DNA MER1_type 1 189 0 1667 152 10 35 chr13 48205427 48205740 -71539158 - AluJo SINE Alu 0 306 1 21 0 0 0 chr13 48205780 48205801 -71539097 + AT_rich Low_complexity Low_complexity 1 21 0 183 318 0 0 chr13 48206866 48206910 -71537988 + L2 LINE L2 3255 3298 -15 778 274 225 18 chr13 48207334 48207976 -71536922 - L2 LINE L2 -2 3311 2454 1827 134 98 128 chr13 48207980 48208481 -71536417 - LTR21A LTR ERV1 -19 486 1 222 269 58 29 chr13 48208482 48208586 -71536312 - L2 LINE L2 -866 2448 2342 1239 188 188 0 chr13 48208673 48208934 -71535964 - MLT1F1 LTR MaLR -5 562 253 727 197 7 20 chr13 48208932 48209079 -71535819 - MLT1F1 LTR MaLR -418 149 5 * 340 200 306 12 chr13 48209967 48210037 -71534861 + L1ME4a LINE L1 5689 5737 -384 2321 104 0 0 chr13 48210037 48210336 -71534562 + AluSx SINE Alu 1 299 -13 340 200 306 12 chr13 48210336 48210425 -71534473 + L1ME4a LINE L1 5737 5895 -226 2014 92 3 73 chr13 48212616 48212932 -71531966 - AluSg SINE Alu -16 294 1 2318 87 0 0 chr13 48213348 48213637 -71531261 - AluY SINE Alu -22 289 1 759 208 101 0 chr13 48213828 48213987 -71530911 + FAM SINE Alu 1 175 0 465 296 21 14 chr13 48215379 48215521 -71529377 - MIR SINE MIR -114 148 6 1786 176 0 7 chr13 48215758 48216048 -71528850 - AluJb SINE Alu -24 288 1 1743 160 17 7 chr13 48216725 48217013 -71527885 - AluJb SINE Alu -21 291 1 2122 129 3 7 chr13 48217089 48217398 -71527500 + AluSx SINE Alu 1 308 -4 1875 137 21 7 chr13 48217430 48217715 -71527183 + AluSx SINE Alu 1 289 -23 25 65 0 0 chr13 48218311 48218357 -71526541 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr13 48218931 48218961 -71525937 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr13 48219120 48219166 -71525732 + AT_rich Low_complexity Low_complexity 1 46 0 1883 133 0 61 chr13 48219230 48219560 -71525338 + AluJb SINE Alu 1 310 -2 27 0 0 0 chr13 48219944 48219971 -71524927 + AT_rich Low_complexity Low_complexity 1 27 0 856 144 0 0 chr13 48222101 48222226 -71522672 + FLAM_C SINE Alu 1 125 -18 1682 180 0 3 chr13 48222478 48222773 -71522125 - AluJb SINE Alu -18 294 1 2312 77 10 3 chr13 48222780 48223077 -71521821 - AluSc SINE Alu -10 299 1 194 224 0 41 chr13 48223113 48223162 -71521736 + L2 LINE L2 3150 3196 -76 949 217 136 31 chr13 48226173 48226431 -71518467 + AluJo SINE Alu 2 286 -16 863 248 202 35 chr13 48226918 48227533 -71517365 - L2 LINE L2 0 3313 2611 1227 137 66 22 chr13 48228885 48229111 -71515787 + MER46A DNA MER2_type 1 236 0 245 313 12 38 chr13 48229472 48229552 -71515346 + MIR SINE MIR 71 148 -60 351 296 0 10 chr13 48229591 48229689 -71515209 - MIR SINE MIR -17 245 149 863 78 70 0 chr13 48229792 48229920 -71514978 - MER85 DNA T2_type -2 137 1 217 300 30 10 chr13 48231655 48231755 -71513143 + (TA)n Simple_repeat Simple_repeat 1 102 0 276 135 0 0 chr13 48233541 48233593 -71511305 + L1MB4 LINE L1 6129 6180 0 1631 140 4 4 chr13 48234528 48234764 -71510134 + AluSq SINE Alu 1 236 -77 28 29 0 0 chr13 48234764 48234799 -71510099 + AT_rich Low_complexity Low_complexity 1 35 0 2425 93 0 0 chr13 48236124 48236425 -71508473 + AluSg SINE Alu 1 301 -9 305 311 75 9 chr13 48236899 48237060 -71507838 - MIR SINE MIR -36 172 1 208 267 0 0 chr13 48237136 48237181 -71507717 - L2 LINE L2 -18 3295 3251 1461 177 100 3 chr13 48237447 48237747 -71507151 + L1MB5 LINE L1 5839 6167 -7 748 130 0 8 chr13 48238908 48239031 -71505867 + FLAM_C SINE Alu 1 122 -21 2818 3 0 0 chr13 48239126 48239428 -71505470 - AluYa5 SINE Alu -9 302 1 652 233 138 24 chr13 48239598 48239808 -71505090 + MIR SINE MIR 8 241 -21 561 217 63 68 chr13 48240372 48240579 -71504319 - L2 LINE L2 0 3313 3108 240 164 16 16 chr13 48241195 48241256 -71503642 - L2 LINE L2 -1484 1830 1770 946 267 196 16 chr13 48241256 48242068 -71502830 - L2 LINE L2 -1652 1662 705 233 231 265 0 chr13 48242183 48242330 -71502568 - L2 LINE L2 -2820 494 309 1974 121 19 7 chr13 48242780 48243087 -71501811 + AluJb SINE Alu 2 312 0 252 226 85 19 chr13 48243147 48243253 -71501645 - MIR SINE MIR -123 139 27 27 0 0 0 chr13 48243554 48243581 -71501317 + GC_rich Low_complexity Low_complexity 1 27 0 265 315 45 0 chr13 48246904 48246993 -71497905 + MER91C DNA MER1_type 40 132 -8 2029 157 0 0 chr13 48247954 48248254 -71496644 - AluJo SINE Alu -12 300 1 516 261 78 32 chr13 48248459 48248677 -71496221 - MER112 DNA MER1_type -25 235 8 215 176 0 78 chr13 48248975 48249026 -71495872 - L2 LINE L2 -1 3271 3225 1647 171 16 40 chr13 48249437 48249741 -71495157 - AluJb SINE Alu -15 297 1 870 161 0 0 chr13 48250090 48250239 -71494659 - MER5A DNA MER1_type 0 189 41 1053 205 11 0 chr13 48250239 48250424 -71494474 - Tigger7 DNA MER2_type -545 188 2 2067 143 3 7 chr13 48250515 48250816 -71494082 - AluJb SINE Alu -7 305 6 775 179 92 0 chr13 48251011 48251184 -71493714 - MER5A DNA MER1_type 0 189 1 241 120 220 70 chr13 48251419 48251519 -71493379 + MER53 DNA DNA 1 115 -74 1312 197 4 20 chr13 48251522 48251776 -71493122 + AluJo SINE Alu 1 250 -62 360 188 35 0 chr13 48251797 48251882 -71493016 - MER53 DNA DNA -101 88 1 2060 129 0 3 chr13 48252452 48252747 -71492151 - AluJb SINE Alu -13 299 6 776 195 12 30 chr13 48253418 48253587 -71491311 + FRAM SINE Alu 1 166 0 1923 100 7 54 chr13 48253747 48254026 -71490872 + AluSx SINE Alu 21 286 -26 1815 136 0 11 chr13 48254237 48254510 -71490388 + AluJo SINE Alu 38 307 -5 240 275 38 12 chr13 48254588 48254668 -71490230 + MIR3 SINE MIR 99 180 -28 2086 152 3 0 chr13 48254744 48255046 -71489852 + AluJb SINE Alu 1 303 -9 3205 125 39 34 chr13 48255376 48255600 -71489298 - L1MA8 LINE L1 -6 6285 6064 1642 176 48 7 chr13 48255600 48255890 -71489008 - AluJb SINE Alu -10 302 1 3205 125 39 34 chr13 48255890 48256163 -71488735 - L1MA8 LINE L1 -227 6064 5782 228 67 0 0 chr13 48256163 48256193 -71488705 + (TATG)n Simple_repeat Simple_repeat 2 31 0 3205 125 39 34 chr13 48256193 48256260 -71488638 - L1MA8 LINE L1 -509 5782 5717 1993 97 0 0 chr13 48256812 48257069 -71487829 - AluSc SINE Alu -4 305 49 679 178 16 0 chr13 48258388 48258517 -71486381 + FLAM_C SINE Alu 2 132 -1 350 184 0 11 chr13 48258531 48258618 -71486280 + G-rich Low_complexity Low_complexity 3 88 0 2211 177 100 93 chr13 48259063 48259785 -71485113 - LTR8A LTR ERV1 0 727 1 2064 136 10 10 chr13 48260402 48260697 -71484201 - AluSg SINE Alu -15 295 1 619 190 10 2 chr13 48260871 48261019 -71483879 + L1MC1 LINE L1 5384 5532 -801 3483 103 33 48 chr13 48261019 48261641 -71483257 - MER4B LTR ERV1 0 779 1 4925 112 18 42 chr13 48261641 48262032 -71482866 + L1MC1 LINE L1 5529 5928 -405 2066 151 65 45 chr13 48262032 48262128 -71482770 - LTR47A LTR ERVL 0 452 359 207 0 0 0 chr13 48262128 48262151 -71482747 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2066 151 65 45 chr13 48262151 48262497 -71482401 - LTR47A LTR ERVL -93 359 1 4925 112 18 42 chr13 48262497 48262930 -71481968 + L1MC1 LINE L1 5928 6333 0 418 203 50 66 chr13 48262930 48263112 -71481786 + LTR37B LTR ERV1 216 394 -74 788 192 58 0 chr13 48263121 48263277 -71481621 + MER58B DNA MER1_type 175 339 -2 410 260 10 0 chr13 48263481 48263581 -71481317 + MER5A DNA MER1_type 89 189 0 439 245 0 0 chr13 48263614 48263712 -71481186 - MER5A DNA MER1_type -80 109 12 360 202 36 0 chr13 48263702 48263786 -71481112 + MIR SINE MIR 117 203 -59 * 538 283 85 5 chr13 48263772 48263984 -71480914 + MIR SINE MIR 34 262 0 1749 193 0 7 chr13 48264114 48264419 -71480479 - AluJo SINE Alu -9 303 1 1072 116 35 86 chr13 48264982 48265060 -71479838 + LTR26E LTR ERV1 1 81 -541 2141 103 3 13 chr13 48265060 48265362 -71479536 + AluSx SINE Alu 1 299 -13 2022 148 0 13 chr13 48265371 48265674 -71479224 + AluSx SINE Alu 4 302 -10 1072 116 35 86 chr13 48265674 48265783 -71479115 + LTR26E LTR ERV1 89 188 -434 1820 190 85 124 chr13 48265784 48266559 -71478339 + LTR1B LTR ERV1 1 745 -81 567 240 8 8 chr13 48266638 48266759 -71478139 + LTR28 LTR ERV1 900 1020 0 1977 163 70 0 chr13 48266766 48267121 -71477777 + LTR26E LTR ERV1 195 574 -48 245 254 0 0 chr13 48267494 48267553 -71477345 + CT-rich Low_complexity Low_complexity 4 62 0 400 212 195 0 chr13 48267724 48267841 -71477057 + MLT1I LTR MaLR 233 372 -37 662 102 10 10 chr13 48267841 48267939 -71476959 + MER4A LTR ERV1 1 98 -566 1918 124 9 22 chr13 48267939 48268288 -71476610 + MER4A LTR ERV1 262 664 0 283 184 220 55 chr13 48268568 48268677 -71476221 + L1MEd LINE L1 12 138 -5981 247 250 17 0 chr13 48268816 48268876 -71476022 + (TA)n Simple_repeat Simple_repeat 1 61 0 4055 212 64 31 chr13 48268877 48269449 -71475449 - L1MD2 LINE L1 -19 6340 5788 2377 93 0 3 chr13 48269449 48269751 -71475147 - AluSg SINE Alu -9 301 1 4055 212 64 31 chr13 48269751 48270286 -71474612 - L1MD2 LINE L1 -571 5788 5198 425 237 86 20 chr13 48270427 48270579 -71474319 + L1MEd LINE L1 985 1146 -4973 1179 150 45 20 chr13 48270590 48270790 -71474108 - MER3 DNA MER1_type -4 205 1 253 242 74 21 chr13 48270792 48270887 -71474011 + L1MEd LINE L1 2714 2813 -3316 2074 124 10 7 chr13 48272903 48273194 -71471704 + AluSx SINE Alu 1 292 -20 236 325 0 0 chr13 48273909 48273992 -71470906 - L2 LINE L2 -213 3059 2977 242 29 29 0 chr13 48274482 48274517 -71470381 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2250 89 48 0 chr13 48274579 48274872 -71470026 + AluSc SINE Alu 1 307 -2 839 238 66 16 chr13 48276891 48277135 -71467763 + MIR SINE MIR 7 262 0 216 67 0 0 chr13 48277147 48277177 -71467721 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 750 154 0 0 chr13 48277180 48277297 -71467601 - FLAM_C SINE Alu -25 118 2 637 235 186 5 chr13 48277370 48277591 -71467307 + MIR SINE MIR 2 262 0 2466 84 0 0 chr13 48277856 48278152 -71466746 - AluSg SINE Alu -14 296 1 226 269 104 0 chr13 48278258 48278325 -71466573 + L2 LINE L2 3240 3313 0 2042 203 51 26 chr13 48278397 48278890 -71466008 - MLT1D LTR MaLR 0 505 1 264 351 52 6 chr13 48278897 48279071 -71465827 + L2 LINE L2 711 892 -2422 2099 211 35 18 chr13 48279618 48280073 -71464825 + LTR40c LTR ERVL 1 463 -2 210 378 0 0 chr13 48280138 48280220 -71464678 - MER5B DNA MER1_type -76 102 21 2143 66 37 0 chr13 48280940 48281212 -71463686 + AluY SINE Alu 1 282 -29 231 36 0 0 chr13 48281212 48281240 -71463658 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 321 120 0 0 chr13 48281240 48281290 -71463608 + Alu SINE Alu 251 300 -1 234 306 65 9 chr13 48282311 48282419 -71462479 + MIR SINE MIR 34 147 -61 1673 196 14 0 chr13 48283024 48283320 -71461578 + AluJo SINE Alu 5 304 -8 1112 163 0 0 chr13 48283398 48283564 -71461334 + FRAM SINE Alu 1 165 -11 560 290 125 17 chr13 48283671 48283968 -71460930 - MLT1J2 LTR MaLR 0 450 122 5250 175 111 13 chr13 48285533 48285612 -71459286 + Charlie1a DNA MER1_type 1 71 -2690 1819 171 0 16 chr13 48285612 48285917 -71458981 + AluJb SINE Alu 1 300 -12 5250 175 111 13 chr13 48285917 48285976 -71458922 + Charlie1a DNA MER1_type 71 123 -2638 2314 112 3 0 chr13 48285976 48286279 -71458619 - AluSg SINE Alu -6 304 1 5250 175 111 13 chr13 48286279 48287201 -71457697 + Charlie1a DNA MER1_type 123 1166 -289 1452 196 17 17 chr13 48287891 48288187 -71456711 + AluJo SINE Alu 1 296 -16 848 225 21 38 chr13 48288260 48288496 -71456402 - MIR SINE MIR -30 232 1 1361 128 56 7 chr13 48288978 48289266 -71455632 + Charlie1a DNA MER1_type 1154 1455 0 443 236 86 93 chr13 48290019 48290299 -71454599 - L1ME4a LINE L1 -248 5873 5596 1628 194 56 0 chr13 48290478 48290797 -71454101 - MER58B DNA MER1_type -1 340 4 1705 179 19 32 chr13 48291830 48292138 -71452760 + AluJo SINE Alu 1 304 -8 212 292 44 31 chr13 48292807 48292917 -71451981 + MER5A DNA MER1_type 65 177 -1 1080 189 141 42 chr13 48293611 48293674 -71451224 - MER46C DNA MER2_type -2 336 281 1707 161 24 7 chr13 48293674 48293965 -71450933 - AluJb SINE Alu -12 300 5 1080 189 141 42 chr13 48293965 48294207 -71450691 - MER46C DNA MER2_type -57 281 1 267 210 12 37 chr13 48294226 48294307 -71450591 - MIR SINE MIR 0 262 184 474 128 26 0 chr13 48294583 48294661 -71450237 + AluJ/FLAM SINE Alu 1 80 -232 190 297 10 79 chr13 48294926 48295027 -71449871 - MER5A DNA MER1_type 0 189 96 27 0 0 0 chr13 48295057 48295084 -71449814 + AT_rich Low_complexity Low_complexity 1 27 0 373 273 48 48 chr13 48295916 48296081 -71448817 + L2 LINE L2 3130 3294 -19 1780 98 0 0 chr13 48296099 48296324 -71448574 - AluSg/x SINE Alu -2 308 84 1998 62 4 35 chr13 48297878 48298135 -71446763 + AluY SINE Alu 46 294 -17 277 254 0 70 chr13 48298213 48298284 -71446614 - L2 LINE L2 -3 3269 3204 2084 153 0 0 chr13 48298536 48298837 -71446061 - AluSx SINE Alu -11 301 1 22 35 0 0 chr13 48298846 48298875 -71446023 + AT_rich Low_complexity Low_complexity 1 29 0 193 335 13 83 chr13 48298989 48299080 -71445818 - L2 LINE L2 -480 2834 2738 694 171 269 45 chr13 48299080 48299141 -71445757 - MER33 DNA MER1_type -2261 324 278 342 0 0 0 chr13 48299141 48299179 -71445719 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 630 0 0 0 chr13 48299178 48299248 -71445650 + (GA)n Simple_repeat Simple_repeat 2 71 0 694 171 269 45 chr13 48299179 48299248 -71445650 - MER33 DNA MER1_type -2307 278 226 2073 118 0 0 chr13 48299248 48299518 -71445380 - AluSc SINE Alu -39 270 1 694 171 269 45 chr13 48299518 48299719 -71445179 - MER33 DNA MER1_type -2359 226 2 193 335 13 83 chr13 48299719 48299857 -71445041 - L2 LINE L2 -576 2738 2621 329 243 48 29 chr13 48300206 48300309 -71444589 + L2 LINE L2 3168 3272 -41 551 265 46 26 chr13 48300430 48300634 -71444264 + MIR SINE MIR 3 208 -54 1337 176 5 0 chr13 48300641 48300862 -71444036 + AluJb SINE Alu 1 222 -90 207 0 0 0 chr13 48300886 48300909 -71443989 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 580 179 21 132 chr13 48302321 48302511 -71442387 + MER7A DNA MER2_type 1 167 -179 298 356 69 5 chr13 48302783 48302971 -71441927 - L2 LINE L2 -222 3050 2851 194 273 0 55 chr13 48303471 48303526 -71441372 - L2 LINE L2 -2 3270 3219 2234 78 0 3 chr13 48304257 48304585 -71440313 - AluSx SINE Alu 0 327 1 2110 125 34 6 chr13 48304811 48305139 -71439759 - MER1B DNA MER1_type 0 337 1 1877 88 7 81 chr13 48305233 48305569 -71439329 - AluSq SINE Alu 0 313 1 814 197 56 11 chr13 48305692 48305870 -71439028 - AluSg/x SINE Alu 0 310 125 444 256 118 36 chr13 48305870 48306114 -71438784 - L1MC4 LINE L1 -1 7994 7688 1272 114 116 32 chr13 48306143 48306403 -71438495 + MER1B DNA MER1_type 97 338 -1 26 30 0 0 chr13 48306638 48306671 -71438227 + AT_rich Low_complexity Low_complexity 1 33 0 231 220 0 0 chr13 48307686 48307745 -71437153 - L1ME4a LINE L1 -3 6118 6060 398 288 59 12 chr13 48307792 48307962 -71436936 - L1ME4a LINE L1 -263 5858 5681 189 74 0 0 chr13 48308518 48308545 -71436353 + (ATATG)n Simple_repeat Simple_repeat 4 30 0 2457 78 10 0 chr13 48308618 48308926 -71435972 - AluY SINE Alu 0 311 1 215 319 32 21 chr13 48309038 48309132 -71435766 + MIR SINE MIR 50 144 -64 2240 123 0 16 chr13 48309248 48309565 -71435333 - AluSx SINE Alu 0 312 1 2145 137 0 0 chr13 48310360 48310659 -71434239 + AluSx SINE Alu 1 299 -13 474 75 0 0 chr13 48310918 48310985 -71433913 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 305 295 58 64 chr13 48311060 48311141 -71433757 + L1ME3A LINE L1 5100 5180 -966 1918 176 0 3 chr13 48311141 48311442 -71433456 + AluJb SINE Alu 1 300 -12 305 295 58 64 chr13 48311442 48311533 -71433365 + L1ME3A LINE L1 5180 5271 -875 347 241 45 38 chr13 48311584 48311717 -71433181 + L1ME3A LINE L1 6001 6134 -36 1141 182 29 10 chr13 48311811 48312020 -71432878 - L1MB7 LINE L1 -77 6107 5895 303 195 0 0 chr13 48312486 48312567 -71432331 + L1ME3A LINE L1 5372 5449 -733 2351 104 3 0 chr13 48312572 48312879 -71432019 - AluSx SINE Alu -4 308 1 661 262 65 31 chr13 48312896 48313186 -71431712 + L1ME3A LINE L1 5639 5938 -232 1739 176 3 16 chr13 48313215 48313528 -71431370 + AluJo SINE Alu 1 309 -3 458 257 0 0 chr13 48314048 48314153 -71430745 + L1MA10 LINE L1 6166 6270 -64 700 175 0 8 chr13 48314165 48314285 -71430613 + FLAM_C SINE Alu 13 131 -12 1779 156 19 36 chr13 48314615 48314923 -71429975 - AluJo SINE Alu -9 303 1 513 162 110 37 chr13 48316926 48316977 -71427921 + L2 LINE L2 3168 3214 -99 198 0 0 0 chr13 48316977 48316999 -71427899 + (TG)n Simple_repeat Simple_repeat 2 23 0 513 162 110 37 chr13 48316999 48317083 -71427815 + L2 LINE L2 3214 3313 0 205 367 79 22 chr13 48317052 48317191 -71427707 - L2 LINE L2 -7 3265 3119 * 2013 135 0 47 chr13 48317207 48317525 -71427373 + AluSx SINE Alu 1 303 -9 511 233 120 0 chr13 48317526 48317676 -71427222 + MER5A DNA MER1_type 20 187 -2 216 0 0 0 chr13 48318041 48318065 -71426833 + (A)n Simple_repeat Simple_repeat 1 24 0 2037 103 0 39 chr13 48318212 48318523 -71426375 - AluJo SINE Alu -13 299 1 540 196 29 36 chr13 48319254 48319392 -71425506 - L2 LINE L2 -4 3268 3132 1984 111 9 70 chr13 48319639 48319954 -71424944 + AluSg SINE Alu 1 296 -14 1694 141 0 15 chr13 48320143 48320406 -71424492 + AluJo SINE Alu 38 296 -16 661 211 144 107 chr13 48320645 48320991 -71423907 - MLT1H1 LTR MaLR -7 548 190 180 322 0 44 chr13 48322661 48322751 -71422147 - L3 LINE CR1 -74 1503 1418 391 293 153 0 chr13 48322996 48323146 -71421752 - MIR SINE MIR -70 192 20 2049 152 0 3 chr13 48323171 48323473 -71421425 - AluJb SINE Alu -10 302 2 248 276 58 23 chr13 48323641 48323728 -71421170 + MLT1H1 LTR MaLR 100 189 -366 251 235 44 96 chr13 48323747 48323883 -71421015 + MLT1H LTR MaLR 421 549 0 373 310 58 26 chr13 48324522 48324748 -71420150 - L3 LINE CR1 -721 856 624 1808 138 48 17 chr13 48325064 48325353 -71419545 - AluJb SINE Alu -14 298 1 186 167 0 0 chr13 48325566 48325602 -71419296 + GA-rich Low_complexity Low_complexity 2 37 0 395 241 37 9 chr13 48325695 48325803 -71419095 - L2 LINE L2 -23 3290 3180 317 294 139 28 chr13 48326010 48326932 -71417966 - L2 LINE L2 -495 2819 1721 231 293 24 0 chr13 48327904 48327986 -71416912 + L2 LINE L2 2228 2311 -1003 393 234 95 32 chr13 48328179 48328270 -71416628 + MIR SINE MIR 48 155 -107 1911 177 88 24 chr13 48328270 48328688 -71416210 + MER65A LTR ERV1 1 445 0 393 234 95 32 chr13 48328688 48328754 -71416144 + MIR SINE MIR 155 215 -47 468 153 0 0 chr13 48330479 48330551 -71414347 - FLAM SINE Alu -15 128 57 308 167 0 0 chr13 48330595 48330643 -71414255 - Alu SINE Alu -244 56 9 296 284 71 31 chr13 48330949 48331076 -71413822 + MIR SINE MIR 15 146 -116 7154 125 40 30 chr13 48334611 48335350 -71409548 + Tigger3b DNA MER2_type 1 758 -2270 1745 169 3 7 chr13 48335350 48335646 -71409252 - AluJo SINE Alu -17 295 1 7154 125 40 30 chr13 48335646 48336125 -71408773 + Tigger3b DNA MER2_type 758 1231 0 2632 54 0 0 chr13 48336651 48336949 -71407949 + AluY SINE Alu 1 298 -13 262 285 23 54 chr13 48336959 48337089 -71407809 - MER5A DNA MER1_type -63 126 1 185 286 104 26 chr13 48337643 48337720 -71407178 + MIR SINE MIR 8 90 -172 264 284 101 18 chr13 48337994 48338163 -71406735 - MIR SINE MIR -48 214 32 * 695 268 16 49 chr13 48338111 48338354 -71406544 + MIR SINE MIR 6 240 -22 3588 200 60 19 chr13 48338896 48339057 -71405841 + L1MB5 LINE L1 2880 3033 -3113 2280 113 3 0 chr13 48339057 48339366 -71405532 + AluSg SINE Alu 1 310 0 3588 200 60 19 chr13 48339366 48340152 -71404746 + L1MB5 LINE L1 3033 3866 -2280 1970 169 102 32 chr13 48340156 48340588 -71404310 + MLT1C LTR MaLR 6 467 0 532 157 39 10 chr13 48340593 48340695 -71404203 + L1MB5 LINE L1 3860 3964 -2182 1961 163 0 0 chr13 48340699 48341006 -71403892 + AluJb SINE Alu 1 307 -5 1867 151 41 60 chr13 48341015 48341630 -71403268 + L1MB5 LINE L1 4918 5528 -652 1575 181 53 20 chr13 48341631 48341930 -71402968 + AluJb SINE Alu 1 309 -3 548 80 5 120 chr13 48341939 48342139 -71402759 + (GGAAA)n Simple_repeat Simple_repeat 3 179 0 3261 146 40 35 chr13 48342142 48342422 -71402476 + L1MB5 LINE L1 5535 5812 -362 2092 120 33 7 chr13 48342422 48342723 -71402175 + AluSx SINE Alu 1 309 -3 3261 146 40 35 chr13 48342723 48343071 -71401827 + L1MB5 LINE L1 5812 6166 -8 21 0 0 0 chr13 48343087 48343108 -71401790 + AT_rich Low_complexity Low_complexity 1 21 0 581 214 71 25 chr13 48344526 48344764 -71400134 - L1ME4a LINE L1 -7 6114 5866 394 279 88 7 chr13 48344831 48344967 -71399931 - MIR SINE MIR -12 250 104 1625 163 30 30 chr13 48345432 48345800 -71399098 - L1MB8 LINE L1 -6 6172 5805 215 302 23 0 chr13 48345805 48345891 -71399007 + MIR SINE MIR 166 253 -9 555 308 165 43 chr13 48346139 48346558 -71398340 - L3b LINE CR1 -9 1574 1105 558 180 168 12 chr13 48347262 48347423 -71397475 + MER53 DNA DNA 4 189 0 2284 110 0 16 chr13 48347481 48347798 -71397100 + AluSx SINE Alu 1 312 0 305 264 27 55 chr13 48347841 48347951 -71396947 - L2 LINE L2 -7 3306 3200 214 301 78 10 chr13 48348079 48348182 -71396716 + MIR SINE MIR 81 190 -72 2247 103 0 0 chr13 48348958 48349250 -71395648 + AluSp SINE Alu 1 292 -21 21 0 0 0 chr13 48349253 48349274 -71395624 + AT_rich Low_complexity Low_complexity 1 21 0 249 338 142 0 chr13 48349740 48349888 -71395010 - MIR3 SINE MIR -36 172 4 23 0 0 0 chr13 48350613 48350636 -71394262 + AT_rich Low_complexity Low_complexity 1 23 0 1985 152 0 0 chr13 48350757 48351053 -71393845 - AluSx SINE Alu -14 298 3 592 314 105 15 chr13 48351233 48351338 -71393560 - L1ME4a LINE L1 -319 5802 5708 709 177 125 31 chr13 48351338 48351530 -71393368 - MER6B DNA MER2_type 0 210 1 592 314 105 15 chr13 48351530 48351892 -71393006 - L1ME4a LINE L1 -413 5708 5293 584 304 73 30 chr13 48351914 48352008 -71392890 - L1ME4a LINE L1 -927 5219 5130 1501 196 28 14 chr13 48352008 48352294 -71392604 + AluJb SINE Alu 1 290 -22 584 304 73 30 chr13 48352294 48352830 -71392068 - L1ME4a LINE L1 -1016 5130 4562 567 222 9 0 chr13 48352875 48352983 -71391915 + MER21B LTR ERV1 329 437 -426 477 0 0 0 chr13 48352996 48353049 -71391849 + (TA)n Simple_repeat Simple_repeat 2 54 0 3501 135 27 15 chr13 48353220 48353822 -71391076 + LTR38B LTR ERV1 1 609 -1 1802 152 7 11 chr13 48353822 48354098 -71390800 + AluJo SINE Alu 27 301 -11 222 61 61 0 chr13 48354119 48354168 -71390730 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 501 312 38 38 chr13 48354211 48354474 -71390424 + L1ME4a LINE L1 5630 5892 -229 2094 120 3 10 chr13 48354635 48354943 -71389955 + AluSg SINE Alu 1 306 -4 24 0 0 0 chr13 48354991 48355015 -71389883 + AT_rich Low_complexity Low_complexity 1 24 0 469 344 134 30 chr13 48356694 48357012 -71387886 + L2 LINE L2 1925 2208 -1106 2523 74 0 3 chr13 48357012 48357323 -71387575 - AluY SINE Alu -1 310 1 469 344 134 30 chr13 48357323 48357711 -71387187 + L2 LINE L2 2208 2705 -609 857 214 105 68 chr13 48358209 48358620 -71386278 - MER67C LTR ERV1 -139 571 146 397 284 45 30 chr13 48361121 48361184 -71383714 + L2 LINE L2 3008 3069 -244 351 0 0 0 chr13 48361184 48361223 -71383675 + (CA)n Simple_repeat Simple_repeat 1 39 0 397 284 45 30 chr13 48361223 48361360 -71383538 + L2 LINE L2 3069 3211 -102 4443 21 0 0 chr13 48361597 48362112 -71382786 + L1PA3 LINE L1 5641 6155 0 2532 75 0 0 chr13 48362573 48362878 -71382020 - AluSq SINE Alu -8 305 1 195 265 20 0 chr13 48363296 48363345 -71381553 - MIR SINE MIR -110 152 103 1953 104 0 0 chr13 48364691 48364950 -71379948 - AluSg1 SINE Alu -2 307 49 1927 117 31 9 chr13 48365003 48365329 -71379569 + L1MA4 LINE L1 5963 6295 -5 32 0 0 0 chr13 48365474 48365506 -71379392 + AT_rich Low_complexity Low_complexity 1 32 0 207 279 16 16 chr13 48366001 48366062 -71378836 - L2 LINE L2 -32 3240 3180 1283 105 42 155 chr13 48366158 48366519 -71378379 + MER33 DNA MER1_type 5 324 0 465 226 250 43 chr13 48366710 48366918 -71377980 - MIR SINE MIR -2 260 10 446 124 58 0 chr13 48367006 48367127 -71377771 + GA-rich Low_complexity Low_complexity 2 129 0 2093 71 4 8 chr13 48367969 48368236 -71376662 - AluY SINE Alu -12 299 34 23 54 0 0 chr13 48368618 48368655 -71376243 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr13 48368738 48368768 -71376130 + AT_rich Low_complexity Low_complexity 1 30 0 388 61 0 30 chr13 48369506 48369572 -71375326 + (TA)n Simple_repeat Simple_repeat 2 65 0 224 256 26 13 chr13 48369673 48369751 -71375147 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 428 282 90 27 chr13 48370096 48370284 -71374614 - MIR SINE MIR -12 250 51 207 182 0 0 chr13 48371303 48371336 -71373562 + polypyrimidine Low_complexity Low_complexity 2 34 0 1843 163 0 3 chr13 48371732 48372020 -71372878 + AluSx SINE Alu 1 287 -25 22 0 0 0 chr13 48372741 48372763 -71372135 + AT_rich Low_complexity Low_complexity 1 22 0 228 67 0 0 chr13 48372899 48372929 -71371969 + (TA)n Simple_repeat Simple_repeat 2 31 0 406 305 66 73 chr13 48372972 48373411 -71371487 + MARNA DNA Mariner 125 560 -26 646 169 21 42 chr13 48373450 48373592 -71371306 + L1MB2 LINE L1 5953 6091 -80 233 245 75 0 chr13 48374479 48374532 -71370366 - L2 LINE L2 -4 3309 3253 327 25 0 0 chr13 48374710 48374750 -71370148 + (TG)n Simple_repeat Simple_repeat 1 40 0 1603 290 57 46 chr13 48374786 48375565 -71369333 - L2 LINE L2 -340 2974 2188 717 163 57 0 chr13 48375923 48376046 -71368852 + AluJb SINE Alu 5 134 -178 694 183 9 0 chr13 48376058 48376173 -71368725 + AluJb SINE Alu 103 218 -94 185 0 0 39 chr13 48376189 48376215 -71368683 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 325 284 49 10 chr13 48376965 48377067 -71367831 + L2 LINE L2 2948 3053 -219 241 337 179 0 chr13 48377991 48378086 -71366812 + L2 LINE L2 3158 3269 -3 1848 178 0 20 chr13 48378541 48378844 -71366054 + AluJo SINE Alu 1 297 -15 843 204 85 27 chr13 48378857 48379117 -71365781 + L1MC5 LINE L1 6633 6907 -1054 222 174 0 0 chr13 48379201 48379247 -71365651 + (TA)n Simple_repeat Simple_repeat 1 46 0 479 263 21 44 chr13 48379305 48379574 -71365324 + L1MC5 LINE L1 7005 7256 -733 23 33 0 0 chr13 48379706 48379736 -71365162 + AT_rich Low_complexity Low_complexity 1 30 0 195 391 0 0 chr13 48379821 48379890 -71365008 - L3 LINE CR1 -1468 109 41 2094 94 52 3 chr13 48380230 48380516 -71364382 + AluSg SINE Alu 1 300 -10 770 262 57 13 chr13 48380632 48380861 -71364037 + MIR SINE MIR 12 250 -12 316 260 71 39 chr13 48380932 48381086 -71363812 + L1ME4a LINE L1 5962 6120 -1 274 309 59 33 chr13 48381222 48381416 -71363482 + L2 LINE L2 2724 2919 -353 238 246 45 36 chr13 48381505 48381615 -71363283 + MLT1J2 LTR MaLR 338 448 -2 547 207 138 69 chr13 48381646 48382026 -71362872 + HAL1 LINE L1 2027 2444 -63 2255 120 3 0 chr13 48382026 48382335 -71362563 + AluSx SINE Alu 1 310 -2 547 207 138 69 chr13 48382335 48382403 -71362495 + HAL1 LINE L1 2444 2506 -1 297 120 0 0 chr13 48383301 48383351 -71361547 + L1MB8 LINE L1 6108 6157 -21 2198 148 8 13 chr13 48384057 48384434 -71360464 + THE1C LTR MaLR 1 375 0 190 347 159 11 chr13 48384461 48384637 -71360261 + L2 LINE L2 2578 2779 -535 2325 112 0 0 chr13 48384645 48385041 -71359857 + AluSg SINE Alu 1 396 0 424 169 60 12 chr13 48385348 48385431 -71359467 - MIR SINE MIR -10 252 166 21 112 0 0 chr13 48385487 48385585 -71359313 + AT_rich Low_complexity Low_complexity 1 98 0 9274 113 16 1 chr13 48385629 48387156 -71357742 + L1M1 LINE L1 2060 3609 -3956 953 160 0 0 chr13 48387156 48387300 -71357598 + AluJb SINE Alu 169 312 0 1681 174 0 30 chr13 48387300 48387673 -71357225 + L1M1 LINE L1 3597 3958 -3607 454 204 92 0 chr13 48387674 48387772 -71357126 + L1M1 LINE L1 5484 5590 -1975 4370 140 14 11 chr13 48387823 48389813 -71355085 + L1MA2 LINE L1 4065 6304 0 1856 92 0 0 chr13 48389858 48390097 -71354801 + AluSq SINE Alu 67 305 -8 1846 149 47 0 chr13 48390182 48390457 -71354441 + AluSx SINE Alu 2 289 -23 711 139 26 80 chr13 48390486 48390637 -71354261 + FLAM_C SINE Alu 1 143 0 2040 114 34 3 chr13 48390641 48390999 -71353899 + L1MC/D LINE L1 5317 5685 -557 1942 142 0 45 chr13 48391082 48391391 -71353507 + AluJb SINE Alu 1 295 -17 191 176 0 0 chr13 48392171 48392205 -71352693 + L2 LINE L2 3280 3313 0 872 191 106 12 chr13 48392343 48392631 -71352267 + L1ME1 LINE L1 5190 5503 -743 1863 220 99 28 chr13 48392635 48393038 -71351860 + L1ME1 LINE L1 5619 6067 -99 2339 102 0 0 chr13 48393038 48393333 -71351565 - AluSg SINE Alu -15 295 1 1863 220 99 28 chr13 48393333 48393433 -71351465 + L1ME1 LINE L1 6067 6158 -8 33 0 0 0 chr13 48393702 48393735 -71351163 + AT_rich Low_complexity Low_complexity 1 33 0 2008 121 57 7 chr13 48394622 48394920 -71349978 - AluSq SINE Alu 0 313 1 1821 165 21 3 chr13 48395048 48395339 -71349559 - AluJb SINE Alu -16 296 1 2381 56 7 13 chr13 48396115 48396419 -71348479 - AluY SINE Alu -9 302 1 262 297 10 0 chr13 48396912 48397013 -71347885 - MARNA DNA Mariner -51 535 434 195 42 0 0 chr13 48397517 48397541 -71347357 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chr13 48397766 48397796 -71347102 + AT_rich Low_complexity Low_complexity 1 30 0 434 241 178 29 chr13 48398623 48398797 -71346101 - MIR SINE MIR -58 204 5 2229 45 0 17 chr13 48398970 48399261 -71345637 + L1PA5 LINE L1 5869 6154 0 738 249 104 10 chr13 48399978 48400179 -71344719 + MIR SINE MIR 43 262 0 270 0 0 0 chr13 48400339 48400369 -71344529 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 724 144 68 8 chr13 48400718 48400836 -71344062 - LTR9B LTR ERV1 -432 212 88 5608 82 42 11 chr13 48400836 48401666 -71343232 + SVA Other Other 13 868 -518 185 376 0 0 chr13 48402455 48402564 -71342334 - MIR SINE MIR -134 128 20 811 222 64 5 chr13 48403101 48403304 -71341594 + MER20 DNA MER1_type 1 215 -4 609 257 47 34 chr13 48403382 48403583 -71341315 - MIR SINE MIR -14 248 44 267 193 0 0 chr13 48403732 48403820 -71341078 + (TG)n Simple_repeat Simple_repeat 1 88 0 3534 245 68 30 chr13 48404700 48406794 -71338104 + L1M4 LINE L1 795 3074 -3570 6882 53 2 32 chr13 48406901 48407818 -71337080 + SVA Other Other 497 1386 0 31 26 0 0 chr13 48407861 48407899 -71336999 + AT_rich Low_complexity Low_complexity 1 38 0 2273 95 7 0 chr13 48407943 48408237 -71336661 - AluY SINE Alu -15 296 1 1220 130 17 35 chr13 48408544 48408774 -71336124 + L1MB7 LINE L1 5940 6165 -19 22 0 0 0 chr13 48408970 48408992 -71335906 + AT_rich Low_complexity Low_complexity 1 22 0 2178 125 0 0 chr13 48409021 48409326 -71335572 - AluSq SINE Alu -8 305 1 260 230 40 0 chr13 48409497 48409571 -71335327 - L1ME3A LINE L1 -88 6082 6006 235 139 0 0 chr13 48409625 48409661 -71335237 - MIR SINE MIR -110 152 117 1285 300 42 9 chr13 48409664 48410208 -71334690 - L1ME3A LINE L1 -208 5962 5401 25 51 0 0 chr13 48411191 48411230 -71333668 + AT_rich Low_complexity Low_complexity 1 39 0 14401 115 43 40 chr13 48411657 48411826 -71333072 - Tigger1 DNA MER2_type -1 2417 2250 768 41 10 0 chr13 48411826 48411923 -71332975 + L1PA3 LINE L1 6056 6153 -2 14401 115 43 40 chr13 48411923 48414161 -71330737 - Tigger1 DNA MER2_type -168 2250 1 435 333 37 7 chr13 48414443 48414578 -71330320 - L2 LINE L2 0 3272 3134 199 369 12 24 chr13 48415157 48415241 -71329657 + MIR SINE MIR 69 151 -57 275 348 189 0 chr13 48416028 48416192 -71328706 - L2 LINE L2 0 3272 3078 1814 150 19 0 chr13 48417149 48417456 -71327442 + L1M2 LINE L1 5473 5785 -506 2038 130 3 0 chr13 48417456 48417748 -71327150 + AluSx SINE Alu 1 293 -19 378 318 7 7 chr13 48417813 48417964 -71326934 - L1ME LINE L1 -578 5584 5434 1187 168 5 0 chr13 48417964 48418149 -71326749 - AluJb SINE Alu -56 256 71 795 176 0 0 chr13 48418159 48418284 -71326614 - FLAM_C SINE Alu -8 125 1 813 181 27 13 chr13 48418359 48418508 -71326390 - FRAM SINE Alu -25 151 1 25 0 0 0 chr13 48418685 48418710 -71326188 + AT_rich Low_complexity Low_complexity 1 25 0 475 261 73 105 chr13 48418728 48419383 -71325515 + HAL1 LINE L1 999 1632 -875 367 264 123 75 chr13 48419840 48420045 -71324853 + L1ME4a LINE L1 2104 2329 -4067 216 0 0 0 chr13 48420045 48420069 -71324829 + (CA)n Simple_repeat Simple_repeat 1 24 0 367 264 123 75 chr13 48420069 48420155 -71324743 + L1ME4a LINE L1 2329 2409 -3987 2098 91 0 18 chr13 48420462 48420768 -71324130 + AluSg SINE Alu 9 309 0 349 337 183 5 chr13 48421086 48421457 -71323441 + L1ME4a LINE L1 4108 4544 -1671 254 247 146 19 chr13 48421563 48421721 -71323177 + HAL1b LINE L1 1164 1341 -7 303 284 234 12 chr13 48421803 48422060 -71322838 + L1ME4a LINE L1 4588 4901 -1314 22 0 0 0 chr13 48422204 48422226 -71322672 + AT_rich Low_complexity Low_complexity 1 22 0 595 245 132 34 chr13 48422509 48422774 -71322124 + L1ME4a LINE L1 5583 5873 -317 457 307 13 0 chr13 48422814 48422964 -71321934 + MER104 DNA Tc2 28 179 -1 322 225 23 54 chr13 48423111 48423240 -71321658 + L1ME4a LINE L1 6061 6185 -5 2358 89 7 0 chr13 48423326 48423629 -71321269 - AluSg SINE Alu -5 305 1 294 150 0 0 chr13 48424080 48424120 -71320778 + Alu SINE Alu 1 40 -268 653 94 0 31 chr13 48424120 48424216 -71320682 + AluJb SINE Alu 208 300 -12 2257 100 3 0 chr13 48424524 48424823 -71320075 + AluSx SINE Alu 1 300 -12 354 265 6 0 chr13 48424944 48425049 -71319849 + L1ME2 LINE L1 6054 6166 0 188 268 0 0 chr13 48426574 48426615 -71318283 - L2 LINE L2 -4 3309 3269 260 262 16 0 chr13 48427256 48427317 -71317581 - L2 LINE L2 -6 3307 3246 339 44 0 0 chr13 48428531 48428576 -71316322 + (CA)n Simple_repeat Simple_repeat 2 46 0 2020 230 27 6 chr13 48431271 48431784 -71313114 + L1MEc LINE L1 859 1382 -5339 475 143 13 0 chr13 48431787 48431864 -71313034 + LTR54 LTR ERV1 404 481 -29 244 313 6 32 chr13 48431876 48432060 -71312838 + L1MEc LINE L1 1322 1500 -5040 8595 122 24 39 chr13 48432102 48433582 -71311316 + L1M1 LINE L1 1587 3044 -4521 354 147 9 4 chr13 48433590 48433810 -71311088 + AluJo SINE Alu 1 300 0 434 136 12 0 chr13 48433812 48433893 -71311005 + GA-rich Low_complexity Low_complexity 3 84 0 2961 117 30 36 chr13 48433893 48434267 -71310631 + L1MA3 LINE L1 5780 6152 -153 2302 84 0 42 chr13 48434267 48434577 -71310321 - AluY SINE Alu -14 297 1 2961 117 30 36 chr13 48434577 48434730 -71310168 + L1MA3 LINE L1 6152 6304 -1 301 368 57 24 chr13 48434786 48434995 -71309903 - L1MC4a LINE L1 -1223 6585 6370 36 87 0 0 chr13 48435725 48435817 -71309081 + AT_rich Low_complexity Low_complexity 1 92 0 884 111 0 15 chr13 48435841 48435976 -71308922 + FLAM_C SINE Alu 1 133 0 190 357 142 37 chr13 48436273 48436649 -71308249 - L2 LINE L2 -790 2524 2084 1592 165 36 25 chr13 48436649 48436928 -71307970 + AluJb SINE Alu 1 282 -30 190 357 142 37 chr13 48436928 48437036 -71307862 - L2 LINE L2 -1230 2084 1989 778 127 22 30 chr13 48437890 48438024 -71306874 + FLAM_C SINE Alu 1 133 0 1978 154 7 3 chr13 48439224 48439530 -71305368 + AluSx SINE Alu 1 307 -5 2434 150 65 14 chr13 48439777 48440210 -71304688 + LTR32 LTR ERVL 15 469 -2 318 52 0 103 chr13 48440453 48440511 -71304387 - MADE1 DNA Mariner -28 52 1 2032 156 0 29 chr13 48440737 48441084 -71303814 - MER1B DNA MER1_type 0 337 1 261 0 0 0 chr13 48441203 48441232 -71303666 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 534 220 98 50 chr13 48442548 48442737 -71302161 + L1ME4a LINE L1 5694 5872 -249 22 35 0 0 chr13 48442737 48442766 -71302132 + AT_rich Low_complexity Low_complexity 1 29 0 534 220 98 50 chr13 48442766 48442935 -71301963 + L1ME4a LINE L1 5872 6098 -23 2009 135 0 22 chr13 48443010 48443328 -71301570 + AluJb SINE Alu 2 312 0 2230 107 0 20 chr13 48443332 48443632 -71301266 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr13 48443632 48443656 -71301242 + AT_rich Low_complexity Low_complexity 1 24 0 652 217 8 0 chr13 48443811 48443931 -71300967 + L2 LINE L2 3189 3309 -4 24 0 0 0 chr13 48443938 48443962 -71300936 + AT_rich Low_complexity Low_complexity 1 24 0 719 281 41 8 chr13 48444387 48444629 -71300269 + MER112 DNA MER1_type 6 255 -5 1064 224 54 12 chr13 48444684 48444925 -71299973 + MIR SINE MIR 12 262 0 467 234 43 14 chr13 48445284 48445425 -71299473 - L1MB7 LINE L1 0 6184 6040 3413 172 49 14 chr13 48445963 48446656 -71298242 + L1MB8 LINE L1 5452 6168 -10 1912 136 30 7 chr13 48446663 48446958 -71297940 - AluSx SINE Alu -10 302 1 2173 96 3 0 chr13 48447073 48447355 -71297543 - AluSx SINE Alu -19 293 11 1247 182 0 22 chr13 48447477 48447702 -71297196 + AluJb SINE Alu 85 304 -8 392 242 36 129 chr13 48448510 48448704 -71296194 + MLT1J LTR MaLR 1 176 -335 261 196 71 0 chr13 48448712 48448768 -71296130 + L1MDa LINE L1 40 99 -6441 3290 202 63 96 chr13 48449095 48450190 -71294708 + L1MDa LINE L1 89 1147 -5393 2019 141 3 3 chr13 48450388 48450686 -71294212 + AluSx SINE Alu 1 298 -14 670 175 18 0 chr13 48450715 48450829 -71294069 - FLAM_A SINE Alu -11 131 16 812 236 39 0 chr13 48451226 48451408 -71293490 - MER5A DNA MER1_type 0 189 1 764 125 15 29 chr13 48451533 48451669 -71293229 + AluJb SINE Alu 1 134 -178 194 217 87 0 chr13 48451808 48451854 -71293044 - L2 LINE L2 0 3313 3264 3465 154 119 14 chr13 48452094 48452815 -71292083 + L1MC3 LINE L1 6987 7783 -2 404 138 0 0 chr13 48453675 48453733 -71291165 + MER58 DNA MER1_type 2363 2420 0 453 297 46 15 chr13 48454055 48454250 -71290648 - MLT1A1-int LTR MaLR -478 893 693 270 130 0 0 chr13 48454481 48454527 -71290371 + LTR49 LTR ERV1 2 47 -548 * 704 180 86 54 chr13 48454514 48454527 -71290371 + MER34B LTR ERV1 337 348 -217 2376 65 3 0 chr13 48454527 48454818 -71290080 - AluY SINE Alu -19 292 1 704 180 86 54 chr13 48454818 48455026 -71289872 + MER34B LTR ERV1 348 565 0 503 313 67 17 chr13 48455053 48455350 -71289548 - MLT1A1-int LTR MaLR -765 606 295 1725 165 4 0 chr13 48455525 48455791 -71289107 + AluJb SINE Alu 25 291 -21 2024 177 11 3 chr13 48455805 48456156 -71288742 - MLT1A1 LTR MaLR 0 365 12 1278 222 214 39 chr13 48456190 48456649 -71288249 - MLT1F LTR MaLR -3 539 1 193 247 0 136 chr13 48457160 48457241 -71287657 - MIR SINE MIR -73 189 120 1269 219 12 0 chr13 48457243 48457485 -71287413 - AluJo SINE Alu -66 246 2 344 334 58 30 chr13 48457516 48457911 -71286987 - L1ME LINE L1 -338 5783 5378 790 239 163 35 chr13 48459103 48459471 -71285427 - L1ME1 LINE L1 -4 6162 5748 * 1082 194 51 77 chr13 48459469 48459518 -71285380 + L1ME2 LINE L1 5559 5608 -556 2226 126 0 0 chr13 48459518 48459828 -71285070 + AluSx SINE Alu 1 310 -2 1082 194 51 77 chr13 48459828 48460128 -71284770 + L1ME2 LINE L1 5608 5899 -265 1569 165 73 0 chr13 48460269 48460529 -71284369 - AluJb SINE Alu -33 279 1 629 321 37 47 chr13 48460530 48460932 -71283966 - L1MEd LINE L1 -5286 833 436 548 308 19 10 chr13 48461056 48461264 -71283634 - L1MEd LINE L1 -5899 220 11 492 310 54 10 chr13 48461273 48461476 -71283422 - L3 LINE CR1 -715 862 651 353 350 122 14 chr13 48462335 48462549 -71282349 + MIR SINE MIR 20 256 -6 712 184 28 14 chr13 48462671 48462812 -71282086 + FLAM_C SINE Alu 1 143 0 384 305 103 62 chr13 48462882 48463154 -71281744 - L1MC4a LINE L1 -1470 6338 6056 242 272 11 22 chr13 48463168 48463260 -71281638 - L1MC4a LINE L1 -1907 5901 5811 498 233 0 17 chr13 48463304 48463424 -71281474 - L1MC4a LINE L1 -2001 5807 5690 652 219 159 56 chr13 48463434 48463602 -71281296 - L1MC4a LINE L1 -2232 5576 5368 2079 134 0 0 chr13 48463602 48463892 -71281006 - AluSx SINE Alu -20 292 3 652 219 159 56 chr13 48463892 48463993 -71280905 - L1MC4a LINE L1 -2440 5368 5279 549 290 114 18 chr13 48464156 48464428 -71280470 - HAL1b LINE L1 -835 513 216 662 145 145 8 chr13 48464656 48464773 -71280125 - FLAM_A SINE Alu 0 133 1 876 134 0 0 chr13 48465037 48465164 -71279734 - FLAM_C SINE Alu -16 127 1 302 186 75 36 chr13 48465796 48465899 -71278999 + LTR48 LTR ERV1 486 751 -13 1794 142 0 53 chr13 48465928 48466230 -71278668 - AluJb SINE Alu -26 286 1 574 301 122 44 chr13 48466346 48466897 -71278001 - HAL1b LINE L1 -498 850 257 398 170 140 0 chr13 48466987 48467087 -71277811 - L1MB4 LINE L1 -2 6178 6065 4049 176 117 20 chr13 48467382 48468809 -71276089 - L1PA16 LINE L1 -1 6165 4352 402 21 0 0 chr13 48468809 48468856 -71276042 + (TG)n Simple_repeat Simple_repeat 1 47 0 4049 176 117 20 chr13 48468856 48469112 -71275786 - L1PA16 LINE L1 -1814 4352 4122 207 0 0 0 chr13 48469315 48469338 -71275560 + (TA)n Simple_repeat Simple_repeat 2 24 0 1673 197 28 0 chr13 48469386 48469675 -71275223 + AluJb SINE Alu 1 297 -15 336 217 130 36 chr13 48469685 48469823 -71275075 - L1MB4 LINE L1 -2193 5802 5652 488 235 45 8 chr13 48469841 48469973 -71274925 + L1ME LINE L1 5406 5542 -622 * 817 227 89 38 chr13 48469960 48470251 -71274647 - L1MB4 LINE L1 -511 5655 5350 457 228 131 67 chr13 48470242 48470510 -71274388 - L1ME4a LINE L1 -234 5887 5603 * 2311 94 16 0 chr13 48470603 48470911 -71273987 + AluSq SINE Alu 1 313 0 279 54 0 0 chr13 48471833 48471870 -71273028 + (CCA)n Simple_repeat Simple_repeat 1 37 0 344 284 219 22 chr13 48473191 48473374 -71271524 + MIR SINE MIR 21 239 -23 349 202 87 10 chr13 48473569 48473673 -71271225 + L1ME4a LINE L1 5992 6103 -18 2273 65 0 26 chr13 48473740 48474046 -71270852 + AluSx SINE Alu 1 298 -14 596 103 164 35 chr13 48474051 48474167 -71270731 + FLAM_C SINE Alu 1 131 -2 401 120 0 40 chr13 48474180 48474255 -71270643 + L1ME LINE L1 5533 5604 -517 23 33 0 0 chr13 48474272 48474302 -71270596 + AT_rich Low_complexity Low_complexity 1 30 0 663 276 93 16 chr13 48474852 48475289 -71269609 - L1ME LINE L1 -336 5768 5305 528 281 107 60 chr13 48475440 48476045 -71268853 - L1ME LINE L1 -1956 4173 3518 258 302 147 23 chr13 48476435 48477034 -71267864 - L1ME LINE L1 -3044 3085 2413 316 219 100 62 chr13 48477125 48477285 -71267613 - L1ME LINE L1 -3850 2279 2114 1961 125 0 0 chr13 48477356 48477620 -71267278 - AluSx SINE Alu -24 288 25 349 267 104 45 chr13 48478005 48478342 -71266556 - HAL1b LINE L1 -770 1653 457 235 261 120 28 chr13 48478388 48478530 -71266368 - L1ME LINE L1 -5070 1049 895 180 182 0 136 chr13 48478579 48478645 -71266253 - L3 LINE CR1 -294 1283 1227 271 238 100 81 chr13 48478871 48479031 -71265867 + L1ME LINE L1 5599 5761 -360 53 0 0 0 chr13 48479031 48479084 -71265814 + AT_rich Low_complexity Low_complexity 1 53 0 253 169 99 14 chr13 48479291 48479362 -71265536 - MIR SINE MIR -50 212 136 312 27 0 0 chr13 48479563 48479600 -71265298 + (TA)n Simple_repeat Simple_repeat 1 37 0 2051 97 12 66 chr13 48480204 48480524 -71264374 - AluSg SINE Alu -7 303 1 8342 164 23 47 chr13 48480524 48481388 -71263510 - L1MC3 LINE L1 -25 7760 6877 2199 125 0 3 chr13 48481388 48481691 -71263207 - AluSx SINE Alu -10 302 1 8342 164 23 47 chr13 48481691 48482236 -71262662 - L1MC3 LINE L1 -908 6877 6399 1369 185 70 21 chr13 48482236 48482522 -71262376 + AluSg SINE Alu 3 302 -8 8342 164 23 47 chr13 48482522 48482879 -71262019 - L1MC3 LINE L1 -1386 6399 6035 4168 191 73 22 chr13 48482948 48483954 -71260944 - Charlie1a DNA MER1_type 0 1455 399 933 205 44 57 chr13 48484019 48484248 -71260650 - Charlie1a DNA MER1_type -1219 236 11 1835 119 8 8 chr13 48485529 48485790 -71259108 - AluSx SINE Alu -12 300 40 1445 142 41 0 chr13 48486247 48486466 -71258432 - AluJo SINE Alu -82 230 3 297 289 0 48 chr13 48486491 48486574 -71258324 - MIR SINE MIR -172 90 12 228 291 197 33 chr13 48486579 48486935 -71257963 + L2 LINE L2 2005 2473 -841 185 343 152 39 chr13 48486936 48487114 -71257784 + L2 LINE L2 2678 2875 -439 21 0 0 0 chr13 48487507 48487528 -71257370 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 48487965 48487996 -71256902 + AT_rich Low_complexity Low_complexity 1 31 0 600 266 48 16 chr13 48488958 48489146 -71255752 + MIR SINE MIR 36 229 -33 2969 209 47 65 chr13 48489727 48490532 -71254366 - MER21B LTR ERV1 -54 809 19 274 238 60 24 chr13 48490557 48490641 -71254257 - MER21B LTR ERV1 -776 87 1 1989 116 7 23 chr13 48491099 48491402 -71253496 - AluSx SINE Alu -12 300 3 894 180 72 68 chr13 48491428 48491706 -71253192 - LTR4 LTR ERV1 0 596 318 512 249 19 80 chr13 48491898 48492111 -71252787 - LTR4 LTR ERV1 -396 200 1 534 241 87 34 chr13 48492237 48492444 -71252454 - LTR48B LTR ERV1 -304 340 123 1675 179 0 39 chr13 48492873 48493180 -71251718 + AluJo SINE Alu 1 295 -17 639 273 54 66 chr13 48493596 48493633 -71251265 - LTR24B LTR ERV1 -6 570 534 2300 106 0 0 chr13 48493633 48493926 -71250972 - AluSq SINE Alu -16 297 5 639 273 54 66 chr13 48493926 48494222 -71250676 - LTR24B LTR ERV1 -42 534 241 1481 198 10 26 chr13 48494245 48494548 -71250350 + AluJo SINE Alu 1 298 -14 419 181 9 57 chr13 48494607 48494712 -71250186 - LTR24B LTR ERV1 -365 100 1 1500 208 10 48 chr13 48494734 48495047 -71249851 - AluJo SINE Alu 0 302 2 23 33 0 0 chr13 48495176 48495206 -71249692 + AT_rich Low_complexity Low_complexity 1 30 0 1983 138 10 14 chr13 48495209 48495505 -71249393 + AluSx SINE Alu 1 295 -17 941 318 125 40 chr13 48497060 48497730 -71247168 - L3 LINE CR1 -673 904 178 23 33 0 0 chr13 48497773 48497803 -71247095 + AT_rich Low_complexity Low_complexity 1 30 0 1897 157 14 3 chr13 48498659 48498945 -71245953 + AluJb SINE Alu 1 289 -23 1691 161 9 40 chr13 48499049 48499371 -71245527 - AluJo SINE Alu 0 312 1 220 191 43 0 chr13 48499752 48499799 -71245099 + (CATA)n Simple_repeat Simple_repeat 4 52 0 180 0 0 0 chr13 48500008 48500028 -71244870 + (TA)n Simple_repeat Simple_repeat 2 21 0 933 125 0 22 chr13 48500029 48500165 -71244733 - FLAM_C SINE Alu 0 133 1 23 33 0 0 chr13 48500165 48500195 -71244703 + AT_rich Low_complexity Low_complexity 1 30 0 202 190 17 35 chr13 48500860 48500918 -71243980 + CT-rich Low_complexity Low_complexity 2 58 0 1959 160 0 3 chr13 48501362 48501668 -71243230 + AluJb SINE Alu 1 305 -7 2045 142 0 14 chr13 48502074 48502370 -71242528 + AluSx SINE Alu 1 292 -20 566 300 89 0 chr13 48502397 48502577 -71242321 + L1ME4a LINE L1 5447 5642 -2166 229 297 55 0 chr13 48502778 48502869 -71242029 + L1ME4a LINE L1 5741 5836 -1972 1228 186 5 9 chr13 48502869 48503079 -71241819 - MER3 DNA MER1_type 0 209 1 2526 94 51 14 chr13 48503089 48503440 -71241458 - THE1B LTR MaLR 0 364 1 1848 186 0 3 chr13 48503586 48503882 -71241016 - AluJb SINE Alu -17 295 1 23 0 0 0 chr13 48503885 48503908 -71240990 + AT_rich Low_complexity Low_complexity 1 23 0 867 185 20 0 chr13 48504248 48504399 -71240499 + FAM SINE Alu 12 165 -20 1658 163 16 16 chr13 48505248 48505554 -71239344 + AluJb SINE Alu 1 306 -6 530 230 122 12 chr13 48505725 48505898 -71239000 - MIR SINE MIR -33 229 39 1952 139 3 3 chr13 48506739 48507033 -71237865 + AluJb SINE Alu 1 294 -18 317 266 53 35 chr13 48507081 48507194 -71237704 + L1ME4a LINE L1 5815 5929 -235 303 200 130 20 chr13 48507365 48507465 -71237433 + L1ME4a LINE L1 5976 6086 -35 187 286 302 0 chr13 48507616 48507742 -71237156 - MIR3 SINE MIR -7 201 38 767 226 6 28 chr13 48508754 48508935 -71235963 - MIR SINE MIR -55 207 31 1859 155 30 0 chr13 48511712 48512015 -71232883 - AluJo SINE Alu 0 312 1 2148 107 3 3 chr13 48512355 48512665 -71232233 - AluSq SINE Alu 0 313 1 366 277 218 16 chr13 48512973 48513161 -71231737 + MIR SINE MIR 34 259 -3 1458 196 57 45 chr13 48513956 48514134 -71230764 + MER58B DNA MER1_type 2 187 -2233 1526 189 60 0 chr13 48514134 48514415 -71230483 + AluJo SINE Alu 1 298 -14 1458 196 57 45 chr13 48514415 48514572 -71230326 + MER58B DNA MER1_type 187 341 0 1732 155 7 42 chr13 48515429 48515738 -71229160 - AluJo SINE Alu -14 298 1 217 310 195 17 chr13 48516132 48516306 -71228592 + MIR SINE MIR 10 214 -48 714 259 96 0 chr13 48516806 48517003 -71227895 + MIR SINE MIR 26 241 -21 902 132 90 0 chr13 48517202 48517346 -71227552 - AluSg/x SINE Alu -1 311 155 2248 108 10 0 chr13 48517686 48517991 -71226907 - AluSx SINE Alu -4 308 1 1077 266 57 55 chr13 48518011 48518089 -71226809 - L1MC4a LINE L1 -1872 5936 5860 2300 100 0 16 chr13 48518089 48518399 -71226499 + AluSx SINE Alu 1 305 -7 1077 266 57 55 chr13 48518399 48518738 -71226160 - L1MC4a LINE L1 -1948 5860 5518 1119 178 70 19 chr13 48519067 48519280 -71225618 + AluJb SINE Alu 1 224 -88 24 67 0 0 chr13 48519289 48519334 -71225564 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr13 48520212 48520244 -71224654 + AT_rich Low_complexity Low_complexity 1 32 0 1814 174 7 3 chr13 48520775 48521062 -71223836 + AluJb SINE Alu 3 290 -22 2440 199 151 100 chr13 48521483 48522739 -71222159 - HAL1 LINE L1 -559 1948 630 2561 50 0 0 chr13 48523165 48523466 -71221432 - AluSg SINE Alu -5 305 5 2185 79 4 0 chr13 48523565 48523893 -71221005 - AluSg SINE Alu 0 330 2 207 0 0 0 chr13 48524205 48524228 -71220670 + (CGGG)n Simple_repeat Simple_repeat 2 24 0 280 291 196 59 chr13 48524749 48524927 -71219971 - L2 LINE L2 -38 3234 3082 1622 58 19 0 chr13 48524927 48525132 -71219766 - AluSp SINE Alu -9 304 96 280 291 196 59 chr13 48525132 48525224 -71219674 - L2 LINE L2 -190 3082 2927 1084 304 125 29 chr13 48525335 48526293 -71218605 + L2 LINE L2 2247 3297 -16 220 128 0 0 chr13 48526298 48526337 -71218561 + L2 LINE L2 3275 3313 0 2435 93 3 0 chr13 48529097 48529409 -71215489 - AluSp SINE Alu 0 313 1 2419 84 10 0 chr13 48529777 48530087 -71214811 - AluSq SINE Alu 0 313 1 29 37 0 19 chr13 48530087 48530114 -71214784 + AT_rich Low_complexity Low_complexity 1 27 -26 1877 162 0 7 chr13 48530114 48530410 -71214488 + AluJb SINE Alu 1 294 -18 29 37 0 19 chr13 48530410 48530436 -71214462 + AT_rich Low_complexity Low_complexity 27 53 0 2008 116 13 13 chr13 48530816 48531119 -71213779 - AluSq SINE Alu -10 303 1 974 200 76 89 chr13 48531585 48531818 -71213080 + MER33 DNA MER1_type 1 226 -2359 1914 146 36 7 chr13 48531818 48532120 -71212778 - AluSx SINE Alu -1 311 1 974 200 76 89 chr13 48532120 48532214 -71212684 + MER33 DNA MER1_type 226 320 -4 1741 149 10 30 chr13 48532264 48532560 -71212338 + AluJb SINE Alu 1 290 -22 5070 32 17 3 chr13 48532584 48533175 -71211723 + SVA Other Other 635 1233 -153 277 43 43 0 chr13 48533192 48533239 -71211659 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 228 234 62 0 chr13 48534103 48534167 -71210731 - MIR SINE MIR 0 262 195 1197 182 91 23 chr13 48534211 48534475 -71210423 + AluJo SINE Alu 1 282 -30 2554 65 0 7 chr13 48534991 48535299 -71209599 - AluY SINE Alu -3 308 3 534 289 86 31 chr13 48535404 48535695 -71209203 - L1ME3A LINE L1 -307 5863 5557 1358 108 10 0 chr13 48535695 48535889 -71209009 - Tigger5 DNA MER2_type -77 2246 2051 813 161 8 0 chr13 48535888 48536018 -71208880 - MER2 DNA MER2_type -214 131 1 * 355 233 0 0 chr13 48536061 48536151 -71208747 - L1ME3A LINE L1 -1495 4651 4562 41 0 0 0 chr13 48536167 48536208 -71208690 + AT_rich Low_complexity Low_complexity 1 41 0 220 258 54 12 chr13 48536241 48536408 -71208490 + (TATG)n Simple_repeat Simple_repeat 2 175 0 * 374 218 41 24 chr13 48536324 48536494 -71208404 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 264 172 0 17 chr13 48536507 48536565 -71208333 - L1ME3A LINE L1 -1610 4536 4480 198 0 0 0 chr13 48536633 48536655 -71208243 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 586 318 72 18 chr13 48536671 48537115 -71207783 - L1ME3A LINE L1 -1785 4361 3894 398 204 65 126 chr13 48537226 48537311 -71207587 - L1MC4 LINE L1 -128 7914 7825 2213 105 3 10 chr13 48537311 48537607 -71207291 - AluSc SINE Alu -15 294 1 398 204 65 126 chr13 48537607 48537634 -71207264 - L1MC4 LINE L1 -217 7825 7798 2452 119 28 19 chr13 48537634 48537995 -71206903 + THE1B LTR MaLR 1 364 0 398 204 65 126 chr13 48537995 48538111 -71206787 - L1MC4 LINE L1 -244 7798 7699 1928 151 3 7 chr13 48538129 48538421 -71206477 - AluJb SINE Alu -21 291 1 1647 149 76 21 chr13 48538579 48538867 -71206031 - AluJo SINE Alu -8 304 1 453 285 20 0 chr13 48538917 48538936 -71205962 - L1MA10 LINE L1 -1 6333 6315 1502 239 74 9 chr13 48538936 48539383 -71205515 - L1ME2 LINE L1 -14 6150 5675 2325 87 0 3 chr13 48539424 48539724 -71205174 - AluSq SINE Alu -14 299 1 305 316 62 11 chr13 48539806 48539983 -71204915 - L1ME2 LINE L1 -1771 4375 4190 1605 192 107 0 chr13 48540018 48540562 -71204336 - L1ME LINE L1 -510 5656 5046 2517 73 0 0 chr13 48541425 48541727 -71203171 - AluSq SINE Alu -11 302 1 482 296 129 21 chr13 48541781 48542014 -71202884 - MLT1L LTR MaLR -6 609 352 1838 164 0 23 chr13 48542569 48542874 -71202024 + AluJb SINE Alu 3 300 -12 656 298 113 55 chr13 48543464 48543552 -71201346 + L2 LINE L2 2285 2366 -947 441 0 0 0 chr13 48543552 48543601 -71201297 + (CA)n Simple_repeat Simple_repeat 2 50 0 656 298 113 55 chr13 48543601 48544472 -71200426 + L2 LINE L2 2366 3297 -16 275 269 34 89 chr13 48544593 48544695 -71200203 - L1M4 LINE L1 -914 5232 5126 1782 157 28 3 chr13 48544695 48544981 -71199917 - AluJo SINE Alu -19 293 1 275 269 34 89 chr13 48544981 48545205 -71199693 - L1M4 LINE L1 -1020 5126 4924 24 0 0 0 chr13 48546421 48546445 -71198453 + AT_rich Low_complexity Low_complexity 1 24 0 999 223 70 4 chr13 48546631 48546860 -71198038 - MIR SINE MIR -13 249 6 2790 10 0 0 chr13 48546931 48547229 -71197669 - AluY SINE Alu -11 300 3 237 237 61 53 chr13 48547757 48547871 -71197027 + L1MC5 LINE L1 7793 7907 -54 2295 89 0 7 chr13 48548139 48548443 -71196455 - AluSc SINE Alu -7 302 1 2271 116 0 0 chr13 48550856 48551159 -71193739 - AluSg SINE Alu -7 303 1 922 86 8 16 chr13 48551771 48551899 -71192999 + L1PB2 LINE L1 6023 6149 -2 2342 96 0 3 chr13 48552571 48552872 -71192026 - AluSq SINE Alu -13 300 1 2135 139 0 0 chr13 48553343 48553644 -71191254 - AluSx SINE Alu -11 301 1 536 205 31 75 chr13 48553878 48553983 -71190915 - MER5A DNA MER1_type -6 183 86 2467 93 0 0 chr13 48553983 48554294 -71190604 + AluSx SINE Alu 1 311 -1 536 205 31 75 chr13 48554294 48554349 -71190549 - MER5A DNA MER1_type -103 86 30 343 255 152 37 chr13 48554648 48554891 -71190007 + L1ME4a LINE L1 5848 6118 -3 224 296 37 12 chr13 48556918 48556999 -71187899 + L2 LINE L2 3190 3272 0 184 226 151 21 chr13 48557539 48557632 -71187266 + MER5A DNA MER1_type 1 105 -84 2487 79 0 0 chr13 48557704 48558009 -71186889 - AluSc SINE Alu -4 305 1 1988 140 64 14 chr13 48558589 48558946 -71185952 - THE1C LTR MaLR 0 375 1 1913 141 54 30 chr13 48559269 48559393 -71185505 - L1MB3 LINE L1 0 6183 6064 2211 120 3 84 chr13 48559393 48559760 -71185138 - MER1B DNA MER1_type 0 337 1 1913 141 54 30 chr13 48559760 48560003 -71184895 - L1MB3 LINE L1 -119 6064 5807 183 158 0 0 chr13 48560389 48560427 -71184471 + L2 LINE L2 3275 3312 -1 192 152 0 0 chr13 48562596 48562629 -71182269 + (CA)n Simple_repeat Simple_repeat 2 34 0 2204 81 14 17 chr13 48562848 48563145 -71181753 + AluSx SINE Alu 1 296 -16 2429 80 0 3 chr13 48563839 48564138 -71180760 + AluSg SINE Alu 1 298 -12 806 175 8 8 chr13 48566262 48566388 -71178510 - FLAM_A SINE Alu -7 126 1 1766 156 13 30 chr13 48566525 48566827 -71178071 + AluJb SINE Alu 1 297 -15 195 184 0 0 chr13 48566843 48566881 -71178017 + (TA)n Simple_repeat Simple_repeat 2 39 0 2037 98 73 11 chr13 48566974 48567261 -71177637 - AluSx SINE Alu -7 305 1 259 224 30 15 chr13 48567316 48567383 -71177515 - L2 LINE L2 0 3272 3205 193 286 0 0 chr13 48567520 48567569 -71177329 + L3 LINE CR1 1350 1398 -179 382 221 202 10 chr13 48568265 48568369 -71176529 - L2 LINE L2 -1 3271 3148 998 58 8 0 chr13 48569421 48569542 -71175356 + L1PA10 LINE L1 6047 6168 0 2347 81 10 0 chr13 48570030 48570325 -71174573 + AluSp SINE Alu 1 298 -15 22 35 0 0 chr13 48571013 48571042 -71173856 + AT_rich Low_complexity Low_complexity 1 29 0 2001 132 0 23 chr13 48571076 48571379 -71173519 + AluSx SINE Alu 6 301 -11 1671 169 53 3 chr13 48571799 48572083 -71172815 - AluJo SINE Alu -14 298 1 2255 93 3 3 chr13 48572284 48572606 -71172292 + AluSp SINE Alu 1 313 0 4013 108 9 9 chr13 48574481 48575008 -71169890 - MER1A DNA MER1_type 0 527 1 1961 128 35 0 chr13 48575893 48576175 -71168723 - AluJb SINE Alu -20 292 1 2365 85 10 7 chr13 48576206 48576511 -71168387 + AluSg SINE Alu 1 306 -4 2279 184 24 52 chr13 48576586 48576997 -71167901 + L1MB5 LINE L1 5678 6074 -100 1938 96 4 0 chr13 48576997 48577246 -71167652 + AluSx SINE Alu 51 300 -12 2279 184 24 52 chr13 48577246 48577338 -71167560 + L1MB5 LINE L1 6074 6167 -7 1760 158 41 3 chr13 48578083 48578375 -71166523 - AluJb SINE Alu -9 303 1 2128 108 14 11 chr13 48578914 48579201 -71165697 + AluSx SINE Alu 1 288 -24 240 200 78 0 chr13 48579201 48579291 -71165607 + GA-rich Low_complexity Low_complexity 1 97 0 2505 67 0 0 chr13 48579715 48580014 -71164884 + AluY SINE Alu 1 299 -12 1990 114 0 0 chr13 48580998 48581260 -71163638 + AluSc SINE Alu 1 262 -47 219 304 53 76 chr13 48581364 48581535 -71163363 - L2 LINE L2 -595 2719 2553 658 292 46 38 chr13 48581857 48582097 -71162801 + L1MB3 LINE L1 5515 5756 -2052 21 36 0 0 chr13 48582435 48582463 -71162435 + AT_rich Low_complexity Low_complexity 1 28 0 2304 120 3 40 chr13 48582597 48582947 -71161951 + MER1B DNA MER1_type 1 337 0 760 235 64 80 chr13 48583859 48584110 -71160788 - MIR SINE MIR -13 249 3 2317 82 20 0 chr13 48584293 48584586 -71160312 - AluY SINE Alu -12 299 1 973 124 0 8 chr13 48585734 48585863 -71159035 + FLAM_C SINE Alu 1 128 -5 2522 167 14 29 chr13 48586028 48586106 -71158792 + L1MB3 LINE L1 5706 5784 -399 4772 167 39 24 chr13 48586106 48586451 -71158447 + MER6 DNA MER2_type 1 339 -526 186 43 0 0 chr13 48586451 48586474 -71158424 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 4772 167 39 24 chr13 48586474 48586517 -71158381 + MER6 DNA MER2_type 339 380 -485 2370 71 3 7 chr13 48586517 48586814 -71158084 + AluSq SINE Alu 11 306 -7 4772 167 39 24 chr13 48586814 48587275 -71157623 + MER6 DNA MER2_type 380 864 -1 2522 167 14 29 chr13 48587275 48587471 -71157427 + L1MB3 LINE L1 5784 5981 -202 2582 60 0 0 chr13 48587471 48587773 -71157125 + AluY SINE Alu 1 302 -9 2522 167 14 29 chr13 48587773 48587982 -71156916 + L1MB3 LINE L1 5981 6183 0 818 227 52 0 chr13 48588725 48588897 -71156001 - MLT1G LTR MaLR -49 541 361 483 197 90 90 chr13 48588924 48589112 -71155786 - MER21B LTR ERV1 -361 570 290 411 321 64 28 chr13 48589657 48589906 -71154992 + L1M4 LINE L1 4491 4748 -1398 1847 116 18 39 chr13 48589926 48590211 -71154687 + AluSx SINE Alu 21 299 -13 478 276 26 0 chr13 48590250 48590406 -71154492 + HAL1 LINE L1 990 1149 -1358 870 124 24 143 chr13 48590423 48590632 -71154266 + AluJb SINE Alu 120 303 -9 286 242 194 75 chr13 48590633 48590702 -71154196 + HAL1 LINE L1 1196 1255 -1252 1763 132 0 75 chr13 48590702 48591021 -71153877 - AluJo SINE Alu -17 295 1 286 242 194 75 chr13 48591021 48591203 -71153695 + HAL1 LINE L1 1255 1477 -1030 801 130 0 21 chr13 48591215 48591477 -71153421 + AluJb SINE Alu 2 307 -5 2003 149 20 0 chr13 48591477 48591778 -71153120 + AluSx SINE Alu 1 307 -5 276 370 31 8 chr13 48591902 48592029 -71152869 + L3b LINE CR1 1102 1231 -352 2343 88 7 3 chr13 48592401 48592706 -71152192 + AluSg SINE Alu 1 306 -4 2641 48 0 0 chr13 48592707 48593017 -71151881 + AluY SINE Alu 2 311 0 6092 61 55 7 chr13 48593088 48594403 -71150495 + SVA Other Other 1 1415 0 630 307 43 53 chr13 48596263 48596660 -71148238 - L1MC4a LINE L1 -1926 5882 5490 2169 92 0 0 chr13 48596755 48597036 -71147862 + AluSc SINE Alu 11 291 -18 475 221 387 6 chr13 48597058 48597239 -71147659 - MIR SINE MIR 0 262 13 1771 148 0 49 chr13 48597388 48597526 -71147372 + AluJb SINE Alu 1 144 -168 1960 132 0 22 chr13 48597526 48597845 -71147053 + AluSx SINE Alu 1 312 0 1771 148 0 49 chr13 48597845 48598030 -71146868 + AluJb SINE Alu 144 308 -4 448 260 83 35 chr13 48598822 48598991 -71145907 - MIR SINE MIR -6 256 80 2150 98 3 0 chr13 48599161 48599456 -71145442 + AluSp SINE Alu 1 296 -17 1953 151 0 0 chr13 48600142 48600440 -71144458 + AluJb SINE Alu 2 299 -13 1649 153 25 11 chr13 48600616 48600898 -71144000 + AluSx SINE Alu 1 286 -26 2338 76 0 3 chr13 48601545 48601846 -71143052 - AluSq SINE Alu -13 300 1 2066 132 0 0 chr13 48601876 48602180 -71142718 - AluSx SINE Alu -8 304 1 2031 114 0 0 chr13 48602235 48602515 -71142383 - AluSx SINE Alu -32 280 1 22 0 0 0 chr13 48602700 48602722 -71142176 + AT_rich Low_complexity Low_complexity 1 22 0 2854 143 54 14 chr13 48602727 48603230 -71141668 + L1MB3 LINE L1 5539 6061 -122 5182 115 26 4 chr13 48603231 48603999 -71140899 + L1PA16 LINE L1 5373 6157 -9 2197 76 33 3 chr13 48604002 48604303 -71140595 + AluY SINE Alu 1 310 -1 643 167 0 16 chr13 48604321 48604447 -71140451 + L1MB3 LINE L1 6053 6176 -7 2120 125 46 3 chr13 48606180 48606509 -71138389 + MER2 DNA MER2_type 1 343 -1 2251 80 3 3 chr13 48607438 48607739 -71137159 + AluY SINE Alu 1 301 -10 1747 169 3 13 chr13 48608399 48608700 -71136198 + AluJb SINE Alu 1 298 -14 1278 328 139 33 chr13 48609174 48610292 -71134606 - L2 LINE L2 -528 2786 1550 2160 96 0 0 chr13 48610302 48610609 -71134289 + AluSq SINE Alu 2 308 0 551 167 175 0 chr13 48610768 48610888 -71134010 - L1M4 LINE L1 -627 5557 5417 1878 116 20 14 chr13 48610991 48611283 -71133615 + AluJo SINE Alu 1 294 -18 276 30 0 0 chr13 48611477 48611510 -71133388 + (TG)n Simple_repeat Simple_repeat 2 34 0 2016 113 3 10 chr13 48611650 48611943 -71132955 - AluSg SINE Alu -19 291 1 24 0 0 0 chr13 48613753 48613777 -71131121 + GC_rich Low_complexity Low_complexity 1 24 0 279 236 0 45 chr13 48614291 48614380 -71130518 - MIR3 SINE MIR -15 193 109 327 243 38 2 chr13 48614879 48614990 -71129908 + MER67B LTR ERV1 352 661 0 180 247 0 130 chr13 48615012 48615089 -71129809 + L2 LINE L2 2995 3061 -211 230 257 284 28 chr13 48615212 48615321 -71129577 + L2 LINE L2 3172 3308 -5 181 244 0 110 chr13 48615477 48615559 -71129339 - L2 LINE L2 -14 3258 3186 1846 138 39 0 chr13 48615810 48616092 -71128806 + AluSx SINE Alu 6 298 -14 831 176 0 0 chr13 48616268 48616404 -71128494 + FLAM_C SINE Alu 2 137 -6 1554 175 10 30 chr13 48616511 48616814 -71128084 - AluJo SINE Alu -15 297 1 2152 122 0 0 chr13 48617011 48617314 -71127584 + AluSx SINE Alu 3 305 -7 1746 174 0 3 chr13 48617355 48617665 -71127233 - AluJo SINE Alu -3 309 1 1694 118 3 96 chr13 48618118 48618440 -71126458 + AluSq SINE Alu 1 292 -21 399 211 26 18 chr13 48618451 48618559 -71126339 + L1MC4 LINE L1 7466 7675 -367 853 181 0 19 chr13 48618559 48618719 -71126179 - FRAM SINE Alu -19 157 1 289 264 76 61 chr13 48618732 48618855 -71126043 + L1MC5 LINE L1 7579 7699 -343 1793 148 29 0 chr13 48618855 48619172 -71125726 + AluJo SINE Alu 1 325 0 289 264 76 61 chr13 48619172 48619328 -71125570 + L1MC5 LINE L1 7699 7968 -74 1672 137 108 0 chr13 48619362 48619640 -71125258 - AluSg SINE Alu -2 308 1 371 264 11 0 chr13 48619729 48619816 -71125082 - L2 LINE L2 0 3272 3185 500 286 93 6 chr13 48619843 48620004 -71124894 + LTR16A LTR ERVL 18 192 -258 5313 68 32 56 chr13 48620233 48621192 -71123706 + SVA Other Other 17 868 -645 8117 193 85 113 chr13 48621294 48622160 -71122738 + MER66A-int LTR ERV1 2504 3393 -3283 1944 135 0 0 chr13 48622160 48622487 -71122411 + AluSq SINE Alu 1 327 0 8117 193 85 113 chr13 48622487 48622681 -71122217 + MER66A-int LTR ERV1 3393 3591 -3085 1689 168 14 0 chr13 48622681 48622961 -71121937 + AluJb SINE Alu 1 284 -28 360 0 0 0 chr13 48622961 48623001 -71121897 + (CAAT)n Simple_repeat Simple_repeat 2 41 0 8117 193 85 113 chr13 48623001 48623499 -71121399 + MER66A-int LTR ERV1 3590 4100 -2576 2112 108 3 13 chr13 48623499 48623813 -71121085 + AluSx SINE Alu 2 312 0 8117 193 85 113 chr13 48623813 48624116 -71120782 + MER66A-int LTR ERV1 4100 4410 -2266 2336 88 0 0 chr13 48624116 48624421 -71120477 - AluSc SINE Alu -4 305 1 8117 193 85 113 chr13 48624421 48625060 -71119838 + MER66A-int LTR ERV1 4410 4941 -1735 1611 162 31 45 chr13 48625049 48625307 -71119591 + MER66A-int LTR ERV1 6390 6645 -31 * 2283 98 0 0 chr13 48625307 48625612 -71119286 + AluSq SINE Alu 1 305 -8 1611 162 31 45 chr13 48625612 48625643 -71119255 + MER66A-int LTR ERV1 6645 6675 -1 1287 200 108 53 chr13 48625711 48626132 -71118766 + MER66A LTR ERV1 99 462 -16 1589 121 4 12 chr13 48626139 48626388 -71118510 + AluJb SINE Alu 58 304 -8 2165 115 3 0 chr13 48626390 48626702 -71118196 + AluSq SINE Alu 1 313 0 2207 142 65 70 chr13 48626929 48627387 -71117511 - MER31B LTR ERV1 -8 458 3 191 146 24 0 chr13 48628340 48628381 -71116517 + T-rich Low_complexity Low_complexity 3 44 0 428 301 46 20 chr13 48628812 48628965 -71115933 - L1 LINE L1 -2678 3468 3312 33 0 0 0 chr13 48629244 48629277 -71115621 + AT_rich Low_complexity Low_complexity 1 33 0 1261 85 0 6 chr13 48629277 48629441 -71115457 - AluSq SINE Alu -150 163 1 2616 93 14 19 chr13 48629513 48629879 -71115019 + THE1B LTR MaLR 1 364 0 389 283 66 0 chr13 48629923 48630029 -71114869 + MIR3 SINE MIR 50 162 -46 * 667 226 75 0 chr13 48630027 48630173 -71114725 - MIR SINE MIR 0 262 106 2143 109 3 0 chr13 48630766 48631068 -71113830 + AluSx SINE Alu 1 303 -9 1392 170 130 4 chr13 48631157 48631410 -71113488 - AluJo SINE Alu -14 288 4 2009 134 0 3 chr13 48631781 48632080 -71112818 + AluSx SINE Alu 1 298 -14 4304 156 84 82 chr13 48632095 48632671 -71112227 - L1MC3 LINE L1 -1 7784 7211 258 323 0 0 chr13 48632671 48632764 -71112134 - MLT1F1 LTR MaLR -442 125 33 4304 156 84 82 chr13 48632764 48632896 -71112002 - L1MC3 LINE L1 -574 7211 7081 2162 116 0 0 chr13 48632896 48633199 -71111699 - AluSx SINE Alu -9 303 1 4304 156 84 82 chr13 48633199 48633551 -71111347 - L1MC3 LINE L1 -704 7081 6629 404 242 166 6 chr13 48633889 48634046 -71110852 + LTR33A LTR ERVL 298 479 -44 186 43 0 0 chr13 48634896 48634919 -71109979 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 777 128 0 0 chr13 48634931 48635040 -71109858 - FLAM_C SINE Alu -33 110 2 2219 75 24 0 chr13 48635052 48635345 -71109553 - AluY SINE Alu -11 300 1 433 239 85 85 chr13 48635927 48636186 -71108712 + MER102b DNA MER1_type 66 324 -17 348 24 0 0 chr13 48636248 48636289 -71108609 + (CA)n Simple_repeat Simple_repeat 2 42 0 303 262 145 29 chr13 48636302 48636474 -71108424 + L2 LINE L2 2870 3061 -211 771 150 277 33 chr13 48636603 48636816 -71108082 - ORSL DNA AcHobo -4 271 7 1841 146 0 10 chr13 48636816 48637110 -71107788 + AluSx SINE Alu 1 291 -21 684 288 54 21 chr13 48637174 48637414 -71107484 - MLT1J LTR MaLR -261 250 3 721 235 24 18 chr13 48637441 48637611 -71107287 - MLT1F LTR MaLR -353 189 19 667 254 177 4 chr13 48637919 48638167 -71106731 - L2 LINE L2 -56 3257 2967 1077 145 0 6 chr13 48638167 48638333 -71106565 + AluSp SINE Alu 1 165 -148 2023 115 30 0 chr13 48638618 48638913 -71105985 + AluSx SINE Alu 1 304 -8 331 281 117 12 chr13 48638913 48639084 -71105814 - L2 LINE L2 -1808 1506 1318 493 191 161 56 chr13 48639125 48639287 -71105611 - MER5A DNA MER1_type 0 189 11 1349 173 38 125 chr13 48639301 48639701 -71105197 + MLT1A1 LTR MaLR 1 365 0 423 288 245 0 chr13 48639721 48639954 -71104944 - L2 LINE L2 -2058 1256 967 685 111 0 10 chr13 48639956 48640055 -71104843 + MER4A LTR ERV1 1 98 -566 1629 126 3 83 chr13 48640055 48640389 -71104509 + MER4A LTR ERV1 261 643 -21 1010 299 107 13 chr13 48640393 48640787 -71104111 - L2 LINE L2 -2352 962 532 451 289 101 7 chr13 48640845 48640994 -71103904 - L2 LINE L2 -547 2767 2605 1013 147 18 6 chr13 48640997 48641167 -71103731 + MER5A DNA MER1_type 5 176 -13 2141 107 0 7 chr13 48641744 48642054 -71102844 - AluSg1 SINE Alu -1 308 1 430 313 82 13 chr13 48642411 48642638 -71102260 - MIR SINE MIR 0 262 15 2149 125 0 0 chr13 48642990 48643301 -71101597 + AluSx SINE Alu 1 311 -1 2199 62 13 16 chr13 48643359 48643663 -71101235 - AluY SINE Alu -8 303 1 1276 50 12 0 chr13 48643942 48644102 -71100796 + AluY SINE Alu 1 162 -149 225 0 0 0 chr13 48644117 48644142 -71100756 + (A)n Simple_repeat Simple_repeat 1 25 0 321 245 174 11 chr13 48644867 48644979 -71099919 + MIR SINE MIR 36 151 -72 273 236 0 0 chr13 48645453 48645508 -71099390 - L2 LINE L2 -8 3264 3210 1795 119 22 35 chr13 48645542 48645854 -71099044 + AluJo SINE Alu 1 308 -4 696 213 21 0 chr13 48646014 48646155 -71098743 - MLT1B LTR MaLR -246 144 1 897 147 0 0 chr13 48646168 48646297 -71098601 - FLAM_C SINE Alu -4 129 1 282 190 15 198 chr13 48646359 48646422 -71098476 - MER5B DNA MER1_type 0 178 105 2335 101 0 0 chr13 48646422 48646720 -71098178 + AluSx SINE Alu 1 298 -14 282 190 15 198 chr13 48646720 48646878 -71098020 - MER5B DNA MER1_type -73 105 1 2248 117 3 0 chr13 48647014 48647321 -71097577 - AluSg SINE Alu -2 308 1 451 304 89 69 chr13 48648091 48648533 -71096365 + L1MEc LINE L1 946 1378 -1198 1827 178 13 3 chr13 48648533 48648831 -71096067 + AluJb SINE Alu 1 301 -11 451 304 89 69 chr13 48648831 48648931 -71095967 + L1MEc LINE L1 1378 1475 -1101 2104 123 0 13 chr13 48648931 48649232 -71095666 - AluSx SINE Alu -15 297 1 451 304 89 69 chr13 48649232 48649280 -71095618 + L1MEc LINE L1 1475 1610 -966 1546 212 6 10 chr13 48649283 48649594 -71095304 + AluJo SINE Alu 1 310 -2 216 97 0 0 chr13 48649597 48649628 -71095270 + (A)n Simple_repeat Simple_repeat 1 31 0 2172 117 0 0 chr13 48649686 48650014 -71094884 - AluSc SINE Alu 0 328 1 2031 143 0 3 chr13 48650016 48650310 -71094588 - AluSx SINE Alu -19 293 1 1599 216 14 0 chr13 48650349 48650646 -71094252 - MER66A-int LTR ERV1 -3429 3247 2947 3034 209 20 8 chr13 48650749 48651343 -71093555 - MER66A-int LTR ERV1 -3743 2933 2333 * 4160 189 67 23 chr13 48651328 48653262 -71091636 - MER66A-int LTR ERV1 -4507 2169 65 1493 209 85 79 chr13 48653407 48653949 -71090949 - MER66A LTR ERV1 0 478 97 370 288 72 7 chr13 48653999 48654152 -71090746 - MIR SINE MIR -70 192 30 2535 54 0 7 chr13 48655530 48655828 -71089070 + AluY SINE Alu 1 296 -15 380 235 37 0 chr13 48656018 48656099 -71088799 + Tigger3(Golem) DNA MER2_type 1 84 -2945 1101 141 0 0 chr13 48656157 48656168 -71088730 - AluSg SINE Alu -154 156 146 1557 178 8 0 chr13 48656168 48656426 -71088472 - AluSx SINE Alu -52 260 1 1101 141 0 0 chr13 48656426 48656570 -71088328 - AluSg SINE Alu -163 147 1 12580 94 65 47 chr13 48656570 48657263 -71087635 + LOR1-int LTR ERV1 603 1282 -6838 1845 120 88 7 chr13 48657263 48657547 -71087351 + AluSg SINE Alu 1 307 -3 12580 94 65 47 chr13 48657547 48658603 -71086295 + LOR1-int LTR ERV1 1282 2402 -5718 1898 143 58 0 chr13 48658603 48658896 -71086002 - AluSg SINE Alu 0 310 1 12580 94 65 47 chr13 48658896 48659323 -71085575 + LOR1-int LTR ERV1 2402 2820 -5300 2127 204 78 5 chr13 48659456 48659877 -71085021 + MER82 DNA MER2_type 202 653 0 671 141 8 41 chr13 48660003 48660124 -71084774 + FLAM_A SINE Alu 20 136 -6 309 346 56 26 chr13 48660124 48660358 -71084540 + L3b LINE CR1 1259 1499 -84 2121 132 7 0 chr13 48660812 48661122 -71083776 + AluSx SINE Alu 1 312 0 258 307 0 0 chr13 48661803 48661878 -71083020 + HsTC2 DNA Tc2 44 118 -1780 * 294 178 0 0 chr13 48661876 48661921 -71082977 + HsTC2 DNA Tc2 1242 1286 -612 5551 133 4 55 chr13 48662644 48664208 -71080690 + L1PA14 LINE L1 4661 6143 -18 257 184 0 0 chr13 48664218 48664267 -71080631 + L1M LINE L1 5320 5368 -936 2021 131 3 10 chr13 48664269 48664566 -71080332 + AluSx SINE Alu 1 295 -17 15278 63 7 2 chr13 48665001 48666970 -71077928 + L1P LINE L1 2605 4581 -1565 237 283 72 72 chr13 48667175 48667341 -71077557 + MLT1K LTR MaLR 413 578 -10 2205 106 17 3 chr13 48667753 48668054 -71076844 + AluSx SINE Alu 1 305 -7 2037 125 0 14 chr13 48668233 48668521 -71076377 + AluSx SINE Alu 1 284 -28 4210 100 24 3 chr13 48669558 48670137 -71074761 + MER51A LTR ERV1 1 591 -43 6614 65 3 43 chr13 48670165 48671092 -71073806 + SVA Other Other 497 1386 0 2276 108 3 3 chr13 48671128 48671433 -71073465 + AluSx SINE Alu 8 312 0 726 201 67 12 chr13 48671435 48671599 -71073299 + LTR16A LTR ERVL 206 378 -72 2477 305 47 34 chr13 48671609 48672237 -71072661 + ERVL LTR ERVL 4057 4675 -1089 5251 59 6 0 chr13 48672237 48672880 -71072018 + L1PA8 LINE L1 5521 6167 -5 2477 305 47 34 chr13 48672880 48673479 -71071419 + ERVL LTR ERVL 4675 5300 -464 2105 145 92 36 chr13 48673653 48674046 -71070852 - MSTB LTR MaLR 0 426 12 251 211 18 18 chr13 48674086 48674143 -71070755 + LTR16A LTR ERVL 96 152 -298 423 231 77 17 chr13 48674177 48674294 -71070604 + LTR16A LTR ERVL 327 450 0 281 329 47 20 chr13 48674399 48674548 -71070350 - L2 LINE L2 -220 3052 2900 1739 131 37 0 chr13 48674589 48674834 -71070064 + AluSx SINE Alu 1 254 -58 1363 179 38 4 chr13 48674834 48675069 -71069829 - AluJb SINE Alu -69 243 1 388 314 0 16 chr13 48675076 48675200 -71069698 - L2 LINE L2 -540 2774 2653 2171 127 0 10 chr13 48675226 48675534 -71069364 + AluSc SINE Alu 5 309 0 1773 263 80 50 chr13 48675542 48675867 -71069031 + MER115 DNA AcHobo 114 428 -265 8688 44 0 0 chr13 48675867 48676836 -71068062 + LTR5 LTR ERVK 1 969 0 1773 263 80 50 chr13 48676836 48676947 -71067951 + MER115 DNA AcHobo 428 534 -159 1752 178 3 26 chr13 48676947 48677251 -71067647 + AluJb SINE Alu 1 297 -15 1773 263 80 50 chr13 48677251 48677376 -71067522 + MER115 DNA AcHobo 534 693 0 448 305 54 12 chr13 48677390 48677623 -71067275 + L1MEc LINE L1 1685 1972 -815 2174 117 7 7 chr13 48677623 48677921 -71066977 - AluSx SINE Alu -14 298 1 448 305 54 12 chr13 48677921 48677938 -71066960 + L1MEc LINE L1 1972 1987 -800 768 146 0 23 chr13 48678191 48678321 -71066577 - FLAM_C SINE Alu -6 137 11 22 0 0 0 chr13 48678336 48678358 -71066540 + AT_rich Low_complexity Low_complexity 1 22 0 2508 64 3 0 chr13 48678502 48678800 -71066098 - AluY SINE Alu -12 299 1 884 147 45 51 chr13 48679361 48679391 -71065507 + FAM SINE Alu 1 4294967192 -289 2888 180 68 62 chr13 48679391 48679735 -71065163 - LTR8A LTR ERV1 0 727 386 2448 82 0 13 chr13 48679735 48680050 -71064848 + AluY SINE Alu 1 311 0 2888 180 68 62 chr13 48680050 48680428 -71064470 - LTR8A LTR ERV1 -341 386 1 884 147 45 51 chr13 48680428 48680574 -71064324 + FAM SINE Alu -105 40 -9 963 227 154 18 chr13 48681017 48681186 -71063712 - MLT1J2 LTR MaLR -125 325 180 4638 125 25 11 chr13 48681186 48681906 -71062992 + MER50 LTR ERV1 1 730 -4 963 227 154 18 chr13 48681906 48682022 -71062876 - MLT1J2 LTR MaLR -270 180 1 293 171 57 14 chr13 48682033 48682103 -71062795 - MIR SINE MIR -70 192 120 387 154 0 0 chr13 48682107 48682189 -71062709 - L1MA4A LINE L1 -1 6276 6074 1473 189 0 0 chr13 48682243 48682476 -71062422 - AluJb SINE Alu -77 235 3 382 336 0 0 chr13 48682477 48682587 -71062311 - MIR SINE MIR -133 129 20 2253 103 16 13 chr13 48682820 48682951 -71061947 + AluSx SINE Alu 1 130 -182 2419 80 0 17 chr13 48682951 48683250 -71061648 + AluSp SINE Alu 1 294 -19 2253 103 16 13 chr13 48683250 48683429 -71061469 + AluSx SINE Alu 130 312 0 1981 121 15 0 chr13 48683547 48683819 -71061079 + AluSx SINE Alu 5 280 -32 204 40 0 0 chr13 48683820 48683845 -71061053 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 443 190 197 42 chr13 48683876 48684018 -71060880 + MLT1J2 LTR MaLR 162 325 -125 875 164 0 0 chr13 48684451 48684585 -71060313 + AluJo SINE Alu 1 134 -178 854 134 0 0 chr13 48684868 48684987 -71059911 - AluSg/x SINE Alu -20 290 172 1532 123 19 0 chr13 48684987 48685199 -71059699 - AluSx SINE Alu -96 216 1 1341 151 106 70 chr13 48686245 48686529 -71058369 - AluJo SINE Alu -18 294 1 250 307 0 0 chr13 48686793 48686868 -71058030 + L1M4 LINE L1 3986 4060 -2086 1716 246 55 50 chr13 48686888 48687469 -71057429 + MLT1G LTR MaLR 7 590 0 348 289 127 12 chr13 48687474 48687820 -71057078 + L1M4 LINE L1 4075 4460 -1686 491 269 33 61 chr13 48688067 48688279 -71056619 + L1ME LINE L1 255 460 -5610 * 1138 229 46 134 chr13 48688270 48688774 -71056124 + L1ME LINE L1 116 553 -5517 2242 77 40 10 chr13 48688774 48689073 -71055825 - AluY SINE Alu -3 308 1 1138 229 46 134 chr13 48689073 48689382 -71055516 + L1ME LINE L1 553 888 -5182 411 257 49 83 chr13 48689387 48689593 -71055305 + L1M4 LINE L1 4474 4663 -1483 2208 113 10 0 chr13 48689593 48689884 -71055014 + AluSx SINE Alu 1 294 -18 411 257 49 83 chr13 48689884 48690062 -71054836 + L1M4 LINE L1 4663 4845 -1301 2319 177 40 42 chr13 48690214 48690717 -71054181 - L1MA10 LINE L1 -10 6324 5823 347 113 0 0 chr13 48690717 48690770 -71054128 - AluSx SINE Alu -1 300 248 1463 92 22 0 chr13 48690770 48690955 -71053943 - AluSx SINE Alu -123 189 1 1538 139 0 0 chr13 48690986 48691195 -71053703 + AluSg SINE Alu 2 210 -100 650 220 43 10 chr13 48691195 48691404 -71053494 + HAL1 LINE L1 1050 1265 -1242 1900 136 4 0 chr13 48691411 48691683 -71053215 + AluSx SINE Alu 1 273 -39 397 191 55 9 chr13 48691715 48691825 -71053073 - MIR SINE MIR -58 204 90 648 221 0 43 chr13 48691830 48691970 -71052928 - FLAM_C SINE Alu -4 139 6 2109 120 0 0 chr13 48692090 48692396 -71052502 - AluSx SINE Alu 0 306 1 1637 113 25 119 chr13 48693758 48694076 -71050822 + AluSx SINE Alu 1 288 -24 378 240 60 160 chr13 48694087 48694176 -71050722 - MIR3 SINE MIR -10 198 138 1614 151 10 67 chr13 48694176 48694475 -71050423 + AluJo SINE Alu 1 282 -30 378 240 60 160 chr13 48694475 48694585 -71050313 - MIR3 SINE MIR -70 138 19 235 268 155 54 chr13 48694858 48695026 -71049872 + MLT1L LTR MaLR 1 185 -430 2131 130 0 7 chr13 48695147 48695446 -71049452 - AluSq SINE Alu -16 297 1 560 265 48 32 chr13 48695514 48695703 -71049195 + MLT1L LTR MaLR 411 602 -13 270 233 93 0 chr13 48695707 48695793 -71049105 + MIR SINE MIR 107 200 -62 2302 110 0 3 chr13 48696127 48696437 -71048461 - AluSg SINE Alu -1 309 1 239 296 12 0 chr13 48696437 48696518 -71048380 + L1ME LINE L1 5603 5684 -437 2354 67 24 7 chr13 48696641 48696939 -71047959 + AluY SINE Alu 1 303 -8 713 43 0 11 chr13 48697673 48697767 -71047131 + (TTATA)n Simple_repeat Simple_repeat 5 97 0 1837 152 0 14 chr13 48697768 48698064 -71046834 - AluJo SINE Alu -20 292 1 2349 58 3 0 chr13 48698101 48698395 -71046503 + AluY SINE Alu 1 295 -16 374 229 26 52 chr13 48698839 48698992 -71045906 - MER20B DNA MER1_type -19 764 616 261 0 0 0 chr13 48698998 48699027 -71045871 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1312 133 35 0 chr13 48699030 48699233 -71045665 - AluJo SINE Alu -30 282 73 400 197 0 40 chr13 48699344 48699420 -71045478 - AluJo SINE Alu -228 74 2 * 1520 248 45 73 chr13 48699420 48699788 -71045110 - MER20B DNA MER1_type -169 614 263 2028 107 0 0 chr13 48699788 48700128 -71044770 - AluSg SINE Alu 0 340 1 1520 248 45 73 chr13 48700128 48700291 -71044607 - MER20B DNA MER1_type -520 263 97 641 271 42 47 chr13 48701820 48702012 -71042886 - MIR SINE MIR -28 234 44 2109 66 0 0 chr13 48703169 48703428 -71041470 - AluSc SINE Alu -12 297 39 210 71 0 0 chr13 48703614 48703642 -71041256 + (T)n Simple_repeat Simple_repeat 1 28 0 2079 124 0 0 chr13 48703655 48703953 -71040945 + AluSx SINE Alu 1 298 -14 1692 164 4 0 chr13 48703960 48704240 -71040658 - AluJb SINE Alu -30 282 2 2225 103 0 0 chr13 48704421 48704731 -71040167 - AluSg SINE Alu 0 310 1 904 154 143 0 chr13 48704759 48704934 -71039964 + AluSg/x SINE Alu 84 283 -27 217 0 61 0 chr13 48704939 48704972 -71039926 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1746 122 13 55 chr13 48705655 48705966 -71038932 + AluSx SINE Alu 1 298 -14 945 129 0 0 chr13 48705967 48706157 -71038741 + AluJb SINE Alu 142 331 0 1772 133 35 90 chr13 48706268 48706636 -71038262 + MER7A DNA MER2_type 1 346 0 742 144 0 24 chr13 48707090 48707215 -71037683 - FLAM_C SINE Alu -19 124 3 1679 139 31 17 chr13 48707977 48708292 -71036606 + AluJo SINE Alu 1 312 0 1594 143 16 0 chr13 48708448 48708699 -71036199 + AluSx SINE Alu 45 299 -13 26 50 0 0 chr13 48709052 48709092 -71035806 + AT_rich Low_complexity Low_complexity 1 40 0 210 268 18 0 chr13 48709485 48709541 -71035357 - L3 LINE CR1 -162 1415 1359 230 314 57 14 chr13 48709672 48709742 -71035156 - L2 LINE L2 -37 3276 3204 549 274 104 38 chr13 48709815 48710027 -71034871 - MIR SINE MIR -14 248 23 705 301 59 80 chr13 48710697 48711143 -71033755 - L1MEd LINE L1 -5364 755 328 2136 103 0 7 chr13 48711143 48711443 -71033455 + AluSg SINE Alu 3 300 -10 705 301 59 80 chr13 48711443 48711721 -71033177 - L1MEd LINE L1 -5791 328 46 4420 101 23 3 chr13 48712255 48712861 -71032037 - MER51A LTR ERV1 -16 618 1 1701 159 7 3 chr13 48713994 48714290 -71030608 - AluJb SINE Alu -10 302 6 709 141 17 85 chr13 48714296 48714322 -71030576 + MER67C LTR ERV1 8 34 -676 917 179 41 9 chr13 48714322 48714540 -71030358 + L1MA4 LINE L1 6072 6296 -4 709 141 17 85 chr13 48714540 48714690 -71030208 + MER67C LTR ERV1 34 172 -538 666 238 12 12 chr13 48714691 48714859 -71030039 + FRAM SINE Alu 1 168 -8 2875 180 49 9 chr13 48714859 48715393 -71029505 + MER67C LTR ERV1 156 710 0 405 0 0 0 chr13 48715696 48715741 -71029157 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1415 162 7 57 chr13 48715744 48715914 -71028984 - AluJo SINE Alu -30 282 132 2053 115 0 10 chr13 48715914 48716210 -71028688 + AluSp SINE Alu 1 293 -20 1415 162 7 57 chr13 48716210 48716336 -71028562 - AluJo SINE Alu -180 132 1 561 298 35 29 chr13 48716924 48717095 -71027803 + MIR SINE MIR 21 192 -70 1526 171 7 20 chr13 48717149 48717441 -71027457 - AluJo SINE Alu -24 288 1 192 293 40 91 chr13 48717456 48717555 -71027343 - L2 LINE L2 -38 3234 3141 281 226 0 128 chr13 48718458 48718560 -71026338 - LTR33 LTR ERVL -432 89 1 599 175 0 47 chr13 48719211 48719447 -71025451 + GA-rich Low_complexity Low_complexity 1 224 0 278 289 0 40 chr13 48719447 48719466 -71025432 + polypurine Low_complexity Low_complexity 1 72 0 1969 148 3 0 chr13 48719466 48719831 -71025067 + AluSx SINE Alu 1 366 0 214 151 0 75 chr13 48719856 48719909 -71024989 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 387 285 199 5 chr13 48720092 48720278 -71024620 - MIR SINE MIR -18 244 23 295 271 107 0 chr13 48720357 48720479 -71024419 + HAL1 LINE L1 320 454 -2053 1875 134 6 16 chr13 48720537 48720850 -71024048 + AluJb SINE Alu 1 310 -2 651 276 110 46 chr13 48721087 48721216 -71023682 - L1MC4 LINE L1 -1 8041 7922 2092 139 0 0 chr13 48721216 48721526 -71023372 - AluSx SINE Alu -2 310 1 651 276 110 46 chr13 48721526 48722005 -71022893 - L1MC4 LINE L1 -120 7922 7365 2358 78 0 0 chr13 48722005 48722312 -71022586 - AluY SINE Alu -4 307 1 651 276 110 46 chr13 48722312 48722460 -71022438 - L1MC4 LINE L1 -677 7365 7228 346 233 78 11 chr13 48722509 48722599 -71022299 + HAL1 LINE L1 812 907 -1600 555 276 70 60 chr13 48722599 48722769 -71022129 + HAL1 LINE L1 866 1033 -1474 1793 140 23 30 chr13 48722769 48723069 -71021829 - AluJo SINE Alu -14 298 1 555 276 70 60 chr13 48723069 48723199 -71021699 + HAL1 LINE L1 1033 1160 -1347 2174 119 0 0 chr13 48723199 48723509 -71021389 + AluSg SINE Alu 1 310 0 555 276 70 60 chr13 48723509 48723638 -71021260 + HAL1 LINE L1 1160 1300 -1207 1590 136 81 34 chr13 48723640 48723935 -71020963 + AluJb SINE Alu 1 309 -3 398 156 16 148 chr13 48723950 48724072 -71020826 + L1MA9 LINE L1 6156 6269 -30 25 51 0 0 chr13 48724073 48724112 -71020786 + AT_rich Low_complexity Low_complexity 1 39 0 526 164 229 0 chr13 48724118 48724258 -71020640 + HAL1 LINE L1 1372 1543 -964 2208 109 0 3 chr13 48724261 48724565 -71020333 + AluSx SINE Alu 1 303 -9 1877 140 0 7 chr13 48724576 48724876 -71020022 + AluJo SINE Alu 1 298 -14 2364 49 0 0 chr13 48724879 48725215 -71019683 + AluY SINE Alu 1 336 0 3411 198 94 7 chr13 48725245 48726083 -71018815 + L1MC4a LINE L1 6898 7808 0 1833 234 115 39 chr13 48726086 48726758 -71018140 + HAL1 LINE L1 1553 2275 -232 450 270 0 0 chr13 48727166 48727281 -71017617 + MER103 DNA DNA 2 116 -50 2195 125 0 0 chr13 48728019 48728331 -71016567 + AluSx SINE Alu 1 312 0 243 140 0 0 chr13 48729456 48729506 -71015392 + (G)n Simple_repeat Simple_repeat 1 50 0 1374 168 37 0 chr13 48730321 48730565 -71014333 + AluJo SINE Alu 38 290 -22 299 262 159 19 chr13 48730566 48730673 -71014225 + MIR3 SINE MIR 81 202 -6 1831 145 33 3 chr13 48731224 48731527 -71013371 + AluJb SINE Alu 1 312 0 31 0 0 0 chr13 48731920 48731951 -71012947 + AT_rich Low_complexity Low_complexity 1 31 0 765 192 0 0 chr13 48731951 48732081 -71012817 - FLAM_C SINE Alu -12 131 2 1836 167 16 87 chr13 48732518 48732944 -71011954 - MSTD LTR MaLR 0 396 1 1622 158 16 41 chr13 48733147 48733463 -71011435 + AluJo SINE Alu 3 310 -2 575 215 98 31 chr13 48733534 48733594 -71011304 - MER104 DNA Tc2 -1724 174 119 1429 121 8 163 chr13 48733594 48733957 -71010941 + AluJb SINE Alu 1 307 -5 575 215 98 31 chr13 48733957 48734059 -71010839 - MER104 DNA Tc2 -1779 119 1 28 0 0 0 chr13 48734580 48734608 -71010290 + AT_rich Low_complexity Low_complexity 1 28 0 312 209 9 0 chr13 48734617 48734694 -71010204 + L1MA4A LINE L1 6210 6290 -10 2221 121 108 5 chr13 48734750 48735138 -71009760 - MSTA LTR MaLR 0 428 1 1053 191 39 0 chr13 48735302 48735506 -71009392 + AluJb SINE Alu 86 297 -15 341 204 186 54 chr13 48735506 48735673 -71009225 - L1ME3A LINE L1 -19 6151 5963 841 152 7 0 chr13 48735683 48735821 -71009077 - FLAM_C SINE Alu -4 139 1 1136 200 169 31 chr13 48735821 48735974 -71008924 - L1ME3A LINE L1 -196 5974 5843 1648 153 14 11 chr13 48735974 48736261 -71008637 - AluJb SINE Alu -24 288 1 1136 200 169 31 chr13 48736261 48736427 -71008471 - L1ME3A LINE L1 -327 5843 5611 344 143 14 0 chr13 48736647 48736717 -71008181 + GA-rich Low_complexity Low_complexity 2 72 0 2070 105 3 16 chr13 48738837 48739141 -71005757 - AluSg SINE Alu -10 300 1 1800 158 16 13 chr13 48739470 48739781 -71005117 - AluJb SINE Alu 0 312 1 2267 67 40 0 chr13 48740501 48740798 -71004100 + AluY SINE Alu 1 309 -2 2107 105 0 0 chr13 48740815 48741100 -71003798 + AluSq SINE Alu 1 285 -28 1871 126 16 48 chr13 48741959 48742134 -71002764 - AluSq SINE Alu -13 300 138 2050 110 3 0 chr13 48742134 48742416 -71002482 - AluSx SINE Alu -29 283 1 1871 126 16 48 chr13 48742416 48742550 -71002348 - AluSq SINE Alu -175 138 1 239 320 140 22 chr13 48742587 48742765 -71002133 - L2 LINE L2 -44 3228 3030 2144 199 24 46 chr13 48742765 48743268 -71001630 - LTR53 LTR ERVL 0 519 28 2249 93 0 6 chr13 48743274 48743586 -71001312 + AluY SINE Alu 1 310 -1 1142 112 18 0 chr13 48743586 48743755 -71001143 + AluSg/x SINE Alu 132 303 -7 258 163 23 0 chr13 48743755 48743798 -71001100 - LTR53 LTR ERVL -475 44 1 204 186 186 0 chr13 48743827 48743886 -71001012 - L2 LINE L2 -302 2970 2901 212 317 17 0 chr13 48744365 48744425 -71000473 + MER5A DNA MER1_type 128 188 -1 715 213 0 0 chr13 48744502 48744629 -71000269 - FLAM_A SINE Alu -6 127 1 2347 62 3 3 chr13 48745137 48745441 -70999457 + AluY SINE Alu 1 304 -7 2247 91 0 0 chr13 48745727 48746024 -70998874 - AluY SINE Alu -14 297 1 1174 188 0 5 chr13 48746038 48746261 -70998637 - AluJo SINE Alu -4 308 87 1154 156 72 54 chr13 48746270 48746546 -70998352 - L1MB7 LINE L1 -2 6182 5902 309 241 134 18 chr13 48747723 48747835 -70997063 - HAL1b LINE L1 -519 829 705 1844 152 7 20 chr13 48747982 48748284 -70996614 - AluSx SINE Alu -14 298 1 199 279 0 0 chr13 48748530 48748573 -70996325 + MIR SINE MIR 109 151 -57 222 386 24 24 chr13 48748767 48748894 -70996004 + L2 LINE L2 2966 3092 -180 222 275 120 42 chr13 48749177 48749396 -70995502 + L2 LINE L2 2998 3270 -2 1515 152 54 123 chr13 48749413 48749428 -70995470 + L1MD2 LINE L1 5297 5311 -1048 198 71 0 0 chr13 48749428 48749456 -70995442 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1515 152 54 123 chr13 48749456 48749623 -70995275 + L1MD2 LINE L1 5311 5488 -871 2126 129 3 6 chr13 48749623 48749934 -70994964 + AluSg SINE Alu 1 310 0 1515 152 54 123 chr13 48749934 48750273 -70994625 + L1MD2 LINE L1 5488 5849 -510 2141 129 3 0 chr13 48750273 48750582 -70994316 - AluSx SINE Alu -2 310 1 1515 152 54 123 chr13 48750582 48750808 -70994090 + L1MD2 LINE L1 5849 6089 -270 284 0 28 0 chr13 48750808 48750844 -70994054 + (CA)n Simple_repeat Simple_repeat 2 38 0 1515 152 54 123 chr13 48750844 48750960 -70993938 + L1MD2 LINE L1 6089 6211 -148 2148 97 24 3 chr13 48750960 48751249 -70993649 - AluSq SINE Alu -18 295 1 1515 152 54 123 chr13 48751249 48751387 -70993511 + L1MD2 LINE L1 6211 6358 -1 3813 181 46 36 chr13 48751707 48751908 -70992990 - L1MB3 LINE L1 -66 6117 5919 1541 160 21 108 chr13 48751908 48752289 -70992609 - MER7A DNA MER2_type 0 346 1 3813 181 46 36 chr13 48752289 48752910 -70991988 - L1MB3 LINE L1 -264 5919 5287 2350 69 0 3 chr13 48753155 48753477 -70991421 + AluY SINE Alu 1 321 0 983 108 15 0 chr13 48754472 48754602 -70990296 + AluSx SINE Alu 1 132 -180 2653 141 197 89 chr13 48754611 48755682 -70989216 - pTR5 LTR ERV1 -133 1523 5 1040 152 23 6 chr13 48755694 48755865 -70989033 + AluSx SINE Alu 119 292 -18 1609 166 38 17 chr13 48756358 48756648 -70988250 - AluJo SINE Alu -16 296 1 2210 97 0 10 chr13 48757400 48757699 -70987199 + AluSc SINE Alu 14 309 0 22 0 0 0 chr13 48757865 48757887 -70987011 + AT_rich Low_complexity Low_complexity 1 22 0 2329 98 7 0 chr13 48758141 48758436 -70986462 - AluSx SINE Alu -15 297 1 181 167 48 48 chr13 48759459 48759501 -70985397 - MER5B DNA MER1_type -135 43 2 202 288 106 0 chr13 48759519 48759585 -70985313 - MIR SINE MIR -71 191 119 189 74 0 0 chr13 48759801 48759828 -70985070 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 2050 103 0 4 chr13 48759831 48760104 -70984794 - AluSx SINE Alu -24 288 17 2200 73 7 17 chr13 48760104 48760404 -70984494 + AluY SINE Alu 15 311 0 1012 238 98 22 chr13 48760502 48761120 -70983778 + L1MD3 LINE L1 5449 6161 -5 383 234 57 91 chr13 48761192 48761234 -70983664 + L1M4 LINE L1 4384 4426 -1720 1960 125 7 17 chr13 48761234 48761530 -70983368 + AluSx SINE Alu 1 293 -19 383 234 57 91 chr13 48761530 48761752 -70983146 + L1M4 LINE L1 4426 4639 -1507 1228 130 0 0 chr13 48761757 48761926 -70982972 - AluSg/x SINE Alu -18 294 126 352 325 69 39 chr13 48761990 48762221 -70982677 + L1M4 LINE L1 4689 4926 -1220 231 254 0 0 chr13 48762279 48762342 -70982556 + L1M4 LINE L1 5265 5327 -819 2128 105 32 0 chr13 48762438 48762723 -70982175 + AluSg SINE Alu 1 294 -16 1571 132 45 69 chr13 48763651 48763940 -70980958 - AluJo SINE Alu -22 290 9 383 244 93 138 chr13 48764275 48764631 -70980267 + LTR40a LTR ERVL 1 340 -179 282 188 109 0 chr13 48764640 48764704 -70980194 + LTR40a LTR ERVL 448 518 -1 233 189 94 19 chr13 48764749 48764802 -70980096 + L2 LINE L2 2718 2774 -540 2597 62 0 0 chr13 48765283 48765588 -70979310 + AluY SINE Alu 1 305 -6 2126 126 3 0 chr13 48766196 48766489 -70978409 - AluSg SINE Alu -13 297 4 2197 109 0 22 chr13 48766721 48767032 -70977866 + AluSx SINE Alu 9 312 0 216 97 0 0 chr13 48767318 48767349 -70977549 + (TG)n Simple_repeat Simple_repeat 1 31 0 409 265 169 5 chr13 48767462 48767651 -70977247 + MIR SINE MIR 21 240 -22 23 92 0 0 chr13 48768140 48768205 -70976693 + GC_rich Low_complexity Low_complexity 1 65 0 253 286 22 0 chr13 48768332 48768423 -70976475 + (CGGGG)n Simple_repeat Simple_repeat 5 97 0 4850 69 60 22 chr13 48768913 48768996 -70975902 + PABL_A LTR ERV1 1 79 -581 2543 34 10 0 chr13 48768996 48769291 -70975607 + AluY SINE Alu 1 298 -13 4850 69 60 22 chr13 48769291 48769843 -70975055 + PABL_A LTR ERV1 79 660 0 1236 136 95 66 chr13 48769860 48770172 -70974726 + L1MB2 LINE L1 5855 6171 0 521 253 59 38 chr13 48770222 48770408 -70974490 + L2 LINE L2 3120 3309 -4 858 298 189 43 chr13 48770485 48771547 -70973351 + L2 LINE L2 1758 2974 -340 234 200 53 80 chr13 48771731 48771806 -70973092 + L2 LINE L2 3185 3257 -15 187 326 128 29 chr13 48771954 48772126 -70972772 + L3 LINE CR1 875 1063 -514 1382 153 98 29 chr13 48772332 48772607 -70972291 - AluJb SINE Alu -16 296 3 1288 154 14 32 chr13 48773545 48773766 -70971132 + MER20 DNA MER1_type 1 217 -2 2103 95 42 0 chr13 48773773 48774058 -70970840 + AluSq SINE Alu 1 297 -16 826 137 0 32 chr13 48774426 48774550 -70970348 - FLAM_A SINE Alu -10 123 4 1364 190 15 15 chr13 48774910 48775179 -70969719 + MLT1C LTR MaLR 199 467 0 4993 130 43 26 chr13 48775255 48776025 -70968873 + LTR39 LTR ERV1 1 783 0 21 36 0 0 chr13 48777250 48777278 -70967620 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr13 48778878 48778916 -70965982 + AT_rich Low_complexity Low_complexity 1 38 0 262 341 24 0 chr13 48779592 48779677 -70965221 - MIR SINE MIR -65 143 57 2318 68 0 24 chr13 48779715 48780011 -70964887 - AluY SINE Alu -20 291 3 2384 78 10 3 chr13 48780017 48780325 -70964573 - AluSg SINE Alu 0 310 1 223 333 32 21 chr13 48780877 48780970 -70963928 + MIR SINE MIR 38 131 -77 2168 87 38 10 chr13 48780985 48781341 -70963557 + AluSp SINE Alu 1 313 0 22 0 0 0 chr13 48781387 48781409 -70963489 + AT_rich Low_complexity Low_complexity 1 22 0 283 225 108 27 chr13 48781783 48781894 -70963004 + MER103 DNA DNA 2 121 -45 2280 117 0 0 chr13 48781922 48782221 -70962677 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr13 48782648 48782672 -70962226 + AT_rich Low_complexity Low_complexity 1 24 0 912 137 0 0 chr13 48782694 48782825 -70962073 + FAM SINE Alu 33 163 -22 372 200 109 36 chr13 48783426 48783536 -70961362 - L2 LINE L2 0 3313 3196 2607 55 0 3 chr13 48783585 48783894 -70961004 - AluY SINE Alu -3 308 1 24 0 0 0 chr13 48783951 48783975 -70960923 + AT_rich Low_complexity Low_complexity 1 24 0 341 272 10 0 chr13 48784161 48784264 -70960634 + L1MC4 LINE L1 7932 8035 -7 2516 87 0 0 chr13 48784830 48785140 -70959758 - AluY SINE Alu -1 310 1 2572 173 30 25 chr13 48785144 48785689 -70959209 + L1MB4 LINE L1 5417 5969 -201 2415 74 7 0 chr13 48785966 48786262 -70958636 + AluSg SINE Alu 1 298 -12 2074 125 3 3 chr13 48786825 48787112 -70957786 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr13 48787112 48787133 -70957765 + AT_rich Low_complexity Low_complexity 1 21 0 275 354 164 18 chr13 48787215 48787605 -70957293 - L2 LINE L2 -647 2667 2221 961 243 45 29 chr13 48789001 48789514 -70955384 + L1MC/D LINE L1 1006 1635 -4905 645 301 71 55 chr13 48789641 48790143 -70954755 + L1MC/D LINE L1 2427 2913 -3627 207 0 0 0 chr13 48790143 48790166 -70954732 + (CA)n Simple_repeat Simple_repeat 2 24 0 645 301 71 55 chr13 48790166 48790249 -70954649 + L1MC/D LINE L1 2913 2993 -3547 369 0 0 0 chr13 48790480 48790521 -70954377 + (CA)n Simple_repeat Simple_repeat 2 42 0 2139 141 0 0 chr13 48790545 48790849 -70954049 - AluSx SINE Alu -8 304 1 264 289 0 0 chr13 48790876 48790952 -70953946 + L1P LINE L1 2942 3017 -3129 520 124 0 62 chr13 48790955 48791052 -70953846 + L1MC1 LINE L1 6079 6169 -164 30 45 0 0 chr13 48791619 48791663 -70953235 + AT_rich Low_complexity Low_complexity 1 44 0 309 326 26 17 chr13 48791676 48791909 -70952989 + L1MC/D LINE L1 4078 4312 -2228 1158 227 64 6 chr13 48791996 48792384 -70952514 + L1MC/D LINE L1 5497 5921 -743 942 243 64 12 chr13 48792540 48792791 -70952107 + L1MC/D LINE L1 5937 6200 -2002 533 143 48 0 chr13 48793004 48793088 -70951810 - AluJo SINE Alu -175 137 50 2008 145 3 0 chr13 48793293 48793583 -70951315 - AluSx SINE Alu -21 291 1 230 268 79 55 chr13 48793605 48793769 -70951129 + L2 LINE L2 2078 2245 -1069 1307 104 6 0 chr13 48794122 48794305 -70950593 + AluSg/x SINE Alu 127 310 0 634 238 50 44 chr13 48794455 48794636 -70950262 + MIR SINE MIR 77 258 -4 416 360 81 0 chr13 48794893 48795054 -70949844 + MIR SINE MIR 20 193 -69 381 261 50 39 chr13 48796156 48796297 -70948601 + MIR SINE MIR 42 183 -60 1686 142 98 0 chr13 48797320 48797595 -70947303 + AluSx SINE Alu 1 302 -10 2118 124 7 7 chr13 48797780 48798087 -70946811 + AluSx SINE Alu 1 307 -5 2287 61 0 4 chr13 48798383 48798662 -70946236 + AluY SINE Alu 1 278 -33 180 0 0 0 chr13 48798665 48798685 -70946213 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 198 0 0 0 chr13 48799676 48799698 -70945200 + (A)n Simple_repeat Simple_repeat 1 22 0 21 36 0 0 chr13 48799962 48799990 -70944908 + AT_rich Low_complexity Low_complexity 1 28 0 1812 161 89 83 chr13 48799993 48800135 -70944763 - L1MB8 LINE L1 -2 6176 6036 2284 103 0 0 chr13 48800135 48800426 -70944472 + AluSg1 SINE Alu 1 291 -18 2456 88 3 0 chr13 48800436 48800742 -70944156 + AluSc SINE Alu 1 307 -2 1812 161 89 83 chr13 48800742 48801152 -70943746 - L1MB8 LINE L1 -150 6028 5610 2426 63 0 13 chr13 48801152 48801452 -70943446 - AluY SINE Alu -15 296 1 1645 186 4 0 chr13 48801452 48801732 -70943166 - AluJb SINE Alu -21 291 11 271 241 25 13 chr13 48801744 48801823 -70943075 + MER113 DNA MER1_type? 408 487 -34 2063 143 7 0 chr13 48802492 48802786 -70942112 - AluSx SINE Alu -15 297 2 1748 168 0 34 chr13 48803519 48803817 -70941081 + AluJo SINE Alu 14 301 -11 2327 114 0 0 chr13 48804013 48804320 -70940578 + AluSx SINE Alu 3 309 -3 7537 115 41 33 chr13 48804451 48804799 -70940099 + HSMAR2 DNA Mariner 2 346 -956 2497 64 0 0 chr13 48804799 48805097 -70939801 + AluY SINE Alu 1 298 -13 7537 115 41 33 chr13 48805097 48806036 -70938862 + HSMAR2 DNA Mariner 346 1299 -3 288 305 225 42 chr13 48806328 48806348 -70938550 - MIR SINE MIR 0 262 247 2353 79 13 0 chr13 48806348 48806653 -70938245 + AluY SINE Alu 1 309 -2 288 305 225 42 chr13 48806653 48806845 -70938053 - MIR SINE MIR -15 247 11 368 211 73 28 chr13 48806894 48807003 -70937895 + L1ME3A LINE L1 6042 6155 -15 2153 100 47 3 chr13 48807096 48807395 -70937503 + AluSx SINE Alu 1 312 0 25 0 0 0 chr13 48807441 48807466 -70937432 + AT_rich Low_complexity Low_complexity 1 25 0 1335 32 0 0 chr13 48807466 48807622 -70937276 - L1PA3 LINE L1 -2 6153 5998 2210 92 0 14 chr13 48807632 48807925 -70936973 - AluY SINE Alu -22 289 1 1869 144 0 46 chr13 48807928 48808234 -70936664 - AluJb SINE Alu -20 292 1 2107 131 0 7 chr13 48810128 48810434 -70934464 - AluSx SINE Alu -8 304 1 451 271 125 56 chr13 48810605 48810908 -70933990 + MLT1H LTR MaLR 226 549 0 336 256 43 57 chr13 48810993 48811223 -70933675 - L1M4 LINE L1 -3135 3011 2785 675 215 70 17 chr13 48811385 48811557 -70933341 - MER119 DNA MER1_type -400 183 3 276 100 0 0 chr13 48811745 48811785 -70933113 + (TA)n Simple_repeat Simple_repeat 1 40 0 258 56 0 0 chr13 48811785 48811821 -70933077 + (GA)n Simple_repeat Simple_repeat 1 36 0 546 265 86 60 chr13 48811908 48811972 -70932926 - Charlie2 DNA MER1_type -2307 475 414 2253 88 3 3 chr13 48811972 48812267 -70932631 - AluSp SINE Alu -18 295 1 546 265 86 60 chr13 48812267 48812470 -70932428 - Charlie2 DNA MER1_type -2368 414 201 244 233 82 0 chr13 48812635 48812708 -70932190 - MER116 DNA Mariner -1 79 1 4341 216 65 35 chr13 48813336 48814396 -70930502 - L1MD2 LINE L1 0 6359 5332 525 16 0 0 chr13 48814396 48814458 -70930440 + (TG)n Simple_repeat Simple_repeat 2 63 0 824 211 0 12 chr13 48814458 48814619 -70930279 - FAM SINE Alu -16 159 1 4341 216 65 35 chr13 48814619 48815866 -70929032 - L1MD2 LINE L1 -1026 5333 3962 246 233 50 0 chr13 48816234 48816294 -70928604 + MIR SINE MIR 64 126 -136 255 230 27 40 chr13 48816489 48816563 -70928335 + MER5C DNA MER1_type 4 76 -248 4352 145 65 47 chr13 48816713 48816814 -70928084 - L1MA8 LINE L1 -4 6287 6189 1829 173 17 3 chr13 48816814 48817109 -70927789 + AluSx SINE Alu 1 299 -13 4352 145 65 47 chr13 48817109 48817228 -70927670 - L1MA8 LINE L1 -102 6189 6074 2077 148 77 0 chr13 48817228 48817566 -70927332 + THE1B LTR MaLR 1 364 0 4352 145 65 47 chr13 48817566 48818302 -70926596 - L1MA8 LINE L1 -217 6074 5285 2411 68 0 3 chr13 48818302 48818595 -70926303 - AluY SINE Alu -15 296 5 4352 145 65 47 chr13 48818595 48819067 -70925831 - L1MA8 LINE L1 -1006 5285 4823 1579 165 16 3 chr13 48819293 48819614 -70925284 - L1MA8 LINE L1 -1330 4816 4492 781 229 139 11 chr13 48820805 48821072 -70923826 + L1ME3A LINE L1 5870 6170 0 933 96 0 0 chr13 48821443 48821558 -70923340 - AluSx SINE Alu -137 175 61 331 309 107 34 chr13 48821758 48821936 -70922962 + L2 LINE L2 3005 3195 -118 21 36 0 0 chr13 48822084 48822112 -70922786 + AT_rich Low_complexity Low_complexity 1 28 0 2193 112 10 0 chr13 48822208 48822502 -70922396 - AluSx SINE Alu -15 297 1 21 0 0 0 chr13 48822594 48822615 -70922283 + AT_rich Low_complexity Low_complexity 1 21 0 2439 85 0 0 chr13 48822627 48822934 -70921964 + AluY SINE Alu 1 307 -4 1452 157 56 94 chr13 48823026 48823345 -70921553 + AluJb SINE Alu 1 307 -5 210 242 187 11 chr13 48823557 48823648 -70921250 + MIR SINE MIR 155 261 -1 2117 117 0 16 chr13 48823905 48824221 -70920677 + AluSx SINE Alu 1 311 -1 1937 153 20 3 chr13 48824254 48824555 -70920343 + AluSx SINE Alu 1 306 -6 305 262 0 12 chr13 48824964 48825048 -70919850 + LTR67 LTR ERVL 458 540 -17 248 270 11 11 chr13 48825284 48825373 -70919525 - L1M4 LINE L1 -2319 3827 3739 214 346 59 7 chr13 48826782 48826935 -70917963 + L2 LINE L2 2144 2304 -1010 407 219 42 10 chr13 48827016 48827112 -70917786 + MER58 DNA MER1_type 1 99 -2321 398 184 11 0 chr13 48827128 48827215 -70917683 + MER58 DNA MER1_type 2324 2411 -9 1047 229 106 29 chr13 48827216 48827491 -70917407 + AluJb SINE Alu 1 296 -6 2217 113 0 0 chr13 48827555 48827848 -70917050 + AluSx SINE Alu 1 293 -19 398 259 142 77 chr13 48827979 48828396 -70916502 + L2 LINE L2 2318 2761 -553 1913 146 17 0 chr13 48828472 48828766 -70916132 + AluJo SINE Alu 1 299 -13 2662 52 3 0 chr13 48829592 48829902 -70914996 + AluY SINE Alu 1 311 0 469 289 25 47 chr13 48829950 48830185 -70914713 + HAL1b LINE L1 149 378 -970 255 235 29 0 chr13 48830348 48830416 -70914482 + HAL1b LINE L1 668 737 -611 1786 147 40 25 chr13 48830432 48830758 -70914140 + MER1B DNA MER1_type 9 339 0 1968 140 7 19 chr13 48830860 48831168 -70913730 + AluSx SINE Alu 1 304 -8 1725 257 113 27 chr13 48831258 48832360 -70912538 + L1MD1 LINE L1 2980 4228 -1918 2264 90 13 0 chr13 48832360 48832660 -70912238 + AluSc SINE Alu 1 304 -5 1725 257 113 27 chr13 48832660 48832826 -70912072 + L1MD1 LINE L1 4228 4378 -1768 1674 177 0 20 chr13 48832831 48833131 -70911767 + AluJb SINE Alu 1 294 -18 1583 171 43 21 chr13 48833142 48833423 -70911475 + AluJo SINE Alu 11 297 -15 2446 212 70 22 chr13 48833423 48834537 -70910361 + L1MD1 LINE L1 4504 5704 -538 189 0 0 0 chr13 48834537 48834558 -70910340 + (CA)n Simple_repeat Simple_repeat 2 22 0 2446 212 70 22 chr13 48834558 48834718 -70910180 + L1MD1 LINE L1 5704 5855 -387 617 155 26 0 chr13 48834723 48834839 -70910059 + L1MD1 LINE L1 6108 6226 -16 338 298 126 79 chr13 48835096 48835566 -70909332 + L1MC4a LINE L1 6126 6617 -1191 202 188 58 0 chr13 48835567 48835636 -70909262 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 1428 230 40 89 chr13 48835771 48836187 -70908711 + L1MC5 LINE L1 6749 7184 -777 3444 128 29 6 chr13 48836187 48836702 -70908196 - MER1A DNA MER1_type 0 527 1 1428 230 40 89 chr13 48836702 48836986 -70907912 + L1MC5 LINE L1 7184 7404 -557 1717 164 44 17 chr13 48836986 48837284 -70907614 + AluJb SINE Alu 1 306 -6 1428 230 40 89 chr13 48837284 48837427 -70907471 + L1MC5 LINE L1 7404 7552 -409 469 87 0 14 chr13 48837427 48837496 -70907402 + MLT2B3 LTR ERVL 1 68 -486 585 204 24 22 chr13 48837596 48837800 -70907098 + MLT2B3 LTR ERVL 78 326 -189 9736 31 4 179 chr13 48838047 48839720 -70905178 + SVA Other Other 1 1379 -7 26 0 0 0 chr13 48839720 48839746 -70905152 + AT_rich Low_complexity Low_complexity 1 26 0 494 253 66 50 chr13 48840047 48840418 -70904480 + L1MEd LINE L1 892 1306 -4869 960 98 23 0 chr13 48840498 48840630 -70904268 + AluSq/x SINE Alu 1 135 -177 1778 172 10 10 chr13 48840630 48840933 -70903965 + AluJo SINE Alu 1 303 -9 252 0 0 0 chr13 48840964 48840992 -70903906 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 438 299 236 35 chr13 48841022 48842038 -70902860 + L2 LINE L2 1050 2269 -1045 495 113 65 48 chr13 48842241 48842365 -70902533 - L1MB8 LINE L1 -5 6173 6048 851 110 8 24 chr13 48842365 48842481 -70902417 - FLAM_C SINE Alu -196 116 1 377 220 0 51 chr13 48842482 48842600 -70902298 - L1MB7 LINE L1 -129 6055 5944 210 289 157 31 chr13 48842759 48842918 -70901980 + L2 LINE L2 2244 2422 -892 * 212 286 116 0 chr13 48842916 48843028 -70901870 + MIR SINE MIR 132 256 -6 373 239 134 16 chr13 48843086 48843333 -70901565 - L1MEd LINE L1 -5155 964 689 28 0 0 0 chr13 48843842 48843870 -70901028 + AT_rich Low_complexity Low_complexity 1 28 0 2349 76 10 3 chr13 48843986 48844288 -70900610 + AluSx SINE Alu 7 310 -2 289 191 0 48 chr13 48844332 48844416 -70900482 + L1MA10 LINE L1 6202 6281 -53 388 270 30 0 chr13 48844519 48844619 -70900279 + MIR SINE MIR 63 165 -97 2099 95 0 4 chr13 48844870 48845144 -70899754 + AluSg SINE Alu 27 299 -11 389 262 18 50 chr13 48845210 48845565 -70899333 - L1MEc LINE L1 -3913 2339 2003 495 319 90 32 chr13 48845648 48846024 -70898874 - L1MEc LINE L1 -5663 542 145 3652 192 83 10 chr13 48846124 48847026 -70897872 - L1MB7 LINE L1 -9 6175 5162 1718 183 33 13 chr13 48847026 48847326 -70897572 - AluJb SINE Alu -6 306 1 3652 192 83 10 chr13 48847326 48847669 -70897229 - L1MB7 LINE L1 -1022 5162 4846 228 67 0 0 chr13 48847681 48847711 -70897187 + (A)n Simple_repeat Simple_repeat 1 30 0 949 178 4 54 chr13 48847733 48847974 -70896924 - L1MB7 LINE L1 -1305 4841 4613 212 197 0 33 chr13 48847974 48848035 -70896863 + A-rich Low_complexity Low_complexity 3 61 0 566 166 106 13 chr13 48848047 48848198 -70896700 - L1MB7 LINE L1 -1540 4606 4442 267 175 48 0 chr13 48848234 48848297 -70896601 - L1MB7 LINE L1 -1696 4450 4385 792 175 32 7 chr13 48848308 48848462 -70896436 - AluJb SINE Alu -19 293 136 1414 190 0 101 chr13 48848469 48848806 -70896092 - AluJb SINE Alu -9 303 1 1452 233 22 3 chr13 48848808 48849173 -70895725 - L1MB7 LINE L1 -1780 4366 3995 * 2167 243 47 44 chr13 48849158 48849367 -70895531 + L1ME1 LINE L1 5386 5593 -573 2226 115 0 3 chr13 48849367 48849662 -70895236 + AluSx SINE Alu 1 294 -18 2167 243 47 44 chr13 48849662 48850182 -70894716 + L1ME1 LINE L1 5593 6117 -49 245 257 35 69 chr13 48850076 48850220 -70894678 + L1MA10 LINE L1 6171 6309 -25 * 1781 161 11 3 chr13 48850766 48851051 -70893847 - AluJb SINE Alu -25 287 1 2081 128 6 31 chr13 48851719 48852039 -70892859 + AluSx SINE Alu 1 312 0 954 126 0 7 chr13 48852927 48853062 -70891836 - AluSq/x SINE Alu -178 134 1 1075 115 22 28 chr13 48854179 48854350 -70890548 + MER2 DNA MER2_type 30 201 -144 1562 186 16 33 chr13 48854350 48854656 -70890242 - AluJo SINE Alu -11 301 1 535 214 67 57 chr13 48854898 48855000 -70889898 + L1MC5 LINE L1 7705 7805 -156 2178 136 109 14 chr13 48855000 48855368 -70889530 + MER57A LTR ERV1 1 403 0 535 214 67 57 chr13 48855368 48855475 -70889423 + L1MC5 LINE L1 7805 7916 -45 1315 196 13 0 chr13 48855519 48855754 -70889144 - AluJo SINE Alu -74 238 1 230 298 114 26 chr13 48855834 48855948 -70888950 + MIR3 SINE MIR 70 193 -15 779 216 24 61 chr13 48857009 48857222 -70887676 + MER58A DNA MER1_type 19 223 -1 2394 101 0 3 chr13 48857562 48857868 -70887030 - AluSx SINE Alu -7 305 1 253 302 42 69 chr13 48857948 48858137 -70886761 + L2 LINE L2 2996 3179 -93 262 288 164 46 chr13 48858163 48858382 -70886516 + MIR SINE MIR 18 262 0 580 254 0 0 chr13 48858551 48858665 -70886233 - MER81 DNA DNA 0 114 1 230 212 25 136 chr13 48858672 48858790 -70886108 - LTR67 LTR ERVL -20 537 433 1982 118 61 0 chr13 48859443 48859723 -70885175 + AluJb SINE Alu 1 297 -15 461 200 0 67 chr13 48860269 48860374 -70884524 + MER2 DNA MER2_type 1 98 -247 1467 168 121 0 chr13 48860817 48861073 -70883825 + AluJo SINE Alu 1 287 -25 24 0 0 0 chr13 48861078 48861102 -70883796 + AT_rich Low_complexity Low_complexity 1 24 0 285 215 51 38 chr13 48861207 48861286 -70883612 + MER116 DNA Mariner 1 80 0 581 175 0 0 chr13 48861337 48861440 -70883458 + L1M3 LINE L1 5716 5818 -353 352 298 124 0 chr13 48861616 48861737 -70883161 - L2 LINE L2 0 3272 3137 1046 163 0 0 chr13 48864354 48864520 -70880378 - AluSg/x SINE Alu -13 297 132 2534 65 0 0 chr13 48864520 48864826 -70880072 - AluSx SINE Alu -6 306 1 590 220 60 40 chr13 48864854 48865054 -70879844 + MIR SINE MIR 57 260 -2 426 176 0 0 chr13 48865286 48865354 -70879544 + AluJ/FLAM SINE Alu 3 70 -242 1193 150 0 16 chr13 48865401 48865594 -70879304 + AluJb SINE Alu 88 277 -35 189 0 0 0 chr13 48865595 48865616 -70879282 + (T)n Simple_repeat Simple_repeat 1 21 0 1537 206 7 3 chr13 48867061 48867348 -70877550 + AluJo SINE Alu 1 288 -24 252 221 137 0 chr13 48867351 48867446 -70877452 + MIR SINE MIR 124 231 -31 182 171 0 24 chr13 48867582 48867623 -70877275 - L2 LINE L2 -3 3310 3271 39 50 0 0 chr13 48869233 48869293 -70875605 + GC_rich Low_complexity Low_complexity 1 60 0 183 42 0 0 chr13 48869415 48869439 -70875459 + (CGG)n Simple_repeat Simple_repeat 3 26 0 185 108 27 0 chr13 48869445 48869482 -70875416 + G-rich Low_complexity Low_complexity 5 42 0 332 270 72 72 chr13 48870171 48870393 -70874505 + L2 LINE L2 3083 3304 -9 1946 70 62 37 chr13 48870646 48870953 -70873945 + AluSc SINE Alu 1 314 0 2279 99 3 10 chr13 48871130 48871432 -70873466 + AluSg SINE Alu 1 300 -10 180 0 0 0 chr13 48871504 48871524 -70873374 + (A)n Simple_repeat Simple_repeat 1 20 0 326 255 75 0 chr13 48871661 48871755 -70873143 - Charlie8 DNA MER1_type -2229 188 88 2156 115 3 32 chr13 48871902 48872215 -70872683 + AluSx SINE Alu 1 304 -8 183 309 69 57 chr13 48872909 48873084 -70871814 + L2 LINE L2 2324 2500 -814 652 93 0 0 chr13 48873306 48873392 -70871506 + AluSq SINE Alu 2 87 -225 2457 63 7 3 chr13 48873392 48873692 -70871206 + AluY SINE Alu 1 301 -10 1575 96 5 18 chr13 48873692 48873911 -70870987 + AluSq SINE Alu 73 289 -24 767 217 6 6 chr13 48874508 48874665 -70870233 + MLT1A1 LTR MaLR 1 157 -208 1001 184 0 0 chr13 48874668 48874826 -70870072 + FAM SINE Alu 14 171 -14 227 194 0 0 chr13 48874854 48874890 -70870008 + MLT1A1 LTR MaLR 172 207 -167 * 637 173 116 107 chr13 48874888 48875038 -70869860 + MLT1A1 LTR MaLR 171 299 -66 2408 53 3 0 chr13 48875038 48875356 -70869542 + AluY SINE Alu 1 319 0 637 173 116 107 chr13 48875356 48875407 -70869491 + MLT1A1 LTR MaLR 299 348 -17 207 139 0 0 chr13 48875428 48875464 -70869434 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 21 95 0 0 chr13 48876996 48877059 -70867839 + AT_rich Low_complexity Low_complexity 1 63 0 318 333 93 13 chr13 48877090 48877240 -70867658 + MIR3 SINE MIR 19 180 -28 973 165 0 13 chr13 48877536 48877694 -70867204 + FRAM SINE Alu 1 156 -10 296 347 33 20 chr13 48877960 48878110 -70866788 + L2 LINE L2 3162 3313 0 2116 90 59 0 chr13 48878192 48878482 -70866416 + AluSc SINE Alu 3 309 0 1135 130 0 2 chr13 48878562 48878835 -70866063 + AluSx SINE Alu 9 312 0 1069 131 6 6 chr13 48878838 48879014 -70865884 + L1PA10 LINE L1 5989 6164 -4 568 301 6 0 chr13 48879064 48879240 -70865658 - MIR SINE MIR 0 262 86 2213 103 34 0 chr13 48879896 48880188 -70864710 - AluSq SINE Alu -10 303 2 2034 110 0 0 chr13 48880189 48880452 -70864446 - AluSx SINE Alu -15 297 35 2277 104 0 0 chr13 48880656 48880953 -70863945 + AluSg1 SINE Alu 1 297 -12 322 200 31 0 chr13 48881079 48881091 -70863807 + MER3 DNA MER1_type 37 50 -159 675 176 59 98 chr13 48881091 48881188 -70863710 - MER3 DNA MER1_type -1 208 122 1451 135 67 74 chr13 48881188 48881485 -70863413 + AluJo SINE Alu 1 295 -17 675 176 59 98 chr13 48881485 48881591 -70863307 - MER3 DNA MER1_type -87 122 13 190 347 11 0 chr13 48881645 48881740 -70863158 + MIR SINE MIR 53 148 -114 2403 105 0 3 chr13 48881741 48882087 -70862811 + AluSx SINE Alu 1 345 0 2253 100 0 10 chr13 48882218 48882517 -70862381 + AluSx SINE Alu 1 296 -16 2253 109 0 10 chr13 48883348 48883659 -70861239 + AluSg1 SINE Alu 1 308 -1 877 255 64 10 chr13 48884030 48884267 -70860631 - MIR SINE MIR 0 262 16 267 234 19 103 chr13 48884517 48884624 -70860274 + MLT1K LTR MaLR 429 526 -62 409 255 87 91 chr13 48884688 48884986 -70859912 + MLT1K LTR MaLR 183 479 -109 317 175 30 24 chr13 48884993 48885084 -70859814 - MLT1F1 LTR MaLR -3 592 485 493 287 46 69 chr13 48885089 48885392 -70859506 - MLT1I LTR MaLR -7 402 107 2394 78 10 3 chr13 48885557 48885853 -70859045 - AluSq SINE Alu -15 298 1 963 249 118 33 chr13 48886648 48887013 -70857885 - MLT1L LTR MaLR -26 589 194 853 89 9 0 chr13 48887029 48887141 -70857757 + AluSg/x SINE Alu 179 291 -19 1474 123 30 30 chr13 48887147 48887382 -70857516 - MER46A DNA MER2_type 0 236 2 463 273 8 8 chr13 48887741 48887869 -70857029 - MIR SINE MIR -112 150 23 202 310 0 0 chr13 48888612 48888683 -70856215 - MIR SINE MIR -49 213 143 21 0 0 0 chr13 48888687 48888708 -70856190 + AT_rich Low_complexity Low_complexity 1 21 0 727 169 7 44 chr13 48888714 48888850 -70856048 + AluJo SINE Alu 6 136 -176 206 349 58 0 chr13 48888897 48888983 -70855915 - MIR SINE MIR -66 142 52 353 131 16 0 chr13 48889359 48889420 -70855478 + MER5A DNA MER1_type 42 103 -86 1985 201 19 17 chr13 48890933 48891346 -70853552 + MLT2D LTR ERVL 1 414 0 341 200 95 95 chr13 48892035 48892140 -70852758 + MLT1J2 LTR MaLR 346 450 0 2396 78 0 3 chr13 48892217 48892512 -70852386 + AluSg SINE Alu 1 294 -16 379 194 140 0 chr13 48892659 48892752 -70852146 - MER91C DNA MER1_type -34 106 1 567 123 18 18 chr13 48893109 48893223 -70851675 + CT-rich Low_complexity Low_complexity 4 117 0 2158 111 6 35 chr13 48893228 48893543 -70851355 - AluSx SINE Alu -6 306 1 1786 208 75 73 chr13 48893568 48894007 -70850891 - L1MC5 LINE L1 -39 7922 7480 221 0 35 0 chr13 48894007 48894036 -70850862 + (TTTTC)n Simple_repeat Simple_repeat 4 33 0 1786 208 75 73 chr13 48894036 48894292 -70850606 - L1MC5 LINE L1 -481 7480 7226 1979 184 36 69 chr13 48894342 48894817 -70850081 - L1MC4 LINE L1 -733 7228 6739 186 43 0 0 chr13 48894817 48894840 -70850058 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1624 166 7 35 chr13 48894848 48895008 -70849890 - AluJb SINE Alu -30 282 132 2051 53 7 64 chr13 48895008 48895291 -70849607 - AluY SINE Alu -11 300 34 1624 166 7 35 chr13 48895291 48895420 -70849478 - AluJb SINE Alu -180 132 1 1979 184 36 69 chr13 48895420 48895516 -70849382 - L1MC4 LINE L1 -1229 6732 6697 1899 187 9 11 chr13 48895664 48895917 -70848981 - MER7A DNA MER2_type -2693 345 94 2173 89 22 26 chr13 48895917 48896230 -70848668 + AluSq SINE Alu 1 312 -1 1899 187 9 11 chr13 48896230 48896324 -70848574 - MER7A DNA MER2_type -2944 94 1 2535 54 0 7 chr13 48896514 48896812 -70848086 - AluY SINE Alu -15 296 1 370 288 72 7 chr13 48898190 48898343 -70846555 + MIR SINE MIR 30 192 -70 1493 209 85 79 chr13 48898393 48898935 -70845963 + MER66A LTR ERV1 97 478 0 4160 189 67 23 chr13 48899080 48901014 -70843884 + MER66A-int LTR ERV1 65 2169 -4507 * 9161 190 82 106 chr13 48900999 48902032 -70842866 + MER66A-int LTR ERV1 2333 3390 -3286 1944 135 0 0 chr13 48902032 48902359 -70842539 + AluSq SINE Alu 1 327 0 9161 190 82 106 chr13 48902359 48902553 -70842345 + MER66A-int LTR ERV1 3390 3587 -3089 1689 168 14 0 chr13 48902553 48902833 -70842065 + AluJb SINE Alu 1 284 -28 360 0 0 0 chr13 48902833 48902873 -70842025 + (CAAT)n Simple_repeat Simple_repeat 2 41 0 9161 190 82 106 chr13 48902873 48903371 -70841527 + MER66A-int LTR ERV1 3586 4095 -2581 2112 108 3 13 chr13 48903371 48903685 -70841213 + AluSx SINE Alu 2 312 0 9161 190 82 106 chr13 48903685 48903988 -70840910 + MER66A-int LTR ERV1 4095 4404 -2272 2336 88 0 0 chr13 48903988 48904293 -70840605 - AluSc SINE Alu -4 305 1 9161 190 82 106 chr13 48904293 48904932 -70839966 + MER66A-int LTR ERV1 4404 4941 -1735 1611 162 31 45 chr13 48904921 48905179 -70839719 + MER66A-int LTR ERV1 6390 6645 -31 * 2283 98 0 0 chr13 48905179 48905484 -70839414 + AluSq SINE Alu 1 305 -8 1611 162 31 45 chr13 48905484 48905515 -70839383 + MER66A-int LTR ERV1 6645 6675 -1 1287 200 108 53 chr13 48905583 48906004 -70838894 + MER66A LTR ERV1 99 462 -16 1589 121 4 12 chr13 48906011 48906260 -70838638 + AluJb SINE Alu 58 304 -8 2165 115 3 0 chr13 48906262 48906574 -70838324 + AluSq SINE Alu 1 313 0 2207 142 65 70 chr13 48906801 48907259 -70837639 - MER31B LTR ERV1 -8 458 3 224 239 0 0 chr13 48908212 48908258 -70836640 + T-rich Low_complexity Low_complexity 4 49 0 428 301 46 20 chr13 48908684 48908837 -70836061 - L1 LINE L1 -2678 3468 3312 33 0 0 0 chr13 48909116 48909149 -70835749 + AT_rich Low_complexity Low_complexity 1 33 0 1261 85 0 6 chr13 48909149 48909313 -70835585 - AluSq SINE Alu -150 163 1 2592 90 16 19 chr13 48909385 48909750 -70835148 + THE1B LTR MaLR 1 364 0 389 283 66 0 chr13 48909794 48909900 -70834998 + MIR3 SINE MIR 50 162 -46 * 667 226 75 0 chr13 48909898 48910044 -70834854 - MIR SINE MIR 0 262 106 2143 109 3 0 chr13 48910637 48910939 -70833959 + AluSx SINE Alu 1 303 -9 1392 170 130 4 chr13 48911028 48911281 -70833617 - AluJo SINE Alu -14 288 4 2009 134 0 3 chr13 48911652 48911951 -70832947 + AluSx SINE Alu 1 298 -14 4304 156 84 82 chr13 48911966 48912542 -70832356 - L1MC3 LINE L1 -1 7784 7211 258 323 0 0 chr13 48912542 48912635 -70832263 - MLT1F1 LTR MaLR -442 125 33 4304 156 84 82 chr13 48912635 48912767 -70832131 - L1MC3 LINE L1 -574 7211 7081 2162 116 0 0 chr13 48912767 48913070 -70831828 - AluSx SINE Alu -9 303 1 4304 156 84 82 chr13 48913070 48913422 -70831476 - L1MC3 LINE L1 -704 7081 6629 404 242 166 6 chr13 48913760 48913917 -70830981 + LTR33A LTR ERVL 298 479 -44 186 43 0 0 chr13 48914767 48914790 -70830108 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 777 128 0 0 chr13 48914802 48914911 -70829987 - FLAM_C SINE Alu -33 110 2 2219 75 24 0 chr13 48914923 48915216 -70829682 - AluY SINE Alu -11 300 1 433 239 85 85 chr13 48915798 48916057 -70828841 + MER102a DNA MER1_type 55 313 -17 348 24 0 0 chr13 48916119 48916160 -70828738 + (CA)n Simple_repeat Simple_repeat 2 42 0 303 262 145 29 chr13 48916173 48916345 -70828553 + L2 LINE L2 2870 3061 -211 771 150 277 33 chr13 48916474 48916687 -70828211 - ORSL DNA AcHobo -4 271 7 1841 146 0 10 chr13 48916687 48916981 -70827917 + AluSx SINE Alu 1 291 -21 684 288 54 21 chr13 48917045 48917285 -70827613 - MLT1J LTR MaLR -261 250 3 721 235 24 18 chr13 48917312 48917482 -70827416 - MLT1F LTR MaLR -353 189 19 667 254 177 4 chr13 48917790 48918038 -70826860 - L2 LINE L2 -56 3257 2967 1077 145 0 6 chr13 48918038 48918204 -70826694 + AluSp SINE Alu 1 165 -148 2023 115 30 0 chr13 48918489 48918784 -70826114 + AluSx SINE Alu 1 304 -8 331 281 117 12 chr13 48918784 48918955 -70825943 - L2 LINE L2 -1808 1506 1318 493 191 161 56 chr13 48918996 48919158 -70825740 - MER5A DNA MER1_type 0 189 11 1349 173 38 125 chr13 48919172 48919572 -70825326 + MLT1A1 LTR MaLR 1 365 0 423 288 245 0 chr13 48919592 48919825 -70825073 - L2 LINE L2 -2058 1256 967 685 111 0 10 chr13 48919827 48919926 -70824972 + MER4A LTR ERV1 1 98 -566 1629 126 3 83 chr13 48919926 48920260 -70824638 + MER4A LTR ERV1 261 643 -21 1010 299 107 13 chr13 48920264 48920658 -70824240 - L2 LINE L2 -2352 962 532 451 289 101 7 chr13 48920716 48920865 -70824033 - L2 LINE L2 -547 2767 2605 1013 147 18 6 chr13 48920868 48921038 -70823860 + MER5A DNA MER1_type 5 176 -13 2141 107 0 7 chr13 48921615 48921925 -70822973 - AluSg1 SINE Alu -1 308 1 430 313 82 13 chr13 48922282 48922509 -70822389 - MIR SINE MIR 0 262 15 2149 125 0 0 chr13 48922861 48923172 -70821726 + AluSx SINE Alu 1 311 -1 2156 63 16 16 chr13 48923230 48923533 -70821365 - AluY SINE Alu -8 303 1 1276 50 12 0 chr13 48923812 48923972 -70820926 + AluY SINE Alu 1 162 -149 225 0 0 0 chr13 48923987 48924012 -70820886 + (A)n Simple_repeat Simple_repeat 1 25 0 321 245 174 11 chr13 48924737 48924849 -70820049 + MIR SINE MIR 36 151 -72 273 236 0 0 chr13 48925323 48925378 -70819520 - L2 LINE L2 -8 3264 3210 1795 119 22 35 chr13 48925412 48925724 -70819174 + AluJo SINE Alu 1 308 -4 692 213 21 0 chr13 48925884 48926025 -70818873 - MLT1B LTR MaLR -246 144 1 897 147 0 0 chr13 48926038 48926167 -70818731 - FLAM_C SINE Alu -4 129 1 334 203 14 212 chr13 48926229 48926292 -70818606 - MER5B DNA MER1_type 0 178 104 2205 101 0 0 chr13 48926292 48926590 -70818308 + AluSx SINE Alu 1 298 -14 334 203 14 212 chr13 48926590 48926748 -70818150 - MER5B DNA MER1_type -74 104 1 2124 117 3 0 chr13 48926884 48927191 -70817707 - AluSg SINE Alu -2 308 1 704 279 107 95 chr13 48927808 48928403 -70816495 + L1M2 LINE L1 899 1485 -4731 1713 178 13 3 chr13 48928403 48928701 -70816197 + AluJb SINE Alu 1 301 -11 704 279 107 95 chr13 48928701 48928801 -70816097 + L1M2 LINE L1 1485 1582 -4634 1973 119 0 17 chr13 48928801 48929103 -70815795 - AluSx SINE Alu -15 297 1 704 279 107 95 chr13 48929103 48929154 -70815744 + L1M2 LINE L1 1582 1631 -4585 1437 212 6 10 chr13 48929154 48929465 -70815433 + AluJo SINE Alu 1 310 -2 704 279 107 95 chr13 48929465 48929555 -70815343 + L1M2 LINE L1 1631 1837 -4379 2047 117 0 0 chr13 48929557 48929885 -70815013 - AluSc SINE Alu 0 328 1 1983 129 0 3 chr13 48929887 48930181 -70814717 - AluSx SINE Alu -19 293 1 308 273 69 12 chr13 48930583 48930866 -70814032 + L1ME3 LINE L1 2471 2765 -3775 1362 171 19 31 chr13 48930903 48931160 -70813738 + AluJb SINE Alu 1 254 -58 1213 247 83 53 chr13 48931223 48931434 -70813464 + L1ME3 LINE L1 5613 5816 -740 2339 73 0 3 chr13 48931434 48931734 -70813164 + AluY SINE Alu 3 301 -10 1213 247 83 53 chr13 48931734 48931892 -70813006 + L1ME3 LINE L1 5816 5968 -588 1564 197 123 42 chr13 48931892 48932058 -70812840 + MLT1C LTR MaLR 1 152 -315 2188 109 3 0 chr13 48932058 48932360 -70812538 + AluSq SINE Alu 1 303 -10 1564 197 123 42 chr13 48932360 48932625 -70812273 + MLT1C LTR MaLR 152 467 0 1213 247 83 53 chr13 48932625 48932847 -70812051 + L1ME3 LINE L1 5968 6235 -321 2719 137 41 33 chr13 48932847 48933335 -70811563 - LTR22B LTR ERVK 0 492 1 1213 247 83 53 chr13 48933335 48933441 -70811457 + L1ME3 LINE L1 6235 6336 -220 2218 103 0 0 chr13 48933808 48934109 -70810789 - AluSq SINE Alu -10 303 3 2537 55 0 0 chr13 48934704 48935015 -70809883 - AluY SINE Alu 0 311 1 1024 316 91 32 chr13 48936212 48936687 -70808211 + ERVL LTR ERVL 1338 1840 -3924 337 219 49 49 chr13 48936689 48936771 -70808127 + FRAM/FAM SINE Alu 1 81 -85 636 179 36 100 chr13 48936771 48936807 -70808091 + L1M4 LINE L1 4965 5002 -1144 2068 98 3 20 chr13 48936807 48937112 -70807786 + AluSg SINE Alu 5 304 -6 636 179 36 100 chr13 48937112 48937253 -70807645 + L1M4 LINE L1 5002 5124 -1022 2054 124 13 0 chr13 48937253 48937559 -70807339 + AluSx SINE Alu 1 310 -2 636 179 36 100 chr13 48937559 48937631 -70807267 + L1M4 LINE L1 5124 5199 -947 1183 180 0 5 chr13 48937634 48937840 -70807058 + AluJo SINE Alu 1 205 -107 876 261 23 29 chr13 48937861 48938167 -70806731 + L1ME2 LINE L1 5852 6155 -9 182 235 161 25 chr13 48938264 48938345 -70806553 + L2 LINE L2 3047 3138 -175 345 169 0 0 chr13 48938353 48938412 -70806486 - MSTD LTR MaLR -12 384 326 1916 142 10 0 chr13 48938412 48938700 -70806198 + AluJb SINE Alu 1 291 -21 297 75 0 0 chr13 48938718 48938758 -70806140 + (GAAAA)n Simple_repeat Simple_repeat 2 41 0 1103 51 11 62 chr13 48938767 48938945 -70805953 + MER11A LTR ERVK 1 264 -1002 1705 85 0 30 chr13 48938945 48939181 -70805717 - AluY SINE Alu -82 229 1 437 214 53 121 chr13 48939570 48939809 -70805089 + L1ME3A LINE L1 5797 6051 -119 2198 85 0 7 chr13 48939809 48940103 -70804795 - AluSc SINE Alu -17 292 1 437 214 53 121 chr13 48940103 48940116 -70804782 + L1ME3A LINE L1 6051 6063 -107 990 139 0 61 chr13 48940116 48940296 -70804602 - L1MB5 LINE L1 -6 6168 6000 437 214 53 121 chr13 48940296 48940347 -70804551 + L1ME3A LINE L1 6063 6157 -13 922 284 80 69 chr13 48940359 48941060 -70803838 - L2 LINE L2 -2282 1032 261 1388 198 171 20 chr13 48941388 48941732 -70803166 + MSTD LTR MaLR 1 396 0 2149 92 0 0 chr13 48941831 48942136 -70802762 + AluY SINE Alu 1 305 0 3419 201 57 22 chr13 48942204 48943064 -70801834 + L1ME1 LINE L1 5221 6108 -58 738 238 0 0 chr13 48943069 48943216 -70801682 + FRAM SINE Alu 5 151 -25 1400 187 26 4 chr13 48943223 48943491 -70801407 + AluJo SINE Alu 2 275 -37 297 0 0 0 chr13 48943491 48943524 -70801374 + (TC)n Simple_repeat Simple_repeat 1 33 0 198 118 0 0 chr13 48943523 48943557 -70801341 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 353 230 180 0 chr13 48943557 48943657 -70801241 + MIR SINE MIR 140 257 -5 3861 147 20 45 chr13 48943672 48944255 -70800643 - L1MB3 LINE L1 -9 6174 5613 2045 130 0 0 chr13 48944255 48944548 -70800350 - AluSx SINE Alu -19 293 1 3861 147 20 45 chr13 48944548 48944713 -70800185 - L1MB3 LINE L1 -570 5613 5445 247 250 134 93 chr13 48944737 48944909 -70799989 + Charlie8 DNA MER1_type 1 179 -2238 198 0 0 0 chr13 48945021 48945043 -70799855 + (CAGCT)n Simple_repeat Simple_repeat 3 24 0 198 91 0 0 chr13 48945516 48945549 -70799349 + (A)n Simple_repeat Simple_repeat 1 33 0 339 175 0 32 chr13 48945601 48945664 -70799234 - L2 LINE L2 -16 3256 3196 534 220 0 85 chr13 48945800 48945941 -70798957 - MER5A DNA MER1_type 0 189 61 1011 171 6 0 chr13 48945945 48946120 -70798778 - FRAM SINE Alu 0 176 1 517 117 13 0 chr13 48946120 48946197 -70798701 - MER5A DNA MER1_type -111 78 1 304 161 71 0 chr13 48946975 48947031 -70797867 - MER5B DNA MER1_type 0 178 119 4622 147 48 16 chr13 48947036 48947865 -70797033 + L1MC3 LINE L1 6919 7774 -11 277 239 204 80 chr13 48947933 48948046 -70796852 - MER5B DNA MER1_type -48 130 4 2190 123 0 0 chr13 48948161 48948471 -70796427 - AluSx SINE Alu -2 310 1 1322 167 50 89 chr13 48948495 48948894 -70796004 + MLT1B LTR MaLR 2 467 0 3619 167 28 56 chr13 48949355 48949425 -70795473 - L1MB8 LINE L1 -1 6177 6107 1803 167 10 10 chr13 48949425 48949737 -70795161 + AluJb SINE Alu 1 312 0 3619 167 28 56 chr13 48949737 48949898 -70795000 - L1MB8 LINE L1 -71 6107 5943 2166 110 0 7 chr13 48949898 48950206 -70794692 - AluSx SINE Alu -6 306 1 3619 167 28 56 chr13 48950206 48950771 -70794127 - L1MB8 LINE L1 -235 5943 5403 2213 151 30 63 chr13 48950911 48951029 -70793869 + LOR1b LTR ERV1 45 165 -296 2393 76 0 0 chr13 48951029 48951319 -70793579 + AluY SINE Alu 9 298 -13 2213 151 30 63 chr13 48951319 48951631 -70793267 + LOR1b LTR ERV1 165 461 0 2238 128 42 8 chr13 48951631 48951990 -70792908 + LOR1b-int LTR ERV1 1 371 -7749 374 39 19 0 chr13 48951993 48952045 -70792853 + (TG)n Simple_repeat Simple_repeat 2 54 0 14929 94 74 46 chr13 48952045 48952407 -70792491 + LOR1-int LTR ERV1 208 558 -7562 2056 119 0 45 chr13 48952407 48952573 -70792325 - AluSg SINE Alu -13 297 150 2547 47 0 7 chr13 48952573 48952870 -70792028 - AluY SINE Alu -16 295 1 2056 119 0 45 chr13 48952870 48953014 -70791884 - AluSg SINE Alu -160 150 1 14929 94 74 46 chr13 48953014 48953707 -70791191 + LOR1-int LTR ERV1 558 1230 -6890 1835 120 88 7 chr13 48953707 48953991 -70790907 + AluSg SINE Alu 1 307 -3 14929 94 74 46 chr13 48953991 48955047 -70789851 + LOR1-int LTR ERV1 1230 2407 -5713 1887 143 58 0 chr13 48955047 48955340 -70789558 - AluSg SINE Alu 0 310 1 14929 94 74 46 chr13 48955340 48955767 -70789131 + LOR1-int LTR ERV1 2407 2820 -5300 236 200 0 0 chr13 48955912 48955952 -70788946 - MER5A DNA MER1_type -141 48 9 32179 107 16 66 chr13 48956011 48957608 -70787290 + L1PA8 LINE L1 9 1684 -4488 2226 126 0 0 chr13 48957608 48957909 -70786989 + AluSg SINE Alu 1 301 -9 32179 107 16 66 chr13 48957909 48962800 -70782098 + L1PA8 LINE L1 1684 6164 -8 2088 80 44 87 chr13 48962806 48962989 -70781909 + LOR1-int LTR ERV1 2816 3005 -5115 258 32 0 0 chr13 48962989 48963020 -70781878 + (TTA)n Simple_repeat Simple_repeat 1 31 0 1713 152 7 18 chr13 48963028 48963305 -70781593 - AluSx SINE Alu -38 274 1 2088 80 44 87 chr13 48963305 48963497 -70781401 + LOR1-int LTR ERV1 3012 3183 -4937 2236 86 21 0 chr13 48963497 48963787 -70781111 + AluSx SINE Alu 2 297 -15 9336 92 72 34 chr13 48963787 48963900 -70780998 + LOR1-int LTR ERV1 3941 4048 -4072 2317 94 3 3 chr13 48963900 48964199 -70780699 + AluY SINE Alu 1 299 -12 9336 92 72 34 chr13 48964199 48964874 -70780024 + LOR1-int LTR ERV1 4048 4696 -3424 230 0 33 0 chr13 48964874 48964904 -70779994 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1736 154 4 0 chr13 48964907 48965160 -70779738 - AluSx SINE Alu -31 281 28 9336 92 72 34 chr13 48965160 48965892 -70779006 + LOR1-int LTR ERV1 4697 5524 -2596 1827 103 44 4 chr13 48965872 48966144 -70778754 + LOR1-int LTR ERV1 5782 6064 -2056 * 412 153 42 0 chr13 48966143 48966215 -70778683 + LOR1-int LTR ERV1 8030 8104 -16 * 1860 162 7 0 chr13 48966235 48966525 -70778373 - AluSx SINE Alu -20 292 1 643 102 0 11 chr13 48966558 48966646 -70778252 - HY4 scRNA scRNA -3 90 4 4235 116 54 18 chr13 48966647 48967329 -70777569 + Tigger3b DNA MER2_type 280 986 -245 2816 194 18 29 chr13 48970325 48970878 -70774020 - MER74A LTR ERVL -9 549 3 796 181 289 17 chr13 48971012 48971244 -70773654 - SATR1 Satellite Satellite -18 452 158 1124 277 30 38 chr13 48971244 48971612 -70773286 - MLT1J LTR MaLR -146 365 1 1960 120 3 40 chr13 48971765 48972066 -70772832 - AluSx SINE Alu -22 290 1 1758 152 0 48 chr13 48972190 48972500 -70772398 - AluJb SINE Alu -16 296 2 2082 141 3 0 chr13 48973103 48973407 -70771491 + AluSq SINE Alu 1 305 -8 2025 114 47 0 chr13 48973540 48973837 -70771061 - AluSq SINE Alu 0 313 3 1067 177 6 0 chr13 48974061 48974225 -70770673 - FAM SINE Alu -10 165 1 390 42 0 0 chr13 48974824 48974872 -70770026 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 1225 208 77 0 chr13 48974872 48975132 -70769766 - AluJb SINE Alu -32 280 1 2125 102 20 0 chr13 48975407 48975700 -70769198 + AluSp SINE Alu 1 299 -14 637 187 8 24 chr13 48975762 48975885 -70769013 + AluJo/FLAM SINE Alu 1 121 -191 1936 115 3 30 chr13 48975887 48976057 -70768841 - AluSq SINE Alu -14 299 139 2109 121 24 0 chr13 48976057 48976354 -70768544 - AluSg SINE Alu -6 304 1 1936 115 3 30 chr13 48976354 48976478 -70768420 - AluSq SINE Alu -174 139 13 1362 183 260 24 chr13 48976530 48977129 -70767769 + SATR1 Satellite Satellite 1 457 -1776 2360 86 3 3 chr13 48977129 48977432 -70767466 - AluY SINE Alu -8 303 1 1362 183 260 24 chr13 48977432 48978015 -70766883 + SATR1 Satellite Satellite 457 1836 -397 1747 161 3 14 chr13 48978769 48979060 -70765838 + AluJb SINE Alu 1 288 -24 1037 126 0 38 chr13 48979074 48979233 -70765665 + FAM SINE Alu 4 156 -19 546 269 164 24 chr13 48979275 48979483 -70765415 + MIR SINE MIR 9 245 -17 1487 152 9 84 chr13 48979840 48980023 -70764875 - AluJo SINE Alu -14 298 148 2401 54 0 7 chr13 48980023 48980318 -70764580 - AluY SINE Alu -18 293 1 1487 152 9 84 chr13 48980318 48980456 -70764442 - AluJo SINE Alu -164 148 1 2123 89 44 10 chr13 48980714 48981007 -70763891 - AluSc SINE Alu -6 303 1 2471 81 0 0 chr13 48981308 48981618 -70763280 + AluY SINE Alu 1 310 -1 1687 196 47 28 chr13 48981816 48982138 -70762760 + MER74A LTR ERVL 189 520 -38 1632 205 126 14 chr13 48982138 48982494 -70762404 + MSTD LTR MaLR 1 396 0 1687 196 47 28 chr13 48982494 48982534 -70762364 + MER74A LTR ERVL 520 558 0 327 317 109 35 chr13 48982536 48982738 -70762160 - L3 LINE CR1 -114 1463 1247 2565 58 0 6 chr13 48982987 48983298 -70761600 - AluY SINE Alu -2 309 1 237 223 74 91 chr13 48983299 48983327 -70761571 - L3 LINE CR1 -463 1114 1087 2006 130 0 23 chr13 48983327 48983628 -70761270 + AluSx SINE Alu 2 295 -17 237 223 74 91 chr13 48983628 48983720 -70761178 - L3 LINE CR1 -490 1087 996 2285 97 3 0 chr13 48983817 48984115 -70760783 - AluSp SINE Alu -14 299 1 1403 158 70 40 chr13 48984242 48984514 -70760384 - AluJb SINE Alu -20 292 13 2041 86 0 96 chr13 48984781 48985105 -70759793 - AluY SINE Alu -18 293 1 6936 131 34 51 chr13 48985129 48985411 -70759487 + Tigger3b DNA MER2_type 1 286 -2742 2078 127 3 0 chr13 48985411 48985702 -70759196 - AluSx SINE Alu -20 292 1 6936 131 34 51 chr13 48985702 48985724 -70759174 + Tigger3b DNA MER2_type 286 307 -2721 715 85 0 11 chr13 48985724 48985818 -70759080 - HY4 scRNA scRNA 0 93 1 6936 131 34 51 chr13 48985818 48986230 -70758668 + Tigger3b DNA MER2_type 307 725 -2303 2471 69 0 7 chr13 48986230 48986533 -70758365 - AluSc SINE Alu -8 301 1 6936 131 34 51 chr13 48986533 48987067 -70757831 + Tigger3b DNA MER2_type 725 1231 0 2486 50 3 10 chr13 48988235 48988537 -70756361 - AluY SINE Alu -11 300 1 1965 153 78 21 chr13 48988545 48988559 -70756339 - L1MC3 LINE L1 -1 7784 7772 2116 115 3 3 chr13 48988559 48988855 -70756043 - AluSx SINE Alu -16 296 1 1965 153 78 21 chr13 48988855 48989264 -70755634 - L1MC3 LINE L1 -13 7772 7337 2251 100 7 0 chr13 48989452 48989743 -70755155 + AluSc SINE Alu 1 293 -16 23 33 0 0 chr13 48989743 48989773 -70755125 + AT_rich Low_complexity Low_complexity 1 30 0 485 182 50 10 chr13 48990124 48990223 -70754675 - MER5A DNA MER1_type -85 104 2 2299 119 0 0 chr13 48990227 48990537 -70754361 + AluSg SINE Alu 1 310 0 257 279 103 44 chr13 48990577 48990599 -70754299 - MIR SINE MIR -11 251 232 2173 81 0 14 chr13 48990599 48990912 -70753986 - AluY SINE Alu 0 310 2 257 279 103 44 chr13 48990912 48991024 -70753874 - MIR SINE MIR -30 232 108 21 0 0 0 chr13 48992309 48992330 -70752568 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 48992464 48992485 -70752413 + AT_rich Low_complexity Low_complexity 1 21 0 674 262 35 0 chr13 48992576 48992778 -70752120 - L1MD3 LINE L1 0 7995 7787 1899 213 23 19 chr13 48992781 48993213 -70751685 + L1ME1 LINE L1 5638 6071 -95 254 341 32 0 chr13 48993319 48993442 -70751456 + L1ME3 LINE L1 6027 6153 -9 215 319 33 22 chr13 48993457 48993548 -70751350 - L2 LINE L2 -1379 1935 1844 543 83 52 42 chr13 48993608 48993704 -70751194 + L1PA13 LINE L1 6067 6163 0 187 292 69 0 chr13 48994017 48994089 -70750809 - L2 LINE L2 -1880 1434 1358 2455 68 0 0 chr13 48994171 48994490 -70750408 - AluY SINE Alu 0 319 1 1605 175 6 32 chr13 48995130 48995444 -70749454 - AluJb SINE Alu -1 311 6 1772 119 112 7 chr13 48995488 48995765 -70749133 - AluSg SINE Alu -4 306 1 2143 115 0 10 chr13 48995775 48996098 -70748800 - AluSx SINE Alu 0 312 6 2065 112 3 62 chr13 48996222 48996364 -70748534 + AluSx SINE Alu 1 150 -162 2263 100 0 0 chr13 48996364 48996655 -70748243 + AluSc SINE Alu 15 305 -4 2065 112 3 62 chr13 48996655 48996833 -70748065 + AluSx SINE Alu 150 302 -10 827 165 13 106 chr13 48996908 48997145 -70747753 + L1MC5 LINE L1 7697 7911 -50 229 146 0 125 chr13 48997150 48997198 -70747700 + FRAM SINE Alu 1 32 -135 939 132 0 0 chr13 48997199 48997335 -70747563 + AluJo/FRAM SINE Alu 145 280 -32 332 0 47 0 chr13 48997336 48997379 -70747519 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 2351 113 0 0 chr13 48997765 48998076 -70746822 + AluSx SINE Alu 1 311 -1 2892 97 8 3 chr13 48998136 48998509 -70746389 + THE1C LTR MaLR 1 375 0 80 21 0 0 chr13 48999343 48999437 -70745461 + AT_rich Low_complexity Low_complexity 1 94 0 967 192 98 0 chr13 48999478 48999671 -70745227 - MIR SINE MIR -42 220 9 214 319 0 42 chr13 48999909 48999981 -70744917 - MIR3 SINE MIR -31 177 109 2297 109 0 0 chr13 49000327 49000630 -70744268 - AluSx SINE Alu -9 303 1 716 147 184 7 chr13 49000737 49000873 -70744025 - FRAM SINE Alu -10 166 7 2497 60 0 13 chr13 49001071 49001373 -70743525 - AluSp SINE Alu -15 298 1 1606 166 14 38 chr13 49001374 49001543 -70743355 - AluJb SINE Alu -30 282 121 216 97 0 0 chr13 49001543 49001574 -70743324 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1606 166 14 38 chr13 49001574 49001693 -70743205 - AluJb SINE Alu -191 121 1 472 173 113 125 chr13 49001726 49001781 -70743117 + MIR SINE MIR 97 151 -111 2235 111 0 7 chr13 49001781 49002081 -70742817 + AluSq SINE Alu 4 335 0 307 0 0 0 chr13 49002081 49002115 -70742783 + (TAA)n Simple_repeat Simple_repeat 2 180 0 472 173 113 125 chr13 49002115 49002199 -70742699 + MIR SINE MIR 151 239 -23 2213 100 0 3 chr13 49002199 49002488 -70742410 + AluSg SINE Alu 3 290 -20 472 173 113 125 chr13 49002488 49002512 -70742386 + MIR SINE MIR 239 262 0 2235 97 0 3 chr13 49002616 49002924 -70741974 + AluY SINE Alu 1 307 -4 2268 101 16 3 chr13 49004299 49004607 -70740291 + AluSx SINE Alu 1 312 0 1417 159 0 0 chr13 49005329 49005549 -70739349 + AluJb SINE Alu 84 303 -9 589 265 110 15 chr13 49005585 49005785 -70739113 + MIR SINE MIR 3 221 -41 934 162 0 7 chr13 49006070 49006218 -70738680 - AluJo SINE Alu -161 151 5 988 191 0 12 chr13 49006250 49006418 -70738480 + FRAM SINE Alu 1 166 0 2254 100 7 3 chr13 49006570 49006879 -70738019 - AluSg SINE Alu 0 310 1 2186 120 0 0 chr13 49006881 49007173 -70737725 - AluSx SINE Alu -17 295 4 2244 106 0 3 chr13 49007398 49007691 -70737207 + AluSg SINE Alu 13 304 -6 318 244 8 84 chr13 49007868 49007987 -70736911 - MIR SINE MIR -92 170 61 2213 92 0 7 chr13 49008258 49008566 -70736332 - AluSg SINE Alu 0 306 1 21 0 0 0 chr13 49008665 49008686 -70736212 + AT_rich Low_complexity Low_complexity 1 21 0 1664 170 4 0 chr13 49008754 49009019 -70735879 + AluJb SINE Alu 2 267 -45 332 336 49 28 chr13 49010236 49010379 -70734519 + MLT1K LTR MaLR 121 266 -322 2356 100 0 3 chr13 49010405 49010716 -70734182 + AluSx SINE Alu 1 310 -2 306 172 156 0 chr13 49010887 49010951 -70733947 - MARNA DNA Mariner -40 546 473 320 266 79 22 chr13 49010956 49011095 -70733803 + MARNA DNA Mariner 320 466 -120 255 286 60 0 chr13 49011036 49011120 -70733778 - MARNA DNA Mariner -408 178 90 * 2382 81 16 7 chr13 49011362 49011672 -70733226 + AluSq SINE Alu 1 313 0 322 324 9 9 chr13 49011906 49012014 -70732884 + L2 LINE L2 3206 3313 0 2393 80 13 0 chr13 49014350 49014652 -70730246 + AluSx SINE Alu 1 306 -6 207 0 0 0 chr13 49015124 49015147 -70729751 + (T)n Simple_repeat Simple_repeat 1 23 0 237 327 82 18 chr13 49015272 49015382 -70729516 - MIR SINE MIR -111 151 35 3305 87 24 0 chr13 49015382 49015806 -70729092 - MER57B LTR ERV1 0 434 1 879 271 61 4 chr13 49016851 49017098 -70727800 - MIR SINE MIR 0 262 2 2196 113 3 13 chr13 49017133 49017443 -70727455 + AluSx SINE Alu 1 307 -5 480 92 0 0 chr13 49017733 49017798 -70727100 - AluJb SINE Alu -6 306 242 1090 123 0 7 chr13 49017798 49017952 -70726946 - AluJb SINE Alu -159 153 1 1390 122 0 0 chr13 49017962 49018150 -70726748 - AluSq SINE Alu -15 298 111 557 101 0 0 chr13 49018150 49018219 -70726679 + AluSq/x SINE Alu 35 103 -210 22 56 0 0 chr13 49018335 49018371 -70726527 + AT_rich Low_complexity Low_complexity 1 36 0 1034 218 0 0 chr13 49019611 49019785 -70725113 + FAM SINE Alu 1 174 -1 2301 58 3 17 chr13 49019947 49020241 -70724657 - AluY SINE Alu -21 290 1 2348 102 0 0 chr13 49020552 49020855 -70724043 - AluSc SINE Alu -6 303 1 1980 128 3 20 chr13 49020988 49021285 -70723613 - AluJo SINE Alu -20 292 1 4331 189 46 15 chr13 49021292 49022335 -70722563 - L1MB7 LINE L1 0 6184 5103 795 127 16 0 chr13 49022338 49022464 -70722434 + MLT2B3 LTR ERVL 1 128 -387 1007 120 0 0 chr13 49022464 49022597 -70722301 + AluSq/x SINE Alu 1 133 -180 2063 128 7 7 chr13 49022608 49022904 -70721994 + AluSx SINE Alu 1 296 -16 1767 237 36 48 chr13 49022904 49023343 -70721555 + MLT2B3 LTR ERVL 118 551 -3 1302 200 12 4 chr13 49023345 49023595 -70721303 - L1MB7 LINE L1 -1042 5104 4853 2416 87 0 0 chr13 49023805 49024105 -70720793 + AluY SINE Alu 1 300 -11 3952 90 15 43 chr13 49024259 49024828 -70720070 + MER4B LTR ERV1 1 554 -56 2205 115 0 0 chr13 49024828 49025114 -70719784 - AluSx SINE Alu -26 286 1 3952 90 15 43 chr13 49025114 49025147 -70719751 + MER4B LTR ERV1 554 586 -24 4361 155 27 10 chr13 49025147 49025778 -70719120 + L1PB1 LINE L1 4134 4753 -1398 2179 112 3 3 chr13 49025778 49026073 -70718825 + AluSx SINE Alu 1 295 -17 4361 155 27 10 chr13 49026073 49027180 -70717718 + L1PB1 LINE L1 4753 6083 -68 2031 115 14 3 chr13 49027541 49027827 -70717071 + AluSc SINE Alu 1 289 -20 1284 125 103 22 chr13 49027856 49028080 -70716818 + MLT1D LTR MaLR 3 244 -261 720 102 0 74 chr13 49028113 49028221 -70716677 - MER30 DNA MER1_type 0 230 131 1811 115 4 4 chr13 49028221 49028473 -70716425 - AluSq SINE Alu -12 301 50 2110 143 0 0 chr13 49028474 49028781 -70716117 + AluSx SINE Alu 1 307 -5 3195 75 19 0 chr13 49028781 49029197 -70715701 - MER41A LTR ERV1 -130 424 1 297 224 0 0 chr13 49029206 49029264 -70715634 + MLT1D LTR MaLR 396 453 -52 1042 178 163 15 chr13 49029275 49029607 -70715291 - MER21B LTR ERV1 -369 494 93 249 196 0 0 chr13 49029623 49029679 -70715219 + (TA)n Simple_repeat Simple_repeat 1 56 0 2140 116 3 0 chr13 49029679 49029964 -70714934 - AluSx SINE Alu -26 286 1 551 122 41 0 chr13 49029964 49030062 -70714836 - MER21A LTR ERV1 -829 102 1 7436 140 34 51 chr13 49030136 49030383 -70714515 - MER21A-int LTR ERV1 -51 4140 3890 1589 188 0 33 chr13 49030383 49030686 -70714212 - AluJb SINE Alu -19 293 1 7436 140 34 51 chr13 49030686 49031120 -70713778 - MER21A-int LTR ERV1 -301 3890 3450 2309 84 3 0 chr13 49031120 49031417 -70713481 - AluY SINE Alu -13 298 1 7436 140 34 51 chr13 49031417 49032057 -70712841 - MER21A-int LTR ERV1 -741 3450 2841 5971 166 77 28 chr13 49032037 49033083 -70711815 - MER21A-int LTR ERV1 -1776 2415 1309 * 861 165 0 8 chr13 49033083 49033216 -70711682 - FLAM_C SINE Alu -1 132 1 5971 166 77 28 chr13 49033216 49033299 -70711599 - MER21A-int LTR ERV1 -2882 1309 1231 360 133 0 0 chr13 49033312 49033372 -70711526 + (TCC)n Simple_repeat Simple_repeat 3 62 0 389 137 0 11 chr13 49033376 49033471 -70711427 + (CTG)n Simple_repeat Simple_repeat 2 95 0 * 520 173 6 40 chr13 49033463 49033636 -70711262 + CT-rich Low_complexity Low_complexity 3 169 0 498 161 23 11 chr13 49033643 49033730 -70711168 + polypyrimidine Low_complexity Low_complexity 1 88 0 994 151 7 0 chr13 49033730 49033882 -70711016 - FRAM SINE Alu -3 173 21 449 267 50 40 chr13 49035226 49035451 -70709447 + L1MC5 LINE L1 7236 7493 -534 1786 216 45 31 chr13 49035468 49035916 -70708982 - LTR40c LTR ERVL -4 461 8 2510 206 37 19 chr13 49036044 49036635 -70708263 - L1M4 LINE L1 -1099 5047 4446 * 8435 200 40 68 chr13 49036621 49037050 -70707848 + L1MCa LINE L1 2080 2519 -3907 2298 120 0 0 chr13 49037050 49037358 -70707540 + AluSg SINE Alu 3 310 0 8435 200 40 68 chr13 49037358 49037574 -70707324 + L1MCa LINE L1 2519 2739 -3687 2033 122 10 32 chr13 49037574 49037885 -70707013 - AluSx SINE Alu -8 304 1 8435 200 40 68 chr13 49037885 49038330 -70706568 + L1MCa LINE L1 2739 3195 -3231 2124 65 0 8 chr13 49038330 49038591 -70706307 - AluY SINE Alu -13 298 40 8435 200 40 68 chr13 49038591 49039501 -70705397 + L1MCa LINE L1 3195 3966 -2460 1879 164 6 13 chr13 49039501 49039813 -70705085 + AluJo SINE Alu 1 310 -2 8435 200 40 68 chr13 49039813 49040845 -70704053 + L1MCa LINE L1 3966 5025 -1401 472 206 0 0 chr13 49040853 49040926 -70703972 + FLAM_A SINE Alu 6 78 -64 6322 163 24 25 chr13 49040930 49041049 -70703849 + L1MC1 LINE L1 4628 4746 -1587 797 194 0 43 chr13 49041049 49041188 -70703710 + FLAM_A SINE Alu 1 133 0 6322 163 24 25 chr13 49041188 49041521 -70703377 + L1MC1 LINE L1 4746 5078 -1255 2710 166 26 5 chr13 49041521 49041938 -70702960 + MSTB LTR MaLR 1 426 0 6322 163 24 25 chr13 49041938 49041955 -70702943 + L1MC1 LINE L1 5078 5094 -1239 2511 54 0 10 chr13 49041955 49042253 -70702645 - AluY SINE Alu -16 295 1 6322 163 24 25 chr13 49042253 49043487 -70701411 + L1MC1 LINE L1 5094 6327 -6 3570 206 113 75 chr13 49043494 49043505 -70701393 + L1ME2 LINE L1 3793 3802 -2344 2448 94 3 0 chr13 49043505 49043813 -70701085 + AluSg SINE Alu 1 309 -1 3570 206 113 75 chr13 49043813 49044562 -70700336 + L1ME2 LINE L1 3802 4521 -1625 827 142 0 25 chr13 49044562 49044682 -70700216 + FLAM_C SINE Alu 2 118 -15 495 0 0 0 chr13 49044688 49044743 -70700155 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 3570 206 113 75 chr13 49044743 49044801 -70700097 + L1ME2 LINE L1 4525 4579 -1567 2063 135 6 6 chr13 49044801 49045113 -70699785 - AluSx SINE Alu 0 312 1 3570 206 113 75 chr13 49045113 49045521 -70699377 + L1ME2 LINE L1 4579 5084 -1062 2236 98 3 3 chr13 49045521 49045818 -70699080 - AluSx SINE Alu -15 297 1 3570 206 113 75 chr13 49045818 49045899 -70698999 + L1ME2 LINE L1 5084 5160 -986 1606 200 31 14 chr13 49046118 49046473 -70698425 - L1M4 LINE L1 -1089 5057 4697 21 0 0 0 chr13 49046480 49046501 -70698397 + AT_rich Low_complexity Low_complexity 1 21 0 2094 137 0 0 chr13 49046502 49046801 -70698097 + AluSx SINE Alu 1 299 -13 2591 184 91 13 chr13 49046802 49047465 -70697433 + L1ME2 LINE L1 5162 5873 -293 2504 69 0 0 chr13 49047682 49047987 -70696911 + AluY SINE Alu 1 305 -6 1080 125 0 7 chr13 49047988 49048140 -70696758 + AluSg/x SINE Alu 134 284 -28 180 0 0 0 chr13 49048145 49048165 -70696733 + (CAA)n Simple_repeat Simple_repeat 2 21 0 24 32 0 0 chr13 49048194 49048225 -70696673 + AT_rich Low_complexity Low_complexity 1 31 0 1753 172 31 0 chr13 49048578 49048869 -70696029 - AluJb SINE Alu -12 300 1 2346 82 7 0 chr13 49049065 49049356 -70695542 + AluSp SINE Alu 1 293 -20 1481 122 176 16 chr13 49049362 49049617 -70695281 + AluSg SINE Alu 1 296 -4 351 238 14 95 chr13 49049617 49049764 -70695134 + L1ME2 LINE L1 6020 6154 -10 254 260 13 13 chr13 49049799 49049876 -70695022 + L1MC4 LINE L1 7826 7902 -140 1880 111 41 4 chr13 49050140 49050410 -70694488 - AluSg SINE Alu -30 280 1 309 186 43 0 chr13 49050531 49050601 -70694297 - L2 LINE L2 -1 3271 3199 2132 110 14 3 chr13 49051244 49051536 -70693362 + AluSx SINE Alu 3 297 -15 1996 112 53 0 chr13 49051818 49052103 -70692795 - AluSp SINE Alu -13 300 1 1271 137 0 2 chr13 49053133 49053381 -70691517 - AluJb SINE Alu -9 303 2 210 222 0 0 chr13 49053573 49053627 -70691271 + (TATG)n Simple_repeat Simple_repeat 2 55 0 342 309 113 24 chr13 49054612 49054780 -70690118 + L2 LINE L2 3090 3272 0 291 218 0 0 chr13 49055200 49055255 -70689643 - MIR3 SINE MIR -43 165 111 1980 146 10 0 chr13 49055417 49055712 -70689186 + AluJo SINE Alu 1 298 -14 364 293 193 0 chr13 49056692 49056842 -70688056 - MER5A DNA MER1_type -7 182 4 2039 104 0 75 chr13 49057539 49057857 -70687041 + AluSp SINE Alu 1 294 -19 2312 91 0 7 chr13 49057867 49058165 -70686733 + AluSc SINE Alu 1 296 -13 291 299 79 30 chr13 49058516 49058680 -70686218 - MIR SINE MIR -1 261 90 * 976 280 95 40 chr13 49058660 49058912 -70685986 + L2 LINE L2 2429 2666 -648 1533 195 3 52 chr13 49058912 49059143 -70685755 - AluJo SINE Alu 0 312 71 216 0 0 0 chr13 49059143 49059167 -70685731 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2163 102 3 0 chr13 49059168 49059451 -70685447 - AluSq SINE Alu -29 284 1 1533 195 3 52 chr13 49059451 49059545 -70685353 - AluJo SINE Alu -240 72 1 976 280 95 40 chr13 49059545 49059671 -70685227 + L2 LINE L2 2666 2828 -486 1458 261 127 18 chr13 49059687 49060372 -70684526 - L2 LINE L2 0 3313 2540 27 0 0 0 chr13 49060796 49060823 -70684075 + AT_rich Low_complexity Low_complexity 1 27 0 2077 101 54 10 chr13 49060966 49061262 -70683636 + AluSc SINE Alu 1 309 0 2523 58 0 0 chr13 49061269 49061563 -70683335 + AluY SINE Alu 1 294 -17 311 254 108 27 chr13 49061986 49062156 -70682742 + MIR SINE MIR 23 203 -59 274 204 83 91 chr13 49062265 49062397 -70682501 + MER94 DNA DNA 3 133 -1 1937 126 0 52 chr13 49062569 49062878 -70682020 + AluJo SINE Alu 2 294 -18 2209 114 19 3 chr13 49062911 49063218 -70681680 + AluSq SINE Alu 1 312 -1 267 213 13 80 chr13 49064091 49064166 -70680732 + MIR SINE MIR 81 150 -112 2341 96 0 3 chr13 49064212 49064515 -70680383 - AluSg SINE Alu -8 302 1 1442 128 14 9 chr13 49064611 49064830 -70680068 - AluSg/x SINE Alu -9 303 84 2322 101 0 3 chr13 49065325 49065623 -70679275 + AluSg SINE Alu 1 297 -13 2214 132 0 0 chr13 49065632 49065943 -70678955 + AluSx SINE Alu 1 311 -1 1127 126 0 0 chr13 49066212 49066387 -70678511 + AluSc SINE Alu 131 305 0 215 278 153 53 chr13 49066708 49066744 -70678154 - L2 LINE L2 -47 3266 3235 228 35 0 0 chr13 49066744 49066773 -70678125 + (CA)n Simple_repeat Simple_repeat 2 30 0 215 278 153 53 chr13 49066773 49067114 -70677784 - L2 LINE L2 -78 3235 2851 515 283 89 31 chr13 49067241 49067499 -70677399 - L2 LINE L2 -1159 2155 1883 2428 83 3 6 chr13 49068149 49068461 -70676437 - AluSp SINE Alu -2 311 1 2004 129 24 3 chr13 49068709 49069004 -70675894 + AluSx SINE Alu 1 301 -11 25 31 0 0 chr13 49069092 49069124 -70675774 + AT_rich Low_complexity Low_complexity 1 32 0 1202 195 112 4 chr13 49069264 49069547 -70675351 + AluJb SINE Alu 6 315 0 184 307 144 40 chr13 49069704 49069906 -70674992 + L2 LINE L2 2895 3117 -155 2335 95 0 0 chr13 49069950 49070245 -70674653 - AluSq SINE Alu -18 295 1 628 274 160 19 chr13 49070949 49071161 -70673737 - MIR SINE MIR -1 261 20 45 87 0 0 chr13 49071520 49071635 -70673263 + AT_rich Low_complexity Low_complexity 1 115 0 28 0 0 0 chr13 49072172 49072200 -70672698 + AT_rich Low_complexity Low_complexity 1 28 0 1484 149 193 80 chr13 49072221 49072584 -70672314 - MER4A LTR ERV1 0 664 261 603 92 41 41 chr13 49072584 49072682 -70672216 - MER4A LTR ERV1 -566 98 1 1813 136 11 0 chr13 49072750 49073014 -70671884 + AluJo SINE Alu 1 267 -45 676 228 35 108 chr13 49073734 49073829 -70671069 + LTR9 LTR ERV1 3 103 -509 1921 96 11 8 chr13 49073829 49074090 -70670808 + AluSx SINE Alu 36 297 -15 676 228 35 108 chr13 49074090 49074253 -70670645 + LTR9 LTR ERV1 103 242 -370 845 226 99 53 chr13 49074270 49074665 -70670233 + LTR9 LTR ERV1 213 612 0 693 174 23 38 chr13 49074691 49074823 -70670075 - FLAM_A SINE Alu -2 131 2 273 304 0 0 chr13 49074949 49075018 -70669880 - MIR3 SINE MIR -28 180 112 195 291 127 76 chr13 49075039 49075197 -70669701 + MIR3 SINE MIR 30 195 -13 604 264 36 27 chr13 49075385 49075605 -70669293 + L1ME LINE L1 5508 5729 -392 1527 108 0 5 chr13 49075790 49075994 -70668904 + AluSq SINE Alu 99 301 -12 2015 139 10 0 chr13 49076792 49077094 -70667804 + AluSx SINE Alu 1 305 -7 2203 124 0 0 chr13 49077347 49077645 -70667253 - AluSg SINE Alu -12 298 1 416 125 0 0 chr13 49077673 49077729 -70667169 + FLAM_A SINE Alu 5 60 -72 1491 177 23 30 chr13 49078863 49079163 -70665735 + AluJb SINE Alu 1 298 -14 1889 141 0 55 chr13 49079165 49079477 -70665421 + AluSx SINE Alu 1 295 -17 2457 74 0 0 chr13 49079478 49079775 -70665123 + AluSq SINE Alu 1 297 -16 1850 80 106 14 chr13 49080050 49080325 -70664573 - AluSp SINE Alu -13 300 1 2191 101 0 16 chr13 49081208 49081515 -70663383 + AluSx SINE Alu 1 302 -10 2238 95 7 7 chr13 49081518 49081814 -70663084 + AluSg SINE Alu 1 296 -14 2183 91 21 3 chr13 49081815 49082100 -70662798 + AluSq SINE Alu 2 291 -22 2329 78 0 7 chr13 49082373 49082668 -70662230 - AluY SINE Alu -18 293 1 1509 171 100 7 chr13 49082846 49083126 -70661772 + AluJo SINE Alu 1 306 -6 5704 159 109 40 chr13 49083158 49083216 -70661682 - Charlie1a DNA MER1_type -1310 1451 1398 1596 163 27 44 chr13 49083216 49083511 -70661387 + AluJb SINE Alu 21 310 -2 5704 159 109 40 chr13 49083511 49083788 -70661110 - Charlie1a DNA MER1_type -1363 1398 1141 1424 155 33 100 chr13 49083788 49083917 -70660981 + AluJo SINE Alu 1 137 -175 2449 89 0 0 chr13 49083917 49084221 -70660677 + AluSx SINE Alu 1 304 -8 1424 155 33 100 chr13 49084221 49084420 -70660478 + AluJo SINE Alu 137 307 -5 5704 159 109 40 chr13 49084420 49084503 -70660395 - Charlie1a DNA MER1_type -1620 1141 1065 1836 160 0 16 chr13 49084503 49084816 -70660082 - AluJb SINE Alu -4 308 1 5704 159 109 40 chr13 49084816 49085753 -70659145 - Charlie1a DNA MER1_type -1696 1065 1 2239 94 0 50 chr13 49087981 49088300 -70656598 - AluY SINE Alu -8 303 1 693 199 0 57 chr13 49088650 49088791 -70656107 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr13 49088791 49088815 -70656083 + AT_rich Low_complexity Low_complexity 1 24 0 225 234 0 0 chr13 49088815 49088879 -70656019 - L1MC4 LINE L1 -1339 6703 6640 23 0 0 0 chr13 49089534 49089557 -70655341 + AT_rich Low_complexity Low_complexity 1 23 0 513 0 0 0 chr13 49089557 49089614 -70655284 + (TA)n Simple_repeat Simple_repeat 1 57 0 478 189 90 8 chr13 49090672 49090794 -70654104 + MER94 DNA DNA 1 132 -2 22 35 0 0 chr13 49091313 49091342 -70653556 + AT_rich Low_complexity Low_complexity 1 29 0 2250 102 0 0 chr13 49093255 49093540 -70651358 - AluSp SINE Alu -28 285 1 806 67 0 0 chr13 49093595 49093699 -70651199 - AluY SINE Alu 0 311 208 2165 133 0 0 chr13 49094218 49094519 -70650379 + AluSx SINE Alu 1 301 -11 345 130 37 0 chr13 49095173 49095227 -70649671 + AluS SINE Alu 226 281 -21 586 209 0 0 chr13 49095227 49095356 -70649542 + L1MA4 LINE L1 6164 6292 -8 192 40 0 0 chr13 49095398 49095423 -70649475 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2125 93 0 7 chr13 49095423 49095702 -70649196 - AluSc SINE Alu -32 277 1 25 0 0 0 chr13 49095747 49095772 -70649126 + AT_rich Low_complexity Low_complexity 1 25 0 1613 131 10 86 chr13 49095786 49096076 -70648822 - AluJo SINE Alu -44 268 1 2151 128 0 3 chr13 49096265 49096562 -70648336 - AluSx SINE Alu -16 296 1 629 147 73 59 chr13 49097115 49097251 -70647647 + FLAM_C SINE Alu 6 143 0 2035 123 20 13 chr13 49097316 49097618 -70647280 + AluSx SINE Alu 1 304 -8 1758 180 7 3 chr13 49098121 49098415 -70646483 - AluJo SINE Alu -17 295 1 2104 125 10 0 chr13 49098735 49099030 -70645868 + AluSq SINE Alu 1 298 -15 419 321 109 40 chr13 49100581 49100735 -70644163 + L2 LINE L2 2228 2370 -944 2171 117 13 0 chr13 49100735 49101033 -70643865 - AluSx SINE Alu -10 302 1 419 321 109 40 chr13 49101033 49101273 -70643625 + L2 LINE L2 2370 2649 -665 198 374 0 24 chr13 49102895 49102978 -70641920 - L2 LINE L2 -7 3265 3185 2434 179 50 44 chr13 49104589 49105109 -70639789 - MER44D DNA MER2_type -1 604 27 22 0 0 0 chr13 49105294 49105316 -70639582 + AT_rich Low_complexity Low_complexity 1 22 0 2089 104 6 22 chr13 49105319 49105455 -70639443 + AluSx SINE Alu 1 138 -174 2324 78 0 53 chr13 49105455 49105775 -70639123 + AluY SINE Alu 1 303 -8 2089 104 6 22 chr13 49105775 49105955 -70638943 + AluSx SINE Alu 138 312 0 2188 107 10 0 chr13 49107442 49107742 -70637156 + AluSg SINE Alu 1 303 -7 2178 107 3 0 chr13 49108917 49109215 -70635683 - AluSq SINE Alu -14 299 1 298 278 0 0 chr13 49109560 49109650 -70635248 + L1MC4 LINE L1 6614 6703 -1339 201 182 0 0 chr13 49109650 49109683 -70635215 + (TA)n Simple_repeat Simple_repeat 2 34 0 2063 137 0 0 chr13 49109683 49109975 -70634923 - AluSx SINE Alu -20 292 1 580 301 118 18 chr13 49110616 49110845 -70634053 + MIR SINE MIR 11 262 0 180 0 0 0 chr13 49111369 49111389 -70633509 + (CA)n Simple_repeat Simple_repeat 2 21 0 2018 85 14 11 chr13 49111793 49112075 -70632823 - AluSg SINE Alu -27 283 1 270 302 274 16 chr13 49112198 49112453 -70632445 - L3 LINE CR1 -155 1422 1102 1485 173 40 10 chr13 49112811 49113111 -70631787 + AluJo SINE Alu 1 309 -3 1904 87 112 0 chr13 49113450 49113726 -70631172 - AluSx SINE Alu -5 307 1 2028 129 0 10 chr13 49114089 49114392 -70630506 - AluSx SINE Alu -10 302 3 23 33 0 0 chr13 49114853 49114883 -70630015 + AT_rich Low_complexity Low_complexity 1 30 0 2001 121 17 0 chr13 49116416 49116706 -70628192 + AluSg SINE Alu 3 297 -13 1936 110 7 17 chr13 49117123 49117414 -70627484 + AluSg SINE Alu 1 288 -22 1196 263 33 82 chr13 49117461 49117947 -70626951 + L2 LINE L2 2804 3265 -48 24 0 0 0 chr13 49119276 49119300 -70625598 + AT_rich Low_complexity Low_complexity 1 24 0 2007 120 7 0 chr13 49120627 49120926 -70623972 - AluSx SINE Alu -11 301 1 237 267 0 0 chr13 49120936 49120981 -70623917 + C-rich Low_complexity Low_complexity 5 49 0 1985 101 0 0 chr13 49120984 49121241 -70623657 - AluSg SINE Alu -53 257 1 1491 116 148 12 chr13 49121535 49121785 -70623113 - AluSx SINE Alu -28 284 1 688 157 26 0 chr13 49121810 49121925 -70622973 + FLAM_C SINE Alu 1 118 -25 25 51 0 0 chr13 49121925 49121964 -70622934 + AT_rich Low_complexity Low_complexity 1 39 0 2143 108 0 3 chr13 49121964 49122259 -70622639 - AluSq SINE Alu -19 294 1 2211 71 44 3 chr13 49122263 49122558 -70622340 - AluY SINE Alu -4 307 1 45 34 0 0 chr13 49122564 49122623 -70622275 + AT_rich Low_complexity Low_complexity 1 59 0 21 95 0 0 chr13 49124198 49124261 -70620637 + AT_rich Low_complexity Low_complexity 1 63 0 21 57 0 0 chr13 49124318 49124353 -70620545 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr13 49124944 49124975 -70619923 + AT_rich Low_complexity Low_complexity 1 31 0 1475 179 14 21 chr13 49125132 49125412 -70619486 - AluJo SINE Alu -34 278 1 925 92 8 15 chr13 49125419 49125549 -70619349 - AluSq/x SINE Alu -180 133 5 333 226 65 65 chr13 49125739 49125832 -70619066 - L2 LINE L2 -6 3307 3215 9845 126 81 13 chr13 49125836 49126031 -70618867 + Tigger2 DNA MER2_type 944 1124 -1594 2457 70 0 0 chr13 49126031 49126332 -70618566 - AluY SINE Alu -10 301 1 9845 126 81 13 chr13 49126332 49127797 -70617101 + Tigger2 DNA MER2_type 1124 2718 0 4507 183 75 20 chr13 49127799 49128761 -70616137 - L1MB3 LINE L1 0 6183 5275 1908 115 54 0 chr13 49128761 49129039 -70615859 - AluSg SINE Alu -17 293 1 4507 183 75 20 chr13 49129039 49129981 -70614917 - L1MB3 LINE L1 -908 5275 4190 647 257 231 21 chr13 49130033 49130371 -70614527 + L2 LINE L2 1284 1692 -1622 22 0 0 0 chr13 49130531 49130553 -70614345 + AT_rich Low_complexity Low_complexity 1 22 0 1850 155 0 20 chr13 49131220 49131523 -70613375 - AluJb SINE Alu -14 298 2 1473 129 40 114 chr13 49132417 49132559 -70612339 + AluJo SINE Alu 1 107 -205 1546 77 0 61 chr13 49132559 49132632 -70612266 - L1PA13 LINE L1 -5 6158 6082 2153 118 0 6 chr13 49132632 49132945 -70611953 - AluSx SINE Alu -1 311 1 1546 77 0 61 chr13 49132945 49133118 -70611780 - L1PA13 LINE L1 -81 6082 5927 1473 129 40 114 chr13 49133118 49133300 -70611598 + AluJo SINE Alu 107 301 -11 545 272 97 106 chr13 49134455 49134775 -70610123 + L3 LINE CR1 907 1223 -354 4552 158 60 10 chr13 49134826 49135649 -70609249 + MER6 DNA MER2_type 2 865 0 23 54 0 0 chr13 49135770 49135807 -70609091 + AT_rich Low_complexity Low_complexity 1 37 0 2144 128 0 0 chr13 49136009 49136306 -70608592 - AluSx SINE Alu -15 297 1 1999 119 11 3 chr13 49136322 49136608 -70608290 - AluSq SINE Alu -25 288 1 1327 117 0 0 chr13 49136777 49136956 -70607942 - AluSg/x SINE Alu -6 304 126 450 0 0 0 chr13 49136956 49137006 -70607892 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2042 121 0 0 chr13 49137006 49137288 -70607610 - AluSg SINE Alu -28 282 1 2183 96 0 32 chr13 49139235 49139549 -70605349 + AluSp SINE Alu 1 304 -9 659 104 58 0 chr13 49139582 49139929 -70604969 + (TA)n Simple_repeat Simple_repeat 1 367 0 1394 83 0 0 chr13 49139944 49140125 -70604773 - AluY SINE Alu 0 311 131 187 286 18 0 chr13 49141555 49141611 -70603287 + MER5A DNA MER1_type 50 106 -83 504 228 0 0 chr13 49141648 49141740 -70603158 + L2 LINE L2 3221 3312 -1 2487 30 3 3 chr13 49141812 49142109 -70602789 - AluY SINE Alu -14 297 1 966 161 0 25 chr13 49142795 49142956 -70601942 - FRAM SINE Alu -20 156 1 257 281 76 41 chr13 49143883 49144123 -70600775 - L1ME LINE L1 -364 5798 5533 22 0 0 0 chr13 49144599 49144621 -70600277 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr13 49145107 49145134 -70599764 + (A)n Simple_repeat Simple_repeat 1 27 0 192 77 0 0 chr13 49146139 49146165 -70598733 + (CTG)n Simple_repeat Simple_repeat 2 27 0 28 29 0 0 chr13 49146266 49146301 -70598597 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 49147147 49147176 -70597722 + AT_rich Low_complexity Low_complexity 1 29 0 26 74 0 0 chr13 49147661 49147715 -70597183 + AT_rich Low_complexity Low_complexity 1 54 0 1281 109 0 0 chr13 49150590 49150764 -70594134 - AluSq SINE Alu -6 307 134 32 75 0 0 chr13 49151658 49151725 -70593173 + AT_rich Low_complexity Low_complexity 1 67 0 23 86 0 0 chr13 49152320 49152378 -70592520 + AT_rich Low_complexity Low_complexity 1 58 0 214 246 0 0 chr13 49152524 49152585 -70592313 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 626 254 57 24 chr13 49156963 49157172 -70587726 - MIR SINE MIR -43 219 4 657 234 86 54 chr13 49157480 49157702 -70587196 - MIR SINE MIR -2 260 32 2480 45 0 0 chr13 49157748 49158035 -70586863 - AluSc SINE Alu -15 294 8 682 230 177 10 chr13 49158268 49158477 -70586421 + MIR SINE MIR 18 261 -1 2093 85 60 0 chr13 49158560 49158842 -70586056 - AluSg SINE Alu -10 300 2 391 261 52 0 chr13 49159313 49159428 -70585470 - MIR SINE MIR -10 252 132 2544 52 0 3 chr13 49160184 49160490 -70584408 + AluY SINE Alu 1 305 -6 721 195 16 0 chr13 49160927 49161055 -70583843 - FLAM_A SINE Alu -3 130 1 1656 181 96 86 chr13 49161206 49161704 -70583194 + MLT1D LTR MaLR 1 503 -2 198 0 0 0 chr13 49161761 49161783 -70583115 + (TG)n Simple_repeat Simple_repeat 2 23 0 1244 162 18 9 chr13 49161810 49162039 -70582859 - AluJb SINE Alu 0 312 82 1828 128 64 0 chr13 49162832 49163113 -70581785 - AluSx SINE Alu -13 299 1 403 329 57 73 chr13 49163338 49163654 -70581244 - L3 LINE CR1 -213 1364 1054 1825 141 0 53 chr13 49164842 49165146 -70579752 - AluSx SINE Alu -24 288 1 675 308 113 68 chr13 49166110 49166235 -70578663 - L2 LINE L2 -809 2505 2387 225 0 0 0 chr13 49166235 49166260 -70578638 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 423 68 0 0 chr13 49166259 49166318 -70578580 + (TG)n Simple_repeat Simple_repeat 1 59 0 675 308 113 68 chr13 49166260 49166854 -70578044 - L2 LINE L2 -927 2387 1814 2145 137 3 0 chr13 49166854 49167160 -70577738 + AluSp SINE Alu 1 307 -6 30 0 0 0 chr13 49167200 49167230 -70577668 + AT_rich Low_complexity Low_complexity 1 30 0 1517 215 75 32 chr13 49167450 49167892 -70577006 + L1MA10 LINE L1 5871 6331 -3 540 272 110 0 chr13 49167950 49168178 -70576720 + L1MD3 LINE L1 7743 7995 0 476 158 11 0 chr13 49168179 49168274 -70576624 + L1MB4 LINE L1 6067 6162 -18 544 209 0 0 chr13 49168305 49168410 -70576488 + L1PA16 LINE L1 6053 6157 -9 26 0 0 0 chr13 49168410 49168436 -70576462 + AT_rich Low_complexity Low_complexity 1 26 0 1454 211 65 8 chr13 49168440 49168796 -70576102 + MER101 LTR ERV1 72 447 -27 257 308 33 42 chr13 49168983 49169103 -70575795 - MER5B DNA MER1_type -59 119 1 433 302 21 30 chr13 49170073 49170314 -70574584 + L2 LINE L2 2756 2992 -321 572 290 159 12 chr13 49170629 49170881 -70574017 + L2 LINE L2 3024 3312 -1 34 24 0 0 chr13 49170919 49170960 -70573938 + AT_rich Low_complexity Low_complexity 1 41 0 234 0 0 0 chr13 49171079 49171105 -70573793 + (TA)n Simple_repeat Simple_repeat 2 27 0 1542 121 12 0 chr13 49171517 49171766 -70573132 - L1MA5A LINE L1 -6 6291 6040 198 343 48 19 chr13 49171875 49171980 -70572918 + MIR SINE MIR 30 137 -71 22 0 0 0 chr13 49172490 49172512 -70572386 + AT_rich Low_complexity Low_complexity 1 22 0 457 195 47 8 chr13 49172673 49172801 -70572097 + L1MB7 LINE L1 6052 6184 0 1308 201 42 50 chr13 49173549 49173832 -70571066 + AluJo SINE Alu 4 284 -18 327 49 0 0 chr13 49173832 49173873 -70571025 + (CA)n Simple_repeat Simple_repeat 2 42 0 1860 168 3 0 chr13 49175009 49175301 -70569597 - AluJb SINE Alu -19 293 1 562 284 119 49 chr13 49175852 49176324 -70568574 + MLT1K LTR MaLR 77 581 -7 2077 152 3 3 chr13 49176340 49176643 -70568255 - AluSx SINE Alu -9 303 1 381 287 0 19 chr13 49176975 49177083 -70567815 + MLT2E LTR ERVL 30 135 -493 297 0 0 0 chr13 49177323 49177356 -70567542 + (CAGC)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr13 49177687 49177716 -70567182 + AT_rich Low_complexity Low_complexity 1 29 0 730 142 0 0 chr13 49182949 49183055 -70561843 + FRAM SINE Alu 41 146 -30 207 0 0 0 chr13 49183059 49183082 -70561816 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 310 256 70 35 chr13 49183330 49183416 -70561482 + MIR SINE MIR 40 128 -134 428 334 13 5 chr13 49184066 49184251 -70560647 + MIR3 SINE MIR 15 200 -8 368 278 35 77 chr13 49184451 49184620 -70560278 + MLT1J LTR MaLR 258 419 -92 581 293 47 16 chr13 49186270 49186461 -70558437 - MIR SINE MIR -38 224 28 2986 167 14 61 chr13 49186479 49187121 -70557777 + LTR9 LTR ERV1 1 612 0 298 273 203 16 chr13 49188315 49188443 -70556455 + MIR SINE MIR 110 261 -1 1742 173 9 35 chr13 49188750 49189096 -70555802 - MER1B DNA MER1_type 0 337 1 211 237 105 26 chr13 49189234 49189310 -70555588 + MIR SINE MIR 181 262 0 231 339 150 0 chr13 49189311 49189438 -70555460 + L3b LINE CR1 1168 1313 -270 502 152 50 0 chr13 49190146 49190245 -70554653 - MER5A DNA MER1_type -77 112 9 192 163 116 0 chr13 49192188 49192231 -70552667 + MIR3 SINE MIR 119 166 -42 * 692 211 60 18 chr13 49192225 49192391 -70552507 - MER5B DNA MER1_type -5 173 1 214 271 17 0 chr13 49192391 49192446 -70552452 + MIR3 SINE MIR 153 208 0 262 229 0 0 chr13 49192967 49193028 -70551870 + T-rich Low_complexity Low_complexity 1 61 0 7295 30 1 1 chr13 49193029 49193931 -70550967 - L1PA3 LINE L1 0 6155 5254 475 29 43 0 chr13 49193942 49194012 -70550886 + L1P LINE L1 3745 3817 -2329 312 206 137 0 chr13 49194494 49194567 -70550331 + MIR SINE MIR 71 153 -109 6204 124 40 22 chr13 49194568 49194761 -70550137 + Tigger1 DNA MER2_type 1 189 -2229 2199 103 7 0 chr13 49194761 49195053 -70549845 - AluSx SINE Alu -18 294 1 6204 124 40 22 chr13 49195053 49195078 -70549820 + Tigger1 DNA MER2_type 189 212 -2206 2232 143 6 3 chr13 49195078 49195420 -70549478 + MER61A LTR ERV1 1 343 0 6204 124 40 22 chr13 49195420 49196280 -70548618 + Tigger1 DNA MER2_type 212 1099 -1319 2046 144 6 54 chr13 49196496 49196850 -70548048 + MER1B DNA MER1_type 1 337 0 1686 187 25 30 chr13 49197416 49197812 -70547086 + MSTD LTR MaLR 3 396 0 353 330 0 0 chr13 49197934 49198034 -70546864 + MIR SINE MIR 157 256 -6 396 289 56 41 chr13 49198167 49198364 -70546534 - MIR3 SINE MIR -1 207 8 309 283 71 0 chr13 49198785 49198884 -70546014 + MIR SINE MIR 65 170 -92 180 111 0 0 chr13 49198934 49198961 -70545937 + (TTG)n Simple_repeat Simple_repeat 3 29 0 372 261 292 5 chr13 49199198 49199393 -70545505 - MIR SINE MIR 0 262 12 327 49 0 0 chr13 49199837 49199878 -70545020 + (TA)n Simple_repeat Simple_repeat 2 42 0 326 298 101 38 chr13 49200103 49200261 -70544637 + MIR3 SINE MIR 30 197 -11 216 255 0 0 chr13 49200489 49200540 -70544358 + CT-rich Low_complexity Low_complexity 3 53 0 28 0 0 0 chr13 49200574 49200602 -70544296 + AT_rich Low_complexity Low_complexity 1 28 0 1597 199 34 0 chr13 49202044 49202340 -70542558 - AluJo SINE Alu -1 311 6 223 294 98 29 chr13 49202536 49202638 -70542260 - MIR SINE MIR -44 218 110 273 119 0 0 chr13 49202775 49202817 -70542081 + (A)n Simple_repeat Simple_repeat 1 42 0 2163 119 7 10 chr13 49203171 49203474 -70541424 + AluSq SINE Alu 1 302 -11 2188 128 0 0 chr13 49204237 49204533 -70540365 + AluSx SINE Alu 1 296 -16 438 294 25 103 chr13 49205088 49205448 -70539450 + L2 LINE L2 2941 3272 0 1539 164 4 4 chr13 49205710 49205960 -70538938 + AluSx SINE Alu 1 250 -62 25 0 0 0 chr13 49206081 49206106 -70538792 + AT_rich Low_complexity Low_complexity 1 25 0 326 279 125 0 chr13 49206124 49206228 -70538670 + L2 LINE L2 3156 3272 0 282 327 215 22 chr13 49206439 49207039 -70537859 - L3 LINE CR1 -102 1475 760 820 176 0 0 chr13 49207894 49208019 -70536879 - FLAM_C SINE Alu -8 125 1 298 278 104 26 chr13 49208408 49208523 -70536375 - L3 LINE CR1 -68 1509 1386 297 0 0 0 chr13 49209691 49209723 -70535175 + L1PA10 LINE L1 6025 6056 -112 2388 104 3 0 chr13 49209924 49210233 -70534665 + AluSp SINE Alu 1 310 -3 234 220 68 0 chr13 49211532 49211591 -70533307 - L1ME LINE L1 -328 5793 5731 2209 103 7 0 chr13 49211633 49211923 -70532975 - AluSq SINE Alu -19 294 3 1141 74 0 0 chr13 49211924 49212059 -70532839 - AluSq/x SINE Alu -176 136 2 619 164 60 0 chr13 49212498 49212614 -70532284 - L1MB3 LINE L1 -7 6176 6054 2260 95 3 0 chr13 49212884 49213169 -70531729 - AluSx SINE Alu -26 286 1 2297 75 7 3 chr13 49213503 49213797 -70531101 - AluSc SINE Alu -14 295 1 255 281 16 0 chr13 49214016 49214080 -70530818 + CT-rich Low_complexity Low_complexity 3 67 0 231 304 183 9 chr13 49215203 49215318 -70529580 - MIR SINE MIR -120 142 8 1094 241 181 20 chr13 49215636 49216542 -70528356 + L1MEc LINE L1 626 1691 -4705 1052 200 120 4 chr13 49216548 49216823 -70528075 + L1MEc LINE L1 2017 2323 -4073 2114 121 3 19 chr13 49217437 49217750 -70527148 + AluJb SINE Alu 1 308 -4 5688 219 56 79 chr13 49217776 49217823 -70527075 + L1MEc LINE L1 2272 2319 -3896 2013 137 40 0 chr13 49217823 49218123 -70526775 + AluSx SINE Alu 1 312 0 5688 219 56 79 chr13 49218123 49218168 -70526730 + L1MEc LINE L1 2319 2363 -3852 1924 127 25 74 chr13 49218168 49218491 -70526407 + AluJb SINE Alu 1 307 -5 5688 219 56 79 chr13 49218491 49218854 -70526044 + L1MEc LINE L1 2363 2733 -3482 910 129 204 30 chr13 49218854 49219055 -70525843 + MER46A DNA MER2_type 1 236 0 5688 219 56 79 chr13 49219055 49219121 -70525777 + L1MEc LINE L1 2733 2799 -3416 888 215 126 0 chr13 49219121 49219312 -70525586 + MER58C DNA MER1_type 1 215 0 5688 219 56 79 chr13 49219312 49220026 -70524872 + L1MEc LINE L1 2799 3528 -2687 1983 141 36 10 chr13 49220026 49220330 -70524568 + AluJb SINE Alu 1 312 0 5688 219 56 79 chr13 49220330 49221134 -70523764 + L1MEc LINE L1 3528 4269 -1946 535 221 18 55 chr13 49221141 49221304 -70523594 - L1ME1 LINE L1 -124 6042 5886 1587 141 102 18 chr13 49221395 49221678 -70523220 - AluJo SINE Alu -3 309 3 182 238 0 0 chr13 49221686 49221728 -70523170 + L2 LINE L2 2216 2257 -1057 476 139 89 0 chr13 49222753 49222832 -70522066 + L2 LINE L2 3228 3313 0 2289 88 14 3 chr13 49222896 49223193 -70521705 + AluSq SINE Alu 1 300 -13 540 269 87 0 chr13 49224842 49224991 -70519907 + MLT1J2 LTR MaLR 3 164 -286 234 271 17 0 chr13 49225161 49225220 -70519678 + MLT1J1 LTR MaLR 384 443 -3 263 269 29 19 chr13 49225701 49225805 -70519093 + MIR3 SINE MIR 103 207 -1 2146 98 3 17 chr13 49225845 49226140 -70518758 - AluSc SINE Alu -18 291 1 2056 108 0 46 chr13 49226147 49226470 -70518428 - AluSp SINE Alu -5 308 1 909 201 12 0 chr13 49226683 49226852 -70518046 - AluJb SINE Alu -10 302 132 594 253 46 4 chr13 49227564 49227836 -70517062 + L1ME4a LINE L1 5716 6035 -86 1792 171 0 13 chr13 49228300 49228605 -70516293 + AluJb SINE Alu 1 301 -11 347 333 29 0 chr13 49229099 49229204 -70515694 - MIR3 SINE MIR -16 192 85 226 205 238 41 chr13 49229891 49230013 -70514885 + L1ME4a LINE L1 5598 5743 -378 306 245 39 90 chr13 49230141 49230296 -70514602 + L1ME4a LINE L1 5968 6114 -7 2160 126 0 10 chr13 49230668 49230977 -70513921 - AluSx SINE Alu -6 306 1 419 257 57 0 chr13 49231104 49231209 -70513689 + MIR SINE MIR 151 261 -1 886 206 7 7 chr13 49231311 49231466 -70513432 + FRAM SINE Alu 1 155 -11 1070 268 342 12 chr13 49231775 49232693 -70512205 + L2 LINE L2 1259 2479 -835 815 274 131 8 chr13 49232693 49232938 -70511960 + LTR50 LTR ERVL 5 279 -516 565 275 80 13 chr13 49232995 49233244 -70511654 + LTR50 LTR ERVL 271 483 -40 879 252 215 27 chr13 49233244 49233774 -70511124 + L2 LINE L2 2679 3313 0 1311 268 142 18 chr13 49233823 49234476 -70510422 + HAL1b LINE L1 84 817 -531 736 247 188 12 chr13 49234478 49234700 -70510198 + HAL1b LINE L1 870 1052 -296 2388 62 3 32 chr13 49234700 49235009 -70509889 + AluY SINE Alu 1 300 -11 736 247 188 12 chr13 49235009 49235191 -70509707 + HAL1b LINE L1 1052 1345 -3 624 76 9 57 chr13 49235221 49235326 -70509572 + L1MB2 LINE L1 6070 6169 -2 26 50 0 0 chr13 49235326 49235366 -70509532 + AT_rich Low_complexity Low_complexity 1 40 0 357 267 76 8 chr13 49235968 49236099 -70508799 - L1ME LINE L1 -386 5735 5596 2327 88 0 10 chr13 49236128 49236435 -70508463 - AluSg SINE Alu -4 306 3 2692 16 7 3 chr13 49236674 49236979 -70507919 - AluY SINE Alu -5 306 1 23 0 0 0 chr13 49238241 49238264 -70506634 + AT_rich Low_complexity Low_complexity 1 23 0 1027 235 268 20 chr13 49238688 49238860 -70506038 + MLT1G LTR MaLR 1 129 -461 2086 109 0 4 chr13 49238860 49239135 -70505763 + AluSc SINE Alu 3 276 -33 1027 235 268 20 chr13 49239135 49239413 -70505485 + MLT1G LTR MaLR 129 563 -27 228 265 148 43 chr13 49239949 49240111 -70504787 + L2 LINE L2 2056 2234 -1080 331 243 120 117 chr13 49241600 49241900 -70502998 - L1M2 LINE L1 -5832 1017 717 257 287 21 35 chr13 49242084 49242227 -70502671 + C-rich Low_complexity Low_complexity 4 144 0 36 53 0 0 chr13 49242955 49243012 -70501886 + GC_rich Low_complexity Low_complexity 1 57 0 333 0 0 0 chr13 49248735 49248772 -70496126 + (TG)n Simple_repeat Simple_repeat 2 38 0 315 0 0 0 chr13 49249484 49249519 -70495379 + (CA)n Simple_repeat Simple_repeat 2 36 0 340 277 208 0 chr13 49252224 49252325 -70492573 - L2 LINE L2 -2 3270 3149 217 213 131 0 chr13 49252819 49252880 -70492018 - L2 LINE L2 -67 3205 3137 531 218 182 12 chr13 49253415 49253585 -70491313 - MIR SINE MIR -43 219 21 403 252 42 70 chr13 49254114 49254257 -70490641 - L2 LINE L2 -2 3270 3132 428 248 99 0 chr13 49254347 49254468 -70490430 - MIR SINE MIR -127 135 3 193 282 59 35 chr13 49254850 49254935 -70489963 - L2 LINE L2 -54 3218 3132 1575 146 59 4 chr13 49254981 49255235 -70489663 - AluJo SINE Alu -44 268 1 1234 162 4 51 chr13 49255619 49255854 -70489044 + AluJb SINE Alu 72 295 -17 22 0 0 0 chr13 49256473 49256495 -70488403 + AT_rich Low_complexity Low_complexity 1 22 0 451 233 76 8 chr13 49256497 49256642 -70488256 - L1ME4a LINE L1 -7 6114 5961 239 248 53 23 chr13 49256674 49256807 -70488091 - L1ME4a LINE L1 -226 5895 5759 206 95 24 0 chr13 49256808 49256850 -70488048 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 236 79 0 0 chr13 49256857 49256895 -70488003 - L1PA3 LINE L1 -3 6152 6115 278 57 0 75 chr13 49257024 49257077 -70487821 - L1MA3 LINE L1 0 6305 6257 1960 130 7 10 chr13 49257089 49257381 -70487517 - AluJb SINE Alu -19 293 3 318 80 0 0 chr13 49258154 49258204 -70486694 + (CA)n Simple_repeat Simple_repeat 2 51 0 1677 158 14 21 chr13 49260039 49260174 -70484724 + AluJo SINE Alu 1 135 -177 2200 103 0 7 chr13 49260174 49260510 -70484388 + AluY SINE Alu 1 311 0 1677 158 14 21 chr13 49260510 49260658 -70484240 + AluJo SINE Alu 135 282 -30 207 0 0 0 chr13 49260662 49260685 -70484213 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2315 97 7 0 chr13 49261225 49261523 -70483375 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr13 49262047 49262067 -70482831 + (T)n Simple_repeat Simple_repeat 1 20 0 359 243 56 47 chr13 49262512 49262619 -70482279 + MIR SINE MIR 20 127 -81 247 214 159 76 chr13 49262875 49263085 -70481813 - L1ME4a LINE L1 -1 6120 5878 2208 135 0 0 chr13 49263085 49263397 -70481501 - AluSx SINE Alu 0 312 1 247 214 159 76 chr13 49263397 49263475 -70481423 - L1ME4a LINE L1 -243 5878 5808 28 86 0 0 chr13 49263475 49263545 -70481353 + AT_rich Low_complexity Low_complexity 1 70 0 218 276 19 29 chr13 49263667 49263772 -70481126 + (TATG)n Simple_repeat Simple_repeat 4 107 0 2173 113 7 10 chr13 49263935 49264236 -70480662 - AluSg SINE Alu -10 300 1 436 271 117 12 chr13 49264247 49264487 -70480411 - L1ME4a LINE L1 -346 5775 5511 185 343 20 29 chr13 49265231 49265333 -70479565 + MIR SINE MIR 6 106 -156 243 230 0 115 chr13 49265588 49265675 -70479223 - L2 LINE L2 -1 3271 3195 333 212 25 8 chr13 49266377 49266495 -70478403 + CT-rich Low_complexity Low_complexity 2 121 0 1492 267 50 16 chr13 49267265 49267703 -70477195 + L3b LINE CR1 1121 1573 -10 1235 191 19 32 chr13 49268457 49268508 -70476390 - L1MB2 LINE L1 0 6171 6121 1904 147 0 19 chr13 49268508 49268815 -70476083 - AluJo SINE Alu -11 301 1 1235 191 19 32 chr13 49268815 49269078 -70475820 - L1MB2 LINE L1 -50 6121 5861 2138 151 7 6 chr13 49269080 49269542 -70475356 - L1MB2 LINE L1 -546 5625 5161 297 0 0 0 chr13 49269670 49269703 -70475195 + (CA)n Simple_repeat Simple_repeat 2 34 0 305 215 115 62 chr13 49271796 49271926 -70472972 - HAL1b LINE L1 -7 1341 1205 227 213 0 0 chr13 49272012 49272059 -70472839 + (TA)n Simple_repeat Simple_repeat 1 47 0 180 333 0 0 chr13 49272150 49272204 -70472694 + MIR SINE MIR 197 250 -12 649 280 86 48 chr13 49272205 49272659 -70472239 - L1MC/D LINE L1 -2016 5792 5322 2149 106 0 48 chr13 49272863 49273174 -70471724 - AluSx SINE Alu -14 298 3 225 0 0 0 chr13 49274320 49274345 -70470553 + (T)n Simple_repeat Simple_repeat 1 25 0 1437 86 0 16 chr13 49275149 49275376 -70469522 + AluY SINE Alu 101 324 0 275 350 32 32 chr13 49277602 49277725 -70467173 - L2 LINE L2 -11 3302 3180 996 262 73 4 chr13 49278752 49279027 -70465871 - L2 LINE L2 -480 2834 2541 192 77 0 0 chr13 49279300 49279326 -70465572 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 224 293 185 19 chr13 49279649 49279806 -70465092 - MIR SINE MIR -42 220 38 503 267 153 6 chr13 49279854 49280030 -70464868 + MIR SINE MIR 52 253 -9 2255 119 3 0 chr13 49280850 49281152 -70463746 - AluSq SINE Alu -10 303 1 2718 219 78 58 chr13 49281385 49282410 -70462488 + MER69 DNA AcHobo 89 1133 -1393 580 128 0 0 chr13 49282411 49282505 -70462393 + L1PA16 LINE L1 6057 6150 -16 2303 111 0 9 chr13 49282512 49282827 -70462071 + AluSx SINE Alu 1 312 0 7880 49 1 0 chr13 49282877 49284642 -70460256 + L1PA6 LINE L1 4387 6154 0 626 171 92 12 chr13 49284701 49284865 -70460033 + MER69 DNA AcHobo 2347 2523 -3 346 319 157 0 chr13 49284954 49285120 -70459778 + MIR SINE MIR 60 251 -11 234 0 0 0 chr13 49285398 49285424 -70459474 + (CA)n Simple_repeat Simple_repeat 2 27 0 2451 93 0 0 chr13 49285949 49286260 -70458638 + AluSx SINE Alu 2 312 0 208 211 42 99 chr13 49286893 49286964 -70457934 - L2 LINE L2 -5 3308 3242 1695 153 7 45 chr13 49286978 49287286 -70457612 - AluJo SINE Alu -16 296 1 1404 117 21 0 chr13 49287573 49287812 -70457086 - L1MA4 LINE L1 -4 6296 6053 23 54 0 0 chr13 49288351 49288388 -70456510 + AT_rich Low_complexity Low_complexity 1 37 0 2459 61 0 10 chr13 49288787 49289099 -70455799 + AluSc SINE Alu 1 309 0 296 328 31 23 chr13 49289250 49289378 -70455520 + L2 LINE L2 3138 3266 -6 247 380 47 22 chr13 49291518 49291879 -70453019 + L2 LINE L2 2283 2652 -662 2992 112 2 0 chr13 49292088 49292527 -70452371 - L1MB3 LINE L1 -8 6175 5736 212 326 32 32 chr13 49292589 49292684 -70452214 + L2 LINE L2 2712 2806 -508 282 314 95 19 chr13 49292741 49292846 -70452052 - L2 LINE L2 -3 3269 3157 2005 149 3 0 chr13 49293496 49293784 -70451114 - AluSx SINE Alu -23 289 1 2261 103 0 28 chr13 49295488 49295808 -70449090 + AluJb SINE Alu 1 311 -1 207 0 0 0 chr13 49296516 49296539 -70448359 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 216 149 0 85 chr13 49296835 49296882 -70448016 + L2 LINE L2 3271 3313 0 1874 156 69 0 chr13 49297222 49297511 -70447387 - AluSx SINE Alu -3 309 1 41007 30 21 2 chr13 49297823 49303859 -70441039 - L1PA2 LINE L1 0 6155 1 233 160 20 0 chr13 49306040 49306090 -70438808 - MLT2B1 LTR ERVL 0 554 504 1379 206 92 70 chr13 49306131 49306588 -70438310 - MLT2B1 LTR ERVL -53 467 1 25 0 0 0 chr13 49306713 49306738 -70438160 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr13 49307775 49307815 -70437083 + AT_rich Low_complexity Low_complexity 1 40 0 701 142 17 50 chr13 49308000 49308120 -70436778 - FLAM_C SINE Alu -11 132 17 377 258 112 102 chr13 49309973 49310365 -70434533 + MLT1L LTR MaLR 6 401 -214 901 171 84 46 chr13 49310706 49310901 -70433997 - MER63 DNA MER1_type -16 1045 838 1651 153 13 67 chr13 49310901 49311215 -70433683 - AluJo SINE Alu -15 297 1 901 171 84 46 chr13 49311215 49311258 -70433640 - MER63 DNA MER1_type -223 838 798 2595 96 2 5 chr13 49311258 49311653 -70433245 - L1M2 LINE L1 -584 5707 5314 1738 179 4 0 chr13 49312635 49312915 -70431983 - AluJo SINE Alu -31 281 1 1525 184 70 27 chr13 49313373 49313704 -70431194 - MLT1A1 LTR MaLR 0 365 21 744 185 99 0 chr13 49313719 49313870 -70431028 - AluJo SINE Alu -97 215 50 553 259 17 32 chr13 49314089 49314253 -70430645 - MIR SINE MIR -66 142 3 222 241 43 139 chr13 49315948 49316135 -70428763 + MIR SINE MIR 21 190 -18 1986 102 88 0 chr13 49316759 49317033 -70427865 - AluSx SINE Alu -14 298 1 1295 137 13 4 chr13 49317049 49317275 -70427623 - L1MB3 LINE L1 -7 6176 5949 494 274 173 10 chr13 49319189 49319397 -70425501 + MIR SINE MIR 7 248 -14 1430 233 7 3 chr13 49320394 49320686 -70424212 + AluJb SINE Alu 2 294 -18 324 0 0 0 chr13 49320689 49320725 -70424173 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1928 148 122 26 chr13 49320860 49321286 -70423612 - MLT1C LTR MaLR 0 467 1 571 284 42 21 chr13 49322166 49322402 -70422496 + L1ME4a LINE L1 5637 5877 -244 1963 159 0 0 chr13 49322506 49322802 -70422096 - AluJo SINE Alu -16 296 1 203 179 0 0 chr13 49323890 49323929 -70420969 + T-rich Low_complexity Low_complexity 3 41 0 289 100 0 0 chr13 49324934 49324974 -70419924 + MADE1 DNA Mariner 1 40 -40 356 241 73 125 chr13 49325084 49325316 -70419582 - L1MC4 LINE L1 -1 8041 7822 753 237 12 43 chr13 49325353 49325610 -70419288 - L1ME2 LINE L1 -10 6154 5906 880 103 0 0 chr13 49325777 49325894 -70419004 - AluSq/x SINE Alu -196 117 1 268 284 0 0 chr13 49326342 49326409 -70418489 + CT-rich Low_complexity Low_complexity 2 68 0 2140 136 0 0 chr13 49327813 49328107 -70416791 - AluSx SINE Alu -18 294 1 265 327 0 19 chr13 49328219 49328326 -70416572 - L3b LINE CR1 -202 1381 1277 2424 80 0 3 chr13 49329128 49329427 -70415471 + AluSc SINE Alu 1 298 -11 332 48 0 0 chr13 49329639 49329681 -70415217 + MER4E LTR ERV1 653 694 -72 201 361 0 0 chr13 49329821 49329882 -70415016 + MIR SINE MIR 42 102 -106 41 48 0 0 chr13 49330204 49330266 -70414632 + AT_rich Low_complexity Low_complexity 1 62 0 427 264 158 10 chr13 49330318 49330610 -70414288 - L1MEc LINE L1 -4709 1687 1353 7076 227 55 26 chr13 49330614 49335096 -70409802 + L1MB7 LINE L1 118 4827 -1817 1110 142 124 34 chr13 49335096 49335294 -70409604 + Tigger2 DNA MER2_type 1 180 -2538 1868 162 0 9 chr13 49335294 49335609 -70409289 - AluJb SINE Alu 0 312 1 1110 142 124 34 chr13 49335609 49335792 -70409106 + Tigger2 DNA MER2_type 180 2718 0 1210 170 9 9 chr13 49335845 49336057 -70408841 - AluJb SINE Alu -16 296 85 4484 187 36 9 chr13 49336057 49337808 -70407090 + L1MB7 LINE L1 4870 6663 -19 1373 178 127 0 chr13 49337810 49338164 -70406734 + L1MC3 LINE L1 7387 7785 0 1786 154 14 7 chr13 49338169 49338461 -70406437 + AluSq SINE Alu 1 294 -19 667 108 0 0 chr13 49338688 49338790 -70406108 + L1PA14 LINE L1 6060 6161 0 1163 167 152 60 chr13 49339390 49339659 -70405239 + AluJo SINE Alu 1 294 -8 639 197 57 8 chr13 49343134 49343256 -70401642 - L2 LINE L2 -4 3309 3182 746 225 24 62 chr13 49343256 49343465 -70401433 + MIR SINE MIR 46 246 -16 198 242 45 45 chr13 49343971 49344037 -70400861 + MIR3 SINE MIR 100 165 -43 390 282 122 19 chr13 49344846 49345002 -70399896 - MIR3 SINE MIR -5 203 32 221 267 0 0 chr13 49345237 49345282 -70399616 - MIR SINE MIR -71 137 93 222 259 17 0 chr13 49345295 49345353 -70399545 - L2 LINE L2 -6 3307 3249 2099 134 0 0 chr13 49346487 49346791 -70398107 - AluSx SINE Alu 0 304 1 180 0 0 0 chr13 49347141 49347161 -70397737 + (TA)n Simple_repeat Simple_repeat 1 20 0 203 265 0 0 chr13 49347171 49347220 -70397678 + (TATG)n Simple_repeat Simple_repeat 3 51 0 852 124 35 41 chr13 49347737 49347906 -70396992 + L1MB2 LINE L1 5624 5791 -380 1885 123 17 3 chr13 49347922 49348224 -70396674 + L1MB2 LINE L1 5864 6169 -2 618 172 95 0 chr13 49348229 49348345 -70396553 + MER5B DNA MER1_type 52 178 0 21 36 0 0 chr13 49348847 49348875 -70396023 + AT_rich Low_complexity Low_complexity 1 28 0 2457 160 20 0 chr13 49348904 49349442 -70395456 - L1MA9 LINE L1 -22 6290 5646 180 0 0 0 chr13 49349462 49349482 -70395416 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2410 69 36 3 chr13 49350262 49350595 -70394303 + THE1A LTR MaLR 1 344 -11 12016 78 11 3 chr13 49350614 49352182 -70392716 + THE1A-int LTR MaLR 1 1580 0 2724 79 0 38 chr13 49352182 49352419 -70392479 + THE1A LTR MaLR 1 221 -134 2367 101 0 0 chr13 49352419 49352715 -70392183 + AluSg SINE Alu 4 299 -11 2724 79 0 38 chr13 49352715 49352846 -70392052 + THE1A LTR MaLR 221 355 0 210 245 41 0 chr13 49352968 49353017 -70391881 + L2 LINE L2 3262 3312 -1 516 258 18 42 chr13 49353110 49353277 -70391621 + MIR SINE MIR 46 208 -54 201 39 0 0 chr13 49353746 49353772 -70391126 + (TG)n Simple_repeat Simple_repeat 2 27 0 374 250 67 0 chr13 49355127 49355231 -70389667 + MIR SINE MIR 93 203 -59 425 295 87 35 chr13 49355540 49355752 -70389146 - MIR3 SINE MIR -42 220 1 341 226 39 59 chr13 49356734 49356836 -70388062 + L2 LINE L2 3209 3308 -5 287 176 0 59 chr13 49356887 49356972 -70387926 + L1MC5 LINE L1 7832 7911 -50 2198 110 0 0 chr13 49357320 49357611 -70387287 - AluSq SINE Alu -22 291 1 2120 146 0 3 chr13 49357616 49357925 -70386973 - AluSx SINE Alu -4 308 1 1769 158 3 24 chr13 49358462 49358754 -70386144 + AluJo SINE Alu 6 291 -21 216 97 0 0 chr13 49358754 49358785 -70386113 + (TAAG)n Simple_repeat Simple_repeat 1 31 0 3419 186 52 14 chr13 49358802 49359431 -70385467 + MER82 DNA MER2_type 1 653 0 23 0 0 0 chr13 49359598 49359621 -70385277 + AT_rich Low_complexity Low_complexity 1 23 0 5987 118 43 4 chr13 49360540 49361478 -70383420 + Tigger3b DNA MER2_type 1 974 -257 588 275 81 31 chr13 49362265 49362523 -70382375 + L2 LINE L2 3041 3311 -2 507 333 24 6 chr13 49362765 49362930 -70381968 + MIR3 SINE MIR 31 198 -10 243 0 0 0 chr13 49363335 49363362 -70381536 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 2020 128 0 4 chr13 49363362 49363643 -70381255 - AluSx SINE Alu -32 280 1 24 0 0 0 chr13 49363643 49363667 -70381231 + AT_rich Low_complexity Low_complexity 1 24 0 1980 141 16 0 chr13 49363783 49364088 -70380810 - AluSx SINE Alu -1 311 2 23 54 0 0 chr13 49365036 49365073 -70379825 + AT_rich Low_complexity Low_complexity 1 37 0 329 212 106 0 chr13 49365341 49365426 -70379472 + MER103 DNA DNA 10 103 -63 423 279 55 38 chr13 49365620 49365803 -70379095 + L2 LINE L2 2772 2957 -357 2138 103 7 17 chr13 49365818 49366108 -70378790 - AluSc SINE Alu -18 291 5 210 188 42 42 chr13 49366744 49366792 -70378106 - MIR3 SINE MIR -49 159 112 303 208 56 0 chr13 49366799 49366871 -70378027 - MER91C DNA MER1_type -32 108 33 214 176 0 0 chr13 49366881 49366915 -70377983 - MIR SINE MIR -89 119 86 324 321 109 30 chr13 49367040 49367305 -70377593 + L3 LINE CR1 833 1118 -459 255 159 23 0 chr13 49367401 49367445 -70377453 + MIR SINE MIR 218 262 0 327 179 0 0 chr13 49367643 49367710 -70377188 + CT-rich Low_complexity Low_complexity 3 69 0 568 252 189 37 chr13 49367862 49368132 -70376766 - L2 LINE L2 -4 3268 2958 1838 181 0 10 chr13 49368203 49368506 -70376392 - AluJo SINE Alu -9 303 4 284 318 63 16 chr13 49369662 49369788 -70375110 - L2 LINE L2 -18 3295 3164 803 254 46 171 chr13 49369821 49370582 -70374316 - L2 LINE L2 -848 2466 1801 333 0 0 0 chr13 49371876 49371913 -70372985 + (CA)n Simple_repeat Simple_repeat 2 38 0 2544 62 3 3 chr13 49372089 49372394 -70372504 + AluSp SINE Alu 1 305 -8 290 160 0 53 chr13 49373085 49373160 -70371738 - L1ME4a LINE L1 -3 6118 6048 240 35 0 0 chr13 49373818 49373847 -70371051 + (CA)n Simple_repeat Simple_repeat 1 29 0 7839 46 0 0 chr13 49373891 49374962 -70369936 + L1PA6 LINE L1 5078 6148 -6 473 291 16 0 chr13 49375153 49375280 -70369618 - L1ME3A LINE L1 -98 6072 5944 843 277 182 9 chr13 49375330 49375872 -70369026 + LTR50 LTR ERVL 46 771 -24 868 292 82 19 chr13 49376032 49376347 -70368551 - HAL1 LINE L1 -529 1978 1644 1149 257 82 14 chr13 49376359 49377340 -70367558 - HAL1 LINE L1 -913 1594 419 947 257 28 28 chr13 49377389 49377673 -70367225 - HAL1 LINE L1 -2223 284 1 216 0 0 0 chr13 49377702 49377726 -70367172 + (T)n Simple_repeat Simple_repeat 1 24 0 1970 65 19 27 chr13 49377847 49378107 -70366791 - AluY SINE Alu -15 296 39 1158 295 53 28 chr13 49379144 49379652 -70365246 + MLT1K LTR MaLR 66 586 -2 2429 71 0 3 chr13 49379980 49380276 -70364622 - AluY SINE Alu -16 295 1 777 98 0 0 chr13 49380693 49380805 -70364093 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 2115 98 14 4 chr13 49380807 49381084 -70363814 - AluSq SINE Alu -32 281 2 385 190 25 0 chr13 49381169 49381248 -70363650 - L1MB7 LINE L1 0 6184 6104 368 125 80 0 chr13 49381423 49381511 -70363387 + L1ME4a LINE L1 6023 6117 -4 2208 86 0 24 chr13 49381675 49381989 -70362909 - AluSq SINE Alu 0 307 1 25 31 0 0 chr13 49381990 49382022 -70362876 + AT_rich Low_complexity Low_complexity 1 32 0 2186 62 0 0 chr13 49382680 49382985 -70361913 - AluY SINE Alu 0 331 27 22 35 0 0 chr13 49383432 49383461 -70361437 + AT_rich Low_complexity Low_complexity 1 29 0 246 32 0 0 chr13 49383922 49383953 -70360945 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1874 124 19 0 chr13 49383964 49384231 -70360667 - AluSx SINE Alu -40 272 1 403 334 45 51 chr13 49385638 49385875 -70359023 + MIR SINE MIR 3 256 -6 1885 143 6 30 chr13 49387452 49387781 -70357117 - L1MA7 LINE L1 -2 6289 5969 264 330 77 19 chr13 49389911 49390120 -70354778 - L2 LINE L2 -969 2345 2125 2444 78 0 0 chr13 49390941 49391235 -70353663 + AluSc SINE Alu 1 294 -15 1556 178 36 7 chr13 49391530 49391811 -70353087 + AluJo SINE Alu 5 293 -19 995 329 55 31 chr13 49392565 49393076 -70351822 - L3 LINE CR1 -517 1060 538 5741 113 19 7 chr13 49393082 49393952 -70350946 - Tigger3(Golem) DNA MER2_type -1 3028 2148 588 198 0 27 chr13 49393981 49394092 -70350806 - Tigger3(Golem) DNA MER2_type -2921 108 1 268 254 11 0 chr13 49394686 49394863 -70350035 + (CA)n Simple_repeat Simple_repeat 2 180 0 844 203 92 0 chr13 49395016 49395179 -70349719 + MER45A DNA AcHobo 1 178 0 4222 138 14 60 chr13 49395411 49396134 -70348764 - LTR8 LTR ERV1 0 691 2 2354 108 0 9 chr13 49396201 49396516 -70348382 - AluSx SINE Alu 0 312 1 763 224 35 80 chr13 49396584 49396897 -70348001 - L2 LINE L2 -10 3303 3005 326 229 0 12 chr13 49397741 49397824 -70347074 + LTR33A LTR ERVL 426 507 -16 1220 168 84 4 chr13 49398059 49398309 -70346589 - L1MA9 LINE L1 -32 6280 6011 1404 124 10 0 chr13 49398345 49398554 -70346344 - L1PA14 LINE L1 0 6161 5951 380 265 12 59 chr13 49398718 49398888 -70346010 - HAL1b LINE L1 -437 911 750 234 191 0 0 chr13 49399249 49399296 -70345602 + T-rich Low_complexity Low_complexity 1 47 0 410 318 112 12 chr13 49399355 49399597 -70345301 - HAL1 LINE L1 -578 1929 1664 277 299 57 25 chr13 49400310 49400467 -70344431 - MIR3 SINE MIR -27 181 20 306 0 0 0 chr13 49401416 49401450 -70343448 + (A)n Simple_repeat Simple_repeat 1 34 0 317 339 162 44 chr13 49401941 49402330 -70342568 + L2 LINE L2 2824 3258 -14 1605 312 71 14 chr13 49402584 49403242 -70341656 - L3 LINE CR1 -2 1575 880 21 0 0 0 chr13 49403409 49403430 -70341468 + AT_rich Low_complexity Low_complexity 1 21 0 311 308 9 0 chr13 49403622 49403729 -70341169 + MARNA DNA Mariner 141 248 -338 27 0 0 0 chr13 49404284 49404311 -70340587 + AT_rich Low_complexity Low_complexity 1 27 0 4314 106 21 32 chr13 49405352 49406128 -70338770 - L1PB1 LINE L1 -16 6150 5333 558 220 57 40 chr13 49407279 49407362 -70337536 - MER104 DNA Tc2 -1718 180 100 1697 194 40 48 chr13 49407362 49407760 -70337138 - MLT2C1 LTR ERVL -2 395 1 558 220 57 40 chr13 49407760 49407853 -70337045 - MER104 DNA Tc2 -1798 100 1 282 262 164 16 chr13 49407980 49408102 -70336796 - MIR3 SINE MIR -56 152 13 868 281 83 67 chr13 49408389 49408884 -70336014 + LTR33A LTR ERVL 3 505 -18 1474 142 46 0 chr13 49408982 49409242 -70335656 - MSTB LTR MaLR 0 426 155 975 113 0 0 chr13 49409419 49409561 -70335337 - MSTB LTR MaLR -284 142 1 198 337 22 45 chr13 49409661 49409750 -70335148 - MIR SINE MIR -91 117 31 319 341 121 14 chr13 49409759 49409982 -70334916 + MIR SINE MIR 6 252 -10 2283 104 10 0 chr13 49410158 49410466 -70334432 + AluSx SINE Alu 1 311 -1 240 192 0 19 chr13 49411807 49411859 -70333039 + CT-rich Low_complexity Low_complexity 2 52 0 26826 93 3 15 chr13 49411905 49416925 -70327973 - L1PA7 LINE L1 0 6154 1178 3502 243 58 66 chr13 49417181 49418893 -70326005 + L1ME4a LINE L1 44 1767 -4313 2138 103 14 7 chr13 49418893 49419183 -70325715 + AluSc SINE Alu 1 292 -17 3502 243 58 66 chr13 49419183 49419287 -70325611 + L1ME4a LINE L1 1767 1870 -4210 270 0 0 0 chr13 49419287 49419317 -70325581 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 702 113 0 0 chr13 49419316 49419422 -70325476 + (TA)n Simple_repeat Simple_repeat 1 106 0 3502 243 58 66 chr13 49419317 49419467 -70325431 + L1ME4a LINE L1 1870 2020 -4060 2204 104 16 0 chr13 49419467 49419774 -70325124 + AluSx SINE Alu 1 312 0 3502 243 58 66 chr13 49419774 49421223 -70323675 + L1ME4a LINE L1 2020 3289 -2791 28 29 0 0 chr13 49421418 49421453 -70323445 + AT_rich Low_complexity Low_complexity 1 35 0 8648 178 28 8 chr13 49421453 49423607 -70321291 - L1PA15 LINE L1 -1 6164 3997 2221 101 0 7 chr13 49423607 49423903 -70320995 - AluSq SINE Alu -19 294 1 8648 178 28 8 chr13 49423903 49424335 -70320563 - L1PA15 LINE L1 -2168 3997 3575 4863 126 1 3 chr13 49424402 49425138 -70319760 - L1PA16 LINE L1 -9 6157 5423 2160 200 68 29 chr13 49425139 49425940 -70318958 + L1ME4a LINE L1 5001 5876 -224 668 321 127 3 chr13 49425998 49426359 -70318539 - L2 LINE L2 -969 2345 1940 28 29 0 0 chr13 49426516 49426551 -70318347 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr13 49426673 49426719 -70318179 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr13 49426906 49426936 -70317962 + AT_rich Low_complexity Low_complexity 1 30 0 388 247 119 44 chr13 49428054 49428226 -70316672 + MIR SINE MIR 6 184 -63 545 280 119 13 chr13 49430041 49430277 -70314621 + MIR SINE MIR 2 262 0 247 229 0 0 chr13 49430530 49430591 -70314307 + L1ME4a LINE L1 5922 5982 -73 1462 130 56 53 chr13 49431510 49431833 -70313065 + MER33 DNA MER1_type 1 324 0 350 262 56 9 chr13 49431862 49431969 -70312929 + MIR SINE MIR 69 180 -82 32 0 0 0 chr13 49431982 49432014 -70312884 + AT_rich Low_complexity Low_complexity 1 32 0 4663 225 45 18 chr13 49433499 49434215 -70310683 + L1M4 LINE L1 3317 4012 -2134 1981 148 0 3 chr13 49434215 49434528 -70310370 + AluSx SINE Alu 1 312 0 4663 225 45 18 chr13 49434528 49435327 -70309571 + L1M4 LINE L1 4012 4948 -1198 187 365 75 13 chr13 49436227 49436386 -70308512 - L2 LINE L2 -996 2318 2150 3481 137 9 6 chr13 49436537 49437061 -70307837 + MER1A DNA MER1_type 2 527 0 1738 165 41 48 chr13 49437624 49438017 -70306881 - MLT1B LTR MaLR 0 390 1 225 233 0 0 chr13 49438050 49438093 -70306805 + L2 LINE L2 3267 3309 -4 375 235 151 17 chr13 49438433 49438552 -70306346 - MIR3 SINE MIR -59 149 15 2975 220 56 32 chr13 49439205 49440801 -70304097 - L1ME1 LINE L1 -4 6162 4532 395 219 144 64 chr13 49440860 49441047 -70303851 - Charlie7 DNA MER1_type -2367 245 44 358 312 86 62 chr13 49442127 49442250 -70302648 + L2 LINE L2 2723 2841 -472 2011 132 3 14 chr13 49442250 49442546 -70302352 - AluSx SINE Alu -19 293 1 358 312 86 62 chr13 49442546 49442915 -70301983 + L2 LINE L2 2841 3242 -71 1460 111 0 0 chr13 49442930 49443119 -70301779 + AluSx SINE Alu 1 189 -123 226 275 33 11 chr13 49443122 49443213 -70301685 + CT-rich Low_complexity Low_complexity 4 96 0 301 310 165 37 chr13 49443241 49443593 -70301305 + L2 LINE L2 2115 2511 -803 694 307 12 90 chr13 49443897 49444242 -70300656 - L2 LINE L2 -12 3260 2943 400 248 64 0 chr13 49445180 49445289 -70299609 - MER46C DNA MER2_type -14 324 209 360 189 144 27 chr13 49445345 49445456 -70299442 - MER46C DNA MER2_type -214 124 1 393 265 16 81 chr13 49445919 49446104 -70298794 + MIR SINE MIR 20 192 -70 248 323 217 5 chr13 49446253 49446442 -70298456 - MIR SINE MIR -12 250 22 1867 137 53 66 chr13 49447037 49447416 -70297482 + THE1C LTR MaLR 2 375 0 387 295 41 16 chr13 49447873 49447995 -70296903 - L2 LINE L2 -5 3267 3143 236 211 9 101 chr13 49448218 49448327 -70296571 + L1MC4 LINE L1 6605 6703 -1339 265 265 229 9 chr13 49448340 49448676 -70296222 - L1ME4a LINE L1 -9 6112 5703 225 172 0 94 chr13 49448704 49448768 -70296130 + T-rich Low_complexity Low_complexity 1 58 0 7716 20 4 0 chr13 49448769 49449790 -70295108 - L1PA3 LINE L1 -3 6152 5130 544 238 20 0 chr13 49449791 49449938 -70294960 - L1ME4a LINE L1 -452 5669 5520 980 92 15 0 chr13 49450047 49450178 -70294720 - AluSc SINE Alu -11 298 166 311 318 70 8 chr13 49450180 49450309 -70294589 - L1ME4a LINE L1 -2413 5395 5259 204 381 138 13 chr13 49450671 49450902 -70293996 - L2 LINE L2 -337 2977 2718 1877 152 42 3 chr13 49451047 49451330 -70293568 + AluJo SINE Alu 1 294 -18 2049 112 0 0 chr13 49451429 49451735 -70293163 + AluSx SINE Alu 14 319 0 380 295 98 23 chr13 49451752 49451925 -70292973 + MIR3 SINE MIR 16 201 -7 2069 109 3 36 chr13 49453035 49453338 -70291560 - AluSq SINE Alu -19 294 2 658 344 113 9 chr13 49453832 49454178 -70290720 + L3 LINE CR1 256 637 -940 317 311 46 76 chr13 49454199 49454437 -70290461 - MLT1I LTR MaLR 0 409 179 315 318 47 56 chr13 49454611 49454718 -70290180 + MIR SINE MIR 40 145 -63 541 99 0 12 chr13 49455451 49455532 -70289366 + MADE1 DNA Mariner 1 80 0 2533 21 0 0 chr13 49455554 49455838 -70289060 - AluYb8 SINE Alu 0 318 35 281 310 51 58 chr13 49455839 49455900 -70288998 - HAL1b LINE L1 -630 718 658 1445 188 75 10 chr13 49455900 49456193 -70288705 - AluJb SINE Alu 0 312 1 281 310 51 58 chr13 49456193 49456405 -70288493 - HAL1b LINE L1 -690 658 447 396 321 91 0 chr13 49460505 49460670 -70284228 - MIR3 SINE MIR -16 192 13 279 235 136 0 chr13 49460749 49460830 -70284068 - MIR SINE MIR -87 175 84 1613 63 0 5 chr13 49461120 49461325 -70283573 - L1P2 LINE L1 -349 5805 5602 1920 86 0 0 chr13 49461325 49461546 -70283352 + L1PA6 LINE L1 5912 6143 -11 2297 114 0 0 chr13 49462007 49462314 -70282584 - AluSg SINE Alu -3 307 1 1661 174 11 3 chr13 49462853 49463150 -70281748 - L1MB2 LINE L1 -121 6047 5736 349 305 33 8 chr13 49463186 49463300 -70281598 + MIR SINE MIR 3 115 -93 25 0 0 0 chr13 49463300 49463325 -70281573 + AT_rich Low_complexity Low_complexity 1 25 0 608 86 0 11 chr13 49463727 49463820 -70281078 + (TCCC)n Simple_repeat Simple_repeat 4 95 0 804 318 25 7 chr13 49463889 49464169 -70280729 - L1ME LINE L1 -441 5729 5445 389 282 86 73 chr13 49464871 49465091 -70279807 - L2 LINE L2 -220 3052 2830 729 279 117 22 chr13 49466105 49466421 -70278477 + MLT1J LTR MaLR 22 367 -144 357 261 112 75 chr13 49466835 49467103 -70277795 - MLT1J LTR MaLR -2 509 232 2735 248 70 32 chr13 49467156 49468031 -70276867 - L1ME3A LINE L1 -9 6161 5254 1142 115 0 0 chr13 49468034 49468190 -70276708 - MLT1B LTR MaLR 0 390 235 1310 264 71 33 chr13 49469036 49469460 -70275438 - LTR16B LTR ERVL -17 447 8 2427 101 0 0 chr13 49469491 49469798 -70275100 + AluSx SINE Alu 1 307 -5 562 271 55 15 chr13 49473609 49473808 -70271090 - MER112 DNA MER1_type -5 255 49 227 83 0 28 chr13 49475098 49475134 -70269764 - LTR27 LTR ERV1 -104 532 498 220 224 0 0 chr13 49476601 49476650 -70268248 + A-rich Low_complexity Low_complexity 1 49 0 190 167 130 0 chr13 49477607 49477661 -70267237 + MIR SINE MIR 40 100 -108 247 239 60 0 chr13 49478070 49478137 -70266761 + L2 LINE L2 3235 3305 -8 211 176 39 0 chr13 49478286 49478337 -70266561 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 399 261 30 52 chr13 49479144 49479278 -70265620 + L2 LINE L2 3142 3272 0 4788 150 73 10 chr13 49479533 49480385 -70264513 - L1MB3 LINE L1 -4 6179 5264 618 88 0 0 chr13 49480385 49480465 -70264433 + MADE1 DNA Mariner 1 80 0 4788 150 73 10 chr13 49480465 49480509 -70264389 - L1MB3 LINE L1 -919 5264 5224 3999 242 21 10 chr13 49480495 49481531 -70263367 - L1MB3 LINE L1 -1556 4590 3543 * 2443 271 102 15 chr13 49481498 49482361 -70262537 - L1MEc LINE L1 -5282 1114 177 * 322 347 33 0 chr13 49482401 49482522 -70262376 - L1MEc LINE L1 -5944 261 137 1707 165 57 9 chr13 49484401 49484717 -70260181 + MLT1C LTR MaLR 2 332 -135 1412 237 15 26 chr13 49484714 49484729 -70260169 + MLT1C LTR MaLR 130 144 -323 * 2532 134 22 6 chr13 49484729 49485088 -70259810 - MLT1A1 LTR MaLR 0 365 1 1412 237 15 26 chr13 49485088 49485414 -70259484 + MLT1C LTR MaLR 144 467 0 328 358 67 65 chr13 49486048 49486512 -70258386 + L2 LINE L2 2804 3268 -4 * 638 284 17 30 chr13 49486510 49486742 -70258156 - L2 LINE L2 0 3313 3085 242 324 112 39 chr13 49486908 49487087 -70257811 - MIR SINE MIR -32 230 39 527 289 22 101 chr13 49487117 49487216 -70257682 - L2 LINE L2 -8 3305 3200 4517 130 25 12 chr13 49487216 49487908 -70256990 + L1MB3 LINE L1 5483 6183 0 527 289 22 101 chr13 49487908 49488085 -70256813 - L2 LINE L2 -113 3200 3051 181 366 24 0 chr13 49489005 49489128 -70255770 - L2 LINE L2 -593 2721 2596 231 61 0 0 chr13 49489956 49489989 -70254909 + (CA)n Simple_repeat Simple_repeat 2 34 0 1298 155 16 52 chr13 49490081 49490333 -70254565 - L1MC/D LINE L1 -570 5789 5547 46 33 0 0 chr13 49490338 49490398 -70254500 + AT_rich Low_complexity Low_complexity 1 60 0 434 183 12 0 chr13 49490551 49490633 -70254265 - MLT1A2 LTR MaLR -4 370 288 1155 163 25 5 chr13 49490830 49491033 -70253865 + MER20 DNA MER1_type 13 219 0 210 97 32 0 chr13 49492148 49492179 -70252719 + MIR SINE MIR 113 144 -118 1477 214 41 6 chr13 49492184 49492502 -70252396 - MER46C DNA MER2_type -7 331 3 24 0 0 0 chr13 49492639 49492663 -70252235 + AT_rich Low_complexity Low_complexity 1 24 0 214 116 93 0 chr13 49492694 49492737 -70252161 + CT-rich Low_complexity Low_complexity 4 50 0 302 159 32 0 chr13 49492772 49492835 -70252063 + CT-rich Low_complexity Low_complexity 3 67 0 222 118 0 0 chr13 49492859 49492893 -70252005 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 204 125 0 0 chr13 49493272 49493304 -70251594 + (CAG)n Simple_repeat Simple_repeat 1 32 0 201 147 0 0 chr13 49493496 49493530 -70251368 + (T)n Simple_repeat Simple_repeat 1 34 0 248 229 128 18 chr13 49494802 49494911 -70249987 - L1ME4a LINE L1 -41 6080 5960 686 296 46 11 chr13 49494998 49495282 -70249616 - L1ME4a LINE L1 -296 5825 5532 225 132 0 0 chr13 49495494 49495532 -70249366 + (T)n Simple_repeat Simple_repeat 1 38 0 200 204 23 0 chr13 49496286 49496330 -70248568 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 1149 280 69 83 chr13 49496892 49497459 -70247439 - MER77 LTR ERV1 -6 599 41 1827 134 3 77 chr13 49497548 49497921 -70246977 - MER4A LTR ERV1 0 664 261 729 81 0 10 chr13 49497921 49498020 -70246878 - MER4A LTR ERV1 -566 98 1 474 292 16 25 chr13 49498331 49498574 -70246324 + L1MDa LINE L1 1857 2108 -4443 2621 160 5 0 chr13 49498671 49499072 -70245826 - MER57A LTR ERV1 0 403 1 210 37 0 0 chr13 49499969 49499996 -70244902 + (TG)n Simple_repeat Simple_repeat 2 28 0 208 213 347 0 chr13 49500728 49500803 -70244095 - MIR SINE MIR -31 231 131 337 289 173 5 chr13 49501168 49501253 -70243645 + L1MC4 LINE L1 7584 7653 -389 189 0 0 0 chr13 49501253 49501274 -70243624 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 337 289 173 5 chr13 49501274 49501396 -70243502 + L1MC4 LINE L1 7653 7826 -216 258 246 97 9 chr13 49501407 49501521 -70243377 + L1MC4 LINE L1 7918 8041 -1 305 191 0 71 chr13 49501557 49501683 -70243215 + T-rich Low_complexity Low_complexity 5 121 0 183 42 0 0 chr13 49502453 49502477 -70242421 + (TA)n Simple_repeat Simple_repeat 1 24 0 2259 141 5 25 chr13 49502529 49502897 -70242001 + MLT1B LTR MaLR 30 390 0 702 292 52 17 chr13 49506169 49506402 -70238496 - MIR SINE MIR -14 248 8 257 250 10 48 chr13 49506837 49506941 -70237957 + MIR SINE MIR 107 206 -56 1790 253 97 4 chr13 49507061 49507536 -70237362 - LTR33 LTR ERVL -2 519 1 1647 261 121 21 chr13 49507856 49508470 -70236428 + L1ME1 LINE L1 83 757 -5313 746 213 53 92 chr13 49508473 49508853 -70236045 + L1ME1 LINE L1 2921 3285 -2795 613 311 58 9 chr13 49508862 49509087 -70235811 - MERVL LTR ERVL -504 4981 4746 324 212 74 50 chr13 49509394 49509566 -70235332 + MLT1J2 LTR MaLR 68 243 -166 241 234 0 65 chr13 49509618 49509695 -70235203 + MLT1J2 LTR MaLR 377 448 -2 270 0 0 0 chr13 49510218 49510248 -70234650 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 184 228 0 0 chr13 49510450 49510497 -70234401 - MIR SINE MIR -108 154 109 3688 130 2 26 chr13 49510609 49511149 -70233749 - MER1A DNA MER1_type 0 527 1 3086 222 60 44 chr13 49511149 49512830 -70232068 + L1ME1 LINE L1 4387 6095 -5 565 302 49 22 chr13 49512898 49513123 -70231775 + MIR SINE MIR 31 261 -1 499 302 31 78 chr13 49513100 49513355 -70231543 - MIR SINE MIR -10 252 10 * 321 202 149 43 chr13 49513514 49513608 -70231290 + MLT1J1 LTR MaLR 3 106 -303 4605 106 120 131 chr13 49513608 49515027 -70229871 + pTR5 LTR ERV1 743 2438 0 389 274 157 24 chr13 49515030 49515302 -70229596 + MLT1J2 LTR MaLR 103 437 -13 1916 110 8 11 chr13 49515548 49515812 -70229086 - AluSg SINE Alu -15 295 33 260 217 27 27 chr13 49516674 49516735 -70228163 - MIR3 SINE MIR -44 164 103 437 277 62 0 chr13 49516735 49516865 -70228033 + MER5C DNA MER1_type 2 139 -185 3255 173 35 21 chr13 49516922 49517574 -70227324 - L1MC3 LINE L1 0 7785 7125 308 202 155 0 chr13 49517580 49517664 -70227234 + MER5C DNA MER1_type 228 324 0 514 250 0 0 chr13 49518001 49518113 -70226785 - LTR16A LTR ERVL -108 342 231 229 258 72 31 chr13 49518280 49518377 -70226521 - LTR16A1 LTR ERVL -356 101 1 589 281 18 6 chr13 49519419 49519590 -70225308 - MIR SINE MIR 0 262 90 407 250 214 0 chr13 49520935 49521047 -70223851 - MIR3 SINE MIR -54 154 19 311 259 15 96 chr13 49521481 49521616 -70223282 - MIR SINE MIR -119 143 20 366 273 93 35 chr13 49521625 49521791 -70223107 - MER5A DNA MER1_type 0 189 1 311 175 9 53 chr13 49523135 49523249 -70221649 + CT-rich Low_complexity Low_complexity 3 111 0 1659 174 18 81 chr13 49523262 49523646 -70221252 + MLT1A2 LTR MaLR 15 374 0 350 136 30 0 chr13 49523900 49523966 -70220932 + CT-rich Low_complexity Low_complexity 3 70 0 606 245 38 6 chr13 49525565 49525724 -70219174 - MIR SINE MIR 0 262 99 457 232 161 0 chr13 49526223 49526335 -70218563 + FLAM_A SINE Alu 4 133 0 180 325 24 12 chr13 49527000 49527083 -70217815 - MIR3 SINE MIR -54 154 71 541 289 39 100 chr13 49528261 49528642 -70216256 - L2 LINE L2 0 3272 2915 315 0 0 0 chr13 49530917 49530952 -70213946 + (TG)n Simple_repeat Simple_repeat 2 36 0 254 284 53 11 chr13 49531986 49532081 -70212817 - L2 LINE L2 -204 3068 2970 261 270 216 9 chr13 49532442 49532517 -70212381 + L2 LINE L2 3138 3196 -76 1847 124 199 10 chr13 49532517 49532823 -70212075 - THE1B LTR MaLR 0 364 1 261 270 216 9 chr13 49532823 49532858 -70212040 + L2 LINE L2 3196 3271 -1 682 291 80 8 chr13 49535353 49535590 -70209308 + MIR SINE MIR 1 254 -8 206 248 30 20 chr13 49535628 49535729 -70209169 + (TTAA)n Simple_repeat Simple_repeat 4 105 0 21 57 0 0 chr13 49535781 49535816 -70209082 + AT_rich Low_complexity Low_complexity 1 35 0 244 336 0 18 chr13 49536875 49536988 -70207910 + (TAG)n Simple_repeat Simple_repeat 2 112 0 518 264 39 0 chr13 49536997 49537126 -70207772 - MIR SINE MIR -31 231 98 312 286 20 0 chr13 49537187 49537285 -70207613 - MIR SINE MIR -46 216 117 398 245 10 10 chr13 49537548 49537646 -70207252 + MER96B DNA MER1_type? 2 99 -318 1010 134 34 0 chr13 49537662 49537811 -70207087 - FRAM SINE Alu -25 151 1 245 165 0 76 chr13 49537874 49537953 -70206945 - MER96B DNA MER1_type? -107 310 238 23 0 0 0 chr13 49538550 49538573 -70206325 + AT_rich Low_complexity Low_complexity 1 23 0 298 291 0 34 chr13 49539442 49539559 -70205339 + MIR SINE MIR 102 214 -48 208 244 202 48 chr13 49540252 49540420 -70204478 - L2 LINE L2 -1 3312 3119 225 0 0 0 chr13 49540990 49541015 -70203883 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 49541235 49541256 -70203642 + AT_rich Low_complexity Low_complexity 1 21 0 336 287 95 26 chr13 49541357 49541518 -70203380 + MIR SINE MIR 42 212 -50 907 254 76 16 chr13 49541913 49542216 -70202682 + L1MEd LINE L1 6 326 -5793 235 300 0 0 chr13 49542305 49542365 -70202533 - L2 LINE L2 -4 3309 3250 252 86 0 0 chr13 49543357 49543392 -70201506 + (A)n Simple_repeat Simple_repeat 1 35 0 287 303 66 41 chr13 49543663 49543785 -70201113 + MIR SINE MIR 23 147 -115 733 284 82 39 chr13 49544260 49544591 -70200307 - L2 LINE L2 0 3313 2969 292 204 0 0 chr13 49544597 49544651 -70200247 + MER94 DNA DNA 81 134 0 512 226 250 0 chr13 49544651 49544815 -70200083 - L2 LINE L2 -517 2797 2593 2115 76 40 43 chr13 49544845 49545148 -70199750 - AluY SINE Alu -8 303 2 188 321 0 0 chr13 49546106 49546162 -70198736 - MIR SINE MIR -157 105 50 465 222 74 43 chr13 49546210 49546372 -70198526 - L1ME4a LINE L1 -11 6110 5944 21 36 0 0 chr13 49546509 49546537 -70198361 + AT_rich Low_complexity Low_complexity 1 28 0 2850 77 3 35 chr13 49546557 49546933 -70197965 - THE1B LTR MaLR 0 364 1 193 313 15 0 chr13 49546968 49547035 -70197863 - MIR SINE MIR -10 252 185 582 250 46 32 chr13 49547115 49547331 -70197567 - L1ME4a LINE L1 -518 5603 5385 2481 75 0 0 chr13 49547407 49547702 -70197196 + AluY SINE Alu 1 295 -16 249 240 31 21 chr13 49547881 49547977 -70196921 + (TA)n Simple_repeat Simple_repeat 2 98 0 523 301 97 47 chr13 49547977 49548642 -70196256 - L1ME4a LINE L1 -157 6033 5327 2242 85 0 31 chr13 49548645 49548962 -70195936 - AluSq SINE Alu 0 308 1 37 86 0 0 chr13 49548972 49549065 -70195833 + AT_rich Low_complexity Low_complexity 1 93 0 382 299 108 19 chr13 49549250 49549564 -70195334 - L1ME4a LINE L1 -2144 4071 3730 7519 182 53 13 chr13 49549579 49549731 -70195167 - L1 LINE L1 -1332 4814 4670 3243 67 0 0 chr13 49549731 49550120 -70194778 + L1PA7 LINE L1 5764 6153 -1 7519 182 53 13 chr13 49550120 49551611 -70193287 - L1 LINE L1 -1476 4670 3105 1158 217 94 8 chr13 49551621 49552004 -70192894 - L1ME4a LINE L1 -1567 4579 4164 946 278 12 12 chr13 49552000 49552331 -70192567 - L1ME4a LINE L1 -2543 3672 3342 * 538 217 46 108 chr13 49552330 49552470 -70192428 - L1MDa LINE L1 -3895 2320 2238 * 1593 190 0 11 chr13 49552470 49552754 -70192144 - AluJo SINE Alu -17 295 15 538 217 46 108 chr13 49552754 49552853 -70192045 - L1MDa LINE L1 -3977 2238 2134 1944 176 0 0 chr13 49553389 49553691 -70191207 - AluJb SINE Alu -10 302 1 719 253 195 34 chr13 49553691 49554019 -70190879 - MLT1J2 LTR MaLR -64 386 6 1347 251 207 50 chr13 49555252 49556311 -70188587 - L2 LINE L2 -145 3168 1251 1312 267 75 3 chr13 49556344 49556733 -70188165 - L2 LINE L2 -464 2850 2434 691 254 119 13 chr13 49557875 49558111 -70186787 + MIR SINE MIR 2 262 0 194 174 22 0 chr13 49558202 49558248 -70186650 + (TA)n Simple_repeat Simple_repeat 2 48 0 981 250 5 5 chr13 49558306 49558494 -70186404 + MER5A DNA MER1_type 1 188 -1 1434 190 4 15 chr13 49558555 49558824 -70186074 + AluJo SINE Alu 11 276 -36 259 278 0 0 chr13 49558922 49558976 -70185922 - L2 LINE L2 -5 3267 3214 836 289 120 56 chr13 49559017 49560470 -70184428 - L1M4 LINE L1 -1324 4822 3464 2034 194 28 0 chr13 49560470 49560825 -70184073 + MLT1A1 LTR MaLR 1 365 0 836 289 120 56 chr13 49560825 49561028 -70183870 - L1M4 LINE L1 -2682 3464 3276 2022 161 0 3 chr13 49561028 49561339 -70183559 - AluJb SINE Alu -2 310 1 836 289 120 56 chr13 49561339 49561750 -70183148 - L1M4 LINE L1 -2870 3276 2631 24 0 0 0 chr13 49562835 49562859 -70182039 + AT_rich Low_complexity Low_complexity 1 24 0 717 118 45 0 chr13 49563548 49563658 -70181240 + AluJo SINE Alu 21 135 -177 3532 177 21 34 chr13 49563662 49564390 -70180508 - L1MA10 LINE L1 -38 6296 5579 457 176 28 142 chr13 49564390 49564566 -70180332 - LTR28 LTR ERV1 0 1020 865 483 238 46 33 chr13 49564631 49564839 -70180059 - LTR1 LTR ERV1 -565 220 70 319 309 58 29 chr13 49564843 49564982 -70179916 + MIR SINE MIR 86 228 -34 2764 162 17 53 chr13 49565649 49566229 -70178669 + MER89 LTR ERV1 1 559 0 425 235 35 0 chr13 49567223 49567308 -70177590 + L2 LINE L2 3147 3234 -38 1897 171 7 3 chr13 49567323 49567632 -70177266 + AluJo SINE Alu 1 310 -2 2318 159 17 26 chr13 49568443 49568872 -70176026 - MSTB LTR MaLR -1 411 1 485 284 56 0 chr13 49569142 49569304 -70175594 + LTR67 LTR ERVL 380 550 -7 246 305 0 49 chr13 49569782 49569864 -70175034 - MIR SINE MIR -124 138 61 602 238 121 29 chr13 49570977 49571183 -70173715 + MIR SINE MIR 26 250 -12 523 261 13 32 chr13 49571737 49571894 -70173004 + MER5A DNA MER1_type 36 189 0 422 320 155 0 chr13 49571903 49572109 -70172789 + MIR SINE MIR 19 256 -6 225 108 0 0 chr13 49572398 49572435 -70172463 + (CA)n Simple_repeat Simple_repeat 2 38 0 1323 239 122 19 chr13 49576592 49576960 -70167938 + MLT1H LTR MaLR 3 408 -141 763 323 18 4 chr13 49576970 49577199 -70167699 + MIR SINE MIR 8 239 -23 189 0 0 0 chr13 49577299 49577320 -70167578 + (A)n Simple_repeat Simple_repeat 1 21 0 804 299 30 15 chr13 49577326 49577590 -70167308 + L3 LINE CR1 1293 1560 -17 31 26 0 0 chr13 49577590 49577628 -70167270 + AT_rich Low_complexity Low_complexity 1 38 0 253 226 48 0 chr13 49577884 49577946 -70166952 - L1ME4a LINE L1 -202 5919 5855 490 294 77 49 chr13 49578175 49579004 -70165894 + L1ME4a LINE L1 4955 5809 -752 423 247 173 44 chr13 49579225 49579441 -70165457 - L1ME4a LINE L1 -157 5964 5777 4058 157 14 4 chr13 49579441 49580156 -70164742 + L1MD1 LINE L1 5520 6241 -1 423 247 173 44 chr13 49580156 49580303 -70164595 - L1ME4a LINE L1 -344 5777 5554 578 347 50 0 chr13 49580355 49580597 -70164301 - MIR SINE MIR -8 254 1 272 256 103 26 chr13 49582812 49583007 -70161891 + L1ME4a LINE L1 5898 6107 -14 25 0 0 0 chr13 49583007 49583032 -70161866 + AT_rich Low_complexity Low_complexity 1 25 0 247 246 8 29 chr13 49583211 49583339 -70161559 - MER5B DNA MER1_type 0 178 1 210 290 167 56 chr13 49586456 49586780 -70158118 + L2 LINE L2 2390 2749 -565 350 282 63 28 chr13 49587410 49587552 -70157346 - MLT1J2 LTR MaLR -41 409 263 314 288 12 0 chr13 49587590 49587670 -70157228 - MLT1I LTR MaLR -261 148 68 395 273 142 23 chr13 49587777 49587953 -70156945 + MIR SINE MIR 66 262 0 27 29 0 0 chr13 49588002 49588036 -70156862 + AT_rich Low_complexity Low_complexity 1 34 0 10495 21 2 7 chr13 49588224 49589470 -70155428 - L1PA4 LINE L1 -1384 4762 3524 7556 25 0 1 chr13 49589470 49590879 -70154019 + L1PA4 LINE L1 4766 6155 0 512 293 68 20 chr13 49591063 49591312 -70153586 + MIR SINE MIR 2 262 0 30 27 0 0 chr13 49592207 49592244 -70152654 + AT_rich Low_complexity Low_complexity 1 37 0 2199 82 14 0 chr13 49592317 49592620 -70152278 - AluSq SINE Alu 0 307 1 189 0 0 0 chr13 49592677 49592698 -70152200 + (TG)n Simple_repeat Simple_repeat 1 21 0 307 299 104 0 chr13 49592823 49592970 -70151928 + MIR3 SINE MIR 2 159 -60 288 0 0 0 chr13 49593115 49593147 -70151751 + (CA)n Simple_repeat Simple_repeat 2 33 0 2373 98 35 19 chr13 49593418 49593786 -70151112 - L1PA11 LINE L1 -1 6173 5800 2939 208 6 20 chr13 49594602 49595238 -70149660 + L1MC3 LINE L1 7070 7696 -89 1224 226 78 0 chr13 49595238 49595495 -70149403 + MSTD LTR MaLR 1 277 -119 426 98 0 0 chr13 49595495 49595556 -70149342 + MSTD LTR MaLR 397 457 0 438 137 42 11 chr13 49595558 49595653 -70149245 + L1MC2 LINE L1 6247 6344 0 243 304 61 43 chr13 49595680 49595795 -70149103 - L3 LINE CR1 -76 1501 1385 1893 135 0 64 chr13 49596571 49596898 -70148000 - AluSx SINE Alu -6 306 1 256 264 9 123 chr13 49597394 49597500 -70147398 - MIR SINE MIR -1 261 168 25 0 0 0 chr13 49598885 49598910 -70145988 + AT_rich Low_complexity Low_complexity 1 25 0 336 286 66 54 chr13 49599235 49599476 -70145422 + HAL1b LINE L1 331 574 -774 800 269 138 38 chr13 49599536 49600215 -70144683 + L1MC5 LINE L1 4487 5233 -913 474 260 55 17 chr13 49600283 49600464 -70144434 + L1MC5 LINE L1 5301 5488 -2320 1860 220 41 62 chr13 49600597 49601228 -70143670 + L1MC5 LINE L1 6614 7231 -730 271 205 60 13 chr13 49601228 49601379 -70143519 + (TA)n Simple_repeat Simple_repeat 2 159 0 227 171 40 40 chr13 49601372 49601448 -70143450 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 * 25 31 0 0 chr13 49602310 49602342 -70142556 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr13 49602990 49603025 -70141873 + AT_rich Low_complexity Low_complexity 1 35 0 204 281 0 18 chr13 49603173 49603230 -70141668 + CT-rich Low_complexity Low_complexity 6 61 0 1496 225 26 17 chr13 49604594 49604654 -70140244 - L1ME1 LINE L1 -90 6076 6018 3377 101 36 0 chr13 49604654 49605158 -70139740 - L1MA2 LINE L1 -1 6303 5782 1496 225 26 17 chr13 49605158 49605536 -70139362 - L1ME1 LINE L1 -148 6018 5718 2880 192 7 68 chr13 49605548 49606257 -70138641 - L1MA10 LINE L1 -2 6332 5667 1358 273 63 10 chr13 49606256 49606860 -70138038 - L1MCc LINE L1 -4285 2837 2202 * 3884 157 41 7 chr13 49606880 49607606 -70137292 - L1MC3 LINE L1 -8 7777 7027 1824 256 47 38 chr13 49607615 49608349 -70136549 - L1MCc LINE L1 -4897 1526 1260 2131 117 0 27 chr13 49608349 49608649 -70136249 - AluSx SINE Alu -13 299 8 1824 256 47 38 chr13 49608649 49609054 -70135844 - L1MCc LINE L1 -5163 1260 860 186 356 14 0 chr13 49609148 49609221 -70135677 - L2 LINE L2 -5 3267 3194 375 313 129 11 chr13 49609609 49609807 -70135091 + MIR SINE MIR 44 262 0 273 197 0 0 chr13 49610521 49610587 -70134311 + (TTCA)n Simple_repeat Simple_repeat 4 69 0 418 324 45 47 chr13 49610655 49611202 -70133696 - L2 LINE L2 -100 3213 2624 823 345 92 37 chr13 49611222 49612085 -70132813 - L2 LINE L2 -1605 1709 800 260 237 99 69 chr13 49612086 49612217 -70132681 + LTR40a LTR ERVL 1 135 -384 2053 146 24 11 chr13 49612403 49612779 -70132119 - MSTB-int LTR MaLR -1270 381 1 2300 158 70 0 chr13 49612779 49613177 -70131721 - MSTB LTR MaLR 0 426 1 274 243 23 0 chr13 49613218 49613299 -70131599 + L1ME LINE L1 5462 5543 -578 261 299 6 45 chr13 49613365 49613542 -70131356 - L1ME LINE L1 -235 5886 5717 324 308 105 15 chr13 49614294 49614427 -70130471 - L1ME4a LINE L1 -198 5923 5779 41704 42 3 1 chr13 49614505 49620630 -70124268 - L1PA4 LINE L1 -3 6152 13 1607 186 20 14 chr13 49620713 49621009 -70123889 - AluJo SINE Alu -14 298 1 1451 255 107 27 chr13 49621808 49622368 -70122530 - L2 LINE L2 -749 2565 1961 1960 169 40 31 chr13 49622368 49622908 -70121990 + MLT2A2 LTR ERVL 3 554 0 577 209 68 14 chr13 49622911 49623059 -70121839 - L2 LINE L2 -1353 1961 1806 651 112 0 9 chr13 49623108 49623224 -70121674 + Charlie5 DNA MER1_type 2510 2624 0 1173 233 99 17 chr13 49623225 49623637 -70121261 - L2 LINE L2 -1517 1797 1352 192 125 0 0 chr13 49623847 49623879 -70121019 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 810 108 24 24 chr13 49625825 49625991 -70118907 + GA-rich Low_complexity Low_complexity 3 168 0 2618 127 19 0 chr13 49626735 49627160 -70117738 - L1MB2 LINE L1 -9 6162 5730 1208 223 42 71 chr13 49627304 49627784 -70117114 + LTR37B LTR ERV1 1 466 -2 186 208 0 0 chr13 49628413 49628461 -70116437 + (TG)n Simple_repeat Simple_repeat 1 48 0 408 295 43 68 chr13 49629618 49629852 -70115046 - MIR SINE MIR -12 250 23 4796 87 5 0 chr13 49630787 49631434 -70113464 - L1PA10 LINE L1 0 6168 5519 295 141 31 0 chr13 49633621 49633685 -70111213 + GA-rich Low_complexity Low_complexity 2 67 0 366 261 69 0 chr13 49635589 49635719 -70109179 - MIR SINE MIR -84 178 40 672 311 50 9 chr13 49636000 49636222 -70108676 - MIR SINE MIR -26 236 6 203 348 160 14 chr13 49636553 49636701 -70108197 - MIR SINE MIR -50 212 45 2424 84 0 0 chr13 49636703 49637014 -70107884 + AluY SINE Alu 1 311 0 203 245 20 0 chr13 49638298 49638347 -70106551 + G-rich Low_complexity Low_complexity 1 50 0 533 270 142 33 chr13 49639045 49639256 -70105642 + MIR SINE MIR 15 248 -14 956 207 18 6 chr13 49641217 49641442 -70103456 + L1ME1 LINE L1 5949 6332 -2 261 256 143 37 chr13 49642049 49642370 -70102528 + L1ME4a LINE L1 4541 4895 -1251 22 0 0 0 chr13 49642466 49642488 -70102410 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 49642848 49642873 -70102025 + AT_rich Low_complexity Low_complexity 1 25 0 647 254 127 51 chr13 49642968 49643519 -70101379 + L1ME4a LINE L1 5523 6115 -6 6397 226 28 14 chr13 49643744 49643958 -70100940 - L1MB7 LINE L1 -19 6807 6597 3047 206 72 9 chr13 49643958 49644699 -70100199 + LTR48 LTR ERV1 1 787 0 6397 226 28 14 chr13 49644699 49647092 -70097806 - L1MB7 LINE L1 -229 6597 4096 3222 195 61 26 chr13 49647096 49647695 -70097203 - L1MB7 LINE L1 -4536 2253 1613 369 0 0 0 chr13 49647695 49647736 -70097162 + (TG)n Simple_repeat Simple_repeat 2 42 0 3222 195 61 26 chr13 49647736 49648004 -70096894 - L1MB7 LINE L1 -5176 1613 1356 1308 323 41 28 chr13 49648168 49648782 -70096116 - L1MB7 LINE L1 -6159 630 9 273 270 45 27 chr13 49648925 49649036 -70095862 - L1M4c LINE L1 -4629 1755 1643 5764 221 60 38 chr13 49649067 49649310 -70095588 - L1M4c LINE L1 -4453 2372 2136 2179 131 3 0 chr13 49649310 49649615 -70095283 - AluSp SINE Alu -7 306 1 5764 221 60 38 chr13 49649615 49651576 -70093322 - L1M4c LINE L1 -4689 2136 2 224 328 31 0 chr13 49652043 49652107 -70092791 - L3b LINE CR1 -1 1582 1517 350 294 14 7 chr13 49652154 49652297 -70092601 + MER103 DNA DNA 20 163 -3 188 372 47 12 chr13 49652365 49652400 -70092498 - MIR SINE MIR -114 148 116 546 206 109 29 chr13 49652400 49652575 -70092323 + MER53 DNA DNA 1 189 0 188 372 47 12 chr13 49652575 49652625 -70092273 - MIR SINE MIR -146 116 60 2311 113 0 0 chr13 49652841 49653150 -70091748 + AluSg SINE Alu 1 309 -1 810 229 25 15 chr13 49653161 49653362 -70091536 - MIR SINE MIR 0 262 60 212 314 58 35 chr13 49653699 49653785 -70091113 + L2 LINE L2 3209 3296 -17 440 283 157 0 chr13 49654461 49654627 -70090271 - MIR SINE MIR 0 262 71 9819 25 0 0 chr13 49657276 49659232 -70085666 + L1PA4 LINE L1 4226 6181 0 1260 175 8 4 chr13 49659763 49660009 -70084889 + MLT1D LTR MaLR 1 247 -258 361 167 0 0 chr13 49660322 49660382 -70084516 + MER81 DNA DNA 54 113 -1 372 281 43 36 chr13 49661532 49661671 -70083227 + MIR3 SINE MIR 14 153 -55 217 341 77 40 chr13 49661935 49662208 -70082690 + L2 LINE L2 3023 3305 -8 194 282 128 0 chr13 49662802 49662880 -70082018 - MIR SINE MIR 0 262 175 192 276 110 76 chr13 49663344 49663489 -70081409 + L2 LINE L2 1764 1913 -1401 3709 130 58 1 chr13 49664786 49665837 -70079061 + Tigger2 DNA MER2_type 1 1142 -1576 8123 27 1 0 chr13 49665837 49666874 -70078024 - L1P LINE L1 -2344 3802 2765 7500 24 0 0 chr13 49666874 49667745 -70077153 + L1PA3 LINE L1 5284 6155 0 40 21 0 0 chr13 49667745 49667792 -70077106 + AT_rich Low_complexity Low_complexity 1 47 0 7875 120 38 25 chr13 49667818 49669155 -70075743 + Tigger2 DNA MER2_type 1134 2487 -231 415 118 0 24 chr13 49669165 49669250 -70075648 - Tigger2 DNA MER2_type -169 2549 2467 636 198 101 128 chr13 49669252 49669620 -70075278 + MLT1J LTR MaLR 154 511 0 185 80 0 0 chr13 49669688 49669713 -70075185 - L3b LINE CR1 -125 1458 1434 216 67 0 0 chr13 49670019 49670049 -70074849 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 243 345 21 99 chr13 49670073 49670215 -70074683 - L2 LINE L2 -15 3257 3127 339 311 134 0 chr13 49671596 49671715 -70073183 + MIR SINE MIR 9 143 -119 318 50 0 0 chr13 49671727 49671767 -70073131 + (TG)n Simple_repeat Simple_repeat 2 41 0 303 288 158 5 chr13 49671995 49672179 -70072719 - L1M4 LINE L1 -1113 5033 4822 363 157 0 0 chr13 49672580 49672650 -70072248 + (CA)n Simple_repeat Simple_repeat 1 70 0 180 176 0 0 chr13 49673118 49673152 -70071746 + (CCCCAG)n Simple_repeat Simple_repeat 1 34 0 520 269 146 56 chr13 49673450 49673882 -70071016 - L2 LINE L2 0 3313 2843 256 295 38 48 chr13 49674251 49674356 -70070542 - L2 LINE L2 -50 3222 3119 238 277 21 0 chr13 49674374 49674468 -70070430 - L1M4 LINE L1 -1712 4434 4339 840 187 7 0 chr13 49674468 49674618 -70070280 - MLT1B LTR MaLR 0 390 240 761 271 69 8 chr13 49674618 49674865 -70070033 - L2 LINE L2 -1360 1954 1693 4092 133 18 28 chr13 49674937 49675681 -70069217 - L1MA8 LINE L1 -4 6287 5552 2327 223 24 38 chr13 49675683 49676396 -70068502 - L1ME2 LINE L1 -34 6199 5497 * 2636 239 43 20 chr13 49676390 49677419 -70067479 - L1ME2 LINE L1 -2692 3523 2472 1462 295 83 30 chr13 49677404 49678530 -70066368 - L1ME2 LINE L1 -4632 1764 580 * 22 35 0 0 chr13 49678625 49678654 -70066244 + AT_rich Low_complexity Low_complexity 1 29 0 359 330 30 15 chr13 49678681 49678945 -70065953 - L1MEd LINE L1 -4971 1148 881 308 187 49 106 chr13 49678945 49679068 -70065830 - HAL1 LINE L1 -1490 1017 902 216 0 0 0 chr13 49679604 49679628 -70065270 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1070 194 35 112 chr13 49679905 49680281 -70064617 - MLT1A1 LTR MaLR 0 365 19 316 296 0 11 chr13 49680870 49680958 -70063940 - MIR SINE MIR -101 161 75 2281 82 0 30 chr13 49683024 49683328 -70061570 + AluY SINE Alu 1 295 -16 612 277 48 68 chr13 49683487 49683779 -70061119 + Charlie8 DNA MER1_type 1 286 -2131 1160 269 87 18 chr13 49683779 49684169 -70060729 + L2 LINE L2 2894 3310 -3 515 357 0 11 chr13 49685014 49685196 -70059702 + (TG)n Simple_repeat Simple_repeat 1 180 0 369 286 0 0 chr13 49685200 49685347 -70059551 + (TATATG)n Simple_repeat Simple_repeat 4 150 0 395 261 8 0 chr13 49685434 49685568 -70059330 + (TG)n Simple_repeat Simple_repeat 2 136 0 21 0 0 0 chr13 49685784 49685805 -70059093 + AT_rich Low_complexity Low_complexity 1 21 0 293 147 274 11 chr13 49685812 49685907 -70058991 - L2 LINE L2 -2 3311 3192 193 271 119 0 chr13 49687028 49687087 -70057811 - MIR SINE MIR -148 114 49 251 309 138 20 chr13 49687090 49687242 -70057656 - MIR3 SINE MIR -37 171 2 544 335 26 9 chr13 49687377 49687604 -70057294 - MIR SINE MIR -12 250 20 183 42 0 0 chr13 49688049 49688073 -70056825 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 2263 103 0 17 chr13 49688611 49688913 -70055985 - AluSx SINE Alu -15 297 1 326 297 122 68 chr13 49689817 49690113 -70054785 + L2 LINE L2 2990 3301 -12 4384 157 4 11 chr13 49691931 49692682 -70052216 - L1MB5 LINE L1 -8 6166 5421 252 313 268 0 chr13 49692918 49693030 -70051868 + MER5A DNA MER1_type 48 189 0 746 220 36 12 chr13 49693149 49693317 -70051581 - MER5B DNA MER1_type 0 178 7 1877 158 14 0 chr13 49693834 49694119 -70050779 + AluJo SINE Alu 2 290 -22 202 167 0 0 chr13 49694265 49694301 -70050597 - L2 LINE L2 -1 3312 3277 965 232 45 80 chr13 49694352 49694814 -70050084 + MER20B DNA MER1_type 3 448 -335 488 104 0 13 chr13 49694810 49694887 -70050011 + MLT1B LTR MaLR 315 390 0 * 965 238 70 0 chr13 49695176 49695390 -70049508 - MIR SINE MIR 0 262 34 1519 186 18 87 chr13 49695669 49696061 -70048837 - MLT1A1 LTR MaLR 0 365 1 522 276 129 50 chr13 49699580 49699943 -70044955 + MER115 DNA AcHobo 302 693 0 292 163 0 0 chr13 49701147 49701196 -70043702 - L2 LINE L2 0 3313 3265 1001 219 78 14 chr13 49701445 49701640 -70043258 - MIR SINE MIR -5 257 45 501 257 9 9 chr13 49701640 49701753 -70043145 + MER81 DNA DNA 2 114 0 1001 219 78 14 chr13 49701753 49701776 -70043122 - MIR SINE MIR -217 45 25 468 257 235 0 chr13 49702580 49702763 -70042135 + MIR SINE MIR 21 246 -16 2702 125 184 71 chr13 49703039 49704137 -70040761 - Tigger3b DNA MER2_type -1 1231 7 237 233 86 52 chr13 49704264 49704380 -70040518 + MER46C DNA MER2_type 1 120 -218 292 267 11 0 chr13 49704398 49704488 -70040410 + MER46C DNA MER2_type 248 338 0 589 288 46 14 chr13 49704489 49704708 -70040190 - L1MC/D LINE L1 -2028 5780 5555 347 249 70 19 chr13 49704777 49704990 -70039908 - L1MC/D LINE L1 -749 5397 5174 802 276 15 0 chr13 49706745 49706948 -70037950 + MIR SINE MIR 50 255 -7 195 42 0 0 chr13 49709128 49709152 -70035746 + (T)n Simple_repeat Simple_repeat 1 24 0 409 271 19 19 chr13 49709986 49710093 -70034805 + MIR SINE MIR 36 142 -120 224 380 42 0 chr13 49711291 49711433 -70033465 - MIR SINE MIR -5 257 110 546 211 166 9 chr13 49712883 49713106 -70031792 + L1ME4a LINE L1 5861 6118 -3 2211 114 0 19 chr13 49713302 49713619 -70031279 - AluSx SINE Alu -1 311 1 5148 164 47 48 chr13 49713795 49714701 -70030197 - Ricksha_a DNA DNA -2078 1173 268 1963 163 0 16 chr13 49714701 49715008 -70029890 - AluJo SINE Alu -10 302 1 5148 164 47 48 chr13 49715008 49715276 -70029622 - Ricksha_a DNA DNA -2983 268 1 212 237 176 38 chr13 49715797 49715953 -70028945 + MIR SINE MIR 22 202 -60 2158 121 3 0 chr13 49716245 49716542 -70028356 + AluSc SINE Alu 1 298 -11 2329 111 0 0 chr13 49717172 49717470 -70027428 - AluSg SINE Alu -12 298 1 3862 133 24 13 chr13 49717850 49718481 -70026417 + L1PA16 LINE L1 5520 6157 -9 564 130 0 0 chr13 49718482 49718597 -70026301 + (TA)n Simple_repeat Simple_repeat 1 115 0 22 56 0 0 chr13 49718695 49718731 -70026167 + AT_rich Low_complexity Low_complexity 1 36 0 255 276 82 66 chr13 49718795 49718991 -70025907 - L1ME LINE L1 -248 5873 5675 486 182 161 14 chr13 49721857 49722000 -70022898 - MIR SINE MIR -36 226 63 496 299 55 20 chr13 49722363 49722564 -70022334 + MIR SINE MIR 31 238 -24 217 270 63 0 chr13 49723217 49723280 -70021618 - L2 LINE L2 -8 3305 3239 314 332 71 65 chr13 49723624 49723965 -70020933 + L2 LINE L2 2925 3293 -20 1032 174 64 4 chr13 49724416 49724680 -70020218 + MER33 DNA MER1_type 45 324 0 494 315 71 34 chr13 49724816 49725054 -70019844 - MIR SINE MIR 0 262 16 188 315 31 63 chr13 49725337 49725464 -70019434 + MIR SINE MIR 137 259 -3 535 217 20 35 chr13 49725746 49725944 -70018954 - L1MC5 LINE L1 -164 7797 7603 1574 178 10 29 chr13 49725963 49726272 -70018626 + AluJo SINE Alu 1 303 -9 1897 172 0 3 chr13 49726402 49726693 -70018205 + AluJo SINE Alu 1 290 -22 194 355 26 13 chr13 49727383 49727535 -70017363 - L2 LINE L2 -1315 1999 1846 594 232 55 24 chr13 49727609 49727773 -70017125 + MIR SINE MIR 43 211 -51 546 237 180 34 chr13 49729484 49729834 -70015064 + HAL1b LINE L1 208 608 -740 325 306 47 43 chr13 49730033 49730286 -70014612 + HAL1b LINE L1 709 2359 -148 1606 204 40 3 chr13 49730666 49731018 -70013880 + MLT1A1 LTR MaLR 1 365 0 309 300 142 34 chr13 49731036 49731289 -70013609 + L1 LINE L1 2367 2678 -3468 410 0 20 0 chr13 49731289 49731339 -70013559 + (CA)n Simple_repeat Simple_repeat 2 52 0 309 300 142 34 chr13 49731339 49731472 -70013426 + L1 LINE L1 2678 2795 -3351 520 264 6 13 chr13 49733488 49733647 -70011251 - MIR SINE MIR 0 262 105 640 217 0 13 chr13 49733649 49733801 -70011097 + L1MC5 LINE L1 6696 6845 -1116 510 231 9 0 chr13 49733803 49733911 -70010987 - MER81 DNA DNA 0 114 6 2133 183 96 92 chr13 49733913 49734170 -70010728 + L1MC5 LINE L1 6852 7106 -855 1510 46 0 0 chr13 49734170 49734369 -70010529 - AluY SINE Alu 0 304 106 2133 183 96 92 chr13 49734369 49735158 -70009740 + L1MC5 LINE L1 7106 7883 -78 238 326 11 21 chr13 49735202 49735297 -70009601 - MIR SINE MIR -148 114 21 4597 150 40 3 chr13 49735508 49736824 -70008074 - L1PB3 LINE L1 -146 6008 4641 2842 169 249 1 chr13 49736832 49737544 -70007354 + L1PB3 LINE L1 3733 4620 -1526 518 228 16 16 chr13 49737554 49737681 -70007217 - MLT1F1 LTR MaLR -53 514 388 236 262 8 82 chr13 49737671 49737793 -70007105 - MLT1E LTR MaLR -327 240 128 * 213 39 0 0 chr13 49737797 49737823 -70007075 + (T)n Simple_repeat Simple_repeat 1 26 0 330 234 101 8 chr13 49737828 49737939 -70006959 - MLT1E LTR MaLR -450 92 1 3551 39 83 0 chr13 49738683 49738997 -70005901 + L1MC1 LINE L1 5508 5776 -557 3551 144 54 2 chr13 49738997 49739623 -70005275 + L1MC1 LINE L1 5670 6328 -5 3551 39 83 0 chr13 49739623 49739705 -70005193 + L1MC1 LINE L1 5776 6328 -5 180 97 0 0 chr13 49739824 49739855 -70005043 + (TA)n Simple_repeat Simple_repeat 1 31 0 5434 56 1 0 chr13 49739855 49740532 -70004366 - L1PA5 LINE L1 -15 6139 5462 1614 172 20 16 chr13 49740593 49740896 -70004002 - AluJo SINE Alu -8 304 1 1003 142 35 104 chr13 49742276 49742564 -70002334 + ORSL DNA AcHobo 6 273 -2 2208 131 0 0 chr13 49743261 49743567 -70001331 + AluSx SINE Alu 1 306 -6 324 0 0 0 chr13 49744791 49744827 -70000071 + (TG)n Simple_repeat Simple_repeat 2 37 0 706 181 9 0 chr13 49744831 49744947 -69999951 - FLAM_A SINE Alu -16 117 1 3698 124 0 6 chr13 49745587 49746117 -69998781 - MER1A DNA MER1_type 0 527 1 233 333 40 0 chr13 49746735 49746810 -69998088 - MIR3 SINE MIR -27 181 104 570 191 67 49 chr13 49747301 49747514 -69997384 + LTR45B LTR ERV1 296 489 0 277 361 108 0 chr13 49748156 49748286 -69996612 - MIR3 SINE MIR -63 145 2 429 206 130 101 chr13 49748501 49749067 -69995831 - L1MC5 LINE L1 -336 7625 6855 2525 54 0 3 chr13 49749067 49749365 -69995533 - AluY SINE Alu -14 297 1 429 206 130 101 chr13 49749365 49749585 -69995313 - L1MC5 LINE L1 -1106 6855 6643 371 162 29 0 chr13 49749910 49749978 -69994920 - AluJ/FRAM SINE Alu -2 300 231 21 0 0 0 chr13 49750137 49750158 -69994740 + AT_rich Low_complexity Low_complexity 1 21 0 284 310 103 35 chr13 49751630 49751804 -69993094 - MIR3 SINE MIR -5 203 18 4075 134 18 5 chr13 49752323 49752994 -69991904 - L1PA16 LINE L1 -2 6164 5485 459 0 0 0 chr13 49753066 49753117 -69991781 + (TG)n Simple_repeat Simple_repeat 1 51 0 197 341 34 57 chr13 49753694 49753782 -69991116 + L2 LINE L2 3137 3222 -50 935 280 69 24 chr13 49753793 49754168 -69990730 + L2 LINE L2 1452 1843 -1471 1656 225 34 5 chr13 49754224 49754610 -69990288 + MLT1C LTR MaLR 71 467 0 1630 275 96 21 chr13 49754625 49755055 -69989843 + L2 LINE L2 1889 2378 -936 2421 146 59 0 chr13 49755055 49755459 -69989439 - MSTC LTR MaLR 0 428 1 1630 275 96 21 chr13 49755459 49755635 -69989263 + L2 LINE L2 2378 2540 -774 443 262 133 38 chr13 49755671 49755881 -69989017 - L2 LINE L2 -4 3309 3080 876 297 122 34 chr13 49755895 49756609 -69988289 + L2 LINE L2 2530 3313 0 341 324 29 24 chr13 49757349 49757519 -69987379 - L1MC4a LINE L1 -1894 5914 5744 360 310 26 65 chr13 49757794 49757949 -69986949 + MIR3 SINE MIR 14 162 -46 1790 80 0 0 chr13 49758454 49758692 -69986206 - L1PA8 LINE L1 -4 6168 5931 222 365 26 0 chr13 49758867 49758982 -69985916 + MER5B DNA MER1_type 61 178 0 204 273 0 0 chr13 49758995 49759039 -69985859 - L2 LINE L2 -535 2779 2736 2888 173 12 4 chr13 49759046 49759607 -69985291 - L1MB3 LINE L1 -2 6181 5616 2025 144 39 33 chr13 49759825 49760187 -69984711 + THE1B LTR MaLR 1 364 0 1386 115 23 0 chr13 49760192 49760409 -69984489 - L1MA4A LINE L1 -15 6288 6067 336 241 0 71 chr13 49760450 49760562 -69984336 - L2 LINE L2 -617 2697 2594 3263 130 4 54 chr13 49760583 49761246 -69983652 - MER41B LTR ERV1 0 554 6 265 222 16 16 chr13 49761263 49761326 -69983572 - L2 LINE L2 -751 2563 2501 297 311 121 37 chr13 49765844 49766078 -69978820 + MIR SINE MIR 5 257 -5 215 191 172 89 chr13 49766657 49766799 -69978099 + MIR SINE MIR 21 171 -76 673 216 0 0 chr13 49769564 49769698 -69975200 + L1PB4 LINE L1 6023 6156 0 257 341 38 8 chr13 49769973 49770105 -69974793 + MIR3 SINE MIR 54 189 -19 394 231 242 10 chr13 49770324 49770354 -69974544 - L1MC4a LINE L1 -320 5801 5779 1349 144 35 5 chr13 49770354 49770556 -69974342 - MER6B DNA MER2_type -2 208 1 394 231 242 10 chr13 49770556 49770718 -69974180 - L1MC4a LINE L1 -342 5779 5600 3111 201 48 36 chr13 49770728 49770873 -69974025 - L1ME1 LINE L1 -5 6161 6019 1692 188 40 77 chr13 49770873 49771325 -69973573 - MER63B DNA MER1_type -1 435 1 2830 0 3 3 chr13 49771333 49771640 -69973258 - AluYa5 SINE Alu -4 307 1 3111 201 48 36 chr13 49771640 49772207 -69972691 - L1ME1 LINE L1 -153 6013 5431 575 271 92 70 chr13 49772263 49772894 -69972004 - L1MDa LINE L1 -4615 1925 1281 73 57 0 0 chr13 49773015 49773137 -69971761 + AT_rich Low_complexity Low_complexity 1 122 0 2037 150 3 3 chr13 49773386 49773680 -69971218 - AluSx SINE Alu -17 295 2 256 245 0 0 chr13 49774206 49774259 -69970639 - MER5B DNA MER1_type -122 56 4 343 273 45 0 chr13 49775003 49775113 -69969785 - MIR SINE MIR 0 262 148 356 322 8 25 chr13 49775237 49775358 -69969540 + MIR SINE MIR 20 138 -124 272 297 95 54 chr13 49776272 49776441 -69968457 - MER5A DNA MER1_type -3 186 1 425 287 19 0 chr13 49776880 49776988 -69967910 + ERVL LTR ERVL 4734 4843 -921 2135 142 44 0 chr13 49777000 49777338 -69967560 + THE1B LTR MaLR 2 354 -10 439 319 26 53 chr13 49777419 49777527 -69967371 + ERVL LTR ERVL 5015 5124 -640 2732 134 3 0 chr13 49777527 49777901 -69966997 + THE1C LTR MaLR 1 375 0 439 319 26 53 chr13 49777901 49778171 -69966727 + ERVL LTR ERVL 5124 5383 -381 863 276 68 52 chr13 49778312 49778739 -69966159 + LTR16A LTR ERVL 17 450 0 337 332 106 42 chr13 49779934 49780151 -69964747 - MIR SINE MIR -11 251 21 330 167 0 0 chr13 49780992 49781052 -69963846 + (TA)n Simple_repeat Simple_repeat 2 61 0 2129 154 21 68 chr13 49781095 49781518 -69963380 + MSTB1 LTR MaLR 8 410 -22 3573 113 16 19 chr13 49781518 49782030 -69962868 - MER1A DNA MER1_type 0 529 20 349 190 76 38 chr13 49781991 49782070 -69962828 + Charlie3 DNA MER1_type 6 87 -2623 * 191 253 213 67 chr13 49782310 49782460 -69962438 - MIR3 SINE MIR -7 201 30 1638 267 68 45 chr13 49784403 49785339 -69959559 + L2 LINE L2 2353 3311 -2 1456 169 60 18 chr13 49785377 49785661 -69959237 - AluJo SINE Alu -9 303 8 391 273 99 84 chr13 49785672 49786005 -69958893 - MLT1J LTR MaLR -50 461 124 1920 121 21 38 chr13 49786760 49787100 -69957798 - L1MA4A LINE L1 0 6303 5970 604 308 174 20 chr13 49787695 49788052 -69956846 + L3 LINE CR1 1154 1565 -12 201 227 227 45 chr13 49788359 49788469 -69956429 - MER5A DNA MER1_type -48 141 12 184 277 44 109 chr13 49788650 49788787 -69956111 + L2 LINE L2 3164 3291 -22 358 300 18 9 chr13 49789999 49790109 -69954789 - MIR SINE MIR -129 133 23 235 304 72 56 chr13 49791483 49791608 -69953290 - MER5A DNA MER1_type -2 187 61 * 476 260 23 23 chr13 49791513 49791658 -69953240 + MER5A DNA MER1_type 34 189 0 267 300 106 38 chr13 49791838 49791923 -69952975 + MER5B DNA MER1_type 2 80 -98 348 24 0 0 chr13 49791923 49791964 -69952934 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 378 0 0 0 chr13 49791963 49792005 -69952893 + (CA)n Simple_repeat Simple_repeat 1 42 0 267 300 106 38 chr13 49791964 49792079 -69952819 + MER5B DNA MER1_type 80 172 -6 394 225 167 25 chr13 49792704 49792877 -69952021 + L1MC4 LINE L1 7860 7995 0 269 268 28 28 chr13 49793647 49793780 -69951118 - MLT1J1 LTR MaLR -4 442 358 * 489 305 77 31 chr13 49793779 49794038 -69950860 - MLT1J LTR MaLR -176 335 65 186 389 22 17 chr13 49794894 49795041 -69949857 + MIR3 SINE MIR 12 156 -79 189 107 0 0 chr13 49795464 49795492 -69949406 + (TAAAAA)n Simple_repeat Simple_repeat 1 28 0 862 248 47 23 chr13 49796612 49796911 -69947987 - L1MC5 LINE L1 -48 7913 7608 2961 132 79 2 chr13 49798381 49798851 -69946047 - L1PA16 LINE L1 -4 6162 5657 716 151 277 18 chr13 49799983 49800149 -69944749 - MER3 DNA MER1_type 0 209 1 211 299 11 46 chr13 49800181 49800268 -69944630 + MIR3 SINE MIR 110 193 -15 293 403 45 0 chr13 49800363 49800497 -69944401 + MIR3 SINE MIR 34 173 -35 294 282 43 26 chr13 49801079 49801196 -69943702 - L2 LINE L2 -4 3309 3191 356 182 16 107 chr13 49801283 49801404 -69943494 + MER103 DNA DNA 8 117 -49 399 344 52 10 chr13 49801825 49802017 -69942881 + MIR SINE MIR 28 227 -35 1398 157 76 30 chr13 49802303 49802565 -69942333 - AluJo SINE Alu -4 308 35 234 370 24 8 chr13 49803317 49803444 -69941454 + MIR SINE MIR 46 174 -88 1368 258 86 23 chr13 49803453 49804056 -69940842 + L2 LINE L2 2682 3313 0 454 241 12 82 chr13 49804259 49804429 -69940469 + L1MC4 LINE L1 7098 7255 -787 1364 158 116 44 chr13 49805601 49806089 -69938809 + MER34B LTR ERV1 2 565 0 240 245 0 0 chr13 49806736 49806789 -69938109 + MER89 LTR ERV1 11 63 -496 3209 126 59 29 chr13 49806818 49807375 -69937523 - MER4B LTR ERV1 -36 574 1 1342 227 78 21 chr13 49807378 49807713 -69937185 + MER89 LTR ERV1 197 550 -9 288 222 74 37 chr13 49807746 49807854 -69937044 - MARNA DNA Mariner -36 550 439 889 198 111 133 chr13 49807941 49808453 -69936445 - LTR28 LTR ERV1 -452 1303 1 240 314 93 0 chr13 49810048 49810134 -69934764 + L2 LINE L2 3119 3212 -60 379 205 0 18 chr13 49810230 49810342 -69934556 + (TA)n Simple_repeat Simple_repeat 2 111 0 629 247 91 38 chr13 49810598 49810861 -69934037 - L1MC4 LINE L1 -188 7854 7578 641 134 21 10 chr13 49810875 49810972 -69933926 - FLAM_C SINE Alu -18 125 28 355 236 19 9 chr13 49810994 49811100 -69933798 - L1MC4 LINE L1 -473 7569 7463 428 320 121 10 chr13 49811379 49811585 -69933313 - MIR SINE MIR 0 262 34 30 0 0 0 chr13 49812449 49812479 -69932419 + AT_rich Low_complexity Low_complexity 1 30 0 460 315 172 31 chr13 49812912 49813359 -69931539 - MLT1H LTR MaLR 0 549 40 1750 152 30 20 chr13 49813551 49813854 -69931044 + AluJb SINE Alu 1 306 -6 3098 222 85 25 chr13 49813863 49815392 -69929506 + L1ME1 LINE L1 4550 6334 0 238 266 210 16 chr13 49816318 49816442 -69928456 - MIR3 SINE MIR -51 157 10 237 33 0 0 chr13 49816498 49816528 -69928370 + (CA)n Simple_repeat Simple_repeat 2 31 0 2351 93 3 3 chr13 49816615 49816926 -69927972 - AluSq SINE Alu -2 311 1 550 258 0 0 chr13 49817037 49817157 -69927741 + MIR SINE MIR 112 231 -31 511 27 27 14 chr13 49817623 49817696 -69927202 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1897 164 0 25 chr13 49817698 49818015 -69926883 - AluJo SINE Alu -1 311 3 2022 117 78 0 chr13 49818559 49818842 -69926056 + AluSx SINE Alu 1 305 -7 930 351 44 22 chr13 49819108 49819657 -69925241 - HERV16 LTR ERVL -735 5029 4469 327 284 37 28 chr13 49819819 49819928 -69924970 - HERV16 LTR ERVL -4886 110 1 1333 278 24 49 chr13 49819928 49820395 -69924503 - LTR16C LTR ERVL 0 491 37 655 223 44 58 chr13 49820446 49820652 -69924246 - MIR SINE MIR -19 243 41 393 143 14 0 chr13 49821247 49821317 -69923581 - Charlie8 DNA MER1_type -2142 275 205 531 161 9 89 chr13 49821320 49821432 -69923466 - Tigger7 DNA MER2_type 0 2487 2385 * 1364 195 73 0 chr13 49821427 49821673 -69923225 - Tigger7 DNA MER2_type -2220 267 4 330 286 64 29 chr13 49821676 49821816 -69923082 - Charlie8 DNA MER1_type -2227 190 46 548 324 79 41 chr13 49821827 49822142 -69922756 + L3 LINE CR1 1247 1573 -4 318 285 58 36 chr13 49823141 49823278 -69921620 - MIR SINE MIR -6 256 117 264 324 0 14 chr13 49824751 49824825 -69920073 - L2 LINE L2 0 3272 3200 2546 214 58 25 chr13 49826267 49826873 -69918025 - MLT1E2 LTR MaLR 0 626 1 695 268 18 14 chr13 49827573 49827793 -69917105 - L1ME LINE L1 -369 5752 5532 237 108 0 0 chr13 49828005 49828042 -69916856 + (T)n Simple_repeat Simple_repeat 1 37 0 200 204 23 0 chr13 49828796 49828840 -69916058 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 1149 280 69 83 chr13 49829402 49829969 -69914929 - MER77 LTR ERV1 -6 599 41 1827 134 3 77 chr13 49830058 49830431 -69914467 - MER4A LTR ERV1 0 664 261 755 71 0 10 chr13 49830431 49830530 -69914368 - MER4A LTR ERV1 -566 98 1 474 292 16 25 chr13 49830841 49831084 -69913814 + L1MDa LINE L1 1857 2108 -4443 2643 157 5 0 chr13 49831181 49831582 -69913316 - MER57A LTR ERV1 0 403 1 210 37 0 0 chr13 49832490 49832517 -69912381 + (TG)n Simple_repeat Simple_repeat 2 28 0 208 213 347 0 chr13 49833249 49833324 -69911574 - MIR SINE MIR -31 231 131 337 289 173 5 chr13 49833689 49833774 -69911124 + L1MC4 LINE L1 7584 7653 -389 234 0 0 0 chr13 49833774 49833800 -69911098 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 337 289 173 5 chr13 49833800 49833922 -69910976 + L1MC4 LINE L1 7653 7826 -216 258 246 97 9 chr13 49833933 49834047 -69910851 + L1MC4 LINE L1 7918 8041 -1 305 191 0 71 chr13 49834083 49834209 -69910689 + T-rich Low_complexity Low_complexity 5 121 0 24 0 0 0 chr13 49834978 49835002 -69909896 + AT_rich Low_complexity Low_complexity 1 24 0 2243 144 5 25 chr13 49835056 49835424 -69909474 + MLT1B LTR MaLR 30 390 0 978 262 87 23 chr13 49887270 49887657 -69857241 - L2 LINE L2 -227 3086 2682 234 370 24 8 chr13 49887666 49887793 -69857105 - MIR SINE MIR -88 174 46 1398 157 76 30 chr13 49888546 49888808 -69856090 + AluJo SINE Alu 35 308 -4 363 332 52 16 chr13 49889094 49889287 -69855611 - MIR SINE MIR -35 227 28 356 182 16 107 chr13 49889708 49889829 -69855069 - MER103 DNA DNA -49 117 8 294 282 43 26 chr13 49889916 49890033 -69854865 + L2 LINE L2 3191 3309 -4 293 403 45 0 chr13 49890615 49890749 -69854149 - MIR3 SINE MIR -35 173 34 211 299 11 46 chr13 49890844 49890931 -69853967 - MIR3 SINE MIR -15 193 110 716 151 277 18 chr13 49890963 49891129 -69853769 + MER3 DNA MER1_type 1 209 0 2961 132 79 2 chr13 49892261 49892731 -69852167 + L1PA16 LINE L1 5657 6162 -4 826 222 58 12 chr13 49894200 49894443 -69850455 + L1MC5 LINE L1 7608 7861 -100 189 107 0 0 chr13 49895623 49895651 -69849247 + (TTTTTA)n Simple_repeat Simple_repeat 1 28 0 489 319 56 27 chr13 49897076 49897467 -69847431 + MLT1J LTR MaLR 65 507 -4 394 225 167 25 chr13 49898242 49898415 -69846483 - L1MD3 LINE L1 0 8042 7860 272 283 119 44 chr13 49899041 49899114 -69845784 - MER5B DNA MER1_type -6 172 106 450 0 0 0 chr13 49899114 49899164 -69845734 + (TG)n Simple_repeat Simple_repeat 1 50 0 312 27 0 0 chr13 49899163 49899200 -69845698 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 272 283 119 44 chr13 49899164 49899285 -69845613 - MER5B DNA MER1_type -72 106 2 476 260 23 23 chr13 49899465 49899610 -69845288 - MER5A DNA MER1_type 0 189 34 221 312 72 56 chr13 49899515 49899640 -69845258 + MER5A DNA MER1_type 61 187 -2 * 358 300 18 9 chr13 49901014 49901124 -69843774 + MIR SINE MIR 23 133 -129 184 277 44 109 chr13 49902336 49902473 -69842425 - L2 LINE L2 -22 3291 3164 201 227 227 45 chr13 49902654 49902764 -69842134 + MER5A DNA MER1_type 12 141 -48 382 327 115 0 chr13 49903071 49903236 -69841662 - L3 LINE CR1 -12 1565 1382 300 242 61 0 chr13 49903500 49903566 -69841332 + L2 LINE L2 3244 3313 0 454 241 12 82 chr13 49903770 49903940 -69840958 + L1MC4 LINE L1 7098 7255 -787 1359 158 116 42 chr13 49905110 49905597 -69839301 + MER34B LTR ERV1 2 565 0 235 245 0 0 chr13 49906243 49906296 -69838602 + MER89 LTR ERV1 11 63 -496 3232 124 59 29 chr13 49906325 49906882 -69838016 - MER4B LTR ERV1 -36 574 1 1342 227 78 21 chr13 49906885 49907220 -69837678 + MER89 LTR ERV1 197 550 -9 288 222 74 37 chr13 49907253 49907361 -69837537 - MARNA DNA Mariner -36 550 439 889 200 111 133 chr13 49907448 49907960 -69836938 - LTR28 LTR ERV1 -452 1303 1 245 310 81 0 chr13 49909555 49909642 -69835256 + L2 LINE L2 3119 3212 -60 253 215 32 43 chr13 49909714 49909807 -69835091 + L1MC4 LINE L1 6612 6703 -1339 240 250 0 0 chr13 49909808 49909856 -69835042 + (TA)n Simple_repeat Simple_repeat 2 49 0 629 247 91 38 chr13 49910112 49910375 -69834523 - L1MC4 LINE L1 -188 7854 7578 641 134 21 10 chr13 49910389 49910486 -69834412 - FLAM_C SINE Alu -18 125 28 355 236 19 9 chr13 49910508 49910614 -69834284 - L1MC4 LINE L1 -473 7569 7463 428 320 121 10 chr13 49910893 49911099 -69833799 - MIR SINE MIR 0 262 34 30 0 0 0 chr13 49911963 49911993 -69832905 + AT_rich Low_complexity Low_complexity 1 30 0 445 318 172 31 chr13 49912426 49912873 -69832025 - MLT1H LTR MaLR 0 549 40 1549 169 34 0 chr13 49913065 49913331 -69831567 + AluJb SINE Alu 1 275 -37 332 359 107 10 chr13 49913739 49913965 -69830933 + L2 LINE L2 2037 2300 -1014 2687 16 3 3 chr13 49913965 49914269 -69830629 + AluY SINE Alu 1 304 -7 332 359 107 10 chr13 49914269 49914340 -69830558 + L2 LINE L2 2300 2363 -951 326 190 63 0 chr13 49914738 49914817 -69830081 - L1M4 LINE L1 -924 5222 5139 477 322 12 31 chr13 49914821 49915079 -69829819 - L1MEc LINE L1 -4578 1683 1431 * 36946 70 12 6 chr13 49915076 49921189 -69823709 - L1PA6 LINE L1 0 6154 11 1135 289 69 50 chr13 49921202 49922102 -69822796 - L1MEc LINE L1 -4819 1442 526 349 283 0 72 chr13 49922215 49922381 -69822517 - L1MEc LINE L1 -5539 531 378 863 276 68 52 chr13 49923406 49923833 -69821065 - LTR16A LTR ERVL 0 450 17 446 319 26 53 chr13 49923974 49924244 -69820654 - ERVL LTR ERVL -381 5383 5124 2732 134 3 0 chr13 49924244 49924618 -69820280 - THE1C LTR MaLR 0 375 1 446 319 26 53 chr13 49924618 49924726 -69820172 - ERVL LTR ERVL -640 5124 5015 2122 145 44 0 chr13 49924807 49925145 -69819753 - THE1B LTR MaLR -10 354 2 425 287 19 0 chr13 49925157 49925265 -69819633 - ERVL LTR ERVL -921 4843 4734 272 297 95 54 chr13 49925704 49925873 -69819025 + MER5A DNA MER1_type 1 186 -3 180 0 0 0 chr13 49926682 49926702 -69818196 + (TG)n Simple_repeat Simple_repeat 1 20 0 356 322 8 25 chr13 49926789 49926910 -69817988 - MIR SINE MIR -124 138 20 343 273 45 0 chr13 49927034 49927144 -69817754 + MIR SINE MIR 148 262 0 256 245 0 0 chr13 49927887 49927940 -69816958 + MER5B DNA MER1_type 4 56 -122 2037 150 3 3 chr13 49928466 49928760 -69816138 + AluSx SINE Alu 2 295 -17 34 55 0 0 chr13 49929009 49929064 -69815834 + AT_rich Low_complexity Low_complexity 1 55 0 419 250 139 82 chr13 49929147 49929473 -69815425 + L1ME1 LINE L1 953 1258 -4957 3031 217 89 28 chr13 49929604 49931069 -69813829 + L1ME1 LINE L1 4687 6403 0 238 266 210 16 chr13 49932001 49932125 -69812773 - MIR3 SINE MIR -51 157 10 237 33 0 0 chr13 49932181 49932211 -69812687 + (CA)n Simple_repeat Simple_repeat 2 31 0 2351 93 3 3 chr13 49932298 49932609 -69812289 - AluSq SINE Alu -2 311 1 550 258 0 0 chr13 49932720 49932840 -69812058 + MIR SINE MIR 112 231 -31 511 27 27 14 chr13 49933306 49933379 -69811519 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1886 165 0 25 chr13 49933381 49933697 -69811201 - AluJo SINE Alu -1 311 4 2022 117 78 0 chr13 49934242 49934525 -69810373 + AluSx SINE Alu 1 305 -7 949 352 44 20 chr13 49934791 49935339 -69809559 - HERV16 LTR ERVL -735 5029 4469 325 273 36 36 chr13 49935502 49935612 -69809286 - HERV16 LTR ERVL -4886 110 1 1224 287 24 51 chr13 49935614 49936081 -69808817 - LTR16C LTR ERVL -1 490 37 655 223 44 58 chr13 49936132 49936338 -69808560 - MIR SINE MIR -19 243 41 393 143 14 0 chr13 49936933 49937003 -69807895 - Charlie8 DNA MER1_type -2153 264 194 531 161 9 89 chr13 49937006 49937118 -69807780 - Tigger7 DNA MER2_type 0 2487 2385 * 1364 195 73 0 chr13 49937113 49937359 -69807539 - Tigger7 DNA MER2_type -466 267 4 526 326 76 41 chr13 49937513 49937829 -69807069 + L3 LINE CR1 1247 1573 -4 228 35 0 0 chr13 49939211 49939240 -69805658 + (CA)n Simple_repeat Simple_repeat 1 29 0 216 326 62 62 chr13 49940361 49940490 -69804408 + L2 LINE L2 3142 3270 -2 702 309 88 29 chr13 49941426 49941801 -69803097 + MLT1I LTR MaLR 11 407 -2 5229 73 10 7 chr13 49942148 49942876 -69802022 - L1P LINE L1 -888 5258 4529 278 269 88 83 chr13 49943932 49944125 -69800773 + MLT1J LTR MaLR 268 461 -50 1456 169 60 18 chr13 49944136 49944420 -69800478 + AluJo SINE Alu 8 303 -9 1641 263 67 46 chr13 49944458 49945382 -69799516 - L2 LINE L2 -2 3311 2368 191 253 213 67 chr13 49947335 49947485 -69797413 + MIR3 SINE MIR 30 201 -7 349 190 76 38 chr13 49947725 49947804 -69797094 - Charlie3 DNA MER1_type -2623 87 6 * 1892 122 11 11 chr13 49947765 49948043 -69796855 + MER1A DNA MER1_type 20 297 -232 376 145 16 16 chr13 49948328 49948390 -69796508 - AluS SINE Alu -233 70 9 198 169 28 42 chr13 49948617 49948688 -69796210 + GA-rich Low_complexity Low_complexity 2 71 0 227 294 9 28 chr13 49948772 49948881 -69796017 + GA-rich Low_complexity Low_complexity 1 107 0 273 289 26 0 chr13 49948933 49949009 -69795889 - L2 LINE L2 -9 3263 3186 252 173 0 49 chr13 49949680 49949761 -69795137 + CT-rich Low_complexity Low_complexity 2 78 0 2005 127 0 14 chr13 49950010 49950320 -69794578 + AluSx SINE Alu 9 312 0 1770 112 22 30 chr13 49951071 49951338 -69793560 + MER1A DNA MER1_type 265 529 0 * 2129 154 21 68 chr13 49951338 49951761 -69793137 - MSTB1 LTR MaLR -22 410 8 384 152 0 0 chr13 49951804 49951870 -69793028 + (TA)n Simple_repeat Simple_repeat 2 67 0 337 332 106 42 chr13 49952710 49952927 -69791971 + MIR SINE MIR 21 251 -11 1920 121 21 38 chr13 49954372 49954712 -69790186 - L1MA4A LINE L1 0 6303 5970 270 0 0 0 chr13 49956271 49956301 -69788597 + (CA)n Simple_repeat Simple_repeat 2 31 0 1685 209 19 29 chr13 49956301 49956678 -69788220 - MLT1A2 LTR MaLR -1 373 1 28 0 0 0 chr13 49956679 49956707 -69788191 + AT_rich Low_complexity Low_complexity 1 28 0 315 254 41 53 chr13 49956720 49956889 -69788009 + L1ME4a LINE L1 5935 6101 -20 1358 86 6 6 chr13 49957567 49957742 -69787156 + AluSq SINE Alu 1 175 -138 180 268 0 0 chr13 49958678 49958749 -69786149 + (TG)n Simple_repeat Simple_repeat 1 71 0 264 324 0 14 chr13 49959899 49959973 -69784925 - L2 LINE L2 0 3272 3200 2546 214 58 25 chr13 49961415 49962021 -69782877 - MLT1E2 LTR MaLR 0 626 1 374 288 16 53 chr13 49963135 49963321 -69781577 + MIR SINE MIR 27 206 -56 526 232 168 7 chr13 49964588 49964743 -69780155 + MER5A DNA MER1_type 9 188 -1 22 0 0 0 chr13 49966047 49966069 -69778829 + AT_rich Low_complexity Low_complexity 1 22 0 311 235 92 31 chr13 49966782 49966880 -69778018 - MLT1H LTR MaLR -353 196 93 222 266 64 55 chr13 49967221 49967330 -69777568 - L3b LINE CR1 -202 1381 1272 2043 163 41 27 chr13 49967529 49968073 -69776825 + MLT2A2 LTR ERVL 1 554 0 213 152 0 0 chr13 49968580 49968613 -69776285 - L2 LINE L2 -1520 1794 1762 572 288 11 5 chr13 49968676 49968860 -69776038 + MLT1H LTR MaLR 12 196 -353 1146 180 25 0 chr13 49969381 49969581 -69775317 - L1MD2 LINE L1 -7 6352 6148 331 281 83 31 chr13 49969590 49969782 -69775116 - L1ME LINE L1 -304 5817 5616 270 0 0 0 chr13 49970024 49970054 -69774844 + (CA)n Simple_repeat Simple_repeat 2 31 0 1725 209 16 29 chr13 49970054 49970432 -69774466 - MLT1A2 LTR MaLR -1 373 1 28 0 0 0 chr13 49970433 49970461 -69774437 + AT_rich Low_complexity Low_complexity 1 28 0 346 263 27 43 chr13 49970474 49970660 -69774238 + L1ME4a LINE L1 5935 6117 -4 702 309 88 29 chr13 49971263 49971638 -69773260 - MLT1I LTR MaLR -2 407 11 216 326 62 62 chr13 49972573 49972702 -69772196 - L2 LINE L2 -2 3270 3142 228 35 0 0 chr13 49973823 49973852 -69771046 + (TG)n Simple_repeat Simple_repeat 1 29 0 538 219 24 71 chr13 49974627 49974796 -69770102 + MER103 DNA DNA 4 164 -2 279 205 13 64 chr13 49975165 49975243 -69769655 - Tigger2 DNA MER2_type -10 2708 2635 5669 127 3 11 chr13 49975270 49976142 -69768756 - L1PA15 LINE L1 -2 6163 5299 2249 97 77 6 chr13 49976143 49976493 -69768405 - Tigger2 DNA MER2_type -64 2654 2280 407 194 0 0 chr13 49976491 49976558 -69768340 - Tigger2 DNA MER2_type -2649 69 3 * 1738 121 103 60 chr13 49977095 49977617 -69767281 + MER51A LTR ERV1 1 634 0 2131 114 10 3 chr13 49978578 49978876 -69766022 + AluSg SINE Alu 1 300 -10 191 359 13 0 chr13 49979028 49979106 -69765792 - MIR SINE MIR 0 262 184 716 224 6 38 chr13 49979369 49979552 -69765346 + MER5B DNA MER1_type 2 178 0 391 309 123 12 chr13 49980040 49980202 -69764696 - MIR SINE MIR -49 213 34 852 223 13 0 chr13 49980236 49980393 -69764505 + MER45A DNA AcHobo 6 164 -14 281 313 31 49 chr13 49980851 49981130 -69763768 + L1ME LINE L1 947 1201 -4879 5688 170 34 7 chr13 49981148 49982770 -69762128 + L1PA13 LINE L1 2160 6097 0 1333 267 135 42 chr13 49982746 49983589 -69761309 + L1M4 LINE L1 2865 3786 -2294 * 4950 153 25 29 chr13 49983591 49984461 -69760437 + Tigger1 DNA MER2_type 1 867 -1551 1263 166 36 5 chr13 49984555 49984778 -69760120 - MER97b DNA MER1_type? -816 237 8 485 308 117 71 chr13 49985102 49985211 -69759687 + L2 LINE L2 2773 2876 -396 486 33 0 0 chr13 49985211 49985271 -69759627 + (CA)n Simple_repeat Simple_repeat 2 61 0 485 308 117 71 chr13 49985271 49985637 -69759261 + L2 LINE L2 2876 3268 -4 340 214 12 12 chr13 49986760 49986844 -69758054 - MER117 DNA MER1_type -110 87 4 328 321 10 62 chr13 49987580 49987773 -69757125 + MER5A DNA MER1_type 7 189 0 822 209 117 0 chr13 49988933 49989129 -69755769 - MER58A DNA MER1_type 0 224 6 252 167 0 0 chr13 49989379 49989427 -69755471 + GA-rich Low_complexity Low_complexity 2 49 0 228 100 0 0 chr13 49989429 49989469 -69755429 + (CAGG)n Simple_repeat Simple_repeat 2 41 0 643 267 111 9 chr13 49989645 49989862 -69755036 + MIR SINE MIR 12 250 -12 271 236 97 0 chr13 49990021 49990093 -69754805 - L2 LINE L2 -5 3308 3230 1028 183 114 26 chr13 49990138 49990411 -69754487 + LTR50 LTR ERVL 1 297 -498 831 238 137 4 chr13 49990451 49990699 -69754199 + LTR50 LTR ERVL 510 790 -5 4980 165 47 3 chr13 49990840 49991821 -69753077 + L1MB3 LINE L1 5152 6182 -1 338 293 179 14 chr13 49992289 49992429 -69752469 + MIR SINE MIR 79 241 -21 229 347 40 0 chr13 49993073 49993148 -69751750 + MIR SINE MIR 53 130 -132 414 0 0 0 chr13 49993583 49993629 -69751269 + (TG)n Simple_repeat Simple_repeat 1 46 0 185 301 159 40 chr13 49993725 49993901 -69750997 - MIR3 SINE MIR -6 202 6 207 0 0 0 chr13 49994489 49994512 -69750386 + (T)n Simple_repeat Simple_repeat 1 23 0 228 281 0 0 chr13 49994943 49995000 -69749898 + GA-rich Low_complexity Low_complexity 1 57 0 207 139 0 0 chr13 49995000 49995036 -69749862 + (GAA)n Simple_repeat Simple_repeat 3 38 0 11242 185 16 14 chr13 49995177 49996930 -69747968 - L1PA16 LINE L1 -33 6133 4386 221 0 35 0 chr13 49996930 49996959 -69747939 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 11242 185 16 14 chr13 49996959 49998312 -69746586 - L1PA16 LINE L1 -1780 4386 3041 2364 85 0 0 chr13 49998312 49998606 -69746292 - AluY SINE Alu -17 294 1 11242 185 16 14 chr13 49998606 49998699 -69746199 - L1PA16 LINE L1 -3125 3041 2950 4558 121 65 70 chr13 49998699 50000125 -69744773 - pTR5 LTR ERV1 0 2438 66 13120 168 95 11 chr13 50000125 50003505 -69741393 - L1PBa LINE L1 -3192 3670 6 924 165 0 0 chr13 50004289 50004422 -69740476 - FLAM_C SINE Alu 0 133 1 1456 208 74 104 chr13 50004635 50005221 -69739677 - MLT1F1 LTR MaLR 0 567 1 334 386 0 0 chr13 50005533 50005665 -69739233 + MIR3 SINE MIR 77 208 0 1946 129 4 4 chr13 50006632 50006912 -69737986 - AluJo SINE Alu -32 280 1 284 281 0 0 chr13 50007042 50007106 -69737792 - MLT1I LTR MaLR -3 406 343 228 317 146 8 chr13 50007847 50007970 -69736928 - MLT1I LTR MaLR -189 220 81 2478 68 3 10 chr13 50008160 50008471 -69736427 + AluSg1 SINE Alu 1 309 0 441 364 61 23 chr13 50009449 50009710 -69735188 - L2 LINE L2 -491 2823 2553 401 335 43 6 chr13 50010014 50010178 -69734720 + MIR SINE MIR 56 225 -37 593 226 83 29 chr13 50010296 50010484 -69734414 + MIR SINE MIR 3 201 -61 2034 123 0 14 chr13 50011113 50011423 -69733475 - AluSx SINE Alu 0 312 9 198 169 28 42 chr13 50011650 50011721 -69733177 + GA-rich Low_complexity Low_complexity 2 71 0 229 239 18 37 chr13 50011805 50011914 -69732984 + GA-rich Low_complexity Low_complexity 1 107 0 248 303 26 0 chr13 50011966 50012042 -69732856 - L2 LINE L2 -9 3263 3186 182 204 0 37 chr13 50012713 50012767 -69732131 + CT-rich Low_complexity Low_complexity 3 54 0 218 385 62 0 chr13 50012919 50013049 -69731849 - MER5A DNA MER1_type -3 186 49 500 309 111 13 chr13 50013196 50013422 -69731476 + L2 LINE L2 2037 2300 -1014 2722 16 0 3 chr13 50013422 50013726 -69731172 + AluY SINE Alu 1 303 -8 500 309 111 13 chr13 50013726 50013797 -69731101 + L2 LINE L2 2300 2363 -951 326 190 63 0 chr13 50014195 50014274 -69730624 - L1M4 LINE L1 -924 5222 5139 477 322 12 31 chr13 50014278 50014536 -69730362 - L1MEc LINE L1 -4578 1683 1431 * 28374 68 9 5 chr13 50014533 50020647 -69724251 - L1PA6 LINE L1 0 6154 11 852 294 66 47 chr13 50020660 50021560 -69723338 - L1MEc LINE L1 -4819 1442 526 297 283 0 72 chr13 50021673 50021839 -69723059 - L1MEc LINE L1 -5539 531 378 895 311 118 39 chr13 50022083 50022887 -69722011 - L1MEd LINE L1 -5035 1084 217 249 324 29 0 chr13 50022940 50023076 -69721822 - L1MEd LINE L1 -5978 141 2 186 43 0 0 chr13 50023153 50023176 -69721722 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 516 303 13 43 chr13 50023188 50023419 -69721479 + MER102a DNA MER1_type 107 330 0 3194 78 48 2 chr13 50023431 50023864 -69721034 + MLT2A2 LTR ERVL 1 453 0 1646 183 136 18 chr13 50024263 50024646 -69720252 - MSTA LTR MaLR 0 428 1 196 227 23 0 chr13 50025316 50025360 -69719538 - L3b LINE CR1 -10 1573 1529 286 173 53 13 chr13 50026040 50026115 -69718783 + MER103 DNA DNA 43 120 -46 512 224 17 0 chr13 50027383 50027499 -69717399 - Charlie1 DNA MER1_type 0 2761 2644 925 203 45 0 chr13 50027538 50027760 -69717138 - Charlie1 DNA MER1_type -2529 232 1 195 336 154 59 chr13 50028322 50028542 -69716356 + L2 LINE L2 3014 3254 -18 559 306 54 61 chr13 50029111 50029556 -69715342 + LTR16C LTR ERVL 1 442 -49 185 320 33 41 chr13 50030877 50030999 -69713899 + MIR SINE MIR 18 138 -70 252 189 0 19 chr13 50032700 50032753 -69712145 + L2 LINE L2 3262 3313 0 395 227 27 36 chr13 50032819 50032929 -69711969 + MIR SINE MIR 10 118 -144 579 245 67 70 chr13 50033020 50033363 -69711535 - LTR37B LTR ERV1 -120 348 7 305 200 0 67 chr13 50033376 50033451 -69711447 + MIR SINE MIR 172 241 -21 191 252 58 117 chr13 50035479 50035582 -69709316 + MIR SINE MIR 28 124 -138 380 291 36 0 chr13 50035937 50036047 -69708851 - MIR3 SINE MIR -2 206 93 2291 102 30 0 chr13 50036178 50036481 -69708417 - AluSx SINE Alu 0 312 1 216 0 0 0 chr13 50036546 50036570 -69708328 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 182 309 15 0 chr13 50036956 50037024 -69707874 - MIR SINE MIR -88 174 106 209 211 0 0 chr13 50037095 50037133 -69707765 - MER91 DNA MER1_type -27 163 126 2259 186 122 20 chr13 50037857 50038563 -69706335 - MER69 DNA AcHobo 0 2526 1749 725 233 72 27 chr13 50038566 50038789 -69706109 - MER69 DNA AcHobo -2141 385 153 248 287 70 17 chr13 50038964 50039079 -69705819 + L2 LINE L2 3005 3125 -188 5161 147 2 0 chr13 50039116 50040328 -69704570 - L1PA16 LINE L1 0 6166 4927 251 238 107 0 chr13 50040405 50040489 -69704409 + L2 LINE L2 3218 3310 -3 391 292 102 22 chr13 50040647 50040784 -69704114 - MIR3 SINE MIR -60 148 1 290 242 220 8 chr13 50040924 50041056 -69703842 - MIR SINE MIR -55 207 48 39 60 0 0 chr13 50041151 50041218 -69703680 + AT_rich Low_complexity Low_complexity 1 67 0 233 333 11 0 chr13 50041728 50041821 -69703077 - L2 LINE L2 -456 2858 2765 2972 180 9 4 chr13 50042324 50042869 -69702029 - MER44D DNA MER2_type -1 604 2 963 255 83 9 chr13 50042911 50043237 -69701661 + MLT1J2 LTR MaLR 101 450 0 195 300 67 0 chr13 50044160 50044250 -69700648 - L2 LINE L2 0 3272 3177 253 258 8 137 chr13 50046221 50046345 -69698553 - L2 LINE L2 -173 3099 2992 225 0 0 0 chr13 50048376 50048401 -69696497 + (A)n Simple_repeat Simple_repeat 1 25 0 243 267 20 20 chr13 50048875 50048976 -69695922 - L1MC4a LINE L1 -1633 6175 6075 802 275 41 34 chr13 50049036 50049599 -69695299 - L1ME4a LINE L1 -142 5979 5410 1071 160 35 113 chr13 50049719 50050063 -69694835 + MER33 DNA MER1_type 7 323 -1 238 289 101 0 chr13 50050211 50050360 -69694538 - L1P LINE L1 -1105 5041 4878 501 281 61 64 chr13 50050382 50050674 -69694224 - L1ME4a LINE L1 -1408 4738 4447 2081 126 0 40 chr13 50050674 50050999 -69693899 - AluSx SINE Alu 0 312 1 501 281 61 64 chr13 50050999 50051724 -69693174 - L1ME4a LINE L1 -1699 4447 3728 769 253 74 0 chr13 50052054 50052256 -69692642 + MER58A DNA MER1_type 7 223 -1 948 99 0 0 chr13 50053069 50053190 -69691708 + AluSg/x SINE Alu 156 276 -36 440 65 0 0 chr13 50053190 50053252 -69691646 + Alu SINE Alu 242 303 -8 25 0 0 0 chr13 50053357 50053382 -69691516 + AT_rich Low_complexity Low_complexity 1 25 0 280 348 54 9 chr13 50054738 50054850 -69690048 + L2 LINE L2 3156 3272 0 180 268 0 0 chr13 50057273 50057344 -69687554 + (TG)n Simple_repeat Simple_repeat 1 71 0 2186 125 0 3 chr13 50058042 50058345 -69686553 + AluSx SINE Alu 3 304 -8 331 268 0 0 chr13 50058949 50059046 -69685852 + (TA)n Simple_repeat Simple_repeat 1 97 0 694 200 0 0 chr13 50059242 50059362 -69685536 - 5S rRNA rRNA -1 120 1 345 100 0 0 chr13 50060552 50060602 -69684296 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 290 139 0 0 chr13 50060879 50060922 -69683976 + L1MD2 LINE L1 6068 6110 -249 252 0 0 0 chr13 50060934 50060962 -69683936 + (CA)n Simple_repeat Simple_repeat 2 29 0 246 32 0 0 chr13 50061012 50061043 -69683855 + (TG)n Simple_repeat Simple_repeat 2 32 0 374 244 47 0 chr13 50061085 50061220 -69683678 + L1MD2 LINE L1 6196 7806 -32 375 194 185 9 chr13 50064735 50064843 -69680055 - L2 LINE L2 -5 3308 3182 723 220 112 70 chr13 50064849 50065320 -69679578 - MLT1D LTR MaLR 0 467 1 4366 277 142 23 chr13 50065322 50066984 -69677914 - L2 LINE L2 -129 3184 1221 1655 168 16 6 chr13 50066984 50067305 -69677593 - MER33 DNA MER1_type 0 324 1 4366 277 142 23 chr13 50067305 50067645 -69677253 - L2 LINE L2 -2092 1221 923 263 59 0 0 chr13 50068210 50068244 -69676654 + U2 snRNA snRNA 3 36 -152 270 217 0 0 chr13 50068281 50068350 -69676548 + (CA)n Simple_repeat Simple_repeat 2 70 0 985 298 146 21 chr13 50069822 50070342 -69674556 + MLT1K LTR MaLR 4 588 0 291 187 132 22 chr13 50070686 50070777 -69674121 + L1MEd LINE L1 54 154 -5965 312 346 73 42 chr13 50070797 50071207 -69673691 + L1MEd LINE L1 389 811 -5308 626 134 30 67 chr13 50071215 50071349 -69673549 - MER1B DNA MER1_type 0 339 211 190 286 0 0 chr13 50071668 50071717 -69673181 + L2 LINE L2 3265 3313 0 1873 44 0 0 chr13 50072122 50072350 -69672548 - L1PA5 LINE L1 -7 6147 5920 1283 187 0 0 chr13 50072350 50072554 -69672344 - MER1B DNA MER1_type -168 211 5 485 277 58 33 chr13 50072646 50072975 -69671923 + L1MEd LINE L1 919 1255 -4864 255 249 147 40 chr13 50073020 50073197 -69671701 + HAL1 LINE L1 1437 1632 -875 1919 147 0 26 chr13 50073652 50073958 -69670940 + AluJo SINE Alu 1 298 -14 299 250 10 0 chr13 50074135 50074239 -69670659 + L1MEd LINE L1 2203 2307 -3822 316 289 134 24 chr13 50074471 50074882 -69670016 + L1MEd LINE L1 2653 3108 -3021 1207 82 155 43 chr13 50075238 50075445 -69669453 - MER30 DNA MER1_type 0 230 1 234 71 119 0 chr13 50077007 50077049 -69667849 + MLT1K LTR MaLR 54 100 -405 323 272 33 11 chr13 50077195 50077287 -69667611 + MIR SINE MIR 119 212 -50 246 62 0 0 chr13 50077365 50077397 -69667501 + (GGGGA)n Simple_repeat Simple_repeat 3 34 0 194 152 0 43 chr13 50077399 50077445 -69667453 + A-rich Low_complexity Low_complexity 2 45 0 226 321 12 12 chr13 50077990 50078071 -69666827 - MIR SINE MIR -71 137 57 6699 111 8 1 chr13 50078078 50079141 -69665757 - L1PA7 LINE L1 -2331 3815 2746 11129 77 16 8 chr13 50079142 50081447 -69663451 + L1PA7 LINE L1 3828 6149 -5 299 207 45 0 chr13 50082573 50082648 -69662250 + GA-rich Low_complexity Low_complexity 4 87 -32 2493 84 0 0 chr13 50082648 50082957 -69661941 + AluY SINE Alu 1 309 -2 299 207 45 0 chr13 50082957 50082992 -69661906 + GA-rich Low_complexity Low_complexity 87 119 0 1245 205 62 62 chr13 50084928 50085299 -69659599 + MLT1B LTR MaLR 1 371 -19 245 319 17 16 chr13 50085427 50085542 -69659356 + MIR SINE MIR 23 140 -68 466 275 50 25 chr13 50086112 50086272 -69658626 - MIR SINE MIR -78 184 21 338 175 57 153 chr13 50087779 50087839 -69657059 + MER104 DNA Tc2 2 66 -1832 917 188 29 0 chr13 50087839 50088009 -69656889 + FAM SINE Alu 1 175 0 338 175 57 153 chr13 50088009 50088125 -69656773 + MER104 DNA Tc2 66 161 -19 986 164 16 11 chr13 50088200 50088389 -69656509 + MER20 DNA MER1_type 28 217 -2 208 292 146 21 chr13 50088640 50088736 -69656162 - MIR3 SINE MIR -90 118 11 195 270 83 64 chr13 50088979 50089183 -69655715 + L3b LINE CR1 1176 1383 -200 300 296 90 98 chr13 50089457 50089856 -69655042 + L1M2 LINE L1 748 1143 -5706 21 71 0 0 chr13 50091380 50091422 -69653476 + AT_rich Low_complexity Low_complexity 1 42 0 257 223 96 57 chr13 50092197 50092354 -69652544 + MLT1K LTR MaLR 84 246 -342 1290 270 71 26 chr13 50092482 50092949 -69651949 - MLT1L LTR MaLR -33 582 95 523 254 17 94 chr13 50093172 50093460 -69651438 + MLT1K LTR MaLR 311 576 -12 31 20 0 20 chr13 50095244 50095266 -69649632 + AT_rich Low_complexity Low_complexity 1 22 -26 2096 149 0 19 chr13 50095266 50095582 -69649316 - AluSx SINE Alu 0 312 3 31 20 0 20 chr13 50095582 50095608 -69649290 + AT_rich Low_complexity Low_complexity 22 48 0 38 39 0 0 chr13 50096186 50096238 -69648660 + AT_rich Low_complexity Low_complexity 1 52 0 257 50 0 25 chr13 50096772 50096812 -69648086 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2021 105 0 3 chr13 50096812 50097117 -69647781 + L1MA4 LINE L1 5479 5782 -518 813 116 0 0 chr13 50097117 50097229 -69647669 + AluSg/x SINE Alu 174 285 -25 2384 164 34 47 chr13 50097229 50097764 -69647134 + L1MA4 LINE L1 5766 6293 -7 317 288 52 26 chr13 50097873 50098026 -69646872 + L1MC/D LINE L1 5122 5278 -868 245 200 19 43 chr13 50098101 50098224 -69646674 + L1MC/D LINE L1 5374 5426 -736 1792 235 82 40 chr13 50098514 50099268 -69645630 - L1MC4 LINE L1 -29 8013 7228 224 162 297 0 chr13 50099270 50099344 -69645554 - L2 LINE L2 -528 2786 2691 225 0 0 0 chr13 50099464 50099489 -69645409 + (CA)n Simple_repeat Simple_repeat 2 26 0 337 298 65 16 chr13 50099492 50099616 -69645282 + MIR SINE MIR 32 161 -101 2413 121 53 22 chr13 50100167 50100582 -69644316 + MSTA LTR MaLR 1 428 0 259 317 20 27 chr13 50101052 50101345 -69643553 + L1MC5 LINE L1 7504 7794 -167 233 375 0 0 chr13 50101345 50101425 -69643473 + GA-rich Low_complexity Low_complexity 6 85 0 226 221 12 35 chr13 50101426 50101512 -69643386 + L1MC4 LINE L1 7918 8001 -41 286 234 75 11 chr13 50101776 50101870 -69643028 + MIR SINE MIR 163 262 0 22721 164 25 16 chr13 50102104 50108308 -69636590 + L1PA11 LINE L1 1 7608 -4 4827 178 14 10 chr13 50108540 50110338 -69634560 + L1MB2 LINE L1 4316 6122 -49 2316 104 0 0 chr13 50110338 50110637 -69634261 + AluSx SINE Alu 1 299 -13 4827 178 14 10 chr13 50110637 50110672 -69634226 + L1MB2 LINE L1 6122 6155 -16 180 0 0 0 chr13 50110675 50110695 -69634203 + (TAA)n Simple_repeat Simple_repeat 2 21 0 897 155 48 170 chr13 50111544 50111722 -69633176 + MER8 DNA MER2_type 1 136 -103 2305 88 17 0 chr13 50111722 50112016 -69632882 + AluSx SINE Alu 1 299 -13 897 155 48 170 chr13 50112016 50112108 -69632790 + MER8 DNA MER2_type 136 238 -1 319 273 85 18 chr13 50112200 50112282 -69632616 + L1ME4a LINE L1 5752 5827 -294 3342 170 8 15 chr13 50112282 50112889 -69632009 + MER6A DNA MER2_type 1 603 -2 319 273 85 18 chr13 50112889 50112971 -69631927 + L1ME4a LINE L1 5827 5927 -194 442 299 58 56 chr13 50113047 50113458 -69631440 + L1ME2 LINE L1 918 1329 -5618 763 106 23 8 chr13 50113531 50113663 -69631235 + T-rich Low_complexity Low_complexity 4 137 0 527 164 0 18 chr13 50113653 50113763 -69631135 + CT-rich Low_complexity Low_complexity 1 108 0 * 560 257 113 24 chr13 50114054 50114548 -69630350 + L1ME2 LINE L1 1331 1792 -5063 2681 219 26 32 chr13 50114553 50115420 -69629478 + L1ME2 LINE L1 4660 5521 -1436 1874 213 106 39 chr13 50115456 50116363 -69628535 + L1ME2 LINE L1 5765 6728 -247 624 178 172 44 chr13 50116405 50116585 -69628313 + MLT1E3 LTR MaLR 56 258 -368 804 191 74 57 chr13 50116627 50116794 -69628104 + MLT1E3 LTR MaLR 391 566 -58 2326 71 0 0 chr13 50116794 50117118 -69627780 + AluY SINE Alu 1 324 0 804 191 74 57 chr13 50117118 50117179 -69627719 + MLT1E3 LTR MaLR 566 624 0 543 265 61 10 chr13 50117179 50117375 -69627523 + L1ME2 LINE L1 6718 6923 -52 2035 244 34 19 chr13 50117401 50118023 -69626875 + L1ME2 LINE L1 5437 6067 -97 283 193 0 0 chr13 50118023 50118080 -69626818 - MER31A LTR ERV1 -9 476 420 2296 100 3 3 chr13 50118411 50118720 -69626178 + AluSx SINE Alu 1 309 -3 25 0 0 0 chr13 50118720 50118745 -69626153 + AT_rich Low_complexity Low_complexity 1 25 0 302 254 92 34 chr13 50119182 50119436 -69625462 + L1ME4a LINE L1 5329 5600 -521 734 250 53 26 chr13 50119527 50119831 -69625067 + L1ME4a LINE L1 5615 5926 -195 2893 136 6 24 chr13 50119967 50120461 -69624437 - MER31A LTR ERV1 0 485 1 1533 196 60 69 chr13 50120665 50121202 -69623696 - L1ME1 LINE L1 -5 6161 5630 512 130 0 122 chr13 50121247 50121362 -69623536 + MER46A DNA MER2_type 1 101 -135 949 241 17 23 chr13 50121482 50121864 -69623034 - MLT2B1 LTR ERVL -43 477 1 3134 202 16 31 chr13 50121864 50122479 -69622419 - L1ME1 LINE L1 -532 5634 5047 2444 38 0 56 chr13 50122479 50122799 -69622099 - AluY SINE Alu -9 302 1 3134 202 16 31 chr13 50122799 50123326 -69621572 - L1ME1 LINE L1 -1119 5047 4513 231 36 0 0 chr13 50124487 50124515 -69620383 + (T)n Simple_repeat Simple_repeat 1 28 0 341 240 192 0 chr13 50124886 50124990 -69619908 - L2 LINE L2 -3 3310 3187 1159 186 57 0 chr13 50125681 50125891 -69619007 - MER58A DNA MER1_type -1 223 2 1712 78 0 0 chr13 50125891 50126096 -69618802 + AluSc SINE Alu 80 284 -25 25 0 0 0 chr13 50126113 50126138 -69618760 + AT_rich Low_complexity Low_complexity 1 25 0 1627 94 31 0 chr13 50126447 50126670 -69618228 - MER30 DNA MER1_type 0 230 1 366 322 101 66 chr13 50126690 50127007 -69617891 - L2 LINE L2 0 3272 2945 219 316 99 67 chr13 50127211 50127464 -69617434 - L2 LINE L2 -601 2713 2453 1914 149 33 27 chr13 50127495 50127830 -69617068 + MER1B DNA MER1_type 1 337 -2 2686 129 18 0 chr13 50127934 50128377 -69616521 - L1MB3 LINE L1 -15 6168 5718 376 316 81 0 chr13 50128719 50128893 -69616005 - L1MEc LINE L1 -4585 1811 1624 2047 153 0 3 chr13 50129027 50129327 -69615571 + AluSx SINE Alu 1 299 -13 416 271 65 57 chr13 50129355 50129602 -69615296 + L1ME3A LINE L1 4993 5241 -905 598 319 60 23 chr13 50129619 50130190 -69614708 + L1ME3A LINE L1 5267 5858 -312 819 216 20 106 chr13 50130238 50130323 -69614575 - LTR16A LTR ERVL -12 438 347 1584 212 6 3 chr13 50130323 50130634 -69614264 + AluJb SINE Alu 1 312 0 819 216 20 106 chr13 50130634 50130802 -69614096 - LTR16A LTR ERVL -103 347 207 350 296 86 18 chr13 50130845 50131034 -69613864 - L1M4 LINE L1 -905 5241 5037 320 247 0 59 chr13 50131907 50131992 -69612906 - L2 LINE L2 -9 3304 3225 4571 160 44 15 chr13 50131995 50133001 -69611897 + L1MC2 LINE L1 5156 6335 -9 228 314 126 16 chr13 50133001 50133192 -69611706 - L2 LINE L2 -82 3231 3020 739 238 71 58 chr13 50133302 50133879 -69611019 + L1MC5 LINE L1 7260 7758 -203 22 56 0 0 chr13 50134031 50134067 -69610831 + AT_rich Low_complexity Low_complexity 1 36 0 320 235 24 12 chr13 50134154 50134239 -69610659 + L1MC5 LINE L1 7832 7917 -44 206 295 85 31 chr13 50135627 50135756 -69609142 - L2 LINE L2 -2583 731 596 287 242 11 22 chr13 50135845 50135936 -69608962 + MLT1K LTR MaLR 499 588 0 21 0 0 0 chr13 50136006 50136027 -69608871 + AT_rich Low_complexity Low_complexity 1 21 0 1131 153 94 30 chr13 50136121 50136324 -69608574 + AluJb SINE Alu 87 302 -10 214 350 15 85 chr13 50136502 50136702 -69608196 - MIR3 SINE MIR -21 187 2 764 240 27 0 chr13 50137532 50137715 -69607183 - MER63A DNA MER1_type -14 196 9 205 170 0 106 chr13 50138979 50139026 -69605872 - L2 LINE L2 -3153 161 120 996 33 0 0 chr13 50139188 50139308 -69605590 - L1PA3 LINE L1 0 6155 6036 3404 133 25 7 chr13 50140515 50141079 -69603819 + MER50 LTR ERV1 138 711 -23 219 328 180 8 chr13 50142019 50142147 -69602751 - MIR3 SINE MIR -43 165 16 6851 100 15 5 chr13 50142687 50143831 -69601067 + L1MA2 LINE L1 5143 6304 0 23 0 0 0 chr13 50143831 50143854 -69601044 + AT_rich Low_complexity Low_complexity 1 23 0 216 282 47 12 chr13 50144697 50144782 -69600116 - L3b LINE CR1 -201 1382 1295 24 0 0 0 chr13 50144996 50145020 -69599878 + AT_rich Low_complexity Low_complexity 1 24 0 249 219 35 44 chr13 50145129 50145243 -69599655 + (CATATA)n Simple_repeat Simple_repeat 4 116 0 2040 164 20 0 chr13 50145357 50145698 -69599200 - MER7A DNA MER2_type 0 346 1 248 315 27 46 chr13 50146367 50146586 -69598312 - MER112 DNA MER1_type -34 226 12 1475 269 44 29 chr13 50146756 50147232 -69597666 + L2 LINE L2 2815 3297 -16 2861 7 0 0 chr13 50147325 50147635 -69597263 - AluYa5 SINE Alu -1 310 1 2019 226 59 6 chr13 50150254 50150797 -69594101 - MER90 LTR ERV1 -3 572 1 230 229 14 57 chr13 50151551 50151621 -69593277 - L2 LINE L2 -4 3268 3202 711 296 22 9 chr13 50151636 50151866 -69593032 + MIR SINE MIR 16 248 -14 5473 86 9 14 chr13 50152535 50153197 -69591701 - L1PA10 LINE L1 -11 6157 5498 2567 64 0 10 chr13 50153197 50153508 -69591390 - AluSp SINE Alu -5 308 1 5473 86 9 14 chr13 50153508 50153647 -69591251 - L1PA10 LINE L1 -670 5498 5360 348 221 127 17 chr13 50153875 50154056 -69590842 + L1ME4a LINE L1 5704 5904 -217 1132 212 20 4 chr13 50154176 50154421 -69590477 + MER44D DNA MER2_type 1 249 -456 1128 151 33 0 chr13 50154420 50154632 -69590266 + MER44D DNA MER2_type 332 605 0 * 2154 116 7 0 chr13 50155120 50155422 -69589476 - AluSx SINE Alu -8 304 1 21 36 0 0 chr13 50155961 50155989 -69588909 + GC_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr13 50156429 50156460 -69588438 + GC_rich Low_complexity Low_complexity 1 31 0 1745 214 90 28 chr13 50157291 50157902 -69586996 - L1ME3 LINE L1 -22 6140 5492 685 160 131 51 chr13 50158503 50158678 -69586220 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr13 50160191 50160212 -69584686 + AT_rich Low_complexity Low_complexity 1 21 0 446 251 26 77 chr13 50161214 50161409 -69583489 + MIR SINE MIR 68 252 -10 310 284 83 41 chr13 50161471 50161689 -69583209 + L2 LINE L2 2824 3050 -222 188 206 0 0 chr13 50161783 50161817 -69583081 - L2 LINE L2 -13 3300 3267 23 68 0 0 chr13 50162261 50162305 -69582593 + AT_rich Low_complexity Low_complexity 1 44 0 391 247 70 71 chr13 50163765 50163982 -69580916 - MIR SINE MIR -42 220 4 2444 45 0 7 chr13 50164369 50164678 -69580220 - AluY SINE Alu 0 311 1 323 304 256 10 chr13 50165934 50166141 -69578757 + MIR SINE MIR 5 262 0 1940 105 10 66 chr13 50166238 50166589 -69578309 - AluSx SINE Alu 0 312 1 607 256 119 18 chr13 50167322 50167541 -69577357 - MIR SINE MIR -14 248 8 5755 216 64 51 chr13 50167942 50170808 -69574090 + L1ME3 LINE L1 39 3035 -3609 1752 161 43 0 chr13 50170809 50171088 -69573810 - AluJb SINE Alu -21 291 1 3751 237 112 25 chr13 50171088 50172394 -69572504 - L1MEc LINE L1 -4942 1454 35 23 54 0 0 chr13 50172858 50172895 -69572003 + AT_rich Low_complexity Low_complexity 1 37 0 525 300 91 4 chr13 50173206 50173436 -69571462 - MIR SINE MIR 0 262 13 203 286 20 0 chr13 50173482 50173531 -69571367 - MIR SINE MIR -147 115 66 804 264 31 9 chr13 50174860 50175087 -69569811 - MIR SINE MIR -8 254 23 21 0 0 0 chr13 50175091 50175112 -69569786 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr13 50175174 50175198 -69569700 + (T)n Simple_repeat Simple_repeat 1 24 0 210 37 0 0 chr13 50175653 50175680 -69569218 + (TG)n Simple_repeat Simple_repeat 1 27 0 6158 173 75 10 chr13 50177532 50178197 -69566701 - Charlie1a DNA MER1_type -1306 1455 834 252 0 0 0 chr13 50178197 50178225 -69566673 + (CA)n Simple_repeat Simple_repeat 2 29 0 6158 173 75 10 chr13 50178225 50178922 -69565976 - Charlie1a DNA MER1_type -1927 834 5 331 333 18 0 chr13 50181455 50181569 -69563329 + MIR SINE MIR 27 142 -66 1963 155 0 16 chr13 50183454 50183764 -69561134 - AluJb SINE Alu -3 309 5 4410 208 78 50 chr13 50183820 50184726 -69560172 + L1ME3 LINE L1 4231 5110 -1534 2130 150 3 15 chr13 50184726 50185067 -69559831 - MER1B DNA MER1_type 0 337 1 4410 208 78 50 chr13 50185067 50185171 -69559727 + L1ME3 LINE L1 5110 5210 -1434 1538 206 0 52 chr13 50185171 50185314 -69559584 + AluJo SINE Alu 4 153 -159 2284 87 0 10 chr13 50185314 50185612 -69559286 + AluY SINE Alu 1 295 -16 1538 206 0 52 chr13 50185612 50185793 -69559105 + AluJo SINE Alu 153 311 -1 4410 208 78 50 chr13 50185793 50186203 -69558695 + L1ME3 LINE L1 5210 5692 -952 716 232 53 68 chr13 50186284 50186618 -69558280 + L1ME3 LINE L1 6284 6637 -25 304 294 139 15 chr13 50187417 50187618 -69557280 - MIR SINE MIR -16 246 21 2106 107 28 16 chr13 50188874 50189193 -69555705 - MER4A LTR ERV1 0 664 342 410 151 0 0 chr13 50189183 50189256 -69555642 - LTR1B LTR ERV1 -753 73 1 * 596 120 10 0 chr13 50190224 50190324 -69554574 + (CGGGA)n Simple_repeat Simple_repeat 4 104 0 317 157 176 29 chr13 50190353 50190455 -69554443 - MER112 DNA MER1_type -143 117 1 1897 109 0 0 chr13 50190608 50190874 -69554024 + L1PA8 LINE L1 5907 6172 0 23 0 0 0 chr13 50190874 50190897 -69554001 + AT_rich Low_complexity Low_complexity 1 23 0 681 221 176 25 chr13 50191227 50191426 -69553472 - MIR SINE MIR -32 230 2 363 306 252 19 chr13 50192033 50192239 -69552659 - MIR SINE MIR -8 254 1 192 182 0 0 chr13 50192780 50192824 -69552074 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 193 241 157 83 chr13 50192824 50192932 -69551966 - MIR3 SINE MIR -5 203 88 357 24 0 0 chr13 50193628 50193670 -69551228 + (TG)n Simple_repeat Simple_repeat 2 43 0 389 263 154 40 chr13 50194013 50194188 -69550710 - MIR SINE MIR -57 205 11 1243 197 9 5 chr13 50197128 50197351 -69547547 - MER58A DNA MER1_type 0 224 1 1019 175 6 0 chr13 50198263 50198423 -69546475 + FAM SINE Alu 9 169 -16 1985 154 3 0 chr13 50198650 50198942 -69545956 - AluSx SINE Alu -19 293 1 472 224 119 66 chr13 50200565 50200868 -69544030 - L1ME4a LINE L1 -79 6042 5724 252 254 69 15 chr13 50201157 50201287 -69543611 - L1P LINE L1 -760 5391 5255 577 27 27 0 chr13 50203142 50203217 -69541681 - AluY SINE Alu -12 297 221 5680 116 23 3 chr13 50203331 50204872 -69540026 - L1PA16 LINE L1 0 6166 4615 507 284 97 24 chr13 50204894 50205438 -69539460 - L1ME4a LINE L1 -248 5942 5357 317 279 65 71 chr13 50205487 50205686 -69539212 - L1ME4a LINE L1 -913 5302 5104 2443 84 3 0 chr13 50205686 50205994 -69538904 - AluSp SINE Alu -4 309 1 317 279 65 71 chr13 50205994 50206088 -69538810 - L1ME4a LINE L1 -1111 5104 5011 862 323 88 38 chr13 50206102 50207011 -69537887 - L1ME4a LINE L1 -1487 4728 3767 2910 227 138 10 chr13 50207157 50208052 -69536846 - L1MC4 LINE L1 -419 7623 6614 3187 213 14 29 chr13 50208062 50208892 -69536006 - L1M4 LINE L1 -2127 4019 3202 1011 255 63 64 chr13 50208890 50209398 -69535500 - L1ME4a LINE L1 -4843 1553 1044 * 2283 81 3 0 chr13 50209398 50209705 -69535193 - AluSp SINE Alu 0 308 1 1011 255 63 64 chr13 50209705 50209894 -69535004 - L1ME4a LINE L1 -5352 1044 856 951 230 127 32 chr13 50209904 50210157 -69534741 - L1MD3 LINE L1 -15 7980 7686 2273 95 3 3 chr13 50210157 50210453 -69534445 + AluSp SINE Alu 1 296 -17 951 230 127 32 chr13 50210453 50210538 -69534360 - L1MD3 LINE L1 -309 7686 7610 248 86 0 0 chr13 50210540 50210575 -69534323 - L1MC4a LINE L1 -603 7205 7171 367 184 58 11 chr13 50210607 50210694 -69534204 - MIR SINE MIR 0 262 172 223 385 71 12 chr13 50211007 50211176 -69533722 + L2 LINE L2 2883 3061 -252 1622 142 7 157 chr13 50211268 50211676 -69533222 + MER7A DNA MER2_type 2 346 0 222 328 30 0 chr13 50211679 50211746 -69533152 + L2 LINE L2 3204 3272 0 203 222 0 14 chr13 50212419 50212491 -69532407 + (CATA)n Simple_repeat Simple_repeat 2 72 0 239 212 106 83 chr13 50213226 50213358 -69531540 + MIR3 SINE MIR 48 182 -26 221 295 0 0 chr13 50213421 50213482 -69531416 - MIR SINE MIR -14 248 188 406 345 57 17 chr13 50213681 50213858 -69531040 - MIR SINE MIR -50 212 29 1462 183 73 24 chr13 50214375 50214664 -69530234 + AluJo SINE Alu 1 303 -9 200 260 268 63 chr13 50214664 50214791 -69530107 - MIR SINE MIR -75 187 35 399 296 85 45 chr13 50215276 50215499 -69529399 - L2 LINE L2 0 3272 3041 2275 104 3 22 chr13 50217608 50217924 -69526974 - AluSx SINE Alu -2 310 1 782 273 53 20 chr13 50218096 50218396 -69526502 + L1ME LINE L1 5437 5746 -375 1914 155 0 37 chr13 50218432 50218755 -69526143 + AluJb SINE Alu 1 311 -1 302 296 12 0 chr13 50218796 50218877 -69526021 + CT-rich Low_complexity Low_complexity 3 84 0 274 261 18 63 chr13 50220465 50220576 -69524322 + L2 LINE L2 2230 2335 -979 790 137 11 28 chr13 50220618 50220800 -69524098 + GA-rich Low_complexity Low_complexity 1 179 0 255 306 54 76 chr13 50221262 50221612 -69523286 + L2 LINE L2 2856 3179 -93 1737 229 55 47 chr13 50221636 50222190 -69522708 + MER68 LTR ERV1 2 562 0 704 180 8 8 chr13 50222631 50222753 -69522145 - MER5B DNA MER1_type -6 172 51 2838 9 0 0 chr13 50224052 50224369 -69520529 - AluYb8 SINE Alu -1 317 1 184 306 0 0 chr13 50225042 50225091 -69519807 - L2 LINE L2 -2088 1226 1178 285 282 100 22 chr13 50225132 50225272 -69519626 - MIR3 SINE MIR -35 173 21 244 324 73 10 chr13 50226469 50226673 -69518225 + L1 LINE L1 3709 3925 -2221 882 96 32 0 chr13 50226676 50226801 -69518097 + THE1C LTR MaLR 195 323 -52 398 339 88 18 chr13 50226807 50226978 -69517920 + L1 LINE L1 3912 4094 -2052 289 253 102 49 chr13 50226987 50227252 -69517646 + L1 LINE L1 4151 4429 -1717 319 306 73 8 chr13 50227456 50227580 -69517318 - MIR SINE MIR -5 257 126 260 233 67 33 chr13 50227660 50227750 -69517148 - L1ME4a LINE L1 -44 6077 5985 189 195 0 0 chr13 50228174 50228215 -69516683 + (CA)n Simple_repeat Simple_repeat 2 42 0 43417 33 25 3 chr13 50228296 50234312 -69510586 + L1PA2 LINE L1 1 6150 -5 21 0 0 0 chr13 50234342 50234363 -69510535 + AT_rich Low_complexity Low_complexity 1 21 0 2179 62 7 4 chr13 50234814 50235090 -69509808 - AluSp SINE Alu -32 281 5 271 341 83 0 chr13 50236287 50236419 -69508479 + MIR SINE MIR 102 244 -18 685 256 28 11 chr13 50238870 50239046 -69505852 - MIR SINE MIR -8 254 76 476 290 62 42 chr13 50239108 50239301 -69505597 + MIR SINE MIR 59 255 -7 316 230 0 14 chr13 50239320 50239394 -69505504 + Tigger5 DNA MER2_type 2251 2323 0 446 96 110 14 chr13 50239474 50239547 -69505351 + Tigger5 DNA MER2_type 2244 2323 0 192 200 0 79 chr13 50239621 50239725 -69505173 - MIR SINE MIR -83 179 37 396 179 0 0 chr13 50240428 50240506 -69504392 + C-rich Low_complexity Low_complexity 4 81 0 620 248 107 20 chr13 50241351 50241579 -69503319 + MIR SINE MIR 13 262 0 318 50 0 0 chr13 50242432 50242472 -69502426 + (CA)n Simple_repeat Simple_repeat 2 41 0 186 206 0 0 chr13 50242882 50242916 -69501982 + MIR SINE MIR 107 140 -122 295 265 99 40 chr13 50244286 50244509 -69500389 + L1ME4a LINE L1 5886 6121 0 355 287 102 30 chr13 50245792 50245959 -69498939 - MIR SINE MIR -43 219 41 251 306 60 45 chr13 50245980 50246114 -69498784 + MER5A DNA MER1_type 17 152 -37 195 219 0 94 chr13 50247962 50248026 -69496872 - MER5A DNA MER1_type -51 138 81 205 263 144 6 chr13 50248311 50248424 -69496474 + MIR SINE MIR 54 256 -6 705 291 196 16 chr13 50248841 50249219 -69495679 + L2 LINE L2 2826 3271 -42 197 212 0 0 chr13 50251005 50251038 -69493860 + MER5B DNA MER1_type 4 36 -142 309 259 63 116 chr13 50251490 50251679 -69493219 + MER91A DNA MER1_type 3 181 -15 191 265 199 51 chr13 50253974 50254170 -69490728 + L2 LINE L2 1177 1401 -1913 611 282 31 6 chr13 50254500 50254663 -69490235 - MIR SINE MIR -48 214 48 626 273 26 39 chr13 50254778 50255009 -69489889 - MIR SINE MIR -12 250 23 1159 114 0 0 chr13 50255487 50255654 -69489244 + AluSg/x SINE Alu 143 309 -3 201 341 96 36 chr13 50255690 50255857 -69489041 + MIR SINE MIR 9 185 -77 538 213 19 84 chr13 50256029 50256184 -69488714 + MIR3 SINE MIR 30 174 -34 676 301 70 18 chr13 50256863 50257214 -69487684 - L1MC/D LINE L1 -469 5652 5374 243 309 0 0 chr13 50259303 50259387 -69485511 + L1MC4 LINE L1 6621 6704 -1338 256 359 35 7 chr13 50259435 50259577 -69485321 + L2 LINE L2 3158 3303 -10 351 294 24 8 chr13 50260616 50260742 -69484156 + MIR SINE MIR 66 193 -69 * 704 258 99 5 chr13 50260731 50260944 -69483954 + MIR SINE MIR 16 248 -14 515 290 43 24 chr13 50263315 50263648 -69481250 + MLT1J LTR MaLR 75 447 -64 432 223 163 41 chr13 50264336 50264742 -69480156 + MLT1E LTR MaLR 21 547 -8 383 219 14 0 chr13 50264855 50264928 -69479970 + MER91A DNA MER1_type 1 74 -122 183 315 56 0 chr13 50265019 50265108 -69479790 + L2 LINE L2 2766 2859 -455 847 232 38 21 chr13 50266411 50266648 -69478250 - L1MA9 LINE L1 -37 6275 6035 549 124 112 0 chr13 50266641 50266730 -69478168 + L1MA9 LINE L1 5681 5779 -533 * 467 114 25 0 chr13 50266730 50266809 -69478089 + (TCTG)n Simple_repeat Simple_repeat 3 83 0 1057 187 34 67 chr13 50266809 50267076 -69477822 + L1MA9 LINE L1 5783 6040 -272 303 322 144 0 chr13 50267076 50267194 -69477704 - MIR SINE MIR -78 184 50 798 131 8 23 chr13 50267694 50267816 -69477082 + FLAM_C SINE Alu 2 123 -189 294 73 0 0 chr13 50267816 50267857 -69477041 + (CA)n Simple_repeat Simple_repeat 2 42 0 336 261 41 118 chr13 50268601 50268796 -69476102 + MIR SINE MIR 33 212 -50 1008 102 7 0 chr13 50270833 50270980 -69473918 - L1PA15 LINE L1 0 6165 6018 1682 153 3 20 chr13 50271671 50271966 -69472932 - AluJo SINE Alu -22 290 1 204 248 168 24 chr13 50272276 50272401 -69472497 + MIR3 SINE MIR 51 193 -15 364 268 47 55 chr13 50272640 50272767 -69472131 + MIR SINE MIR 28 153 -109 14275 67 11 0 chr13 50272999 50275657 -69469241 + L1PA6 LINE L1 3491 6154 0 232 254 200 9 chr13 50275781 50275891 -69469007 - L2 LINE L2 -21 3251 3121 309 389 8 0 chr13 50276769 50276900 -69467998 + MIR SINE MIR 20 151 -111 747 222 35 43 chr13 50277563 50277793 -69467105 - MER112 DNA MER1_type -31 229 2 184 306 41 82 chr13 50278029 50278127 -69466771 - L2 LINE L2 -55 3217 3124 1603 199 167 12 chr13 50278210 50278612 -69466286 - MLT1C LTR MaLR 0 467 4 358 198 174 0 chr13 50279259 50279345 -69465553 - L2 LINE L2 -10 3303 3203 626 147 101 0 chr13 50279897 50280026 -69464872 - L1MB7 LINE L1 0 6184 6043 518 163 0 0 chr13 50280188 50280268 -69464630 - AluJ/FLAM SINE Alu -228 84 5 1743 181 53 0 chr13 50280631 50280969 -69463929 - L1MB4 LINE L1 -12 6168 5813 1042 167 0 0 chr13 50280969 50281131 -69463767 - AluSg/x SINE Alu -23 289 128 953 251 164 25 chr13 50282031 50282557 -69462341 + L1MC4a LINE L1 5670 6268 -1540 2303 240 28 35 chr13 50282890 50283996 -69460902 + L1MCc LINE L1 826 1945 -4887 791 245 46 42 chr13 50284345 50284582 -69460316 - L1ME2 LINE L1 -44 6120 5883 241 159 0 23 chr13 50285776 50285820 -69459078 - MER116 DNA Mariner 0 80 38 446 284 37 25 chr13 50285854 50286016 -69458882 - MIR SINE MIR -53 209 46 850 201 24 76 chr13 50287223 50287472 -69457426 + L1M4 LINE L1 3784 4019 -2127 345 248 137 19 chr13 50287695 50287856 -69457042 + L1MC5 LINE L1 7033 7212 -749 788 258 134 42 chr13 50287974 50288054 -69456844 + L1MC5 LINE L1 7249 7320 -641 1101 156 65 15 chr13 50288054 50288253 -69456645 - MER3 DNA MER1_type 0 209 1 788 258 134 42 chr13 50288253 50288718 -69456180 + L1MC5 LINE L1 7320 7844 -117 24 32 0 0 chr13 50288771 50288802 -69456096 + AT_rich Low_complexity Low_complexity 1 31 0 28 79 0 0 chr13 50288904 50288967 -69455931 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr13 50289073 50289094 -69455804 + AT_rich Low_complexity Low_complexity 1 21 0 438 258 17 17 chr13 50289394 50289514 -69455384 + MER94 DNA DNA 14 133 -1 247 239 65 43 chr13 50289932 50290024 -69454874 - MER5B DNA MER1_type -84 94 1 186 342 134 7 chr13 50291263 50291412 -69453486 - L2 LINE L2 -173 3099 2932 2192 186 72 33 chr13 50292108 50292418 -69452480 - MLT1D LTR MaLR -3 502 165 2406 80 3 3 chr13 50292418 50292718 -69452180 - AluSp SINE Alu -13 300 1 2192 186 72 33 chr13 50292718 50292890 -69452008 - MLT1D LTR MaLR -340 165 1 13663 48 74 5 chr13 50292966 50294715 -69450183 + L1P LINE L1 3 1873 -4273 499 226 58 13 chr13 50294728 50294883 -69450015 - L1MC4 LINE L1 -273 7769 7608 6591 74 21 29 chr13 50294889 50296689 -69448209 - SVA Other Other -551 1385 4 234 0 0 0 chr13 50298139 50298165 -69446733 + (TA)n Simple_repeat Simple_repeat 2 27 0 1672 112 123 4 chr13 50298722 50298979 -69445919 + AluSx SINE Alu 1 293 -9 2460 77 3 3 chr13 50298979 50299290 -69445608 + AluY SINE Alu 1 311 0 1672 112 123 4 chr13 50299290 50299301 -69445597 + AluSx SINE Alu 293 301 -1 214 158 0 18 chr13 50299403 50299460 -69445438 + (TG)n Simple_repeat Simple_repeat 1 56 0 274 325 171 23 chr13 50299571 50300127 -69444771 + L2 LINE L2 1861 2498 -816 182 264 113 85 chr13 50300479 50300585 -69444313 + L2 LINE L2 2983 3091 -181 492 301 61 9 chr13 50300617 50300846 -69444052 + MIR SINE MIR 8 248 -14 1151 219 0 18 chr13 50300938 50301166 -69443732 - MER58A DNA MER1_type 0 224 1 645 236 25 64 chr13 50301590 50301793 -69443105 - L1ME2 LINE L1 -7 6157 5963 677 296 66 34 chr13 50301916 50302681 -69442217 - L1MCc LINE L1 -4910 1513 1129 527 294 65 24 chr13 50303065 50303431 -69441467 - L1MCc LINE L1 -5977 446 31 336 102 0 0 chr13 50303875 50303924 -69440974 + (CA)n Simple_repeat Simple_repeat 1 49 0 234 346 52 7 chr13 50305983 50306119 -69438779 - L2 LINE L2 -6 3266 3125 1112 236 99 40 chr13 50306296 50306772 -69438126 + L2 LINE L2 2625 3071 -242 219 69 0 0 chr13 50306772 50306801 -69438097 + (TA)n Simple_repeat Simple_repeat 1 29 0 2197 116 3 3 chr13 50306801 50307103 -69437795 - AluSx SINE Alu -10 302 1 1112 236 99 40 chr13 50307103 50307272 -69437626 + L2 LINE L2 3070 3313 0 271 344 182 21 chr13 50307968 50308160 -69436738 + MIR SINE MIR 20 242 -20 186 294 15 15 chr13 50308254 50308322 -69436576 + L2 LINE L2 3241 3308 -5 201 39 0 0 chr13 50308586 50308612 -69436286 + (TTA)n Simple_repeat Simple_repeat 1 26 0 363 321 8 8 chr13 50308615 50308749 -69436149 - MIR SINE MIR -125 137 4 185 348 67 18 chr13 50309304 50309468 -69435430 + L2 LINE L2 1868 2039 -1275 410 195 125 0 chr13 50309671 50309799 -69435099 - L1ME4a LINE L1 0 6121 5978 458 312 81 29 chr13 50309800 50310185 -69434713 - L1ME4a LINE L1 -188 5933 5529 239 307 228 8 chr13 50312560 50312687 -69432211 - MIR3 SINE MIR -33 175 21 715 218 29 113 chr13 50313918 50314157 -69430741 + MER20 DNA MER1_type 1 219 0 563 114 114 0 chr13 50314180 50314268 -69430630 - 5S rRNA rRNA -23 98 1 1537 99 36 5 chr13 50314268 50314491 -69430407 + L1PA8 LINE L1 5919 6148 -24 223 303 0 0 chr13 50314737 50314803 -69430095 - MIR SINE MIR -136 126 61 182 276 0 0 chr13 50314935 50314993 -69429905 + MIR SINE MIR 97 154 -108 5892 193 67 84 chr13 50318529 50319449 -69425449 + L1MC4 LINE L1 5888 6822 -1220 384 77 0 0 chr13 50319449 50319501 -69425397 + (TG)n Simple_repeat Simple_repeat 1 52 0 5892 193 67 84 chr13 50319501 50320772 -69424126 + L1MC4 LINE L1 6822 8042 0 696 201 32 78 chr13 50320895 50321179 -69423719 + L1MC5 LINE L1 7660 7930 -31 2038 107 3 17 chr13 50321235 50321526 -69423372 - AluJb SINE Alu -2 310 24 185 309 25 37 chr13 50322036 50322117 -69422781 - MIR SINE MIR -162 100 21 1142 233 108 17 chr13 50323297 50323600 -69421298 - MLT1A2 LTR MaLR -4 370 51 1106 192 9 49 chr13 50323687 50323911 -69420987 - MER58A DNA MER1_type -8 216 2 2162 93 0 81 chr13 50323933 50324254 -69420644 - AluSx SINE Alu -17 295 1 189 0 0 0 chr13 50324259 50324280 -69420618 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1473 80 25 5 chr13 50324282 50324483 -69420415 - L1PA10 LINE L1 -16 6152 5948 424 231 154 35 chr13 50324606 50324775 -69420123 - MIR SINE MIR -8 254 66 1596 184 118 19 chr13 50327173 50327587 -69417311 + MLT1C LTR MaLR 6 460 -7 404 171 0 11 chr13 50327593 50327681 -69417217 + GA-rich Low_complexity Low_complexity 1 87 0 312 291 122 23 chr13 50327681 50327853 -69417045 - MIR SINE MIR -10 252 64 276 77 0 0 chr13 50327856 50327895 -69417003 + (T)n Simple_repeat Simple_repeat 1 39 0 1271 216 134 26 chr13 50328371 50328759 -69416139 + MLT1C LTR MaLR 6 435 -32 2898 231 41 3 chr13 50328759 50329388 -69415510 - MER82 DNA MER2_type 0 653 1 251 394 62 13 chr13 50329664 50329890 -69415008 + L2 LINE L2 3018 3254 -18 253 250 279 0 chr13 50330140 50330280 -69414618 - L2 LINE L2 -252 3061 2883 367 320 20 14 chr13 50330349 50330496 -69414402 - L3 LINE CR1 -50 1527 1380 213 281 49 12 chr13 50330589 50330671 -69414227 - MIR SINE MIR -105 157 73 217 306 35 12 chr13 50330826 50330911 -69413987 - L3 LINE CR1 -242 1335 1249 224 237 8 93 chr13 50330947 50331065 -69413833 + MIR SINE MIR 107 214 -48 352 277 52 32 chr13 50331124 50331279 -69413619 + MIR3 SINE MIR 3 160 -48 21 0 0 0 chr13 50332065 50332086 -69412812 + AT_rich Low_complexity Low_complexity 1 21 0 249 281 0 0 chr13 50333350 50333407 -69411491 + L2 LINE L2 3244 3300 -13 348 276 60 37 chr13 50333445 50333579 -69411319 + MIR3 SINE MIR 27 163 -45 4634 196 79 52 chr13 50333688 50334994 -69409904 + Charlie1a DNA MER1_type 1 1341 -114 537 148 96 17 chr13 50335101 50335216 -69409682 + Charlie1a DNA MER1_type 1332 1455 0 986 210 126 47 chr13 50335647 50336028 -69408870 + MER69 DNA AcHobo 2115 2525 -1 2218 123 0 3 chr13 50336045 50336354 -69408544 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr13 50336442 50336463 -69408435 + AT_rich Low_complexity Low_complexity 1 21 0 194 139 0 28 chr13 50336539 50336575 -69408323 + MIR3 SINE MIR 153 187 -21 2198 96 7 10 chr13 50336919 50337220 -69407678 - AluSg SINE Alu -10 300 1 261 221 32 32 chr13 50337616 50337711 -69407187 + (TTCA)n Simple_repeat Simple_repeat 1 95 0 1510 179 4 4 chr13 50337949 50338206 -69406692 + AluJo SINE Alu 11 267 -45 190 284 30 0 chr13 50338506 50338573 -69406325 - MIR SINE MIR -95 167 99 * 582 351 130 10 chr13 50338554 50339075 -69405823 + L2 LINE L2 2732 3313 0 209 309 48 12 chr13 50339066 50339150 -69405748 - MIR SINE MIR -156 106 20 * 1893 142 10 42 chr13 50339225 50339534 -69405364 + AluJo SINE Alu 1 299 -13 1309 91 5 61 chr13 50340105 50340303 -69404595 - AluSq SINE Alu -126 187 1 2832 234 61 25 chr13 50340304 50341091 -69403807 - L1ME2 LINE L1 -191 5973 5216 1846 182 30 45 chr13 50341091 50341487 -69403411 - MLT1B LTR MaLR 0 390 1 2832 234 61 25 chr13 50341487 50342276 -69402622 - L1ME2 LINE L1 -948 5216 4334 1270 256 82 8 chr13 50342898 50343265 -69401633 - MLT1I LTR MaLR -4 405 12 200 273 52 91 chr13 50343286 50343440 -69401458 + L2 LINE L2 3166 3313 0 2488 195 108 45 chr13 50343458 50344141 -69400757 + LTR8A LTR ERV1 2 727 0 198 274 16 0 chr13 50345416 50345478 -69399420 - L2 LINE L2 -1 3312 3250 964 299 22 38 chr13 50347713 50348165 -69396733 + L2 LINE L2 1949 2393 -921 2368 87 0 0 chr13 50348230 50348517 -69396381 - AluSc SINE Alu -22 287 1 673 156 9 0 chr13 50348517 50348626 -69396272 - MLT1B LTR MaLR -280 110 1 373 248 170 13 chr13 50348725 50348878 -69396020 + MIR SINE MIR 65 241 -21 1422 146 5 0 chr13 50349190 50349402 -69395496 + AluSg/x SINE Alu 99 311 -1 1720 194 3 7 chr13 50349945 50350255 -69394643 + AluJo SINE Alu 1 309 -3 1891 151 7 13 chr13 50350412 50350717 -69394181 + AluJb SINE Alu 1 303 -9 530 267 79 20 chr13 50350813 50351015 -69393883 - MIR SINE MIR -47 215 2 461 169 0 0 chr13 50351263 50351340 -69393558 + L1MB3 LINE L1 5857 5933 -247 4117 88 18 0 chr13 50351340 50351884 -69393014 + MER41A LTR ERV1 1 554 0 2746 108 11 3 chr13 50351884 50352265 -69392633 + MER41A-int LTR ERV1 1 384 -5562 3505 158 23 7 chr13 50352265 50352836 -69392062 + LTR22 LTR ERVK 1 580 0 953 155 0 0 chr13 50352870 50353012 -69391886 + MER41A-int LTR ERV1 379 520 -5426 865 168 37 6 chr13 50352999 50353160 -69391738 + MER41A-int LTR ERV1 473 638 -5308 * 6923 138 84 58 chr13 50353140 50354608 -69390290 + MER41A-int LTR ERV1 3226 4731 -3085 * 9412 63 50 40 chr13 50354590 50355690 -69389208 + MER41A-int LTR ERV1 4574 5691 -255 2165 91 35 0 chr13 50355690 50355977 -69388921 + AluSc SINE Alu 1 297 -12 9412 63 50 40 chr13 50355977 50356228 -69388670 + MER41A-int LTR ERV1 5691 5938 -8 4186 97 0 4 chr13 50356232 50356788 -69388110 + MER41A LTR ERV1 1 554 0 1280 160 29 8 chr13 50356788 50357032 -69387866 + L1MB3 LINE L1 5933 6181 -2 45 0 0 0 chr13 50357063 50357108 -69387790 + AT_rich Low_complexity Low_complexity 1 45 0 340 256 151 10 chr13 50357699 50357898 -69387000 + MER110A LTR ERV1 242 468 0 1765 164 9 46 chr13 50358888 50359212 -69385686 + AluJo SINE Alu 1 312 0 500 259 59 12 chr13 50359388 50359558 -69385340 - LTR33A LTR ERVL 0 523 346 189 298 0 0 chr13 50360134 50360181 -69384717 + MER5A DNA MER1_type 141 187 -2 200 314 196 0 chr13 50360355 50360457 -69384441 - L2 LINE L2 -2 3270 3149 195 69 0 0 chr13 50360591 50360620 -69384278 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 254 36 0 chr13 50361153 50361208 -69383690 + polypyrimidine Low_complexity Low_complexity 2 58 0 281 233 111 0 chr13 50361233 50361323 -69383575 - L1ME4a LINE L1 -2 6119 6020 3859 149 32 53 chr13 50361875 50362564 -69382334 + L1MB1 LINE L1 5279 5940 -228 2124 135 10 0 chr13 50362564 50362861 -69382037 + AluSx SINE Alu 1 300 -12 3859 149 32 53 chr13 50362861 50362963 -69381935 + L1MB1 LINE L1 5940 6043 -125 4052 106 2 7 chr13 50362963 50363518 -69381380 + MER41A LTR ERV1 1 552 -2 528 101 101 0 chr13 50363522 50363611 -69381287 + MER4A LTR ERV1 1 98 -566 1733 143 162 73 chr13 50363611 50363982 -69380916 + MER4A LTR ERV1 261 664 0 2934 104 144 22 chr13 50363985 50364521 -69380377 + MER4A-int LTR ERV1 1 601 -5997 944 112 158 112 chr13 50364507 50364625 -69380273 + MER4A-int LTR ERV1 503 614 -4401 * 408 71 0 0 chr13 50364625 50364681 -69380217 + (TG)n Simple_repeat Simple_repeat 2 57 0 944 112 158 112 chr13 50364681 50364902 -69379996 + MER4A-int LTR ERV1 614 779 -4236 * 16656 106 85 54 chr13 50364897 50365047 -69379851 + MER4A-int LTR ERV1 1159 1303 -5295 2300 107 0 0 chr13 50365047 50365336 -69379562 + AluSg SINE Alu 1 289 -21 16656 106 85 54 chr13 50365336 50369083 -69375815 + MER4A-int LTR ERV1 1303 6598 0 538 122 89 0 chr13 50369084 50369174 -69375724 + MER4A LTR ERV1 1 98 -566 1674 152 165 70 chr13 50369174 50369543 -69375355 + MER4A LTR ERV1 261 664 0 661 157 33 0 chr13 50369548 50369669 -69375229 + L1MB1 LINE L1 6043 6167 -1 35 24 0 0 chr13 50369670 50369712 -69375186 + AT_rich Low_complexity Low_complexity 1 42 0 1925 123 3 59 chr13 50369933 50370299 -69374599 - MER4A LTR ERV1 0 664 261 649 131 0 10 chr13 50370299 50370398 -69374500 - MER4A LTR ERV1 -566 98 1 2296 93 3 0 chr13 50370977 50371267 -69373631 + AluSx SINE Alu 1 291 -21 468 286 23 41 chr13 50371291 50371462 -69373436 + MER5B DNA MER1_type 5 172 -6 1643 188 108 78 chr13 50374596 50374919 -69369979 + MLT1D LTR MaLR 1 346 -159 207 0 0 0 chr13 50374919 50374942 -69369956 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1643 188 108 78 chr13 50374942 50375108 -69369790 + MLT1D LTR MaLR 346 505 0 284 267 109 89 chr13 50375108 50375355 -69369543 - L2 LINE L2 -27 3245 2994 434 171 288 14 chr13 50375458 50375604 -69369294 + MER5A DNA MER1_type 4 189 0 1346 186 0 23 chr13 50375879 50376142 -69368756 - AluJo SINE Alu -16 296 40 923 242 127 29 chr13 50376519 50376833 -69368065 + MER45C DNA AcHobo 1 345 -608 478 266 0 9 chr13 50376858 50376967 -69367931 + MER45C DNA AcHobo 697 804 -149 210 91 0 0 chr13 50376971 50377004 -69367894 + (CAGAGA)n Simple_repeat Simple_repeat 5 37 0 3022 140 39 51 chr13 50377039 50377157 -69367741 - L1MB2 LINE L1 -7 6164 6046 1839 157 30 7 chr13 50377157 50377462 -69367436 - AluJo SINE Alu 0 312 1 3022 140 39 51 chr13 50377462 50377914 -69366984 - L1MB2 LINE L1 -125 6046 5601 286 320 0 0 chr13 50378231 50378309 -69366589 - L2 LINE L2 -5 3308 3231 21 0 0 0 chr13 50378691 50378712 -69366186 + AT_rich Low_complexity Low_complexity 1 21 0 185 327 0 19 chr13 50378890 50378942 -69365956 - L2 LINE L2 -190 3082 3032 767 255 78 33 chr13 50379842 50380085 -69364813 - MIR SINE MIR -5 257 4 215 308 170 38 chr13 50380085 50380237 -69364661 + MIR SINE MIR 45 217 -45 622 193 118 57 chr13 50380537 50380681 -69364217 - L1ME3 LINE L1 -4 6158 5993 2134 113 0 0 chr13 50380681 50381005 -69363893 + AluSx SINE Alu 1 324 0 622 193 118 57 chr13 50381005 50381087 -69363811 - L1ME3 LINE L1 -169 5993 5917 508 276 35 14 chr13 50381633 50381778 -69363120 - MIR SINE MIR -111 151 4 2782 87 6 6 chr13 50383335 50383690 -69361208 - THE1A LTR MaLR 0 355 1 2006 96 19 4 chr13 50383770 50384061 -69360837 + AluSq SINE Alu 11 305 0 574 290 39 23 chr13 50384242 50384501 -69360397 + L1M4 LINE L1 3935 4197 -1949 1794 179 43 3 chr13 50384890 50385215 -69359683 + MER74A LTR ERVL 34 371 -187 257 239 113 31 chr13 50386002 50386172 -69358726 - L1ME LINE L1 -5323 1311 1043 2595 177 22 0 chr13 50386898 50387345 -69357553 - LTR32 LTR ERVL 0 471 15 492 258 16 16 chr13 50387759 50387887 -69357011 + L2 LINE L2 3142 3269 -3 1812 164 11 3 chr13 50387909 50388195 -69356703 + AluJo SINE Alu 1 288 -24 642 271 203 25 chr13 50388247 50388568 -69356330 - L2 LINE L2 -765 2549 2172 488 301 154 4 chr13 50388657 50388983 -69355915 + LTR33 LTR ERVL 114 521 0 813 252 73 28 chr13 50389005 50389322 -69355576 - L2 LINE L2 -1168 2146 1816 326 331 33 16 chr13 50389441 50389562 -69355336 - MIR SINE MIR 0 262 140 298 317 41 16 chr13 50389565 50389688 -69355210 - L2 LINE L2 0 3313 3188 3439 16 5 3 chr13 50389757 50390134 -69354764 + L1PA2 LINE L1 5778 6155 0 2274 113 0 0 chr13 50390331 50390632 -69354266 + AluSx SINE Alu 6 306 -6 236 193 18 0 chr13 50390756 50390813 -69354085 + (CA)n Simple_repeat Simple_repeat 1 58 0 550 268 26 103 chr13 50391845 50392062 -69352836 + MLT1J LTR MaLR 1 243 -268 2363 143 114 5 chr13 50392211 50392597 -69352301 + MSTA LTR MaLR 1 428 0 1809 139 3 7 chr13 50392597 50392884 -69352014 + MSTA-int LTR MaLR 1 286 -1365 2906 169 24 12 chr13 50392897 50393395 -69351503 + MSTA-int LTR MaLR 435 938 -642 3693 53 5 7 chr13 50393395 50393844 -69351054 + LTR7 LTR ERV1 1 448 -2 20507 88 26 16 chr13 50393846 50396814 -69348084 + HERVH LTR ERV1 1 2995 -4718 943 140 7 0 chr13 50396793 50396943 -69347955 + HERVH LTR ERV1 3140 3290 -4423 * 967 145 0 0 chr13 50396942 50397087 -69347811 + HERVH LTR ERV1 3500 3644 -4069 * 2289 160 73 0 chr13 50397086 50397468 -69347430 + HERVH LTR ERV1 4740 5149 -2564 1365 119 20 0 chr13 50397505 50397706 -69347192 + HERVH LTR ERV1 5615 5819 -1894 * 2552 81 45 16 chr13 50397704 50398085 -69346813 + HERVH LTR ERV1 7322 7713 0 3744 53 0 7 chr13 50398085 50398536 -69346362 + LTR7 LTR ERV1 1 448 -2 4085 137 8 20 chr13 50398538 50399193 -69345705 + MSTA-int LTR MaLR 934 1580 0 358 252 9 54 chr13 50399231 50399271 -69345627 + MLT1J LTR MaLR 376 416 -95 2428 125 122 8 chr13 50399271 50399655 -69345243 + MSTA LTR MaLR 1 428 0 358 252 9 54 chr13 50399655 50399725 -69345173 + MLT1J LTR MaLR 416 481 -30 202 300 173 55 chr13 50400642 50400752 -69344146 + MIR3 SINE MIR 14 136 -72 1092 77 0 0 chr13 50401342 50401472 -69343426 + AluSp SINE Alu 1 130 -183 1375 109 0 0 chr13 50401554 50401738 -69343160 + AluSp SINE Alu 130 313 0 344 329 35 21 chr13 50402699 50402842 -69342056 + MIR SINE MIR 20 164 -98 232 287 193 7 chr13 50403040 50403190 -69341708 + MIR SINE MIR 84 261 -1 1400 196 104 13 chr13 50403210 50403526 -69341372 + MER2 DNA MER2_type 1 345 0 220 224 0 15 chr13 50404754 50404821 -69340077 + (TA)n Simple_repeat Simple_repeat 1 66 0 292 325 80 7 chr13 50405435 50405586 -69339312 + LTR16C LTR ERVL 298 459 -32 357 297 7 19 chr13 50406493 50406648 -69338250 + L1MC5 LINE L1 5301 5453 -2355 550 331 129 18 chr13 50407343 50407724 -69337174 + L2 LINE L2 1849 2271 -1043 23 33 0 0 chr13 50408627 50408657 -69336241 + AT_rich Low_complexity Low_complexity 1 30 0 644 304 67 44 chr13 50409239 50409824 -69335074 + HAL1b LINE L1 61 658 -690 2217 244 80 46 chr13 50410102 50411098 -69333800 + L1MC5 LINE L1 6476 7522 -439 313 223 10 68 chr13 50411217 50411320 -69333578 + L1ME3A LINE L1 5975 6071 -99 676 321 160 8 chr13 50411516 50411986 -69332912 + L3 LINE CR1 844 1384 -193 2205 119 7 0 chr13 50411986 50412281 -69332617 + AluSx SINE Alu 1 297 -15 2426 67 0 10 chr13 50412352 50412650 -69332248 + AluY SINE Alu 1 295 -16 667 284 125 58 chr13 50412906 50413385 -69331513 + MLT1K LTR MaLR 76 586 -2 324 0 0 0 chr13 50414002 50414038 -69330860 + (CA)n Simple_repeat Simple_repeat 2 37 0 413 237 0 0 chr13 50414486 50414562 -69330336 + MER5A DNA MER1_type 31 106 -83 2177 169 22 37 chr13 50415315 50415724 -69329174 - MER57A LTR ERV1 0 403 1 589 260 103 5 chr13 50416631 50416835 -69328063 + MIR SINE MIR 35 258 -4 272 301 12 0 chr13 50417578 50417661 -69327237 + L2 LINE L2 2239 2322 -992 317 93 93 0 chr13 50417661 50417715 -69327183 - HSMAR1 DNA Mariner 0 1287 1229 462 234 199 0 chr13 50417725 50417896 -69327002 + L2 LINE L2 2337 2541 -773 3998 105 15 11 chr13 50418265 50418789 -69326109 - MER1A DNA MER1_type -1 526 1 707 293 63 52 chr13 50418790 50419312 -69325586 + L1ME3A LINE L1 531 1058 -5061 1393 266 46 57 chr13 50419610 50420154 -69324744 + L1ME3A LINE L1 3778 4315 -1814 794 240 6 6 chr13 50420154 50420337 -69324561 + L1MC4 LINE L1 6878 7060 -982 612 237 132 0 chr13 50420528 50420707 -69324191 - LTR41 LTR ERVL -556 239 9 648 293 58 17 chr13 50421338 50421821 -69323077 + L1ME3A LINE L1 4868 5407 -738 338 125 0 0 chr13 50421821 50421869 -69323029 - Charlie3 DNA MER1_type -2442 268 221 944 214 145 126 chr13 50421887 50422603 -69322295 + L1ME3A LINE L1 5401 6130 -23 2146 89 0 38 chr13 50422647 50422970 -69321928 + AluSp SINE Alu 2 313 0 209 179 0 54 chr13 50423006 50423062 -69321836 + MIR SINE MIR 90 142 -120 2631 109 11 92 chr13 50423589 50424055 -69320843 - LTR12 LTR ERV1 -234 480 53 232 269 0 0 chr13 50424055 50424107 -69320791 - LTR30 LTR ERV1 -670 52 1 5595 108 8 4 chr13 50424107 50424901 -69319997 - HERV9 LTR ERV1 0 8399 7603 2290 177 120 62 chr13 50424879 50425620 -69319278 - Harlequin LTR ERV1 -5156 1740 957 * 22 0 0 0 chr13 50425871 50425893 -69319005 + AT_rich Low_complexity Low_complexity 1 22 0 243 271 37 28 chr13 50426183 50426290 -69318608 + MIR3 SINE MIR 93 200 -8 517 333 89 22 chr13 50426752 50427244 -69317654 + L2 LINE L2 1738 2262 -1052 394 274 159 44 chr13 50427263 50427646 -69317252 + L2 LINE L2 2887 3313 0 1337 131 11 24 chr13 50427772 50427974 -69316924 + MSTB1 LTR MaLR 1 204 -222 2356 95 7 0 chr13 50427974 50428269 -69316629 + AluSq SINE Alu 1 297 -16 1337 131 11 24 chr13 50428269 50428421 -69316477 + MSTB1 LTR MaLR 204 426 0 1217 249 103 46 chr13 50428495 50429089 -69315809 + MLT1G3 LTR MaLR 3 595 0 312 203 163 2 chr13 50429223 50429372 -69315526 - MER63A DNA MER1_type 0 210 1 2403 88 0 7 chr13 50429893 50430201 -69314697 + AluSq SINE Alu 1 306 -7 233 262 71 50 chr13 50430584 50430725 -69314173 + L1MC/D LINE L1 5746 5889 -1919 1952 182 46 26 chr13 50431016 50431433 -69313465 + MSTC LTR MaLR 4 428 0 373 238 0 36 chr13 50431564 50431648 -69313250 + L2 LINE L2 3213 3293 -20 * 606 294 97 0 chr13 50431634 50431872 -69313026 - L2 LINE L2 -141 3172 2912 606 275 38 9 chr13 50433314 50433525 -69311373 + MIR SINE MIR 30 246 -16 1359 124 10 0 chr13 50434033 50434227 -69310671 - AluSg/x SINE Alu -10 300 105 1317 307 69 32 chr13 50434815 50435075 -69309823 - L2 LINE L2 -559 2755 2506 1950 152 0 0 chr13 50435075 50435365 -69309533 + AluSx SINE Alu 1 290 -22 1317 307 69 32 chr13 50435365 50435882 -69309016 - L2 LINE L2 -808 2506 1949 187 302 0 0 chr13 50437339 50437392 -69307506 - L2 LINE L2 -16 3256 3204 620 342 95 41 chr13 50437410 50438615 -69306283 - L2 LINE L2 -27 3245 1968 305 321 167 4 chr13 50438637 50438883 -69306015 - L2 LINE L2 -1494 1820 1535 232 276 71 61 chr13 50439375 50439473 -69305425 + L2 LINE L2 3182 3280 -33 1846 183 0 6 chr13 50439592 50439903 -69304995 - AluJo SINE Alu -3 309 1 1438 142 5 0 chr13 50440446 50440658 -69304240 - AluSg/x SINE Alu -1 311 99 357 255 170 13 chr13 50440970 50441123 -69303775 - MIR SINE MIR -21 241 65 1798 181 25 60 chr13 50441222 50441331 -69303567 + MLT1B LTR MaLR 1 112 -278 2291 90 0 0 chr13 50441331 50441713 -69303185 + AluSc SINE Alu 1 382 0 1798 181 25 60 chr13 50441713 50442001 -69302897 + MLT1B LTR MaLR 112 385 -5 265 311 87 0 chr13 50443202 50443305 -69301593 + L2 LINE L2 3160 3271 -1 225 316 13 0 chr13 50443526 50443605 -69301293 + MIR SINE MIR 162 241 -21 1799 150 49 0 chr13 50444007 50444293 -69300605 + AluJb SINE Alu 1 300 -12 231 363 71 12 chr13 50444675 50444843 -69300055 + MIR SINE MIR 15 192 -70 244 282 28 33 chr13 50445581 50445795 -69299103 + (CACG)n Simple_repeat Simple_repeat 1 212 0 221 211 0 40 chr13 50445808 50445884 -69299014 + G-rich Low_complexity Low_complexity 5 77 0 33 0 0 0 chr13 50446103 50446136 -69298762 + GC_rich Low_complexity Low_complexity 1 33 0 2305 88 0 7 chr13 50447716 50448011 -69296887 + AluSp SINE Alu 1 293 -20 245 294 7 55 chr13 50448420 50448566 -69296332 + L2 LINE L2 2918 3056 -216 385 362 16 5 chr13 50448682 50448867 -69296031 - L2 LINE L2 -932 2382 2196 328 261 18 27 chr13 50448887 50448998 -69295900 - MIR SINE MIR -2 260 151 485 310 154 19 chr13 50449005 50449473 -69295425 - L2 LINE L2 -1178 2136 1606 1732 164 16 31 chr13 50449511 50449828 -69295070 - AluJo SINE Alu 0 312 1 870 196 0 21 chr13 50450334 50450528 -69294370 + MIR SINE MIR 36 225 -37 188 152 0 0 chr13 50450767 50450800 -69294098 - MIR SINE MIR -66 142 110 219 132 57 19 chr13 50451722 50451775 -69293123 + (TATG)n Simple_repeat Simple_repeat 4 58 0 202 291 76 0 chr13 50452779 50452858 -69292040 - L2 LINE L2 -582 2732 2648 23 33 0 0 chr13 50453590 50453620 -69291278 + AT_rich Low_complexity Low_complexity 1 30 0 205 273 0 0 chr13 50455456 50455511 -69289387 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 807 251 115 96 chr13 50456601 50457080 -69287818 - MLT1J LTR MaLR 0 511 24 549 254 36 0 chr13 50457996 50458134 -69286764 + MIR3 SINE MIR 39 181 -27 201 132 53 0 chr13 50458184 50458222 -69286676 + GA-rich Low_complexity Low_complexity 2 41 0 388 133 19 0 chr13 50461774 50461852 -69283046 + MER5A DNA MER1_type 4 83 -106 1009 294 81 29 chr13 50462753 50463310 -69281588 - L1ME4a LINE L1 -18 6103 5518 185 230 380 10 chr13 50465005 50465105 -69279793 + MIR3 SINE MIR 20 156 -52 2220 119 0 7 chr13 50467055 50467365 -69277533 - AluSq SINE Alu -5 308 1 574 221 147 0 chr13 50467799 50467962 -69276936 + L2 LINE L2 3127 3313 0 1558 220 33 66 chr13 50468482 50469157 -69275741 - LTR9 LTR ERV1 0 612 1 325 222 17 60 chr13 50469265 50469382 -69275516 + MIR SINE MIR 150 261 -1 641 198 39 17 chr13 50470814 50471006 -69273892 + MIR SINE MIR 23 216 -46 351 310 65 25 chr13 50471652 50471852 -69273046 + L2 LINE L2 2285 2492 -822 518 266 248 45 chr13 50471944 50472384 -69272514 - MLT1H LTR MaLR 0 549 21 210 204 0 0 chr13 50472729 50472773 -69272125 + L2 LINE L2 3005 3048 -224 278 167 0 19 chr13 50473372 50473426 -69271472 + MER91B DNA MER1_type 2 54 -136 421 204 30 68 chr13 50478360 50478492 -69266406 - L1ME3A LINE L1 0 6170 6044 527 172 278 41 chr13 50478830 50478999 -69265899 - MER3 DNA MER1_type 0 209 1 357 337 64 16 chr13 50479815 50480002 -69264896 + L3b LINE CR1 1233 1428 -155 3635 147 34 8 chr13 50480206 50480845 -69264053 - L1MB3 LINE L1 -2 6181 5526 648 275 156 16 chr13 50481043 50481412 -69263486 + L2 LINE L2 2701 3139 -174 2611 149 19 18 chr13 50481422 50481879 -69263019 - MLT1C LTR MaLR -12 443 1 474 262 262 12 chr13 50482579 50483002 -69261896 + L2 LINE L2 2401 2929 -385 496 242 48 0 chr13 50483287 50483411 -69261487 + L2 LINE L2 3183 3312 -1 444 315 61 30 chr13 50484019 50484216 -69260682 - MIR SINE MIR -2 260 58 471 256 62 0 chr13 50484274 50484403 -69260495 - MER5A DNA MER1_type -2 187 51 1071 185 0 0 chr13 50488007 50488180 -69256718 + FAM SINE Alu 1 173 -2 385 227 103 0 chr13 50488247 50488344 -69256554 - L1MA4 LINE L1 -7 6293 6187 656 284 18 0 chr13 50488446 50488615 -69256283 + MIR SINE MIR 7 178 -84 592 204 45 19 chr13 50488780 50488937 -69255961 - MLT2F LTR ERVL -255 408 248 236 246 284 15 chr13 50488965 50489099 -69255799 - MLT2F LTR ERVL -489 174 5 207 286 22 44 chr13 50489102 50489193 -69255705 + MIR SINE MIR 174 262 0 220 225 0 0 chr13 50489193 50489233 -69255665 + (CAT)n Simple_repeat Simple_repeat 2 41 0 253 230 40 0 chr13 50489491 50489565 -69255333 + (TA)n Simple_repeat Simple_repeat 1 77 0 583 201 65 65 chr13 50490415 50490584 -69254314 - L2 LINE L2 -2 3311 3143 342 202 164 112 chr13 50491472 50491759 -69253139 + MLT1K LTR MaLR 274 575 -13 21 0 0 0 chr13 50493949 50493970 -69250928 + AT_rich Low_complexity Low_complexity 1 21 0 211 287 134 49 chr13 50495027 50495191 -69249707 + MER5A DNA MER1_type 12 189 0 436 200 0 0 chr13 50496026 50496096 -69248802 + MER58A DNA MER1_type 1 70 -37 252 0 0 0 chr13 50496096 50496124 -69248774 + (CA)n Simple_repeat Simple_repeat 2 29 0 243 324 49 10 chr13 50496135 50496237 -69248661 + HAL1 LINE L1 407 512 -1995 449 171 13 0 chr13 50496399 50496475 -69248423 - MER3 DNA MER1_type -132 77 1 24 32 0 0 chr13 50496582 50496613 -69248285 + AT_rich Low_complexity Low_complexity 1 31 0 1080 170 32 50 chr13 50496691 50496909 -69247989 + MER20 DNA MER1_type 1 214 -5 820 139 0 16 chr13 50496973 50497095 -69247803 - FLAM_A SINE Alu -16 126 7 1442 133 44 0 chr13 50497780 50498006 -69246892 - MER46A DNA MER2_type 0 236 1 192 222 67 0 chr13 50498270 50498315 -69246583 - L2 LINE L2 0 3313 3266 1551 195 0 16 chr13 50498620 50498927 -69245971 + AluJo SINE Alu 1 302 -10 1489 219 39 28 chr13 50498939 50499474 -69245424 + L1ME LINE L1 5108 5710 -460 220 359 45 41 chr13 50500340 50500520 -69244378 + L3b LINE CR1 1268 1446 -137 3192 123 12 18 chr13 50500520 50501026 -69243872 + L1PB4 LINE L1 5653 6155 -1 220 359 45 41 chr13 50501026 50501042 -69243856 + L3b LINE CR1 1446 1460 -123 2186 95 0 3 chr13 50501042 50501337 -69243561 + AluSc SINE Alu 1 294 -15 220 359 45 41 chr13 50501337 50501359 -69243539 + L3b LINE CR1 1460 1488 -95 359 210 50 20 chr13 50506199 50506299 -69238599 - MER117 DNA MER1_type -94 103 1 23 0 0 0 chr13 50506374 50506397 -69238501 + AT_rich Low_complexity Low_complexity 1 23 0 1162 189 18 40 chr13 50506415 50506571 -69238327 - MER58A DNA MER1_type -2197 223 72 2096 117 0 3 chr13 50506571 50506870 -69238028 - AluSg SINE Alu -12 298 1 1162 189 18 40 chr13 50506870 50506941 -69237957 - MER58A DNA MER1_type -2348 72 1 252 0 0 0 chr13 50507297 50507325 -69237573 + (A)n Simple_repeat Simple_repeat 1 28 0 216 111 56 0 chr13 50507726 50507762 -69237136 + L2 LINE L2 3268 3305 -8 1688 149 26 13 chr13 50508408 50508716 -69236182 - AluJo SINE Alu 0 312 1 2242 120 0 0 chr13 50509526 50509835 -69235063 + AluSx SINE Alu 1 309 -3 2338 59 3 13 chr13 50510433 50510739 -69234159 + AluY SINE Alu 1 303 -8 1123 87 0 17 chr13 50511973 50512207 -69232691 + (TCC)n Simple_repeat Simple_repeat 1 408 0 433 317 41 7 chr13 50512258 50512403 -69232495 + MIR SINE MIR 2 151 -111 2121 115 41 0 chr13 50512486 50512826 -69232072 + L1MA5A LINE L1 5944 6297 0 193 200 0 0 chr13 50512869 50512904 -69231994 + MIR SINE MIR 158 192 -70 761 281 99 50 chr13 50513009 50513065 -69231833 + L1ME4a LINE L1 5567 5619 -502 1720 159 0 30 chr13 50513065 50513361 -69231537 + AluJb SINE Alu 5 291 -21 761 281 99 50 chr13 50513361 50513827 -69231071 + L1ME4a LINE L1 5619 6115 -6 1612 156 60 7 chr13 50513846 50514128 -69230770 + AluJo SINE Alu 1 297 -15 349 208 26 0 chr13 50514313 50514390 -69230508 + MIR SINE MIR 90 168 -94 275 307 137 36 chr13 50514702 50515159 -69229739 + L2 LINE L2 2572 3081 -191 23 0 0 0 chr13 50515652 50515675 -69229223 + AT_rich Low_complexity Low_complexity 1 23 0 558 333 78 14 chr13 50516754 50517084 -69227814 + L2 LINE L2 2708 3054 -218 2218 103 3 0 chr13 50517143 50517445 -69227453 - AluSp SINE Alu -10 303 1 1914 119 48 3 chr13 50517447 50517741 -69227157 - AluSx SINE Alu -5 307 1 180 212 0 0 chr13 50518302 50518335 -69226563 + L3 LINE CR1 1219 1251 -326 548 258 90 0 chr13 50519244 50519422 -69225476 - MIR SINE MIR -3 259 66 188 316 44 35 chr13 50520696 50520810 -69224088 - MIR SINE MIR -98 164 50 663 336 37 4 chr13 50521902 50522143 -69222755 - MIR SINE MIR -13 249 1 371 265 53 15 chr13 50522167 50522299 -69222599 - LTR67 LTR ERVL -13 544 408 252 260 0 2 chr13 50522521 50522595 -69222303 - MLT1J LTR MaLR -332 153 44 21 0 0 0 chr13 50523339 50523360 -69221538 + AT_rich Low_complexity Low_complexity 1 21 0 234 298 12 24 chr13 50523563 50523647 -69221251 - LTR67 LTR ERVL -411 146 64 1943 105 40 0 chr13 50523922 50524198 -69220700 + AluSx SINE Alu 8 294 -18 307 289 69 29 chr13 50524362 50524535 -69220363 + MLT1J LTR MaLR 1 180 -331 3728 153 38 31 chr13 50524607 50524904 -69219994 - L1MC1 LINE L1 0 6333 6040 2263 164 36 7 chr13 50524904 50525318 -69219580 - MSTB LTR MaLR 0 426 1 3728 153 38 31 chr13 50525318 50525626 -69219272 - L1MC1 LINE L1 -293 6040 5720 2290 142 25 0 chr13 50525626 50525979 -69218919 - THE1B LTR MaLR -2 362 1 3728 153 38 31 chr13 50525979 50526083 -69218815 - L1MC1 LINE L1 -613 5720 5618 407 283 70 44 chr13 50526099 50526371 -69218527 + MLT1J LTR MaLR 231 509 -2 1861 158 0 44 chr13 50527418 50527734 -69217164 + AluJo SINE Alu 1 302 -10 395 281 52 30 chr13 50527843 50527978 -69216920 + MER63A DNA MER1_type 49 186 -24 4322 83 2 0 chr13 50528068 50528621 -69216277 + MER41A LTR ERV1 1 554 0 232 152 22 0 chr13 50528742 50528788 -69216110 + Tigger8 DNA MER2_type 210 256 -410 576 264 87 109 chr13 50529282 50529941 -69214957 + L1MC/D LINE L1 4036 4657 -1489 2551 66 0 0 chr13 50529941 50530243 -69214655 - AluY SINE Alu -9 302 1 576 264 87 109 chr13 50530243 50530796 -69214102 + L1MC/D LINE L1 4657 5221 -925 285 73 24 0 chr13 50530821 50530862 -69214036 - tRNA-Cys-TGC tRNA tRNA -32 43 2 238 279 139 0 chr13 50531017 50531103 -69213795 + MLT1E3 LTR MaLR 113 210 -414 291 250 12 12 chr13 50531157 50531237 -69213661 + L1MC/D LINE L1 5399 5478 -2330 231 61 0 0 chr13 50531245 50531278 -69213620 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1775 82 0 5 chr13 50531303 50531522 -69213376 + AluSq SINE Alu 12 229 -84 682 319 84 4 chr13 50531523 50531796 -69213102 + L1MC/D LINE L1 5472 5766 -2042 277 263 91 63 chr13 50532089 50532264 -69212634 + Tigger8 DNA MER2_type 482 661 -5 1388 260 64 25 chr13 50532406 50532890 -69212008 + MER69B DNA AcHobo 106 608 -618 2058 160 46 29 chr13 50532892 50533191 -69211707 + MER95 LTR ERV 13 322 -109 2303 115 0 0 chr13 50533191 50533486 -69211412 - AluSx SINE Alu -17 295 1 2058 160 46 29 chr13 50533486 50533598 -69211300 + MER95 LTR ERV 322 431 0 * 2255 207 39 47 chr13 50533598 50533935 -69210963 + MER69B DNA AcHobo 604 935 -1591 2015 126 36 13 chr13 50533935 50534237 -69210661 + AluSx SINE Alu 2 310 -2 2255 207 39 47 chr13 50534237 50534519 -69210379 + MER69B DNA AcHobo 935 1218 -8 2376 101 0 0 chr13 50535180 50535476 -69209422 + AluSx SINE Alu 1 296 -16 1245 301 38 7 chr13 50535585 50536003 -69208895 + LTR16B LTR ERVL 34 464 0 2339 106 0 6 chr13 50536167 50536479 -69208419 - AluSx SINE Alu -2 310 1 651 212 33 78 chr13 50537099 50537421 -69207477 - MLT1J1 LTR MaLR -69 377 75 543 216 36 9 chr13 50537433 50537544 -69207354 - MER81 DNA DNA 0 114 1 1360 148 5 9 chr13 50537769 50537992 -69206906 + L1PA15 LINE L1 5937 6158 -7 2649 51 0 16 chr13 50537992 50538307 -69206591 + AluY SINE Alu 1 310 -1 405 39 0 0 chr13 50538849 50538900 -69205998 + (CA)n Simple_repeat Simple_repeat 2 52 0 212 219 27 27 chr13 50539672 50539745 -69205153 + (CATA)n Simple_repeat Simple_repeat 2 74 0 2423 135 23 18 chr13 50540033 50540417 -69204481 + MLT1B LTR MaLR 1 386 -4 407 259 30 104 chr13 50541066 50541227 -69203671 + MIR SINE MIR 60 205 -57 1633 185 3 7 chr13 50541227 50541519 -69203379 + AluJo SINE Alu 11 301 -11 407 259 30 104 chr13 50541519 50541558 -69203340 + MIR SINE MIR 205 245 -17 2201 196 55 28 chr13 50542091 50542131 -69202767 - MLT2B1 LTR ERVL 0 520 483 572 0 15 0 chr13 50542131 50542199 -69202699 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 213 39 0 0 chr13 50542201 50542227 -69202671 + (CA)n Simple_repeat Simple_repeat 2 27 0 2201 196 55 28 chr13 50542227 50542689 -69202209 - MLT2B1 LTR ERVL -37 483 1 406 314 89 5 chr13 50542869 50543060 -69201838 - MIR SINE MIR -43 219 13 2258 167 44 15 chr13 50544221 50544675 -69200223 - MLT1C LTR MaLR 0 467 1 489 248 105 13 chr13 50544701 50544854 -69200044 - MER5B DNA MER1_type 0 178 12 189 178 0 0 chr13 50547251 50547296 -69197602 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 440 264 24 16 chr13 50547895 50548020 -69196878 + L2 LINE L2 3146 3271 -1 266 264 58 11 chr13 50548115 50548202 -69196696 + MIR SINE MIR 106 196 -66 344 266 48 16 chr13 50548269 50548393 -69196505 + L2 LINE L2 3123 3250 -22 1518 228 115 25 chr13 50549087 50549529 -69195369 + MLT2B1 LTR ERVL 1 534 -20 1997 147 0 10 chr13 50549922 50550247 -69194651 - AluSx SINE Alu 0 312 1 244 290 0 0 chr13 50550271 50550340 -69194558 + MIR SINE MIR 151 219 -43 2173 142 21 0 chr13 50550395 50550732 -69194166 + Tigger3(Golem) DNA MER2_type 1 344 -2685 594 210 48 8 chr13 50550732 50550856 -69194042 + FLAM_A SINE Alu 1 129 -13 5869 113 12 5 chr13 50550877 50551754 -69193144 + Tigger3b DNA MER2_type 345 1228 -3 342 239 0 46 chr13 50551827 50551936 -69192962 - MIR SINE MIR -102 160 57 360 264 45 36 chr13 50552592 50552702 -69192196 - L2 LINE L2 0 3313 3203 882 169 14 0 chr13 50553721 50553869 -69191029 - FRAM SINE Alu -11 165 16 216 0 0 0 chr13 50554814 50554838 -69190060 + (A)n Simple_repeat Simple_repeat 1 24 0 423 263 53 8 chr13 50555460 50555593 -69189305 + MER117 DNA MER1_type 1 139 -58 1068 143 90 97 chr13 50556176 50556455 -69188443 + MLT1A1 LTR MaLR 89 365 0 5836 150 48 4 chr13 50556776 50557869 -69187029 + L1MC2 LINE L1 5195 6334 -10 385 296 65 63 chr13 50557901 50558229 -69186669 + L1M4 LINE L1 4422 4753 -1393 2526 76 0 3 chr13 50558229 50558533 -69186365 + AluSx SINE Alu 1 303 -9 385 296 65 63 chr13 50558533 50558681 -69186217 + L1M4 LINE L1 4753 4899 -1247 * 404 310 113 16 chr13 50558671 50559287 -69185611 + L1P4 LINE L1 5123 5809 -357 2195 105 3 13 chr13 50559739 50560044 -69184854 + AluSx SINE Alu 5 306 -6 311 250 114 0 chr13 50560246 50560334 -69184564 - MIR SINE MIR -78 184 87 666 266 68 14 chr13 50561095 50561317 -69183581 + MIR SINE MIR 14 247 -15 229 282 36 55 chr13 50561851 50561961 -69182937 + L2 LINE L2 3193 3300 -13 879 130 0 0 chr13 50561961 50562107 -69182791 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 231 203 31 31 chr13 50564320 50564384 -69180514 - MIR SINE MIR -168 94 31 219 310 18 18 chr13 50564899 50565012 -69179886 + (CTCA)n Simple_repeat Simple_repeat 2 114 0 875 247 13 17 chr13 50565222 50565453 -69179445 - MIR SINE MIR -25 237 8 198 0 0 0 chr13 50565708 50565730 -69179168 + (A)n Simple_repeat Simple_repeat 1 22 0 451 326 6 6 chr13 50565841 50566016 -69178882 + MIR SINE MIR 64 238 -24 209 189 0 0 chr13 50568214 50568251 -69176647 + (CA)n Simple_repeat Simple_repeat 1 37 0 244 276 103 26 chr13 50568418 50568534 -69176364 + L1ME LINE L1 5636 5760 -361 683 243 122 9 chr13 50568598 50568812 -69176086 - MIR SINE MIR -3 259 22 2089 83 8 8 chr13 50568880 50569146 -69175752 + AluSg SINE Alu 39 304 -6 282 242 15 0 chr13 50569396 50569462 -69175436 + MIR SINE MIR 2 68 -194 458 249 168 6 chr13 50569514 50569687 -69175211 + MIR SINE MIR 48 248 -14 1286 180 66 23 chr13 50571108 50571364 -69173534 + Tigger7 DNA MER2_type 1 267 -466 563 194 0 0 chr13 50571362 50571460 -69173438 + Tigger7 DNA MER2_type 2389 2486 -1 * 241 261 29 0 chr13 50571974 50572043 -69172855 - MIR SINE MIR -179 83 13 25 0 0 0 chr13 50573799 50573824 -69171074 + AT_rich Low_complexity Low_complexity 1 25 0 6998 184 53 26 chr13 50574165 50576617 -69168281 - L1MB7 LINE L1 -19 6165 3659 281 264 96 96 chr13 50576630 50576797 -69168101 + MARNA DNA Mariner 143 309 -277 737 242 36 49 chr13 50576873 50577096 -69167802 - MIR SINE MIR -32 230 11 826 261 73 8 chr13 50577749 50577983 -69166915 + MIR SINE MIR 14 262 0 768 160 0 0 chr13 50578004 50578135 -69166763 + FLAM_A SINE Alu 1 131 -2 988 197 111 0 chr13 50580508 50580706 -69164192 + MER58A DNA MER1_type 1 220 -4 217 341 39 8 chr13 50580825 50580954 -69163944 + MIR SINE MIR 122 254 -8 196 368 47 36 chr13 50582130 50582323 -69162575 - L2 LINE L2 -2 3270 3076 324 269 60 15 chr13 50582470 50582604 -69162294 - MER103 DNA DNA -25 141 2 250 294 178 43 chr13 50583832 50583995 -69160903 + MIR3 SINE MIR 3 187 -21 22 56 0 0 chr13 50584559 50584595 -69160303 + AT_rich Low_complexity Low_complexity 1 36 0 250 289 211 18 chr13 50587406 50587520 -69157378 + L3b LINE CR1 1347 1482 -101 210 162 0 0 chr13 50589627 50589664 -69155234 + A-rich Low_complexity Low_complexity 1 37 0 1661 187 30 18 chr13 50590543 50590880 -69154018 + MER2 DNA MER2_type 1 341 -3 277 277 12 12 chr13 50592097 50592180 -69152718 - MIR SINE MIR -33 229 147 376 357 126 27 chr13 50593681 50593944 -69150954 + L2 LINE L2 317 605 -2709 785 187 7 7 chr13 50593994 50594149 -69150749 - LTR32 LTR ERVL 0 471 317 269 83 0 0 chr13 50594156 50594192 -69150706 - LTR32 LTR ERVL -119 352 317 1960 151 21 18 chr13 50594192 50594530 -69150368 - LTR32 LTR ERVL -119 352 14 413 240 213 7 chr13 50594578 50594728 -69150170 + MER5A DNA MER1_type 9 189 0 1026 336 133 28 chr13 50594859 50596179 -69148719 + L2 LINE L2 884 2342 -972 1002 201 65 99 chr13 50596385 50596878 -69148020 - L1MC5 LINE L1 -307 7654 7179 376 335 78 37 chr13 50596878 50597096 -69147802 + L2 LINE L2 2639 2865 -449 28 0 0 0 chr13 50598479 50598507 -69146391 + AT_rich Low_complexity Low_complexity 1 28 0 2136 97 10 13 chr13 50598598 50598898 -69146000 + AluSx SINE Alu 1 299 -13 306 106 0 0 chr13 50599260 50599307 -69145591 + (TG)n Simple_repeat Simple_repeat 1 47 0 326 200 148 30 chr13 50600010 50600027 -69144871 - L1MA10 LINE L1 -1 6333 6317 1693 223 174 4 chr13 50600027 50600174 -69144724 - L1ME1 LINE L1 -9 6157 6011 2831 228 145 10 chr13 50600174 50601391 -69143507 - L1MA10 LINE L1 -199 5990 4603 195 302 0 0 chr13 50601516 50601559 -69143339 + MIR SINE MIR 111 153 -55 26 30 0 0 chr13 50602059 50602092 -69142806 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr13 50602221 50602245 -69142653 + AT_rich Low_complexity Low_complexity 1 24 0 705 176 13 75 chr13 50603487 50603646 -69141252 + MIR SINE MIR 64 212 -50 184 368 66 0 chr13 50603912 50603988 -69140910 + MIR SINE MIR 20 100 -162 184 237 0 0 chr13 50603992 50604030 -69140868 + MIR SINE MIR 168 205 -57 1770 151 74 19 chr13 50604469 50604793 -69140105 - MER2 DNA MER2_type -1 343 2 697 251 104 22 chr13 50604822 50605053 -69139845 + MIR SINE MIR 3 252 -10 2405 56 7 13 chr13 50605224 50605530 -69139368 - AluSq SINE Alu -9 304 1 25 0 0 0 chr13 50606412 50606437 -69138461 + AT_rich Low_complexity Low_complexity 1 25 0 2094 105 0 14 chr13 50606448 50606734 -69138164 + AluSx SINE Alu 1 282 -30 207 326 86 29 chr13 50608121 50608296 -69136602 + L2 LINE L2 2201 2385 -929 221 363 140 38 chr13 50608480 50608772 -69136126 + L2 LINE L2 2563 2884 -430 403 277 121 0 chr13 50609170 50609311 -69135587 - MIR SINE MIR -56 206 49 26 64 0 0 chr13 50611247 50611294 -69133604 + AT_rich Low_complexity Low_complexity 1 47 0 231 380 83 9 chr13 50611505 50611613 -69133285 + L2 LINE L2 3180 3295 -18 23 0 0 0 chr13 50611787 50611810 -69133088 + AT_rich Low_complexity Low_complexity 1 23 0 2295 101 3 0 chr13 50612037 50612345 -69132553 - AluSp SINE Alu -3 310 2 219 69 0 0 chr13 50613106 50613135 -69131763 + (GAA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr13 50613395 50613430 -69131468 + AT_rich Low_complexity Low_complexity 1 35 0 1166 191 59 7 chr13 50613832 50614136 -69130762 + MER33 DNA MER1_type 5 324 0 734 255 112 5 chr13 50614456 50614652 -69130246 - MIR SINE MIR -3 259 43 21 36 0 0 chr13 50615080 50615108 -69129790 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 50615481 50615510 -69129388 + AT_rich Low_complexity Low_complexity 1 29 0 672 314 193 19 chr13 50615510 50616045 -69128853 + L2 LINE L2 2298 2925 -389 608 289 156 68 chr13 50616048 50616550 -69128348 + L2 LINE L2 2751 3299 -14 282 249 42 90 chr13 50616693 50616728 -69128170 + L1ME4a LINE L1 5942 5977 -144 2382 89 0 0 chr13 50616728 50617031 -69127867 - AluSx SINE Alu -9 303 1 282 249 42 90 chr13 50617031 50617184 -69127714 + L1ME4a LINE L1 5977 6121 0 277 305 139 60 chr13 50617190 50617492 -69127406 + L3b LINE CR1 1245 1570 -13 290 297 63 27 chr13 50618269 50618380 -69126518 + L2 LINE L2 3190 3304 -9 216 0 0 0 chr13 50619468 50619492 -69125406 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1866 118 4 0 chr13 50619494 50619748 -69125150 - AluSx SINE Alu -55 257 3 652 227 30 78 chr13 50620236 50620505 -69124393 + L1MC5 LINE L1 7268 7523 -438 228 67 0 0 chr13 50621469 50621499 -69123399 + (CA)n Simple_repeat Simple_repeat 1 30 0 780 287 92 20 chr13 50622018 50622561 -69122337 + L1ME3A LINE L1 5292 5873 -297 334 333 0 0 chr13 50622569 50622686 -69122212 - L1ME3A LINE L1 -18 6152 6036 440 238 131 6 chr13 50622704 50622864 -69122034 - L1ME3A LINE L1 -217 5953 5774 1157 188 38 0 chr13 50622866 50623079 -69121819 - AluJo SINE Alu -18 294 74 1475 228 89 14 chr13 50623098 50623356 -69121542 - L1ME3A LINE L1 -440 5730 5424 276 77 0 0 chr13 50623356 50623395 -69121503 + (TG)n Simple_repeat Simple_repeat 2 40 0 1475 228 89 14 chr13 50623395 50623575 -69121323 - L1ME3A LINE L1 -746 5424 5259 2014 104 16 39 chr13 50623599 50623908 -69120990 + MER1B DNA MER1_type 38 339 0 515 286 174 19 chr13 50623908 50624282 -69120616 - L1ME3A LINE L1 -895 5251 4820 196 381 48 0 chr13 50624893 50624998 -69119900 - L2 LINE L2 -4 3268 3159 726 213 84 36 chr13 50625240 50625489 -69119409 - MIR SINE MIR 0 262 2 26 64 0 0 chr13 50625585 50625632 -69119266 + AT_rich Low_complexity Low_complexity 1 47 0 494 246 98 0 chr13 50625815 50625937 -69118961 - MIR SINE MIR 0 262 129 2226 110 3 0 chr13 50626955 50627265 -69117633 + AluY SINE Alu 1 311 0 1633 162 29 16 chr13 50627593 50627717 -69117181 + AluJo SINE Alu 1 122 -190 369 0 0 0 chr13 50627717 50627758 -69117140 + (CA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr13 50627757 50627778 -69117120 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 1633 162 29 16 chr13 50627758 50627961 -69116937 + AluJo SINE Alu 122 312 0 199 200 0 0 chr13 50628695 50628730 -69116168 - L2 LINE L2 -260 3053 3019 247 313 28 27 chr13 50629276 50629473 -69115425 + MLT1H1 LTR MaLR 185 370 -185 422 177 51 0 chr13 50629500 50629579 -69115319 + MLT1H1 LTR MaLR 463 545 -10 580 299 136 71 chr13 50629589 50630442 -69114456 + L2 LINE L2 1911 2873 -399 1776 78 0 4 chr13 50630442 50630673 -69114225 - MER30 DNA MER1_type 0 230 1 580 299 136 71 chr13 50630673 50630848 -69114050 + L2 LINE L2 2873 3035 -237 1910 119 72 0 chr13 50631408 50631686 -69113212 + AluSx SINE Alu 1 298 -14 2390 81 0 3 chr13 50631800 50632096 -69112802 - AluSq SINE Alu -16 297 3 227 228 76 43 chr13 50632412 50632504 -69112394 - MIR SINE MIR -1 261 167 382 223 68 10 chr13 50632725 50632828 -69112070 - HsTC2 DNA Tc2 -1008 890 782 573 93 0 0 chr13 50632842 50632972 -69111926 + AluSg/x SINE Alu 209 338 0 268 377 14 7 chr13 50633100 50633246 -69111652 - HsTC2 DNA Tc2 -1261 637 491 3260 220 93 29 chr13 50633381 50634583 -69110315 + L1ME1 LINE L1 4078 5202 -964 2150 105 0 3 chr13 50634583 50634910 -69109988 + AluSx SINE Alu 1 326 0 3260 220 93 29 chr13 50634910 50634925 -69109973 + L1ME1 LINE L1 5202 5215 -951 2265 111 3 0 chr13 50634925 50635232 -69109666 + AluSx SINE Alu 1 308 -4 3260 220 93 29 chr13 50635232 50635965 -69108933 + L1ME1 LINE L1 5215 6161 -5 444 220 139 17 chr13 50686771 50686944 -69057954 - LTR33 LTR ERVL 0 521 328 268 174 101 0 chr13 50687131 50687200 -69057698 - LTR33 LTR ERVL -444 77 2 324 22 22 0 chr13 50687556 50687602 -69057296 - MADE1 DNA Mariner 0 80 34 2568 7 0 0 chr13 50688238 50688521 -69056377 + AluYb8 SINE Alu 1 283 -35 2080 118 4 0 chr13 50688659 50688939 -69055959 - AluSc SINE Alu -15 294 14 2379 70 0 0 chr13 50689242 50689551 -69055347 + AluY SINE Alu 1 309 0 649 203 71 78 chr13 50689871 50690152 -69054746 - MLT1A1 LTR MaLR 0 365 87 399 228 43 0 chr13 50690177 50690269 -69054629 - MLT1J LTR MaLR -105 406 311 * 502 168 11 0 chr13 50690267 50690362 -69054536 - MLT1A1 LTR MaLR -298 98 3 266 338 0 0 chr13 50690419 50690487 -69054411 + MIR SINE MIR 57 124 -84 1589 194 8 26 chr13 50690816 50691167 -69053731 + L1M3 LINE L1 5440 5784 -399 2427 78 6 6 chr13 50691184 50691519 -69053379 - L1PA10 LINE L1 0 6168 5834 649 91 0 0 chr13 50691519 50691618 -69053280 - L1PA10 LINE L1 -612 5562 5464 2816 170 33 2 chr13 50691622 50692133 -69052765 - MER44D DNA MER2_type -23 582 1 408 266 196 5 chr13 50692613 50692827 -69052071 + MLT1K LTR MaLR 324 578 -10 353 256 240 0 chr13 50693059 50693180 -69051718 - MIR3 SINE MIR -11 197 48 1165 206 125 22 chr13 50693321 50693681 -69051217 + MLT2C1 LTR ERVL 1 397 0 31 58 0 0 chr13 50693738 50693790 -69051108 + AT_rich Low_complexity Low_complexity 1 52 0 342 311 42 17 chr13 50694569 50694688 -69050210 - MER5B DNA MER1_type -2 176 55 550 255 106 16 chr13 50694748 50694936 -69049962 - L3 LINE CR1 -2 1575 1371 630 279 119 10 chr13 50697213 50697414 -69047484 - MIR SINE MIR -12 250 28 398 201 173 36 chr13 50697419 50697558 -69047340 - L2 LINE L2 -1 3312 3155 375 264 78 82 chr13 50697700 50697931 -69046967 - L2 LINE L2 -199 3073 2844 1486 177 90 153 chr13 50698248 50698825 -69046073 - MLT1F LTR MaLR 0 542 2 231 239 14 14 chr13 50698916 50698987 -69045911 - LTR33 LTR ERVL -69 452 382 873 228 50 15 chr13 50699052 50699254 -69045644 - MER63A DNA MER1_type 0 210 2 261 0 0 0 chr13 50699873 50699902 -69044996 + (T)n Simple_repeat Simple_repeat 1 29 0 1872 107 61 0 chr13 50700494 50700756 -69044142 + AluSx SINE Alu 1 278 -34 718 11 0 21 chr13 50700757 50700850 -69044048 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 229 370 161 0 chr13 50701433 50701625 -69043273 + L2 LINE L2 2165 2387 -927 274 263 121 0 chr13 50702128 50702227 -69042671 - MIR SINE MIR 0 262 152 339 244 12 0 chr13 50702227 50702313 -69042585 - MER46C DNA MER2_type -1 337 251 303 162 0 95 chr13 50702316 50702390 -69042508 + MIR SINE MIR 114 180 -82 195 42 0 0 chr13 50702582 50702606 -69042292 + (T)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr13 50703108 50703137 -69041761 + AT_rich Low_complexity Low_complexity 1 29 0 321 347 13 38 chr13 50703225 50703418 -69041480 - MIR SINE MIR -53 209 23 4473 172 57 4 chr13 50703525 50704763 -69040135 + L1MB2 LINE L1 4874 6171 0 216 0 0 0 chr13 50705444 50705468 -69039430 + (A)n Simple_repeat Simple_repeat 1 24 0 2194 97 3 0 chr13 50705487 50705777 -69039121 + AluSp SINE Alu 1 291 -22 267 31 0 0 chr13 50709429 50709461 -69035437 + (CCG)n Simple_repeat Simple_repeat 1 32 0 188 132 0 26 chr13 50709635 50709673 -69035225 + (GGGAA)n Simple_repeat Simple_repeat 2 38 0 442 275 144 53 chr13 50709828 50710112 -69034786 + L1M2 LINE L1 772 1081 -5768 36 23 0 0 chr13 50711039 50711082 -69033816 + GC_rich Low_complexity Low_complexity 1 43 0 40 21 0 0 chr13 50711321 50711368 -69033530 + GC_rich Low_complexity Low_complexity 1 47 0 2042 159 72 0 chr13 50713096 50713455 -69031443 - MSTB LTR MaLR -41 385 1 2405 184 16 11 chr13 50713455 50713907 -69030991 - MLT2B2 LTR ERVL -61 454 1 15552 101 17 17 chr13 50714405 50716873 -69028025 + L1P LINE L1 442 2909 -3237 486 221 25 25 chr13 50717800 50717922 -69026976 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 3347 133 93 10 chr13 50717905 50717969 -69026929 + Tigger3(Golem) DNA MER2_type 2281 2338 -690 1956 82 26 65 chr13 50717969 50718275 -69026623 + AluY SINE Alu 1 294 -17 3347 133 93 10 chr13 50718275 50718901 -69025997 + Tigger3(Golem) DNA MER2_type 2338 3028 0 546 278 91 37 chr13 50718996 50719237 -69025661 - MIR SINE MIR -1 261 8 278 295 84 0 chr13 50719371 50719466 -69025432 - MIR SINE MIR -75 187 85 1990 140 0 0 chr13 50719836 50720121 -69024777 - AluSx SINE Alu -16 296 12 2155 88 37 30 chr13 50720153 50720449 -69024449 - AluSq SINE Alu -15 298 1 183 270 0 0 chr13 50720522 50720559 -69024339 + L2 LINE L2 3020 3056 -216 1791 138 90 16 chr13 50720571 50720883 -69024015 + MER1B DNA MER1_type 3 337 0 22 35 0 0 chr13 50721103 50721132 -69023766 + AT_rich Low_complexity Low_complexity 1 29 0 253 312 75 0 chr13 50721211 50721304 -69023594 + MIR3 SINE MIR 98 197 -11 629 220 8 0 chr13 50721589 50721707 -69023191 + FLAM_A SINE Alu 1 119 -14 676 156 65 65 chr13 50722083 50722266 -69022632 - AluSg/x SINE Alu 0 314 132 250 302 101 36 chr13 50722559 50722698 -69022200 - MIR SINE MIR -71 191 44 996 182 6 0 chr13 50723085 50723255 -69021643 - FRAM SINE Alu -6 170 1 1891 177 3 0 chr13 50724090 50724384 -69020514 + 7SLRNA srpRNA srpRNA 3 297 -23 218 186 51 51 chr13 50724386 50724445 -69020453 - MIR SINE MIR -61 147 89 1557 88 77 25 chr13 50724971 50725256 -69019642 - L1MA5A LINE L1 0 6297 5998 181 250 47 47 chr13 50725723 50725787 -69019111 + L2 LINE L2 3250 3313 0 264 30 0 0 chr13 50727504 50727537 -69017361 + (CA)n Simple_repeat Simple_repeat 2 34 0 290 261 26 83 chr13 50727591 50727794 -69017104 + MER20B DNA MER1_type 4 203 -16 671 228 123 33 chr13 50727889 50728100 -69016798 + MIR SINE MIR 28 257 -5 287 314 59 25 chr13 50728757 50728993 -69015905 - L1ME LINE L1 -302 5819 5576 1239 165 4 22 chr13 50729466 50729696 -69015202 - AluJb SINE Alu -1 311 86 2395 59 0 3 chr13 50729907 50730197 -69014701 + L1P2 LINE L1 5495 5783 -371 21743 67 2 0 chr13 50730207 50732927 -69011971 + L1P LINE L1 9 2734 -3412 22952 53 13 5 chr13 50733027 50735942 -69008956 - L1P LINE L1 -2954 3192 253 446 270 44 44 chr13 50736086 50736245 -69008653 + L2 LINE L2 3107 3265 -48 259 323 34 64 chr13 50736390 50736625 -69008273 - L2 LINE L2 -218 3054 2827 30 27 0 0 chr13 50736881 50736918 -69007980 + AT_rich Low_complexity Low_complexity 1 37 0 37 0 0 0 chr13 50737104 50737141 -69007757 + AT_rich Low_complexity Low_complexity 1 37 0 369 67 0 33 chr13 50737142 50737202 -69007696 - L1PB1 LINE L1 -3 6148 6091 * 17364 34 9 1 chr13 50737197 50739953 -69004945 - L1PA5 LINE L1 0 6154 3381 7629 168 59 103 chr13 50740217 50742053 -69002845 - MER52A LTR ERV1 0 1755 1 396 350 6 28 chr13 50742430 50742610 -69002288 - MER5B DNA MER1_type 0 178 3 289 268 10 62 chr13 50743917 50744014 -69000884 - L2 LINE L2 -2 3270 3179 315 206 52 41 chr13 50744101 50744198 -69000700 - HsTC2a DNA Tc2 0 742 645 1691 221 64 20 chr13 50744205 50744612 -69000286 - HsTC2a DNA Tc2 -316 428 4 1342 216 43 7 chr13 50744913 50745191 -68999707 + MSTB LTR MaLR 1 288 -138 701 89 0 122 chr13 50746110 50746161 -68998737 + MSTB LTR MaLR 325 354 -78 2329 104 3 0 chr13 50746161 50746470 -68998428 - AluSx SINE Alu -2 310 1 701 89 0 122 chr13 50746470 50746541 -68998357 + MSTB LTR MaLR 354 432 0 247 339 61 48 chr13 50746545 50746640 -68998258 - L2 LINE L2 -594 2720 2628 1816 159 20 3 chr13 50746640 50746935 -68997963 - AluSx SINE Alu -10 302 3 247 339 61 48 chr13 50746935 50747069 -68997829 - L2 LINE L2 -686 2628 2488 636 283 108 21 chr13 50747198 50747484 -68997414 - L2 LINE L2 -2 3311 3001 1815 164 76 48 chr13 50747532 50747840 -68997058 + MLT1A1 LTR MaLR 1 299 -66 216 0 0 0 chr13 50747840 50747864 -68997034 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2043 117 0 7 chr13 50747865 50748147 -68996751 - AluSx SINE Alu -32 280 1 1815 164 76 48 chr13 50748147 50748190 -68996708 + MLT1A1 LTR MaLR 298 364 -1 278 270 9 81 chr13 50748409 50748520 -68996378 - L2 LINE L2 -2 3270 3168 836 134 23 148 chr13 50748523 50748739 -68996159 - MER53 DNA DNA 0 189 1 999 239 151 65 chr13 50749567 50749763 -68995135 + L2 LINE L2 2474 2652 -661 670 104 9 264 chr13 50749763 50749983 -68994915 - FRAM SINE Alu 0 166 3 999 239 151 65 chr13 50749983 50750478 -68994420 + L2 LINE L2 2652 3309 -4 351 274 85 90 chr13 50750711 50750799 -68994099 + MIR SINE MIR 46 133 -129 1719 173 0 13 chr13 50750799 50751105 -68993793 - AluJo SINE Alu -10 302 1 351 274 85 90 chr13 50751105 50751217 -68993681 + MIR SINE MIR 133 245 -17 2033 136 46 60 chr13 50751508 50751876 -68993022 + MLT2D LTR ERVL 4 366 -48 22244 84 3 4 chr13 50752173 50755829 -68989069 - L1PA7 LINE L1 -5 6149 2480 1982 218 84 89 chr13 50755932 50756517 -68988381 - L1ME LINE L1 -386 5780 5191 2447 71 10 0 chr13 50756517 50756813 -68988085 + AluY SINE Alu 1 299 -12 1982 218 84 89 chr13 50756813 50757387 -68987511 - L1ME LINE L1 -975 5191 4616 635 205 83 79 chr13 50757397 50757626 -68987272 - L1ME LINE L1 -1619 4527 4298 616 256 0 16 chr13 50757628 50757753 -68987145 - FLAM_A SINE Alu -14 128 6 1003 228 133 78 chr13 50757779 50758289 -68986609 - L1ME LINE L1 -1869 4277 3740 1280 236 8 61 chr13 50758301 50758662 -68986236 - MLT2B1 LTR ERVL -178 342 1 248 316 43 17 chr13 50758679 50758796 -68986102 - MIR3 SINE MIR -6 202 83 22 70 0 0 chr13 50758805 50758848 -68986050 + AT_rich Low_complexity Low_complexity 1 43 0 294 222 14 14 chr13 50758896 50758968 -68985930 + L1MB7 LINE L1 6104 6175 -9 2852 260 58 39 chr13 50759082 50759724 -68985174 + L2 LINE L2 2109 2775 -538 2261 84 10 17 chr13 50759724 50760021 -68984877 + AluSq SINE Alu 3 297 -16 2852 260 58 39 chr13 50760021 50760395 -68984503 + L2 LINE L2 2775 3140 -173 395 236 56 83 chr13 50760783 50760927 -68983971 + MER5B DNA MER1_type 36 175 -3 300 246 14 0 chr13 50761660 50761729 -68983169 - MIR SINE MIR -76 132 63 1456 201 32 29 chr13 50762330 50762678 -68982220 + MLT1A2 LTR MaLR 1 349 -25 898 269 170 17 chr13 50762941 50763353 -68981545 - L2 LINE L2 0 3313 2839 1996 179 60 54 chr13 50763500 50763963 -68980935 - MLT1C LTR MaLR 0 467 2 245 222 0 28 chr13 50765106 50765178 -68979720 - L1MC4a LINE L1 -1861 5947 5878 * 548 173 30 147 chr13 50765173 50765248 -68979650 - L1MB8 LINE L1 -1 6177 6095 2195 112 3 3 chr13 50765248 50765543 -68979355 - AluSc SINE Alu -14 295 1 1759 79 3 201 chr13 50765548 50765925 -68978973 - AluSx SINE Alu 0 307 1 548 173 30 147 chr13 50765925 50766073 -68978825 - L1MB8 LINE L1 -87 6091 5974 624 152 0 0 chr13 50766941 50767033 -68977865 - Tigger7 DNA MER2_type 0 2491 2400 * 2720 175 39 16 chr13 50767032 50767541 -68977357 - Tigger7 DNA MER2_type -212 521 1 206 276 26 40 chr13 50767667 50767743 -68977155 - L2 LINE L2 -265 3007 2933 292 170 75 0 chr13 50767878 50767931 -68976967 - MLT2B1 LTR ERVL 0 520 464 1701 147 99 6 chr13 50767935 50768248 -68976650 - MER7A DNA MER2_type -6 340 1 22 56 0 0 chr13 50768507 50768543 -68976355 + AT_rich Low_complexity Low_complexity 1 36 0 1928 138 0 14 chr13 50770197 50770494 -68974404 - AluSx SINE Alu -19 293 1 492 97 75 43 chr13 50771193 50771286 -68973612 - L1MB2 LINE L1 0 6171 6076 26 30 0 0 chr13 50771299 50771332 -68973566 + AT_rich Low_complexity Low_complexity 1 33 0 371 325 38 25 chr13 50771499 50771656 -68973242 - L2 LINE L2 -208 3064 2906 21 36 0 0 chr13 50771664 50771692 -68973206 + AT_rich Low_complexity Low_complexity 1 28 0 568 216 10 0 chr13 50772880 50772977 -68971921 - AluJ/FLAM SINE Alu -213 99 2 581 274 83 98 chr13 50774861 50775137 -68969761 - MLT1J LTR MaLR -46 465 197 2035 111 18 4 chr13 50775137 50775417 -68969481 + AluSq SINE Alu 13 296 -17 581 274 83 98 chr13 50775417 50775611 -68969287 - MLT1J LTR MaLR -314 197 2 3622 138 69 0 chr13 50776015 50776625 -68968273 + Tigger3b DNA MER2_type 10 661 -570 1896 145 16 26 chr13 50776626 50776937 -68967961 - AluJb SINE Alu -3 309 2 353 45 0 0 chr13 50776937 50776981 -68967917 + (TG)n Simple_repeat Simple_repeat 1 44 0 15710 32 1 1 chr13 50777121 50778156 -68966742 + L1PA4 LINE L1 3597 4631 -1524 2301 87 0 31 chr13 50778156 50778477 -68966421 + AluY SINE Alu 1 311 0 15710 32 1 1 chr13 50778477 50779995 -68964903 + L1PA4 LINE L1 4630 6153 -2 1057 200 167 10 chr13 50780002 50780392 -68964506 + Charlie2a DNA MER1_type 1215 1665 -1197 1635 202 20 7 chr13 50780395 50780687 -68964211 + AluJo SINE Alu 2 297 -15 3046 152 19 10 chr13 50780690 50780731 -68964167 - L1M4 LINE L1 -360 5818 5779 2122 126 10 3 chr13 50780731 50781041 -68963857 - AluSq SINE Alu -1 312 1 3046 152 19 10 chr13 50781041 50781601 -68963297 - L1M4 LINE L1 -399 5779 5215 1238 171 60 109 chr13 50781601 50781653 -68963245 + Charlie2a DNA MER1_type 2004 2057 -805 2122 132 6 0 chr13 50781653 50781964 -68962934 + AluSq SINE Alu 1 313 0 1238 171 60 109 chr13 50781964 50782189 -68962709 + Charlie2a DNA MER1_type 2057 2245 -617 1916 125 50 16 chr13 50782189 50782492 -68962406 + AluSq SINE Alu 1 313 0 1238 171 60 109 chr13 50782492 50782734 -68962164 + Charlie2a DNA MER1_type 2245 2498 -364 756 299 38 44 chr13 50783424 50783681 -68961217 - L2 LINE L2 -2 3311 3055 1985 136 17 13 chr13 50783681 50783983 -68960915 - AluSx SINE Alu -9 303 1 756 299 38 44 chr13 50783983 50784090 -68960808 - L2 LINE L2 -258 3055 2949 1033 254 145 70 chr13 50784151 50784648 -68960250 - L2 LINE L2 -537 2777 2244 671 264 345 53 chr13 50784756 50784822 -68960076 - L2 LINE L2 -1532 1782 1736 1764 166 7 10 chr13 50784822 50785124 -68959774 - AluJb SINE Alu -8 304 4 671 264 345 53 chr13 50785124 50785410 -68959488 - L2 LINE L2 -1578 1736 1535 2398 86 3 0 chr13 50785410 50785713 -68959185 - AluSx SINE Alu -8 304 1 671 264 345 53 chr13 50785713 50785985 -68958913 - L2 LINE L2 -1779 1535 974 219 237 34 0 chr13 50786011 50786070 -68958828 - MIR SINE MIR -22 240 180 233 180 100 110 chr13 50786261 50786361 -68958537 + MLT1K LTR MaLR 490 588 0 381 287 82 62 chr13 50787537 50787781 -68957117 - MIR SINE MIR -8 254 6 305 240 199 14 chr13 50787983 50788123 -68956775 - MIR SINE MIR -78 130 3 1154 128 51 36 chr13 50788235 50788431 -68956467 + MER3 DNA MER1_type 7 205 -4 699 253 68 14 chr13 50788859 50789080 -68955818 + Charlie8 DNA MER1_type 54 286 -2131 295 217 0 0 chr13 50789112 50789172 -68955726 + Charlie8 DNA MER1_type 2357 2416 -1 324 324 9 0 chr13 50789198 50789303 -68955595 - MIR SINE MIR -56 206 101 1927 103 4 15 chr13 50790258 50790520 -68954378 - AluSx SINE Alu -53 259 1 25 0 0 0 chr13 50790531 50790556 -68954342 + AT_rich Low_complexity Low_complexity 1 25 0 2442 56 7 13 chr13 50791314 50791620 -68953278 + AluSq SINE Alu 1 304 -9 696 251 104 22 chr13 50791791 50792022 -68952876 - MIR SINE MIR -10 252 3 1771 151 74 19 chr13 50792051 50792375 -68952523 + MER2 DNA MER2_type 2 343 -1 184 325 44 6 chr13 50792814 50792932 -68951966 - MIR SINE MIR -57 205 20 703 176 13 75 chr13 50793198 50793357 -68951541 - MIR SINE MIR -50 212 64 211 326 86 29 chr13 50795436 50795611 -68949287 + L2 LINE L2 2201 2385 -929 220 363 140 38 chr13 50795795 50796087 -68948811 + L2 LINE L2 2563 2884 -430 396 277 121 0 chr13 50796485 50796626 -68948272 - MIR SINE MIR -56 206 49 26 64 0 0 chr13 50798562 50798609 -68946289 + AT_rich Low_complexity Low_complexity 1 47 0 222 380 83 9 chr13 50798820 50798928 -68945970 + L2 LINE L2 3180 3295 -18 23 0 0 0 chr13 50799102 50799125 -68945773 + AT_rich Low_complexity Low_complexity 1 23 0 2329 101 3 0 chr13 50799352 50799660 -68945238 - AluSp SINE Alu -3 310 2 219 69 0 0 chr13 50800421 50800450 -68944448 + (GAA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr13 50800710 50800745 -68944153 + AT_rich Low_complexity Low_complexity 1 35 0 1137 191 59 7 chr13 50801147 50801451 -68943447 + MER33 DNA MER1_type 5 324 0 728 255 112 5 chr13 50801771 50801967 -68942931 - MIR SINE MIR -3 259 43 21 36 0 0 chr13 50802395 50802423 -68942475 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 50802796 50802825 -68942073 + AT_rich Low_complexity Low_complexity 1 29 0 684 314 193 19 chr13 50802825 50803360 -68941538 + L2 LINE L2 2298 2925 -389 608 289 156 68 chr13 50803363 50803865 -68941033 + L2 LINE L2 2751 3299 -14 261 249 42 90 chr13 50804008 50804043 -68940855 + L1ME4a LINE L1 5942 5977 -144 2417 89 0 0 chr13 50804043 50804346 -68940552 - AluSx SINE Alu -9 303 1 261 249 42 90 chr13 50804346 50804499 -68940399 + L1ME4a LINE L1 5977 6121 0 257 305 89 64 chr13 50804505 50804708 -68940190 + L3b LINE CR1 1245 1452 -131 293 297 63 27 chr13 50805584 50805695 -68939203 + L2 LINE L2 3190 3304 -9 216 0 0 0 chr13 50806783 50806807 -68938091 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1896 118 4 0 chr13 50806809 50807063 -68937835 - AluSx SINE Alu -55 257 3 638 227 30 78 chr13 50807551 50807820 -68937078 + L1MC5 LINE L1 7268 7523 -438 228 67 0 0 chr13 50808784 50808814 -68936084 + (CA)n Simple_repeat Simple_repeat 1 30 0 738 287 92 20 chr13 50809333 50809876 -68935022 + L1ME3A LINE L1 5292 5873 -297 324 333 0 0 chr13 50809884 50810001 -68934897 - L1ME3A LINE L1 -18 6152 6036 428 238 131 6 chr13 50810019 50810179 -68934719 - L1ME3A LINE L1 -217 5953 5774 1173 188 38 0 chr13 50810181 50810394 -68934504 - AluJo SINE Alu -18 294 74 1451 228 89 14 chr13 50810413 50810671 -68934227 - L1ME3A LINE L1 -440 5730 5424 276 77 0 0 chr13 50810671 50810710 -68934188 + (TG)n Simple_repeat Simple_repeat 2 40 0 1451 228 89 14 chr13 50810710 50810890 -68934008 - L1ME3A LINE L1 -746 5424 5259 2042 104 16 39 chr13 50810914 50811223 -68933675 + MER1B DNA MER1_type 38 339 0 486 286 174 19 chr13 50811223 50811597 -68933301 - L1ME3A LINE L1 -895 5251 4820 192 381 48 0 chr13 50812208 50812313 -68932585 - L2 LINE L2 -4 3268 3159 724 213 84 36 chr13 50812555 50812804 -68932094 - MIR SINE MIR 0 262 2 26 64 0 0 chr13 50812900 50812947 -68931951 + AT_rich Low_complexity Low_complexity 1 47 0 492 246 98 0 chr13 50813130 50813252 -68931646 - MIR SINE MIR 0 262 129 2256 110 3 0 chr13 50814270 50814580 -68930318 + AluY SINE Alu 1 311 0 1663 162 29 16 chr13 50814908 50815032 -68929866 + AluJo SINE Alu 1 122 -190 369 0 0 0 chr13 50815032 50815073 -68929825 + (CA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr13 50815072 50815093 -68929805 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 1663 162 29 16 chr13 50815073 50815276 -68929622 + AluJo SINE Alu 122 312 0 199 200 0 0 chr13 50816010 50816045 -68928853 - L2 LINE L2 -260 3053 3019 247 313 28 27 chr13 50816591 50816788 -68928110 + MLT1H1 LTR MaLR 185 370 -185 422 177 51 0 chr13 50816815 50816894 -68928004 + MLT1H1 LTR MaLR 463 545 -10 580 299 136 71 chr13 50816904 50817757 -68927141 + L2 LINE L2 1911 2873 -399 1776 78 0 4 chr13 50817757 50817988 -68926910 - MER30 DNA MER1_type 0 230 1 580 299 136 71 chr13 50817988 50818163 -68926735 + L2 LINE L2 2873 3035 -237 1910 119 72 0 chr13 50818723 50819001 -68925897 + AluSx SINE Alu 1 298 -14 2316 91 0 3 chr13 50819160 50819456 -68925442 - AluSq SINE Alu -16 297 3 227 228 76 43 chr13 50819772 50819864 -68925034 - MIR SINE MIR -1 261 167 382 223 68 10 chr13 50820085 50820188 -68924710 - HsTC2 DNA Tc2 -1008 890 782 573 93 0 0 chr13 50820202 50820332 -68924566 + AluSg/x SINE Alu 209 338 0 268 377 14 7 chr13 50820460 50820606 -68924292 - HsTC2 DNA Tc2 -1261 637 491 3260 220 93 29 chr13 50820741 50821943 -68922955 + L1ME1 LINE L1 4078 5202 -964 2150 105 0 3 chr13 50821943 50822270 -68922628 + AluSx SINE Alu 1 326 0 3260 220 93 29 chr13 50822270 50822285 -68922613 + L1ME1 LINE L1 5202 5215 -951 2265 111 3 0 chr13 50822285 50822592 -68922306 + AluSx SINE Alu 1 308 -4 3260 220 93 29 chr13 50822592 50823325 -68921573 + L1ME1 LINE L1 5215 6161 -5 433 249 126 1 chr13 50824461 50824604 -68920294 - MIR SINE MIR -62 146 39 626 249 105 24 chr13 50824692 50824901 -68919997 + L1MC5 LINE L1 6614 6839 -1122 402 293 122 32 chr13 50824923 50825169 -68919729 + MLT1J LTR MaLR 12 279 -232 333 0 0 0 chr13 50825847 50825884 -68919014 + (CA)n Simple_repeat Simple_repeat 2 38 0 379 253 36 0 chr13 50826201 50826339 -68918559 - L1MD3 LINE L1 -2 8035 7900 2372 119 5 30 chr13 50826362 50826733 -68918165 + THE1B LTR MaLR 1 362 -2 22 0 0 0 chr13 50826736 50826758 -68918140 + AT_rich Low_complexity Low_complexity 1 22 0 4250 162 58 10 chr13 50827323 50828460 -68916438 - L1MB7 LINE L1 -92 6092 4901 304 135 0 19 chr13 50828868 50828920 -68915978 + L2 LINE L2 3258 3308 -5 229 143 0 0 chr13 50829168 50829203 -68915695 + Alu SINE Alu 256 290 -12 1138 168 245 7 chr13 50829488 50829798 -68915100 - L1MB8 LINE L1 0 6178 5795 985 215 27 9 chr13 50830566 50830785 -68914113 + MER58A DNA MER1_type 1 223 -1 306 155 62 70 chr13 50830852 50830981 -68913917 + Charlie7 DNA MER1_type 2444 2571 -41 21 36 0 0 chr13 50830969 50830997 -68913901 + AT_rich Low_complexity Low_complexity 1 28 0 * 24 0 0 0 chr13 50831424 50831448 -68913450 + AT_rich Low_complexity Low_complexity 1 24 0 368 311 88 7 chr13 50833165 50833313 -68911585 + L2 LINE L2 2597 2756 -558 210 71 0 0 chr13 50833917 50833945 -68910953 + (TG)n Simple_repeat Simple_repeat 2 29 0 284 284 134 8 chr13 50834213 50834340 -68910558 - L3b LINE CR1 -85 1498 1356 548 305 17 28 chr13 50834472 50834649 -68910249 + MER5B DNA MER1_type 4 178 0 219 340 52 21 chr13 50837057 50837154 -68907744 + L2 LINE L2 3141 3240 -32 339 358 58 0 chr13 50837348 50837468 -68907430 + MIR3 SINE MIR 50 176 -32 22 0 0 0 chr13 50838658 50838680 -68906218 + AT_rich Low_complexity Low_complexity 1 22 0 2423 85 3 7 chr13 50838756 50839063 -68905835 - AluSg SINE Alu -4 306 1 355 339 58 17 chr13 50839430 50839604 -68905294 - MIR SINE MIR -48 214 34 2248 119 7 0 chr13 50839923 50840226 -68904672 + AluSx SINE Alu 1 305 -7 20742 57 8 0 chr13 50840332 50843813 -68901085 + L1PA6 LINE L1 2660 6153 -1 1940 160 0 0 chr13 50844800 50845087 -68899811 - AluJb SINE Alu -25 287 1 1997 103 3 52 chr13 50846827 50847137 -68897761 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr13 50847170 50847191 -68897707 + AT_rich Low_complexity Low_complexity 1 21 0 800 253 89 32 chr13 50847392 50847763 -68897135 + LTR16A LTR ERVL 52 443 -7 230 241 172 0 chr13 50847827 50847914 -68896984 + MIR3 SINE MIR 97 198 -10 870 141 0 15 chr13 50848008 50848143 -68896755 + FLAM_C SINE Alu 1 133 0 403 299 44 101 chr13 50848873 50848970 -68895928 + L2 LINE L2 2914 3015 -257 2282 113 7 0 chr13 50848970 50849280 -68895618 - AluSx SINE Alu 0 312 1 403 299 44 101 chr13 50849280 50849567 -68895331 + L2 LINE L2 3015 3270 -2 2109 113 30 7 chr13 50850696 50850998 -68893900 + AluSg1 SINE Alu 1 309 0 1770 119 8 23 chr13 50851781 50852041 -68892857 - AluSq SINE Alu -15 298 43 1186 244 102 36 chr13 50852155 50852790 -68892108 - L2 LINE L2 0 3313 2636 636 327 48 16 chr13 50853133 50853381 -68891517 - MIR SINE MIR -2 260 5 216 0 0 0 chr13 50854517 50854541 -68890357 + (TG)n Simple_repeat Simple_repeat 2 25 0 1261 206 127 0 chr13 50854864 50855131 -68889767 + AluJo SINE Alu 1 301 -1 237 286 54 0 chr13 50855195 50855307 -68889591 + L1ME LINE L1 4490 4607 -1539 22 0 0 0 chr13 50855347 50855369 -68889529 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr13 50855426 50855453 -68889445 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr13 50855723 50855753 -68889145 + AT_rich Low_complexity Low_complexity 1 30 0 901 290 60 35 chr13 50855981 50856513 -68888385 + L1ME LINE L1 5265 5807 -314 625 118 0 0 chr13 50856513 50856606 -68888292 - AluJb SINE Alu -9 303 211 6757 63 5 0 chr13 50856622 50858234 -68886664 - L1PA7 LINE L1 0 6154 4533 2019 126 0 4 chr13 50858265 50858542 -68886356 - AluSg SINE Alu -34 276 1 1751 164 6 32 chr13 50858803 50859115 -68885783 + AluJb SINE Alu 1 304 -8 33 85 0 0 chr13 50859470 50859552 -68885346 + AT_rich Low_complexity Low_complexity 1 82 0 610 155 0 0 chr13 50859599 50859696 -68885202 + AluJb SINE Alu 209 305 -7 347 281 79 40 chr13 50860405 50860783 -68884115 - LTR16A LTR ERVL 0 491 24 1289 235 62 17 chr13 50860792 50860964 -68883934 + MLT1A2 LTR MaLR 1 164 -210 195 42 0 0 chr13 50860964 50860988 -68883910 + (TC)n Simple_repeat Simple_repeat 2 25 0 1289 235 62 17 chr13 50860988 50861168 -68883730 + MLT1A2 LTR MaLR 164 369 -5 792 243 130 34 chr13 50861511 50861803 -68883095 - MLT1A1 LTR MaLR -45 320 1 971 271 98 26 chr13 50862228 50862605 -68882293 + L2 LINE L2 2301 2704 -610 829 271 132 17 chr13 50862628 50863107 -68881791 - L1MC4a LINE L1 -1659 6149 5616 552 190 29 29 chr13 50863649 50863786 -68881112 + LTR45 LTR ERV1 389 525 0 400 291 0 18 chr13 50864255 50864365 -68880533 + MIR SINE MIR 20 127 -81 24 32 0 0 chr13 50864550 50864581 -68880317 + AT_rich Low_complexity Low_complexity 1 31 0 2137 149 0 0 chr13 50864972 50865280 -68879618 - AluSx SINE Alu -4 308 1 335 252 5 24 chr13 50865328 50865428 -68879470 - MIR SINE MIR -41 167 66 184 125 0 0 chr13 50865434 50865466 -68879432 - L2 LINE L2 0 3313 3282 446 349 132 24 chr13 50866332 50866673 -68878225 - L2 LINE L2 0 3272 2895 570 252 56 26 chr13 50866845 50867079 -68877819 + L1MC4a LINE L1 5699 5939 -1869 371 332 77 63 chr13 50867845 50868273 -68876625 - L2 LINE L2 -35 3237 2804 257 279 0 0 chr13 50868583 50868651 -68876247 - MIR SINE MIR -34 228 161 290 230 124 26 chr13 50868651 50868764 -68876134 - LTR67 LTR ERVL 0 557 434 405 274 14 55 chr13 50869093 50869239 -68875659 - MIR SINE MIR -104 158 19 269 387 65 0 chr13 50869282 50869468 -68875430 + L2 LINE L2 2565 2762 -552 292 328 65 97 chr13 50870435 50870743 -68874155 - L2 LINE L2 -37 3235 2938 2125 104 23 16 chr13 50870761 50871068 -68873830 + AluSc SINE Alu 1 309 0 289 322 125 29 chr13 50871626 50871834 -68873064 - L2 LINE L2 -454 2860 2633 262 286 0 0 chr13 50873412 50873482 -68871416 + L2 LINE L2 3203 3272 0 2818 111 7 7 chr13 50873914 50874357 -68870541 + L1MC1 LINE L1 5525 5967 -366 840 171 0 20 chr13 50874364 50874510 -68870388 + FLAM_C SINE Alu 1 143 0 1680 125 117 23 chr13 50874518 50874861 -68870037 + L1MC1 LINE L1 5958 6332 -1 504 237 46 46 chr13 50875265 50875417 -68869481 + MER5B DNA MER1_type 25 176 -2 332 296 50 19 chr13 50875917 50876076 -68868822 - MIR SINE MIR -29 233 70 388 123 62 0 chr13 50876706 50876771 -68868127 + U6 snRNA snRNA 1 69 -38 2151 100 3 13 chr13 50876816 50877117 -68867781 - AluSx SINE Alu -10 302 5 1677 232 133 45 chr13 50877117 50877985 -68866913 + Charlie2a DNA MER1_type 94 1037 -1825 754 91 0 0 chr13 50877988 50878087 -68866811 - AluSp/q SINE Alu -16 297 199 450 228 86 0 chr13 50878162 50878324 -68866574 + Charlie2a DNA MER1_type 1049 1224 -1638 33585 49 6 0 chr13 50878330 50882857 -68862041 + L1P LINE L1 11 4558 -1588 275 300 55 9 chr13 50883138 50883248 -68861650 - MIR SINE MIR -76 186 72 5903 72 28 3 chr13 50883558 50884305 -68860593 - MER4E LTR ERV1 0 766 1 26 64 0 0 chr13 50885599 50885646 -68859252 + GC_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr13 50887368 50887391 -68857507 + AT_rich Low_complexity Low_complexity 1 23 0 702 103 47 9 chr13 50887391 50887498 -68857400 - HY1 scRNA scRNA -1 111 1 336 298 105 0 chr13 50888247 50888371 -68856527 + L2 LINE L2 3175 3311 -2 189 298 0 0 chr13 50888507 50888554 -68856344 + L3 LINE CR1 1524 1570 -7 281 248 186 18 chr13 50888562 50888675 -68856223 - L2 LINE L2 0 3313 3182 323 237 88 79 chr13 50890489 50890603 -68854295 + MIR3 SINE MIR 42 156 -52 606 242 66 74 chr13 50890962 50891206 -68853692 + MER112 DNA MER1_type 6 247 -13 1310 44 6 0 chr13 50891478 50891636 -68853262 + L1PA4 LINE L1 5997 6155 0 2385 97 3 0 chr13 50891771 50892080 -68852818 + AluSx SINE Alu 2 311 -1 495 278 54 58 chr13 50892834 50893171 -68851727 - L1MC/D LINE L1 -537 5584 5255 26 0 0 0 chr13 50893267 50893293 -68851605 + AT_rich Low_complexity Low_complexity 1 26 0 1865 177 0 0 chr13 50893294 50893588 -68851310 - 7SLRNA srpRNA srpRNA -21 299 6 318 271 56 42 chr13 50894099 50894243 -68850655 + MIR SINE MIR 117 262 0 204 135 96 39 chr13 50895016 50895068 -68849830 + MIR SINE MIR 164 218 -44 28 0 0 0 chr13 50895625 50895653 -68849245 + AT_rich Low_complexity Low_complexity 1 28 0 320 197 0 0 chr13 50896017 50896078 -68848820 + HsTC2 DNA Tc2 2 62 -1836 319 215 47 47 chr13 50896287 50896394 -68848504 - MLT1H LTR MaLR -440 109 3 378 149 40 14 chr13 50896428 50896502 -68848396 + HsTC2 DNA Tc2 1823 1898 0 2579 163 102 4 chr13 50896642 50897102 -68847796 + MLT1D LTR MaLR 1 505 0 2216 116 0 3 chr13 50897283 50897575 -68847323 + AluSx SINE Alu 1 291 -21 747 183 41 24 chr13 50897604 50897773 -68847125 - MER20 DNA MER1_type -46 173 2 575 278 150 22 chr13 50898147 50898420 -68846478 + MLT1L LTR MaLR 246 553 -62 200 178 22 44 chr13 50898449 50898494 -68846404 - MIR SINE MIR -108 154 111 197 319 64 99 chr13 50898462 50898603 -68846295 - MIR3 SINE MIR -67 141 6 * 1266 144 0 0 chr13 50899406 50899580 -68845318 + FAM SINE Alu 1 174 -1 2337 79 0 3 chr13 50900275 50900565 -68844333 + AluSg SINE Alu 17 305 -5 1098 253 30 68 chr13 50900689 50901116 -68843782 - MLT1J LTR MaLR 0 511 101 377 258 144 54 chr13 50901515 50902067 -68842831 + L1MC/D LINE L1 5211 5814 -775 1517 217 25 0 chr13 50902315 50902592 -68842306 + AluJb SINE Alu 1 284 -28 458 209 33 0 chr13 50902794 50902885 -68842013 - MLT1I LTR MaLR 0 409 316 852 283 35 17 chr13 50902914 50903144 -68841754 - MLT1I LTR MaLR -154 255 22 325 167 90 51 chr13 50903145 50903223 -68841675 + MIR SINE MIR 161 241 -21 802 112 0 0 chr13 50903690 50903797 -68841101 - AluSg/x SINE Alu -10 302 196 200 216 198 9 chr13 50904721 50904832 -68840066 + L2 LINE L2 3179 3310 -3 1605 135 107 38 chr13 50905523 50905812 -68839086 + AluJo SINE Alu 1 309 -3 2466 73 0 0 chr13 50906836 50907136 -68837762 + AluSq SINE Alu 1 300 -13 299 391 105 0 chr13 50908243 50908376 -68836522 - L2 LINE L2 0 3272 3126 2143 138 0 0 chr13 50908563 50908867 -68836031 - AluSx SINE Alu -8 304 1 302 271 12 0 chr13 50908939 50909024 -68835874 + MER94 DNA DNA 44 129 -5 389 200 24 0 chr13 50909108 50909193 -68835705 + MIR SINE MIR 114 200 -62 1151 251 93 46 chr13 50910169 50910940 -68833958 - L2 LINE L2 -3 3310 2524 332 314 69 19 chr13 50911959 50912118 -68832780 + MIR SINE MIR 20 186 -76 6441 170 104 47 chr13 50912484 50913079 -68831819 - MER52A LTR ERV1 -1 1754 1194 2096 112 6 48 chr13 50913079 50913393 -68831505 - AluSq SINE Alu -12 301 1 6441 170 104 47 chr13 50913393 50914382 -68830516 - MER52A LTR ERV1 -561 1194 2 289 246 15 0 chr13 50914682 50914747 -68830151 + MIR3 SINE MIR 122 187 -21 197 100 50 0 chr13 50915500 50915540 -68829358 + T-rich Low_complexity Low_complexity 2 43 0 252 263 189 53 chr13 50915541 50915769 -68829129 - L1ME4a LINE L1 0 6121 5863 323 282 161 17 chr13 50915770 50915944 -68828954 + MLT1L LTR MaLR 413 611 -4 2360 92 0 16 chr13 50916471 50916788 -68828110 - AluSq SINE Alu 0 313 2 1941 115 14 7 chr13 50917058 50917357 -68827541 + AluSg SINE Alu 1 301 0 2157 89 0 4 chr13 50917590 50917859 -68827039 - AluSq SINE Alu -45 268 1 233 235 115 95 chr13 50917909 50918109 -68826789 + L1MC5 LINE L1 7706 7909 -52 212 358 166 19 chr13 50920014 50920321 -68824577 + L2 LINE L2 2492 2843 -471 3808 114 49 0 chr13 50920363 50920891 -68824007 + MER41C LTR ERV1 1 554 0 303 242 0 0 chr13 50921340 50921402 -68823496 - MER5A DNA MER1_type 0 189 128 1432 200 11 0 chr13 50921405 50921685 -68823213 - L1M4 LINE L1 -1076 5070 4788 336 343 72 25 chr13 50922600 50922836 -68822062 - MIR SINE MIR -10 252 6 2147 103 3 23 chr13 50923188 50923498 -68821400 + AluSx SINE Alu 5 308 -4 1179 134 0 6 chr13 50923735 50923899 -68820999 - AluSx SINE Alu -149 163 1 219 341 121 0 chr13 50924032 50924123 -68820775 - L2 LINE L2 -15 3298 3197 547 280 10 55 chr13 50924269 50924469 -68820429 - MIR SINE MIR -71 191 1 308 333 45 13 chr13 50924481 50924637 -68820261 + L1 LINE L1 4759 4919 -1227 392 309 29 15 chr13 50924995 50925131 -68819767 - MIR SINE MIR -121 141 4 1622 42 0 0 chr13 50925913 50926105 -68818793 + AluYa5 SINE Alu 119 310 -1 301 262 29 84 chr13 50926277 50926530 -68818368 - L1MEd LINE L1 -4924 1195 956 1745 138 17 38 chr13 50926530 50926844 -68818054 - AluJb SINE Alu 0 308 1 301 262 29 84 chr13 50926844 50926864 -68818034 - L1MEd LINE L1 -5163 956 936 2443 80 10 0 chr13 50926927 50927226 -68817672 - AluSc SINE Alu -7 302 1 1160 135 26 10 chr13 50927316 50927509 -68817389 - L1MB4 LINE L1 0 6180 5985 273 333 12 0 chr13 50927632 50927716 -68817182 - L2 LINE L2 -20 3252 3168 327 295 57 0 chr13 50930056 50930161 -68814737 + L2 LINE L2 2207 2317 -997 227 265 86 152 chr13 50930446 50930887 -68814011 + L2 LINE L2 2861 3272 0 1738 174 47 19 chr13 50931118 50931440 -68813458 - MER2 DNA MER2_type 0 345 15 1724 178 33 69 chr13 50931440 50931732 -68813166 - MER7A DNA MER2_type -2692 346 70 1642 167 3 39 chr13 50931732 50932038 -68812860 + AluJo SINE Alu 10 304 -8 1724 178 33 69 chr13 50932038 50932105 -68812793 - MER7A DNA MER2_type -2968 70 2 900 108 15 15 chr13 50932868 50932998 -68811900 + L1PA8A LINE L1 6000 6129 -2 2152 141 0 0 chr13 50933115 50933420 -68811478 + AluSx SINE Alu 1 305 -7 2562 43 3 18 chr13 50933676 50934003 -68810895 - L1PA4 LINE L1 0 6155 5834 36541 49 6 2 chr13 50934003 50938801 -68806097 - L1PA4 LINE L1 -1328 4818 3 5238 230 136 12 chr13 50939267 50941806 -68803092 - L1M4 LINE L1 -1811 4833 1876 1910 193 79 76 chr13 50941819 50942541 -68802357 - L1M4 LINE L1 -5003 1539 816 230 259 24 12 chr13 50942773 50942858 -68802040 - L1M4 LINE L1 -6455 87 2 2121 122 0 0 chr13 50943154 50943478 -68801420 - AluSx SINE Alu 0 324 1 2118 107 10 10 chr13 50944457 50944748 -68800150 - AluSx SINE Alu -21 291 1 26 0 0 0 chr13 50945616 50945642 -68799256 + AT_rich Low_complexity Low_complexity 1 26 0 2185 100 17 10 chr13 50946194 50946517 -68798381 - AluSx SINE Alu 0 312 1 209 111 139 0 chr13 50946953 50946989 -68797909 + L2 LINE L2 3267 3307 -6 577 178 31 0 chr13 50947139 50947244 -68797654 + MER5A DNA MER1_type 4 112 -77 653 184 0 92 chr13 50947266 50947418 -68797480 + FLAM_C SINE Alu 1 138 -5 232 379 0 11 chr13 50947583 50947670 -68797228 - L2 LINE L2 -10 3262 3177 422 357 47 8 chr13 50949150 50949279 -68795619 - L2 LINE L2 -5 3267 3134 230 296 56 28 chr13 50951192 50951300 -68793598 + MIR3 SINE MIR 5 115 -93 2348 67 40 0 chr13 50952131 50952430 -68792468 - AluYa5 SINE Alu 0 311 1 444 37 0 0 chr13 50954358 50954412 -68790486 + (CA)n Simple_repeat Simple_repeat 1 54 0 5830 149 17 19 chr13 50954605 50955651 -68789247 - L1PB1 LINE L1 0 6151 5116 2237 127 0 0 chr13 50955651 50955958 -68788940 - AluSx SINE Alu -5 307 1 5830 149 17 19 chr13 50955958 50956803 -68788095 - L1PB1 LINE L1 -1035 5116 4271 185 211 58 0 chr13 50956969 50957021 -68787877 + L2 LINE L2 3257 3311 -2 1171 263 86 10 chr13 50959834 50960453 -68784445 + MER115 DNA AcHobo 1 692 -1 848 211 130 8 chr13 50963536 50963783 -68781115 - MLT1C LTR MaLR -4 463 187 828 219 0 0 chr13 50963823 50963969 -68780929 - FRAM SINE Alu -36 140 1 1747 171 7 7 chr13 50963977 50964276 -68780622 - AluJo SINE Alu -13 299 1 610 194 116 7 chr13 50964284 50964439 -68780459 - MLT1C LTR MaLR -290 177 6 287 318 64 18 chr13 50966252 50966362 -68778536 + L2 LINE L2 3158 3272 0 936 224 92 4 chr13 50966399 50966627 -68778271 + MIR SINE MIR 5 252 -10 195 311 168 49 chr13 50968458 50968744 -68776154 + L2 LINE L2 2327 2646 -668 2568 127 35 24 chr13 50969200 50969626 -68775272 - Tigger2a DNA MER2_type 0 434 4 521 284 111 13 chr13 50970014 50970239 -68774659 + MIR SINE MIR 16 262 0 24 0 0 0 chr13 50970915 50970939 -68773959 + AT_rich Low_complexity Low_complexity 1 24 0 38 68 0 0 chr13 50970948 50971021 -68773877 + AT_rich Low_complexity Low_complexity 1 73 0 774 261 76 83 chr13 50971058 50971453 -68773445 - L2 LINE L2 -5 3308 2917 291 344 5 77 chr13 50972311 50972506 -68772392 + MIR3 SINE MIR 14 194 -14 473 171 0 0 chr13 50973755 50973837 -68771061 + Charlie1 DNA MER1_type 59 140 -2621 * 911 148 60 5 chr13 50973835 50974052 -68770846 + Charlie1 DNA MER1_type 2419 2647 -114 42136 37 4 1 chr13 50974071 50980204 -68764694 - L1PA3 LINE L1 -2 6153 1 227 307 37 32 chr13 50980368 50980557 -68764341 + L1ME4a LINE L1 4802 4991 -1155 692 261 61 48 chr13 50981004 50981224 -68763674 + L1ME4a LINE L1 5518 5747 -374 2004 164 0 3 chr13 50981224 50981523 -68763375 + AluJb SINE Alu 1 298 -14 692 261 61 48 chr13 50981523 50981678 -68763220 + L1ME4a LINE L1 5747 5898 -223 690 287 121 5 chr13 50981824 50982047 -68762851 - MIR SINE MIR -6 256 8 396 321 16 0 chr13 50982048 50982241 -68762657 + L1MC4a LINE L1 3648 3843 -2303 351 318 56 17 chr13 50982690 50982869 -68762029 + L1MC4a LINE L1 5152 5337 -809 49 18 0 0 chr13 50983478 50983534 -68761364 + AT_rich Low_complexity Low_complexity 1 56 0 312 173 27 27 chr13 50983534 50983680 -68761218 + A-rich Low_complexity Low_complexity 1 146 0 51 86 0 0 chr13 50983716 50983844 -68761054 + AT_rich Low_complexity Low_complexity 1 128 0 308 279 101 17 chr13 50984148 50984365 -68760533 + L1MC4a LINE L1 5542 5574 -547 2388 81 0 3 chr13 50984365 50984660 -68760238 + AluSp SINE Alu 1 294 -19 308 279 101 17 chr13 50984660 50984757 -68760141 + L1MC4a LINE L1 5574 5661 -460 2404 97 0 0 chr13 50984922 50985221 -68759677 + AluSg SINE Alu 1 299 -11 22 35 0 0 chr13 50985330 50985359 -68759539 + AT_rich Low_complexity Low_complexity 1 29 0 2226 107 10 0 chr13 50985711 50986011 -68758887 + AluSx SINE Alu 1 303 -9 258 215 31 46 chr13 50986752 50986817 -68758081 - L2 LINE L2 -21 3251 3188 331 294 135 43 chr13 50987438 50987601 -68757297 - MIR SINE MIR -83 179 2 302 246 251 42 chr13 50987841 50988008 -68756890 - L3 LINE CR1 -34 1543 1342 258 424 93 0 chr13 50988028 50988179 -68756719 - L2 LINE L2 -6 3266 3102 323 319 11 0 chr13 50988188 50988282 -68756616 - L3 LINE CR1 -238 1339 1245 26 74 0 0 chr13 50988448 50988502 -68756396 + AT_rich Low_complexity Low_complexity 1 54 0 1438 178 113 106 chr13 50988565 50989103 -68755795 + MLT1F LTR MaLR 1 542 0 1062 139 22 0 chr13 50989266 50989446 -68755452 - L1MA3 LINE L1 0 6305 6122 435 292 111 37 chr13 50989507 50989750 -68755148 - L3 LINE CR1 -732 845 585 964 321 68 44 chr13 50989902 50990811 -68754087 + L1MEd LINE L1 346 1276 -5096 1319 247 72 17 chr13 50990843 50990859 -68754039 + L1MEd LINE L1 1549 1563 -5000 1831 159 4 0 chr13 50990859 50991135 -68753763 - AluJo SINE Alu -30 282 6 1319 247 72 17 chr13 50991135 50991621 -68753277 + L1MEd LINE L1 1563 2235 -4328 1046 119 80 28 chr13 50991624 50991800 -68753098 - AluSg/x SINE Alu 0 312 128 460 97 0 0 chr13 50991801 50991863 -68753035 - Alu SINE Alu -256 62 1 1834 244 42 40 chr13 50991864 50991892 -68753006 + L1MEd LINE L1 2228 2254 -4128 1427 220 48 0 chr13 50991892 50992187 -68752711 + AluJo SINE Alu 1 309 -3 1834 244 42 40 chr13 50992187 50993043 -68751855 + L1MEd LINE L1 2254 3066 -3316 439 233 95 0 chr13 50993055 50993159 -68751739 + FLAM_C SINE Alu 4 121 -191 17602 46 6 9 chr13 50993159 50996135 -68748763 + L1PA5 LINE L1 3176 6152 -2 439 233 95 0 chr13 50996135 50996146 -68748752 + FLAM_C SINE Alu 121 130 -182 2250 263 43 15 chr13 50996147 50997008 -68747890 + L1MEd LINE L1 3194 4078 -2304 1429 138 39 4 chr13 50997018 50997272 -68747626 + L1MB3 LINE L1 5641 5903 -280 1620 123 104 4 chr13 50997272 50997523 -68747375 + AluSx SINE Alu 1 276 -36 292 91 0 0 chr13 50997662 50997706 -68747192 + AluSx SINE Alu 254 297 -4 1346 143 70 11 chr13 50997706 50997978 -68746920 + L1MB3 LINE L1 5894 6181 -2 2735 160 57 51 chr13 50998076 50998112 -68746786 + L1MB7 LINE L1 5495 5529 -655 2200 98 0 7 chr13 50998112 50998437 -68746461 - AluSq SINE Alu 0 323 1 2735 160 57 51 chr13 50998437 50998588 -68746310 + L1MB7 LINE L1 5529 5678 -506 6304 112 84 26 chr13 50998588 50999748 -68745150 - Tigger3b DNA MER2_type -1 1230 3 2735 160 57 51 chr13 50999748 51000244 -68744654 + L1MB7 LINE L1 5678 6184 0 2776 0 0 3 chr13 51000254 51000556 -68744342 + AluYa5 SINE Alu 1 301 -10 1339 214 86 16 chr13 51000564 51000994 -68743904 + L1M4 LINE L1 3656 4115 -2031 336 293 102 20 chr13 51001325 51001472 -68743426 + MIR3 SINE MIR 19 177 -31 393 325 8 0 chr13 51002358 51002475 -68742423 + MIR3 SINE MIR 81 198 -10 402 21 0 0 chr13 51002541 51002588 -68742310 + (CA)n Simple_repeat Simple_repeat 1 47 0 224 156 0 172 chr13 51004537 51004601 -68740297 - MIR3 SINE MIR -11 197 145 1435 172 12 16 chr13 51004601 51004922 -68739976 - MLT1A1 LTR MaLR 0 365 12 261 0 0 0 chr13 51004927 51004956 -68739942 + (TC)n Simple_repeat Simple_repeat 2 30 0 192 40 0 0 chr13 51004960 51004985 -68739913 + (CA)n Simple_repeat Simple_repeat 1 25 0 516 210 34 0 chr13 51004986 51005105 -68739793 + L1MA9 LINE L1 6168 6290 -22 431 296 25 26 chr13 51005119 51005279 -68739619 - MIR3 SINE MIR -48 160 2 382 326 51 20 chr13 51006538 51006741 -68738157 - MIR3 SINE MIR -46 216 12 462 278 57 43 chr13 51007106 51007458 -68737440 - L1MC5 LINE L1 -129 7832 7476 601 221 34 55 chr13 51007789 51008024 -68736874 - L1MC5 LINE L1 -737 7224 6995 525 216 20 103 chr13 51008141 51008207 -68736691 - L1MC4 LINE L1 -1036 7006 6936 2319 96 6 13 chr13 51008207 51008521 -68736377 - AluSq SINE Alu -1 312 1 1952 141 34 3 chr13 51008531 51008857 -68736041 - L1MC1 LINE L1 0 6333 5998 525 216 20 103 chr13 51008857 51008983 -68735915 - L1MC4 LINE L1 -1115 6927 6820 343 346 54 48 chr13 51008995 51009290 -68735608 - L1MC4a LINE L1 -1176 6632 6336 660 148 111 19 chr13 51009454 51009616 -68735282 - MER68 LTR ERV1 -385 177 1 235 241 105 8 chr13 51009655 51009788 -68735110 - L1M4 LINE L1 -803 5343 5198 491 291 99 50 chr13 51009802 51010468 -68734430 - L1M4 LINE L1 -1031 5115 4417 252 330 84 82 chr13 51011972 51012666 -68732232 + L2 LINE L2 1093 1791 -1523 2023 121 15 15 chr13 51012666 51013005 -68731893 - L1MB3 LINE L1 -7 6176 5838 252 330 84 82 chr13 51013005 51013329 -68731569 + L2 LINE L2 1791 2113 -1201 293 314 55 92 chr13 51013379 51013761 -68731137 - L2 LINE L2 -93 3179 2812 2086 121 38 0 chr13 51014986 51015275 -68729623 - AluSx SINE Alu -12 300 1 180 322 34 17 chr13 51015664 51015723 -68729175 - L2 LINE L2 -57 3256 3197 2258 117 0 3 chr13 51015893 51016192 -68728706 - AluSx SINE Alu -14 298 1 557 343 96 10 chr13 51016314 51016722 -68728176 - L2 LINE L2 -510 2804 2362 21 57 0 0 chr13 51017354 51017389 -68727509 + AT_rich Low_complexity Low_complexity 1 35 0 756 180 11 60 chr13 51017395 51017578 -68727320 - L1MB4 LINE L1 0 6180 6007 314 336 149 24 chr13 51018116 51018324 -68726574 - L2 LINE L2 -9 3263 3030 357 244 33 0 chr13 51018473 51018563 -68726335 + L2 LINE L2 3171 3263 -9 1103 229 29 12 chr13 51019006 51019246 -68725652 - MIR SINE MIR 0 262 19 2414 83 0 0 chr13 51019345 51019646 -68725252 - AluSg SINE Alu -9 301 1 289 229 16 0 chr13 51020078 51020139 -68724759 - MIR SINE MIR -24 238 177 486 249 266 33 chr13 51020283 51020524 -68724374 - L2 LINE L2 -21 3292 2996 22 35 0 0 chr13 51021010 51021039 -68723859 + AT_rich Low_complexity Low_complexity 1 29 0 233 175 0 0 chr13 51021249 51021289 -68723609 - MIR SINE MIR -67 195 156 245 319 14 0 chr13 51021336 51021408 -68723490 - MIR SINE MIR -103 159 87 2405 81 0 0 chr13 51023288 51023584 -68721314 + AluSg SINE Alu 1 296 -14 381 319 29 48 chr13 51026127 51026337 -68718561 + MIR SINE MIR 14 219 -43 407 273 36 27 chr13 51026467 51026577 -68718321 - L2 LINE L2 0 3272 3162 905 203 17 11 chr13 51027264 51027441 -68717457 + MER45A DNA AcHobo 1 178 0 558 231 98 69 chr13 51028135 51028481 -68716417 - LTR37A LTR ERV1 -52 374 19 234 0 0 0 chr13 51028593 51028619 -68716279 + (A)n Simple_repeat Simple_repeat 1 26 0 1794 108 112 22 chr13 51028818 51029095 -68715803 - AluSg SINE Alu 0 310 9 1258 234 80 92 chr13 51029100 51029859 -68715039 - MER31-int LTR ERV1 -860 4076 3327 1886 164 4 0 chr13 51030398 51030679 -68714219 - AluJb SINE Alu -25 287 6 2264 178 58 17 chr13 51030827 51031306 -68713592 + LTR10B LTR ERV1 7 505 0 21 0 0 0 chr13 51031423 51031444 -68713454 + AT_rich Low_complexity Low_complexity 1 21 0 1690 183 37 12 chr13 51031790 51032199 -68712699 + Charlie1b DNA MER1_type 105 523 0 417 197 49 8 chr13 51033774 51033896 -68711002 - LTR37A LTR ERV1 -2 424 298 429 272 107 65 chr13 51035224 51035583 -68709315 + L1MCa LINE L1 2189 3691 -2735 276 258 76 38 chr13 51037165 51037297 -68707601 - L1ME4a LINE L1 -30 6091 5955 270 56 0 0 chr13 51037457 51037493 -68707405 + (TG)n Simple_repeat Simple_repeat 2 37 0 1990 108 10 26 chr13 51037512 51037819 -68707079 + AluSx SINE Alu 1 302 -10 379 267 58 61 chr13 51038133 51038433 -68706465 - L1PA8A LINE L1 -564 5567 5267 347 197 92 0 chr13 51038862 51038938 -68705960 + L2 LINE L2 3188 3270 -2 272 316 41 0 chr13 51040980 51041078 -68703820 - MIR3 SINE MIR -11 197 96 1060 167 0 12 chr13 51042111 51042279 -68702619 + FRAM SINE Alu 1 166 0 1651 156 14 0 chr13 51042608 51042890 -68702008 + AluJb SINE Alu 1 286 -26 1635 172 13 1 chr13 51044490 51044779 -68700119 - MER1B DNA MER1_type 0 339 3 199 175 0 25 chr13 51046871 51046911 -68697987 - MIR3 SINE MIR -9 199 161 1675 168 17 0 chr13 51047349 51047641 -68697257 + AluJo SINE Alu 1 297 -15 285 335 28 37 chr13 51048146 51048361 -68696537 - L2 LINE L2 -194 3078 2866 21 0 0 0 chr13 51050392 51050413 -68694485 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 51051972 51051993 -68692905 + AT_rich Low_complexity Low_complexity 1 21 0 187 281 141 0 chr13 51052698 51052762 -68692136 - MIR3 SINE MIR -10 198 126 472 194 39 54 chr13 51053683 51053812 -68691086 + MIR SINE MIR 103 229 -33 217 355 56 0 chr13 51053853 51053960 -68690938 - MIR3 SINE MIR -54 154 42 301 323 21 0 chr13 51054865 51054958 -68689940 + L2 LINE L2 3161 3255 -17 1294 98 25 102 chr13 51054970 51055205 -68689693 + AluSq SINE Alu 10 226 -87 1908 151 46 14 chr13 51055742 51056092 -68688806 - MER46B DNA MER2_type 0 236 1 349 159 29 14 chr13 51056724 51056793 -68688105 - MLT1D LTR MaLR -11 494 425 957 217 35 28 chr13 51058528 51058942 -68685956 - MLT1D LTR MaLR -64 441 1 335 281 56 75 chr13 51059755 51059915 -68684983 + HAL1b LINE L1 1186 1342 -6 286 215 111 67 chr13 51060085 51060220 -68684678 + L1ME4a LINE L1 5964 6104 -17 245 283 22 0 chr13 51060409 51060501 -68684397 + MIR SINE MIR 7 100 -162 341 267 86 9 chr13 51061175 51061280 -68683618 + L1MCa LINE L1 1958 2070 -4356 223 200 44 0 chr13 51061306 51061351 -68683547 - MIR SINE MIR -86 122 76 2167 96 0 0 chr13 51062223 51062535 -68682363 + AluSx SINE Alu 3 314 0 469 291 233 22 chr13 51063687 51064905 -68679993 - L2 LINE L2 -1 3312 1836 1208 226 69 67 chr13 51065847 51066326 -68678572 - L1ME1 LINE L1 -50 6116 5637 328 286 111 8 chr13 51066338 51066464 -68678434 - MIR SINE MIR -74 188 50 223 264 243 0 chr13 51066591 51066739 -68678159 - L2 LINE L2 -167 3105 2922 189 304 18 18 chr13 51067210 51067266 -68677632 + L2 LINE L2 3204 3259 -13 2124 117 0 0 chr13 51067272 51067562 -68677336 + AluSx SINE Alu 1 290 -22 369 213 39 87 chr13 51068006 51068133 -68676765 + MLT1H LTR MaLR 429 549 0 292 252 205 16 chr13 51068213 51068340 -68676558 + MIR SINE MIR 111 261 -1 380 256 84 78 chr13 51069840 51070031 -68674867 + MIR SINE MIR 15 206 -56 37 39 0 0 chr13 51070031 51070082 -68674816 + AT_rich Low_complexity Low_complexity 1 51 0 321 273 72 36 chr13 51070082 51070221 -68674677 + L1MCa LINE L1 1948 2091 -4335 * 334 187 40 53 chr13 51070182 51070257 -68674641 - L1MCa LINE L1 -4361 2065 1992 * 345 245 19 57 chr13 51070198 51070304 -68674594 + L1MC4 LINE L1 6613 6714 -1328 901 210 60 0 chr13 51070371 51070538 -68674360 + MER45A DNA AcHobo 2 178 0 1689 144 3 52 chr13 51070895 51071201 -68673697 + AluJo SINE Alu 3 293 -19 885 183 21 31 chr13 51071687 51071878 -68673020 - MER5A DNA MER1_type 0 189 1 1118 151 132 4 chr13 51072695 51072953 -68671945 - MER33 DNA MER1_type 0 324 34 327 266 133 21 chr13 51073649 51073792 -68671106 - HAL1b LINE L1 -3 1345 1187 23 33 0 0 chr13 51073798 51073828 -68671070 + AT_rich Low_complexity Low_complexity 1 30 0 240 191 63 16 chr13 51073836 51073899 -68670999 - L1MC/D LINE L1 -1884 5924 5859 4846 144 29 39 chr13 51073936 51074716 -68670182 - L1MB1 LINE L1 -1 6167 5396 2010 121 0 22 chr13 51074716 51075029 -68669869 - AluSx SINE Alu -6 306 1 4846 144 29 39 chr13 51075029 51075149 -68669749 - L1MB1 LINE L1 -772 5396 5276 501 143 0 12 chr13 51076962 51077046 -68667852 + L1MC3 LINE L1 7322 7404 -381 192 200 0 0 chr13 51077707 51077757 -68667141 + (TAA)n Simple_repeat Simple_repeat 1 50 0 717 178 113 11 chr13 51077846 51078031 -68666867 - LTR33A LTR ERVL -26 497 294 340 261 0 11 chr13 51078062 51078150 -68666748 - LTR33 LTR ERVL -317 204 118 360 275 55 0 chr13 51078399 51078508 -68666390 - MIR SINE MIR -113 149 35 802 249 12 0 chr13 51079504 51079669 -68665229 + MER45A DNA AcHobo 12 178 0 343 200 352 8 chr13 51080552 51080677 -68664221 + MER5B DNA MER1_type 10 177 -1 696 264 7 0 chr13 51082507 51082662 -68662236 + MER91B DNA MER1_type 24 179 -11 696 260 73 5 chr13 51083313 51083505 -68661393 + MIR SINE MIR 43 247 -15 2135 94 0 3 chr13 51083524 51083811 -68661087 - AluSx SINE Alu -24 288 3 342 0 0 0 chr13 51084495 51084533 -68660365 + (CA)n Simple_repeat Simple_repeat 1 38 0 453 235 206 7 chr13 51084590 51084726 -68660172 + MER5A DNA MER1_type 11 173 -16 554 260 20 14 chr13 51085566 51085712 -68659186 + MER5B DNA MER1_type 29 175 -3 30 0 0 0 chr13 51086331 51086361 -68658537 + GC_rich Low_complexity Low_complexity 1 30 0 448 284 147 0 chr13 51087781 51087978 -68656920 + MIR SINE MIR 31 256 -6 273 214 0 0 chr13 51088260 51088316 -68656582 + MIR SINE MIR 36 91 -117 700 284 116 4 chr13 51088324 51088549 -68656349 - MIR SINE MIR -10 252 3 435 259 19 9 chr13 51088555 51088663 -68656235 + MIR3 SINE MIR 94 202 -6 237 65 0 0 chr13 51088966 51088997 -68655901 + (CA)n Simple_repeat Simple_repeat 2 32 0 277 293 86 21 chr13 51090270 51090416 -68654482 + MIR SINE MIR 22 191 -68 206 240 120 0 chr13 51090424 51090474 -68654424 - L2 LINE L2 -1 3312 3257 * 510 263 46 13 chr13 51090452 51090604 -68654294 - MIR SINE MIR -93 169 13 4165 150 27 19 chr13 51090975 51091720 -68653178 - L1MB3 LINE L1 -2 6181 5431 1948 68 80 0 chr13 51091884 51092133 -68652765 - AluY SINE Alu -16 295 27 307 289 49 88 chr13 51092549 51092620 -68652278 + L1ME4a LINE L1 5847 5919 -202 2524 78 0 3 chr13 51092620 51092928 -68651970 - AluSc SINE Alu -2 307 1 307 289 49 88 chr13 51092928 51093140 -68651758 + L1ME4a LINE L1 5919 6119 -2 694 254 58 55 chr13 51093234 51093631 -68651267 - LTR16A1 LTR ERVL 0 457 60 1307 254 6 3 chr13 51094373 51094703 -68650195 + LTR53 LTR ERVL 189 519 0 1519 171 6 105 chr13 51094885 51095219 -68649679 + AluJo SINE Alu 1 301 -1 217 247 137 0 chr13 51095951 51096024 -68648874 - MER5A DNA MER1_type -105 84 2 557 169 0 0 chr13 51096780 51096863 -68648035 - FRAM SINE Alu -18 158 76 291 71 0 0 chr13 51098971 51099013 -68645885 + (TG)n Simple_repeat Simple_repeat 1 42 0 209 239 84 42 chr13 51100857 51100928 -68643970 - MIR SINE MIR -36 226 153 428 211 55 16 chr13 51100967 51101095 -68643803 + L1ME4a LINE L1 5989 6121 0 383 231 13 0 chr13 51101165 51101243 -68643655 - MIR SINE MIR -111 151 73 186 358 11 32 chr13 51101998 51102093 -68642805 + MIR SINE MIR 154 246 -16 616 222 8 0 chr13 51102239 51102365 -68642533 - MER94 DNA DNA -2 132 6 252 59 0 0 chr13 51103986 51104020 -68640878 + (A)n Simple_repeat Simple_repeat 1 34 0 1844 151 7 20 chr13 51105397 51105695 -68639203 - AluJb SINE Alu -18 294 1 410 260 38 18 chr13 51105787 51105961 -68638937 + MLT1I LTR MaLR 279 409 0 768 144 25 0 chr13 51106669 51106829 -68638069 - L1MB4 LINE L1 0 6180 6017 2220 116 0 0 chr13 51106988 51107289 -68637609 + AluSx SINE Alu 1 301 -11 961 140 13 0 chr13 51107675 51107825 -68637073 - L1MB5 LINE L1 -13 6161 6010 1537 125 139 52 chr13 51107939 51108226 -68636672 - AluJo SINE Alu 0 312 1 381 312 29 47 chr13 51108602 51108772 -68636126 + MER5A DNA MER1_type 23 189 0 399 291 57 29 chr13 51109564 51109739 -68635159 + MIR3 SINE MIR 20 199 -9 686 246 73 103 chr13 51109993 51110537 -68634361 + MLT1K LTR MaLR 29 556 -32 869 255 12 9 chr13 51110932 51111454 -68633444 + MER45B DNA AcHobo 57 707 -333 1059 216 128 7 chr13 51111562 51111844 -68633054 + MER34 LTR ERV1 227 542 0 481 305 34 56 chr13 51111937 51112170 -68632728 + MIR SINE MIR 34 261 -1 1791 174 7 13 chr13 51112697 51112996 -68631902 + AluJo SINE Alu 3 299 -13 320 279 133 34 chr13 51114515 51114748 -68630150 - L2 LINE L2 -158 3114 2859 222 378 61 0 chr13 51115078 51115242 -68629656 - L2 LINE L2 -815 2499 2326 2363 81 7 16 chr13 51116770 51117079 -68627819 - AluSc SINE Alu -3 306 1 686 243 151 61 chr13 51117400 51117592 -68627306 - L1MC4 LINE L1 -130 7678 7505 1777 166 138 9 chr13 51117592 51117941 -68626957 + MSTD LTR MaLR 1 394 -2 686 243 151 61 chr13 51117941 51118288 -68626610 - L1MC4 LINE L1 -303 7505 7121 291 316 67 31 chr13 51118316 51118541 -68626357 - L2 LINE L2 -337 2977 2745 343 194 15 0 chr13 51119185 51119252 -68625646 - L2 LINE L2 -18 3295 3228 279 262 36 0 chr13 51120288 51120372 -68624526 - MIR SINE MIR -117 145 59 557 309 60 9 chr13 51120383 51120600 -68624298 - MIR SINE MIR -2 260 33 426 239 74 1 chr13 51121616 51121720 -68623178 - MIR SINE MIR -62 146 37 483 146 73 31 chr13 51121901 51122036 -68622862 - MIR SINE MIR -62 146 10 184 250 25 0 chr13 51122250 51122290 -68622608 + L2 LINE L2 3226 3266 -6 359 302 47 19 chr13 51124543 51124758 -68620140 - L1ME LINE L1 -594 5568 5348 786 221 101 5 chr13 51125466 51125665 -68619233 + MER20 DNA MER1_type 1 218 -1 240 214 0 0 chr13 51125758 51125814 -68619084 + (TA)n Simple_repeat Simple_repeat 2 57 0 423 305 55 47 chr13 51127000 51127256 -68617642 + L3 LINE CR1 1171 1428 -149 425 285 60 6 chr13 51127294 51127472 -68617426 - MER5A DNA MER1_type -1 177 1 245 258 144 0 chr13 51127572 51127669 -68617229 - MER96 DNA MER1_type? -8 167 57 3343 95 169 40 chr13 51127807 51128772 -68616126 + Tigger3b DNA MER2_type 1 1089 -143 1698 160 72 0 chr13 51128763 51129056 -68615842 + MER1B DNA MER1_type 26 339 0 * 673 216 0 0 chr13 51129056 51129178 -68615720 + Tigger3b DNA MER2_type 1108 1229 -2 379 278 8 24 chr13 51129642 51129768 -68615130 - LTR33A LTR ERVL -57 466 343 293 312 159 7 chr13 51129806 51129944 -68614954 - MIR SINE MIR -98 164 6 1585 182 82 0 chr13 51130740 51131069 -68613829 + L1MB2 LINE L1 5815 6170 -1 829 188 61 18 chr13 51131496 51131661 -68613237 + AluJo SINE Alu 5 176 -136 263 240 0 27 chr13 51131678 51131753 -68613145 - L1M4 LINE L1 -1526 4620 4548 34 24 0 0 chr13 51132092 51132133 -68612765 + AT_rich Low_complexity Low_complexity 1 41 0 634 358 93 34 chr13 51132163 51132602 -68612296 - L1MC4a LINE L1 -1127 6681 6217 1578 189 4 21 chr13 51132642 51132991 -68611907 + AluJo SINE Alu 32 375 0 2202 261 18 8 chr13 51133015 51133070 -68611828 - L1MC4a LINE L1 -1926 5882 5829 2372 119 0 0 chr13 51133070 51133380 -68611518 - AluSg SINE Alu 0 310 1 2202 261 18 8 chr13 51133380 51133932 -68610966 - L1MC4a LINE L1 -1979 5829 5269 260 246 82 0 chr13 51133937 51133998 -68610900 - L2 LINE L2 -57 3256 3191 2279 73 13 13 chr13 51134155 51134455 -68610443 + AluSq SINE Alu 1 300 -13 2214 156 62 29 chr13 51134457 51134682 -68610216 - Tigger2a DNA MER2_type -2274 434 187 2293 118 0 10 chr13 51134682 51134996 -68609902 + AluSx SINE Alu 1 311 -1 2214 156 62 29 chr13 51134996 51135188 -68609710 - Tigger2a DNA MER2_type -2521 187 3 741 216 115 21 chr13 51135246 51135533 -68609365 + L1ME4a LINE L1 5806 6119 -2 793 258 57 13 chr13 51136134 51136363 -68608535 + MIR SINE MIR 21 259 -3 305 289 59 40 chr13 51137079 51137453 -68607445 + L1MEd LINE L1 830 1210 -4909 2313 190 75 105 chr13 51137471 51138186 -68606712 - LTR8A LTR ERV1 0 727 34 331 253 141 32 chr13 51138221 51138470 -68606428 + L1MEd LINE L1 1280 1555 -4755 232 324 80 6 chr13 51138803 51138979 -68605919 + L1MEd LINE L1 1543 1731 -4579 2676 244 63 24 chr13 51138990 51140171 -68604727 + L1MEd LINE L1 1796 2986 -3143 1406 177 44 51 chr13 51140171 51140499 -68604399 - MER61B LTR ERV1 0 425 2 2942 196 51 111 chr13 51140603 51141063 -68603835 + L1M4 LINE L1 328 814 -5728 417 20 0 0 chr13 51141063 51141113 -68603785 + (CA)n Simple_repeat Simple_repeat 2 51 0 2942 196 51 111 chr13 51141113 51141454 -68603444 + L1M4 LINE L1 814 1174 -5368 1918 121 7 36 chr13 51141454 51141761 -68603137 - AluJo SINE Alu -14 298 1 2942 196 51 111 chr13 51141761 51141917 -68602981 + L1M4 LINE L1 1174 1226 -5316 1752 161 23 20 chr13 51141917 51142216 -68602682 + AluJb SINE Alu 1 300 -12 2942 196 51 111 chr13 51142216 51142260 -68602638 + L1M4 LINE L1 1226 1271 -5271 189 171 0 0 chr13 51142277 51142312 -68602586 + (TA)n Simple_repeat Simple_repeat 1 35 0 304 218 35 46 chr13 51142327 51142414 -68602484 + L1MC4 LINE L1 6617 6702 -1340 2019 176 44 63 chr13 51142497 51142975 -68601923 + L1MA9 LINE L1 5741 6209 -103 1787 199 73 11 chr13 51142996 51143433 -68601465 + L1M4 LINE L1 1307 1770 -4876 183 352 0 14 chr13 51144092 51144163 -68600735 - L2 LINE L2 -3 3269 3200 200 295 13 0 chr13 51145110 51145188 -68599710 - L2 LINE L2 -829 2485 2407 384 59 0 0 chr13 51145218 51145269 -68599629 + (CA)n Simple_repeat Simple_repeat 1 51 0 291 211 32 11 chr13 51145621 51145716 -68599182 + CT-rich Low_complexity Low_complexity 1 97 0 529 236 106 13 chr13 51146008 51146330 -68598568 - L1ME2 LINE L1 -213 5951 5584 291 338 12 23 chr13 51148739 51148938 -68595960 - MIR SINE MIR -50 212 20 243 277 69 30 chr13 51150649 51150750 -68594148 - MIR3 SINE MIR -6 202 98 2446 74 0 0 chr13 51151050 51151346 -68593552 - AluSg SINE Alu -14 296 1 283 269 43 21 chr13 51151658 51151751 -68593147 + MER65A LTR ERV1 1 95 -350 1509 287 88 20 chr13 51152040 51152598 -68592300 + HAL1 LINE L1 5 600 -1907 2305 181 102 40 chr13 51152624 51152754 -68592144 + MLT1F LTR MaLR 7 128 -414 1898 56 0 0 chr13 51152754 51152968 -68591930 - AluY SINE Alu -14 297 84 2305 181 102 40 chr13 51152968 51153339 -68591559 + MLT1F LTR MaLR 128 539 -3 534 16 0 0 chr13 51153347 51153410 -68591488 + (CA)n Simple_repeat Simple_repeat 2 64 0 4101 236 133 55 chr13 51153413 51155056 -68589842 + HAL1 LINE L1 567 2336 -171 333 263 0 0 chr13 51155057 51155133 -68589765 - MER5A DNA MER1_type 0 189 114 300 422 14 0 chr13 51155130 51155348 -68589550 + L2 LINE L2 2863 3083 -189 * 1133 292 113 27 chr13 51155440 51155926 -68588972 + LTR67 LTR ERVL 18 545 -12 276 306 28 46 chr13 51155928 51156036 -68588862 + L2 LINE L2 3166 3271 -1 802 226 80 19 chr13 51156679 51156891 -68588007 - MIR SINE MIR -18 244 20 351 209 58 0 chr13 51158895 51158981 -68585917 + L2 LINE L2 3169 3259 -13 1913 138 33 74 chr13 51159493 51159710 -68585188 - THE1C LTR MaLR 0 375 151 2122 108 0 0 chr13 51159710 51159989 -68584909 + AluY SINE Alu 1 279 -32 195 42 0 0 chr13 51159991 51160015 -68584883 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1913 138 33 74 chr13 51160015 51160185 -68584713 - THE1C LTR MaLR -225 150 1 189 0 0 0 chr13 51161838 51161859 -68583039 + (A)n Simple_repeat Simple_repeat 1 21 0 1055 82 0 7 chr13 51162368 51162514 -68582384 + L1PB1 LINE L1 6005 6149 -2 207 375 0 0 chr13 51162579 51162667 -68582231 + L3b LINE CR1 1172 1259 -324 2041 189 17 3 chr13 51163107 51163467 -68581431 + MLT1A1 LTR MaLR 1 365 0 192 264 0 0 chr13 51163705 51163758 -68581140 - L2 LINE L2 0 3313 3261 254 72 29 43 chr13 51164284 51164353 -68580545 + (TAAAA)n Simple_repeat Simple_repeat 2 69 0 750 258 149 69 chr13 51164376 51165333 -68579565 - LTR27 LTR ERV1 0 1755 7 739 286 36 0 chr13 51166211 51166435 -68578463 + MIR SINE MIR 29 260 -2 302 229 60 0 chr13 51166432 51166515 -68578383 + MIR SINE MIR 104 191 -71 * 377 272 39 0 chr13 51166601 51166704 -68578194 + MLT1L LTR MaLR 148 254 -361 2054 129 63 24 chr13 51166809 51167172 -68577726 - THE1C LTR MaLR 0 375 1 1065 234 8 0 chr13 51167881 51168129 -68576769 - MIR SINE MIR 0 262 13 2158 216 30 0 chr13 51168341 51168777 -68576121 + MER110 LTR ERV1 43 491 0 2397 87 0 3 chr13 51169609 51169908 -68574990 - AluSq SINE Alu -15 298 1 2421 97 0 3 chr13 51170196 51170507 -68574391 - AluSg SINE Alu 0 310 1 484 280 35 67 chr13 51170518 51170800 -68574098 - L1ME LINE L1 -298 5823 5551 1942 153 40 20 chr13 51170830 51171176 -68573722 + MLT1B LTR MaLR 1 353 -37 2284 107 3 0 chr13 51171205 51171503 -68573395 - AluSp SINE Alu -14 299 1 3050 108 9 14 chr13 51171754 51172188 -68572710 + MSTB1 LTR MaLR 1 432 0 737 88 20 0 chr13 51172217 51172319 -68572579 + LTR54B LTR ERV1 1 104 -394 710 217 53 0 chr13 51172322 51172511 -68572387 + LTR54 LTR ERV1 305 503 -7 317 263 97 59 chr13 51174048 51174234 -68570664 + LTR33A LTR ERVL 73 265 -258 503 208 167 46 chr13 51174309 51174525 -68570373 + LTR33A LTR ERVL 254 515 -6 453 266 121 85 chr13 51175701 51176066 -68568832 - MLT1K LTR MaLR -27 561 184 3976 101 2 0 chr13 51176244 51176770 -68568128 - MER1A DNA MER1_type 0 527 1 422 269 45 32 chr13 51178342 51178498 -68566400 + MER5B DNA MER1_type 1 158 -20 1372 230 53 98 chr13 51178508 51178783 -68566115 - LTR40a LTR ERVL -50 469 183 1591 172 92 0 chr13 51178783 51179056 -68565842 - AluJo SINE Alu -14 298 1 1372 230 53 98 chr13 51179056 51179187 -68565711 - LTR40a LTR ERVL -336 183 48 2367 107 0 0 chr13 51179187 51179487 -68565411 + AluSx SINE Alu 1 300 -12 2175 103 17 3 chr13 51179488 51179800 -68565098 + AluSc SINE Alu 1 309 0 1372 230 53 98 chr13 51179800 51179881 -68565017 - LTR40a LTR ERVL -470 49 1 4323 177 56 60 chr13 51180616 51180859 -68564039 + L1MB7 LINE L1 4190 4433 -1751 378 77 0 0 chr13 51180859 51180911 -68563987 + L1MA5 LINE L1 6246 6297 -3 4323 177 56 60 chr13 51180911 51182687 -68562211 + L1MB7 LINE L1 4433 6179 -5 229 303 62 56 chr13 51183505 51183700 -68561198 - L2 LINE L2 -1294 2020 1825 1316 209 18 33 chr13 51184071 51184401 -68560497 + MLT1F LTR MaLR 218 542 0 532 239 96 32 chr13 51184402 51184590 -68560308 - LTR16A1 LTR ERVL -254 203 4 342 0 0 0 chr13 51185600 51185638 -68559260 + (TG)n Simple_repeat Simple_repeat 2 39 0 273 167 0 0 chr13 51185851 51185905 -68558993 + (ATG)n Simple_repeat Simple_repeat 3 56 0 230 93 0 23 chr13 51186066 51186109 -68558789 + (ATG)n Simple_repeat Simple_repeat 3 44 0 1033 164 102 58 chr13 51186280 51186506 -68558392 + MER46A DNA MER2_type 1 236 0 857 224 52 14 chr13 51186569 51186779 -68558119 - MER20 DNA MER1_type -1 218 1 238 266 148 8 chr13 51188071 51188199 -68556699 + MIR SINE MIR 117 262 0 397 268 200 0 chr13 51188652 51188842 -68556056 + MLT1H LTR MaLR 1 228 -321 2708 191 16 29 chr13 51188925 51189479 -68555419 + MER74A LTR ERVL 3 549 -9 383 187 244 24 chr13 51192628 51192751 -68552147 + MLT1H LTR MaLR 396 545 -4 182 200 29 0 chr13 51193052 51193087 -68551811 + MIR SINE MIR 207 242 -20 655 275 171 21 chr13 51193399 51193935 -68550963 + L2 LINE L2 2689 3312 -1 224 370 14 0 chr13 51194425 51194498 -68550400 + L2 LINE L2 3199 3272 0 307 298 26 46 chr13 51195908 51196059 -68548839 - MIR SINE MIR -55 207 60 191 192 19 19 chr13 51196366 51196418 -68548480 + MER5A DNA MER1_type 4 55 -134 229 250 67 0 chr13 51196525 51196585 -68548313 + MIR SINE MIR 53 116 -146 1828 241 141 23 chr13 51196593 51197457 -68547441 - MER69B DNA AcHobo -1308 1218 201 2268 94 0 7 chr13 51197457 51197755 -68547143 + AluSc SINE Alu 1 296 -13 1828 241 141 23 chr13 51197755 51197954 -68546944 - MER69B DNA AcHobo -2325 201 27 293 276 51 83 chr13 51197994 51198150 -68546748 + MIR SINE MIR 111 261 -1 292 221 55 102 chr13 51199319 51199446 -68545452 + MIR3 SINE MIR 63 183 -25 1789 158 3 70 chr13 51200285 51200613 -68544285 - AluJb SINE Alu -6 306 1 306 204 68 11 chr13 51200940 51201028 -68543870 - L1ME4a LINE L1 -59 6062 5970 335 333 97 46 chr13 51201216 51201453 -68543445 - L1ME4a LINE L1 -269 5901 5653 189 256 132 70 chr13 51201458 51201587 -68543311 + L2 LINE L2 3130 3266 -47 303 175 0 0 chr13 51201596 51201653 -68543245 + GA-rich Low_complexity Low_complexity 2 58 0 187 290 0 0 chr13 51202093 51202155 -68542743 + L2 LINE L2 2694 2755 -559 351 282 91 64 chr13 51202324 51202544 -68542354 + L2 LINE L2 3077 3302 -11 255 61 0 0 chr13 51203570 51203603 -68541295 + (TG)n Simple_repeat Simple_repeat 2 34 0 579 171 0 27 chr13 51204086 51204197 -68540701 - AluJb SINE Alu -1 311 204 1987 194 97 0 chr13 51204252 51204706 -68540192 - MLT1D LTR MaLR 0 505 8 296 289 11 11 chr13 51205283 51205373 -68539525 + GA-rich Low_complexity Low_complexity 2 91 0 396 155 0 0 chr13 51205373 51205444 -68539454 + G-rich Low_complexity Low_complexity 4 74 0 870 119 0 0 chr13 51205949 51206075 -68538823 + FLAM_C SINE Alu 12 137 -6 255 217 14 14 chr13 51207160 51207229 -68537669 + (CA)n Simple_repeat Simple_repeat 2 70 0 437 154 65 14 chr13 51207555 51207839 -68537059 + (TG)n Simple_repeat Simple_repeat 1 298 0 220 180 0 33 chr13 51208268 51208329 -68536569 + G-rich Low_complexity Low_complexity 4 62 0 318 241 12 0 chr13 51208479 51208562 -68536336 + L1MA8 LINE L1 6208 6291 0 415 287 181 37 chr13 51209465 51209681 -68535217 - MIR SINE MIR 0 262 16 611 271 0 7 chr13 51210006 51210150 -68534748 - MIR SINE MIR -8 254 112 2256 117 0 0 chr13 51210582 51210872 -68534026 + AluSc SINE Alu 1 290 -19 201 300 193 20 chr13 51211337 51211487 -68533411 + MIR SINE MIR 8 183 -79 31 68 0 0 chr13 51212495 51212554 -68532344 + AT_rich Low_complexity Low_complexity 1 59 0 3659 67 11 60 chr13 51212782 51213316 -68531582 + L1PA7 LINE L1 5647 6154 0 624 206 16 0 chr13 51213702 51213828 -68531070 - MER94 DNA DNA -1 133 6 22 35 0 0 chr13 51214441 51214470 -68530428 + AT_rich Low_complexity Low_complexity 1 29 0 528 293 48 12 chr13 51214928 51215095 -68529803 + MIR SINE MIR 76 248 -14 221 182 36 18 chr13 51216880 51216935 -68527963 + L2 LINE L2 3214 3269 -3 1765 186 10 10 chr13 51218186 51218492 -68526406 - AluJo SINE Alu -6 306 1 204 274 91 70 chr13 51219531 51219717 -68525181 + L2 LINE L2 2580 2769 -545 503 258 107 22 chr13 51220934 51221159 -68523739 + L1ME4a LINE L1 5858 6101 -20 184 302 0 0 chr13 51221168 51221211 -68523687 + MIR SINE MIR 218 260 -2 2396 76 3 0 chr13 51221666 51221957 -68522941 - AluSp SINE Alu -2 311 20 2022 114 29 16 chr13 51222121 51222427 -68522471 + AluSq SINE Alu 4 313 0 186 305 60 109 chr13 51226831 51227215 -68517683 + L2 LINE L2 2612 2976 -338 192 358 15 0 chr13 51227473 51227540 -68517358 + L2 LINE L2 3245 3312 -1 801 266 11 0 chr13 51227671 51227848 -68517050 + MIR SINE MIR 33 211 -51 314 264 27 88 chr13 51228528 51228676 -68516222 + MIR SINE MIR 123 261 -1 375 276 129 45 chr13 51228704 51229106 -68515792 + L1ME4a LINE L1 5639 6074 -47 974 153 21 0 chr13 51230012 51230156 -68514742 - FAM SINE Alu -37 148 2 534 147 32 0 chr13 51230298 51230393 -68514505 - MER20 DNA MER1_type 0 219 122 2050 136 0 0 chr13 51230645 51230952 -68513946 + AluSx SINE Alu 3 309 0 1876 279 125 32 chr13 51232265 51233441 -68511457 - L2 LINE L2 0 3313 2029 234 313 12 0 chr13 51233493 51233576 -68511322 + L1ME2 LINE L1 6066 6149 -15 427 344 108 15 chr13 51233616 51233959 -68510939 - L2 LINE L2 -1344 1970 1596 342 240 60 73 chr13 51234221 51234371 -68510527 - MIR SINE MIR -23 239 92 257 290 16 0 chr13 51234533 51234595 -68510303 + MIR SINE MIR 200 262 0 * 281 338 56 56 chr13 51234592 51234752 -68510146 - L2 LINE L2 -1 3271 3112 348 313 81 51 chr13 51235882 51236435 -68508463 - L2 LINE L2 -151 3121 2565 388 336 83 22 chr13 51237753 51237982 -68506916 + MIR SINE MIR 2 244 -18 807 261 43 4 chr13 51238698 51238928 -68505970 + MIR SINE MIR 2 240 -22 27 0 0 0 chr13 51238944 51238971 -68505927 + AT_rich Low_complexity Low_complexity 1 27 0 1456 175 86 0 chr13 51241117 51241374 -68503524 + AluJo SINE Alu 1 279 -33 258 302 307 0 chr13 51243013 51243215 -68501683 + L2 LINE L2 2977 3240 -32 857 194 113 0 chr13 51243413 51243599 -68501299 - MER3 DNA MER1_type -2 207 1 271 362 34 0 chr13 51244088 51244237 -68500661 - MIR3 SINE MIR -30 178 25 2383 98 0 0 chr13 51244718 51245024 -68499874 + AluSq SINE Alu 1 306 -7 328 292 25 17 chr13 51245162 51245282 -68499616 + MIR SINE MIR 20 140 -122 1924 127 0 0 chr13 51245362 51245621 -68499277 + AluSq SINE Alu 1 259 -54 413 277 18 0 chr13 51247808 51247920 -68496978 - MIR SINE MIR -136 126 13 526 247 0 81 chr13 51250325 51250429 -68494469 + MER5B DNA MER1_type 18 104 -74 2120 99 4 0 chr13 51250429 51250702 -68494196 - AluSg SINE Alu 0 310 37 526 247 0 81 chr13 51250702 51250771 -68494127 + MER5B DNA MER1_type 104 177 -1 506 255 163 0 chr13 51250783 51250936 -68493962 - MER5A DNA MER1_type 0 189 12 542 216 142 17 chr13 51252422 51252598 -68492300 + LTR33A LTR ERVL 271 468 -55 875 162 27 22 chr13 51252788 51252973 -68491925 - MER53 DNA DNA -2 187 2 1737 164 3 30 chr13 51254297 51254601 -68490297 + AluJo SINE Alu 1 296 -16 23 0 0 0 chr13 51254601 51254624 -68490274 + AT_rich Low_complexity Low_complexity 1 23 0 1929 143 117 28 chr13 51254907 51255299 -68489599 + MSTC LTR MaLR 2 428 0 3268 108 13 4 chr13 51260776 51261246 -68483652 - Tigger3b DNA MER2_type -14 1217 744 832 137 16 16 chr13 51261266 51261390 -68483508 + FRAM SINE Alu 23 146 -30 4395 115 52 11 chr13 51261410 51262117 -68482781 - Tigger3b DNA MER2_type -478 753 18 404 312 104 35 chr13 51262221 51262596 -68482302 + L1MC4a LINE L1 4998 5398 -748 1182 231 104 22 chr13 51262622 51262986 -68481912 + L1MC4a LINE L1 5518 5911 -1897 859 227 152 45 chr13 51262991 51263321 -68481577 - MLT1G1 LTR MaLR -7 588 224 226 250 146 21 chr13 51263351 51263447 -68481451 - MLT1I LTR MaLR -234 175 68 26 0 0 0 chr13 51263701 51263727 -68481171 + AT_rich Low_complexity Low_complexity 1 26 0 232 195 184 35 chr13 51265292 51265379 -68479519 - MIR SINE MIR -111 151 52 1592 94 13 34 chr13 51266116 51266351 -68478547 - MER30 DNA MER1_type 0 230 1 245 94 0 0 chr13 51266744 51266776 -68478122 + L1P3 LINE L1 1046 1077 -5384 33080 102 11 55 chr13 51266857 51273294 -68471604 + L1PA7 LINE L1 12 6153 -1 192 217 11 98 chr13 51273334 51273426 -68471472 - MIR SINE MIR -59 203 120 189 75 125 25 chr13 51273550 51273590 -68471308 - L2 LINE L2 -3 3310 3267 22 0 0 0 chr13 51274104 51274126 -68470772 + AT_rich Low_complexity Low_complexity 1 22 0 49 52 0 0 chr13 51274301 51274378 -68470520 + AT_rich Low_complexity Low_complexity 1 77 0 495 265 141 17 chr13 51274479 51274770 -68470128 + L1MC4a LINE L1 5612 5938 -1870 2107 123 0 17 chr13 51275036 51275338 -68469560 + AluSc SINE Alu 3 299 -10 780 122 0 99 chr13 51275572 51275744 -68469154 + AluJb SINE Alu 150 304 -8 233 250 250 0 chr13 51276619 51276743 -68468155 + MIR SINE MIR 102 256 -6 2192 130 0 7 chr13 51276922 51277229 -68467669 + AluSx SINE Alu 1 305 -7 208 163 61 0 chr13 51277341 51277390 -68467508 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 1670 173 19 13 chr13 51277513 51277820 -68467078 + AluJb SINE Alu 2 310 -2 211 183 118 43 chr13 51277994 51278087 -68466811 - MIR SINE MIR -87 175 76 22 0 0 0 chr13 51278710 51278732 -68466166 + AT_rich Low_complexity Low_complexity 1 22 0 427 344 40 9 chr13 51283817 51284146 -68460752 + L2 LINE L2 1047 1385 -1929 1472 260 75 72 chr13 51284172 51284375 -68460523 + L2 LINE L2 2007 2208 -1105 2017 191 6 0 chr13 51284375 51284736 -68460162 - MLT1A1 LTR MaLR -2 363 1 1472 260 75 72 chr13 51284736 51284967 -68459931 + L2 LINE L2 2208 2437 -876 1852 166 3 0 chr13 51284967 51285251 -68459647 + AluJb SINE Alu 3 287 -25 1472 260 75 72 chr13 51285251 51286023 -68458875 + L2 LINE L2 2437 3214 -99 1749 156 0 27 chr13 51286023 51286324 -68458574 - AluJb SINE Alu -19 293 1 1472 260 75 72 chr13 51286324 51286423 -68458475 + L2 LINE L2 3214 3311 -2 1561 154 38 30 chr13 51286506 51286772 -68458126 + AluJb SINE Alu 1 268 -44 379 83 42 14 chr13 51286786 51286858 -68458040 + G-rich Low_complexity Low_complexity 4 77 0 358 298 80 35 chr13 51286963 51287270 -68457628 - L2 LINE L2 -230 3083 2768 1571 183 25 11 chr13 51287356 51287641 -68457257 - Tigger1 DNA MER2_type 0 2418 2130 * 4401 121 55 19 chr13 51287630 51288334 -68456564 - Tigger1 DNA MER2_type -1665 753 24 562 236 103 24 chr13 51288356 51288558 -68456340 - Charlie8 DNA MER1_type -1022 1395 81 244 333 11 86 chr13 51288563 51288640 -68456258 + MLT1J LTR MaLR 150 208 -303 2221 88 3 14 chr13 51288640 51288934 -68455964 + AluSx SINE Alu 1 291 -21 244 333 11 86 chr13 51288934 51289030 -68455868 + MLT1J LTR MaLR 208 310 -201 1084 150 19 184 chr13 51289060 51289434 -68455464 + MER93b LTR ERV1 1 312 -61 3164 199 24 53 chr13 51289439 51290460 -68454438 - MLT-int LTR MaLR -651 1084 1 3218 60 10 2 chr13 51290482 51290880 -68454018 + MER9 LTR ERVK 1 401 -110 255 299 209 35 chr13 51291343 51291711 -68453187 + L2 LINE L2 2841 3272 0 398 243 24 15 chr13 51291960 51292091 -68452807 + MIR SINE MIR 35 166 -42 244 224 26 13 chr13 51292081 51292157 -68452741 + L2 LINE L2 2830 2906 -366 * 2209 207 69 131 chr13 51292183 51292722 -68452176 - MER21B LTR ERV1 -48 815 349 2170 113 0 3 chr13 51292722 51293023 -68451875 + AluSc SINE Alu 1 300 -9 2209 207 69 131 chr13 51293023 51293352 -68451546 - MER21B LTR ERV1 -514 349 1 347 273 153 28 chr13 51293355 51293531 -68451367 + L2 LINE L2 2923 3120 -193 1342 167 5 9 chr13 51293533 51293777 -68451121 - AluJo SINE Alu 0 305 63 496 200 73 98 chr13 51293778 51293824 -68451074 + L2 LINE L2 3111 3157 -156 2767 149 126 22 chr13 51293824 51294362 -68450536 + LTR49 LTR ERV1 1 594 -1 496 200 73 98 chr13 51294362 51294520 -68450378 + L2 LINE L2 3157 3310 -3 385 208 23 100 chr13 51294515 51294645 -68450253 + MIR SINE MIR 138 257 -5 * 370 274 169 16 chr13 51295008 51295263 -68449635 + L1MC4a LINE L1 5607 5900 -1908 349 203 63 25 chr13 51295353 51295432 -68449466 + L2 LINE L2 3186 3267 -5 399 212 119 8 chr13 51297692 51297810 -68447088 - L1ME4a LINE L1 -28 6093 5963 573 236 115 0 chr13 51298449 51298597 -68446301 + Charlie1a DNA MER1_type 1 165 -1290 1958 149 41 80 chr13 51298604 51299120 -68445778 + Charlie1a DNA MER1_type 885 1380 -75 297 119 0 119 chr13 51299120 51299187 -68445711 + MER20 DNA MER1_type 1 59 -160 1125 143 0 28 chr13 51299190 51299372 -68445526 - FRAM SINE Alu -8 168 1 729 178 47 8 chr13 51299375 51299504 -68445394 + MER20 DNA MER1_type 86 219 0 277 132 0 38 chr13 51299507 51299560 -68445338 + Charlie1a DNA MER1_type 1376 1426 -29 1870 153 10 27 chr13 51299783 51300084 -68444814 + AluJo SINE Alu 1 296 -16 2658 83 6 3 chr13 51300135 51300483 -68444415 + THE1A LTR MaLR 1 349 -6 12589 89 2 1 chr13 51300491 51302068 -68442830 + THE1A-int LTR MaLR 2 1580 0 2855 96 0 3 chr13 51302068 51302424 -68442474 + THE1A LTR MaLR 1 355 0 351 318 56 0 chr13 51302787 51302894 -68442004 - L2 LINE L2 -7 3265 3153 2550 69 0 0 chr13 51303879 51304183 -68440715 - AluY SINE Alu -7 304 1 1581 180 58 10 chr13 51304323 51304617 -68440281 + AluJb SINE Alu 3 310 -2 645 239 130 29 chr13 51305595 51305833 -68439065 - L2 LINE L2 -5 3308 3047 579 250 23 10 chr13 51305874 51306040 -68438858 - MIR SINE MIR -12 250 2 454 323 45 14 chr13 51306067 51306290 -68438608 - L2 LINE L2 -337 2977 2748 1104 269 32 27 chr13 51306337 51306745 -68438153 - MLT1G LTR MaLR -132 435 21 2001 143 0 19 chr13 51306748 51307056 -68437842 + AluSx SINE Alu 3 304 -8 274 263 25 12 chr13 51307090 51307170 -68437728 - L2 LINE L2 -593 2721 2641 * 290 290 65 111 chr13 51307168 51307358 -68437540 + L2 LINE L2 3066 3246 -26 1967 90 135 0 chr13 51307358 51307625 -68437273 - AluSp SINE Alu 0 303 1 290 290 65 111 chr13 51307625 51307651 -68437247 + L2 LINE L2 3246 3272 0 1505 83 29 0 chr13 51308069 51308273 -68436625 + AluSp SINE Alu 91 300 -13 553 118 0 0 chr13 51308344 51308429 -68436469 - AluSp/q SINE Alu -2 311 227 1393 90 0 0 chr13 51308455 51308632 -68436266 - AluSg/x SINE Alu -10 302 126 850 237 37 47 chr13 51309765 51310012 -68434886 - MIR SINE MIR 0 262 19 412 300 21 50 chr13 51310031 51310171 -68434727 + MER5A DNA MER1_type 54 189 0 262 247 108 44 chr13 51310787 51310945 -68433953 - L2 LINE L2 -166 3106 2939 686 312 168 35 chr13 51311118 51312039 -68432859 - L2 LINE L2 -650 2664 1621 523 216 0 0 chr13 51312137 51312234 -68432664 + MER105 DNA DNA 65 161 -43 883 153 0 8 chr13 51312638 51312769 -68432129 + FLAM_C SINE Alu 1 130 -3 305 266 12 92 chr13 51316367 51316560 -68428338 + MIR3 SINE MIR 2 181 -69 2158 111 16 7 chr13 51316603 51316909 -68427989 + AluSq SINE Alu 1 309 -4 392 337 30 57 chr13 51317401 51317606 -68427292 - MIR3 SINE MIR -7 201 3 1707 129 3 111 chr13 51319167 51319508 -68425390 - AluJb SINE Alu -7 305 2 228 67 0 0 chr13 51319532 51319562 -68425336 + (T)n Simple_repeat Simple_repeat 1 30 0 203 223 181 64 chr13 51320292 51320386 -68424512 - L2 LINE L2 0 3272 3168 2122 183 62 56 chr13 51320607 51321109 -68423789 - MLT1D LTR MaLR 0 505 1 2060 102 11 4 chr13 51321125 51321400 -68423498 - AluSq SINE Alu -8 305 29 474 280 70 32 chr13 51322166 51322304 -68422594 - MIR SINE MIR -17 245 97 2706 14 0 0 chr13 51322304 51322597 -68422301 + AluY SINE Alu 1 293 -18 474 280 70 32 chr13 51322597 51322644 -68422254 - MIR SINE MIR -165 97 53 1700 102 17 4 chr13 51322770 51323006 -68421892 + AluSg/x SINE Alu 66 304 -8 291 299 32 32 chr13 51323079 51323233 -68421665 - L2 LINE L2 -1359 1955 1802 772 200 30 0 chr13 51323236 51323371 -68421527 - AluJo SINE Alu -145 167 29 897 140 0 7 chr13 51323372 51323508 -68421390 + AluJo/FRAM SINE Alu 168 302 -10 319 335 148 19 chr13 51323509 51324049 -68420849 - L2 LINE L2 -1504 1810 1201 1106 274 155 42 chr13 51324167 51324486 -68420412 - L1MEd LINE L1 -4866 1253 971 2025 184 11 43 chr13 51324486 51324744 -68420154 + MLT1A1 LTR MaLR 1 245 -120 2227 106 7 3 chr13 51324744 51325047 -68419851 - AluSq SINE Alu -9 304 1 2025 184 11 43 chr13 51325047 51325163 -68419735 + MLT1A1 LTR MaLR 245 363 -2 1106 274 155 42 chr13 51325163 51325671 -68419227 - L1MEd LINE L1 -5148 971 333 408 265 118 91 chr13 51325763 51326125 -68418773 + L1MEd LINE L1 671 1053 -5066 2443 69 0 0 chr13 51326125 51326416 -68418482 + AluSq SINE Alu 18 308 -5 408 265 118 91 chr13 51326416 51326578 -68418320 + L1MEd LINE L1 1053 1209 -4910 360 272 184 27 chr13 51326594 51326969 -68417929 + L1MEd LINE L1 1220 1653 -4476 31 26 0 0 chr13 51327029 51327067 -68417831 + AT_rich Low_complexity Low_complexity 1 38 0 416 237 70 59 chr13 51327086 51327272 -68417626 + L1MC5 LINE L1 7738 7925 -36 279 300 77 20 chr13 51327576 51327873 -68417025 + L1MEd LINE L1 2093 2406 -3723 2398 97 0 3 chr13 51327919 51328229 -68416669 + AluSg1 SINE Alu 1 309 0 767 213 97 11 chr13 51328287 51328555 -68416343 + L1ME1 LINE L1 5180 5613 -553 3272 71 28 0 chr13 51328557 51328979 -68415919 + MLT2A1 LTR ERVL 1 434 -10 1053 174 7 109 chr13 51328981 51329274 -68415624 + L1ME1 LINE L1 5603 5865 -301 2172 52 8 4 chr13 51329793 51330061 -68414837 - AluY SINE Alu -11 300 32 2596 50 0 0 chr13 51330337 51330640 -68414258 + AluY SINE Alu 1 303 -8 2392 86 0 0 chr13 51330650 51330942 -68413956 + AluSg SINE Alu 7 298 -12 31 58 0 0 chr13 51330987 51331039 -68413859 + AT_rich Low_complexity Low_complexity 1 52 0 1803 183 0 16 chr13 51331053 51331365 -68413533 + AluJo SINE Alu 6 312 0 1349 165 0 30 chr13 51331367 51331597 -68413301 + AluJb SINE Alu 73 295 -17 891 262 120 23 chr13 51331656 51332105 -68412793 + L1MC/D LINE L1 5174 5660 -754 1790 123 7 68 chr13 51332395 51332704 -68412194 + AluJo SINE Alu 1 290 -22 269 186 291 0 chr13 51332731 51332817 -68412081 + L1M4 LINE L1 4235 4345 -1801 1861 146 0 0 chr13 51332846 51333140 -68411758 + L1MA5A LINE L1 6004 6297 0 911 126 0 15 chr13 51333146 51333281 -68411617 + AluJb SINE Alu 4 136 -176 3486 110 9 38 chr13 51333432 51333985 -68410913 + L1MA8 LINE L1 5750 6286 -5 1855 162 0 3 chr13 51333994 51334302 -68410596 + AluJo SINE Alu 1 307 0 242 278 30 104 chr13 51334303 51334425 -68410473 + L1M4 LINE L1 4529 4658 -1488 1592 39 133 0 chr13 51334425 51334628 -68410270 + MER30 DNA MER1_type 1 230 0 242 278 30 104 chr13 51334628 51334843 -68410055 + L1M4 LINE L1 4658 4841 -1305 2482 94 0 0 chr13 51335562 51335871 -68409027 - AluSg SINE Alu -1 309 1 3788 179 87 58 chr13 51335923 51336511 -68408387 + MER31-int LTR ERV1 1601 2227 -4104 4982 73 24 37 chr13 51336511 51337184 -68407714 + MER4A LTR ERV1 1 664 0 3788 179 87 58 chr13 51337184 51337511 -68407387 + MER31-int LTR ERV1 2227 2543 -3788 552 281 138 35 chr13 51337523 51337754 -68407144 + MER34C LTR ERV1 160 414 -171 498 179 7 189 chr13 51337754 51337872 -68407026 + MER31-int LTR ERV1 1096 1234 -5963 1955 122 48 0 chr13 51337872 51338174 -68406724 + AluSx SINE Alu 1 315 0 498 179 7 189 chr13 51338174 51338279 -68406619 + MER31-int LTR ERV1 1234 3506 -3691 1017 254 61 85 chr13 51338299 51338794 -68406104 + LTR38 LTR ERV1 66 545 -11 1135 205 60 41 chr13 51338804 51339170 -68405728 + MER31-int LTR ERV1 1445 1817 -3306 817 211 0 0 chr13 51339174 51339326 -68405572 - FRAM SINE Alu -12 164 13 38832 29 23 2 chr13 51339362 51344848 -68400050 + L1PA3 LINE L1 576 6182 0 311 256 87 76 chr13 51344854 51345143 -68399755 + MER31-int LTR ERV1 1686 1977 -2959 2201 93 31 0 chr13 51345208 51345499 -68399399 - AluSq SINE Alu -13 300 1 823 166 45 13 chr13 51345719 51345876 -68399022 - FRAM SINE Alu -13 163 2 2156 144 37 3 chr13 51345918 51346244 -68398654 - MER1B DNA MER1_type 0 337 1 330 301 122 0 chr13 51346859 51346982 -68397916 - MIR3 SINE MIR -5 203 66 2338 105 13 0 chr13 51347268 51347572 -68397326 - AluSg SINE Alu -2 308 1 6092 78 21 23 chr13 51347882 51348750 -68396148 + SVA Other Other 1 866 -520 5689 63 4 18 chr13 51349186 51349905 -68394993 + SVA Other Other 678 1386 0 543 253 151 42 chr13 51350741 51351192 -68393706 - L1ME4a LINE L1 -30 6091 5592 2431 75 0 3 chr13 51351288 51351583 -68393315 + AluSc SINE Alu 1 294 -15 253 278 87 51 chr13 51351622 51351956 -68392942 - L1ME4a LINE L1 -1127 5019 4674 1544 185 51 67 chr13 51352056 51352441 -68392457 + MER61E LTR ERV1 1 391 -403 1973 146 0 44 chr13 51352441 51352756 -68392142 - AluSx SINE Alu -11 301 1 1544 185 51 67 chr13 51352756 51353080 -68391818 + MER61E LTR ERV1 391 787 -7 288 53 0 0 chr13 51353223 51353261 -68391637 + (CA)n Simple_repeat Simple_repeat 2 39 0 267 182 9 181 chr13 51353353 51353451 -68391447 + L1P5 LINE L1 5285 5340 -826 2300 89 10 16 chr13 51353451 51353765 -68391133 + AluSx SINE Alu 1 312 0 267 182 9 181 chr13 51353765 51353860 -68391038 + L1P5 LINE L1 5340 5450 -716 211 325 126 26 chr13 51354219 51354490 -68390408 + L2 LINE L2 2206 2503 -811 2173 118 53 28 chr13 51355142 51355497 -68389401 + THE1B LTR MaLR 1 364 0 401 233 101 73 chr13 51355596 51355815 -68389083 - MIR SINE MIR -9 253 29 2189 128 20 69 chr13 51355942 51356334 -68388564 + MER83C LTR ERV1 1 373 0 2105 127 0 10 chr13 51358073 51358380 -68386518 - AluSc SINE Alu -5 304 1 5838 99 24 33 chr13 51358423 51360424 -68384474 + L1PA16 LINE L1 4168 6161 -5 446 241 56 43 chr13 51361392 51361554 -68383344 + L2 LINE L2 2142 2305 -1009 451 332 104 11 chr13 51361569 51361924 -68382974 - L2 LINE L2 -4 3309 2922 1053 261 21 73 chr13 51362008 51362380 -68382518 + L1MEc LINE L1 34 386 -6010 * 2284 204 26 76 chr13 51362376 51362557 -68382341 + L1ME1 LINE L1 5514 5702 -464 2324 98 7 0 chr13 51362557 51362853 -68382045 + AluSp SINE Alu 1 298 -15 2284 204 26 76 chr13 51362853 51363354 -68381544 + L1ME1 LINE L1 5702 6162 -4 306 0 0 0 chr13 51364051 51364085 -68380813 + (TCTCCC)n Simple_repeat Simple_repeat 1 34 0 6117 67 22 5 chr13 51364085 51364890 -68380008 + SVA Other Other 50 868 -518 6036 64 7 141 chr13 51364939 51366042 -68378856 + SVA Other Other 430 1384 -2 258 192 0 0 chr13 51366042 51366094 -68378804 + L1MB2 LINE L1 6120 6171 0 700 158 61 0 chr13 51366498 51366612 -68378286 - FLAM_A SINE Alu -12 130 10 249 274 7 89 chr13 51366691 51366826 -68378072 - L1ME4a LINE L1 -23 6098 5975 22 0 0 0 chr13 51367108 51367130 -68377768 + AT_rich Low_complexity Low_complexity 1 22 0 2334 87 3 0 chr13 51367172 51367460 -68377438 + AluSq SINE Alu 4 292 -21 355 241 103 86 chr13 51367881 51368010 -68376888 + MER5B DNA MER1_type 1 135 -43 2221 101 3 0 chr13 51368010 51368297 -68376601 + AluSc SINE Alu 9 296 -13 355 241 103 86 chr13 51368297 51368341 -68376557 + MER5B DNA MER1_type 135 177 -1 2422 88 0 0 chr13 51368677 51368971 -68375927 - AluY SINE Alu -17 294 1 1582 170 48 4 chr13 51369370 51369640 -68375258 - AluJo SINE Alu -16 296 15 255 287 20 59 chr13 51369642 51369664 -68375234 + MIR SINE MIR 22 43 -219 1793 163 40 10 chr13 51369664 51369845 -68375053 - AluJo SINE Alu -2 310 136 453 19 0 0 chr13 51369845 51369899 -68374999 + (GA)n Simple_repeat Simple_repeat 2 55 0 * 486 0 0 0 chr13 51369898 51369952 -68374946 + (TG)n Simple_repeat Simple_repeat 2 55 0 1793 163 40 10 chr13 51369899 51370071 -68374827 - AluJo SINE Alu -176 136 1 255 287 20 59 chr13 51370071 51370149 -68374749 + MIR SINE MIR 43 118 -144 2343 131 22 8 chr13 51370176 51370535 -68374363 + THE1B LTR MaLR 1 364 0 2163 187 37 15 chr13 51371774 51372229 -68372669 + MLT1C LTR MaLR 3 467 0 2139 120 7 0 chr13 51372768 51373060 -68371838 - AluY SINE Alu -17 294 1 1994 147 0 3 chr13 51373060 51373352 -68371546 - AluJo SINE Alu -9 303 13 2382 102 0 0 chr13 51373385 51373688 -68371210 - AluSg SINE Alu -7 303 1 337 283 40 4 chr13 51373729 51373867 -68371031 - MIR3 SINE MIR -5 203 60 2284 105 3 13 chr13 51374101 51374416 -68370482 + AluSx SINE Alu 1 312 0 2015 106 84 0 chr13 51374998 51375282 -68369616 + AluSg SINE Alu 1 308 -2 250 255 88 20 chr13 51375742 51375844 -68369054 + MIR SINE MIR 110 218 -44 2356 88 0 3 chr13 51376036 51376332 -68368566 + AluY SINE Alu 1 295 -16 449 178 0 0 chr13 51377736 51377809 -68367089 + AluS SINE Alu 2 74 -238 2114 133 7 3 chr13 51377896 51378197 -68366701 + AluSx SINE Alu 1 302 -10 2261 109 0 3 chr13 51378570 51378864 -68366034 + AluSx SINE Alu 1 293 -19 305 151 0 140 chr13 51379762 51379794 -68365104 + MER116 DNA Mariner 1 36 -44 2143 81 46 14 chr13 51379794 51380077 -68364821 + AluY SINE Alu 1 292 -19 305 151 0 140 chr13 51380077 51380137 -68364761 + MER116 DNA Mariner 36 80 0 1592 164 6 69 chr13 51380206 51380524 -68364374 - AluJo SINE Alu -11 301 4 365 145 11 121 chr13 51380898 51381153 -68363745 + AluJb SINE Alu 1 282 -43 1838 141 187 8 chr13 51381153 51381516 -68363382 + MSTA LTR MaLR 1 428 0 9290 166 37 2 chr13 51381520 51383112 -68361786 + MSTA-int LTR MaLR 5 1651 0 2172 128 150 5 chr13 51383112 51383486 -68361412 + MSTA LTR MaLR 1 428 0 365 145 11 121 chr13 51383486 51383597 -68361301 + AluJb SINE Alu 283 325 0 1870 88 15 0 chr13 51384244 51384505 -68360393 + L1MA1 LINE L1 6034 6298 -4 23 0 0 0 chr13 51384505 51384528 -68360370 + AT_rich Low_complexity Low_complexity 1 23 0 1075 115 0 0 chr13 51384543 51384682 -68360216 + AluSg SINE Alu 1 139 -171 2286 86 0 0 chr13 51384682 51384985 -68359913 + AluSc SINE Alu 1 303 0 1633 180 11 0 chr13 51385554 51385838 -68359060 - AluSx SINE Alu -10 302 16 896 132 0 16 chr13 51385884 51386013 -68358885 + FLAM_C SINE Alu 1 127 -16 2460 57 0 7 chr13 51386409 51386706 -68358192 + AluY SINE Alu 1 295 -16 1838 149 0 17 chr13 51387717 51388005 -68356893 + AluJb SINE Alu 20 302 -10 2181 110 0 7 chr13 51388439 51388730 -68356168 + AluSx SINE Alu 1 289 -23 2198 190 47 14 chr13 51388802 51389229 -68355669 + MER68 LTR ERV1 1 441 -121 2113 107 7 10 chr13 51389265 51389555 -68355343 - AluSx SINE Alu -23 289 1 330 67 0 0 chr13 51390522 51390567 -68354331 + (TG)n Simple_repeat Simple_repeat 2 46 0 782 178 0 8 chr13 51390683 51390812 -68354086 - FLAM_C SINE Alu -5 128 1 806 143 38 23 chr13 51391158 51391291 -68353607 - AluJo SINE Alu -176 136 2 2216 114 0 3 chr13 51391776 51392073 -68352825 + AluSx SINE Alu 1 296 -16 513 239 148 14 chr13 51392125 51392267 -68352631 - MIR3 SINE MIR -21 187 27 4929 68 12 18 chr13 51392506 51392603 -68352295 + PABL_A LTR ERV1 1 97 -563 2201 116 7 3 chr13 51392603 51392904 -68351994 + AluSq SINE Alu 1 302 -11 4929 68 12 18 chr13 51392904 51393470 -68351428 + PABL_A LTR ERV1 97 660 0 22 0 0 0 chr13 51393701 51393723 -68351175 + AT_rich Low_complexity Low_complexity 1 22 0 404 235 59 0 chr13 51394013 51394132 -68350766 - L1ME4a LINE L1 -40 6081 5956 5004 138 39 32 chr13 51394441 51395336 -68349562 + MER4D LTR ERV1 1 901 -2 222 37 0 0 chr13 51395958 51395985 -68348913 + (CA)n Simple_repeat Simple_repeat 2 28 0 225 271 0 0 chr13 51396035 51396083 -68348815 - MIR SINE MIR -108 154 107 21 0 0 0 chr13 51396711 51396732 -68348166 + AT_rich Low_complexity Low_complexity 1 21 0 989 214 17 34 chr13 51397718 51397956 -68346942 + MIR SINE MIR 29 262 0 23 0 0 0 chr13 51398752 51398775 -68346123 + AT_rich Low_complexity Low_complexity 1 23 0 1960 157 48 8 chr13 51398998 51399349 -68345549 + MLT1A1 LTR MaLR 1 365 0 218 280 67 13 chr13 51399439 51399514 -68345384 + L2 LINE L2 3190 3268 -4 2342 46 42 3 chr13 51400308 51400593 -68344305 - AluY SINE Alu -15 296 1 3189 138 41 18 chr13 51400792 51401406 -68343492 + MER11A LTR ERVK 638 1265 -1 210 241 35 0 chr13 51404178 51404236 -68340662 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 213 39 0 0 chr13 51405576 51405602 -68339296 + (CA)n Simple_repeat Simple_repeat 2 27 0 253 183 0 24 chr13 51405606 51405688 -68339210 + (TA)n Simple_repeat Simple_repeat 2 81 0 301 302 0 38 chr13 51405694 51405800 -68339098 + L1MC4 LINE L1 6614 6715 -1327 213 202 12 24 chr13 51405846 51405930 -68338968 + (TA)n Simple_repeat Simple_repeat 1 83 0 5857 140 48 56 chr13 51405946 51406126 -68338772 + Tigger1 DNA MER2_type 1 181 -2237 2176 91 3 0 chr13 51406126 51406412 -68338486 - AluSg SINE Alu -23 287 1 5857 140 48 56 chr13 51406412 51407423 -68337475 + Tigger1 DNA MER2_type 181 1182 -1236 7386 178 38 122 chr13 51407424 51410684 -68334214 + L1M2c LINE L1 14 2745 -4043 2215 113 0 0 chr13 51410684 51410984 -68333914 + AluY SINE Alu 3 302 -9 7386 178 38 122 chr13 51410984 51412402 -68332496 + L1M2c LINE L1 2745 4281 -2507 2968 151 2 8 chr13 51412407 51412917 -68331981 + Tigger1 DNA MER2_type 1911 2417 -1 368 252 115 3 chr13 51414841 51415040 -68329858 - L1MC/D LINE L1 -364 5757 5609 2103 114 27 3 chr13 51415940 51416239 -68328659 - AluSc SINE Alu -3 306 1 355 295 74 19 chr13 51416782 51417040 -68327858 - HAL1b LINE L1 -609 739 468 5234 105 8 21 chr13 51417487 51417824 -68327074 - L1PA14 LINE L1 -2 6159 5819 2268 89 0 10 chr13 51417824 51418126 -68326772 - AluY SINE Alu -12 299 1 5234 105 8 21 chr13 51418126 51418627 -68326271 - L1PA14 LINE L1 -342 5819 5332 200 246 18 35 chr13 51419081 51419138 -68325760 - MIR SINE MIR -62 146 91 1881 143 0 0 chr13 51419637 51419910 -68324988 + AluSx SINE Alu 1 273 -39 213 121 0 0 chr13 51421035 51421068 -68323830 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2039 93 0 0 chr13 51421286 51421543 -68323355 + AluSg SINE Alu 33 289 -21 13289 136 36 18 chr13 51421568 51423883 -68321015 + L1MA2 LINE L1 1252 3635 -3930 2240 117 0 0 chr13 51423883 51424191 -68320707 + AluSc SINE Alu 1 308 -1 13289 136 36 18 chr13 51424191 51424445 -68320453 + L1MA2 LINE L1 3635 3883 -3682 8704 155 25 10 chr13 51424468 51424641 -68320257 + L1MA2 LINE L1 4943 5112 -2611 2153 132 3 0 chr13 51424641 51424945 -68319953 + AluSx SINE Alu 1 305 -7 8704 155 25 10 chr13 51424945 51427436 -68317462 + L1MA2 LINE L1 5112 7651 -72 306 150 67 0 chr13 51428137 51428197 -68316701 + U2 snRNA snRNA 6 69 -119 1791 15 0 0 chr13 51428387 51428591 -68316307 - L1PA2 LINE L1 -2 6153 5950 2179 128 3 3 chr13 51428599 51428911 -68315987 - AluSx SINE Alu 0 312 1 666 233 33 61 chr13 51429295 51429475 -68315423 + MER5A DNA MER1_type 14 188 -1 302 238 12 48 chr13 51430066 51430150 -68314748 + MER21B LTR ERV1 3 83 -780 2125 100 0 0 chr13 51431105 51431386 -68313512 - AluSx SINE Alu -26 286 6 1098 142 39 34 chr13 51431730 51431935 -68312963 - AluJo SINE Alu -106 206 1 303 173 254 9 chr13 51431935 51432045 -68312853 - L1MB8 LINE L1 -269 5909 5773 5259 102 66 19 chr13 51432055 51432992 -68311906 - L1MA4A LINE L1 -1 7004 6024 937 195 0 0 chr13 51433005 51433164 -68311734 - AluJb SINE Alu -23 289 131 242 29 29 0 chr13 51433180 51433215 -68311683 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 437 171 0 13 chr13 51433219 51433295 -68311603 - AluJb SINE Alu -54 258 184 1402 182 115 7 chr13 51433296 51433565 -68311333 - AluJo SINE Alu -14 298 1 3012 190 28 9 chr13 51433565 51434240 -68310658 - L1MA4A LINE L1 -815 6033 5346 1961 137 7 0 chr13 51434353 51434646 -68310252 - AluSx SINE Alu -17 295 1 9364 178 13 30 chr13 51434646 51435667 -68309231 - L1MA4A LINE L1 -1844 5004 3967 1810 180 0 10 chr13 51435667 51435972 -68308926 - AluJo SINE Alu -8 304 3 9364 178 13 30 chr13 51435972 51436358 -68308540 - L1MA4A LINE L1 -2881 3967 3576 1895 161 0 10 chr13 51436358 51436649 -68308249 - AluJo SINE Alu -24 288 1 9364 178 13 30 chr13 51436649 51437206 -68307692 - L1MA4A LINE L1 -3272 3576 3090 2226 106 0 3 chr13 51437206 51437509 -68307389 - AluSg SINE Alu -8 302 1 9364 178 13 30 chr13 51437509 51438028 -68306870 - L1MA4A LINE L1 -3758 3090 2564 3161 216 90 35 chr13 51438030 51439053 -68305845 + L1M4 LINE L1 4015 5093 -1053 1455 230 84 94 chr13 51439053 51439680 -68305218 - L1MCa LINE L1 -5784 642 22 1204 196 56 11 chr13 51439686 51439972 -68304926 - L1MB8 LINE L1 -567 5599 5301 928 123 31 6 chr13 51440009 51440171 -68304727 - L1MA6 LINE L1 -6 6294 6129 201 149 15 90 chr13 51441437 51441504 -68303394 + A-rich Low_complexity Low_complexity 4 65 0 463 117 25 75 chr13 51443394 51443489 -68301409 + L1M2c LINE L1 1825 1923 -4866 1796 179 3 0 chr13 51443489 51443779 -68301119 + AluSx SINE Alu 1 291 -21 285 29 0 0 chr13 51443780 51443814 -68301084 + (TA)n Simple_repeat Simple_repeat 1 34 0 463 117 25 75 chr13 51443814 51443836 -68301062 + L1M2c LINE L1 1922 1938 -4851 2813 191 18 40 chr13 51443837 51443956 -68300942 + L1M2c LINE L1 2153 2273 -4515 1856 163 7 13 chr13 51443956 51444256 -68300642 + AluSg SINE Alu 1 298 -12 2813 191 18 40 chr13 51444256 51445269 -68299629 + L1M2c LINE L1 2273 3259 -3529 1383 118 48 0 chr13 51445275 51445504 -68299394 + L1MA5 LINE L1 6055 6294 -6 779 254 11 77 chr13 51445559 51445819 -68299079 - MLT1H LTR MaLR -235 314 72 2404 80 7 0 chr13 51445833 51446134 -68298764 - AluY SINE Alu -8 303 1 3070 259 37 33 chr13 51446538 51447560 -68297338 + L1PA12 LINE L1 10 1035 -6546 2390 65 3 37 chr13 51448090 51448412 -68296486 + AluY SINE Alu 1 311 0 432 0 0 0 chr13 51448412 51448460 -68296438 + (TA)n Simple_repeat Simple_repeat 2 49 0 2208 126 0 0 chr13 51449098 51449407 -68295491 - AluSg SINE Alu -1 309 1 6376 95 8 8 chr13 51449417 51450543 -68294355 - L1PA11 LINE L1 0 6174 5052 359 195 39 0 chr13 51450552 51450629 -68294269 - L1PA13 LINE L1 -5005 1782 1703 888 225 112 78 chr13 51451290 51451664 -68293234 + L1ME3A LINE L1 5779 6165 -5 2380 101 0 0 chr13 51451731 51452029 -68292869 + AluSg SINE Alu 1 298 -12 634 278 78 72 chr13 51452046 51452253 -68292645 + L1MC/D LINE L1 4798 5002 -1359 1429 175 36 68 chr13 51452253 51452561 -68292337 - AluJo SINE Alu -14 298 1 634 278 78 72 chr13 51452561 51452912 -68291986 + L1MC/D LINE L1 5002 5363 -998 1890 118 79 0 chr13 51452912 51453191 -68291707 + AluSg SINE Alu 1 301 -9 634 278 78 72 chr13 51453191 51453449 -68291449 + L1MC/D LINE L1 5363 5618 -743 414 0 0 0 chr13 51453556 51453608 -68291290 - L1PA2 LINE L1 -154 6001 5950 2195 125 3 3 chr13 51453616 51453928 -68290970 - AluSx SINE Alu 0 312 1 622 221 40 47 chr13 51454312 51454461 -68290437 + MER5A DNA MER1_type 14 161 -28 788 169 4 161 chr13 51454726 51454986 -68289912 - MER20 DNA MER1_type 0 219 1 516 181 24 127 chr13 51456339 51456505 -68288393 - MLT1H LTR MaLR -22 527 379 2267 235 20 46 chr13 51456609 51457350 -68287548 + L1M2c LINE L1 1193 1952 -4837 1796 179 3 0 chr13 51457350 51457640 -68287258 + AluSx SINE Alu 1 291 -21 432 0 0 0 chr13 51457641 51457689 -68287209 + (TA)n Simple_repeat Simple_repeat 1 48 0 2267 235 20 46 chr13 51457689 51457711 -68287187 + L1M2c LINE L1 1917 1938 -4851 2866 185 18 44 chr13 51457712 51457831 -68287067 + L1M2c LINE L1 2153 2274 -4514 1933 156 7 13 chr13 51457831 51458132 -68286766 + AluSg SINE Alu 1 299 -11 2866 185 18 44 chr13 51458132 51459149 -68285749 + L1M2c LINE L1 2274 3259 -3529 1166 109 57 0 chr13 51459155 51459348 -68285550 + L1MA5 LINE L1 6055 6258 -42 774 256 11 75 chr13 51459426 51459692 -68285206 - MLT1H LTR MaLR -228 321 73 2419 79 0 7 chr13 51459707 51460011 -68284887 - AluY SINE Alu -9 302 1 40975 32 22 0 chr13 51460357 51466374 -68278524 + L1PA2 LINE L1 2 6155 0 3094 259 37 33 chr13 51466445 51467467 -68277431 + L1PA12 LINE L1 10 1035 -6546 6118 95 9 6 chr13 51467487 51469150 -68275748 + L1PA11 LINE L1 4452 6157 -17 304 232 42 0 chr13 51469158 51469265 -68275633 - L1ME3 LINE L1 -3 6159 6049 2474 261 80 36 chr13 51469266 51469646 -68275252 - L1M4 LINE L1 -1138 5008 4646 351 0 0 0 chr13 51469646 51469685 -68275213 + (CA)n Simple_repeat Simple_repeat 2 40 0 2474 261 80 36 chr13 51469685 51469849 -68275049 - L1M4 LINE L1 -1500 4646 4491 2308 82 3 3 chr13 51469849 51470141 -68274757 - AluY SINE Alu -15 296 5 2474 261 80 36 chr13 51470141 51470284 -68274614 - L1M4 LINE L1 -1655 4491 4356 6609 63 7 0 chr13 51470284 51471922 -68272976 - L1PA8 LINE L1 -9 6163 4508 1295 164 103 46 chr13 51471926 51472207 -68272691 - AluJo SINE Alu -15 297 1 2474 261 80 36 chr13 51472207 51472805 -68272093 - L1M4 LINE L1 -1792 4354 3660 1768 5 0 0 chr13 51474474 51474674 -68270224 + L1PA2 LINE L1 5956 6155 0 573 152 0 20 chr13 51475084 51475235 -68269663 + (TA)n Simple_repeat Simple_repeat 1 148 0 2333 95 3 0 chr13 51475336 51475642 -68269256 - AluSg SINE Alu -3 307 1 310 247 0 0 chr13 51475857 51475930 -68268968 - L1ME LINE L1 -474 5647 5575 28695 41 4 2 chr13 51477979 51481691 -68263207 - L1P LINE L1 -2423 3723 7 290 333 20 0 chr13 51482399 51482498 -68262400 + GA-rich Low_complexity Low_complexity 2 102 0 4982 155 45 13 chr13 51482624 51484092 -68260806 - L1MA8 LINE L1 0 6291 4774 293 242 127 72 chr13 51484932 51485071 -68259827 - L1ME LINE L1 -847 5299 5169 1864 153 0 7 chr13 51485071 51485359 -68259539 - AluJb SINE Alu -21 291 6 293 242 127 72 chr13 51485359 51485620 -68259278 - L1ME LINE L1 -977 5169 4877 355 268 21 7 chr13 51485731 51485873 -68259025 - L1ME LINE L1 -1454 4692 4549 23 0 0 0 chr13 51485913 51485936 -68258962 + AT_rich Low_complexity Low_complexity 1 23 0 911 281 105 20 chr13 51486013 51486067 -68258831 - L1ME LINE L1 -399 5763 5715 2125 105 14 0 chr13 51486067 51486361 -68258537 - AluSx SINE Alu -14 298 1 911 281 105 20 chr13 51486361 51487345 -68257553 - L1ME LINE L1 -447 5715 4637 * 4895 97 4 0 chr13 51487343 51488056 -68256842 + L1P LINE L1 572 1287 -4859 10980 37 0 0 chr13 51488060 51490202 -68254696 + L1PA5 LINE L1 4030 6150 -4 1853 246 100 59 chr13 51490236 51490549 -68254349 - L1ME LINE L1 -1538 4608 4309 1795 155 6 32 chr13 51490549 51490865 -68254033 - AluJb SINE Alu -4 308 1 1853 246 100 59 chr13 51490865 51491101 -68253797 - L1ME LINE L1 -1837 4309 4084 261 0 0 0 chr13 51491101 51491130 -68253768 + (TG)n Simple_repeat Simple_repeat 1 29 0 1853 246 100 59 chr13 51491130 51491161 -68253737 - L1ME LINE L1 -2062 4084 4056 1711 162 44 3 chr13 51491161 51491458 -68253440 + AluSg SINE Alu 1 309 -1 1853 246 100 59 chr13 51491458 51492222 -68252676 - L1ME LINE L1 -2090 4056 3325 2358 71 0 0 chr13 51492222 51492505 -68252393 + AluY SINE Alu 1 314 0 280 0 0 0 chr13 51492505 51492536 -68252362 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1853 246 100 59 chr13 51492536 51492921 -68251977 - L1ME LINE L1 -2821 3325 2797 2406 81 3 0 chr13 51492921 51493219 -68251679 + AluSp SINE Alu 1 299 -14 1853 246 100 59 chr13 51493219 51493435 -68251463 - L1ME LINE L1 -3349 2797 2591 806 276 36 23 chr13 51493675 51493983 -68250915 - L1ME LINE L1 -1998 4148 3837 2550 43 0 3 chr13 51493993 51494292 -68250606 - AluY SINE Alu -13 298 1 13054 194 36 13 chr13 51494373 51499808 -68245090 - L1PA16 LINE L1 -9 6860 1307 2742 148 12 0 chr13 51499815 51500220 -68244678 - L1PA16 LINE L1 -6437 412 3 230 344 72 11 chr13 51500221 51500483 -68244415 - L1ME LINE L1 -2322 3824 3547 577 137 21 0 chr13 51500550 51500645 -68244253 + AluSg/x SINE Alu 204 300 -12 636 183 92 12 chr13 51500991 51501155 -68243743 + MER96B DNA MER1_type? 3 179 -238 322 219 169 97 chr13 51501664 51501757 -68243141 - MER112 DNA MER1_type -2 254 169 2351 102 3 0 chr13 51501757 51502061 -68242837 + AluSp SINE Alu 1 305 -8 322 219 169 97 chr13 51502061 51502204 -68242694 - MER112 DNA MER1_type -87 169 1 505 282 16 43 chr13 51502208 51502396 -68242502 + MIR3 SINE MIR 23 205 -3 1999 129 14 7 chr13 51502474 51502768 -68242130 + AluSx SINE Alu 1 296 -16 405 0 0 0 chr13 51503376 51503421 -68241477 + (TG)n Simple_repeat Simple_repeat 1 45 0 1037 203 53 123 chr13 51503590 51504137 -68240761 - L1MC5 LINE L1 -48 7913 7405 454 259 9 0 chr13 51504137 51504253 -68240645 - MIR SINE MIR -42 220 104 2239 109 10 0 chr13 51505609 51505912 -68238986 - AluSx SINE Alu -6 306 1 182 351 69 15 chr13 51508072 51508203 -68236695 + L3b LINE CR1 1125 1262 -321 182 189 38 0 chr13 51508412 51508518 -68236380 + (TA)n Simple_repeat Simple_repeat 2 111 0 2023 120 4 7 chr13 51508541 51508817 -68236081 - AluSx SINE Alu -37 275 1 351 338 35 0 chr13 51509356 51509501 -68235397 - MER5A DNA MER1_type 0 189 40 207 235 195 40 chr13 51510328 51510477 -68234421 + MIR SINE MIR 81 252 -10 557 231 16 0 chr13 51510721 51510842 -68234056 - AluJ SINE Alu 0 312 190 893 158 0 0 chr13 51510848 51510981 -68233917 - AluJ SINE Alu -179 133 1 2481 70 0 6 chr13 51511208 51511520 -68233378 - AluY SINE Alu -1 310 1 2086 127 14 0 chr13 51512124 51512415 -68232483 + AluSx SINE Alu 5 299 -13 396 59 0 0 chr13 51512415 51512466 -68232432 + (TA)n Simple_repeat Simple_repeat 1 51 0 829 125 8 0 chr13 51513139 51513259 -68231639 - FRAM SINE Alu -28 148 28 3341 184 37 3 chr13 51513259 51513857 -68231041 + MER54A LTR ERVL 284 901 0 2337 101 7 0 chr13 51514843 51515141 -68229757 + AluSx SINE Alu 1 300 -12 1016 24 81 0 chr13 51515892 51516016 -68228882 - MER85 DNA T2_type -2 137 4 1302 98 12 0 chr13 51517390 51517554 -68227344 - AluSg/x SINE Alu -15 295 130 1978 162 0 3 chr13 51517562 51517871 -68227027 - AluSx SINE Alu -4 308 1 2084 143 13 0 chr13 51517977 51518277 -68226621 - AluSx SINE Alu -8 304 1 18511 89 1 0 chr13 51518483 51521013 -68223885 - L1PA7 LINE L1 -1207 4939 2409 6680 78 7 16 chr13 51521013 51522204 -68222694 + L1PA7 LINE L1 4958 6150 -4 224 247 54 21 chr13 51524101 51524194 -68220704 + MIR SINE MIR 35 130 -78 2265 106 0 7 chr13 51525994 51526297 -68218601 - AluSx SINE Alu -11 301 1 1124 96 0 7 chr13 51526297 51526443 -68218455 - AluSq/x SINE Alu -168 145 1 771 224 0 0 chr13 51526607 51526750 -68218148 + FRAM SINE Alu 4 146 -30 351 0 0 0 chr13 51526754 51526793 -68218105 + (CA)n Simple_repeat Simple_repeat 2 40 0 940 178 12 0 chr13 51527201 51527364 -68217534 + AluJb SINE Alu 134 298 -14 186 250 0 23 chr13 51527426 51527470 -68217428 + MIR SINE MIR 82 124 -84 228 326 31 39 chr13 51527865 51527994 -68216904 - MIR SINE MIR -129 133 6 2067 124 0 22 chr13 51528750 51529064 -68215834 + AluSq SINE Alu 1 307 -6 876 235 68 56 chr13 51529219 51529466 -68215432 - MLT1L LTR MaLR -210 405 151 1345 230 46 9 chr13 51529466 51529792 -68215106 - MER58B DNA MER1_type -3 338 1 876 235 68 56 chr13 51529792 51529884 -68215014 - MLT1L LTR MaLR -464 151 62 2441 87 0 6 chr13 51530242 51530554 -68214344 + AluY SINE Alu 2 311 0 714 314 10 34 chr13 51531048 51531341 -68213557 - LTR67 LTR ERVL -270 287 2 199 237 140 18 chr13 51531353 51531467 -68213431 - L2 LINE L2 -304 2968 2841 1722 163 25 3 chr13 51531540 51531823 -68213075 - AluJo SINE Alu -21 291 3 203 88 29 0 chr13 51532003 51532037 -68212861 + (TC)n Simple_repeat Simple_repeat 2 36 0 1749 146 0 67 chr13 51532501 51532816 -68212082 - AluJo SINE Alu -17 295 2 180 269 76 42 chr13 51533010 51533129 -68211769 - L2 LINE L2 -181 3091 2969 490 272 116 13 chr13 51533362 51533586 -68211312 + MIR SINE MIR 16 262 0 504 122 0 12 chr13 51533731 51533813 -68211085 - FLAM_A SINE Alu -18 124 44 427 250 7 64 chr13 51533840 51533980 -68210918 - L2 LINE L2 -1 3312 3181 218 364 64 0 chr13 51534016 51534126 -68210772 + L2 LINE L2 3155 3271 -1 1381 159 58 39 chr13 51535558 51535815 -68209083 - AluJb SINE Alu -19 293 32 225 94 0 0 chr13 51535885 51535917 -68208981 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 2401 69 0 23 chr13 51535972 51536276 -68208622 - AluY SINE Alu -14 297 1 2319 96 3 0 chr13 51538088 51538389 -68206509 - AluSp SINE Alu -11 302 1 1446 91 11 0 chr13 51538625 51538812 -68206086 + AluSg1 SINE Alu 2 190 -119 378 0 0 0 chr13 51538826 51538868 -68206030 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 550 278 26 16 chr13 51539000 51539194 -68205704 - MIR SINE MIR -7 255 60 2677 48 0 3 chr13 51539302 51539613 -68205285 - AluY SINE Alu -1 310 1 2579 47 0 0 chr13 51539818 51540117 -68204781 - AluY SINE Alu -12 299 1 1459 85 0 0 chr13 51540587 51540764 -68204134 - AluSx SINE Alu -135 177 1 2272 69 0 52 chr13 51540967 51541272 -68203626 + AluSg SINE Alu 1 289 -21 206 263 0 18 chr13 51541876 51541933 -68202965 - MIR SINE MIR -68 140 85 1930 113 58 0 chr13 51543081 51543356 -68201542 - AluSp SINE Alu -22 291 1 1540 124 3 118 chr13 51543364 51543722 -68201176 - AluSx SINE Alu 0 321 1 294 307 107 7 chr13 51544031 51544171 -68200727 + MER5A DNA MER1_type 35 188 -1 199 259 111 0 chr13 51544172 51544253 -68200645 + MIR SINE MIR 102 191 -71 630 210 16 86 chr13 51544277 51544427 -68200471 + MER5A DNA MER1_type 17 153 -36 1091 146 169 50 chr13 51544427 51544688 -68200210 + AluJb SINE Alu 1 292 -10 630 210 16 86 chr13 51544688 51544723 -68200175 + MER5A DNA MER1_type 153 189 0 355 325 18 0 chr13 51544726 51544840 -68200058 + L2 LINE L2 3192 3307 -6 2068 108 3 17 chr13 51545234 51545529 -68199369 - AluSg SINE Alu -19 291 1 319 297 186 0 chr13 51545801 51545946 -68198952 + MIR SINE MIR 79 250 -12 2338 109 0 0 chr13 51546403 51546714 -68198184 - AluY SINE Alu 0 311 1 241 141 169 0 chr13 51547269 51547340 -68197558 + HsTC2 DNA Tc2 1795 1877 -21 1157 207 183 7 chr13 51548205 51548495 -68196403 - MLT1G3 LTR MaLR -10 520 180 1053 235 158 9 chr13 51548499 51548848 -68196050 - L1ME2 LINE L1 -68 6096 5696 1588 179 23 33 chr13 51549901 51550208 -68194690 + AluJo SINE Alu 1 304 -8 2450 64 14 3 chr13 51550213 51550509 -68194389 + AluY SINE Alu 1 299 -12 2432 82 0 3 chr13 51550668 51550972 -68193926 - AluY SINE Alu -8 303 1 2307 99 3 0 chr13 51551243 51551545 -68193353 - AluSq SINE Alu -10 303 1 2182 87 3 11 chr13 51552075 51552362 -68192536 + AluY SINE Alu 1 285 -26 41 0 0 0 chr13 51552362 51552403 -68192495 + AT_rich Low_complexity Low_complexity 1 41 0 1947 112 0 0 chr13 51552508 51552759 -68192139 + AluSg SINE Alu 1 251 -59 17043 91 0 2 chr13 51553054 51555392 -68189506 - L1P LINE L1 -1403 4743 2409 6676 85 2 13 chr13 51555392 51556591 -68188307 + L1PA7 LINE L1 4958 6151 -3 206 269 54 21 chr13 51558608 51558701 -68186197 + MIR SINE MIR 35 130 -78 2362 80 0 7 chr13 51560502 51560801 -68184097 - AluSx SINE Alu -13 299 3 2064 180 9 0 chr13 51560891 51561235 -68183663 - MER7A DNA MER2_type -1 345 1 362 307 129 12 chr13 51562042 51562205 -68182693 - MER5A DNA MER1_type 0 189 8 2096 134 0 3 chr13 51562269 51562561 -68182337 - AluSx SINE Alu -21 291 1 181 368 0 23 chr13 51562561 51562648 -68182250 - MER5A DNA MER1_type -37 152 68 227 215 149 37 chr13 51563158 51563265 -68181633 - MIR SINE MIR -64 144 26 186 209 0 0 chr13 51563340 51563383 -68181515 + A-rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chr13 51564519 51564545 -68180353 + (CAGCC)n Simple_repeat Simple_repeat 3 28 0 2499 68 7 0 chr13 51565093 51565402 -68179496 - AluY SINE Alu 0 311 1 1155 69 7 7 chr13 51565402 51565547 -68179351 - AluSq/x SINE Alu -167 145 1 927 175 0 0 chr13 51565711 51565854 -68179044 + FRAM SINE Alu 4 146 -30 333 0 0 0 chr13 51565856 51565893 -68179005 + (CA)n Simple_repeat Simple_repeat 2 38 0 1058 162 12 0 chr13 51566303 51566476 -68178422 + AluJb SINE Alu 134 308 -4 186 250 0 23 chr13 51566544 51566588 -68178310 + MIR SINE MIR 82 124 -84 223 326 31 39 chr13 51566981 51567110 -68177788 - MIR SINE MIR -129 133 6 2341 90 0 19 chr13 51567866 51568176 -68176722 + AluSq SINE Alu 1 304 -9 936 232 62 50 chr13 51568347 51568594 -68176304 - MLT1L LTR MaLR -210 405 151 1394 229 43 9 chr13 51568594 51568921 -68175977 - MER58B DNA MER1_type -3 338 1 936 232 62 50 chr13 51568921 51569013 -68175885 - MLT1L LTR MaLR -464 151 62 2419 81 0 10 chr13 51569371 51569681 -68175217 + AluY SINE Alu 2 308 -3 637 317 10 34 chr13 51570170 51570463 -68174435 - LTR67 LTR ERVL -270 287 2 221 214 143 18 chr13 51570477 51570589 -68174309 - L2 LINE L2 -306 2966 2841 1740 161 25 3 chr13 51570662 51570947 -68173951 - AluJo SINE Alu -20 292 2 203 88 29 0 chr13 51571126 51571160 -68173738 + (TC)n Simple_repeat Simple_repeat 2 36 0 1696 146 0 70 chr13 51571626 51571942 -68172956 - AluJo SINE Alu -17 295 2 466 282 114 9 chr13 51572489 51572709 -68172189 + MIR SINE MIR 16 258 -4 457 134 0 24 chr13 51572858 51572940 -68171958 - FLAM_A SINE Alu -19 123 44 426 265 0 80 chr13 51572967 51573129 -68171769 - L2 LINE L2 -1 3312 3164 253 266 83 18 chr13 51573145 51573254 -68171644 + L2 LINE L2 3197 3312 -1 1430 149 55 39 chr13 51574686 51574941 -68169957 - AluJb SINE Alu -22 290 32 2371 70 0 24 chr13 51575003 51575301 -68169597 - AluY SINE Alu -20 291 1 1600 86 4 43 chr13 51577116 51577348 -68167550 - AluSq SINE Alu 0 313 91 7089 114 22 36 chr13 51577366 51578335 -68166563 + L1MA1 LINE L1 4316 5296 -1006 4698 25 0 0 chr13 51578335 51578866 -68166032 + L1PA3 LINE L1 5623 6153 -2 7089 114 22 36 chr13 51578866 51579881 -68165017 + L1MA1 LINE L1 5296 6302 0 454 238 128 80 chr13 51579954 51580181 -68164717 + MLT1H1 LTR MaLR 1 226 -329 2172 116 23 0 chr13 51580181 51580483 -68164415 + AluSc SINE Alu 1 309 0 454 238 128 80 chr13 51580483 51580530 -68164368 + MLT1H1 LTR MaLR 226 269 -286 2090 99 3 50 chr13 51580558 51580880 -68164018 + AluSx SINE Alu 6 312 0 2176 87 0 35 chr13 51580972 51581282 -68163616 + AluSg SINE Alu 3 301 -9 225 265 20 51 chr13 51581876 51581974 -68162924 - MIR SINE MIR -68 140 46 199 284 64 46 chr13 51582282 51582391 -68162507 - L2 LINE L2 -177 3095 2985 2216 70 53 0 chr13 51583076 51583360 -68161538 - AluSp SINE Alu -14 299 1 2144 125 0 0 chr13 51583393 51583680 -68161218 - AluSx SINE Alu -25 287 1 2562 62 3 0 chr13 51583707 51584014 -68160884 + AluY SINE Alu 1 308 -3 325 272 152 51 chr13 51584282 51584440 -68160458 + MER5A DNA MER1_type 5 189 0 226 247 111 0 chr13 51584440 51584521 -68160377 + MIR SINE MIR 102 191 -71 576 233 16 85 chr13 51584542 51584695 -68160203 + MER5A DNA MER1_type 14 153 -36 1246 118 171 49 chr13 51584695 51584958 -68159940 + AluJb SINE Alu 1 295 -17 576 233 16 85 chr13 51584958 51584993 -68159905 + MER5A DNA MER1_type 153 189 0 332 333 18 0 chr13 51584996 51585110 -68159788 + L2 LINE L2 3192 3307 -6 24 53 0 0 chr13 51585479 51585517 -68159381 + AT_rich Low_complexity Low_complexity 1 38 0 315 288 185 7 chr13 51585766 51585912 -68158986 + MIR SINE MIR 79 250 -12 225 163 82 0 chr13 51586900 51586949 -68157949 + HsTC2 DNA Tc2 1792 1844 -54 1295 208 140 60 chr13 51587837 51588175 -68156723 - MLT1G3 LTR MaLR -10 520 143 2073 97 11 4 chr13 51588175 51588478 -68156420 - AluSg SINE Alu 0 305 1 1295 208 140 60 chr13 51588478 51588538 -68156360 - MLT1G3 LTR MaLR -387 143 89 470 267 38 0 chr13 51588503 51588634 -68156264 - MER119 DNA MER1_type -277 306 171 * 511 111 22 11 chr13 51588726 51588816 -68156082 - MER2 DNA MER2_type -134 211 121 1943 144 3 7 chr13 51588816 51589114 -68155784 + AluSx SINE Alu 1 297 -15 2098 117 0 7 chr13 51589186 51589476 -68155422 - AluSx SINE Alu -17 295 8 1758 178 3 10 chr13 51589839 51590142 -68154756 - AluJb SINE Alu -5 307 7 705 218 0 0 chr13 51590378 51590511 -68154387 + FLAM_A SINE Alu 1 133 0 388 218 48 15 chr13 51590594 51590746 -68154152 - L1MD3 LINE L1 -1 7994 7782 1246 221 162 12 chr13 51590768 51591176 -68153722 - L1ME2 LINE L1 0 6164 5696 1671 179 3 29 chr13 51592228 51592541 -68152357 + AluJo SINE Alu 1 305 -7 2077 127 3 3 chr13 51592936 51593243 -68151655 - AluSq SINE Alu -6 307 1 1959 112 0 0 chr13 51593875 51594126 -68150772 + AluSg SINE Alu 1 251 -59 2117 83 22 0 chr13 51594335 51594638 -68150260 - AluSx SINE Alu 0 309 1 27 49 0 0 chr13 51595019 51595060 -68149838 + AT_rich Low_complexity Low_complexity 1 41 0 448 281 101 0 chr13 51595276 51595454 -68149444 + MIR SINE MIR 56 251 -11 212 206 0 0 chr13 51595425 51595459 -68149439 + L2 LINE L2 3227 3260 -12 * 1975 176 99 0 chr13 51596705 51597079 -68147819 - LTR57 LTR ERVL 0 411 1 1328 218 8 8 chr13 51597637 51597898 -68147000 + AluJo SINE Alu 39 299 -13 201 297 68 40 chr13 51598827 51598901 -68145997 + MIR3 SINE MIR 3 78 -130 * 369 250 118 37 chr13 51598889 51599025 -68145873 + MIR SINE MIR 116 262 0 461 217 19 0 chr13 51599506 51599612 -68145286 - L1MA10 LINE L1 -2 6332 6225 441 0 0 0 chr13 51599645 51599694 -68145204 + (CA)n Simple_repeat Simple_repeat 2 50 0 1755 189 26 63 chr13 51599699 51599901 -68144997 - L1ME1 LINE L1 -190 5976 5768 2325 82 0 20 chr13 51599901 51600204 -68144694 - AluSg SINE Alu -13 297 1 1755 189 26 63 chr13 51600204 51600462 -68144436 - L1ME1 LINE L1 -398 5768 5533 252 269 157 9 chr13 51600534 51600642 -68144256 + MIR SINE MIR 134 257 -5 2038 129 27 3 chr13 51600897 51601192 -68143706 - AluSg SINE Alu -8 302 1 200 180 20 20 chr13 51601884 51601934 -68142964 + (TTATA)n Simple_repeat Simple_repeat 1 50 0 1774 169 51 6 chr13 51603140 51603490 -68141408 + MER47A DNA MER2_type 1 366 0 198 0 0 0 chr13 51603764 51603786 -68141112 + (A)n Simple_repeat Simple_repeat 1 22 0 722 153 0 8 chr13 51603949 51604073 -68140825 - AluSg/x SINE Alu 0 309 187 1178 163 17 26 chr13 51604078 51604311 -68140587 - AluJb SINE Alu -81 231 1 262 261 45 23 chr13 51604318 51604406 -68140492 + MER5A DNA MER1_type 56 145 -44 382 273 143 19 chr13 51604425 51604586 -68140312 + MER5A DNA MER1_type 9 189 0 213 289 116 25 chr13 51604986 51605107 -68139791 + L2 LINE L2 2489 2620 -694 208 306 101 38 chr13 51605308 51605517 -68139381 + L2 LINE L2 1794 2015 -1299 419 282 113 31 chr13 51605880 51606075 -68138823 - MLT1L LTR MaLR -10 605 395 265 200 47 24 chr13 51606126 51606211 -68138687 - MLT1L LTR MaLR -339 276 190 353 357 0 0 chr13 51607167 51607335 -68137563 + (TGG)n Simple_repeat Simple_repeat 1 168 0 578 256 14 58 chr13 51608161 51608368 -68136530 - LTR67 LTR ERVL -2 555 358 356 192 39 135 chr13 51608640 51608796 -68136102 - MER69A DNA AcHobo -1 176 36 203 315 0 90 chr13 51608858 51608947 -68135951 + L2 LINE L2 2981 3061 -211 249 154 0 0 chr13 51609102 51609141 -68135757 - Alu SINE Alu -263 39 1 2486 77 0 0 chr13 51609214 51609525 -68135373 - AluY SINE Alu 0 311 1 22 0 0 0 chr13 51609863 51609885 -68135013 + AT_rich Low_complexity Low_complexity 1 22 0 449 286 101 0 chr13 51610101 51610279 -68134619 + MIR SINE MIR 56 251 -11 217 243 0 0 chr13 51610247 51610284 -68134614 + L2 LINE L2 3224 3260 -12 * 21 57 0 0 chr13 51610567 51610602 -68134296 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr13 51611192 51611231 -68133667 + AT_rich Low_complexity Low_complexity 1 39 0 2095 168 79 0 chr13 51611452 51611833 -68133065 - LTR57 LTR ERVL 0 411 1 1344 212 11 8 chr13 51612386 51612650 -68132248 + AluJo SINE Alu 34 298 -14 385 239 116 22 chr13 51613639 51613777 -68131121 + MIR SINE MIR 112 262 0 2132 214 49 42 chr13 51614267 51614416 -68130482 - L1ME2 LINE L1 -9 6155 6008 207 69 0 0 chr13 51614416 51614445 -68130453 + (CA)n Simple_repeat Simple_repeat 2 30 0 2132 214 49 42 chr13 51614445 51614652 -68130246 - L1ME2 LINE L1 -156 6008 5804 2233 96 0 20 chr13 51614652 51614955 -68129943 - AluSg SINE Alu -13 297 1 2132 214 49 42 chr13 51614955 51615213 -68129685 - L1ME2 LINE L1 -360 5804 5536 304 250 130 10 chr13 51615285 51615385 -68129513 + MIR SINE MIR 134 245 -17 2227 96 3 0 chr13 51615677 51615968 -68128930 - AluSq SINE Alu -21 292 1 1600 173 0 47 chr13 51616979 51617297 -68127601 - AluJo SINE Alu -9 303 1 2310 100 0 3 chr13 51617323 51617624 -68127274 - AluSg SINE Alu -10 300 1 21 0 0 0 chr13 51617957 51617978 -68126920 + AT_rich Low_complexity Low_complexity 1 21 0 2084 118 3 3 chr13 51619285 51619573 -68125325 - AluSc SINE Alu -20 289 2 2160 131 0 0 chr13 51619685 51619991 -68124907 - AluSg SINE Alu -4 306 1 2207 129 0 0 chr13 51620102 51620396 -68124502 - AluSx SINE Alu -18 294 1 2220 102 7 7 chr13 51621394 51621698 -68123200 + AluSx SINE Alu 1 304 -8 309 244 13 13 chr13 51621811 51621889 -68123009 + L2 LINE L2 3193 3270 -2 702 274 70 27 chr13 51621899 51622227 -68122671 + HAL1 LINE L1 1441 1782 -725 2072 99 50 0 chr13 51622706 51622988 -68121910 + AluSc SINE Alu 1 296 -13 475 198 0 11 chr13 51623067 51623158 -68121740 + FRAM SINE Alu 71 160 -16 1559 164 39 106 chr13 51623901 51624317 -68120581 + MLT1B LTR MaLR 3 390 0 2336 100 0 0 chr13 51624491 51624791 -68120107 - AluSx SINE Alu -12 300 1 194 138 0 0 chr13 51625395 51625424 -68119474 - MIR SINE MIR -82 180 152 635 165 63 0 chr13 51625455 51625582 -68119316 - MLT1D LTR MaLR 0 505 371 727 138 0 0 chr13 51625598 51625707 -68119191 + FLAM_A SINE Alu 21 129 -13 261 0 0 0 chr13 51625824 51625853 -68119045 + (TA)n Simple_repeat Simple_repeat 1 29 0 1334 186 84 11 chr13 51625853 51626127 -68118771 - AluJb SINE Alu -15 297 4 621 234 125 63 chr13 51626129 51626432 -68118466 - MLT1D LTR MaLR -183 322 1 225 291 12 47 chr13 51626433 51626519 -68118379 - MIR SINE MIR -164 98 16 21 0 0 0 chr13 51626691 51626712 -68118186 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 51627047 51627070 -68117828 + GC_rich Low_complexity Low_complexity 1 23 0 324 249 89 23 chr13 51627081 51627284 -68117614 - LTR26E LTR ERV1 -16 606 356 340 213 65 26 chr13 51627347 51627507 -68117391 - LTR8 LTR ERV1 -399 142 1 2469 50 3 0 chr13 51628129 51628426 -68116472 + AluSp SINE Alu 1 298 -15 208 346 59 10 chr13 51628659 51628760 -68116138 + L2 LINE L2 2286 2391 -923 454 311 74 48 chr13 51628825 51629176 -68115722 + L2 LINE L2 2394 2753 -561 285 344 11 0 chr13 51629221 51629314 -68115584 + L2 LINE L2 2932 3025 -247 560 176 166 95 chr13 51629443 51629948 -68114950 - MER34C LTR ERV1 0 542 8 1789 130 0 96 chr13 51630298 51630621 -68114277 + AluSx SINE Alu 1 292 -20 1006 173 18 0 chr13 51631127 51631295 -68113603 - MER5A DNA MER1_type 0 189 19 925 133 7 27 chr13 51631322 51631472 -68113426 - FRAM SINE Alu -7 169 23 1171 145 40 72 chr13 51633865 51634141 -68110757 - L1MA7 LINE L1 -9 6282 6016 2032 142 39 6 chr13 51634207 51634544 -68110354 - MER7A DNA MER2_type 0 346 1 558 235 124 0 chr13 51635442 51635595 -68109303 + MER5B DNA MER1_type 1 172 -6 21 0 0 0 chr13 51635861 51635882 -68109016 + AT_rich Low_complexity Low_complexity 1 21 0 317 314 66 4 chr13 51635893 51636119 -68108779 - L1ME4a LINE L1 -252 5869 5630 413 259 101 54 chr13 51636239 51636421 -68108477 + L1MC4 LINE L1 7697 7902 -140 2287 105 0 3 chr13 51636421 51636717 -68108181 - AluSg SINE Alu -14 296 2 413 259 101 54 chr13 51636717 51636850 -68108048 + L1MC4 LINE L1 7902 8027 -15 1074 174 0 0 chr13 51636931 51637103 -68107795 + FAM SINE Alu 1 172 -3 2258 79 0 26 chr13 51637107 51637411 -68107487 + AluY SINE Alu 1 296 -15 222 235 20 0 chr13 51638105 51638156 -68106742 + CT-rich Low_complexity Low_complexity 3 54 0 2929 138 48 45 chr13 51638158 51638280 -68106618 - L1MB4 LINE L1 0 6180 6060 240 35 0 0 chr13 51638280 51638309 -68106589 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1951 104 0 78 chr13 51638309 51638616 -68106282 - AluSx SINE Alu -29 283 1 2929 138 48 45 chr13 51638616 51639120 -68105778 - L1MB4 LINE L1 -119 6061 5551 603 241 60 6 chr13 51639519 51639685 -68105213 + MER5B DNA MER1_type 2 176 -2 22 0 0 0 chr13 51639695 51639717 -68105181 + AT_rich Low_complexity Low_complexity 1 22 0 448 138 0 43 chr13 51640039 51640133 -68104765 - L1MC3 LINE L1 0 7785 7696 394 322 40 17 chr13 51640140 51640314 -68104584 + L1M4 LINE L1 5057 5234 -912 745 133 0 0 chr13 51640351 51640464 -68104434 - L1PA10 LINE L1 -8 6160 6048 1644 155 0 34 chr13 51640693 51640958 -68103940 + AluJo SINE Alu 1 256 -56 2298 92 0 7 chr13 51641879 51642174 -68102724 - AluSx SINE Alu -19 293 1 674 168 92 40 chr13 51642801 51642974 -68101924 + L1MC1 LINE L1 6127 6308 -25 2038 102 8 4 chr13 51642976 51643241 -68101657 - AluSq SINE Alu -18 295 30 2421 78 0 0 chr13 51643729 51644025 -68100873 + AluY SINE Alu 1 296 -15 2103 123 0 23 chr13 51644199 51644507 -68100391 - AluSx SINE Alu -11 301 1 269 319 85 0 chr13 51644636 51644730 -68100168 + L2 LINE L2 3169 3270 -2 1169 101 6 0 chr13 51645326 51645485 -68099413 + AluSp SINE Alu 137 296 -17 2220 102 0 0 chr13 51645694 51645978 -68098920 - AluY SINE Alu -27 284 1 1841 162 0 41 chr13 51646070 51646385 -68098513 - AluJo SINE Alu -10 302 1 2002 131 3 3 chr13 51646398 51646688 -68098210 - AluSx SINE Alu -22 290 1 1584 143 42 65 chr13 51646698 51647082 -68097816 - L1MB4 LINE L1 0 6180 5806 192 152 0 0 chr13 51647350 51647383 -68097515 + CT-rich Low_complexity Low_complexity 1 33 0 1788 153 4 11 chr13 51647383 51647658 -68097240 - AluJb SINE Alu -39 273 1 432 204 31 93 chr13 51647864 51647987 -68096911 - L1ME1 LINE L1 -9 6157 6045 1698 158 7 10 chr13 51647987 51648279 -68096619 + AluJo SINE Alu 5 295 -17 432 204 31 93 chr13 51648279 51648317 -68096581 - L1ME1 LINE L1 -121 6045 6006 180 236 127 0 chr13 51648803 51648858 -68096040 - L2 LINE L2 -1 3271 3210 232 282 29 0 chr13 51649160 51649263 -68095635 + (TA)n Simple_repeat Simple_repeat 2 107 0 734 134 21 7 chr13 51650623 51650765 -68094133 - L1MB3 LINE L1 -7 6176 6033 26 82 0 0 chr13 51651086 51651147 -68093751 + AT_rich Low_complexity Low_complexity 1 61 0 25 0 0 0 chr13 51651202 51651227 -68093671 + AT_rich Low_complexity Low_complexity 1 25 0 1934 147 20 0 chr13 51651980 51652272 -68092626 + AluJo SINE Alu 1 298 -14 279 0 0 0 chr13 51652658 51652689 -68092209 + (TG)n Simple_repeat Simple_repeat 1 31 0 22 56 0 0 chr13 51652860 51652896 -68092002 + AT_rich Low_complexity Low_complexity 1 36 0 529 292 29 12 chr13 51653370 51653541 -68091357 + MIR SINE MIR 4 177 -85 1278 183 103 0 chr13 51654243 51654544 -68090354 - L1MD3 LINE L1 -256 7739 7408 301 273 11 0 chr13 51654549 51654637 -68090261 - MLT1F1 LTR MaLR -443 124 36 2719 183 60 38 chr13 51654637 51655331 -68089567 - L1MC3 LINE L1 -813 6972 6263 316 194 69 0 chr13 51655354 51655426 -68089472 + Charlie2 DNA MER1_type 45 121 -2661 1519 219 154 3 chr13 51655544 51656133 -68088765 + Charlie2 DNA MER1_type 1880 2557 -305 540 225 33 0 chr13 51656325 51656476 -68088422 + MLT1B LTR MaLR 22 177 -213 283 233 153 74 chr13 51656491 51656706 -68088192 + Charlie2 DNA MER1_type 2525 2756 -106 189 322 96 17 chr13 51656850 51656965 -68087933 + MIR SINE MIR 52 175 -87 1501 241 93 22 chr13 51657799 51658401 -68086497 - MER20B DNA MER1_type -132 651 7 398 299 45 15 chr13 51658476 51658610 -68086288 - MIR SINE MIR -74 188 51 22 0 0 0 chr13 51659011 51659033 -68085865 + AT_rich Low_complexity Low_complexity 1 22 0 762 154 39 0 chr13 51659121 51659251 -68085647 + AluJo SINE Alu 1 135 -177 287 232 76 92 chr13 51659461 51659498 -68085400 + L2 LINE L2 3132 3168 -145 2218 129 0 3 chr13 51659498 51659809 -68085089 - AluSx SINE Alu -2 310 1 287 232 76 92 chr13 51659809 51659956 -68084942 + L2 LINE L2 3168 3313 0 29 28 0 0 chr13 51660000 51660036 -68084862 + AT_rich Low_complexity Low_complexity 1 36 0 399 97 0 28 chr13 51660237 51660309 -68084589 + L1MB3 LINE L1 6088 6157 -26 2427 59 0 0 chr13 51660733 51661019 -68083879 - AluY SINE Alu -21 290 5 520 157 20 0 chr13 51661029 51661131 -68083767 - MLT1F LTR MaLR 0 542 439 271 336 91 21 chr13 51661217 51661360 -68083538 + L2 LINE L2 2375 2527 -787 1669 154 90 0 chr13 51662011 51662277 -68082621 - AluJo SINE Alu -22 290 1 282 267 67 73 chr13 51662590 51662740 -68082158 + L2 LINE L2 3163 3311 -2 288 254 72 58 chr13 51663327 51663526 -68081372 - L1ME4a LINE L1 -11 6110 5904 2373 89 0 0 chr13 51663526 51663818 -68081080 - AluSg SINE Alu -18 292 1 288 254 72 58 chr13 51663818 51663894 -68081004 - L1ME4a LINE L1 -217 5904 5831 518 289 64 23 chr13 51663962 51664135 -68080763 - MIR SINE MIR -20 242 63 742 192 8 0 chr13 51664239 51664369 -68080529 + FLAM_A SINE Alu 1 131 -2 290 68 23 0 chr13 51664582 51664626 -68080272 - MADE1 DNA Mariner 0 80 36 1990 137 0 3 chr13 51664860 51665145 -68079753 + AluJb SINE Alu 16 299 -13 445 262 36 78 chr13 51665179 51665369 -68079529 - L1ME4a LINE L1 -509 5612 5440 2124 147 0 3 chr13 51665369 51665676 -68079222 - AluSx SINE Alu -6 306 1 445 262 36 78 chr13 51665676 51665817 -68079081 - L1ME4a LINE L1 -681 5440 5295 24 0 0 0 chr13 51665833 51665857 -68079041 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr13 51665900 51665936 -68078962 + AT_rich Low_complexity Low_complexity 1 36 0 188 286 0 52 chr13 51666043 51666120 -68078778 - MIR SINE MIR -133 129 57 418 290 101 23 chr13 51667250 51667467 -68077431 - MLT1I LTR MaLR -26 383 150 845 203 45 11 chr13 51667786 51667963 -68076935 - L2 LINE L2 0 3313 3131 325 285 95 45 chr13 51668488 51668688 -68076210 + L2 LINE L2 3104 3313 0 2427 63 10 10 chr13 51669086 51669387 -68075511 + AluSq SINE Alu 1 301 -12 426 242 10 30 chr13 51669474 51669573 -68075325 - L2 LINE L2 -4 3309 3213 1098 198 25 8 chr13 51669576 51669813 -68075085 - MLT1E3 LTR MaLR 0 624 384 421 192 0 0 chr13 51669822 51669900 -68074998 - FRAM SINE Alu -75 101 24 579 153 8 0 chr13 51669912 51670030 -68074868 - HsTC2 DNA Tc2 -143 1755 1637 1846 142 10 39 chr13 51670107 51670417 -68074481 - AluJb SINE Alu -11 301 1 2468 84 10 0 chr13 51670673 51670982 -68073916 - AluSx SINE Alu 0 312 1 6318 83 2 7 chr13 51671199 51672121 -68072777 - L1P LINE L1 -1206 4940 4023 2368 74 0 0 chr13 51672271 51672575 -68072323 + AluY SINE Alu 1 304 0 2109 171 110 79 chr13 51672577 51672980 -68071918 - L1ME1 LINE L1 -5 6161 5723 1770 130 76 0 chr13 51672980 51673256 -68071642 - AluSx SINE Alu -15 297 1 2109 171 110 79 chr13 51673256 51673588 -68071310 - L1ME1 LINE L1 -443 5723 5403 1996 179 128 96 chr13 51673597 51674214 -68070684 - L1ME1 LINE L1 -856 5290 4695 2447 70 0 10 chr13 51674214 51674528 -68070370 - AluY SINE Alu 0 311 1 1996 179 128 96 chr13 51674528 51674551 -68070347 - L1ME1 LINE L1 -1451 4695 4674 561 168 67 25 chr13 51674551 51674670 -68070228 - FLAM_C SINE Alu -8 125 2 1996 179 128 96 chr13 51674670 51674818 -68070080 - L1ME1 LINE L1 -1472 4674 4532 2105 98 45 11 chr13 51674818 51675105 -68069793 - AluSx SINE Alu -15 297 1 1996 179 128 96 chr13 51675105 51675194 -68069704 - L1ME1 LINE L1 -1614 4532 4382 2246 90 7 13 chr13 51675638 51675948 -68068950 - AluSq SINE Alu -5 308 1 305 291 51 25 chr13 51676001 51676159 -68068739 + L1M4 LINE L1 4425 4586 -1560 1619 141 81 32 chr13 51676168 51676451 -68068447 - AluJb SINE Alu -15 297 1 736 260 213 24 chr13 51676451 51676912 -68067986 - L1ME3A LINE L1 -41 6129 5582 2032 166 74 3 chr13 51676912 51677303 -68067595 + MSTA LTR MaLR 1 419 -9 529 194 182 12 chr13 51677414 51677584 -68067314 - L1ME3A LINE L1 -585 5579 5381 1517 178 165 0 chr13 51677674 51678062 -68066836 + LTR32 LTR ERVL 13 464 -7 326 196 152 11 chr13 51678084 51678176 -68066722 + L1M4 LINE L1 3832 3936 -2210 1167 239 94 76 chr13 51678177 51678901 -68065997 + L1M4 LINE L1 4057 4793 -1353 301 238 58 165 chr13 51679497 51679842 -68065056 - L1M2 LINE L1 -5790 1059 752 433 309 77 13 chr13 51680851 51681082 -68063816 - L2 LINE L2 -268 3045 2794 1278 222 107 59 chr13 51681359 51681903 -68062995 - L1ME3 LINE L1 -2 6160 5591 367 231 0 0 chr13 51681906 51681971 -68062927 + MER5A DNA MER1_type 4 68 -121 1968 88 8 4 chr13 51681971 51682234 -68062664 + AluSg SINE Alu 1 264 -46 211 292 161 84 chr13 51682235 51682879 -68062019 - L2 LINE L2 -493 2821 2128 220 231 179 0 chr13 51682935 51683013 -68061885 - L2 LINE L2 -1340 1974 1883 673 281 151 30 chr13 51683162 51683493 -68061405 + L2 LINE L2 2439 2809 -505 22 0 0 0 chr13 51684819 51684841 -68060057 + AT_rich Low_complexity Low_complexity 1 22 0 865 129 0 16 chr13 51684847 51684971 -68059927 + FLAM_C SINE Alu 1 122 -11 234 0 0 0 chr13 51686720 51686746 -68058152 + (TA)n Simple_repeat Simple_repeat 2 27 0 2625 58 0 3 chr13 51686748 51687060 -68057838 - AluY SINE Alu 0 311 1 1027 235 0 14 chr13 51687197 51687414 -68057484 + MER20 DNA MER1_type 2 215 -4 1967 141 0 26 chr13 51687730 51688043 -68056855 - AluJb SINE Alu -7 305 1 1766 139 78 24 chr13 51688198 51688234 -68056664 - AluSx SINE Alu -1 311 278 222 62 0 0 chr13 51688234 51688266 -68056632 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1766 139 78 24 chr13 51688266 51688524 -68056374 - AluSx SINE Alu -34 278 1 430 197 0 0 chr13 51689454 51689530 -68055368 + L2 LINE L2 3228 3303 -10 992 168 0 0 chr13 51690420 51690569 -68054329 - FRAM SINE Alu -32 144 1 341 281 49 0 chr13 51691799 51691881 -68053017 - L2 LINE L2 -38 3234 3149 265 269 43 0 chr13 51692113 51692213 -68052685 + MIR SINE MIR 83 151 -57 1919 141 38 0 chr13 51693019 51693310 -68051588 - AluSx SINE Alu -10 302 1 1751 108 0 4 chr13 51694270 51694511 -68050387 - AluSg/x SINE Alu -5 305 66 2089 124 3 19 chr13 51694905 51695212 -68049686 - AluSc SINE Alu -7 302 1 530 118 0 0 chr13 51695704 51695780 -68049118 + AluS SINE Alu 224 299 -13 340 202 0 21 chr13 51696176 51696270 -68048628 - MER53 DNA DNA 0 189 98 1989 109 10 20 chr13 51697460 51697762 -68047136 + AluSx SINE Alu 1 299 -13 29 70 0 0 chr13 51698220 51698277 -68046621 + AT_rich Low_complexity Low_complexity 1 57 0 456 258 32 8 chr13 51698426 51698550 -68046348 - MIR SINE MIR -46 216 90 299 331 61 14 chr13 51698584 51698732 -68046166 - MIR SINE MIR -26 236 82 342 296 96 0 chr13 51698865 51698990 -68045908 + MIR SINE MIR 116 252 -10 288 250 223 47 chr13 51699180 51699328 -68045570 + L2 LINE L2 3093 3266 -6 858 186 6 34 chr13 51700159 51700336 -68044562 - AluJb SINE Alu -4 308 137 1995 113 18 0 chr13 51700977 51701251 -68043647 - AluSx SINE Alu -9 303 25 1986 140 0 10 chr13 51702217 51702517 -68042381 + AluJo SINE Alu 3 299 -13 280 215 0 15 chr13 51702520 51702585 -68042313 + L2 LINE L2 3248 3311 -2 799 194 6 24 chr13 51702719 51702884 -68042014 - MER20 DNA MER1_type -52 167 6 192 40 0 0 chr13 51704105 51704130 -68040768 + (TG)n Simple_repeat Simple_repeat 2 26 0 260 205 108 0 chr13 51704145 51704228 -68040670 - L1MD3 LINE L1 -23 7972 7881 238 248 55 55 chr13 51704454 51704563 -68040335 - MIR SINE MIR -49 213 105 270 189 38 0 chr13 51704961 51705014 -68039884 + MIR SINE MIR 93 147 -115 1113 178 78 25 chr13 51705447 51705589 -68039309 + MER33 DNA MER1_type 7 140 -2445 1849 160 6 16 chr13 51705589 51705902 -68038996 - AluJo SINE Alu -2 310 1 1113 178 78 25 chr13 51705902 51706040 -68038858 + MER33 DNA MER1_type 140 302 -22 22 35 0 0 chr13 51707664 51707693 -68037205 + AT_rich Low_complexity Low_complexity 1 29 0 1774 162 14 0 chr13 51707768 51708058 -68036840 - AluJb SINE Alu -18 294 1 1471 177 15 15 chr13 51708091 51708351 -68036547 + AluJb SINE Alu 38 297 -15 662 169 104 7 chr13 51708357 51708511 -68036387 - L1MD1 LINE L1 -7 6629 6461 1221 204 69 11 chr13 51708511 51708771 -68036127 + AluJo SINE Alu 22 296 -16 355 245 75 9 chr13 51708780 51708886 -68036012 - L1MD1 LINE L1 -166 6470 6358 1299 220 79 66 chr13 51708891 51709122 -68035776 - L1MD1 LINE L1 -895 5645 5419 1663 204 0 7 chr13 51709122 51709421 -68035477 - AluJo SINE Alu -15 297 1 1299 220 79 66 chr13 51709421 51709794 -68035104 - L1MD1 LINE L1 -1121 5419 5033 2584 220 70 74 chr13 51709817 51710793 -68034105 - L1MD1 LINE L1 -1794 4746 3775 1624 191 58 0 chr13 51710793 51710965 -68033933 - AluJb SINE Alu -2 310 113 225 83 0 0 chr13 51710965 51711001 -68033897 + (TTTAA)n Simple_repeat Simple_repeat 3 38 0 1624 191 58 0 chr13 51711001 51711121 -68033777 - AluJb SINE Alu -199 113 1 2584 220 70 74 chr13 51711121 51711435 -68033463 - L1MD1 LINE L1 -2765 3775 3461 1707 156 47 7 chr13 51711472 51711748 -68033150 - AluJo SINE Alu -25 287 1 1458 167 40 67 chr13 51711750 51711990 -68032908 - L1MD1 LINE L1 -6179 361 133 1527 179 3 89 chr13 51711990 51712315 -68032583 - AluJo SINE Alu -15 297 1 1458 167 40 67 chr13 51712315 51712445 -68032453 - L1MD1 LINE L1 -6407 133 1 2481 62 13 3 chr13 51713057 51713365 -68031533 + AluSp SINE Alu 1 311 -2 2033 108 36 33 chr13 51715955 51716260 -68028638 + AluSx SINE Alu 1 306 -6 864 206 0 29 chr13 51717129 51717304 -68027594 - FRAM SINE Alu -6 170 1 1491 143 9 13 chr13 51717320 51717550 -68027348 - AluJb SINE Alu -81 231 3 365 235 37 66 chr13 51718437 51718573 -68026325 - MIR SINE MIR -118 144 13 2256 110 7 3 chr13 51718678 51718977 -68025921 - AluSg SINE Alu -10 300 1 719 260 51 5 chr13 51719740 51719936 -68024962 + MIR SINE MIR 1 205 -57 192 77 0 0 chr13 51719980 51720006 -68024892 + (TG)n Simple_repeat Simple_repeat 1 26 0 288 270 34 0 chr13 51720046 51720135 -68024763 + MER46C DNA MER2_type 148 239 -99 555 140 348 0 chr13 51720135 51720299 -68024599 - Tigger7 DNA MER2_type 0 2487 2267 422 206 0 0 chr13 51720303 51720376 -68024522 - Tigger7 DNA MER2_type -2413 74 2 254 167 192 0 chr13 51720383 51720461 -68024437 + MER46C DNA MER2_type 245 337 -1 2387 63 7 3 chr13 51720955 51721256 -68023642 - AluY SINE Alu -9 302 1 275 252 166 26 chr13 51721620 51721771 -68023127 + MIR SINE MIR 20 191 -71 180 250 36 107 chr13 51722712 51722796 -68022102 + L2 LINE L2 3220 3297 -16 923 189 13 0 chr13 51722899 51723058 -68021840 - FAM SINE Alu -16 169 9 180 0 0 0 chr13 51723183 51723203 -68021695 + (T)n Simple_repeat Simple_repeat 1 20 0 1909 162 7 7 chr13 51723264 51723573 -68021325 - AluJo SINE Alu -3 309 1 189 0 0 0 chr13 51723576 51723597 -68021301 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 481 234 97 8 chr13 51724053 51724177 -68020721 - L2 LINE L2 0 3313 3179 263 270 0 0 chr13 51724540 51724603 -68020295 - MIR3 SINE MIR -15 193 131 1532 153 80 28 chr13 51724717 51725004 -68019894 - AluJo SINE Alu -10 302 1 266 383 33 33 chr13 51725090 51725273 -68019625 - MER5A DNA MER1_type -1 188 6 291 28 0 0 chr13 51728060 51728096 -68016802 + (CA)n Simple_repeat Simple_repeat 2 37 0 253 272 114 50 chr13 51728128 51728330 -68016568 + L2 LINE L2 2844 3058 -214 2084 102 27 17 chr13 51731049 51731343 -68013555 + AluSq SINE Alu 1 297 -16 270 275 53 0 chr13 51732352 51732483 -68012415 + L1MC4a LINE L1 5335 5472 -2336 188 263 26 97 chr13 51732668 51732782 -68012116 - MIR SINE MIR -2 260 155 306 249 114 85 chr13 51732782 51732983 -68011915 + L1MC4a LINE L1 5689 5895 -1913 255 79 0 0 chr13 51732997 51733035 -68011863 + (TG)n Simple_repeat Simple_repeat 2 39 0 2130 120 3 3 chr13 51733175 51733466 -68011432 - AluSx SINE Alu -21 291 1 199 230 54 40 chr13 51733787 51733861 -68011037 + L2 LINE L2 3198 3272 0 575 319 83 11 chr13 51734509 51734907 -68009991 + MLT1L LTR MaLR 70 602 -13 293 315 56 0 chr13 51734966 51735113 -68009785 - MIR SINE MIR -67 141 33 2250 100 7 0 chr13 51735175 51735464 -68009434 + AluSq SINE Alu 1 291 -22 514 203 62 0 chr13 51735497 51735625 -68009273 + MIR SINE MIR 109 244 -18 523 254 6 73 chr13 51735765 51735942 -68008956 + L2 LINE L2 3149 3313 0 937 110 55 22 chr13 51736457 51736639 -68008259 - L1MB3 LINE L1 -2 6181 5994 27 62 0 0 chr13 51739325 51739373 -68005525 + AT_rich Low_complexity Low_complexity 1 48 0 258 361 0 0 chr13 51739639 51739758 -68005140 - L1M4 LINE L1 -2311 3835 3717 1441 123 106 49 chr13 51739766 51740116 -68004782 - L1MA3 LINE L1 0 6305 5936 * 30617 103 14 51 chr13 51740111 51746500 -67998398 - L1PA7 LINE L1 -3 6151 14 264 346 157 19 chr13 51746693 51747005 -67997893 + L3 LINE CR1 900 1254 -323 445 315 73 23 chr13 51747558 51747777 -67997121 + L3 LINE CR1 1247 1476 -101 1850 170 0 3 chr13 51747851 51748145 -67996753 - AluJb SINE Alu -16 296 4 1551 139 131 4 chr13 51748403 51748677 -67996221 + AluSx SINE Alu 1 309 -3 584 238 137 54 chr13 51748904 51749047 -67995851 - L2 LINE L2 -1 3312 3182 2368 61 0 61 chr13 51749047 51749375 -67995523 + AluY SINE Alu 1 308 -3 2068 108 34 0 chr13 51749376 51749673 -67995225 + AluSx SINE Alu 1 307 -5 584 238 137 54 chr13 51749673 51749804 -67995094 - L2 LINE L2 -130 3183 3013 213 235 49 59 chr13 51749830 51749932 -67994966 + L2 LINE L2 3007 3107 -165 561 239 24 54 chr13 51750886 51751053 -67993845 - MER5B DNA MER1_type -14 164 3 3595 137 31 25 chr13 51751165 51751739 -67993159 + L1M2 LINE L1 1393 1973 -4876 2021 104 20 30 chr13 51751739 51752037 -67992861 + AluSx SINE Alu 1 295 -17 3595 137 31 25 chr13 51752037 51752135 -67992763 + L1M2 LINE L1 1973 2069 -4780 1199 174 31 10 chr13 51752135 51752331 -67992567 + AluJo SINE Alu 1 200 -112 3263 96 48 16 chr13 51752341 51752841 -67992057 + L1MA4A LINE L1 5782 6297 -6 2359 56 32 0 chr13 51752862 51753147 -67991751 + AluSc SINE Alu 1 294 -15 692 193 47 0 chr13 51753148 51753298 -67991600 - MER5A DNA MER1_type -32 157 1 1586 236 204 9 chr13 51753909 51754448 -67990450 + MER20B DNA MER1_type 1 644 -139 236 167 64 51 chr13 51754479 51754557 -67990341 - L1MC5 LINE L1 -30 7931 7853 7222 28 8 0 chr13 51754587 51755424 -67989474 - L1PA4 LINE L1 -3 6152 5309 350 295 101 0 chr13 51755998 51756127 -67988771 + L2 LINE L2 3123 3264 -8 395 316 53 29 chr13 51758358 51758529 -67986369 + MER5B DNA MER1_type 4 178 0 272 174 43 22 chr13 51759339 51759431 -67985467 + (TA)n Simple_repeat Simple_repeat 2 95 0 1501 81 58 27 chr13 51760324 51760547 -67984351 + MER30 DNA MER1_type 1 230 0 2345 95 0 10 chr13 51760583 51760752 -67984146 - AluSx SINE Alu -10 302 136 2469 61 0 3 chr13 51760752 51761049 -67983849 - AluY SINE Alu -15 296 1 2345 95 0 10 chr13 51761049 51761184 -67983714 - AluSx SINE Alu -176 136 1 194 0 39 0 chr13 51763230 51763256 -67981642 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 330 317 78 0 chr13 51763404 51763571 -67981327 - MIR3 SINE MIR -25 183 4 27 62 0 0 chr13 51763673 51763721 -67981177 + GC_rich Low_complexity Low_complexity 1 48 0 252 0 0 0 chr13 51765244 51765272 -67979626 + (CA)n Simple_repeat Simple_repeat 1 28 0 306 73 0 0 chr13 51765304 51765345 -67979553 + (TG)n Simple_repeat Simple_repeat 2 42 0 872 269 117 49 chr13 51766304 51766423 -67978475 + L1MC4a LINE L1 5291 5400 -2408 2274 118 3 0 chr13 51766423 51766729 -67978169 - AluSx SINE Alu -5 307 1 872 269 117 49 chr13 51766729 51767240 -67977658 + L1MC4a LINE L1 5400 5964 -1844 1939 174 66 24 chr13 51767884 51768264 -67976634 + MSTD LTR MaLR 1 396 0 662 308 53 84 chr13 51768383 51768988 -67975910 - L2 LINE L2 -43 3229 2607 2367 98 0 16 chr13 51768988 51769305 -67975593 - AluSx SINE Alu 0 312 1 1395 186 49 35 chr13 51769314 51769599 -67975299 - AluJo SINE Alu -23 289 1 662 308 53 84 chr13 51769599 51769907 -67974991 - L2 LINE L2 -673 2599 2300 2262 89 17 0 chr13 51770148 51770441 -67974457 - AluSx SINE Alu -12 300 3 1593 202 48 11 chr13 51770795 51771147 -67973751 - MLT1A1 LTR MaLR 0 365 1 2376 89 0 0 chr13 51771730 51772023 -67972875 - AluSg SINE Alu -17 293 1 288 276 98 6 chr13 51772527 51772690 -67972208 + L2 LINE L2 2609 2786 -528 2291 88 0 3 chr13 51772860 51773205 -67971693 + AluSq SINE Alu 1 344 0 493 244 0 24 chr13 51774918 51775041 -67969857 + L2 LINE L2 3194 3313 0 266 263 42 32 chr13 51775044 51775139 -67969759 - MIR SINE MIR -116 146 51 2026 178 16 24 chr13 51775253 51775630 -67969268 + MLT1A2 LTR MaLR 1 374 0 242 252 150 31 chr13 51775862 51775989 -67968909 - MIR3 SINE MIR -62 146 5 2100 88 37 0 chr13 51776210 51776533 -67968365 + AluY SINE Alu 1 333 0 332 339 87 7 chr13 51776553 51776830 -67968068 + L1ME4a LINE L1 5651 5949 -172 259 306 28 28 chr13 51777233 51777341 -67967557 + L3 LINE CR1 1454 1561 -16 364 274 8 129 chr13 51777466 51777544 -67967354 + MIR SINE MIR 27 113 -149 2123 108 17 14 chr13 51777544 51777841 -67967057 - AluSq SINE Alu -15 298 1 2236 110 0 7 chr13 51777844 51778143 -67966755 - AluSx SINE Alu -14 298 2 364 274 8 129 chr13 51778143 51778217 -67966681 + MIR SINE MIR 115 143 -119 1451 113 19 0 chr13 51778217 51778430 -67966468 + AluSg/x SINE Alu 89 305 -5 364 274 8 129 chr13 51778430 51778527 -67966371 + MIR SINE MIR 143 250 -12 2210 153 67 34 chr13 51780030 51780144 -67964754 - MSTB1 LTR MaLR 0 432 323 2458 86 0 0 chr13 51780144 51780446 -67964452 + AluSx SINE Alu 1 302 -10 2210 153 67 34 chr13 51780446 51780748 -67964150 - MSTB1 LTR MaLR -109 323 2 218 281 0 16 chr13 51780957 51781021 -67963877 + MIR3 SINE MIR 3 65 -143 435 216 0 59 chr13 51781257 51781359 -67963539 + MIR SINE MIR 73 168 -94 1593 201 23 16 chr13 51781431 51781739 -67963159 - AluJb SINE Alu -2 310 1 2321 107 0 0 chr13 51782241 51782540 -67962358 + AluSg SINE Alu 1 299 -11 2175 103 0 3 chr13 51782555 51782873 -67962025 + AluSx SINE Alu 4 320 0 333 0 0 0 chr13 51783594 51783631 -67961267 + (TG)n Simple_repeat Simple_repeat 2 38 0 491 298 25 12 chr13 51783709 51783870 -67961028 + MIR SINE MIR 97 259 -3 2084 250 113 50 chr13 51784028 51785125 -67959773 - HAL1 LINE L1 -1317 1190 25 336 304 9 27 chr13 51785139 51785251 -67959647 - MER5B DNA MER1_type -33 145 36 249 83 0 0 chr13 51785944 51785980 -67958918 + (CA)n Simple_repeat Simple_repeat 2 37 0 1058 261 157 42 chr13 51786350 51786827 -67958071 - MLT1H1 LTR MaLR 0 595 20 371 267 14 122 chr13 51787295 51787516 -67957382 - MIR SINE MIR -48 214 18 2209 132 0 0 chr13 51788322 51788625 -67956273 + AluSx SINE Alu 1 303 -9 23 33 0 0 chr13 51789157 51789187 -67955711 + AT_rich Low_complexity Low_complexity 1 30 0 1584 164 13 50 chr13 51789510 51789686 -67955212 - AluJo SINE Alu -25 287 125 2206 116 0 3 chr13 51789686 51789980 -67954918 + AluSx SINE Alu 1 293 -19 1584 164 13 50 chr13 51789980 51790101 -67954797 - AluJo SINE Alu -187 125 1 215 269 65 11 chr13 51790117 51790210 -67954688 - L2 LINE L2 -2 3270 3173 379 354 45 44 chr13 51790649 51791209 -67953689 + L2 LINE L2 2507 3060 -212 256 170 21 0 chr13 51791545 51791592 -67953306 - MLT1K LTR MaLR -32 556 509 2128 141 33 22 chr13 51791975 51792336 -67952562 + MLT1A1 LTR MaLR 1 365 0 506 266 106 55 chr13 51793105 51793304 -67951594 - Charlie2 DNA MER1_type -2653 209 1 887 106 0 8 chr13 51793709 51793841 -67951057 - MER41A LTR ERV1 0 554 424 728 91 9 0 chr13 51793842 51793848 -67951050 + (TTCC)n Simple_repeat Simple_repeat 1 117 0 728 91 9 0 chr13 51793848 51793958 -67950940 + (TTCC)n Simple_repeat Simple_repeat 4 114 0 1782 166 11 0 chr13 51793995 51794272 -67950626 - AluJb SINE Alu -32 280 1 2220 116 3 0 chr13 51794403 51794706 -67950192 + AluSp SINE Alu 1 304 -9 248 293 13 0 chr13 51794910 51794985 -67949913 + MER116 DNA Mariner 3 78 -2 244 48 48 0 chr13 51795724 51795766 -67949132 + (TC)n Simple_repeat Simple_repeat 1 44 0 225 65 0 0 chr13 51795766 51795797 -67949101 + (TG)n Simple_repeat Simple_repeat 2 32 0 4770 117 3 3 chr13 51795799 51796492 -67948406 - L1PA16 LINE L1 -9 6157 5465 620 214 24 48 chr13 51796883 51796917 -67947981 + MER103 DNA DNA 2 35 -131 1112 293 84 11 chr13 51796917 51797371 -67947527 + LTR16C LTR ERVL 3 489 -2 620 214 24 48 chr13 51797371 51797504 -67947394 + MER103 DNA DNA 35 165 -1 327 381 20 7 chr13 51797597 51797744 -67947154 - MIR3 SINE MIR -56 152 4 4892 138 15 88 chr13 51797929 51797969 -67946929 - L1MB3 LINE L1 -2 6181 6140 1840 141 26 13 chr13 51797969 51798275 -67946623 + AluSx SINE Alu 1 310 -2 4892 138 15 88 chr13 51798275 51798498 -67946400 - L1MB3 LINE L1 -43 6140 5902 2940 105 21 2 chr13 51798498 51798918 -67945980 - MSTA LTR MaLR 0 428 1 4892 138 15 88 chr13 51798918 51799490 -67945408 - L1MB3 LINE L1 -281 5902 5427 2128 97 7 0 chr13 51799490 51799779 -67945119 + AluSp SINE Alu 1 291 -22 4892 138 15 88 chr13 51799779 51799942 -67944956 - L1MB3 LINE L1 -756 5427 5254 1104 246 12 4 chr13 51799966 51800222 -67944676 - Charlie1b DNA MER1_type -265 258 1 608 200 168 0 chr13 51800337 51800492 -67944406 + MER5A DNA MER1_type 9 189 0 815 259 161 33 chr13 51801611 51802032 -67942866 + MLT1L LTR MaLR 141 615 0 2153 100 3 0 chr13 51802246 51802546 -67942352 + AluY SINE Alu 1 301 -10 224 277 11 75 chr13 51803085 51803179 -67941719 + MIR SINE MIR 86 173 -89 478 298 69 49 chr13 51804641 51804886 -67940012 + MIR SINE MIR 13 262 0 542 227 23 0 chr13 51805840 51805972 -67938926 + MIR SINE MIR 128 262 0 350 341 100 6 chr13 51806172 51806342 -67938556 - MIR3 SINE MIR -8 200 15 2148 116 3 0 chr13 51806537 51806838 -67938060 - AluSx SINE Alu -10 302 1 531 269 62 22 chr13 51807760 51807987 -67936911 + L1M4b LINE L1 23 258 -6601 396 0 0 0 chr13 51808063 51808107 -67936791 + (TG)n Simple_repeat Simple_repeat 2 45 0 419 258 83 23 chr13 51808575 51808707 -67936191 + MIR SINE MIR 2 141 -121 216 318 45 0 chr13 51808681 51808747 -67936151 - MIR SINE MIR -62 200 132 * 1467 240 160 55 chr13 51809013 51809575 -67935323 - MLT1E2 LTR MaLR 0 626 6 422 252 16 16 chr13 51810017 51810140 -67934758 + LTR67 LTR ERVL 434 556 -1 194 263 0 12 chr13 51811459 51811539 -67933359 + CT-rich Low_complexity Low_complexity 2 80 0 234 229 86 0 chr13 51812207 51812277 -67932621 + L2 LINE L2 3238 3313 0 180 274 94 60 chr13 51812776 51812893 -67932005 + MIR3 SINE MIR 13 133 -75 397 291 111 23 chr13 51813005 51813177 -67931721 + L2 LINE L2 3049 3235 -37 274 226 0 21 chr13 51813199 51813292 -67931606 + GA-rich Low_complexity Low_complexity 5 95 0 225 132 0 0 chr13 51813846 51813884 -67931014 + (TG)n Simple_repeat Simple_repeat 2 39 0 1903 149 3 0 chr13 51814027 51814335 -67930563 + AluSx SINE Alu 1 309 -3 213 194 0 0 chr13 51814435 51814471 -67930427 + polypyrimidine Low_complexity Low_complexity 2 37 0 258 81 0 0 chr13 51815654 51815691 -67929207 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 1977 101 4 0 chr13 51815770 51816048 -67928850 + AluSc SINE Alu 19 297 -12 1852 133 0 37 chr13 51816057 51816380 -67928518 + AluJo SINE Alu 1 311 -1 2323 93 0 0 chr13 51816383 51816694 -67928204 + AluY SINE Alu 1 311 0 573 244 77 18 chr13 51816839 51817007 -67927891 + MIR SINE MIR 15 192 -70 397 254 63 16 chr13 51817499 51817625 -67927273 + MIR SINE MIR 16 147 -115 1435 156 28 35 chr13 51817631 51817919 -67926979 + AluJo SINE Alu 7 292 -20 229 322 50 28 chr13 51819371 51819551 -67925347 + L2 LINE L2 1920 2103 -1211 2229 117 0 0 chr13 51819600 51819908 -67924990 - AluSc SINE Alu -1 308 1 21 0 0 0 chr13 51821069 51821090 -67923808 + AT_rich Low_complexity Low_complexity 1 21 0 2517 49 0 0 chr13 51821157 51821461 -67923437 - AluY SINE Alu -7 304 1 294 253 27 100 chr13 51822587 51822737 -67922161 - MIR SINE MIR -70 192 54 1982 114 50 0 chr13 51823134 51823431 -67921467 - AluSx SINE Alu 0 312 1 818 114 15 0 chr13 51823810 51823942 -67920956 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 256 339 0 0 chr13 51823944 51824006 -67920892 + C-rich Low_complexity Low_complexity 5 66 0 666 58 0 0 chr13 51824106 51824193 -67920705 + (TTCC)n Simple_repeat Simple_repeat 1 87 0 336 327 115 56 chr13 51824204 51824543 -67920355 - L2 LINE L2 -19 3253 2895 580 235 75 55 chr13 51824605 51824948 -67919950 + MLT1J2 LTR MaLR 64 440 -10 251 91 0 23 chr13 51824983 51825027 -67919871 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 531 243 95 0 chr13 51825030 51825178 -67919720 + MER103 DNA DNA 3 164 -2 1990 141 0 0 chr13 51825608 51825905 -67918993 + AluSx SINE Alu 1 297 -15 2822 217 121 8 chr13 51825914 51826716 -67918182 - L1ME3A LINE L1 -17 6153 5261 2215 98 0 3 chr13 51827096 51827401 -67917497 - AluSg SINE Alu -6 304 1 1055 254 195 22 chr13 51827401 51827541 -67917357 - L2 LINE L2 -9 3304 3189 2148 70 42 0 chr13 51827541 51827825 -67917073 - AluY SINE Alu -15 296 1 1055 254 195 22 chr13 51827825 51828417 -67916481 - L2 LINE L2 -124 3189 2427 1906 145 0 10 chr13 51828417 51828721 -67916177 + AluJo SINE Alu 10 310 -2 1055 254 195 22 chr13 51828721 51828740 -67916158 - L2 LINE L2 -886 2427 2413 382 274 34 48 chr13 51830083 51830229 -67914669 - MIR3 SINE MIR -63 145 2 355 263 132 69 chr13 51830512 51830693 -67914205 + MIR3 SINE MIR 1 199 -9 277 327 126 13 chr13 51831341 51831500 -67913398 - MIR3 SINE MIR -9 199 23 455 313 8 8 chr13 51831567 51831698 -67913200 + MIR3 SINE MIR 15 145 -63 2255 98 7 0 chr13 51831867 51832174 -67912724 + AluSg SINE Alu 1 309 -1 184 258 32 32 chr13 51832224 51832286 -67912612 + L3b LINE CR1 1292 1353 -230 2320 94 0 0 chr13 51832540 51832848 -67912050 + AluSx SINE Alu 1 308 -4 2067 82 0 78 chr13 51832924 51833243 -67911655 + AluY SINE Alu 1 294 -17 683 292 105 0 chr13 51833244 51833463 -67911435 + MIR SINE MIR 21 262 0 218 192 19 0 chr13 51835174 51835226 -67909672 + (CACCAT)n Simple_repeat Simple_repeat 1 53 0 320 252 25 33 chr13 51835248 51835365 -67909533 + MIR SINE MIR 32 147 -61 262 282 35 58 chr13 51835560 51835734 -67909164 + L2 LINE L2 2878 3047 -225 1246 178 63 49 chr13 51838283 51838570 -67906328 - AluJb SINE Alu -11 301 11 220 318 47 73 chr13 51838647 51838839 -67906059 - L2 LINE L2 -100 3213 3027 7197 110 180 83 chr13 51838839 51840408 -67904490 - pTR5 LTR ERV1 0 2438 142 2080 89 0 38 chr13 51840466 51840782 -67904116 + AluY SINE Alu 1 304 -7 335 130 0 0 chr13 51841325 51841371 -67903527 + Alu SINE Alu 1 46 -256 311 253 141 57 chr13 51841883 51842086 -67902812 + HAL1 LINE L1 1140 1377 -1130 9864 75 9 26 chr13 51842086 51843482 -67901416 + SVA Other Other 15 1386 0 311 253 141 57 chr13 51843482 51843575 -67901323 + HAL1 LINE L1 1377 1461 -1046 207 198 23 105 chr13 51843619 51843705 -67901193 + CT-rich Low_complexity Low_complexity 3 81 0 847 280 67 93 chr13 51843706 51844199 -67900699 + MLT1K LTR MaLR 86 565 -23 508 241 18 85 chr13 51844206 51844461 -67900437 + HAL1b LINE L1 400 1664 -706 256 151 430 0 chr13 51844943 51845029 -67899869 + L2 LINE L2 3191 3313 0 1934 126 7 0 chr13 51845659 51845952 -67898946 - AluSq SINE Alu -18 295 1 213 39 0 0 chr13 51846146 51846172 -67898726 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2077 111 10 26 chr13 51846185 51846492 -67898406 - AluSx SINE Alu -10 302 1 231 284 21 21 chr13 51846539 51846634 -67898264 + L1ME4a LINE L1 2258 2352 -3794 419 277 119 45 chr13 51846676 51847572 -67897326 + L1ME4a LINE L1 4222 5226 -948 234 0 0 0 chr13 51847572 51847598 -67897300 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 419 277 119 45 chr13 51847598 51847883 -67897015 + L1ME4a LINE L1 5226 5488 -686 608 211 39 26 chr13 51848154 51848310 -67896588 - MLT1L LTR MaLR -295 320 163 367 283 165 42 chr13 51848365 51848806 -67896092 + L1ME4a LINE L1 5551 6065 -56 507 235 65 144 chr13 51848817 51848987 -67895911 - MLT1L LTR MaLR -50 565 383 1741 98 19 0 chr13 51848987 51849253 -67895645 - L1MA4A LINE L1 -6 6297 6027 507 235 65 144 chr13 51849253 51849279 -67895619 - MLT1L LTR MaLR -232 383 357 2007 228 69 37 chr13 51849279 51849844 -67895054 - MER119 DNA MER1_type 0 583 1 507 235 65 144 chr13 51849844 51849952 -67894946 - MLT1L LTR MaLR -258 357 284 1582 236 72 12 chr13 51849964 51850383 -67894515 - L1ME1 LINE L1 -5 6161 5718 2490 106 9 6 chr13 51850384 51850734 -67894164 + THE1B LTR MaLR 1 351 -13 3946 152 62 0 chr13 51850734 51851971 -67892927 + pTR5 LTR ERV1 748 2468 0 390 208 0 0 chr13 51851992 51852069 -67892829 - L1ME1 LINE L1 -445 5721 5645 358 278 130 18 chr13 51852070 51852239 -67892659 - MLT1L LTR MaLR -309 306 119 270 247 65 54 chr13 51852998 51853091 -67891807 + L2 LINE L2 3199 3292 -21 276 161 345 0 chr13 51853308 51853395 -67891503 - MIR3 SINE MIR -7 201 85 2373 72 0 0 chr13 51853755 51854061 -67890837 + AluY SINE Alu 1 306 -5 1031 209 130 0 chr13 51854872 51855102 -67889796 + MIR SINE MIR 1 260 -2 3011 171 62 9 chr13 51855184 51855840 -67889058 - Charlie1a DNA MER1_type 0 1455 765 228 184 0 0 chr13 51855881 51855930 -67888968 + CT-rich Low_complexity Low_complexity 2 50 0 785 157 25 0 chr13 51855933 51856054 -67888844 - AluJb SINE Alu -188 124 1 1787 210 68 24 chr13 51856059 51856469 -67888429 - Charlie1a DNA MER1_type -1027 428 1 2161 126 47 19 chr13 51856577 51856942 -67887956 - THE1C LTR MaLR 0 375 1 2801 185 30 4 chr13 51858978 51859471 -67885427 - MLT2B2 LTR ERVL 0 515 10 467 335 39 22 chr13 51859475 51859654 -67885244 - L3 LINE CR1 -2 1575 1394 279 346 25 37 chr13 51859682 51859844 -67885054 - L3 LINE CR1 -393 1184 1025 191 35 0 35 chr13 51859919 51859948 -67884950 + (AGGGGG)n Simple_repeat Simple_repeat 3 30 0 4032 113 4 73 chr13 51860088 51860645 -67884253 + MER41B LTR ERV1 1 504 -131 2166 115 7 0 chr13 51860645 51860950 -67883948 - AluSq SINE Alu -4 309 3 4032 113 4 73 chr13 51860950 51861074 -67883824 + MER41B LTR ERV1 504 635 0 571 204 191 31 chr13 51861191 51861299 -67883599 + MER5A DNA MER1_type 1 90 -99 279 0 0 0 chr13 51861299 51861330 -67883568 + (TG)n Simple_repeat Simple_repeat 2 32 0 719 179 0 0 chr13 51861330 51861447 -67883451 - FLAM_A SINE Alu -15 118 2 571 204 191 31 chr13 51861447 51861499 -67883399 + MER5A DNA MER1_type 89 188 -1 408 266 124 72 chr13 51861506 51861598 -67883300 + LTR16A1 LTR ERVL 6 92 -365 2250 75 0 0 chr13 51861598 51861911 -67882987 - AluY SINE Alu 0 313 1 408 266 124 72 chr13 51861911 51862148 -67882750 + LTR16A1 LTR ERVL 92 353 -104 803 186 0 7 chr13 51862150 51862290 -67882608 - FLAM_C SINE Alu -4 139 1 337 293 0 0 chr13 51862302 51862384 -67882514 + LTR16A1 LTR ERVL 376 457 0 332 228 35 70 chr13 51863375 51863489 -67881409 - L2 LINE L2 -2 3311 3202 288 318 111 48 chr13 51863705 51864057 -67880841 - L2 LINE L2 -347 2967 2594 367 283 166 13 chr13 51864092 51864255 -67880643 + MIR SINE MIR 45 231 -31 2118 93 0 3 chr13 51864266 51864555 -67880343 - AluSg SINE Alu -21 289 2 180 111 0 0 chr13 51864573 51864600 -67880298 + (A)n Simple_repeat Simple_repeat 1 27 0 1245 243 49 54 chr13 51864626 51865033 -67879865 - LTR16C LTR ERVL -2 489 85 279 324 39 70 chr13 51865154 51865413 -67879485 - L2 LINE L2 -778 2536 2286 240 184 0 0 chr13 51865970 51866019 -67878879 + (TATG)n Simple_repeat Simple_repeat 2 50 0 226 288 0 30 chr13 51866573 51866639 -67878259 - MIR SINE MIR -16 246 183 762 307 0 9 chr13 51867564 51867782 -67877116 + MIR SINE MIR 47 262 0 349 235 61 53 chr13 51867927 51868059 -67876839 - L1MC5 LINE L1 -96 7865 7733 24 53 0 0 chr13 51868867 51868905 -67875993 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr13 51870684 51870708 -67874190 + GC_rich Low_complexity Low_complexity 1 24 0 593 286 36 55 chr13 51877324 51877436 -67867462 + MIR SINE MIR 3 111 -151 1879 120 0 40 chr13 51877436 51877761 -67867137 - AluSx SINE Alu 0 312 1 593 286 36 55 chr13 51877761 51877868 -67867030 + MIR SINE MIR 111 218 -44 267 337 48 0 chr13 51877900 51877983 -67866915 - MIR3 SINE MIR -29 179 93 2110 166 26 18 chr13 51878428 51878813 -67866085 - MLT1B LTR MaLR -2 388 1 251 273 15 0 chr13 51878815 51878881 -67866017 - L2 LINE L2 -1 3312 3246 3725 158 76 13 chr13 51878883 51879631 -67865267 + L1MC3 LINE L1 6979 7773 -12 374 208 40 163 chr13 51879805 51880007 -67864891 - L2 LINE L2 -175 3097 2921 1251 248 10 10 chr13 51882719 51883009 -67861889 - MLT1I LTR MaLR 0 409 120 273 119 0 0 chr13 51883174 51883216 -67861682 + (T)n Simple_repeat Simple_repeat 1 42 0 506 283 103 30 chr13 51885489 51885722 -67859176 - MIR SINE MIR -2 260 11 1904 121 48 0 chr13 51886069 51886359 -67858539 - AluSx SINE Alu -5 307 4 696 261 49 5 chr13 51886498 51886682 -67858216 - MER91A DNA MER1_type -2 194 3 570 130 28 0 chr13 51887984 51888092 -67856806 - L1MA4A LINE L1 -11 6292 6182 1570 211 16 0 chr13 51888093 51888415 -67856483 - L1PB4 LINE L1 -105 6051 5725 1548 248 68 22 chr13 51888760 51888986 -67855912 + MLT1J LTR MaLR 24 238 -273 1306 197 0 0 chr13 51888986 51889209 -67855689 - MER58A DNA MER1_type -1 223 1 1548 248 68 22 chr13 51889209 51889397 -67855501 + MLT1J LTR MaLR 238 457 -54 2066 87 6 62 chr13 51890107 51890428 -67854470 - AluSq SINE Alu -10 303 1 241 280 13 0 chr13 51890549 51890624 -67854274 + L3b LINE CR1 1190 1265 -318 2088 143 45 3 chr13 51890635 51890991 -67853907 + L1PA15 LINE L1 5793 6163 -2 410 70 0 99 chr13 51891218 51891289 -67853609 - AluS SINE Alu -246 67 4 593 355 10 0 chr13 51891321 51891524 -67853374 + MIR SINE MIR 47 251 -11 679 259 24 131 chr13 51891703 51891993 -67852905 + L2 LINE L2 3014 3272 0 274 291 89 0 chr13 51894380 51894459 -67850439 + L2 LINE L2 3201 3286 -27 873 283 48 58 chr13 51894856 51895290 -67849608 - L2 LINE L2 -49 3264 2835 1136 323 54 10 chr13 51895497 51895996 -67848902 - LTR33 LTR ERVL 0 521 1 203 221 303 57 chr13 51896804 51897085 -67847813 + L2 LINE L2 2949 3298 -15 1283 246 59 33 chr13 51898809 51899081 -67845817 - L1ME LINE L1 -4393 2745 2455 1572 206 24 7 chr13 51899081 51899368 -67845530 - AluJb SINE Alu -19 293 2 1283 246 59 33 chr13 51899368 51899554 -67845344 - L1ME LINE L1 -4683 2455 2275 21 0 0 0 chr13 51899555 51899576 -67845322 + AT_rich Low_complexity Low_complexity 1 21 0 242 301 0 0 chr13 51899601 51899674 -67845224 + T-rich Low_complexity Low_complexity 1 73 0 653 288 47 0 chr13 51899689 51899904 -67844994 - L1ME LINE L1 -4868 2270 2046 989 176 39 11 chr13 51899907 51900089 -67844809 + MER76 LTR ERV 14 200 -488 1772 175 6 19 chr13 51900098 51900412 -67844486 - AluJo SINE Alu -2 310 1 1014 260 39 24 chr13 51900413 51900744 -67844154 + MER76 LTR ERV 342 677 -11 767 272 50 3 chr13 51900767 51901088 -67843810 - L1ME LINE L1 -4970 1966 1616 638 202 9 0 chr13 51901096 51901205 -67843693 + FLAM_A SINE Alu 13 122 -20 237 267 125 8 chr13 51901307 51901427 -67843471 - L1ME LINE L1 -5298 1561 1428 258 105 0 0 chr13 51901450 51901488 -67843410 + (TG)n Simple_repeat Simple_repeat 2 39 0 304 398 55 6 chr13 51901981 51902345 -67842553 - L1ME LINE L1 -5941 1197 816 2492 62 7 10 chr13 51902492 51902801 -67842097 - AluY SINE Alu -3 308 1 804 209 8 57 chr13 51902964 51903208 -67841690 + L1MC5 LINE L1 7692 7923 -38 297 0 0 0 chr13 51903832 51903865 -67841033 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 183 274 24 48 chr13 51903929 51904013 -67840885 - L2 LINE L2 -3 3269 3188 183 129 0 0 chr13 51904330 51904361 -67840537 + (ATG)n Simple_repeat Simple_repeat 2 32 0 501 192 24 51 chr13 51904658 51904816 -67840082 - MIR SINE MIR -61 147 31 292 227 118 50 chr13 51906222 51906341 -67838557 - MIR SINE MIR -111 151 25 358 197 45 83 chr13 51906443 51906575 -67838323 + LTR33 LTR ERVL 1 127 -394 * 1028 228 65 8 chr13 51906573 51906836 -67838062 + LTR33 LTR ERVL 244 521 0 516 307 88 30 chr13 51910430 51910815 -67834083 - MLT1J LTR MaLR 0 511 59 4085 146 9 0 chr13 51911713 51912342 -67832556 - MER41B LTR ERV1 0 635 1 2279 99 7 0 chr13 51914350 51914644 -67830254 + AluSq SINE Alu 9 304 -9 2409 151 26 30 chr13 51914819 51915284 -67829614 - L1MB4 LINE L1 -1 6179 5717 2140 159 11 19 chr13 51915290 51915660 -67829238 - L1MB4 LINE L1 -531 5652 5286 465 256 92 43 chr13 51916047 51916254 -67828644 - L2 LINE L2 0 3313 3097 212 286 0 0 chr13 51916654 51916710 -67828188 + L2 LINE L2 3242 3297 -16 23 0 0 0 chr13 51919046 51919069 -67825829 + AT_rich Low_complexity Low_complexity 1 23 0 637 287 60 0 chr13 51919760 51919976 -67824922 - MIR SINE MIR -12 250 22 504 299 126 19 chr13 51920222 51920653 -67824245 + L2 LINE L2 2593 3077 -195 1920 147 3 29 chr13 51920849 51921155 -67823743 - AluJo SINE Alu -14 298 1 2207 90 7 0 chr13 51922303 51922653 -67822245 - AluSg SINE Alu 0 352 1 246 293 132 42 chr13 51922667 51922685 -67822213 - L1ME3A LINE L1 0 6170 6155 441 0 0 0 chr13 51922685 51922734 -67822164 + (TG)n Simple_repeat Simple_repeat 1 49 0 246 293 132 42 chr13 51922734 51922927 -67821971 - L1ME3A LINE L1 -15 6155 5940 1027 271 47 28 chr13 51922985 51923200 -67821698 - L1MD2 LINE L1 -387 5783 5692 2168 128 0 0 chr13 51923200 51923504 -67821394 - AluSx SINE Alu -8 304 1 1027 271 47 28 chr13 51923504 51923732 -67821166 - L1MD2 LINE L1 -478 5692 5470 459 223 151 7 chr13 51924852 51924991 -67819907 + MER5A DNA MER1_type 30 188 -1 233 233 93 12 chr13 51925475 51925561 -67819337 + MER5A DNA MER1_type 65 157 -32 2516 81 0 0 chr13 51925648 51925958 -67818940 - AluY SINE Alu -1 310 1 2329 75 0 7 chr13 51926022 51926317 -67818581 - AluY SINE Alu -18 293 1 1033 169 27 0 chr13 51926393 51926577 -67818321 + MER5A DNA MER1_type 1 189 0 417 304 107 18 chr13 51927133 51927301 -67817597 - MIR3 SINE MIR -4 204 22 591 251 48 18 chr13 51927628 51927795 -67817103 + MER45A DNA AcHobo 1 172 -6 436 207 95 101 chr13 51927956 51928125 -67816773 - MIR SINE MIR -90 172 5 253 360 103 7 chr13 51928733 51928869 -67816029 - L2 LINE L2 -3 3269 3121 236 250 0 0 chr13 51931538 51931602 -67813296 + L1MC4a LINE L1 5869 5932 -1876 2465 63 3 0 chr13 51931703 51932004 -67812894 + AluSp SINE Alu 2 303 -10 288 308 57 13 chr13 51932574 51932733 -67812165 + L3 LINE CR1 1316 1481 -96 764 185 96 11 chr13 51932750 51932928 -67811970 + Charlie5 DNA MER1_type 1 193 -2419 701 197 0 8 chr13 51932946 51933068 -67811830 - FLAM_A SINE Alu -8 125 5 779 183 143 0 chr13 51933091 51933321 -67811577 + Charlie5 DNA MER1_type 2354 2616 0 331 330 94 9 chr13 51935174 51935205 -67809693 - MIR SINE MIR -27 235 208 2087 106 35 0 chr13 51935205 51935488 -67809410 - AluSx SINE Alu -19 293 1 331 330 94 9 chr13 51935488 51935668 -67809230 - MIR SINE MIR -54 208 6 298 304 161 0 chr13 51935655 51935823 -67809075 - L3b LINE CR1 -168 1415 1221 * 238 330 0 10 chr13 51936062 51936159 -67808739 - L2 LINE L2 -182 3090 2995 2191 79 0 4 chr13 51936444 51936711 -67808187 + AluY SINE Alu 1 266 -45 329 175 63 0 chr13 51936818 51936881 -67808017 + Alu SINE Alu 235 301 -1 439 258 78 14 chr13 51937023 51937352 -67807546 - L1MB8 LINE L1 -151 6013 5668 1497 205 81 40 chr13 51938023 51938467 -67806431 - MLT1C LTR MaLR 0 467 6 2549 153 61 67 chr13 51938974 51939093 -67805805 + MLT1D LTR MaLR 1 119 -386 2159 197 76 5 chr13 51939093 51939529 -67805369 - MLT1C LTR MaLR 0 467 1 2549 153 61 67 chr13 51939529 51939600 -67805298 + MLT1D LTR MaLR 119 189 -316 1687 176 39 23 chr13 51939600 51939906 -67804992 + AluJo SINE Alu 1 311 -1 2549 153 61 67 chr13 51939906 51940222 -67804676 + MLT1D LTR MaLR 189 505 0 2250 76 40 23 chr13 51940473 51940777 -67804121 - AluY SINE Alu -2 309 1 347 320 67 13 chr13 51940911 51941061 -67803837 - MIR3 SINE MIR -32 176 19 180 0 0 0 chr13 51941345 51941365 -67803533 + (T)n Simple_repeat Simple_repeat 1 20 0 370 253 18 46 chr13 51941704 51941852 -67803046 + MIR SINE MIR 31 176 -55 2296 106 3 0 chr13 51941927 51942220 -67802678 + AluSg SINE Alu 1 294 -16 1718 169 121 6 chr13 51942275 51942630 -67802268 - MSTD LTR MaLR 0 396 1 818 309 84 54 chr13 51942780 51943096 -67801802 - L2 LINE L2 -219 3053 2748 329 0 24 0 chr13 51943096 51943137 -67801761 + (TG)n Simple_repeat Simple_repeat 1 42 0 818 309 84 54 chr13 51943137 51943684 -67801214 - L2 LINE L2 -524 2748 2154 305 229 36 0 chr13 51943695 51943778 -67801120 - L2 LINE L2 -1293 2021 1936 524 214 119 0 chr13 51943846 51943972 -67800926 - MIR SINE MIR -110 152 12 542 240 23 0 chr13 51944244 51944373 -67800525 - MER94 DNA DNA 0 134 3 1651 214 15 42 chr13 51944374 51944780 -67800118 + MLT2C1 LTR ERVL 3 397 0 451 258 68 0 chr13 51944880 51945028 -67799870 + MER20B DNA MER1_type 37 197 -22 333 0 0 0 chr13 51945284 51945321 -67799577 + (CA)n Simple_repeat Simple_repeat 1 37 0 1734 99 0 5 chr13 51945616 51945839 -67799059 - AluSc SINE Alu -87 222 1 1803 170 13 29 chr13 51946992 51947303 -67797595 - AluJo SINE Alu -6 306 1 198 71 0 0 chr13 51947340 51947368 -67797530 + (CAT)n Simple_repeat Simple_repeat 2 29 0 240 336 95 26 chr13 51947370 51947486 -67797412 - MIR SINE MIR -116 146 23 279 0 0 0 chr13 51948740 51948771 -67796127 + (TG)n Simple_repeat Simple_repeat 1 31 0 864 250 19 5 chr13 51948912 51949124 -67795774 + MER20 DNA MER1_type 5 219 0 346 277 214 14 chr13 51949585 51949805 -67795093 + L2 LINE L2 3050 3313 0 222 250 67 42 chr13 51950821 51950941 -67793957 - L2 LINE L2 0 3313 3191 341 231 12 17 chr13 51951059 51951091 -67793807 + CT-rich Low_complexity Low_complexity 1 32 -922 1838 181 69 82 chr13 51951091 51951296 -67793602 + MLT1D LTR MaLR 1 207 -298 1725 136 54 0 chr13 51951296 51951576 -67793322 + AluJb SINE Alu 5 299 -13 1838 181 69 82 chr13 51951576 51951879 -67793019 + MLT1D LTR MaLR 207 502 -3 341 231 12 17 chr13 51951879 51952019 -67792879 + CT-rich Low_complexity Low_complexity 32 954 0 201 229 0 0 chr13 51952219 51952267 -67792631 + GA-rich Low_complexity Low_complexity 2 49 0 1639 126 4 0 chr13 51952398 51952644 -67792254 - AluSp SINE Alu -10 303 57 377 310 18 127 chr13 51952848 51953132 -67791766 + L2 LINE L2 2980 3232 -40 408 331 172 8 chr13 51953184 51953544 -67791354 - L2 LINE L2 -964 2350 1932 1342 165 84 40 chr13 51954169 51954490 -67790408 - MER2 DNA MER2_type -10 335 1 22 0 0 0 chr13 51955022 51955044 -67789854 + AT_rich Low_complexity Low_complexity 1 22 0 471 315 0 82 chr13 51959202 51959233 -67785665 - L2 LINE L2 0 3272 3240 1820 123 25 0 chr13 51959233 51959535 -67785363 + AluSx SINE Alu 1 309 0 471 315 0 82 chr13 51959535 51959686 -67785212 - L2 LINE L2 -32 3240 3104 261 241 111 46 chr13 51959693 51959801 -67785097 + MIR3 SINE MIR 88 202 -6 202 246 140 79 chr13 51960061 51960175 -67784723 + L2 LINE L2 2149 2269 -1045 180 325 182 39 chr13 51960266 51960469 -67784429 + L2 LINE L2 3082 3313 0 1692 195 0 3 chr13 51960657 51960970 -67783928 + AluJo SINE Alu 1 312 0 265 254 27 45 chr13 51960977 51961087 -67783811 - LTR16C LTR ERVL -34 457 350 345 47 0 0 chr13 51961137 51961180 -67783718 + (CAA)n Simple_repeat Simple_repeat 3 45 0 3269 168 16 5 chr13 51961461 51962016 -67782882 + MER68 LTR ERV1 1 561 -1 1671 169 13 23 chr13 51963135 51963443 -67781455 - AluJo SINE Alu -6 306 2 288 278 127 16 chr13 51963612 51963738 -67781160 + L2 LINE L2 2916 3055 -217 199 292 77 15 chr13 51963731 51963796 -67781102 - MIR SINE MIR -108 100 32 * 846 252 59 28 chr13 51963806 51964060 -67780838 + MIR SINE MIR 1 262 0 292 284 114 0 chr13 51964482 51964570 -67780328 + MIR SINE MIR 34 131 -131 211 209 0 0 chr13 51964666 51964709 -67780189 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 309 253 77 0 chr13 51965953 51966044 -67778854 - MER20B DNA MER1_type -642 141 44 496 315 28 6 chr13 51966515 51966693 -67778205 + MER5A DNA MER1_type 1 182 -7 324 360 58 0 chr13 51966704 51966843 -67778055 - L3 LINE CR1 -59 1518 1372 566 179 132 0 chr13 51967223 51967329 -67777569 + FLAM_A SINE Alu 1 120 -13 864 328 64 48 chr13 51967373 51967892 -67777006 - L3 LINE CR1 -316 1261 735 293 328 66 97 chr13 51968515 51968774 -67776124 - L2 LINE L2 0 3272 3022 1377 202 30 4 chr13 51968875 51969137 -67775761 - THE1A LTR MaLR -86 269 1 213 235 0 0 chr13 51969242 51969293 -67775605 + (TAA)n Simple_repeat Simple_repeat 2 52 0 484 322 40 0 chr13 51969296 51969448 -67775450 - MIR SINE MIR -14 248 91 1166 334 115 18 chr13 51969468 51970297 -67774601 - L2 LINE L2 -505 2809 1901 2115 188 30 26 chr13 51970297 51970760 -67774138 - MLT1C LTR MaLR -2 465 1 181 325 63 40 chr13 51970764 51970890 -67774008 - L2 LINE L2 -1411 1903 1775 4057 102 27 0 chr13 51970890 51971481 -67773417 + L1MA2 LINE L1 5698 6304 0 399 246 52 77 chr13 51971507 51971711 -67773187 + MIR3 SINE MIR 10 205 -57 206 250 50 0 chr13 51972701 51972761 -67772137 - MER5A DNA MER1_type -94 95 33 188 260 68 14 chr13 51972886 51972959 -67771939 - MER5A DNA MER1_type -102 87 11 2111 74 3 11 chr13 51973440 51973752 -67771146 + AluSg1 SINE Alu 1 310 0 271 293 52 9 chr13 51974233 51974349 -67770549 - MIR SINE MIR -70 138 18 279 233 0 0 chr13 51975159 51975219 -67769679 - MER91 DNA MER1_type 0 140 81 305 232 0 0 chr13 51975761 51975817 -67769081 - MIR SINE MIR -61 147 92 203 293 0 81 chr13 51975939 51976038 -67768860 + MIR3 SINE MIR 110 200 -8 318 271 8 85 chr13 51976405 51976534 -67768364 + MER77 LTR ERV1 79 197 -408 * 1083 258 75 95 chr13 51976507 51976918 -67767980 + MER21B LTR ERV1 98 495 -368 1824 164 0 0 chr13 51976918 51977217 -67767681 + AluSx SINE Alu 1 299 -13 1083 258 75 95 chr13 51977217 51977414 -67767484 + MER21B LTR ERV1 495 694 -169 4497 134 14 21 chr13 51977480 51978191 -67766707 - MER50 LTR ERV1 -28 706 1 736 263 96 5 chr13 51978397 51978595 -67766303 + MIR SINE MIR 11 226 -36 5151 74 1 1 chr13 51978599 51979262 -67765636 + L1PA8 LINE L1 5509 6171 -1 536 328 109 13 chr13 51979333 51979571 -67765327 + MIR SINE MIR 2 262 0 300 322 51 0 chr13 51981541 51981659 -67763239 - MIR3 SINE MIR -35 173 50 1172 151 5 19 chr13 51981900 51982105 -67762793 - AluJo SINE Alu -8 304 103 1174 171 88 107 chr13 51982107 51982564 -67762334 - LTR7 LTR ERV1 -2 448 1 3641 116 14 9 chr13 51982564 51983118 -67761780 - HERVH LTR ERV1 0 7713 7157 1569 138 35 0 chr13 51983111 51983372 -67761526 - HERVH LTR ERV1 -1697 6016 5747 * 6686 106 11 8 chr13 51983372 51984662 -67760236 - HERVH LTR ERV1 -2287 4258 3685 484 179 116 45 chr13 51984663 51984775 -67760123 - AluJo SINE Alu -192 120 1 449 285 32 65 chr13 51985080 51985266 -67759632 + MER91A DNA MER1_type 17 196 0 2683 169 40 16 chr13 51985374 51985997 -67758901 - L1MA9 LINE L1 -21 6291 5558 279 0 0 0 chr13 51986160 51986191 -67758707 + (TG)n Simple_repeat Simple_repeat 2 32 0 283 266 138 11 chr13 51987872 51987966 -67756932 - L2 LINE L2 0 3313 3208 214 301 114 41 chr13 51989082 51989205 -67755693 + MIR SINE MIR 11 142 -120 186 227 0 0 chr13 51990399 51990443 -67754455 + CT-rich Low_complexity Low_complexity 5 48 0 265 291 225 35 chr13 51990450 51990588 -67754310 + L2 LINE L2 2553 2663 -651 405 0 0 0 chr13 51990588 51990633 -67754265 + (CA)n Simple_repeat Simple_repeat 2 46 0 265 291 225 35 chr13 51990633 51990752 -67754146 + L2 LINE L2 2663 2859 -455 690 210 61 33 chr13 51991095 51991276 -67753622 - MER53 DNA DNA 0 189 4 354 336 159 28 chr13 51991853 51992136 -67752762 - L1ME LINE L1 -420 5701 5382 288 346 13 44 chr13 51992154 51992313 -67752585 + L2 LINE L2 2709 2862 -452 227 308 143 33 chr13 51992348 51992439 -67752459 + L2 LINE L2 3153 3253 -19 1419 81 4 136 chr13 51993090 51993284 -67751614 + L1PB2 LINE L1 5913 6062 -89 2033 121 24 0 chr13 51993284 51993582 -67751316 + AluSc SINE Alu 1 305 -4 1419 81 4 136 chr13 51993582 51993660 -67751238 + L1PB2 LINE L1 6062 6149 -2 1303 199 0 15 chr13 51995490 51995761 -67749137 - AluJo SINE Alu -6 306 40 203 61 30 0 chr13 51996809 51996842 -67748056 + (TG)n Simple_repeat Simple_repeat 2 35 0 2075 113 23 0 chr13 51997530 51997832 -67747066 - AluSc SINE Alu 0 309 1 229 289 72 58 chr13 51998616 51998910 -67745988 + L2 LINE L2 2924 3303 -10 25 0 0 0 chr13 52001595 52001620 -67743278 + AT_rich Low_complexity Low_complexity 1 25 0 696 196 127 0 chr13 52002213 52002374 -67742524 + MER5A DNA MER1_type 4 189 0 336 292 169 19 chr13 52002550 52002704 -67742194 + MIR SINE MIR 28 204 -58 192 125 0 0 chr13 52002742 52002774 -67742124 + (ATG)n Simple_repeat Simple_repeat 1 32 0 1946 142 3 24 chr13 52002880 52003175 -67741723 + AluJo SINE Alu 9 297 -15 21 0 0 0 chr13 52003731 52003752 -67741146 + AT_rich Low_complexity Low_complexity 1 21 0 783 257 77 18 chr13 52004551 52004773 -67740125 + MIR SINE MIR 2 236 -26 250 231 0 0 chr13 52004884 52004936 -67739962 - L2 LINE L2 0 3313 3262 587 186 10 0 chr13 52005453 52005550 -67739348 - Tigger7 DNA MER2_type -1 2486 2389 * 1719 180 0 0 chr13 52005548 52005815 -67739083 - Tigger7 DNA MER2_type -466 267 1 2453 168 2 57 chr13 52007422 52007881 -67737017 + Tigger2a DNA MER2_type 1 434 0 1979 113 0 45 chr13 52007996 52008306 -67736592 - AluSx SINE Alu -16 296 1 335 252 92 0 chr13 52008479 52008610 -67736288 - HAL1 LINE L1 -360 2147 2005 296 273 73 18 chr13 52008741 52008851 -67736047 + L2 LINE L2 3198 3313 0 2802 105 6 0 chr13 52008949 52009310 -67735588 - THE1B LTR MaLR -1 363 1 373 323 8 8 chr13 52009826 52009953 -67734945 + L2 LINE L2 3164 3290 -23 21 71 0 0 chr13 52010328 52010370 -67734528 + AT_rich Low_complexity Low_complexity 1 42 0 1718 286 65 29 chr13 52010818 52011483 -67733415 - L1ME3A LINE L1 -219 5951 5312 559 214 54 12 chr13 52011483 52011651 -67733247 - MER104 DNA MER2_type -2 178 4 1718 286 65 29 chr13 52011651 52011789 -67733109 - L1ME3A LINE L1 -858 5312 5180 774 172 28 7 chr13 52011789 52011934 -67732964 - L1PA16 LINE L1 -9 6157 6010 1718 286 65 29 chr13 52011934 52012247 -67732651 - L1ME3A LINE L1 -990 5180 4785 459 200 79 55 chr13 52012275 52012440 -67732458 + MER69A DNA AcHobo 9 177 0 997 283 42 30 chr13 52012446 52012940 -67731958 - L1ME3A LINE L1 -1380 4766 4267 2151 97 4 0 chr13 52012940 52013219 -67731679 - AluSg SINE Alu -14 296 17 722 289 98 26 chr13 52013219 52013713 -67731185 - L1ME3A LINE L1 -2451 3695 3169 868 315 87 39 chr13 52013758 52014878 -67730020 - L1ME LINE L1 -454 5716 4525 492 309 0 14 chr13 52017767 52017906 -67726992 - MER5B DNA MER1_type -40 138 2 295 401 94 10 chr13 52017981 52018183 -67726715 + L2 LINE L2 3054 3272 0 191 238 32 48 chr13 52020311 52020374 -67724524 - L2 LINE L2 -10 3303 3242 325 273 173 32 chr13 52020426 52020646 -67724252 + MIR SINE MIR 2 252 -10 218 277 148 0 chr13 52020783 52020884 -67724014 - MIR3 SINE MIR -1 207 92 186 311 165 29 chr13 52020965 52021068 -67723830 - MER5A DNA MER1_type -2 187 71 259 283 158 13 chr13 52021127 52021279 -67723619 + MIR3 SINE MIR 16 189 -19 268 210 99 49 chr13 52021595 52021676 -67723222 - MER103 DNA DNA -13 153 69 475 292 91 8 chr13 52021927 52022170 -67722728 + L3b LINE CR1 1179 1441 -142 720 320 201 20 chr13 52022328 52022816 -67722082 - L3 LINE CR1 -13 1564 989 934 298 159 12 chr13 52023379 52023875 -67721023 - L3 LINE CR1 -595 982 414 382 295 67 99 chr13 52024123 52024435 -67720463 + L2 LINE L2 2886 3187 -85 321 206 192 0 chr13 52024548 52024621 -67720277 + MIR3 SINE MIR 85 171 -37 216 220 187 22 chr13 52024801 52024856 -67720042 + MIR SINE MIR 91 136 -126 2646 123 5 14 chr13 52024856 52025223 -67719675 + THE1B LTR MaLR 1 364 0 216 220 187 22 chr13 52025223 52025258 -67719640 + MIR SINE MIR 136 196 -66 327 215 295 20 chr13 52025331 52025480 -67719418 - MIR SINE MIR -72 190 1 276 324 0 0 chr13 52026146 52026217 -67718681 - MIR SINE MIR -108 154 84 267 348 54 0 chr13 52026379 52026491 -67718407 - MIR SINE MIR -63 145 28 2419 80 3 0 chr13 52027445 52027744 -67717154 - AluSp SINE Alu -1 312 13 1566 270 67 57 chr13 52027766 52028629 -67716269 + L2 LINE L2 2435 3300 -13 180 0 0 0 chr13 52028629 52028649 -67716249 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 688 299 108 0 chr13 52029553 52029784 -67715114 + MIR SINE MIR 7 262 0 183 85 64 0 chr13 52029971 52030018 -67714880 + (TA)n Simple_repeat Simple_repeat 2 51 0 2402 42 0 7 chr13 52031219 52031528 -67713370 - AluY SINE Alu 0 307 1 601 285 26 0 chr13 52032173 52032324 -67712574 - L2 LINE L2 -1 3312 3158 547 204 15 83 chr13 52032339 52032471 -67712427 + L2 LINE L2 3189 3311 -2 762 345 72 17 chr13 52032505 52032966 -67711932 - L2 LINE L2 -437 2877 2392 192 40 0 0 chr13 52033229 52033254 -67711644 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 1528 184 32 23 chr13 52033264 52033573 -67711325 - AluJo SINE Alu 0 312 1 245 271 59 12 chr13 52034808 52034893 -67710005 + L2 LINE L2 3166 3254 -18 2186 119 0 0 chr13 52035723 52036017 -67708881 - AluSx SINE Alu -18 294 1 194 236 69 42 chr13 52036136 52036208 -67708690 + MIR SINE MIR 110 183 -79 2025 169 107 26 chr13 52037886 52038305 -67706593 - MLT2C2 LTR ERVL -11 453 1 2313 99 3 19 chr13 52038500 52038814 -67706084 - AluSx SINE Alu -3 309 1 2133 117 0 0 chr13 52038917 52039243 -67705655 - AluSg SINE Alu 0 326 1 656 242 37 64 chr13 52039244 52039541 -67705357 - L1ME3A LINE L1 -6 6164 5876 2017 185 52 79 chr13 52041005 52041524 -67703374 + MLT1D LTR MaLR 1 505 0 352 316 34 17 chr13 52041524 52041641 -67703257 + L2 LINE L2 3142 3260 -12 21 36 0 0 chr13 52042160 52042188 -67702710 + AT_rich Low_complexity Low_complexity 1 28 0 334 260 39 0 chr13 52042602 52042706 -67702192 + MIR3 SINE MIR 51 158 -50 228 301 19 19 chr13 52042735 52042838 -67702060 + L2 LINE L2 2728 2830 -484 1271 166 38 76 chr13 52043228 52043542 -67701356 + MER33 DNA MER1_type 1 302 -22 3308 278 72 26 chr13 52044482 52044831 -67700067 + L2 LINE L2 1759 2091 -1222 396 0 0 0 chr13 52044831 52044875 -67700023 + (TG)n Simple_repeat Simple_repeat 1 44 0 1562 179 3 41 chr13 52044875 52045165 -67699733 - AluJo SINE Alu -33 279 1 3308 278 72 26 chr13 52045165 52046304 -67698594 + L2 LINE L2 2090 3312 -1 374 152 0 13 chr13 52046395 52046474 -67698424 + (CA)n Simple_repeat Simple_repeat 1 78 0 803 180 60 7 chr13 52047067 52047217 -67697681 + MER45A DNA AcHobo 2 159 -19 568 304 33 49 chr13 52047655 52047898 -67697000 - MER102b DNA MER1_type 0 341 103 1608 163 42 10 chr13 52048227 52048540 -67696358 - MER33 DNA MER1_type -1 323 1 1333 224 76 14 chr13 52048710 52049054 -67695844 - MLT1A1 LTR MaLR 0 365 1 293 330 85 0 chr13 52050281 52050375 -67694523 - L2 LINE L2 -13 3259 3158 1823 178 7 0 chr13 52052244 52052548 -67692350 - AluJb SINE Alu -6 306 1 189 226 0 0 chr13 52053681 52053734 -67691164 + (CCCCAG)n Simple_repeat Simple_repeat 3 55 0 337 265 93 62 chr13 52054004 52054166 -67690732 - MER5B DNA MER1_type -6 172 6 418 265 70 49 chr13 52054952 52055011 -67689887 - MIR SINE MIR -10 252 196 2404 100 0 0 chr13 52055011 52055321 -67689577 - AluSg SINE Alu 0 310 1 418 265 70 49 chr13 52055321 52055446 -67689452 - MIR SINE MIR -66 196 64 229 200 40 20 chr13 52056339 52056389 -67688509 - L1PBa LINE L1 -6188 675 625 392 265 241 0 chr13 52058264 52058434 -67686464 - MIR SINE MIR -11 251 41 2623 43 10 0 chr13 52058499 52058802 -67686096 + AluY SINE Alu 1 306 -5 287 317 24 21 chr13 52059541 52059749 -67685149 + CT-rich Low_complexity Low_complexity 1 208 0 277 325 7 33 chr13 52059803 52059954 -67684944 + CT-rich Low_complexity Low_complexity 4 150 0 1935 126 0 10 chr13 52060036 52060338 -67684560 - L1MA2 LINE L1 0 6304 6006 304 292 15 46 chr13 52061486 52061675 -67683223 - MIR3 SINE MIR -59 149 1 370 306 163 6 chr13 52062267 52062427 -67682471 - MIR SINE MIR -48 214 30 391 113 99 28 chr13 52062893 52062964 -67681934 - MER20 DNA MER1_type -77 142 67 1954 162 26 3 chr13 52063026 52063366 -67681532 - MER7A DNA MER2_type 0 346 1 1203 235 68 9 chr13 52064119 52064443 -67680455 - MER2 DNA MER2_type -1 343 1 967 186 48 11 chr13 52065294 52065482 -67679416 + MER20 DNA MER1_type 21 215 -4 4768 134 15 9 chr13 52065588 52066343 -67678555 + L1PA13 LINE L1 5386 6144 -19 205 213 21 0 chr13 52068420 52068467 -67676431 + CT-rich Low_complexity Low_complexity 4 51 0 379 214 22 0 chr13 52068769 52068858 -67676040 + MIR SINE MIR 118 208 -54 205 383 35 14 chr13 52069686 52069827 -67675071 - MIR3 SINE MIR -30 178 35 257 232 37 12 chr13 52071287 52071369 -67673529 - L2 LINE L2 0 3313 3230 389 245 108 0 chr13 52071468 52071607 -67673291 - MIR SINE MIR -56 206 53 294 276 20 0 chr13 52072398 52072496 -67672402 + (TAG)n Simple_repeat Simple_repeat 1 100 0 31 0 0 0 chr13 52072919 52072950 -67671948 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr13 52076789 52076817 -67668081 + AT_rich Low_complexity Low_complexity 1 28 0 1197 250 11 11 chr13 52077861 52078141 -67666757 - L1ME1 LINE L1 -10 6156 5877 464 324 36 31 chr13 52078468 52078693 -67666205 + MIR SINE MIR 6 231 -31 816 164 0 14 chr13 52079947 52080093 -67664805 - L1MA9 LINE L1 0 6312 6169 869 261 105 17 chr13 52080471 52080766 -67664132 - MLT1J2 LTR MaLR -121 329 9 1820 146 0 57 chr13 52081436 52081751 -67663147 - AluSx SINE Alu -15 297 1 2308 179 65 70 chr13 52081937 52082552 -67662346 - LTR9 LTR ERV1 0 612 1 1712 167 29 0 chr13 52084193 52084319 -67660579 + AluJb SINE Alu 1 122 -190 225 0 0 0 chr13 52084319 52084344 -67660554 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1712 167 29 0 chr13 52084344 52084492 -67660406 + AluJb SINE Alu 122 283 -29 450 232 0 11 chr13 52084496 52084591 -67660307 - MER94 DNA DNA -40 94 1 250 139 0 0 chr13 52085177 52085220 -67659678 - MER4-int LTR ERV1 -5444 1154 1112 572 252 130 17 chr13 52085255 52085485 -67659413 + MIR SINE MIR 1 256 -6 533 267 19 19 chr13 52086545 52086706 -67658192 - MIR3 SINE MIR 0 208 48 492 307 62 33 chr13 52087169 52087407 -67657491 + MIR SINE MIR 9 260 -2 276 234 105 24 chr13 52087548 52087672 -67657226 - L1ME4a LINE L1 -178 5943 5810 672 228 118 29 chr13 52087754 52088000 -67656898 - L1ME4a LINE L1 -294 5827 5560 2142 146 0 0 chr13 52088697 52088998 -67655900 - AluSx SINE Alu -11 301 1 257 343 10 0 chr13 52089015 52089117 -67655781 + L2 LINE L2 2628 2730 -584 523 259 60 50 chr13 52089811 52090012 -67654886 - MIR SINE MIR -13 249 47 216 175 0 0 chr13 52090495 52090535 -67654363 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 320 234 47 104 chr13 52090589 52090681 -67654217 + MIR SINE MIR 63 159 -103 1392 249 92 9 chr13 52090681 52091106 -67653792 - LTR40b LTR ERVL 0 462 3 320 234 47 104 chr13 52091106 52091156 -67653742 + MIR SINE MIR 159 194 -68 1293 208 102 47 chr13 52091156 52091540 -67653358 - MLT1I LTR MaLR -2 407 3 320 234 47 104 chr13 52091540 52091588 -67653310 + MIR SINE MIR 194 243 -19 22 56 0 0 chr13 52091760 52091796 -67653102 + AT_rich Low_complexity Low_complexity 1 36 0 245 378 8 8 chr13 52092103 52092222 -67652676 - L2 LINE L2 -18 3254 3136 202 274 94 66 chr13 52092604 52092816 -67652082 - MIR SINE MIR -13 249 32 218 291 146 18 chr13 52093042 52093152 -67651746 - L2 LINE L2 -8 3264 3141 255 343 29 29 chr13 52094519 52094659 -67650239 + L2 LINE L2 2606 2745 -569 233 376 40 8 chr13 52095019 52095144 -67649754 + L2 LINE L2 3144 3272 0 267 357 13 6 chr13 52095359 52095516 -67649382 - L2 LINE L2 0 3313 3156 240 291 253 11 chr13 52095518 52095803 -67649095 - L2 LINE L2 -472 2842 2489 497 301 57 16 chr13 52096114 52096307 -67648591 + MIR SINE MIR 8 208 -54 530 210 133 0 chr13 52096961 52097104 -67647794 + MER117 DNA MER1_type 36 197 0 756 177 15 8 chr13 52097548 52097678 -67647220 - FRAM SINE Alu -45 131 1 227 348 43 0 chr13 52097787 52097902 -67646996 - MIR SINE MIR -80 182 63 283 278 289 0 chr13 52099008 52099181 -67645717 + MIR SINE MIR 40 262 0 504 214 22 72 chr13 52099517 52099713 -67645185 - MIR SINE MIR -62 146 3 846 234 99 13 chr13 52100704 52100947 -67643951 + MIR SINE MIR 3 249 -13 2564 128 61 10 chr13 52102249 52102656 -67642242 - MSTA LTR MaLR 0 428 1 182 322 115 23 chr13 52102851 52102938 -67641960 - L2 LINE L2 -8 3305 3211 205 254 228 9 chr13 52105139 52105253 -67639645 + MIR SINE MIR 36 174 -88 2817 128 24 13 chr13 52105406 52105868 -67639030 + MLT1C LTR MaLR 1 467 0 286 228 81 40 chr13 52105872 52106021 -67638877 - MER103 DNA DNA -9 157 3 187 333 13 27 chr13 52106589 52106664 -67638234 - L2 LINE L2 -262 3010 2937 30 45 0 0 chr13 52106944 52106988 -67637910 + AT_rich Low_complexity Low_complexity 1 44 0 282 299 0 0 chr13 52107101 52107168 -67637730 + (CA)n Simple_repeat Simple_repeat 2 68 0 557 312 141 20 chr13 52107233 52108093 -67636805 - L1MC4a LINE L1 -397 5724 4903 255 319 37 22 chr13 52108948 52109083 -67635815 + L1MEd LINE L1 480 616 -5503 240 286 62 49 chr13 52109145 52109369 -67635529 + HAL1 LINE L1 1383 1609 -898 213 65 0 0 chr13 52109371 52109402 -67635496 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2186 102 46 0 chr13 52109418 52109703 -67635195 - AluSq SINE Alu -15 298 1 333 0 0 0 chr13 52110211 52110248 -67634650 + (TC)n Simple_repeat Simple_repeat 2 38 0 254 182 0 0 chr13 52110248 52110314 -67634584 - L1MC4 LINE L1 -1341 6701 6636 * 320 202 0 43 chr13 52110260 52110354 -67634544 + L1MC4 LINE L1 6614 6703 -1339 505 244 87 35 chr13 52110776 52111005 -67633893 + MLT1L LTR MaLR 370 610 -5 270 306 106 4 chr13 52111147 52111422 -67633476 + L1MEd LINE L1 2204 2506 -3623 695 284 99 34 chr13 52111426 52112402 -67632496 + L1M4 LINE L1 4349 5388 -758 196 306 35 12 chr13 52112603 52112688 -67632210 + L2 LINE L2 3186 3272 0 189 339 96 71 chr13 52112710 52112949 -67631949 + L2 LINE L2 3021 3265 -7 207 0 0 0 chr13 52114649 52114672 -67630226 + (TA)n Simple_repeat Simple_repeat 1 23 0 198 0 0 0 chr13 52114672 52114694 -67630204 + (TG)n Simple_repeat Simple_repeat 2 23 0 466 355 94 41 chr13 52115979 52117074 -67627824 - L2 LINE L2 0 3272 2026 214 211 0 0 chr13 52117122 52117160 -67627738 + L2 LINE L2 2323 2360 -954 245 295 38 19 chr13 52117437 52117542 -67627356 + L2 LINE L2 2697 2803 -511 31064 23 0 0 chr13 52118408 52123045 -67621853 - L1PA2 LINE L1 -1 6154 1517 191 255 0 0 chr13 52123833 52123880 -67621018 - MIR SINE MIR -1 261 215 406 272 88 7 chr13 52123976 52124123 -67620775 - MER63A DNA MER1_type -1 209 51 1335 259 124 19 chr13 52124156 52124638 -67620260 - MLT2E LTR ERVL -95 533 1 187 364 185 0 chr13 52124640 52124791 -67620107 - MIR SINE MIR -82 180 2 181 385 36 12 chr13 52125008 52125091 -67619807 - L2 LINE L2 -61 3211 3127 769 177 0 8 chr13 52125122 52125252 -67619646 - FLAM_C SINE Alu -4 129 1 421 279 49 16 chr13 52127726 52127848 -67617050 - L2 LINE L2 -1 3271 3146 342 341 103 1 chr13 52127844 52128004 -67616894 - MIR3 SINE MIR -14 194 18 * 222 204 0 0 chr13 52128025 52128069 -67616829 - L2 LINE L2 0 3313 3270 27 29 0 0 chr13 52128585 52128619 -67616279 + AT_rich Low_complexity Low_complexity 1 34 0 658 245 90 138 chr13 52128869 52129448 -67615450 - MLT1G3 LTR MaLR -42 553 3 4218 121 16 14 chr13 52129688 52130383 -67614515 - MER50 LTR ERV1 -37 697 2 2589 133 84 80 chr13 52130452 52130965 -67613933 + MLT2B2 LTR ERVL 1 515 0 21 57 0 0 chr13 52131445 52131480 -67613418 + AT_rich Low_complexity Low_complexity 1 35 0 719 301 46 27 chr13 52131483 52131965 -67612933 - L1ME4a LINE L1 -1 6120 5630 2181 130 20 66 chr13 52132333 52132742 -67612156 - MLT1B LTR MaLR 0 390 1 2254 232 24 27 chr13 52133020 52133697 -67611201 + L1ME2 LINE L1 5488 6162 -2 770 284 126 31 chr13 52133971 52134359 -67610539 - L2 LINE L2 -31 3282 2858 435 292 55 32 chr13 52134852 52135050 -67609848 - MIR SINE MIR -49 213 1 74 12 0 0 chr13 52137804 52137885 -67607013 + AT_rich Low_complexity Low_complexity 1 81 0 1784 235 94 31 chr13 52137915 52138138 -67606760 - L1ME3A LINE L1 -6 6164 5957 1760 165 3 21 chr13 52138138 52138429 -67606469 + AluJb SINE Alu 1 286 -26 452 16 0 32 chr13 52138432 52138494 -67606404 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 1784 235 94 31 chr13 52138494 52138943 -67605955 - L1ME3A LINE L1 -214 5956 5445 367 335 77 14 chr13 52139692 52139913 -67604985 - MLT1L LTR MaLR -129 486 252 916 227 203 10 chr13 52140022 52140313 -67604585 - MLT1F LTR MaLR -60 482 136 1254 182 121 67 chr13 52140318 52140664 -67604234 + MLT1A1 LTR MaLR 1 365 0 273 146 0 0 chr13 52140684 52140732 -67604166 - MLT1F LTR MaLR -518 49 2 2257 121 25 25 chr13 52141530 52141894 -67603004 - THE1B LTR MaLR 0 364 1 11417 93 14 21 chr13 52141894 52143484 -67601414 - THE1B-int LTR MaLR 0 1580 1 2108 132 48 25 chr13 52143484 52143840 -67601058 - THE1B LTR MaLR 0 364 1 629 287 89 40 chr13 52143895 52144073 -67600825 + L1ME4a LINE L1 5318 5486 -635 2383 93 0 0 chr13 52144073 52144374 -67600524 + AluY SINE Alu 1 301 -10 629 287 89 40 chr13 52144374 52144851 -67600047 + L1ME4a LINE L1 5486 6008 -113 339 96 0 0 chr13 52145026 52145078 -67599820 + (TG)n Simple_repeat Simple_repeat 1 52 0 469 192 128 32 chr13 52145397 52145522 -67599376 - MIR SINE MIR -2 260 124 231 250 111 0 chr13 52147107 52147215 -67597683 - L1ME4a LINE L1 0 6121 6002 411 306 201 10 chr13 52147347 52147556 -67597342 + MIR SINE MIR 12 260 -2 414 0 0 0 chr13 52147654 52147700 -67597198 + (CA)n Simple_repeat Simple_repeat 1 46 0 * 450 0 0 0 chr13 52147699 52147749 -67597149 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1824 172 0 22 chr13 52148514 52148828 -67596070 + AluJb SINE Alu 1 307 -5 501 245 61 74 chr13 52148850 52149312 -67595586 - L1MC5 LINE L1 -54 7907 7452 210 357 124 0 chr13 52150157 52150286 -67594612 + L2 LINE L2 2939 3083 -189 2200 106 0 17 chr13 52150560 52150861 -67594037 - AluSq SINE Alu -17 296 1 842 216 11 21 chr13 52150971 52151161 -67593737 - MIR SINE MIR -44 218 31 326 250 0 0 chr13 52152216 52152280 -67592618 + MER81 DNA DNA 15 78 -36 320 274 62 128 chr13 52152575 52153047 -67591851 - L2 LINE L2 -45 3227 2786 465 280 59 29 chr13 52153134 52153469 -67591429 + MLT1L LTR MaLR 149 584 -31 252 365 79 8 chr13 52153638 52153764 -67591134 - L2 LINE L2 0 3272 3138 1735 142 19 68 chr13 52154832 52155143 -67589755 + AluJo SINE Alu 3 298 -14 544 250 12 6 chr13 52155292 52155452 -67589446 - HAL1b LINE L1 -7 1341 1181 21 0 0 0 chr13 52155491 52155512 -67589386 + AT_rich Low_complexity Low_complexity 1 21 0 474 221 31 72 chr13 52155751 52155946 -67588952 - HAL1b LINE L1 -569 779 593 537 223 128 95 chr13 52156539 52156812 -67588086 + MER102a DNA MER1_type 48 329 -1 358 328 74 0 chr13 52156888 52157010 -67587888 - L2 LINE L2 -19 3253 3123 505 245 93 65 chr13 52157584 52157906 -67586992 - HAL1 LINE L1 -1055 1452 1122 385 251 69 44 chr13 52158055 52158258 -67586640 - MIR SINE MIR -50 212 5 246 32 0 0 chr13 52158751 52158782 -67586116 + (TG)n Simple_repeat Simple_repeat 1 31 0 289 322 268 23 chr13 52159552 52159906 -67584992 + L3 LINE CR1 1054 1494 -83 1025 298 37 16 chr13 52159970 52160346 -67584552 + L2 LINE L2 1793 2176 -1138 821 237 101 18 chr13 52160348 52160782 -67584116 + MLT1G LTR MaLR 1 590 0 944 291 124 42 chr13 52160783 52161257 -67583641 + L2 LINE L2 2175 2687 -627 1193 230 139 91 chr13 52161257 52161774 -67583124 - MLT1E LTR MaLR 0 542 1 560 316 50 31 chr13 52161779 52162255 -67582643 + L2 LINE L2 2686 3169 -144 655 248 218 5 chr13 52162471 52162673 -67582225 - MIR SINE MIR 0 262 18 236 120 20 0 chr13 52163956 52164006 -67580892 + GA-rich Low_complexity Low_complexity 1 51 0 2282 98 0 0 chr13 52164726 52165021 -67579877 + AluSx SINE Alu 1 295 -17 1277 261 67 8 chr13 52165273 52165664 -67579234 - MLT1C LTR MaLR 0 467 54 196 329 40 26 chr13 52166449 52166525 -67578373 - L3b LINE CR1 -87 1496 1420 331 364 30 20 chr13 52167160 52167358 -67577540 + L2 LINE L2 2830 3029 -243 1736 221 6 14 chr13 52167704 52168066 -67576832 + L1PB4 LINE L1 5797 6155 -1 213 39 0 0 chr13 52168534 52168560 -67576338 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 2265 104 3 3 chr13 52170135 52170442 -67574456 + AluSq SINE Alu 3 309 -4 1692 114 9 0 chr13 52170837 52171064 -67573834 + MER30 DNA MER1_type 2 230 0 27 29 0 0 chr13 52171440 52171474 -67573424 + AT_rich Low_complexity Low_complexity 1 34 0 334 255 104 19 chr13 52171666 52171772 -67573126 - L2 LINE L2 -5 3267 3153 2168 112 0 13 chr13 52173214 52173519 -67571379 - AluSx SINE Alu -11 301 1 1905 112 11 0 chr13 52175596 52175856 -67569042 + AluSx SINE Alu 49 311 -1 471 208 14 111 chr13 52175879 52175917 -67568981 - LTR41 LTR ERVL -6 767 727 2289 129 23 12 chr13 52175917 52176259 -67568639 + MER7A DNA MER2_type 2 345 -1 471 208 14 111 chr13 52176259 52176427 -67568471 - LTR41 LTR ERVL -46 727 581 689 209 58 17 chr13 52176659 52176831 -67568067 - LTR41 LTR ERVL -594 179 1 642 183 19 0 chr13 52177440 52177544 -67567354 - FLAM_A SINE Alu -23 119 14 256 294 79 40 chr13 52178041 52178167 -67566731 - L2 LINE L2 -1 3271 3141 985 170 0 12 chr13 52178830 52178995 -67565903 + AluJb SINE Alu 137 299 -13 394 266 84 37 chr13 52179035 52179249 -67565649 + MARNA DNA Mariner 21 244 -342 2801 169 24 2 chr13 52179851 52180308 -67564590 - MLT1C LTR MaLR 0 467 1 439 214 11 0 chr13 52180746 52180835 -67564063 - MLT1I LTR MaLR 0 409 320 360 265 111 39 chr13 52181013 52181194 -67563704 - L2 LINE L2 -16 3297 3104 837 259 172 29 chr13 52181340 52181799 -67563099 - MLT1G1 LTR MaLR 0 595 20 463 310 94 92 chr13 52181880 52182425 -67562473 - MLT1G1-int LTR MaLR -70 1301 756 284 221 78 13 chr13 52183103 52183180 -67561718 - MLT1G1-int LTR MaLR -1285 86 5 835 161 13 13 chr13 52183486 52183710 -67561188 + CT-rich Low_complexity Low_complexity 1 224 0 2221 113 0 7 chr13 52184776 52185086 -67559812 - AluSc SINE Alu -1 308 1 1772 156 0 48 chr13 52185328 52185642 -67559256 - AluJb SINE Alu -5 307 9 28 29 0 0 chr13 52186711 52186746 -67558152 + AT_rich Low_complexity Low_complexity 1 35 0 2103 126 0 0 chr13 52186747 52187033 -67557865 - AluSx SINE Alu -26 286 1 2755 105 6 0 chr13 52187410 52187763 -67557135 - THE1A LTR MaLR 0 355 1 10199 95 96 1 chr13 52187763 52189206 -67555692 - THE1A-int LTR MaLR 0 1580 1 2694 91 41 0 chr13 52189206 52189547 -67555351 - THE1A LTR MaLR 0 355 1 24 0 0 0 chr13 52191134 52191158 -67553740 + AT_rich Low_complexity Low_complexity 1 24 0 262 275 99 0 chr13 52191161 52191252 -67553646 - MARNA DNA Mariner -64 522 423 283 369 60 24 chr13 52191524 52191692 -67553206 - MER5A DNA MER1_type -6 183 10 455 277 185 11 chr13 52191819 52192003 -67552895 + MIR SINE MIR 42 257 -5 200 277 43 0 chr13 52192929 52193023 -67551875 + (TA)n Simple_repeat Simple_repeat 2 99 0 285 75 0 0 chr13 52194186 52194226 -67550672 + (TG)n Simple_repeat Simple_repeat 1 40 0 * 311 0 26 0 chr13 52194225 52194264 -67550634 + (GA)n Simple_repeat Simple_repeat 1 40 0 302 283 0 11 chr13 52194281 52194373 -67550525 + (TG)n Simple_repeat Simple_repeat 2 92 0 253 390 150 4 chr13 52195108 52195354 -67549544 - L2 LINE L2 -4 3268 2987 2131 103 3 45 chr13 52197480 52197790 -67547108 - AluSq SINE Alu -16 297 1 2130 117 3 0 chr13 52197801 52198099 -67546799 - AluSx SINE Alu -11 301 3 551 338 61 20 chr13 52198172 52198468 -67546430 + L2 LINE L2 2165 2472 -842 430 341 92 63 chr13 52198451 52198735 -67546163 + L2 LINE L2 2981 3272 0 * 252 200 0 0 chr13 52199849 52199904 -67544994 + (TG)n Simple_repeat Simple_repeat 2 56 0 458 85 0 0 chr13 52199932 52199991 -67544907 - LTR12 LTR ERV1 0 714 656 271 211 0 0 chr13 52199993 52200045 -67544853 + LTR30 LTR ERV1 1 52 -670 1102 78 131 89 chr13 52200045 52200236 -67544662 + LTR12 LTR ERV1 53 251 -463 394 246 41 0 chr13 52200236 52200358 -67544540 + LTR30 LTR ERV1 517 643 -79 1430 119 10 0 chr13 52200358 52200560 -67544338 + LTR12 LTR ERV1 377 580 -134 2311 115 0 3 chr13 52200620 52200932 -67543966 + AluSx SINE Alu 1 311 -1 1266 236 98 9 chr13 52200983 52201318 -67543580 - MLT1A1 LTR MaLR 0 365 1 421 320 19 6 chr13 52201349 52201505 -67543393 + LTR16A1 LTR ERVL 1 158 -299 538 288 149 45 chr13 52202347 52202486 -67542412 + L1MEc LINE L1 975 1098 -5298 332 71 18 0 chr13 52202486 52202542 -67542356 + (CAA)n Simple_repeat Simple_repeat 2 58 0 538 288 149 45 chr13 52202542 52203165 -67541733 + L1MEc LINE L1 1098 1817 -4579 1090 258 99 59 chr13 52203319 52204297 -67540601 + L1MEc LINE L1 2028 2999 -3216 24 0 0 0 chr13 52204524 52204548 -67540350 + AT_rich Low_complexity Low_complexity 1 24 0 1799 129 0 15 chr13 52204628 52204899 -67539999 - AluSx SINE Alu -18 294 28 1548 101 0 10 chr13 52206645 52206876 -67538022 + AluSc SINE Alu 82 310 0 296 347 14 61 chr13 52206876 52207015 -67537883 + MIR3 SINE MIR 20 154 -54 500 213 83 30 chr13 52207658 52207894 -67537004 + MLT1H LTR MaLR 301 549 0 311 292 149 10 chr13 52208518 52208713 -67536185 + L1ME LINE L1 98 319 -6077 1177 30 0 0 chr13 52208796 52208930 -67535968 - AluY SINE Alu -19 292 159 244 57 0 0 chr13 52208930 52208965 -67535933 + Alu SINE Alu 107 141 -160 2238 129 32 45 chr13 52209149 52209529 -67535369 - THE1C LTR MaLR 0 375 1 3936 250 50 31 chr13 52209769 52211423 -67533475 + L1ME LINE L1 3742 5426 -789 3072 203 33 37 chr13 52211416 52212302 -67532596 + L1ME2 LINE L1 5262 6143 -21 * 439 264 90 30 chr13 52212518 52212719 -67532179 - MIR SINE MIR -49 213 1 780 262 73 13 chr13 52212986 52213192 -67531706 + L1ME LINE L1 5599 5822 -417 1018 257 157 13 chr13 52213192 52213639 -67531259 + MLT1J LTR MaLR 1 511 0 780 262 73 13 chr13 52213639 52213701 -67531197 + L1ME LINE L1 5822 5879 -360 195 129 0 0 chr13 52213796 52213827 -67531071 + (TA)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chr13 52213879 52213909 -67530989 + AT_rich Low_complexity Low_complexity 1 30 0 576 313 69 26 chr13 52214383 52214616 -67530282 - MIR SINE MIR -14 248 6 198 390 70 0 chr13 52214893 52214993 -67529905 - L2 LINE L2 -199 3114 3008 378 241 214 9 chr13 52215039 52215151 -67529747 + MER5A DNA MER1_type 55 189 0 180 336 149 25 chr13 52215187 52215422 -67529476 - L2 LINE L2 -337 2977 2714 181 302 81 12 chr13 52215687 52215773 -67529125 + L3 LINE CR1 968 1059 -518 735 308 124 28 chr13 52217557 52218018 -67526880 - MLT1K LTR MaLR -28 560 56 21 36 0 0 chr13 52218116 52218144 -67526754 + AT_rich Low_complexity Low_complexity 1 28 0 281 291 94 26 chr13 52218356 52218473 -67526425 - L2 LINE L2 -9 3263 3139 183 319 184 35 chr13 52218554 52218695 -67526203 - MIR SINE MIR -34 228 67 26 0 0 0 chr13 52219047 52219073 -67525825 + AT_rich Low_complexity Low_complexity 1 26 0 2018 134 20 0 chr13 52219447 52219739 -67525159 - AluSx SINE Alu -14 298 1 1865 144 3 56 chr13 52220062 52220382 -67524516 - AluJo SINE Alu -9 303 1 2485 80 0 0 chr13 52220552 52220851 -67524047 - AluSg SINE Alu -11 299 1 31 0 0 0 chr13 52220962 52220993 -67523905 + AT_rich Low_complexity Low_complexity 1 31 0 372 293 124 102 chr13 52225771 52225811 -67519087 - L1M2 LINE L1 -5479 1370 1332 372 43 0 0 chr13 52225811 52225857 -67519041 + (CCG)n Simple_repeat Simple_repeat 2 47 0 372 293 124 102 chr13 52225857 52226563 -67518335 - L1M2 LINE L1 -5517 1332 607 411 203 0 0 chr13 52228100 52228179 -67516719 - MLT1A2 LTR MaLR 0 374 296 262 324 99 9 chr13 52228584 52228695 -67516203 - L3 LINE CR1 -408 1169 1049 * 1874 283 61 25 chr13 52228690 52229207 -67515691 + L2 LINE L2 2253 2824 -489 1747 259 77 16 chr13 52229207 52229763 -67515135 - MLT1G LTR MaLR 0 590 1 1874 283 61 25 chr13 52229763 52230141 -67514757 + L2 LINE L2 2824 3187 -126 250 270 96 70 chr13 52230233 52230348 -67514550 - L3 LINE CR1 -511 1066 949 980 258 12 12 chr13 52230684 52230932 -67513966 - MIR SINE MIR -10 252 5 306 98 0 0 chr13 52232502 52232553 -67512345 + (GA)n Simple_repeat Simple_repeat 1 51 0 451 209 12 22 chr13 52232894 52233044 -67511854 - MER3 DNA MER1_type 0 209 1 607 269 66 16 chr13 52233980 52234172 -67510726 - MIR SINE MIR 0 262 64 2025 146 3 3 chr13 52234189 52234483 -67510415 + AluJb SINE Alu 1 294 -18 575 265 19 0 chr13 52234493 52234655 -67510243 - L1ME3 LINE L1 -26 6136 5972 2875 154 55 98 chr13 52234657 52235422 -67509476 + L1MA9 LINE L1 5545 6276 -36 1028 245 98 0 chr13 52235441 52235788 -67509110 - L1ME3 LINE L1 -177 5985 5605 751 191 0 0 chr13 52235807 52235938 -67508960 - FLAM_A SINE Alu -2 131 1 517 290 32 0 chr13 52237059 52237214 -67507684 + MIR SINE MIR 103 262 0 2140 118 7 0 chr13 52237223 52237510 -67507388 - AluSx SINE Alu -23 289 1 341 280 121 38 chr13 52239009 52239141 -67505757 - MIR SINE MIR -87 175 33 1688 200 14 27 chr13 52241301 52241671 -67503227 + MLT1A1 LTR MaLR 1 365 0 549 309 64 14 chr13 52242159 52242379 -67502519 - MIR SINE MIR -30 232 2 535 162 12 104 chr13 52242955 52243128 -67501770 - L1MEc LINE L1 -3623 2592 2436 360 169 90 0 chr13 52243152 52243241 -67501657 - L1MB2 LINE L1 -4 6167 6071 * 385 211 36 60 chr13 52243240 52243406 -67501492 - L1MEc LINE L1 -3763 2452 2291 241 241 30 45 chr13 52243823 52243956 -67500942 - L1MEc LINE L1 -4634 1762 1632 1580 226 46 20 chr13 52243969 52244429 -67500469 - L1ME3A LINE L1 -13 6157 5686 * 2293 204 24 7 chr13 52244427 52244882 -67500016 - MLT-int LTR MaLR -17 1718 1256 352 244 0 0 chr13 52244954 52245044 -67499854 - MLT-int LTR MaLR -965 770 681 1922 206 86 12 chr13 52245153 52245711 -67499187 - MLT1B-int LTR MaLR -644 727 1 1783 182 47 21 chr13 52245711 52246091 -67498807 - MLT1B LTR MaLR 0 390 1 436 267 111 28 chr13 52246097 52246449 -67498449 - L1ME3A LINE L1 -1191 4955 4575 550 265 9 18 chr13 52246573 52246796 -67498102 - L1MEc LINE L1 -4766 1630 1410 428 298 32 55 chr13 52246860 52247078 -67497820 + MLT1F1 LTR MaLR 68 280 -275 478 215 93 14 chr13 52247182 52247389 -67497509 + MLT1F1 LTR MaLR 339 595 0 2614 56 0 0 chr13 52249067 52249373 -67495525 + AluY SINE Alu 1 306 -5 2572 89 46 0 chr13 52249567 52249915 -67494983 + THE1B LTR MaLR 1 364 0 1170 207 109 8 chr13 52250042 52250339 -67494559 + AluJb SINE Alu 4 326 0 2524 154 29 2 chr13 52251105 52251521 -67493377 + MSTA LTR MaLR 2 428 0 391 333 41 14 chr13 52252189 52252336 -67492562 - MIR3 SINE MIR -4 204 54 732 148 128 20 chr13 52252450 52252599 -67492299 + FAM SINE Alu 10 174 -11 1969 144 88 0 chr13 52252855 52253230 -67491668 - L1MB2 LINE L1 -32 6139 5732 351 325 175 10 chr13 52253536 52253736 -67491162 + MIR SINE MIR 28 260 -2 323 265 15 0 chr13 52253741 52253809 -67491089 - MIR SINE MIR -58 150 82 260 282 84 0 chr13 52254019 52254090 -67490808 - L2 LINE L2 0 3313 3237 303 28 0 0 chr13 52255034 52255070 -67489828 + (GA)n Simple_repeat Simple_repeat 2 37 0 209 129 0 0 chr13 52255799 52255830 -67489068 - MIR SINE MIR -146 116 86 331 331 99 7 chr13 52257592 52257734 -67487164 + L2 LINE L2 2312 2466 -848 397 377 109 25 chr13 52257786 52258152 -67486746 + L2 LINE L2 2911 3307 -6 247 336 57 16 chr13 52258267 52258389 -67486509 + LTR16A LTR ERVL 1 127 -323 197 194 0 0 chr13 52258679 52258715 -67486183 - L2 LINE L2 -12 3260 3225 * 307 359 31 66 chr13 52258683 52258757 -67486141 - MIR SINE MIR -10 252 177 2167 117 3 0 chr13 52258757 52259055 -67485843 - AluSx SINE Alu -13 299 1 307 359 31 66 chr13 52259055 52259236 -67485662 - MIR SINE MIR -85 177 6 305 255 59 39 chr13 52259494 52259596 -67485302 + LTR67 LTR ERVL 87 190 -367 339 121 0 0 chr13 52259781 52259839 -67485059 + (CA)n Simple_repeat Simple_repeat 2 59 0 434 298 7 43 chr13 52260843 52260876 -67484022 - L3 LINE CR1 -58 1519 1486 2546 127 101 0 chr13 52260876 52261263 -67483635 + MSTB LTR MaLR 1 426 0 434 298 7 43 chr13 52261263 52261370 -67483528 - L3 LINE CR1 -91 1486 1384 264 380 30 0 chr13 52261784 52261884 -67483014 - MIR SINE MIR -140 122 20 356 261 46 39 chr13 52262009 52262139 -67482759 + MIR SINE MIR 108 238 -24 200 267 47 100 chr13 52264422 52264572 -67480326 + MIR SINE MIR 45 186 -76 619 250 164 12 chr13 52266007 52266251 -67478647 + MIR SINE MIR 1 262 0 2571 54 0 0 chr13 52267656 52267951 -67476947 - AluY SINE Alu -16 295 1 219 339 41 33 chr13 52267963 52268084 -67476814 + L2 LINE L2 3151 3272 0 435 292 33 8 chr13 52269716 52269836 -67475062 + L2 LINE L2 3186 3308 -5 917 280 64 32 chr13 52270517 52270860 -67474038 + LTR33 LTR ERVL 23 376 -145 236 200 12 82 chr13 52271038 52271123 -67473775 + L2 LINE L2 1737 1815 -1499 2457 181 27 61 chr13 52271125 52271682 -67473216 - MLT2B3 LTR ERVL 0 554 17 431 266 18 18 chr13 52271787 52271896 -67473002 - L2 LINE L2 0 3313 3205 304 292 18 35 chr13 52272185 52272263 -67472635 + L2 LINE L2 2582 2659 -655 2481 112 22 30 chr13 52272263 52272630 -67472268 + THE1B LTR MaLR 1 364 0 304 292 18 35 chr13 52272630 52272664 -67472234 + L2 LINE L2 2659 2692 -622 28 0 0 0 chr13 52275316 52275344 -67469554 + AT_rich Low_complexity Low_complexity 1 28 0 198 103 0 0 chr13 52276291 52276320 -67468578 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 921 254 85 72 chr13 52278014 52278416 -67466482 + MLT1I LTR MaLR 3 409 0 185 423 58 13 chr13 52278575 52278731 -67466167 + L2 LINE L2 2929 3091 -181 460 248 0 0 chr13 52279474 52279579 -67465319 - L1MA10 LINE L1 0 6334 6230 449 339 28 6 chr13 52279695 52279936 -67464962 - MIR3 SINE MIR -3 259 14 296 297 211 27 chr13 52282515 52282700 -67462198 + MIR SINE MIR 32 250 -12 1965 154 10 10 chr13 52282801 52283113 -67461785 + 7SLRNA srpRNA srpRNA 5 316 -4 24 0 0 0 chr13 52283118 52283142 -67461756 + AT_rich Low_complexity Low_complexity 1 24 0 188 262 0 0 chr13 52285360 52285402 -67459496 + L3 LINE CR1 1531 1572 -5 352 276 0 0 chr13 52286328 52286404 -67458494 + MIR3 SINE MIR 87 162 -46 259 236 163 41 chr13 52286584 52286707 -67458191 + MIR SINE MIR 79 216 -46 408 285 91 21 chr13 52287041 52287227 -67457671 - MIR SINE MIR -6 256 58 374 232 219 26 chr13 52287383 52287538 -67457360 + MER5A DNA MER1_type 4 188 -1 204 350 17 0 chr13 52287538 52287594 -67457304 - L3 LINE CR1 -264 1313 1257 260 298 193 6 chr13 52289480 52289641 -67455257 + MIR SINE MIR 64 254 -8 286 342 89 6 chr13 52291249 52291407 -67453491 - MER5A DNA MER1_type -11 178 8 446 261 90 22 chr13 52291439 52291617 -67453281 + MIR SINE MIR 38 231 -31 274 131 91 30 chr13 52291666 52291765 -67453133 - Charlie5 DNA MER1_type -84 2528 2424 7123 64 14 0 chr13 52291783 52292908 -67451990 - L1PA7 LINE L1 -2 6152 5047 1732 194 0 0 chr13 52293091 52293374 -67451524 - AluJb SINE Alu -27 285 3 591 245 60 0 chr13 52396312 52396463 -67348435 + MIR SINE MIR 101 260 -2 183 291 23 81 chr13 52396484 52396570 -67348328 - MIR3 SINE MIR -116 92 12 2237 85 0 14 chr13 52396813 52397131 -67347767 - AluSx SINE Alu 0 312 1 367 354 61 18 chr13 52397267 52397547 -67347351 + L2 LINE L2 973 1264 -2050 208 329 215 7 chr13 52397630 52398178 -67346720 + L2 LINE L2 2004 2665 -649 446 173 0 0 chr13 52398435 52398510 -67346388 + MER46C DNA MER2_type 80 154 -184 192 186 23 47 chr13 52398510 52398553 -67346345 + L2 LINE L2 3226 3267 -5 2327 96 7 0 chr13 52398634 52398935 -67345963 - AluSx SINE Alu -9 303 1 1643 113 0 4 chr13 52399579 52399818 -67345080 - AluSc SINE Alu 0 309 72 801 283 20 20 chr13 52399953 52400204 -67344694 - MIR SINE MIR -10 252 2 2385 64 3 3 chr13 52401055 52401353 -67343545 - AluY SINE Alu -8 303 6 203 270 325 8 chr13 52401765 52401891 -67343007 + MIR SINE MIR 79 244 -18 2375 72 3 3 chr13 52402279 52402572 -67342326 + AluY SINE Alu 1 293 -18 2395 64 7 3 chr13 52402605 52402902 -67341996 + AluSg SINE Alu 1 298 -12 2025 64 45 19 chr13 52402905 52403170 -67341728 + AluY SINE Alu 33 304 -7 654 177 209 24 chr13 52403172 52403426 -67341472 + L1MC5 LINE L1 7616 7916 -45 1069 83 117 0 chr13 52404485 52404630 -67340268 + AluY SINE Alu 1 162 -149 1613 80 0 9 chr13 52404823 52405036 -67339862 - AluY SINE Alu -100 211 1 2435 56 0 13 chr13 52405170 52405475 -67339423 - AluY SINE Alu -10 301 1 394 96 0 0 chr13 52405846 52405898 -67339000 + MER66A LTR ERV1 287 338 -140 180 0 0 0 chr13 52405908 52405928 -67338970 + (TTAAA)n Simple_repeat Simple_repeat 1 20 0 185 359 51 0 chr13 52406029 52406107 -67338791 - L2 LINE L2 -800 2514 2433 192 97 0 0 chr13 52406232 52406263 -67338635 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1152 149 0 70 chr13 52406266 52406494 -67338404 - AluSg/x SINE Alu -16 296 85 306 119 0 0 chr13 52406494 52406536 -67338362 - AluY SINE Alu -52 249 208 920 139 21 0 chr13 52406536 52406680 -67338218 - AluSq/x SINE Alu -166 147 1 29 0 0 0 chr13 52407546 52407575 -67337323 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr13 52408324 52408352 -67336546 + AT_rich Low_complexity Low_complexity 1 28 0 434 286 145 39 chr13 52408653 52408964 -67335934 + L2 LINE L2 2929 3272 0 641 308 62 42 chr13 52409562 52409695 -67335203 + HAL1b LINE L1 61 190 -1158 2371 85 0 3 chr13 52409695 52409989 -67334909 + AluSg SINE Alu 1 293 -17 641 308 62 42 chr13 52409989 52410407 -67334491 + HAL1b LINE L1 190 623 -725 186 320 53 0 chr13 52411004 52411079 -67333819 + L2 LINE L2 3168 3246 -67 470 286 91 0 chr13 52411108 52411262 -67333636 + MIR SINE MIR 43 210 -52 250 182 78 39 chr13 52411523 52411600 -67333298 + MER91C DNA MER1_type 38 117 -23 655 221 64 85 chr13 52411869 52412058 -67332840 + L2 LINE L2 3029 3212 -101 2391 86 0 0 chr13 52412058 52412360 -67332538 - AluY SINE Alu -9 302 1 655 221 64 85 chr13 52412360 52412451 -67332447 + L2 LINE L2 3212 3303 -10 489 333 183 31 chr13 52412529 52413559 -67331339 + L2 LINE L2 1995 3180 -92 213 298 167 9 chr13 52413791 52413905 -67330993 + MIR3 SINE MIR 41 172 -36 1452 204 40 13 chr13 52414053 52414352 -67330546 - AluJo SINE Alu -5 307 1 221 175 0 0 chr13 52414709 52414749 -67330149 + L2 LINE L2 3271 3310 -3 459 164 67 39 chr13 52415444 52415548 -67329350 + AluSg SINE Alu 2 108 -202 493 202 0 11 chr13 52416059 52416148 -67328750 - FRAM SINE Alu -17 159 72 446 120 13 0 chr13 52416230 52416305 -67328593 + (TC)n Simple_repeat Simple_repeat 1 76 0 2259 102 7 3 chr13 52416305 52416609 -67328289 - AluSc SINE Alu -4 305 1 252 246 0 15 chr13 52416654 52416719 -67328179 - HAL1 LINE L1 -367 2140 2077 867 286 71 19 chr13 52417099 52417424 -67327474 - HAL1 LINE L1 -725 1782 1441 289 256 13 13 chr13 52417434 52417512 -67327386 - L2 LINE L2 -2 3270 3193 2177 116 7 0 chr13 52417625 52417926 -67326972 - AluSx SINE Alu -9 303 1 2365 83 10 0 chr13 52419336 52419636 -67325262 - AluY SINE Alu -8 303 1 2200 110 3 3 chr13 52419797 52420105 -67324793 - AluY SINE Alu -3 308 1 1288 183 7 129 chr13 52420106 52420386 -67324512 - L1MC5 LINE L1 -985 6976 6760 2467 75 0 0 chr13 52420386 52420692 -67324206 - AluSg SINE Alu -2 308 3 1288 183 7 129 chr13 52420692 52420822 -67324076 - L1MC5 LINE L1 -1201 6760 6616 201 181 14 28 chr13 52421116 52421188 -67323710 + (TA)n Simple_repeat Simple_repeat 2 72 0 1077 168 17 0 chr13 52421204 52421383 -67323515 + Tigger1 DNA MER2_type 1 182 -2236 2127 108 0 3 chr13 52421384 52421671 -67323227 - AluSc SINE Alu -23 286 1 14309 136 35 7 chr13 52421671 52423989 -67320909 - L1M1 LINE L1 -3930 3635 1252 2258 91 0 3 chr13 52424014 52424300 -67320598 - AluSg SINE Alu -21 289 5 2473 90 3 0 chr13 52424606 52424917 -67319981 - AluSp SINE Alu -1 312 1 481 248 0 39 chr13 52425410 52425539 -67319359 - MER94 DNA DNA -1 133 10 2428 69 0 10 chr13 52426237 52426540 -67318358 - AluY SINE Alu -11 300 1 2045 145 0 3 chr13 52426777 52427074 -67317824 - AluSx SINE Alu -16 296 1 2299 99 3 7 chr13 52427085 52427387 -67317511 - AluSp SINE Alu -12 301 1 1987 174 34 9 chr13 52427616 52427943 -67316955 - MER1B DNA MER1_type 0 337 3 249 271 17 0 chr13 52427953 52428012 -67316886 + MER106A DNA MER1_type 1 60 -176 399 289 69 17 chr13 52428393 52428566 -67316332 + MER106A DNA MER1_type 1 182 -54 2219 87 0 3 chr13 52428706 52428995 -67315903 + AluSg SINE Alu 1 288 -22 813 167 0 8 chr13 52429449 52429581 -67315317 + FLAM_A SINE Alu 10 140 -2 2464 82 0 0 chr13 52430787 52431090 -67313808 + AluSc SINE Alu 1 303 -6 566 323 108 35 chr13 52431454 52431881 -67313017 + L2 LINE L2 2308 2765 -549 531 309 75 41 chr13 52431996 52432291 -67312607 + L2 LINE L2 3005 3309 -4 21 57 0 0 chr13 52432362 52432397 -67312501 + AT_rich Low_complexity Low_complexity 1 35 0 213 230 60 80 chr13 52432425 52432525 -67312373 + L2 LINE L2 2307 2404 -910 1620 186 14 14 chr13 52432678 52432973 -67311925 + AluJo SINE Alu 5 299 -13 1878 154 0 0 chr13 52433614 52433893 -67311005 - AluSg SINE Alu -31 279 1 192 152 0 0 chr13 52434158 52434191 -67310707 + A-rich Low_complexity Low_complexity 3 35 0 263 284 39 65 chr13 52535734 52535889 -67209009 + MLT1J1 LTR MaLR 18 168 -278 198 233 0 23 chr13 52536801 52536844 -67208054 - MIR3 SINE MIR -23 185 144 240 280 161 0 chr13 52539769 52539887 -67205011 - MIR SINE MIR -50 212 76 586 302 149 0 chr13 52540985 52541207 -67203691 - MIR SINE MIR 0 262 8 240 211 0 0 chr13 52541238 52541314 -67203584 + GA-rich Low_complexity Low_complexity 1 76 0 3691 221 60 57 chr13 52541386 52542608 -67202290 + MER69B DNA AcHobo 2 1226 0 427 228 118 0 chr13 52544655 52544782 -67200116 + MER69 DNA AcHobo 2382 2523 -3 323 22 0 0 chr13 52547959 52548004 -67196894 - L1P LINE L1 -3046 3100 3056 4249 19 0 0 chr13 52548004 52548490 -67196408 + L1PA3 LINE L1 5666 6151 -4 2005 170 9 3 chr13 52548891 52549233 -67195665 + MER2 DNA MER2_type 1 344 0 483 63 0 0 chr13 52550440 52550503 -67194395 + (TA)n Simple_repeat Simple_repeat 2 64 0 245 130 0 0 chr13 52550503 52550549 -67194349 - LTR66 LTR ERVL -171 439 394 186 133 0 0 chr13 52550565 52550595 -67194303 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 337 303 0 0 chr13 52550598 52550687 -67194211 + L1MC4 LINE L1 6614 6702 -1340 414 220 0 0 chr13 52550700 52550800 -67194098 + (CA)n Simple_repeat Simple_repeat 2 101 0 182 336 133 0 chr13 52551554 52551682 -67193216 + MIR SINE MIR 7 151 -111 470 276 130 60 chr13 52552215 52552599 -67192299 - L2 LINE L2 -18 3295 2885 668 309 5 5 chr13 52552754 52552977 -67191921 + L2 LINE L2 2538 2760 -554 204 261 109 11 chr13 52552954 52553046 -67191852 + MIR SINE MIR 106 206 -56 * 352 211 119 0 chr13 52553270 52553379 -67191519 + MIR SINE MIR 137 258 -4 232 391 53 0 chr13 52553675 52553808 -67191090 + L2 LINE L2 2909 3048 -224 181 366 84 0 chr13 52553919 52553990 -67190908 + L2 LINE L2 3127 3203 -69 2183 118 6 10 chr13 52555921 52556234 -67188664 + AluSx SINE Alu 1 312 0 362 181 8 134 chr13 52557381 52557416 -67187482 + MLT1I LTR MaLR 46 84 -325 2598 104 6 6 chr13 52557416 52557780 -67187118 + THE1B LTR MaLR 1 364 0 362 181 8 134 chr13 52557780 52557871 -67187027 + MLT1I LTR MaLR 84 156 -253 316 273 166 33 chr13 52557879 52558052 -67186846 + MLT1J1 LTR MaLR 232 407 -2 257 103 59 0 chr13 52559211 52559279 -67185619 + (TA)n Simple_repeat Simple_repeat 2 73 0 2512 78 0 0 chr13 52559860 52560168 -67184730 - AluY SINE Alu -3 308 1 769 357 124 30 chr13 52560955 52561758 -67183140 + L2 LINE L2 2377 3278 -35 1499 159 45 39 chr13 52562946 52563279 -67181619 + MLT2C1 LTR ERVL 1 335 -62 210 156 0 0 chr13 52563280 52563325 -67181573 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 687 239 20 65 chr13 52563348 52563549 -67181349 + MIR SINE MIR 48 239 -23 705 315 137 24 chr13 52563852 52564557 -67180341 - L2 LINE L2 -5 3308 2519 1210 233 28 15 chr13 52564712 52565038 -67179860 + LTR53 LTR ERVL 190 519 0 272 224 15 0 chr13 52565279 52565346 -67179552 - tRNA-Met-i tRNA tRNA -2 73 6 616 204 90 12 chr13 52565439 52565606 -67179292 + LTR52-int LTR ERVL 790 969 -2587 4277 207 39 21 chr13 52565684 52566723 -67178175 + LTR52-int LTR ERVL 1036 2092 -3593 5473 230 20 8 chr13 52566884 52568129 -67176769 + LTR52-int LTR ERVL 2091 3350 -2335 1662 228 65 10 chr13 52568353 52568845 -67176053 + LTR53 LTR ERVL 1 519 0 399 303 79 24 chr13 52568845 52569010 -67175888 - L2 LINE L2 -791 2523 2350 284 315 151 42 chr13 52569352 52569762 -67175136 - L2 LINE L2 -541 2773 2319 971 284 73 24 chr13 52569888 52570300 -67174598 + L2 LINE L2 2828 3259 -54 644 242 195 0 chr13 52570639 52570854 -67174044 + MIR SINE MIR 5 261 -1 539 240 79 17 chr13 52570858 52571037 -67173861 + MLT1K LTR MaLR 275 490 -125 552 293 126 75 chr13 52572023 52572460 -67172438 + L2 LINE L2 2813 3271 -1 26 30 0 0 chr13 52572758 52572791 -67172107 + AT_rich Low_complexity Low_complexity 1 33 0 388 323 19 32 chr13 52574360 52574554 -67170344 + MER5B DNA MER1_type 1 153 -25 339 25 0 0 chr13 52574474 52574514 -67170384 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 192 361 28 49 chr13 52574514 52574579 -67170319 - MER5A DNA MER1_type -110 79 14 192 284 0 83 chr13 52574661 52574794 -67170104 + MIR SINE MIR 39 183 -79 528 16 0 0 chr13 52574811 52574872 -67170026 + (CA)n Simple_repeat Simple_repeat 2 62 0 2946 174 50 84 chr13 52574873 52575627 -67169271 + MER44D DNA MER2_type 2 602 -3 976 264 33 6 chr13 52577270 52577603 -67167295 - HAL1b LINE L1 -711 637 296 450 286 109 24 chr13 52577616 52577826 -67167072 - MIR SINE MIR -26 236 9 977 203 51 18 chr13 52577999 52578216 -67166682 + MER58A DNA MER1_type 1 224 0 22 0 0 0 chr13 52578750 52578772 -67166126 + AT_rich Low_complexity Low_complexity 1 22 0 248 339 8 8 chr13 52579879 52579997 -67164901 - MER117 DNA MER1_type -79 118 1 199 360 0 0 chr13 52580181 52580256 -67164642 - L2 LINE L2 0 3313 3239 25 0 0 0 chr13 52580789 52580814 -67164084 + AT_rich Low_complexity Low_complexity 1 25 0 1066 228 19 29 chr13 52580842 52581015 -67163883 + MER2 DNA MER2_type 42 212 -133 1222 186 15 0 chr13 52581015 52581278 -67163620 - L1MA4 LINE L1 -6 6294 6028 1066 228 19 29 chr13 52581278 52581411 -67163487 + MER2 DNA MER2_type 212 345 0 313 306 16 50 chr13 52583268 52583389 -67161509 - L2 LINE L2 -10 3262 3146 194 152 0 22 chr13 52584556 52584602 -67160296 + (TA)n Simple_repeat Simple_repeat 1 45 0 220 224 0 0 chr13 52585840 52585889 -67159009 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 3003 116 9 0 chr13 52586686 52587125 -67157773 - MER1A DNA MER1_type -1 528 86 580 293 61 51 chr13 52587526 52588097 -67156801 - L1MC4 LINE L1 -26 8016 7440 300 202 119 9 chr13 52588364 52588473 -67156425 + MLT1I LTR MaLR 281 401 -8 5904 190 27 16 chr13 52588505 52590672 -67154226 - L1MB1 LINE L1 0 6168 3973 864 329 42 38 chr13 52590681 52591238 -67153660 - L1M3d LINE L1 -5380 511 1 245 296 46 0 chr13 52591365 52591473 -67153425 - L1MC4 LINE L1 -742 7300 7188 371 217 38 0 chr13 52591800 52591906 -67152992 + L1ME4a LINE L1 5748 5857 -264 24 0 0 0 chr13 52592641 52592665 -67152233 + AT_rich Low_complexity Low_complexity 1 24 0 203 162 0 27 chr13 52592679 52592716 -67152182 + CT-rich Low_complexity Low_complexity 1 36 0 447 309 29 43 chr13 52593513 52593665 -67151233 - MIR SINE MIR 0 262 112 1569 191 86 3 chr13 52593665 52594001 -67150897 - MLT1A1 LTR MaLR 0 365 2 447 309 29 43 chr13 52594001 52594058 -67150840 - MIR SINE MIR -150 112 56 1783 252 18 2 chr13 52595054 52595498 -67149400 - MER74C LTR ERVL 0 460 10 1067 207 32 0 chr13 52595896 52596113 -67148785 + MER58A DNA MER1_type 1 224 0 369 343 28 28 chr13 52597878 52598021 -67146877 - L2 LINE L2 -187 3085 2943 2177 130 39 33 chr13 52598069 52598431 -67146467 - THE1B LTR MaLR 0 364 1 1869 160 3 10 chr13 52599461 52599761 -67145137 - AluJo SINE Alu -14 298 1 6603 62 2 6 chr13 52599823 52600720 -67144178 - L1PA7 LINE L1 0 6154 5261 * 9089 90 4 0 chr13 52600718 52602051 -67142847 - L1PA7 LINE L1 -1580 4566 3229 260 53 26 0 chr13 52602937 52602975 -67141923 + (TA)n Simple_repeat Simple_repeat 1 39 0 330 316 6 17 chr13 52603181 52603355 -67141543 - L1ME3A LINE L1 -231 5939 5768 317 268 121 42 chr13 52603480 52603544 -67141354 - MLT1J2 LTR MaLR -58 392 335 1971 204 56 45 chr13 52603544 52604015 -67140883 + MLT2B1 LTR ERVL 1 480 -40 801 90 15 8 chr13 52604015 52604149 -67140749 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 1971 204 56 45 chr13 52604149 52604191 -67140707 + MLT2B1 LTR ERVL 480 520 0 317 268 121 42 chr13 52604191 52604365 -67140533 - MLT1J2 LTR MaLR -115 335 135 547 259 21 0 chr13 52604692 52604835 -67140063 + HERVL40 LTR ERVL 5377 5522 -8 1457 226 63 29 chr13 52604842 52605289 -67139609 + LTR40b LTR ERVL 1 462 0 243 297 7 65 chr13 52605305 52605443 -67139455 + MIR3 SINE MIR 79 208 0 2056 149 0 0 chr13 52605638 52605947 -67138951 - AluSx SINE Alu -3 309 1 198 235 0 0 chr13 52606791 52606825 -67138073 - L2 LINE L2 -2847 467 434 914 192 13 57 chr13 52608337 52608566 -67136332 + MER20 DNA MER1_type 1 219 0 301 300 0 69 chr13 52608697 52608827 -67136071 - MIR SINE MIR -71 191 71 204 354 0 15 chr13 52609558 52609623 -67135275 + MER5B DNA MER1_type 88 151 -27 473 260 39 0 chr13 52610158 52610285 -67134613 + Charlie8 DNA MER1_type 33 164 -2253 661 285 22 0 chr13 52610376 52610555 -67134343 + MER5A DNA MER1_type 6 188 -1 23 0 0 0 chr13 52611450 52611473 -67133425 + AT_rich Low_complexity Low_complexity 1 23 0 212 299 0 46 chr13 52611709 52611796 -67133102 - MER5A DNA MER1_type -89 100 18 313 250 46 0 chr13 52612384 52612492 -67132406 - MER103 DNA DNA -37 129 17 2485 197 117 24 chr13 52613847 52614708 -67130190 + LTR28 LTR ERV1 3 1020 0 528 244 90 26 chr13 52615256 52615412 -67129486 - MIR SINE MIR -78 184 19 2053 140 0 0 chr13 52615469 52615748 -67129150 + AluSx SINE Alu 1 279 -33 198 0 0 0 chr13 52615748 52615770 -67129128 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 6463 123 40 20 chr13 52615796 52616949 -67127949 - Tigger3b DNA MER2_type -2 1229 54 310 273 98 100 chr13 52617446 52617805 -67127093 - L1M2 LINE L1 -5840 1009 652 1345 150 65 20 chr13 52618939 52619186 -67125712 - MER1B DNA MER1_type -81 258 1 283 326 76 7 chr13 52619370 52619514 -67125384 + MIR3 SINE MIR 52 205 -3 405 0 0 0 chr13 52619802 52619847 -67125051 + (CA)n Simple_repeat Simple_repeat 1 45 0 275 305 0 73 chr13 52620526 52620690 -67124208 + MLT1K LTR MaLR 437 588 0 1751 180 10 43 chr13 52621894 52622289 -67122609 + MLT2C1 LTR ERVL 16 397 0 269 350 31 0 chr13 52622625 52622722 -67122176 - MIR3 SINE MIR -24 184 85 729 274 62 11 chr13 52622754 52623111 -67121787 - L1ME4a LINE L1 -237 5884 5510 2296 120 0 9 chr13 52623147 52623463 -67121435 + AluSq SINE Alu 1 313 0 238 241 0 0 chr13 52623671 52623725 -67121173 + (TTG)n Simple_repeat Simple_repeat 3 56 0 23 0 0 0 chr13 52624195 52624218 -67120680 + AT_rich Low_complexity Low_complexity 1 23 0 220 329 29 0 chr13 52624536 52624606 -67120292 + MIR SINE MIR 188 259 -3 2000 198 22 17 chr13 52624670 52625080 -67119818 - MLT2C2 LTR ERVL -52 412 1 242 235 37 37 chr13 52627832 52627913 -67116985 - LTR16C LTR ERVL -102 389 309 859 340 42 15 chr13 52628202 52628676 -67116222 - MLT1J LTR MaLR -20 491 5 1499 195 81 24 chr13 52628966 52629335 -67115563 - MLT1B LTR MaLR 0 390 1 357 319 140 22 chr13 52629338 52629548 -67115350 - MIR SINE MIR -1 261 20 340 105 0 0 chr13 52629548 52629605 -67115293 - L1PA6 LINE L1 0 6154 6098 357 319 140 22 chr13 52629605 52629623 -67115275 - MIR SINE MIR -242 20 6 95 39 0 0 chr13 52631212 52631342 -67113556 + AT_rich Low_complexity Low_complexity 1 130 0 252 203 34 0 chr13 52631489 52631548 -67113350 + CT-rich Low_complexity Low_complexity 3 63 0 34 0 0 0 chr13 52631583 52631617 -67113281 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr13 52631752 52631785 -67113113 + AT_rich Low_complexity Low_complexity 1 33 0 1916 115 0 0 chr13 52632701 52632954 -67111944 + AluSq SINE Alu 1 253 -60 649 220 107 0 chr13 52633739 52633898 -67111000 + MIR SINE MIR 1 176 -86 266 270 20 40 chr13 52633933 52634033 -67110865 + MIR SINE MIR 165 262 0 225 187 91 18 chr13 52634709 52634770 -67110128 - MIR SINE MIR -66 142 84 2160 136 0 0 chr13 52634802 52635112 -67109786 - AluY SINE Alu -1 310 1 5236 134 10 5 chr13 52635112 52635799 -67109099 - L1PA16 LINE L1 -3 6163 5483 2205 109 10 0 chr13 52635799 52636101 -67108797 - AluSq SINE Alu -8 305 1 5236 134 10 5 chr13 52636101 52636592 -67108306 - L1PA16 LINE L1 -683 5483 4996 528 16 0 0 chr13 52636960 52637021 -67107877 + (TTTTA)n Simple_repeat Simple_repeat 1 61 0 188 347 107 0 chr13 52637849 52637924 -67106974 + MIR3 SINE MIR 85 167 -41 2346 95 0 0 chr13 52638153 52638449 -67106449 + AluY SINE Alu 1 296 -15 309 243 0 0 chr13 52638451 52638521 -67106377 + Charlie8 DNA MER1_type 160 229 -2188 458 250 10 0 chr13 52639015 52639115 -67105783 - MER5A DNA MER1_type -80 109 9 2219 113 0 0 chr13 52639171 52639462 -67105436 - AluSq SINE Alu -21 292 2 313 246 187 8 chr13 52642473 52642607 -67102291 + MIR SINE MIR 49 206 -56 183 42 0 0 chr13 52643422 52643446 -67101452 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 331 270 0 0 chr13 52644000 52644074 -67100824 + MIR3 SINE MIR 105 178 -30 27 49 0 0 chr13 52644076 52644117 -67100781 + AT_rich Low_complexity Low_complexity 1 41 0 7896 12 0 0 chr13 52645874 52646843 -67098055 - L1PA2 LINE L1 -2 6153 5185 2143 29 0 0 chr13 52646843 52647109 -67097789 + L1PA2 LINE L1 4913 5181 -965 22 0 0 0 chr13 52647224 52647246 -67097652 + AT_rich Low_complexity Low_complexity 1 22 0 474 191 11 0 chr13 52647338 52647427 -67097471 + MER2 DNA MER2_type 10 99 -246 235 208 0 21 chr13 52647450 52647498 -67097400 + MER2 DNA MER2_type 285 331 -14 333 0 0 0 chr13 52647511 52647548 -67097350 + (CA)n Simple_repeat Simple_repeat 2 38 0 543 181 62 62 chr13 52648153 52648313 -67096585 + pTR5 LTR ERV1 743 902 -1536 453 224 56 7 chr13 52648318 52648461 -67096437 + pTR5 LTR ERV1 1049 1198 -1240 246 247 82 0 chr13 52648621 52648706 -67096192 + MIR SINE MIR 85 176 -86 1798 146 87 65 chr13 52649041 52649581 -67095317 + pTR5 LTR ERV1 34 277 -437 281 253 11 0 chr13 52649585 52649680 -67095218 + LTR30 LTR ERV1 548 643 -79 1470 88 83 0 chr13 52649680 52649897 -67095001 + LTR12 LTR ERV1 480 714 0 412 308 54 57 chr13 52650690 52651024 -67093874 - MLT1J LTR MaLR -39 472 140 189 315 0 67 chr13 52651420 52651509 -67093389 - L2 LINE L2 0 3313 3231 2093 96 4 0 chr13 52651627 52651937 -67092961 - AluSx SINE Alu 0 311 1 295 343 76 0 chr13 52652038 52652143 -67092755 - L2 LINE L2 -9 3304 3192 2324 88 0 16 chr13 52652380 52652686 -67092212 - AluY SINE Alu -10 301 1 278 374 10 10 chr13 52655124 52655223 -67089675 + L2 LINE L2 2659 2757 -557 275 244 195 0 chr13 52655286 52655368 -67089530 - MER5A DNA MER1_type -83 106 9 365 262 187 13 chr13 52655395 52655620 -67089278 + L2 LINE L2 2833 3096 -217 328 316 53 0 chr13 52655769 52655902 -67088996 - MIR SINE MIR -8 254 115 425 281 53 9 chr13 52657696 52657810 -67087088 - MER5B DNA MER1_type -27 151 33 1884 142 112 45 chr13 52658668 52658909 -67085989 - MSTA LTR MaLR 0 428 148 2258 119 0 0 chr13 52658909 52659211 -67085687 - AluSx SINE Alu -9 303 2 1884 142 112 45 chr13 52659211 52659370 -67085528 - MSTA LTR MaLR -280 148 1 3135 122 8 12 chr13 52659397 52659896 -67085002 + LOR1a LTR ERV1 1 497 0 4438 135 101 87 chr13 52660687 52662058 -67082840 - pTR5 LTR ERV1 -143 2295 276 22 0 0 0 chr13 52662770 52662792 -67082106 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 52663401 52663422 -67081476 + AT_rich Low_complexity Low_complexity 1 21 0 213 259 0 56 chr13 52663423 52663477 -67081421 - L2 LINE L2 -21 3251 3201 2063 197 50 36 chr13 52663757 52664254 -67080644 + MLT1D LTR MaLR 2 505 0 2146 114 0 0 chr13 52665181 52665486 -67079412 - AluSg1 SINE Alu 0 305 1 208 374 48 0 chr13 52665511 52665594 -67079304 + L2 LINE L2 3142 3228 -44 360 242 129 57 chr13 52665888 52665994 -67078904 - MER5A DNA MER1_type -22 167 49 2351 192 30 13 chr13 52665994 52666453 -67078445 + MLT1C LTR MaLR 1 467 0 360 242 129 57 chr13 52666453 52666470 -67078428 - MER5A DNA MER1_type -140 49 35 413 235 12 0 chr13 52666525 52666606 -67078292 + MIR SINE MIR 160 241 -21 1847 185 118 10 chr13 52666771 52667187 -67077711 - LOR1b LTR ERV1 0 461 1 653 256 14 72 chr13 52667486 52667709 -67077189 - MIR SINE MIR -34 228 19 217 214 0 0 chr13 52667759 52667801 -67077097 + (CA)n Simple_repeat Simple_repeat 1 42 0 581 267 204 55 chr13 52668405 52668444 -67076454 - L2 LINE L2 0 3313 3281 1833 163 14 7 chr13 52668444 52668739 -67076159 + AluJo SINE Alu 1 297 -15 581 267 204 55 chr13 52668739 52669207 -67075691 - L2 LINE L2 -32 3281 2709 353 294 61 103 chr13 52670523 52671111 -67073787 - L2 LINE L2 -43 3270 2696 1463 179 7 11 chr13 52671599 52671872 -67073026 + AluJb SINE Alu 41 312 0 2323 92 3 20 chr13 52672935 52673261 -67071637 - AluSx SINE Alu 0 312 1 2290 98 3 3 chr13 52673487 52673782 -67071116 - AluSc SINE Alu -14 295 1 392 318 143 49 chr13 52673832 52674300 -67070598 - L2 LINE L2 -11 3302 2771 2133 146 0 0 chr13 52674300 52674594 -67070304 - AluSx SINE Alu -18 294 1 392 318 143 49 chr13 52674594 52674664 -67070234 - L2 LINE L2 -542 2771 2709 231 36 0 0 chr13 52674664 52674692 -67070206 + (TA)n Simple_repeat Simple_repeat 1 28 0 2285 95 0 3 chr13 52674693 52674988 -67069910 - AluSg SINE Alu -16 294 1 296 242 107 13 chr13 52676878 52676992 -67067906 - MIR SINE MIR -63 145 20 1484 223 43 43 chr13 52677191 52677653 -67067245 + MLT1C LTR MaLR 6 467 0 208 346 99 0 chr13 52677894 52677975 -67066923 + MIR SINE MIR 34 122 -86 255 347 162 0 chr13 52678029 52678202 -67066696 + MIR SINE MIR 8 208 -54 223 266 16 47 chr13 52679391 52679455 -67065443 - MIR SINE MIR -130 78 17 553 93 43 14 chr13 52679478 52679618 -67065280 + (TCTA)n Simple_repeat Simple_repeat 1 144 0 253 78 0 39 chr13 52679957 52680008 -67064890 + (AAATG)n Simple_repeat Simple_repeat 2 50 0 816 226 17 52 chr13 52680322 52680552 -67064346 - MER58A DNA MER1_type -1 223 2 426 224 24 97 chr13 52684980 52685145 -67059753 + MER20 DNA MER1_type 1 153 -66 377 150 170 20 chr13 52685355 52685455 -67059443 - MER58 DNA MER1_type 0 2420 2306 208 139 0 0 chr13 52686153 52686189 -67058709 + (A)n Simple_repeat Simple_repeat 1 36 0 334 350 32 6 chr13 52686510 52686667 -67058231 + L1M4 LINE L1 4003 4163 -1983 2813 169 58 21 chr13 52686679 52687213 -67057685 - MLT2B3 LTR ERVL 0 554 1 451 302 59 105 chr13 52687280 52687892 -67057006 + L2 LINE L2 2155 2738 -576 760 249 79 9 chr13 52688013 52688258 -67056640 - MIR SINE MIR -4 258 1 22 0 0 0 chr13 52688378 52688400 -67056498 + AT_rich Low_complexity Low_complexity 1 22 0 386 255 12 23 chr13 52688643 52688841 -67056057 - L1M1 LINE L1 -318 5833 5661 301 255 153 0 chr13 52688908 52689006 -67055892 - L2 LINE L2 0 3313 3201 247 388 62 31 chr13 52689131 52689358 -67055540 + L2 LINE L2 2925 3158 -114 257 224 0 0 chr13 52690867 52690916 -67053982 + (CATA)n Simple_repeat Simple_repeat 3 51 0 737 262 93 42 chr13 52691109 52691380 -67053518 - MLT1J LTR MaLR -102 409 116 2387 68 0 3 chr13 52691380 52691673 -67053225 + AluY SINE Alu 1 292 -19 737 262 93 42 chr13 52691673 52691733 -67053165 - MLT1J LTR MaLR -395 116 61 715 285 96 22 chr13 52692773 52693024 -67051874 - MLT1J LTR MaLR -116 395 115 2351 75 0 3 chr13 52693024 52693317 -67051581 + AluY SINE Alu 1 292 -19 715 285 96 22 chr13 52693317 52693377 -67051521 - MLT1J LTR MaLR -396 115 61 1817 164 3 20 chr13 52694886 52695185 -67049713 + AluJo SINE Alu 1 294 -18 2358 141 53 12 chr13 52695758 52696169 -67048729 + MSTA LTR MaLR 1 428 0 314 169 0 46 chr13 52696266 52696331 -67048567 + L2 LINE L2 3251 3312 -1 338 263 0 90 chr13 52696490 52696646 -67048252 - L2 LINE L2 0 3313 3172 1302 254 123 41 chr13 52696673 52697054 -67047844 + MER21B LTR ERV1 17 365 -498 2332 95 0 16 chr13 52697054 52697371 -67047527 - AluSq SINE Alu -1 312 1 1302 254 123 41 chr13 52697371 52697653 -67047245 + MER21B LTR ERV1 365 735 -128 3055 149 14 60 chr13 52698028 52698554 -67046344 + MLT2B3 LTR ERVL 1 448 -72 617 48 29 19 chr13 52698554 52698657 -67046241 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 3055 149 14 60 chr13 52698657 52698725 -67046173 + MLT2B3 LTR ERVL 448 518 -2 22 0 0 0 chr13 52698927 52698949 -67045949 + AT_rich Low_complexity Low_complexity 1 22 0 449 303 191 8 chr13 52700573 52700814 -67044084 - L3b LINE CR1 -97 1486 1202 713 310 26 9 chr13 52702651 52702880 -67042018 - MIR SINE MIR -12 250 18 2145 135 3 10 chr13 52705803 52706115 -67038783 + AluY SINE Alu 1 310 -1 182 359 57 31 chr13 52706371 52706530 -67038368 + L2 LINE L2 2412 2574 -740 273 29 0 0 chr13 52706530 52706564 -67038334 + (TTTTC)n Simple_repeat Simple_repeat 3 36 0 2743 37 0 0 chr13 52707019 52707345 -67037553 + L1PA4 LINE L1 5827 6152 -3 849 166 0 0 chr13 52707518 52707663 -67037235 - Tigger5 DNA MER2_type -1 2322 2178 379 134 0 0 chr13 52707661 52707728 -67037170 + Tigger5 DNA MER2_type 2079 2145 -178 * 649 206 8 0 chr13 52707741 52707872 -67037026 - Tigger5 DNA MER2_type -2165 158 27 24 32 0 0 chr13 52707932 52707963 -67036935 + AT_rich Low_complexity Low_complexity 1 31 0 236 242 250 24 chr13 52708178 52708302 -67036596 + MIR SINE MIR 10 161 -101 25 0 0 0 chr13 52708339 52708364 -67036534 + AT_rich Low_complexity Low_complexity 1 25 0 218 146 0 36 chr13 52708594 52708649 -67036249 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 244 379 23 43 chr13 52708814 52709163 -67035735 - L2 LINE L2 -209 3063 2722 1666 199 17 0 chr13 52709272 52709574 -67035324 + AluJo SINE Alu 1 307 -5 241 228 18 0 chr13 52709656 52709713 -67035185 + GA-rich Low_complexity Low_complexity 1 58 0 180 0 0 0 chr13 52710320 52710340 -67034558 + (A)n Simple_repeat Simple_repeat 1 20 0 207 262 0 0 chr13 52710489 52710531 -67034367 - L2 LINE L2 -18 3295 3254 476 283 72 0 chr13 52710682 52710820 -67034078 - MIR SINE MIR -99 163 16 5472 84 3 7 chr13 52711084 52711870 -67033028 - L1PA11 LINE L1 0 6174 5392 241 302 60 12 chr13 52711902 52711986 -67032912 - MIR SINE MIR -61 147 64 252 239 90 30 chr13 52712625 52712759 -67032139 + HAL1b LINE L1 778 919 -429 1362 177 13 17 chr13 52712764 52713001 -67031897 + AluJo SINE Alu 49 284 -28 210 71 0 0 chr13 52713001 52713029 -67031869 + (TA)n Simple_repeat Simple_repeat 2 29 0 202 196 39 0 chr13 52713090 52713141 -67031757 + (TA)n Simple_repeat Simple_repeat 2 54 0 594 360 92 15 chr13 52713624 52714024 -67030874 + L2 LINE L2 2230 2660 -654 352 367 48 59 chr13 52714122 52714392 -67030506 + L2 LINE L2 3004 3270 -2 1593 252 42 113 chr13 52714482 52715525 -67029373 + L1ME LINE L1 142 1110 -5095 * 3264 272 58 45 chr13 52715509 52715945 -67028953 + L1ME LINE L1 1495 1924 -4291 1581 249 123 19 chr13 52715945 52716512 -67028386 - MLT1E2 LTR MaLR 0 626 1 3264 272 58 45 chr13 52716512 52717038 -67027860 + L1ME LINE L1 1924 2441 -3774 1393 212 3 12 chr13 52717038 52717363 -67027535 + L1MB7 LINE L1 5862 6183 -1 3264 272 58 45 chr13 52717363 52717633 -67027265 + L1ME LINE L1 2441 2706 -3509 444 0 29 43 chr13 52717633 52717702 -67027196 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 3264 272 58 45 chr13 52717702 52717716 -67027182 + L1ME LINE L1 2706 2718 -3497 2304 108 0 0 chr13 52717716 52718022 -67026876 + AluY SINE Alu 1 306 -5 3264 272 58 45 chr13 52718022 52718649 -67026249 + L1ME LINE L1 2718 3335 -2880 2231 133 0 0 chr13 52718649 52718958 -67025940 + AluSx SINE Alu 3 311 -1 3264 272 58 45 chr13 52718958 52719569 -67025329 + L1ME LINE L1 3335 3971 -2244 1523 205 158 2 chr13 52719576 52719976 -67024922 - MLT1D LTR MaLR -42 463 2 200 244 44 0 chr13 52720225 52720270 -67024628 + L3 LINE CR1 1428 1474 -103 890 230 148 26 chr13 52720306 52720658 -67024240 - L1MC4a LINE L1 -2 7806 7412 * 2359 252 91 19 chr13 52720653 52721114 -67023784 + L1ME LINE L1 3961 4387 -1828 2147 125 0 3 chr13 52721114 52721411 -67023487 + AluSx SINE Alu 1 296 -16 2359 252 91 19 chr13 52721411 52722054 -67022844 + L1ME LINE L1 4387 5251 -964 187 358 12 37 chr13 52722059 52722140 -67022758 - MIR SINE MIR -171 91 13 193 340 137 46 chr13 52722405 52722558 -67022340 + MIR3 SINE MIR 15 181 -27 2049 97 4 0 chr13 52723747 52724049 -67020849 - AluSg SINE Alu 0 316 14 1118 209 90 16 chr13 52725141 52725452 -67019446 - L1ME3A LINE L1 -219 5951 5618 223 277 0 46 chr13 52725664 52725729 -67019169 - L2 LINE L2 0 3272 3211 322 269 201 20 chr13 52725772 52725921 -67018977 - MIR3 SINE MIR 0 208 33 21 0 0 0 chr13 52728137 52728158 -67016740 + AT_rich Low_complexity Low_complexity 1 21 0 389 256 23 30 chr13 52728837 52728970 -67015928 + MER58C DNA MER1_type 80 211 -4 311 254 115 16 chr13 52730216 52730338 -67014560 + MER94 DNA DNA 1 134 0 668 207 41 0 chr13 52730404 52730549 -67014349 - MIR SINE MIR -33 229 79 236 342 72 26 chr13 52730569 52730762 -67014136 - MIR SINE MIR -14 248 47 371 337 29 49 chr13 52731621 52731867 -67013031 + MIR SINE MIR 16 256 -6 351 300 138 12 chr13 52731881 52732041 -67012857 + MIR SINE MIR 77 256 -6 21 0 0 0 chr13 52733451 52733472 -67011426 + AT_rich Low_complexity Low_complexity 1 21 0 336 301 165 0 chr13 52734128 52734261 -67010637 - MIR SINE MIR -1 261 107 243 208 14 42 chr13 52734894 52734966 -67009932 - MIR SINE MIR -1 261 192 221 284 111 0 chr13 52735036 52735117 -67009781 - MIR SINE MIR -78 184 95 31 44 0 0 chr13 52735454 52735499 -67009399 + AT_rich Low_complexity Low_complexity 1 45 0 1200 228 37 51 chr13 52735502 52735677 -67009221 - AluJo SINE Alu -20 292 121 420 37 0 0 chr13 52735677 52735731 -67009167 + (TG)n Simple_repeat Simple_repeat 1 54 0 1200 228 37 51 chr13 52735731 52735849 -67009049 - AluJo SINE Alu -191 121 3 279 282 150 23 chr13 52736082 52736302 -67008596 + L1MEd LINE L1 994 1241 -4878 1138 277 43 26 chr13 52736356 52736818 -67008080 + L1MC4a LINE L1 5602 6071 -1737 2148 119 0 10 chr13 52737347 52737659 -67007239 + AluSc SINE Alu 1 309 0 259 254 0 0 chr13 52738503 52738570 -67006328 + L1M4 LINE L1 5199 5265 -881 429 294 81 54 chr13 52740461 52740682 -67004216 - MIR SINE MIR -22 240 14 336 359 113 37 chr13 52741910 52742503 -67002395 + L2 LINE L2 2293 2930 -384 682 215 14 7 chr13 52742535 52742679 -67002219 + MER5A DNA MER1_type 45 189 0 252 386 28 88 chr13 52742680 52742931 -67001967 + L2 LINE L2 2985 3220 -52 792 295 49 16 chr13 52742939 52743183 -67001715 - MIR SINE MIR 0 262 11 1244 168 7 91 chr13 52743756 52744030 -67000868 + MLT1B LTR MaLR 66 316 -74 1713 171 51 21 chr13 52744064 52744398 -67000500 + MER2 DNA MER2_type 1 344 0 4480 126 26 10 chr13 52745529 52746246 -66998652 + L1PA15 LINE L1 5437 6165 0 257 360 122 48 chr13 52746286 52746639 -66998259 - L2 LINE L2 0 3272 2894 256 282 29 29 chr13 52746898 52747001 -66997897 + MIR SINE MIR 18 120 -88 515 301 49 11 chr13 52747001 52747184 -66997714 + MIR SINE MIR 25 214 -48 400 312 106 32 chr13 52747185 52747553 -66997345 + LTR16C LTR ERVL 1 490 -1 401 146 45 22 chr13 52748534 52748623 -66996275 + L1MC5 LINE L1 7352 7442 -519 219 333 14 0 chr13 52748739 52748811 -66996087 - MIR SINE MIR -26 236 164 931 226 114 68 chr13 52748812 52749216 -66995682 - MLT1H LTR MaLR -7 588 1 226 288 71 94 chr13 52749450 52749620 -66995278 + L2 LINE L2 3147 3312 -1 487 255 108 85 chr13 52750486 52750662 -66994236 + L1MC4a LINE L1 5589 5776 -2032 333 0 0 0 chr13 52750662 52750699 -66994199 + (TA)n Simple_repeat Simple_repeat 2 38 0 487 255 108 85 chr13 52750699 52750828 -66994070 + L1MC4a LINE L1 5776 5901 -1907 349 311 39 0 chr13 52751712 52751815 -66993083 - MER5B DNA MER1_type 0 178 72 770 249 55 76 chr13 52751827 52752157 -66992741 - MER77 LTR ERV1 -230 375 53 645 254 47 31 chr13 52752188 52752381 -66992517 + L1ME3A LINE L1 5967 6162 -8 226 282 0 29 chr13 52752648 52752736 -66992162 + GA-rich Low_complexity Low_complexity 1 85 0 600 261 85 94 chr13 52752851 52753203 -66991695 - LTR16A1 LTR ERVL -31 426 78 3016 158 34 16 chr13 52753567 52754119 -66990779 + L1MA8 LINE L1 5545 6106 -185 1928 101 0 36 chr13 52754121 52754399 -66990499 + AluY SINE Alu 1 268 -43 640 90 0 0 chr13 52754399 52754488 -66990410 + Alu SINE Alu 220 308 -4 1041 65 0 0 chr13 52754495 52754619 -66990279 + AluY SINE Alu 7 130 -181 5021 148 35 13 chr13 52754623 52755175 -66989723 + L1PB4 LINE L1 5219 5805 -351 414 0 0 0 chr13 52755175 52755221 -66989677 + (TA)n Simple_repeat Simple_repeat 2 47 0 5021 148 35 13 chr13 52755221 52755581 -66989317 + L1PB4 LINE L1 5805 6156 0 2048 154 0 0 chr13 52756266 52756565 -66988333 + AluSx SINE Alu 1 299 -13 2737 231 157 33 chr13 52757647 52758915 -66985983 - L1M3c LINE L1 -4676 2361 923 1187 204 78 7 chr13 52758915 52759185 -66985713 - L1M3c LINE L1 -6741 289 1 1893 221 10 10 chr13 52759212 52759610 -66985288 + MLT1A2-int LTR MaLR 260 657 -714 6071 202 15 7 chr13 52760285 52762376 -66982522 - L1PA15 LINE L1 -17 6148 4031 1539 230 0 3 chr13 52762409 52762761 -66982137 + L1P LINE L1 2343 2693 -3453 328 227 35 28 chr13 52762779 52762916 -66981982 + MLT1A2-int LTR MaLR 653 881 -490 1110 192 11 72 chr13 52762972 52763248 -66981650 + MLT1A2-int LTR MaLR 1476 1734 -1 952 224 144 44 chr13 52763249 52763589 -66981309 + MLT1A2 LTR MaLR 1 374 0 515 287 66 0 chr13 52764954 52765121 -66979777 + MER5B DNA MER1_type 1 178 0 384 307 136 40 chr13 52765327 52765555 -66979343 - MIR SINE MIR 0 262 13 2280 107 0 0 chr13 52765694 52766004 -66978894 - AluSg SINE Alu 0 310 1 2553 107 33 3 chr13 52766033 52766396 -66978502 + THE1C LTR MaLR 1 374 -1 1974 170 33 0 chr13 52766696 52767031 -66977867 + MER7A DNA MER2_type 1 344 -2 2165 90 0 10 chr13 52767623 52767922 -66976976 + AluY SINE Alu 1 296 -15 735 294 11 6 chr13 52770176 52770356 -66974542 - MIR3 SINE MIR -8 200 20 261 75 0 0 chr13 52771489 52771529 -66973369 + (TC)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr13 52771529 52771563 -66973335 + (TG)n Simple_repeat Simple_repeat 1 34 0 812 271 119 28 chr13 52771701 52772339 -66972559 + HsTC2a DNA Tc2 2 739 -3 314 339 41 0 chr13 52772353 52772474 -66972424 - MIR3 SINE MIR -2 206 81 2881 9 0 0 chr13 52772617 52772934 -66971964 + AluYb8 SINE Alu 1 317 -1 2156 263 31 35 chr13 52773615 52774388 -66970510 - L1ME1 LINE L1 -5 6161 5392 776 236 64 14 chr13 52774388 52774608 -66970290 + MER96B DNA MER1_type? 5 235 -182 4473 248 103 73 chr13 52774608 52775703 -66969195 - L1ME1 LINE L1 -745 5401 4340 2092 126 7 0 chr13 52775703 52775997 -66968901 + AluSq SINE Alu 1 296 -17 4473 248 103 73 chr13 52775997 52776350 -66968548 - L1ME1 LINE L1 -1806 4340 3999 1487 61 0 5 chr13 52776350 52776547 -66968351 - L1PA4 LINE L1 -3 6152 5957 4473 248 103 73 chr13 52776547 52776712 -66968186 - L1ME1 LINE L1 -2147 3999 3840 1555 162 92 94 chr13 52776712 52777168 -66967730 + MSTB2 LTR MaLR 3 457 0 4473 248 103 73 chr13 52777168 52778359 -66966539 - L1ME1 LINE L1 -2306 3840 2511 269 151 19 19 chr13 52778480 52778533 -66966365 - MLT1J1 LTR MaLR -323 123 71 211 259 0 19 chr13 52778976 52779030 -66965868 + L3 LINE CR1 1237 1289 -288 22 0 0 0 chr13 52779109 52779131 -66965767 + AT_rich Low_complexity Low_complexity 1 22 0 300 158 0 0 chr13 52779158 52779215 -66965683 + (TG)n Simple_repeat Simple_repeat 2 58 0 261 0 0 0 chr13 52786879 52786908 -66957990 + (TA)n Simple_repeat Simple_repeat 1 29 0 246 62 0 0 chr13 52787773 52787805 -66957093 + (CA)n Simple_repeat Simple_repeat 1 32 0 376 196 216 0 chr13 52788430 52788532 -66956366 - MIR SINE MIR -66 196 73 615 240 49 101 chr13 52789064 52789331 -66955567 + L3b LINE CR1 1190 1442 -141 735 222 98 10 chr13 52792191 52792394 -66952504 - MER58A DNA MER1_type -1 223 3 2483 118 3 8 chr13 52793496 52793862 -66951036 - THE1B LTR MaLR 0 364 1 281 302 48 24 chr13 52794095 52794221 -66950677 + MIR SINE MIR 63 191 -71 438 298 101 55 chr13 52794228 52794554 -66950344 - MLT1L LTR MaLR -228 387 47 234 238 60 48 chr13 52794569 52794653 -66950245 + MIR SINE MIR 166 250 -12 1109 255 164 34 chr13 52794829 52795319 -66949579 - L1ME3A LINE L1 -9 6161 5736 2340 96 0 10 chr13 52795319 52795631 -66949267 + AluSc SINE Alu 1 309 0 1109 255 164 34 chr13 52795631 52796150 -66948748 - L1ME3A LINE L1 -434 5736 5016 6008 139 14 1 chr13 52796305 52797492 -66947406 - L1PB1 LINE L1 -1 6150 4949 210 239 0 0 chr13 52797652 52797723 -66947175 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 282 143 0 0 chr13 52798485 52798534 -66946364 + (TG)n Simple_repeat Simple_repeat 2 50 0 210 248 98 68 chr13 52798942 52799075 -66945823 - MIR SINE MIR -44 218 82 281 270 35 26 chr13 52799952 52800018 -66944880 + L1ME LINE L1 5748 5817 -347 3760 63 2 8 chr13 52800018 52800522 -66944376 + L1PA8 LINE L1 5671 6171 -1 281 270 35 26 chr13 52800522 52800570 -66944328 + L1ME LINE L1 5817 5863 -301 201 328 22 89 chr13 52800916 52801096 -66943802 + MIR3 SINE MIR 20 187 -21 22 0 0 0 chr13 52801176 52801198 -66943700 + AT_rich Low_complexity Low_complexity 1 22 0 1923 153 0 25 chr13 52802056 52802376 -66942522 - AluSx SINE Alu 0 312 1 1126 21 0 0 chr13 52802448 52802591 -66942307 + L1P2 LINE L1 5289 5431 -724 324 276 70 124 chr13 52802704 52803091 -66941807 + L1MEd LINE L1 3 368 -5751 403 309 106 57 chr13 52803128 52803410 -66941488 + L1MEd LINE L1 455 750 -5369 197 197 16 0 chr13 52804734 52804795 -66940103 + GA-rich Low_complexity Low_complexity 1 62 0 481 324 51 57 chr13 52805227 52805435 -66939463 + MER102a DNA MER1_type 1 208 -1209 2502 50 0 0 chr13 52805435 52805733 -66939165 - AluY SINE Alu -13 298 1 481 324 51 57 chr13 52805733 52805820 -66939078 + MER102a DNA MER1_type 208 294 -36 193 261 20 181 chr13 52805840 52806039 -66938859 - MER5B DNA MER1_type -11 167 1 5256 89 61 6 chr13 52806527 52807310 -66937588 + LTR12 LTR ERV1 1 826 0 284 370 25 8 chr13 52807833 52807952 -66936946 - MIR SINE MIR -110 152 32 342 0 0 0 chr13 52807953 52807991 -66936907 + (TG)n Simple_repeat Simple_repeat 1 38 0 181 122 98 24 chr13 52808238 52808279 -66936619 + MIR SINE MIR 206 249 -13 23 0 0 0 chr13 52808529 52808552 -66936346 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 52809413 52809441 -66935457 + AT_rich Low_complexity Low_complexity 1 28 0 380 250 109 26 chr13 52809625 52809781 -66935117 - MIR SINE MIR -8 254 86 19278 27 2 1 chr13 52809874 52812202 -66932696 - L1PA3 LINE L1 -1289 4857 2527 7661 25 1 0 chr13 52812202 52813504 -66931394 + L1PA3 LINE L1 4854 6152 -3 185 281 47 31 chr13 52813846 52813910 -66930988 - MIR SINE MIR -4 258 194 266 284 54 0 chr13 52813916 52813990 -66930908 + MIR SINE MIR 184 261 -1 228 362 101 7 chr13 52814011 52814160 -66930738 - MIR SINE MIR -65 197 35 1555 204 0 0 chr13 52814921 52815205 -66929693 + AluJo SINE Alu 13 296 -16 205 267 17 0 chr13 52815553 52815613 -66929285 + (TTCA)n Simple_repeat Simple_repeat 3 63 0 1194 203 94 26 chr13 52817126 52817392 -66927506 - AluJb SINE Alu -18 284 1 1301 200 31 78 chr13 52817429 52817814 -66927084 + MLT2D LTR ERVL 1 367 -47 1930 231 108 17 chr13 52817918 52818438 -66926460 + MLT1F1 LTR MaLR 1 567 0 312 301 41 16 chr13 52819432 52819555 -66925343 - MER94 DNA DNA 0 134 9 304 249 31 204 chr13 52819578 52819867 -66925031 + MIR SINE MIR 3 241 -21 * 355 313 60 0 chr13 52819843 52820009 -66924889 - MIR SINE MIR -20 242 67 248 256 184 16 chr13 52820994 52821119 -66923779 + MIR SINE MIR 99 244 -18 199 275 145 58 chr13 52823413 52823551 -66921347 + L2 LINE L2 3164 3313 0 263 250 60 50 chr13 52823623 52823723 -66921175 - MIR SINE MIR 0 262 162 201 310 103 17 chr13 52823721 52823837 -66921061 + MIR SINE MIR 29 154 -108 * 2441 76 0 0 chr13 52824735 52825037 -66919861 + AluY SINE Alu 1 302 -9 1932 256 50 8 chr13 52825208 52825704 -66919194 - LTR40a LTR ERVL -2 517 1 189 0 0 0 chr13 52826165 52826186 -66918712 + (A)n Simple_repeat Simple_repeat 1 21 0 1440 138 149 68 chr13 52826868 52827237 -66917661 + MER57A LTR ERV1 5 403 0 1791 181 7 0 chr13 52827296 52827595 -66917303 - AluJb SINE Alu -11 301 1 357 268 152 49 chr13 52828549 52828713 -66916185 - MER5A DNA MER1_type 0 189 9 479 260 75 58 chr13 52828737 52829029 -66915869 - L1M4 LINE L1 -1287 4859 4563 963 247 97 22 chr13 52829031 52829620 -66915278 - L1ME LINE L1 -713 5449 4821 3488 243 66 35 chr13 52829636 52831876 -66913022 + L1ME1 LINE L1 3821 6135 -31 463 217 57 19 chr13 52831753 52831910 -66912988 + L1MA10 LINE L1 6172 6334 0 * 6450 29 1 0 chr13 52832096 52832864 -66912034 - L1PA5 LINE L1 -1748 4398 3630 7630 57 0 0 chr13 52832864 52834618 -66910280 + L1PA5 LINE L1 4396 6153 -1 191 247 156 26 chr13 52835149 52835226 -66909672 - MIR SINE MIR 0 262 176 860 282 75 34 chr13 52836958 52837436 -66907462 + Charlie7 DNA MER1_type 55 552 -2060 1212 271 139 12 chr13 52837482 52837696 -66907202 + Charlie7 DNA MER1_type 729 915 -1697 1460 179 120 7 chr13 52837696 52838004 -66906894 - MER2 DNA MER2_type 0 344 2 1212 271 139 12 chr13 52838004 52838365 -66906533 + Charlie7 DNA MER1_type 915 1377 -1235 480 235 102 32 chr13 52838493 52838521 -66906377 - MIR SINE MIR -34 228 203 2389 77 0 0 chr13 52838521 52838818 -66906080 - AluY SINE Alu -9 302 6 480 235 102 32 chr13 52838818 52838976 -66905922 - MIR SINE MIR -59 203 29 435 217 0 47 chr13 52839002 52839108 -66905790 + Charlie7 DNA MER1_type 2182 2282 -330 27 29 0 0 chr13 52839857 52839891 -66905007 + AT_rich Low_complexity Low_complexity 1 34 0 5717 103 26 20 chr13 52841987 52842814 -66902084 - L1PA13 LINE L1 0 6163 5328 2389 88 0 0 chr13 52842814 52843108 -66901790 - AluSc SINE Alu -15 294 1 5717 103 26 20 chr13 52843108 52843184 -66901714 - L1PA13 LINE L1 -835 5328 5254 1331 195 8 22 chr13 52843579 52843846 -66901052 + AluJo SINE Alu 50 312 0 186 71 0 0 chr13 52843858 52843886 -66901012 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1497 165 24 31 chr13 52844360 52844651 -66900247 - AluJb SINE Alu -20 292 4 1554 242 117 26 chr13 52844669 52845181 -66899717 - MLT1F1 LTR MaLR 0 567 1 1086 266 95 38 chr13 52845973 52846500 -66898398 - MER34B LTR ERV1 0 565 9 22 0 0 0 chr13 52846546 52846568 -66898330 + AT_rich Low_complexity Low_complexity 1 22 0 353 378 46 0 chr13 52849763 52849980 -66894918 + L2 LINE L2 2296 2522 -792 246 136 0 0 chr13 52850094 52850138 -66894760 + (TG)n Simple_repeat Simple_repeat 1 44 0 1417 148 21 4 chr13 52850139 52850376 -66894522 - MLT2C1 LTR ERVL -156 241 1 1365 282 69 22 chr13 52851763 52852292 -66892606 + MLT1F1 LTR MaLR 1 555 -12 23 54 0 0 chr13 52852625 52852662 -66892236 + AT_rich Low_complexity Low_complexity 1 37 0 540 281 157 0 chr13 52852884 52853069 -66891829 - MIR SINE MIR 0 262 49 23 0 0 0 chr13 52853400 52853423 -66891475 + AT_rich Low_complexity Low_complexity 1 23 0 201 296 200 9 chr13 52853645 52853760 -66891138 + MIR SINE MIR 82 218 -44 825 177 151 10 chr13 52854084 52854276 -66890622 + MER20 DNA MER1_type 1 219 0 1362 208 88 48 chr13 52855066 52855511 -66889387 + LTR56 LTR ERV1 4 437 0 473 169 12 0 chr13 52858685 52858768 -66886130 + AluJ/FLAM SINE Alu 1 84 -228 602 328 62 4 chr13 52858840 52859081 -66885817 - MIR SINE MIR 0 262 8 198 0 0 0 chr13 52859411 52859433 -66885465 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 322 241 9 54 chr13 52859515 52859627 -66885271 - MIR SINE MIR -96 166 60 389 290 80 45 chr13 52860045 52860245 -66884653 + MIR SINE MIR 54 260 -2 589 359 103 34 chr13 52860314 52861206 -66883692 + L2 LINE L2 2282 3272 0 24 0 0 0 chr13 52861311 52861335 -66883563 + AT_rich Low_complexity Low_complexity 1 24 0 2275 258 33 37 chr13 52861339 52862595 -66882303 - L1ME1 LINE L1 -47 6119 4875 314 217 14 0 chr13 52862617 52862686 -66882212 - L1ME1 LINE L1 -2302 3844 3775 557 158 16 31 chr13 52862712 52862839 -66882059 - AluJb SINE Alu -187 125 1 240 288 0 0 chr13 52862878 52862951 -66881947 - L1ME LINE L1 -461 5660 5588 2048 131 0 3 chr13 52863262 52863568 -66881330 - AluY SINE Alu -6 305 1 24 32 0 0 chr13 52863972 52864003 -66880895 + AT_rich Low_complexity Low_complexity 1 31 0 1293 249 94 5 chr13 52864825 52865206 -66879692 + LTR52 LTR ERVL 6 420 -1 703 335 58 4 chr13 52865473 52865715 -66879183 - MIR SINE MIR -4 258 4 29 28 0 0 chr13 52866380 52866416 -66878482 + AT_rich Low_complexity Low_complexity 1 36 0 1788 123 3 0 chr13 52867232 52867516 -66877382 + L1MA4 LINE L1 6015 6299 -1 398 125 50 12 chr13 52867604 52867764 -66877134 + (TA)n Simple_repeat Simple_repeat 1 166 0 202 372 139 0 chr13 52868000 52868086 -66876812 - L2 LINE L2 -19 3253 3156 6626 133 52 27 chr13 52868486 52869686 -66875212 - Tigger3b DNA MER2_type 0 1231 1 304 289 21 37 chr13 52869802 52869937 -66874961 + L1ME3A LINE L1 2852 2985 -3161 732 92 25 0 chr13 52869937 52870056 -66874842 + L1MA5 LINE L1 6178 6299 -1 304 289 21 37 chr13 52870056 52870107 -66874791 + L1ME3A LINE L1 2985 3035 -3111 466 310 76 35 chr13 52870371 52870974 -66873924 + L1ME3A LINE L1 3364 3991 -2155 407 312 93 34 chr13 52871064 52871301 -66873597 + MIR SINE MIR 1 251 -11 435 281 168 27 chr13 52871344 52871531 -66873367 + L1ME3A LINE L1 4067 4226 -1920 2204 100 17 3 chr13 52871531 52871830 -66873068 + AluSg SINE Alu 1 303 -7 435 281 168 27 chr13 52871830 52872048 -66872850 + L1ME3A LINE L1 4226 4529 -1617 366 314 151 6 chr13 52872068 52872393 -66872505 + L1ME3A LINE L1 4493 4864 -1282 399 276 70 27 chr13 52872504 52872689 -66872209 + L1MC/D LINE L1 5192 5384 -762 2123 82 39 0 chr13 52872693 52872973 -66871925 + AluY SINE Alu 1 291 -20 23 0 0 0 chr13 52872974 52872997 -66871901 + AT_rich Low_complexity Low_complexity 1 23 0 248 302 35 9 chr13 52873026 52873142 -66871756 + L1MC/D LINE L1 5406 5524 -2284 23 68 0 0 chr13 52873254 52873298 -66871600 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr13 52873502 52873524 -66871374 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr13 52873635 52873665 -66871233 + AT_rich Low_complexity Low_complexity 1 30 0 184 77 51 0 chr13 52875317 52875356 -66869542 + (TTATA)n Simple_repeat Simple_repeat 4 44 0 2040 114 0 0 chr13 52875360 52875633 -66869265 - AluSg SINE Alu -37 273 1 1587 173 58 28 chr13 52875698 52876062 -66868836 + THE1C LTR MaLR 1 375 0 5081 152 1 57 chr13 52876064 52876989 -66867909 + THE1C-int LTR MaLR 3 875 -705 * 10946 180 34 16 chr13 52876988 52879225 -66865673 - L1P LINE L1 -2126 4020 1744 22 80 0 0 chr13 52879734 52879784 -66865114 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr13 52880317 52880348 -66864550 + AT_rich Low_complexity Low_complexity 1 31 0 248 250 103 9 chr13 52880428 52880544 -66864354 - L1MC4 LINE L1 0 8042 7916 254 316 0 0 chr13 52880555 52880634 -66864264 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 333 225 65 35 chr13 52880662 52880832 -66864066 - L1MC4 LINE L1 -158 7884 7600 223 288 0 25 chr13 52881672 52881752 -66863146 + (CAATA)n Simple_repeat Simple_repeat 3 80 0 1814 269 81 30 chr13 52882800 52883308 -66861590 + L1ME3A LINE L1 4864 5344 -826 2439 74 0 0 chr13 52883308 52883606 -66861292 - AluSc SINE Alu -11 298 1 1814 269 81 30 chr13 52883606 52884316 -66860582 + L1ME3A LINE L1 5344 6144 -26 377 340 19 12 chr13 52885088 52885250 -66859648 + MIR3 SINE MIR 45 207 -1 22 56 0 0 chr13 52886772 52886808 -66858090 + AT_rich Low_complexity Low_complexity 1 36 0 328 272 12 41 chr13 52889165 52889334 -66855564 + L1M4 LINE L1 1300 1533 -5079 26 0 0 0 chr13 52889364 52889390 -66855508 + AT_rich Low_complexity Low_complexity 1 26 0 477 209 111 45 chr13 52889424 52889601 -66855297 - L1M LINE L1 -743 5403 5221 7741 198 46 40 chr13 52889703 52889862 -66855036 - L1 LINE L1 -2096 4232 4075 407 21 0 0 chr13 52889862 52889910 -66854988 - tRNA-Gln-CAG tRNA tRNA -27 48 1 7741 198 46 40 chr13 52889910 52893112 -66851786 - L1 LINE L1 -2253 4075 802 2197 91 14 0 chr13 52893112 52893397 -66851501 + AluSx SINE Alu 1 289 -23 7741 198 46 40 chr13 52893397 52894199 -66850699 - L1 LINE L1 -5526 802 6 964 290 41 52 chr13 52894269 52894752 -66850146 + MLT2B1 LTR ERVL 1 478 -42 183 129 0 0 chr13 52894752 52894783 -66850115 + (CCTA)n Simple_repeat Simple_repeat 1 31 0 205 308 89 48 chr13 52895884 52896030 -66848868 + L2 LINE L2 3158 3309 -4 489 239 93 58 chr13 52896030 52896174 -66848724 - LTR37A LTR ERV1 0 426 289 306 0 0 0 chr13 52896174 52896208 -66848690 + (TG)n Simple_repeat Simple_repeat 2 35 0 489 239 93 58 chr13 52896208 52896513 -66848385 - LTR37A LTR ERV1 -137 289 8 295 301 0 12 chr13 52897024 52897107 -66847791 - MIR3 SINE MIR -13 195 114 1398 181 73 16 chr13 52897599 52897914 -66846984 - L1MA3 LINE L1 -3 6302 5970 187 292 0 0 chr13 52898769 52898817 -66846081 + MER5B DNA MER1_type 50 97 -81 181 382 45 27 chr13 52900504 52900614 -66844284 - L2 LINE L2 0 3313 3202 1344 265 35 53 chr13 52900629 52900789 -66844109 + LTR16A LTR ERVL 16 177 -273 2348 139 42 40 chr13 52900789 52901214 -66843684 - MSTB LTR MaLR 0 426 1 1344 265 35 53 chr13 52901214 52901483 -66843415 + LTR16A LTR ERVL 177 437 -13 266 352 89 45 chr13 52901587 52902058 -66842840 - L2 LINE L2 -187 3085 2599 623 241 54 25 chr13 52903653 52903856 -66841042 + MIR SINE MIR 44 252 -10 268 335 43 43 chr13 52904543 52904728 -66840170 - MIR3 SINE MIR -11 197 13 195 311 0 0 chr13 52904930 52904975 -66839923 - MIR SINE MIR -135 73 29 274 288 77 17 chr13 52905048 52905178 -66839720 - MLT1J1 LTR MaLR -37 413 278 397 320 87 12 chr13 52905202 52905374 -66839524 - MLT1J2 LTR MaLR -245 205 21 2112 107 7 13 chr13 52905590 52905899 -66838999 + AluSx SINE Alu 1 307 -5 26 0 0 0 chr13 52906108 52906134 -66838764 + AT_rich Low_complexity Low_complexity 1 26 0 1495 178 44 24 chr13 52906325 52906618 -66838280 + AluJb SINE Alu 1 299 -13 21 0 0 0 chr13 52907987 52908008 -66836890 + AT_rich Low_complexity Low_complexity 1 21 0 1521 266 97 58 chr13 52908102 52908806 -66836092 + MER21B LTR ERV1 4 734 -129 341 339 47 47 chr13 52909116 52909438 -66835460 + L1ME3A LINE L1 66 387 -5732 2257 170 26 19 chr13 52910045 52910441 -66834457 + MSTB LTR MaLR 1 402 -24 2198 143 80 5 chr13 52910441 52910839 -66834059 - MSTA LTR MaLR 0 428 1 2257 170 26 19 chr13 52910839 52910860 -66834038 + MSTB LTR MaLR 402 421 -5 377 348 63 52 chr13 52910895 52911277 -66833621 + L1ME3A LINE L1 379 764 -5355 393 333 42 66 chr13 52911380 52911759 -66833139 + L1MB2 LINE L1 265 634 -5497 475 236 2 46 chr13 52912163 52912346 -66832552 + L1MB2 LINE L1 907 1078 -5053 387 109 0 0 chr13 52912347 52912411 -66832487 - MER73 LTR ERVL -580 64 1 2129 183 52 35 chr13 52912411 52912663 -66832235 + L1MB2 LINE L1 4157 4403 -1807 13630 153 19 10 chr13 52912663 52915060 -66829838 + Tigger1 DNA MER2_type 1 2418 0 2129 183 52 35 chr13 52915060 52915544 -66829354 + L1MB2 LINE L1 4403 4899 -1311 1695 153 72 28 chr13 52915561 52915920 -66828978 + THE1C LTR MaLR 1 375 0 9753 129 7 39 chr13 52915922 52917544 -66827354 + THE1C-int LTR MaLR 3 1573 -7 1481 163 72 39 chr13 52917546 52917909 -66826989 + THE1C LTR MaLR 1 375 0 1699 223 27 5 chr13 52917919 52918332 -66826566 + L1MB2 LINE L1 4919 5340 -870 1140 178 62 36 chr13 52918488 52918764 -66826134 - THE1C LTR MaLR -92 283 1 2143 193 29 2 chr13 52918768 52919219 -66825679 + L1MB2 LINE L1 5772 6234 -1 542 253 96 9 chr13 52919307 52919536 -66825362 + L1ME3A LINE L1 896 1144 -4975 350 322 42 72 chr13 52919540 52919872 -66825026 + L1ME3A LINE L1 1029 1350 -4781 480 257 101 27 chr13 52920007 52920264 -66824634 + L1ME3A LINE L1 5237 5512 -641 319 189 147 32 chr13 52920264 52920359 -66824539 + LTR37A LTR ERV1 1 106 -320 589 152 51 14 chr13 52920456 52920594 -66824304 + LTR37A LTR ERV1 282 424 -2 1150 250 151 33 chr13 52920594 52921163 -66823735 + L1ME3A LINE L1 5509 6144 -9 182 168 122 84 chr13 52922573 52922680 -66822218 + MER5C DNA MER1_type 10 120 -204 278 273 81 20 chr13 52922720 52922819 -66822079 + L2 LINE L2 3209 3313 0 226 244 96 67 chr13 52922932 52923067 -66821831 - L1ME4a LINE L1 -6 6115 5977 291 282 68 19 chr13 52923276 52923379 -66821519 - MIR SINE MIR -79 183 76 233 241 149 0 chr13 52924685 52924772 -66820126 + MIR SINE MIR 90 189 -73 1139 134 50 34 chr13 52927974 52928213 -66816685 - L1MA9 LINE L1 0 6312 6070 394 236 173 17 chr13 52928265 52928429 -66816469 + MER5A DNA MER1_type 1 177 -1 695 264 62 0 chr13 52928437 52928615 -66816283 + MER5A DNA MER1_type 1 189 0 248 253 13 0 chr13 52928802 52928881 -66816017 + (TA)n Simple_repeat Simple_repeat 2 81 0 214 306 12 24 chr13 52928914 52928999 -66815899 - MIR3 SINE MIR -43 165 82 27 49 0 0 chr13 52929259 52929300 -66815598 + AT_rich Low_complexity Low_complexity 1 41 0 1309 203 185 10 chr13 52930555 52930944 -66813954 + MSTB2 LTR MaLR 1 457 0 21 71 0 0 chr13 52932031 52932073 -66812825 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr13 52932384 52932408 -66812490 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 52933373 52933397 -66811501 + AT_rich Low_complexity Low_complexity 1 24 0 635 261 6 19 chr13 52933939 52934085 -66810813 + FRAM SINE Alu 1 146 -156 180 0 0 0 chr13 52934085 52934105 -66810793 + (TTG)n Simple_repeat Simple_repeat 2 21 0 249 324 98 0 chr13 52936875 52936977 -66807921 - MIR SINE MIR 0 262 151 965 161 0 7 chr13 52937579 52937734 -66807164 + AluSg SINE Alu 3 156 -154 254 284 74 0 chr13 52938138 52938219 -66806679 - MIR SINE MIR -114 148 62 3453 256 54 39 chr13 52938340 52939741 -66805157 + L1M4c LINE L1 1167 2171 -4516 1332 128 55 206 chr13 52939870 52940373 -66804525 - Tigger2a DNA MER2_type -25 409 1 363 246 56 28 chr13 52940439 52940618 -66804280 + L1M4c LINE L1 2435 2618 -4116 1728 168 3 13 chr13 52940968 52941266 -66803632 - AluSx SINE Alu -17 295 1 697 253 25 8 chr13 52941395 52941703 -66803195 + L1M4c LINE L1 2608 2918 -3814 26 0 0 0 chr13 52943411 52943437 -66801461 + AT_rich Low_complexity Low_complexity 1 26 0 765 209 28 0 chr13 52943508 52943690 -66801208 + MER53 DNA DNA 3 189 0 454 322 33 16 chr13 52943694 52943877 -66801021 - MIR SINE MIR -61 201 16 928 245 0 11 chr13 52944212 52944400 -66800498 - MER5A DNA MER1_type -3 186 1 2388 150 104 17 chr13 52946638 52946992 -66797906 - MER6 DNA MER2_type -13 852 444 2116 138 33 25 chr13 52946992 52947353 -66797545 - THE1B LTR MaLR 0 364 1 2388 150 104 17 chr13 52947353 52947479 -66797419 - MER6 DNA MER2_type -421 444 330 266 324 14 0 chr13 52997956 52998030 -66746868 + MIR SINE MIR 19 93 -115 202 364 173 0 chr13 52998059 52998169 -66746729 - L2 LINE L2 -3 3269 3141 214 337 66 22 chr13 52998627 52998808 -66746090 - L2 LINE L2 -676 2638 2450 1344 154 9 0 chr13 52999110 52999324 -66745574 + L1PB4 LINE L1 5940 6155 -1 246 62 0 0 chr13 53000315 53000347 -66744551 + (TG)n Simple_repeat Simple_repeat 2 33 0 2585 124 41 2 chr13 53003680 53004092 -66740806 - MSTA LTR MaLR 0 428 1 2302 96 0 34 chr13 53004811 53005134 -66739764 + AluSx SINE Alu 1 312 0 361 343 123 9 chr13 53005205 53005424 -66739474 - L3 LINE CR1 -46 1531 1288 968 228 105 46 chr13 53005446 53005770 -66739128 + MER2 DNA MER2_type 1 343 -2 493 114 53 92 chr13 53005853 53005984 -66738914 - L1MA4 LINE L1 -1 6299 6174 21 57 0 0 chr13 53007712 53007747 -66737151 + AT_rich Low_complexity Low_complexity 1 35 0 294 214 214 10 chr13 53008582 53008680 -66736218 + L2 LINE L2 3192 3309 -4 231 99 49 25 chr13 53008818 53008899 -66735999 + (TA)n Simple_repeat Simple_repeat 2 84 0 3944 181 49 24 chr13 53008903 53009803 -66735095 - L1MA9 LINE L1 0 6312 5391 348 301 151 24 chr13 53009804 53009970 -66734928 - MIR SINE MIR -64 198 12 231 353 43 9 chr13 53009989 53010105 -66734793 - 5S rRNA rRNA -1 120 1 311 265 77 17 chr13 53011901 53012018 -66732880 - MIR3 SINE MIR -31 177 54 302 259 197 20 chr13 53012035 53012182 -66732716 - MIR SINE MIR -32 230 58 406 309 113 40 chr13 53012917 53013134 -66731764 - L2 LINE L2 -2 3311 3057 1814 168 45 6 chr13 53013134 53013468 -66731430 + MER7A DNA MER2_type 1 345 -1 406 309 113 40 chr13 53013468 53013603 -66731295 - L2 LINE L2 -256 3057 2933 222 298 85 78 chr13 53013721 53013979 -66730919 - L2 LINE L2 -658 2656 2397 426 277 45 68 chr13 53015364 53015533 -66729365 + MIR SINE MIR 2 166 -96 2423 125 5 14 chr13 53015533 53015900 -66728998 - THE1B LTR MaLR 0 364 1 426 277 45 68 chr13 53015900 53015950 -66728948 + MIR SINE MIR 166 216 -46 558 274 97 21 chr13 53016051 53016237 -66728661 - MIR SINE MIR -2 260 61 22 35 0 0 chr13 53017663 53017692 -66727206 + AT_rich Low_complexity Low_complexity 1 29 0 675 283 91 50 chr13 53017829 53018387 -66726511 - MLT1G1 LTR MaLR 0 549 1 2239 94 3 7 chr13 53018429 53018727 -66726171 + AluSx SINE Alu 14 310 -2 548 313 88 9 chr13 53020395 53020622 -66724276 - MIR SINE MIR -16 246 2 2089 119 32 40 chr13 53021475 53021853 -66723045 - THE1C LTR MaLR 0 375 1 296 285 45 84 chr13 53021978 53022157 -66722741 - L2 LINE L2 -546 2768 2597 447 190 35 60 chr13 53024204 53024320 -66720578 + L2 LINE L2 3196 3308 -5 200 348 71 9 chr13 53025030 53025142 -66719756 - MIR SINE MIR -142 120 2 206 247 14 55 chr13 53029350 53029423 -66715475 - MIR SINE MIR -26 236 167 201 211 0 0 chr13 53030686 53030738 -66714160 + (TA)n Simple_repeat Simple_repeat 1 52 0 21 57 0 0 chr13 53030966 53031001 -66713897 + AT_rich Low_complexity Low_complexity 1 35 0 2260 98 0 0 chr13 53032081 53032377 -66712521 - AluSg SINE Alu -14 296 1 188 323 71 30 chr13 53033391 53033490 -66711408 - MIR3 SINE MIR -15 193 91 232 360 70 25 chr13 53034087 53034287 -66710611 + L2 LINE L2 2874 3082 -190 226 341 123 31 chr13 53034430 53034779 -66710119 - L2 LINE L2 -831 2483 2103 375 331 0 0 chr13 53034780 53034901 -66709997 + LTR33 LTR ERVL 1 121 -400 451 278 69 6 chr13 53035084 53035257 -66709641 + LTR33 LTR ERVL 333 516 -5 202 318 202 43 chr13 53035300 53035558 -66709340 - L2 LINE L2 -1285 2029 1731 314 328 30 0 chr13 53035643 53035774 -66709124 - L2 LINE L2 -663 2651 2517 348 24 0 0 chr13 53039077 53039118 -66705780 + (CCA)n Simple_repeat Simple_repeat 3 43 0 257 271 93 25 chr13 53039812 53039930 -66704968 + MER94 DNA DNA 8 133 -1 24 0 0 0 chr13 53042384 53042408 -66702490 + AT_rich Low_complexity Low_complexity 1 24 0 268 350 106 50 chr13 53042687 53043110 -66701788 + L2 LINE L2 2211 2657 -657 765 236 91 5 chr13 53043483 53043682 -66701216 - MER20 DNA MER1_type -1 218 3 22 35 0 0 chr13 53044899 53044928 -66699970 + AT_rich Low_complexity Low_complexity 1 29 0 1892 125 3 7 chr13 53045069 53045356 -66699542 - AluSx SINE Alu -26 286 1 334 200 40 60 chr13 53046598 53046698 -66698200 + MIR SINE MIR 158 255 -7 483 232 76 27 chr13 53047224 53047409 -66697489 + L1ME1 LINE L1 2000 2193 -4203 387 236 187 0 chr13 53047413 53047626 -66697272 + L1ME1 LINE L1 2230 2480 -3735 316 249 56 67 chr13 53047615 53047884 -66697014 + L1ME1 LINE L1 3199 3464 -2751 * 2035 246 47 27 chr13 53047965 53048602 -66696296 + L1ME1 LINE L1 5563 6212 -23 1208 157 14 5 chr13 53048613 53048823 -66696075 - AluSg/x SINE Alu -24 288 77 382 143 0 0 chr13 53048898 53048954 -66695944 - L1PA8A LINE L1 -7 6124 6069 1485 272 153 22 chr13 53051813 53052622 -66692276 - L1ME2 LINE L1 -5 6657 5742 243 228 0 18 chr13 53052628 53052685 -66692213 + (TA)n Simple_repeat Simple_repeat 1 56 0 514 279 42 5 chr13 53053145 53053360 -66691538 - L1ME2 LINE L1 -3189 3455 3233 858 252 71 53 chr13 53053360 53053723 -66691175 + MLT1A2 LTR MaLR 1 374 0 942 270 50 38 chr13 53053749 53054145 -66690753 - L1ME2 LINE L1 -3431 3213 2813 264 200 62 0 chr13 53054208 53054273 -66690625 + Tigger2 DNA MER2_type 1 69 -2649 * 920 133 53 7 chr13 53054263 53054414 -66690484 + Tigger2 DNA MER2_type 2273 2430 -288 394 249 88 10 chr13 53054446 53054707 -66690191 - L1ME2 LINE L1 -3925 2745 2482 493 280 32 11 chr13 53054899 53055088 -66689810 - L1ME2 LINE L1 -4581 2244 2052 1456 250 73 30 chr13 53055091 53055664 -66689234 - L1MB8 LINE L1 -13 6165 5568 4348 239 37 31 chr13 53055664 53056159 -66688739 - L1MA9 LINE L1 -42 6270 5779 195 42 0 0 chr13 53056159 53056183 -66688715 + (CA)n Simple_repeat Simple_repeat 2 25 0 4348 239 37 31 chr13 53056183 53057511 -66687387 - L1MA9 LINE L1 -533 5779 3289 243 61 0 0 chr13 53057617 53057650 -66687248 + (CAATA)n Simple_repeat Simple_repeat 3 35 0 1558 252 103 26 chr13 53057660 53058377 -66686521 + L1 LINE L1 2535 3306 -2840 253 284 90 62 chr13 53058482 53058917 -66685981 - L1ME2 LINE L1 -4834 1708 1290 283 291 97 49 chr13 53059117 53059364 -66685534 - MLT1L LTR MaLR -4 611 353 1661 251 108 37 chr13 53059395 53059968 -66684930 - MLT1E3 LTR MaLR -3 621 8 579 243 58 86 chr13 53060012 53060255 -66684643 - MER8 DNA MER2_type -1 238 3 21 0 0 0 chr13 53060666 53060687 -66684211 + AT_rich Low_complexity Low_complexity 1 21 0 2136 113 20 0 chr13 53062226 53062527 -66682371 + AluSp SINE Alu 1 307 -6 1177 77 6 12 chr13 53062658 53062826 -66682072 - L1PA10 LINE L1 0 6168 6002 258 311 58 19 chr13 53063136 53063239 -66681659 + MIR SINE MIR 14 120 -142 288 0 0 0 chr13 53063972 53064004 -66680894 + (A)n Simple_repeat Simple_repeat 1 32 0 2001 122 20 7 chr13 53065445 53065739 -66679159 + AluSx SINE Alu 1 298 -14 1602 189 113 6 chr13 53066015 53066370 -66678528 + MSTD LTR MaLR 4 396 0 184 162 54 0 chr13 53066730 53066767 -66678131 - L3b LINE CR1 -242 1341 1303 180 269 161 54 chr13 53068866 53068959 -66675939 - MIR SINE MIR -66 142 40 187 330 62 45 chr13 53069545 53069657 -66675241 + L2 LINE L2 3151 3264 -8 21 36 0 0 chr13 53069792 53069820 -66675078 + AT_rich Low_complexity Low_complexity 1 28 0 1604 174 19 32 chr13 53070396 53070712 -66674186 + AluJo SINE Alu 1 312 0 282 268 138 29 chr13 53071049 53071187 -66673711 + MIR SINE MIR 76 228 -34 330 181 0 42 chr13 53073015 53073085 -66671813 - MLT1I LTR MaLR -2 407 341 1032 257 9 0 chr13 53073085 53073303 -66671595 + MER58A DNA MER1_type 2 221 -3 1548 280 61 45 chr13 53073589 53074120 -66670778 - L2 LINE L2 -1082 2232 1686 2300 226 44 18 chr13 53074120 53074739 -66670159 - LTR27 LTR ERV1 0 636 2 1548 280 61 45 chr13 53074739 53074910 -66669988 - L2 LINE L2 -1628 1686 1519 924 301 23 4 chr13 53076260 53076618 -66668280 - L2 LINE L2 -256 3057 2695 428 298 0 8 chr13 53076632 53076756 -66668142 - FLAM_C SINE Alu -20 123 1 226 301 14 14 chr13 53076764 53076837 -66668061 - L2 LINE L2 -637 2677 2605 1963 88 38 69 chr13 53077061 53077380 -66667518 - AluSc SINE Alu 0 309 1 1605 189 16 22 chr13 53078248 53078561 -66666337 - AluJb SINE Alu 0 312 2 1320 283 103 9 chr13 53078661 53079234 -66665664 + Charlie7 DNA MER1_type 63 689 -1923 567 310 102 28 chr13 53079516 53079880 -66665018 - MLT1J1 LTR MaLR -41 405 15 1599 201 69 6 chr13 53081461 53081824 -66663074 - MLT1B LTR MaLR -3 387 2 447 266 90 43 chr13 53083057 53083245 -66661653 + L2 LINE L2 3117 3313 0 778 189 104 15 chr13 53083322 53083523 -66661375 + MER20 DNA MER1_type 1 219 0 27 62 0 0 chr13 53083737 53083785 -66661113 + AT_rich Low_complexity Low_complexity 1 48 0 1450 337 113 31 chr13 53083862 53085062 -66659836 - L2 LINE L2 -407 2907 1610 578 320 53 5 chr13 53085075 53085281 -66659617 + LTR50 LTR ERVL 5 220 -575 342 282 100 0 chr13 53085385 53085495 -66659403 + LTR50 LTR ERVL 485 605 -190 256 272 43 33 chr13 53085531 53085623 -66659275 + LTR33A LTR ERVL 411 503 -20 205 139 23 151 chr13 53085709 53085795 -66659103 - L2 LINE L2 -1923 1391 1317 24 0 0 0 chr13 53085852 53085876 -66659022 + AT_rich Low_complexity Low_complexity 1 24 0 944 218 24 10 chr13 53086096 53086302 -66658596 + MER6B DNA MER2_type 1 209 -1 980 226 69 85 chr13 53086349 53086725 -66658173 - MLT1A2 LTR MaLR -4 370 1 953 184 6 0 chr13 53086946 53087109 -66657789 - AluJb SINE Alu -12 300 137 2526 68 0 0 chr13 53087112 53087419 -66657479 - AluY SINE Alu -4 307 1 559 184 119 0 chr13 53087509 53087618 -66657280 - FLAM_A SINE Alu -11 122 1 712 248 64 5 chr13 53088148 53088350 -66656548 - MIR SINE MIR -18 244 31 21 71 0 0 chr13 53089094 53089136 -66655762 + AT_rich Low_complexity Low_complexity 1 42 0 318 224 50 93 chr13 53092234 53092395 -66652503 - MER51A LTR ERV1 -49 591 438 574 224 75 0 chr13 53092774 53092908 -66651990 - MER3 DNA MER1_type -59 150 7 907 215 37 23 chr13 53093493 53093707 -66651191 + MER20 DNA MER1_type 2 218 -1 235 301 0 0 chr13 53093734 53093807 -66651091 - MLT1K LTR MaLR -50 538 466 260 256 56 33 chr13 53093956 53094046 -66650852 - MLT1L LTR MaLR -345 270 179 264 329 21 35 chr13 53094537 53094680 -66650218 + MIR SINE MIR 122 262 0 324 343 0 57 chr13 53095309 53095449 -66649449 - MIR SINE MIR -111 151 20 1716 309 24 17 chr13 53096421 53096805 -66648093 - MLT1H1 LTR MaLR -8 547 156 3815 107 0 11 chr13 53096805 53097368 -66647530 - L1PA13 LINE L1 0 6163 5607 1716 309 24 17 chr13 53097368 53097526 -66647372 - MLT1H1 LTR MaLR -399 156 1 23 0 0 0 chr13 53100226 53100249 -66644649 + AT_rich Low_complexity Low_complexity 1 23 0 245 349 65 24 chr13 53100366 53100535 -66644363 + L1ME LINE L1 394 569 -5636 238 317 134 31 chr13 53100992 53101216 -66643682 + L1ME LINE L1 585 831 -5286 284 294 48 73 chr13 53101287 53101535 -66643363 + L1ME LINE L1 2204 2445 -3951 2555 232 158 105 chr13 53101559 53102817 -66642081 + L1ME LINE L1 2499 3689 -2546 1212 208 41 4 chr13 53102817 53103062 -66641836 + MLT2B2 LTR ERVL 1 254 -261 2555 232 158 105 chr13 53103062 53104243 -66640655 + L1ME LINE L1 3689 5346 -889 189 0 0 0 chr13 53104243 53104264 -66640634 + (GA)n Simple_repeat Simple_repeat 2 22 0 2555 232 158 105 chr13 53104264 53104458 -66640440 + L1ME LINE L1 5346 5528 -707 377 263 67 51 chr13 53104497 53104750 -66640148 + L1ME LINE L1 3671 3932 -2214 312 331 86 13 chr13 53104962 53105812 -66639086 + L1ME LINE L1 4743 5672 -498 24 0 0 0 chr13 53105905 53105929 -66638969 + AT_rich Low_complexity Low_complexity 1 24 0 304 287 24 37 chr13 53107344 53107508 -66637390 - L1M4 LINE L1 -3872 2274 2113 23 33 0 0 chr13 53107799 53107829 -66637069 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 53107962 53107991 -66636907 + AT_rich Low_complexity Low_complexity 1 29 0 5248 158 52 9 chr13 53107991 53109145 -66635753 - L1MA7 LINE L1 0 6291 5089 2041 204 41 7 chr13 53111974 53112385 -66632513 + MSTB LTR MaLR 2 426 0 28 71 0 0 chr13 53114123 53114179 -66630719 + AT_rich Low_complexity Low_complexity 1 56 0 5504 160 15 16 chr13 53114188 53115222 -66629676 + L1MA7 LINE L1 5259 6291 0 25 21 0 43 chr13 53116632 53116656 -66628242 + AT_rich Low_complexity Low_complexity 1 24 -21 8545 39 11 3 chr13 53116656 53118479 -66626419 + L1PA5 LINE L1 4325 6154 0 25 21 0 43 chr13 53118479 53118501 -66626397 + AT_rich Low_complexity Low_complexity 24 45 0 3280 115 10 4 chr13 53118781 53119285 -66625613 + L1PA11 LINE L1 5668 6174 0 264 326 70 0 chr13 53119504 53119590 -66625308 + L2 LINE L2 3177 3268 -4 1585 145 26 36 chr13 53119785 53120088 -66624810 - AluJb SINE Alu -2 310 11 258 323 169 36 chr13 53120570 53120818 -66624080 + L2 LINE L2 1852 2132 -1182 446 61 15 0 chr13 53120905 53120971 -66623927 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1769 166 11 0 chr13 53120974 53121257 -66623641 - AluSx SINE Alu -26 286 1 1572 249 75 36 chr13 53121276 53121798 -66623100 - MLT1F LTR MaLR 0 542 1 184 354 111 0 chr13 53121928 53122027 -66622871 + L2 LINE L2 2383 2492 -822 257 316 32 11 chr13 53122961 53123056 -66621842 - MIR3 SINE MIR 0 208 112 22 0 0 0 chr13 53123202 53123224 -66621674 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr13 53123683 53123735 -66621163 + AT_rich Low_complexity Low_complexity 1 52 0 261 319 132 56 chr13 53124746 53125034 -66619864 - L2 LINE L2 -968 2346 2037 189 0 0 0 chr13 53126068 53126089 -66618809 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 257 0 30 0 chr13 53126088 53126121 -66618777 + (GA)n Simple_repeat Simple_repeat 1 34 0 233 276 24 0 chr13 53128215 53128338 -66616560 + (TA)n Simple_repeat Simple_repeat 2 127 0 246 62 0 0 chr13 53129145 53129177 -66615721 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 210 205 0 0 chr13 53129178 53129217 -66615681 - L2 LINE L2 -13 3259 3221 236 345 0 12 chr13 53130747 53130831 -66614067 - L2 LINE L2 -4 3309 3227 22 43 0 21 chr13 53134995 53135013 -66609885 + AT_rich Low_complexity Low_complexity 1 18 -28 2401 154 12 44 chr13 53135013 53135494 -66609404 - L1MB1 LINE L1 -1 6167 5702 22 43 0 21 chr13 53135494 53135522 -66609376 + AT_rich Low_complexity Low_complexity 18 46 0 235 323 47 39 chr13 53135718 53135845 -66609053 + MIR SINE MIR 67 194 -68 599 278 26 26 chr13 53135856 53136047 -66608851 - MIR SINE MIR -21 241 51 248 281 112 0 chr13 53136483 53136572 -66608326 + MIR SINE MIR 164 262 0 277 286 141 30 chr13 53136877 53137139 -66607759 + HAL1 LINE L1 82 372 -2135 832 258 43 36 chr13 53137308 53137637 -66607261 + HAL1 LINE L1 2177 2507 0 279 341 0 0 chr13 53138119 53138207 -66606691 - L3 LINE CR1 -6 1571 1484 1767 127 0 4 chr13 53138448 53138715 -66606183 - L1M1 LINE L1 -524 5779 5514 386 253 133 24 chr13 53139452 53139618 -66605280 + L2 LINE L2 3001 3184 -129 3324 197 15 20 chr13 53139655 53140305 -66604593 - MER52A LTR ERV1 -35 1720 1074 235 289 13 0 chr13 53140539 53140615 -66604283 - MER52A LTR ERV1 -1678 77 1 648 302 99 23 chr13 53140795 53141351 -66603547 - L1ME4a LINE L1 -122 5999 5402 1198 158 0 36 chr13 53141563 53141810 -66603088 - L1MA9 LINE L1 0 6312 6075 423 287 98 16 chr13 53141815 53142059 -66602839 - L1ME4a LINE L1 -3651 2495 2232 24 0 0 0 chr13 53142242 53142266 -66602632 + AT_rich Low_complexity Low_complexity 1 24 0 5604 112 24 35 chr13 53142323 53142691 -66602207 - L1PB1 LINE L1 -1 6150 5779 348 24 0 0 chr13 53142691 53142732 -66602166 + (TG)n Simple_repeat Simple_repeat 2 42 0 5604 112 24 35 chr13 53142732 53143437 -66601461 - L1PB1 LINE L1 -372 5779 5090 4073 191 41 0 chr13 53143433 53143930 -66600968 + L1 LINE L1 3892 4440 -1706 * 189 0 0 0 chr13 53143930 53143951 -66600947 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 4073 191 41 0 chr13 53143951 53144310 -66600588 + L1 LINE L1 4440 4783 -1363 226 231 0 0 chr13 53144868 53144907 -66599991 + MIR SINE MIR 203 241 -21 218 305 17 0 chr13 53144874 53144933 -66599965 + L2 LINE L2 3213 3272 0 * 2276 95 0 0 chr13 53145091 53145387 -66599511 - AluSq SINE Alu -17 296 1 5585 109 57 6 chr13 53145580 53146598 -66598300 - L1PA14 LINE L1 0 6161 5099 489 194 11 0 chr13 53146654 53146747 -66598151 - AluJo SINE Alu -92 220 127 21 0 0 0 chr13 53147312 53147333 -66597565 + AT_rich Low_complexity Low_complexity 1 21 0 427 245 87 16 chr13 53148115 53148299 -66596599 + L1MC5 LINE L1 7729 7925 -36 1064 262 58 62 chr13 53148713 53149228 -66595670 + LTR40a LTR ERVL 5 517 -2 847 219 81 0 chr13 53150467 53150713 -66594185 + L1MD3 LINE L1 7730 7995 0 22 0 0 0 chr13 53150722 53150744 -66594154 + AT_rich Low_complexity Low_complexity 1 22 0 237 132 0 0 chr13 53152497 53152535 -66592363 + (A)n Simple_repeat Simple_repeat 1 38 0 27 0 0 0 chr13 53152654 53152681 -66592217 + AT_rich Low_complexity Low_complexity 1 27 0 223 331 24 48 chr13 53152933 53153057 -66591841 + MER5A DNA MER1_type 68 188 -1 349 277 135 0 chr13 53154963 53155111 -66589787 - MER46C DNA MER2_type -170 168 1 977 79 0 22 chr13 53156799 53156938 -66587960 - AluY SINE Alu -7 304 169 271 366 10 20 chr13 53157943 53158044 -66586854 + MIR SINE MIR 26 125 -83 24 53 0 0 chr13 53158820 53158858 -66586040 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 53158986 53159008 -66585890 + AT_rich Low_complexity Low_complexity 1 22 0 540 321 78 44 chr13 53159132 53159493 -66585405 + LTR67 LTR ERVL 159 531 -26 249 246 31 0 chr13 53159764 53159829 -66585069 + MLT1J2 LTR MaLR 67 133 -317 2033 156 33 0 chr13 53159834 53160168 -66584730 + L1PA15 LINE L1 5821 6165 0 1355 146 105 70 chr13 53160361 53160749 -66584149 + MER67C LTR ERV1 2 403 -246 226 176 44 54 chr13 53160859 53160964 -66583934 + MLT1J1 LTR MaLR 343 445 -5 323 78 20 0 chr13 53161008 53161059 -66583839 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 246 136 0 0 chr13 53161542 53161586 -66583312 + (GA)n Simple_repeat Simple_repeat 1 44 0 1970 158 33 25 chr13 53161786 53162147 -66582751 - THE1B LTR MaLR 0 364 1 268 222 63 0 chr13 53162338 53162401 -66582497 + MLT1J2 LTR MaLR 2 68 -382 340 321 59 16 chr13 53162536 53162723 -66582175 + MLT1J1 LTR MaLR 252 446 0 205 333 163 0 chr13 53162786 53162933 -66581965 - MIR SINE MIR -44 218 48 264 265 33 86 chr13 53164500 53164651 -66580247 - MLT1L LTR MaLR -387 228 86 304 315 105 21 chr13 53164707 53164850 -66580048 - MIR SINE MIR -102 160 6 372 260 19 19 chr13 53165129 53165233 -66579665 - MIR SINE MIR 0 262 159 545 331 72 31 chr13 53165333 53165692 -66579206 - MLT1J LTR MaLR -110 401 28 230 231 43 0 chr13 53165955 53166072 -66578826 + (TA)n Simple_repeat Simple_repeat 2 123 0 450 211 9 0 chr13 53167664 53167773 -66577125 - L1MB8 LINE L1 -1 6177 6068 2103 225 67 13 chr13 53167779 53168436 -66576462 - L1MB8 LINE L1 -181 6008 5293 1555 207 20 43 chr13 53168442 53168724 -66576174 - L1MB8 LINE L1 -1214 4932 4660 2883 3 0 0 chr13 53168724 53169035 -66575863 - AluYa5 SINE Alu 0 311 1 1555 207 20 43 chr13 53169035 53169143 -66575755 - L1MB8 LINE L1 -1486 4660 4551 1291 261 57 20 chr13 53169143 53169549 -66575349 + MLT1D LTR MaLR 1 421 -84 976 224 33 24 chr13 53169587 53169918 -66574980 - L1MB8 LINE L1 -1583 4563 4230 1157 251 48 20 chr13 53169922 53170280 -66574618 + L1MC4a LINE L1 7435 7802 -6 2347 94 0 0 chr13 53170324 53170623 -66574275 - AluSx SINE Alu -13 299 1 300 91 0 0 chr13 53170992 53171036 -66573862 + (CA)n Simple_repeat Simple_repeat 2 45 0 2236 189 11 11 chr13 53172560 53173030 -66571868 - L1MB1 LINE L1 -1 6167 5698 1213 184 5 167 chr13 53173078 53173708 -66571190 + L1M3 LINE L1 5159 5688 -495 266 343 126 8 chr13 53177091 53177399 -66567499 - L2 LINE L2 -206 3066 2716 596 97 11 0 chr13 53177403 53177496 -66567402 + (TCTA)n Simple_repeat Simple_repeat 3 96 0 617 86 0 0 chr13 53177496 53177577 -66567321 - AluSq SINE Alu -30 283 203 * 747 110 0 0 chr13 53177573 53177682 -66567216 - AluSq SINE Alu -204 109 1 400 329 85 41 chr13 53177689 53178100 -66566798 - L2 LINE L2 -606 2708 2280 1214 216 60 0 chr13 53178102 53178449 -66566449 - Looper DNA T2_type -1190 368 1 1252 261 71 55 chr13 53178483 53179078 -66565820 - L1ME1 LINE L1 -5 6161 5558 1068 217 15 120 chr13 53179089 53179191 -66565707 + MLT1A1 LTR MaLR 13 124 -241 1229 231 102 14 chr13 53179191 53179555 -66565343 - MSTD LTR MaLR 0 396 1 1068 217 15 120 chr13 53179555 53179844 -66565054 + MLT1A1 LTR MaLR 124 363 -2 791 263 75 3 chr13 53179853 53180201 -66564697 - L1ME1 LINE L1 -605 5559 5187 257 103 0 59 chr13 53180201 53180269 -66564629 + (TTCCC)n Simple_repeat Simple_repeat 5 68 0 490 219 22 17 chr13 53180403 53180581 -66564317 + CT-rich Low_complexity Low_complexity 1 179 0 1332 241 58 0 chr13 53180587 53180986 -66563912 - L1ME1 LINE L1 -966 5180 4759 930 256 0 0 chr13 53180991 53181186 -66563712 + MER58A DNA MER1_type 6 200 -24 5029 179 23 21 chr13 53181294 53181647 -66563251 - L1M2 LINE L1 -513 5787 5436 2257 140 91 5 chr13 53181647 53182041 -66562857 - MSTA LTR MaLR 0 428 1 5029 179 23 21 chr13 53182041 53183263 -66561635 - L1M2 LINE L1 -864 5436 4194 2240 152 5 12 chr13 53183266 53183680 -66561218 + L1MA5 LINE L1 5884 6294 -6 545 254 109 12 chr13 53183700 53183956 -66560942 - L1ME1 LINE L1 -1517 4629 4349 537 204 92 47 chr13 53183949 53184003 -66560895 - L1ME1 LINE L1 -2308 3838 3788 * 2243 135 28 25 chr13 53184003 53184366 -66560532 + THE1B LTR MaLR 1 364 0 11360 103 9 0 chr13 53184366 53185932 -66558966 + THE1B-int LTR MaLR 1 1580 0 2184 140 27 30 chr13 53185932 53186297 -66558601 + THE1B LTR MaLR 1 364 0 537 204 92 47 chr13 53186297 53186415 -66558483 - L1ME1 LINE L1 -2357 3789 3656 990 271 81 11 chr13 53186422 53186774 -66558124 - MLT1E2 LTR MaLR -4 622 208 366 232 56 14 chr13 53186874 53187016 -66557882 - L1M4 LINE L1 -966 5180 5033 376 202 0 0 chr13 53187016 53187093 -66557805 - MLT1E3 LTR MaLR -446 208 86 544 274 13 0 chr13 53187158 53187311 -66557587 - L1ME1 LINE L1 -2489 3657 3503 4109 267 30 16 chr13 53187336 53188900 -66555998 + L1 LINE L1 16 2287 -5278 1080 118 18 6 chr13 53188903 53189072 -66555826 - MSTA-int LTR MaLR -1407 173 3 1879 177 105 5 chr13 53189074 53189463 -66555435 - MSTA LTR MaLR 0 428 1 3388 181 20 6 chr13 53189463 53190161 -66554737 + L1 LINE L1 5511 6218 -1347 5332 247 22 17 chr13 53190175 53192237 -66552661 + L1PBa LINE L1 3 1644 -5219 3663 90 16 23 chr13 53192238 53192978 -66551920 - MER11A LTR ERVK -438 798 1 2876 179 17 13 chr13 53192978 53193580 -66551318 + L1PBb LINE L1 475 1080 -5124 332 339 109 72 chr13 53193810 53194425 -66550473 + L2 LINE L2 2261 2940 -373 2895 116 5 2 chr13 53194425 53194857 -66550041 - L1PB2 LINE L1 -10 6141 5709 332 339 109 72 chr13 53194857 53195196 -66549702 + L2 LINE L2 2940 3265 -48 2285 101 0 3 chr13 53195395 53195693 -66549205 + AluSg SINE Alu 1 297 -13 42 57 0 0 chr13 53195703 53195773 -66549125 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr13 53195786 53195807 -66549091 + AT_rich Low_complexity Low_complexity 1 21 0 284 192 27 68 chr13 53196266 53196339 -66548559 - MLT1I LTR MaLR 0 409 344 1783 220 123 57 chr13 53196343 53197117 -66547781 + LTR1B LTR ERV1 1 825 -1 338 325 98 45 chr13 53198215 53198461 -66546437 - MIR SINE MIR -1 261 3 378 0 0 0 chr13 53200028 53200070 -66544828 + (TTA)n Simple_repeat Simple_repeat 2 43 0 23 33 0 0 chr13 53200820 53200850 -66544048 + AT_rich Low_complexity Low_complexity 1 30 0 26008 55 9 2 chr13 53201585 53205741 -66539157 + L1PA5 LINE L1 1959 6149 -5 1561 225 53 30 chr13 53205729 53206293 -66538605 + L1M4 LINE L1 4472 5048 -1098 * 333 300 72 60 chr13 53207481 53207731 -66537167 + Charlie8 DNA MER1_type 1 253 -2164 253 245 32 64 chr13 53207726 53207820 -66537078 + Charlie8 DNA MER1_type 2326 2416 -1 * 1010 125 74 0 chr13 53208961 53209137 -66535761 + THE1C LTR MaLR 185 373 -2 2508 151 29 33 chr13 53209139 53209786 -66535112 - L1P4 LINE L1 -435 5731 5093 27 29 0 0 chr13 53210469 53210503 -66534395 + AT_rich Low_complexity Low_complexity 1 34 0 310 151 27 14 chr13 53210802 53210875 -66534023 + GA-rich Low_complexity Low_complexity 2 75 0 217 151 38 0 chr13 53211260 53211313 -66533585 + CT-rich Low_complexity Low_complexity 2 56 0 257 246 49 0 chr13 53212640 53212701 -66532197 + MER46C DNA MER2_type 1 64 -274 795 273 23 8 chr13 53212783 53213039 -66531859 + MER46C DNA MER2_type 79 338 0 3850 129 20 61 chr13 53213799 53214505 -66530393 - L1PA13 LINE L1 -11 6152 5476 252 51 0 0 chr13 53214505 53214544 -66530354 - AluJb SINE Alu -2 306 268 1334 118 29 13 chr13 53214544 53214814 -66530084 - L1PA13 LINE L1 -678 5490 5217 545 202 8 0 chr13 53214815 53214934 -66529964 + L1P LINE L1 4256 4375 -1771 * 2078 258 24 6 chr13 53214933 53215600 -66529298 - L1P3 LINE L1 -4247 2214 1545 277 188 0 14 chr13 53215580 53215649 -66529249 - L1 LINE L1 -1087 5059 4992 * 1690 175 3 7 chr13 53215660 53215946 -66528952 - AluJb SINE Alu -27 285 1 3408 187 5 0 chr13 53215946 53216581 -66528317 - L1PA13 LINE L1 -1130 5016 4379 260 167 0 0 chr13 53216585 53216633 -66528265 - L1PA13 LINE L1 -1879 4267 4220 * 544 261 22 0 chr13 53216629 53216767 -66528131 + L1P LINE L1 1894 2034 -4112 22 0 0 0 chr13 53217216 53217238 -66527660 + AT_rich Low_complexity Low_complexity 1 22 0 2184 149 48 26 chr13 53217348 53217765 -66527133 - MSTA LTR MaLR 0 428 3 1066 218 44 98 chr13 53217865 53218251 -66526647 + MLT1A1 LTR MaLR 1 365 0 2362 199 12 91 chr13 53218259 53218908 -66525990 + MLT1A1-int LTR MaLR 9 606 -1129 1408 192 7 38 chr13 53218908 53219223 -66525675 + AluJo SINE Alu 1 306 0 252 325 17 42 chr13 53220595 53220715 -66524183 - L2 LINE L2 -615 2699 2583 21 0 0 0 chr13 53221976 53221997 -66522901 + AT_rich Low_complexity Low_complexity 1 21 0 2258 102 0 0 chr13 53222062 53222365 -66522533 - AluSg SINE Alu -7 303 1 254 271 195 48 chr13 53222671 53222963 -66521935 - L1MC4a LINE L1 -1630 6178 5844 264 282 99 7 chr13 53222979 53223121 -66521777 - L1MC4a LINE L1 -1894 5914 5760 25 65 0 0 chr13 53223779 53223825 -66521073 + AT_rich Low_complexity Low_complexity 1 46 0 249 266 178 47 chr13 53223843 53223945 -66520953 - MIR SINE MIR 0 262 175 2037 114 3 7 chr13 53223945 53224235 -66520663 - AluSx SINE Alu -23 289 1 249 266 178 47 chr13 53224235 53224301 -66520597 - MIR SINE MIR -87 175 72 383 266 53 11 chr13 53226022 53226116 -66518782 - MER81 DNA DNA 0 114 17 25 31 0 0 chr13 53227176 53227208 -66517690 + AT_rich Low_complexity Low_complexity 1 32 0 5344 134 36 20 chr13 53227858 53228909 -66515989 - MER11B LTR ERVK -24 1047 1 252 0 0 0 chr13 53229047 53229075 -66515823 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 788 268 103 0 chr13 53229725 53229949 -66514949 + MIR SINE MIR 1 247 -15 23 0 0 0 chr13 53229976 53229999 -66514899 + AT_rich Low_complexity Low_complexity 1 23 0 266 258 15 0 chr13 53231693 53231759 -66513139 + MER94 DNA DNA 1 67 -67 423 0 0 0 chr13 53233169 53233216 -66511682 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3603 161 111 16 chr13 53237232 53237986 -66506912 + LTR1B LTR ERV1 1 826 0 2395 61 0 7 chr13 53238082 53238379 -66506519 - AluY SINE Alu -16 295 1 495 245 184 22 chr13 53238513 53238705 -66506193 + MIR SINE MIR 34 248 -14 440 339 16 16 chr13 53239727 53239910 -66504988 + MER5A DNA MER1_type 7 189 0 2081 139 11 11 chr13 53241483 53241843 -66503055 - L1PB4 LINE L1 -12 6144 5785 263 242 27 23 chr13 53241882 53241993 -66502905 - L1MCa LINE L1 -1333 6989 2007 250 238 125 0 chr13 53241935 53242015 -66502883 + L1MC4 LINE L1 6614 6703 -1339 * 649 134 27 9 chr13 53242029 53242141 -66502757 - L1PB4 LINE L1 -368 5788 5675 4967 161 24 6 chr13 53242143 53243548 -66501350 - L1PA15 LINE L1 -3 7600 6195 5756 259 36 44 chr13 53243669 53244445 -66500453 - L1PA15 LINE L1 -3080 4504 3723 894 188 0 7 chr13 53244445 53244599 -66500299 - AluSg/x SINE Alu -15 297 145 5756 259 36 44 chr13 53244599 53247955 -66496943 - L1PA15 LINE L1 -3861 3723 8 4152 186 36 25 chr13 53247975 53249252 -66495646 - L1P5 LINE L1 -474 5682 4402 294 376 85 14 chr13 53249321 53249603 -66495295 - L2 LINE L2 -823 2491 2190 30 0 0 0 chr13 53249610 53249640 -66495258 + AT_rich Low_complexity Low_complexity 1 30 0 2048 148 23 0 chr13 53249806 53250151 -66494747 - L1MA3 LINE L1 -469 5836 5484 390 304 154 20 chr13 53251026 53251227 -66493671 - MIR SINE MIR 0 262 35 26 30 0 0 chr13 53251290 53251323 -66493575 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 53251948 53251969 -66492929 + AT_rich Low_complexity Low_complexity 1 21 0 32 43 0 0 chr13 53252034 53252080 -66492818 + AT_rich Low_complexity Low_complexity 1 46 0 657 299 68 4 chr13 53252342 53252576 -66492322 - MIR SINE MIR 0 262 14 934 203 92 103 chr13 53252726 53253095 -66491803 - MLT1A1 LTR MaLR 0 365 1 184 277 205 24 chr13 53253645 53253728 -66491170 + L2 LINE L2 3171 3268 -4 2363 51 0 0 chr13 53256256 53256549 -66488349 - L1PA7 LINE L1 0 6154 5862 11214 136 25 20 chr13 53256726 53258640 -66486258 - Tigger1 DNA MER2_type -1 2417 495 948 147 7 0 chr13 53258635 53258778 -66486120 - Tigger1 DNA MER2_type -951 1467 1324 * 2160 166 49 42 chr13 53258832 53259285 -66485613 - Tigger1 DNA MER2_type -1957 461 6 1292 114 0 6 chr13 53259285 53259461 -66485437 + AluSg SINE Alu 1 175 -135 494 301 75 0 chr13 53259578 53259724 -66485174 - MIR SINE MIR -75 187 31 556 265 95 9 chr13 53259738 53259949 -66484949 + MIR SINE MIR 24 252 -10 21 0 0 0 chr13 53261695 53261716 -66483182 + AT_rich Low_complexity Low_complexity 1 21 0 1467 172 7 36 chr13 53263062 53263365 -66481533 - AluSx SINE Alu -18 294 1 272 356 7 14 chr13 53263581 53263727 -66481171 + GA-rich Low_complexity Low_complexity 1 145 0 356 221 139 0 chr13 53264599 53264685 -66480213 + L2 LINE L2 3174 3271 -1 1545 194 0 47 chr13 53266220 53266540 -66478358 + AluJb SINE Alu 2 306 -6 346 134 15 0 chr13 53266552 53266619 -66478279 + L1MA9 LINE L1 6244 6311 -1 228 111 0 0 chr13 53268446 53268482 -66476416 + (GA)n Simple_repeat Simple_repeat 1 36 0 295 321 106 44 chr13 53269792 53270085 -66474813 - L2 LINE L2 -521 2793 2483 951 193 0 6 chr13 53271679 53271855 -66473043 + AluJb SINE Alu 137 311 -1 2066 196 20 18 chr13 53273200 53273658 -66471240 - LTR40b LTR ERVL 0 462 4 204 267 69 30 chr13 53274237 53274338 -66470560 + MIR SINE MIR 94 198 -64 1657 147 3 45 chr13 53274793 53275105 -66469793 + AluSq SINE Alu 5 303 -10 2226 116 134 8 chr13 53275421 53275801 -66469097 - MSTA LTR MaLR 0 428 1 198 378 102 0 chr13 53276273 53276371 -66468527 + L2 LINE L2 2917 3024 -248 2149 86 31 20 chr13 53276948 53277240 -66467658 - AluSc SINE Alu -14 295 1 21 0 0 0 chr13 53279031 53279052 -66465846 + AT_rich Low_complexity Low_complexity 1 21 0 452 286 16 0 chr13 53279093 53279219 -66465679 + MER94 DNA DNA 7 134 0 6854 139 36 19 chr13 53279374 53280572 -66464326 + Tigger3b DNA MER2_type 14 1231 0 658 158 50 127 chr13 53280728 53280949 -66463949 - MER3 DNA MER1_type -4 205 2 211 358 159 23 chr13 53280954 53281300 -66463598 + L2 LINE L2 2582 2974 -340 25 31 0 0 chr13 53281802 53281834 -66463064 + AT_rich Low_complexity Low_complexity 1 32 0 2530 80 131 5 chr13 53281973 53282371 -66462527 - LTR7 LTR ERV1 -2 448 1 2267 119 48 13 chr13 53282371 53282750 -66462148 - HERVH LTR ERV1 0 7713 7322 1440 120 19 0 chr13 53282748 53282964 -66461934 - HERVH LTR ERV1 -1894 5819 5600 * 3528 126 2 2 chr13 53282965 53283480 -66461418 - HERVH LTR ERV1 -2564 5149 4635 2331 167 6 25 chr13 53283480 53283948 -66460950 - HERVH LTR ERV1 -2749 4622 3954 * 3462 109 0 6 chr13 53283934 53284439 -66460459 - HERVH LTR ERV1 -3720 3993 3492 972 127 7 0 chr13 53284429 53284579 -66460319 - HERVH LTR ERV1 -4423 3290 3140 * 14582 101 9 19 chr13 53284573 53286791 -66458107 - HERVH LTR ERV1 -4726 2987 793 3177 87 0 23 chr13 53286845 53287315 -66457583 - HERVH LTR ERV1 -7254 459 1 2498 88 131 5 chr13 53287317 53287715 -66457183 - LTR7 LTR ERV1 -2 448 1 324 279 176 60 chr13 53288439 53288672 -66456226 - MIR SINE MIR -1 261 2 1862 80 4 15 chr13 53288922 53289185 -66455713 + L1PA6 LINE L1 5895 6154 0 361 276 114 0 chr13 53289256 53289361 -66455537 + MIR SINE MIR 116 232 -30 2231 164 30 25 chr13 53289396 53289828 -66455070 - Tigger2a DNA MER2_type 0 434 1 292 211 44 56 chr13 53290121 53290211 -66454687 + LTR48B LTR ERV1 1 89 -555 * 849 215 60 78 chr13 53290196 53290578 -66454320 + MER39 LTR ERV1 259 633 -74 24 0 0 0 chr13 53290787 53290811 -66454087 + AT_rich Low_complexity Low_complexity 1 24 0 199 339 0 0 chr13 53292158 53292217 -66452681 - MIR SINE MIR -172 90 32 188 298 106 19 chr13 53292828 53292932 -66451966 - MIR SINE MIR -47 215 103 1952 95 0 8 chr13 53292936 53293188 -66451710 - AluSc SINE Alu -59 250 1 472 303 53 33 chr13 53294111 53294355 -66450543 + L2 LINE L2 1986 2234 -1080 284 261 96 26 chr13 53294424 53294539 -66450359 - L2 LINE L2 0 3313 3191 247 294 0 0 chr13 53294589 53294657 -66450241 + (CA)n Simple_repeat Simple_repeat 1 68 0 865 338 125 14 chr13 53294657 53295502 -66449396 + L2 LINE L2 2375 3313 0 2277 95 0 7 chr13 53295698 53295992 -66448906 - AluSx SINE Alu -20 292 1 308 301 189 0 chr13 53296004 53296147 -66448751 + MIR SINE MIR 70 239 -23 422 363 18 67 chr13 53297525 53297914 -66446984 + L2 LINE L2 2517 2886 -428 231 314 0 0 chr13 53297929 53297999 -66446899 + HsTC2 DNA Tc2 14 83 -1815 1463 216 32 0 chr13 53298689 53298967 -66445931 + AluJb SINE Alu 1 287 -25 393 243 0 0 chr13 53298989 53299096 -66445802 + (TA)n Simple_repeat Simple_repeat 2 108 0 250 282 47 0 chr13 53299112 53299197 -66445701 - L1MC4 LINE L1 -1340 6702 6614 1392 219 68 50 chr13 53299436 53299879 -66445019 + MER74B LTR ERVL 69 519 -103 241 267 13 53 chr13 53300615 53300690 -66444208 + L2 LINE L2 3201 3272 0 302 305 67 0 chr13 53300698 53300803 -66444095 + MIR3 SINE MIR 61 172 -36 21 36 0 0 chr13 53300831 53300859 -66444039 + AT_rich Low_complexity Low_complexity 1 28 0 23 117 0 0 chr13 53301082 53301210 -66443688 + AT_rich Low_complexity Low_complexity 1 128 0 4552 87 45 43 chr13 53302110 53302800 -66442098 - LTR8 LTR ERV1 0 691 1 21 0 0 0 chr13 53303151 53303172 -66441726 + AT_rich Low_complexity Low_complexity 1 21 0 1896 117 26 0 chr13 53303287 53303587 -66441311 - AluSx SINE Alu 0 322 16 31 0 0 0 chr13 53303716 53303747 -66441151 + AT_rich Low_complexity Low_complexity 1 31 0 2766 228 38 39 chr13 53303944 53304987 -66439911 + L1ME1 LINE L1 5149 6334 0 259 366 0 0 chr13 53305859 53305960 -66438938 + L2 LINE L2 3164 3264 -49 1668 260 28 15 chr13 53306220 53306506 -66438392 + L1ME2 LINE L1 5394 5675 -489 3892 128 19 3 chr13 53306506 53307099 -66437799 + LTR43 LTR ERV1 1 602 0 1711 209 18 28 chr13 53307108 53307505 -66437393 - MSTD LTR MaLR 0 396 4 1668 260 28 15 chr13 53307505 53307742 -66437156 + L1ME2 LINE L1 5682 5934 -230 987 221 19 5 chr13 53307799 53308007 -66436891 - MER58A DNA MER1_type -11 213 3 355 263 50 0 chr13 53308014 53308113 -66436785 + L1ME2 LINE L1 6034 6137 -27 180 176 0 0 chr13 53308579 53308613 -66436285 + L2 LINE L2 3277 3310 -3 198 281 94 16 chr13 53308625 53308689 -66436209 + MIR3 SINE MIR 132 200 -8 195 42 0 0 chr13 53309730 53309754 -66435144 + (TTTTTA)n Simple_repeat Simple_repeat 6 29 0 625 290 6 6 chr13 53309901 53310077 -66434821 + MER5B DNA MER1_type 1 176 -2 23 0 0 0 chr13 53310479 53310502 -66434396 + AT_rich Low_complexity Low_complexity 1 23 0 2708 170 30 48 chr13 53310989 53311553 -66433345 + MLT2B3 LTR ERVL 1 554 0 25 31 0 0 chr13 53311721 53311753 -66433145 + AT_rich Low_complexity Low_complexity 1 32 0 360 0 0 0 chr13 53312023 53312063 -66432835 + (TA)n Simple_repeat Simple_repeat 1 40 0 3252 36 0 0 chr13 53312065 53312450 -66432448 - L1PA5 LINE L1 -7 6147 5763 239 234 104 13 chr13 53312652 53312729 -66432169 + MER102b DNA MER1_type 35 118 -223 658 253 76 22 chr13 53312747 53312972 -66431926 + MER102b DNA MER1_type 93 329 -12 1391 193 51 0 chr13 53313398 53313518 -66431380 + AluJo SINE Alu 1 113 -199 228 67 0 0 chr13 53313518 53313548 -66431350 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1391 193 51 0 chr13 53313548 53313681 -66431217 + AluJo SINE Alu 113 267 -45 198 0 0 0 chr13 53314247 53314269 -66430629 + (T)n Simple_repeat Simple_repeat 1 22 0 197 282 28 42 chr13 53314551 53314622 -66430276 + L2 LINE L2 3203 3272 0 251 243 95 27 chr13 53315090 53315164 -66429734 - L2 LINE L2 -23 3249 3171 309 293 50 56 chr13 53315528 53315726 -66429172 + LTR67 LTR ERVL 359 555 -2 2374 105 0 0 chr13 53316226 53316539 -66428359 + AluSq SINE Alu 1 313 0 2303 175 49 9 chr13 53316785 53317230 -66427668 - MLT1C LTR MaLR -4 463 1 463 307 62 0 chr13 53317386 53317565 -66427333 + MIR SINE MIR 1 190 -72 25 0 0 0 chr13 53317751 53317776 -66427122 + AT_rich Low_complexity Low_complexity 1 25 0 1919 100 82 4 chr13 53318101 53318371 -66426527 - AluSg SINE Alu -19 291 1 23 0 0 0 chr13 53318373 53318396 -66426502 + AT_rich Low_complexity Low_complexity 1 23 0 955 218 38 19 chr13 53321358 53321569 -66423329 + MER58A DNA MER1_type 9 223 -1 184 256 90 13 chr13 53323505 53323583 -66421315 + MIR SINE MIR 166 249 -13 1739 172 0 0 chr13 53325198 53325483 -66419415 - AluJb SINE Alu -22 290 6 34 72 0 0 chr13 53326672 53326741 -66418157 + AT_rich Low_complexity Low_complexity 1 69 0 3191 233 43 15 chr13 53326968 53327844 -66417054 + L1ME1 LINE L1 5261 6161 -5 184 98 0 78 chr13 53330462 53330513 -66414385 + (AGGGGG)n Simple_repeat Simple_repeat 4 50 0 2060 122 3 3 chr13 53330579 53330890 -66414008 + AluSx SINE Alu 1 311 -1 486 0 0 0 chr13 53331036 53331090 -66413808 + (TA)n Simple_repeat Simple_repeat 2 55 0 492 333 72 13 chr13 53331354 53331591 -66413307 + MIR SINE MIR 2 252 -10 345 154 33 0 chr13 53331593 53331684 -66413214 + (TA)n Simple_repeat Simple_repeat 2 95 0 391 287 226 0 chr13 53332207 53332402 -66412496 + MIR SINE MIR 2 240 -22 652 233 129 0 chr13 53335351 53335514 -66409384 + MER5A DNA MER1_type 5 188 -1 643 266 52 47 chr13 53335750 53335830 -66409068 - MIR SINE MIR -27 235 157 3929 135 28 14 chr13 53335830 53336204 -66408694 - L1PA15 LINE L1 0 6165 5777 2385 81 0 0 chr13 53336204 53336502 -66408396 - AluSc SINE Alu -11 298 1 3929 135 28 14 chr13 53336502 53336779 -66408119 - L1PA15 LINE L1 -388 5777 5505 643 266 52 47 chr13 53336779 53336931 -66407967 - MIR SINE MIR -105 157 2 295 323 167 5 chr13 53338214 53338406 -66406492 - MIR SINE MIR -15 247 25 881 305 37 17 chr13 53340621 53341055 -66403843 + MLT1J1 LTR MaLR 8 448 -2 623 178 0 0 chr13 53341057 53341158 -66403740 + AluJ SINE Alu 3 103 -209 2670 194 46 98 chr13 53341164 53341929 -66402969 + MER50 LTR ERV1 10 734 0 232 116 0 47 chr13 53341929 53341968 -66402930 + AluJ SINE Alu 100 136 -166 520 315 25 0 chr13 53341968 53342130 -66402768 + AluJ SINE Alu 137 302 0 594 165 12 35 chr13 53342136 53342306 -66402592 + A-rich Low_complexity Low_complexity 3 168 0 23 0 0 0 chr13 53343734 53343757 -66401141 + AT_rich Low_complexity Low_complexity 1 23 0 574 345 76 20 chr13 53343783 53344177 -66400721 + L2 LINE L2 2430 2845 -469 481 257 103 51 chr13 53345552 53346039 -66398859 + HAL1 LINE L1 951 1462 -1045 470 17 17 0 chr13 53346287 53346346 -66398552 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 207 0 0 0 chr13 53346368 53346391 -66398507 + (TC)n Simple_repeat Simple_repeat 2 24 0 329 102 17 0 chr13 53346486 53346545 -66398353 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 216 67 0 0 chr13 53346617 53346647 -66398251 + (CAA)n Simple_repeat Simple_repeat 2 31 0 270 0 0 0 chr13 53349673 53349703 -66395195 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 195 42 0 0 chr13 53351003 53351027 -66393871 + (CAT)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr13 53351970 53351994 -66392904 + (TA)n Simple_repeat Simple_repeat 2 25 0 487 343 60 41 chr13 53352663 53353028 -66391870 + L2 LINE L2 2489 2860 -454 356 318 142 18 chr13 53353041 53353315 -66391583 + L2 LINE L2 3006 3313 0 463 211 29 29 chr13 53354635 53354739 -66390159 - MER5A DNA MER1_type -77 112 9 209 216 0 0 chr13 53354931 53354968 -66389930 - L2 LINE L2 -22 3250 3214 301 297 29 58 chr13 53355770 53355908 -66388990 - MIR SINE MIR -71 191 58 2259 158 53 12 chr13 53355954 53356365 -66388533 + MSTA LTR MaLR 1 428 0 752 265 126 5 chr13 53356367 53356582 -66388316 - MIR SINE MIR -10 252 12 1574 214 26 0 chr13 53356918 53357222 -66387676 - AluJo SINE Alu 0 312 1 228 224 149 0 chr13 53357698 53357765 -66387133 + LTR50 LTR ERVL 4 80 -715 310 250 119 54 chr13 53357785 53357953 -66386945 + LTR50 LTR ERVL 523 701 -94 263 308 154 35 chr13 53358486 53358655 -66386243 - MIR SINE MIR -66 196 8 21 36 0 0 chr13 53358962 53358990 -66385908 + AT_rich Low_complexity Low_complexity 1 28 0 2149 118 0 10 chr13 53359177 53359491 -66385407 - AluSq SINE Alu 0 313 3 210 268 0 0 chr13 53359876 53359932 -66384966 + A-rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr13 53360874 53360903 -66383995 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 53362098 53362120 -66382778 + AT_rich Low_complexity Low_complexity 1 22 0 378 296 43 21 chr13 53364647 53364833 -66380065 + L1MC4a LINE L1 5721 5910 -1898 693 264 13 63 chr13 53365001 53365240 -66379658 + MER77 LTR ERV1 1 227 -378 1400 263 36 6 chr13 53365332 53365689 -66379209 + MER77 LTR ERV1 236 603 -2 1687 102 188 82 chr13 53365900 53366304 -66378594 + LTR7 LTR ERV1 4 450 0 2647 133 51 0 chr13 53366456 53366869 -66378029 - MER57B LTR ERV1 0 434 1 225 270 148 0 chr13 53366941 53367009 -66377889 - MIR SINE MIR -67 141 72 1468 247 54 17 chr13 53368277 53368783 -66376115 + LTR28 LTR ERV1 1 424 -1 2148 156 31 14 chr13 53369641 53369999 -66374899 + THE1B LTR MaLR 1 364 0 239 280 110 10 chr13 53371452 53371552 -66373346 + MIR SINE MIR 146 255 -7 230 369 47 27 chr13 53371840 53371989 -66372909 - L2 LINE L2 -185 3087 2936 1970 245 73 20 chr13 53372242 53372724 -66372174 - L1ME2 LINE L1 -1 6163 5631 2186 149 8 3 chr13 53372724 53373086 -66371812 + THE1B LTR MaLR 1 364 0 1970 245 73 20 chr13 53373086 53373301 -66371597 - L1ME2 LINE L1 -533 5631 5429 1061 199 8 25 chr13 53373301 53373537 -66371361 - MER39B LTR ERV1 0 653 422 38931 71 20 3 chr13 53373543 53379584 -66365314 + L1PA5 LINE L1 1 6147 -7 1029 25 57 6 chr13 53379593 53379751 -66365147 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 2229 166 42 7 chr13 53379758 53380167 -66364731 - MER39B LTR ERV1 -230 423 1 377 205 262 22 chr13 53380167 53380389 -66364509 - L1ME2 LINE L1 -743 5403 5161 322 248 24 80 chr13 53380486 53380611 -66364287 - L1ME2 LINE L1 -1123 5023 4906 1320 275 50 16 chr13 53380624 53381180 -66363718 - L1ME2 LINE L1 -1296 4850 4276 383 192 48 64 chr13 53381221 53381346 -66363552 - L1ME2 LINE L1 -1946 4200 4078 430 240 10 0 chr13 53381787 53381891 -66363007 + MER70B LTR ERVL 456 560 -18 2122 249 65 75 chr13 53381914 53383403 -66361495 - L1ME2 LINE L1 -2061 4085 2611 254 351 57 18 chr13 53384877 53385040 -66359858 - MIR SINE MIR -69 139 13 23 54 0 0 chr13 53386719 53386756 -66358142 + AT_rich Low_complexity Low_complexity 1 37 0 301 298 39 60 chr13 53387087 53387288 -66357610 + MIR SINE MIR 22 217 -45 438 200 30 20 chr13 53387607 53387707 -66357191 + L2 LINE L2 3212 3312 -1 485 319 84 26 chr13 53388212 53388785 -66356113 - L1MC4a LINE L1 -1899 5909 5304 1042 166 215 12 chr13 53389189 53389436 -66355462 - AluSx SINE Alu -5 297 1 320 324 116 34 chr13 53389516 53389982 -66354916 - L1MC4a LINE L1 -1314 4832 4329 4820 217 25 23 chr13 53390054 53392157 -66352741 - L1MB2 LINE L1 -77 6094 3985 21 0 0 0 chr13 53392185 53392206 -66352692 + AT_rich Low_complexity Low_complexity 1 21 0 303 318 12 12 chr13 53392421 53392594 -66352304 + (TA)n Simple_repeat Simple_repeat 1 173 0 31 58 0 0 chr13 53392749 53392801 -66352097 + AT_rich Low_complexity Low_complexity 1 52 0 406 347 65 44 chr13 53392983 53393441 -66351457 - L1MB2 LINE L1 -3103 3043 2576 235 261 15 0 chr13 53393599 53393664 -66351234 + L1MEd LINE L1 660 725 -5394 1020 261 68 12 chr13 53393725 53394050 -66350848 + L2 LINE L2 2196 2538 -776 386 140 0 0 chr13 53394051 53394108 -66350790 + Tigger2 DNA MER2_type 1 57 -2661 246 224 103 0 chr13 53394122 53394180 -66350718 - MER2 DNA MER2_type -1 344 281 * 683 238 41 17 chr13 53394156 53394328 -66350570 - MER8 DNA MER2_type -62 177 2 1153 307 43 38 chr13 53394339 53395101 -66349797 + L2 LINE L2 2552 3313 0 262 355 137 0 chr13 53395580 53395704 -66349194 + MIR3 SINE MIR 51 191 -17 182 416 26 0 chr13 53397461 53397538 -66347360 - L2 LINE L2 -35 3278 3200 953 228 28 5 chr13 53397706 53397917 -66346981 - MER58A DNA MER1_type -8 216 1 6366 120 31 65 chr13 53398458 53399667 -66345231 - Tigger3b DNA MER2_type 0 1231 65 1165 155 163 47 chr13 53399674 53399932 -66344966 + AluJo SINE Alu 9 296 -16 309 258 0 30 chr13 53399933 53399999 -66344899 - Tigger3b DNA MER2_type -1163 68 5 283 250 150 36 chr13 53400662 53400802 -66344096 + L2 LINE L2 3158 3313 0 435 281 116 18 chr13 53400988 53401152 -66343746 + MIR SINE MIR 9 188 -74 21 0 0 0 chr13 53401302 53401323 -66343575 + AT_rich Low_complexity Low_complexity 1 21 0 1522 47 0 0 chr13 53402610 53402910 -66341988 + L1PA5 LINE L1 5798 6150 -4 183 327 140 0 chr13 53402956 53403063 -66341835 - L2 LINE L2 -229 3084 2963 1915 272 60 43 chr13 53403406 53403634 -66341264 - L1 LINE L1 -769 5377 5154 1963 126 10 7 chr13 53403634 53403927 -66340971 - AluSq SINE Alu -19 294 1 1915 272 60 43 chr13 53403927 53404796 -66340102 - L1 LINE L1 -992 5154 4332 5747 108 21 7 chr13 53406973 53408321 -66336577 + L1PA13 LINE L1 4795 6163 0 251 261 0 0 chr13 53408358 53408427 -66336471 + (TAG)n Simple_repeat Simple_repeat 2 70 0 24 0 0 0 chr13 53408547 53408571 -66336327 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 53409530 53409558 -66335340 + AT_rich Low_complexity Low_complexity 1 28 0 931 134 0 35 chr13 53411381 53411553 -66333345 - L1MC3 LINE L1 0 7785 7620 398 235 157 0 chr13 53411584 53411699 -66333199 - L1MC3 LINE L1 -865 6920 6788 1989 179 174 116 chr13 53411788 53412210 -66332688 - L1MC3 LINE L1 -159 7626 7230 225 247 94 12 chr13 53412210 53412295 -66332603 - MLT1F1 LTR MaLR -434 133 42 1989 179 174 116 chr13 53412295 53412576 -66332322 - L1MC3 LINE L1 -555 7230 6793 1443 262 58 33 chr13 53412626 53413726 -66331172 - L1ME1 LINE L1 -9 6157 4920 886 247 0 5 chr13 53413731 53413917 -66330981 + MLT1A1 LTR MaLR 1 185 -180 229 318 36 27 chr13 53414301 53414411 -66330487 - L2 LINE L2 -8 3264 3154 501 313 96 59 chr13 53415148 53415471 -66329427 + L1MEd LINE L1 905 1239 -4880 1178 245 77 9 chr13 53416116 53416455 -66328443 + MLT1D LTR MaLR 140 501 -4 2064 165 86 8 chr13 53416482 53416877 -66328021 + MSTB LTR MaLR 1 426 0 208 308 0 0 chr13 53417673 53417738 -66327160 - L2 LINE L2 -252 3061 2997 273 432 0 32 chr13 53418330 53418485 -66326413 - L2 LINE L2 -6 3266 3117 28 48 0 0 chr13 53419543 53419585 -66325313 + AT_rich Low_complexity Low_complexity 1 42 0 4786 216 34 17 chr13 53419592 53421365 -66323533 + L1MC1 LINE L1 3799 5614 -719 6980 97 11 2 chr13 53421365 53422325 -66322573 - LTR5 LTR ERVK 0 969 1 4786 216 34 17 chr13 53422325 53422700 -66322198 + L1MC1 LINE L1 5614 5981 -352 2946 50 5 8 chr13 53422700 53423083 -66321815 + LTR7 LTR ERV1 1 382 -68 12362 89 6 7 chr13 53423083 53424821 -66320077 + HERVH LTR ERV1 1251 2987 -4726 899 140 7 0 chr13 53424815 53424965 -66319933 + HERVH LTR ERV1 3140 3290 -4423 * 2270 121 0 9 chr13 53424955 53425302 -66319596 + HERVH LTR ERV1 3492 3835 -3878 319 234 117 0 chr13 53426016 53426110 -66318788 - L2 LINE L2 -4 3309 3205 258 330 11 96 chr13 53426396 53426584 -66318314 - L2 LINE L2 -559 2755 2584 21 0 0 0 chr13 53427373 53427394 -66317504 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr13 53428665 53428704 -66316194 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 507 33 0 0 chr13 53428703 53428764 -66316134 + (TA)n Simple_repeat Simple_repeat 1 61 0 1082 207 8 15 chr13 53430322 53430583 -66314315 + L1M4 LINE L1 2646 2904 -3242 2868 10 0 0 chr13 53431510 53431822 -66313076 + AluYb8 SINE Alu 1 312 -6 34 24 0 0 chr13 53431876 53431917 -66312981 + AT_rich Low_complexity Low_complexity 1 41 0 10543 190 50 26 chr13 53432042 53432880 -66312018 - L1PB3 LINE L1 -2 6209 5392 2504 54 0 0 chr13 53432880 53433175 -66311723 - AluY SINE Alu -16 295 1 10543 190 50 26 chr13 53433175 53435204 -66309694 - L1PB3 LINE L1 -819 5392 3242 188 83 0 28 chr13 53435204 53435240 -66309658 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 10543 190 50 26 chr13 53435240 53435910 -66308988 - L1PB3 LINE L1 -2969 3242 2589 207 0 0 0 chr13 53435912 53435935 -66308963 + (TTA)n Simple_repeat Simple_repeat 2 24 0 26409 142 7 9 chr13 53435939 53442315 -66302583 - L1PA8A LINE L1 -18 6428 5 3497 255 65 33 chr13 53442313 53443484 -66301414 - L1PB3 LINE L1 -3607 2596 1463 * 2048 154 0 0 chr13 53443484 53443789 -66301109 - AluSc SINE Alu -2 307 3 2865 10 0 0 chr13 53443799 53444110 -66300788 - AluYb8 SINE Alu -7 311 1 3497 255 65 33 chr13 53444110 53444705 -66300193 - L1PB3 LINE L1 -4748 1455 771 847 162 7 73 chr13 53444705 53444915 -66299983 - MLT2A2 LTR ERVL 0 453 293 207 139 0 0 chr13 53444933 53444969 -66299929 + (TA)n Simple_repeat Simple_repeat 1 36 0 748 165 0 0 chr13 53444985 53445106 -66299792 - L1P4 LINE L1 -500 5665 5545 6120 163 17 41 chr13 53445106 53445772 -66299126 - L1P4 LINE L1 -555 5610 4929 2231 110 3 3 chr13 53445772 53446082 -66298816 - AluSx SINE Alu -2 310 1 6120 163 17 41 chr13 53446082 53446998 -66297900 - L1P4 LINE L1 -1236 4929 4073 32 67 0 0 chr13 53447042 53447102 -66297796 + AT_rich Low_complexity Low_complexity 1 60 0 24 0 0 0 chr13 53449500 53449524 -66295374 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr13 53450413 53450445 -66294453 + AT_rich Low_complexity Low_complexity 1 32 0 648 288 81 28 chr13 53450676 53450961 -66293937 - LTR33 LTR ERVL -13 508 209 222 380 22 22 chr13 53451203 53451295 -66293603 - MIR SINE MIR -168 94 3 3579 201 19 16 chr13 53451593 53452458 -66292440 - L1 LINE L1 -2521 5044 4174 2258 101 0 3 chr13 53452458 53452755 -66292143 + AluSc SINE Alu 2 297 -12 3579 201 19 16 chr13 53452755 53452778 -66292120 - L1 LINE L1 -3391 4174 4153 * 5355 144 2 2 chr13 53452776 53453632 -66291266 + L1PA15 LINE L1 5310 6165 0 4328 212 42 24 chr13 53453635 53455275 -66289623 - L1 LINE L1 -3398 4167 2491 14433 203 14 6 chr13 53505291 53509579 -66235319 + L1PB1 LINE L1 1479 5791 -360 261 83 0 0 chr13 53509579 53509615 -66235283 + (TA)n Simple_repeat Simple_repeat 2 37 0 14433 203 14 6 chr13 53509615 53509971 -66234927 + L1PB1 LINE L1 5791 6143 -8 862 123 36 0 chr13 53510959 53511097 -66233801 - MER67C LTR ERV1 0 710 568 1509 141 42 157 chr13 53511097 53511480 -66233418 + MER1B DNA MER1_type 1 339 0 1204 164 18 91 chr13 53511482 53511756 -66233142 - MER67C LTR ERV1 -137 573 320 2374 221 39 34 chr13 53511760 53512865 -66232033 - LTR27 LTR ERV1 0 1755 3 1351 225 26 0 chr13 53512865 53513176 -66231722 - MER67C LTR ERV1 -391 319 1 224 303 77 58 chr13 53514866 53515021 -66229877 - MIR SINE MIR -14 248 91 423 340 133 40 chr13 53515093 53515490 -66229408 + L2 LINE L2 2880 3313 0 303 237 119 68 chr13 53516339 53516516 -66228382 + LTR41 LTR ERVL 587 772 -1 189 0 0 0 chr13 53517537 53517558 -66227340 + (GA)n Simple_repeat Simple_repeat 1 21 0 786 316 33 11 chr13 53517661 53517936 -66226962 - MLT1H1 LTR MaLR -100 455 175 916 104 42 7 chr13 53518363 53518507 -66226391 + MSTA LTR MaLR 1 149 -279 335 303 23 8 chr13 53518527 53518659 -66226239 - MLT1H1 LTR MaLR -454 136 3 1063 104 7 0 chr13 53518980 53519124 -66225774 - AluSg/x SINE Alu -12 300 156 1736 113 0 0 chr13 53519129 53519368 -66225530 - AluSq SINE Alu -74 239 1 442 322 0 0 chr13 53520073 53520216 -66224682 - MLT1-int LTR MaLR -830 541 399 1043 279 28 45 chr13 53520411 53520770 -66224128 - MLT1H1 LTR MaLR -8 547 195 2249 94 3 0 chr13 53521130 53521428 -66223470 - AluY SINE Alu -12 299 1 189 121 0 0 chr13 53521950 53521983 -66222915 + (TG)n Simple_repeat Simple_repeat 1 33 0 2964 172 78 17 chr13 53521986 53521998 -66222900 + MER4D LTR ERV1 1 11 -892 207 0 0 0 chr13 53521998 53522021 -66222877 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2964 172 78 17 chr13 53522021 53522652 -66222246 + MER4D LTR ERV1 11 683 -220 1136 237 36 23 chr13 53522668 53523015 -66221883 - LTR43 LTR ERV1 -59 461 195 821 177 146 42 chr13 53523229 53523336 -66221562 + MER4D LTR ERV1 680 774 -129 2416 126 20 3 chr13 53523336 53523694 -66221204 - THE1B LTR MaLR 0 364 1 821 177 146 42 chr13 53523694 53523778 -66221120 + MER4D LTR ERV1 774 891 -12 250 290 97 41 chr13 53524256 53524401 -66220497 + HAL1 LINE L1 349 501 -2006 2043 150 33 31 chr13 53524434 53524793 -66220105 - THE1B LTR MaLR 0 364 5 21 0 0 0 chr13 53525707 53525728 -66219170 + AT_rich Low_complexity Low_complexity 1 21 0 213 310 17 0 chr13 53525754 53525812 -66219086 - L2 LINE L2 -5 3308 3250 1092 223 37 66 chr13 53525895 53526222 -66218676 - MSTD LTR MaLR 0 396 157 2187 73 24 3 chr13 53526222 53526509 -66218389 - AluY SINE Alu -18 293 1 1092 223 37 66 chr13 53526509 53526662 -66218236 - MSTD LTR MaLR -239 157 1 320 310 31 85 chr13 53528987 53529245 -66215653 + MIR SINE MIR 3 246 -16 22 35 0 0 chr13 53529894 53529923 -66214975 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 53530277 53530301 -66214597 + AT_rich Low_complexity Low_complexity 1 24 0 334 286 6 30 chr13 53530937 53530962 -66213936 + (TA)n Simple_repeat Simple_repeat 2 26 -139 297 0 0 0 chr13 53530962 53530995 -66213903 + (CA)n Simple_repeat Simple_repeat 2 34 0 334 286 6 30 chr13 53530995 53531137 -66213761 + (TA)n Simple_repeat Simple_repeat 26 165 0 24 0 0 0 chr13 53531155 53531179 -66213719 + AT_rich Low_complexity Low_complexity 1 24 0 414 349 13 13 chr13 53531660 53531812 -66213086 - MER91A DNA MER1_type -43 153 2 311 250 14 0 chr13 53532805 53532877 -66212021 + U6 snRNA snRNA 4 76 -31 2054 130 6 62 chr13 53532890 53533243 -66211655 + MER1B DNA MER1_type 7 339 0 820 207 57 141 chr13 53536115 53536554 -66208344 - MER31B LTR ERV1 -43 423 22 1693 192 0 10 chr13 53537645 53537942 -66206956 + AluJb SINE Alu 2 295 -17 1931 214 86 8 chr13 53538716 53539193 -66205705 + MLT2B2 LTR ERVL 1 514 -1 2318 164 36 2 chr13 53539636 53540050 -66204848 + MSTA LTR MaLR 1 428 0 336 316 76 51 chr13 53540116 53540353 -66204545 + MIR SINE MIR 20 262 0 225 330 34 17 chr13 53540358 53540476 -66204422 + L2 LINE L2 2700 2819 -495 22 35 0 0 chr13 53540493 53540522 -66204376 + AT_rich Low_complexity Low_complexity 1 29 0 378 221 47 12 chr13 53540731 53540817 -66204081 + L2 LINE L2 3224 3312 -1 195 42 0 0 chr13 53540823 53540847 -66204051 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 180 125 0 0 chr13 53541538 53541570 -66203328 + (GAA)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr13 53541839 53541861 -66203037 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr13 53542120 53542155 -66202743 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr13 53542595 53542620 -66202278 + AT_rich Low_complexity Low_complexity 1 25 0 268 359 47 26 chr13 53542703 53542895 -66202003 + L2 LINE L2 2130 2325 -989 2822 98 62 7 chr13 53543103 53543523 -66201375 + MLT2A1 LTR ERVL 1 443 -1 6246 149 59 14 chr13 53543618 53544796 -66200102 - Tigger3b DNA MER2_type 0 1231 1 321 316 84 7 chr13 53545052 53545207 -66199691 - MER69A DNA AcHobo -1 176 10 474 208 10 10 chr13 53545300 53545396 -66199502 - MLT1C LTR MaLR 0 467 372 1574 222 33 18 chr13 53545868 53546201 -66198697 - MLT1A1 LTR MaLR 0 365 28 3716 206 105 34 chr13 53547183 53548593 -66196305 + L1PBa LINE L1 6 1659 -5204 1160 214 55 78 chr13 53548740 53549123 -66195775 - MLT1A2 LTR MaLR 0 374 1 502 299 41 31 chr13 53549152 53549446 -66195452 + HAL1 LINE L1 1915 2211 -296 221 270 0 16 chr13 53549745 53549808 -66195090 + A-rich Low_complexity Low_complexity 4 65 0 190 313 0 16 chr13 53549817 53549881 -66195017 + L2 LINE L2 1362 1424 -1890 338 342 74 90 chr13 53550745 53551370 -66193528 + L2 LINE L2 2257 2871 -443 263 311 48 0 chr13 53551796 53551899 -66192999 - HAL1 LINE L1 -1597 910 803 2113 107 10 10 chr13 53551908 53552208 -66192690 + AluSx SINE Alu 5 304 -8 1302 205 102 84 chr13 53552297 53552745 -66192153 - MLT1D LTR MaLR -10 495 36 2455 70 0 3 chr13 53552745 53553057 -66191841 + AluY SINE Alu 1 311 0 1302 205 102 84 chr13 53553057 53553086 -66191812 - MLT1D LTR MaLR -469 36 9 225 279 47 23 chr13 53553182 53553268 -66191630 - HAL1 LINE L1 -1843 664 577 462 255 43 87 chr13 53553475 53553706 -66191192 - HAL1 LINE L1 -2263 244 24 28 61 0 0 chr13 53554120 53554169 -66190729 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr13 53554608 53554643 -66190255 + AT_rich Low_complexity Low_complexity 1 35 0 690 213 85 6 chr13 53555486 53555650 -66189248 + MER5B DNA MER1_type 1 177 -1 23 0 0 0 chr13 53556368 53556391 -66188507 + AT_rich Low_complexity Low_complexity 1 23 0 280 265 224 7 chr13 53556493 53556640 -66188258 - MIR SINE MIR 0 262 84 585 196 89 0 chr13 53557022 53557134 -66187764 + FLAM_A SINE Alu 1 122 -11 894 178 45 75 chr13 53557338 53557649 -66187249 + MER33 DNA MER1_type 1 302 -22 861 207 98 73 chr13 53557764 53558236 -66186662 - MER39 LTR ERV1 0 707 1 2326 137 11 6 chr13 53558283 53558640 -66186258 - THE1B LTR MaLR 0 364 6 22 0 0 0 chr13 53559735 53559757 -66185141 + AT_rich Low_complexity Low_complexity 1 22 0 3339 160 61 8 chr13 53561193 53561787 -66183111 + MER4D LTR ERV1 1 625 -278 2430 102 18 21 chr13 53561787 53562169 -66182729 + L1MA1 LINE L1 5906 6286 -16 1603 154 4 26 chr13 53562247 53562513 -66182385 + MER4E LTR ERV1 517 776 -3 1406 241 111 29 chr13 53562735 53563093 -66181805 - L1MB5 LINE L1 -2 6172 5751 315 0 0 0 chr13 53563093 53563128 -66181770 + (TG)n Simple_repeat Simple_repeat 2 36 0 1406 241 111 29 chr13 53563128 53563340 -66181558 - L1MB5 LINE L1 -423 5751 5558 969 297 103 44 chr13 53563569 53566129 -66178769 + L1ME3 LINE L1 2351 5211 -1329 256 257 29 9 chr13 53566300 53566405 -66178493 + (TA)n Simple_repeat Simple_repeat 2 108 0 237 70 0 0 chr13 53566471 53566514 -66178384 - L1M4 LINE L1 -846 5300 5258 493 264 159 64 chr13 53566586 53567006 -66177892 + L1ME3 LINE L1 5726 6185 -371 502 243 81 0 chr13 53567043 53567216 -66177682 - L1M4 LINE L1 -2210 3936 3750 594 312 85 7 chr13 53567224 53567506 -66177392 + L1ME3 LINE L1 6229 6532 -24 2005 245 35 53 chr13 53567529 53568129 -66176769 + MER77 LTR ERV1 9 597 -8 985 131 17 0 chr13 53568157 53568332 -66176566 + GA-rich Low_complexity Low_complexity 3 180 0 763 185 8 0 chr13 53568396 53568526 -66176372 + FLAM_A SINE Alu 2 132 -1 704 177 0 7 chr13 53568526 53568673 -66176225 + GA-rich Low_complexity Low_complexity 2 147 0 339 65 0 0 chr13 53568981 53569027 -66175871 + (CA)n Simple_repeat Simple_repeat 1 46 0 919 207 16 0 chr13 53569160 53569348 -66175550 - AluJo SINE Alu -2 310 120 5251 189 63 38 chr13 53569355 53570967 -66173931 - L1PB3 LINE L1 -4 6150 4479 2377 214 11 11 chr13 53570967 53571538 -66173360 + L1PB3 LINE L1 3883 4453 -1693 547 165 16 71 chr13 53571557 53571684 -66173214 - AluJo SINE Alu -189 123 4 315 197 26 26 chr13 53571747 53571823 -66173075 - Tigger2 DNA MER2_type -2641 77 2 189 0 0 0 chr13 53572412 53572433 -66172465 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2126 109 0 10 chr13 53572436 53572730 -66172168 - AluSg SINE Alu -19 291 1 312 403 16 0 chr13 53572770 53572899 -66171999 - L2 LINE L2 -35 3237 3107 932 235 39 0 chr13 53574154 53574358 -66170540 - MER20 DNA MER1_type -7 212 1 901 279 92 45 chr13 53574373 53574842 -66170056 + L1MDb LINE L1 139 629 -5914 * 1831 230 98 29 chr13 53574839 53575536 -66169362 + L1MDb LINE L1 1362 2106 -4434 499 271 93 100 chr13 53576097 53576517 -66168381 + LTR33A LTR ERVL 107 523 0 186 233 17 50 chr13 53576518 53576535 -66168363 - L3b LINE CR1 0 1583 1567 2318 59 3 0 chr13 53576535 53576873 -66168025 + AluY SINE Alu 1 311 0 186 233 17 50 chr13 53576873 53576915 -66167983 - L3b LINE CR1 -16 1567 1526 186 167 0 0 chr13 53577746 53577782 -66167116 + A-rich Low_complexity Low_complexity 1 36 0 315 319 75 65 chr13 53577842 53578385 -66166513 + L2 LINE L2 1565 2113 -1201 2337 74 0 0 chr13 53578670 53578995 -66165903 + AluY SINE Alu 1 311 0 26 30 0 0 chr13 53580511 53580544 -66164354 + AT_rich Low_complexity Low_complexity 1 33 0 1583 224 43 6 chr13 53580659 53581011 -66163887 + MLT1A1 LTR MaLR 1 365 0 2020 144 29 47 chr13 53581500 53581843 -66163055 - THE1C LTR MaLR 0 375 38 2048 128 0 3 chr13 53581843 53582133 -66162765 + AluSx SINE Alu 21 309 -3 2020 144 29 47 chr13 53582133 53582171 -66162727 - THE1C LTR MaLR -337 38 1 1839 257 113 51 chr13 53582850 53583564 -66161334 + L1MDb LINE L1 2517 3185 -3355 1960 113 0 7 chr13 53583564 53583847 -66161051 + AluY SINE Alu 1 281 -30 375 23 0 0 chr13 53583848 53583892 -66161006 + (TA)n Simple_repeat Simple_repeat 1 44 0 1839 257 113 51 chr13 53583892 53584959 -66159939 + L1MDb LINE L1 3184 4351 -2189 226 187 22 55 chr13 53585072 53585163 -66159735 + (TTATA)n Simple_repeat Simple_repeat 4 91 0 231 331 83 32 chr13 53585255 53585412 -66159486 - L3 LINE CR1 -228 1349 1185 2273 97 3 0 chr13 53585941 53586239 -66158659 - AluSx SINE Alu -13 299 1 30 45 0 0 chr13 53586774 53586818 -66158080 + AT_rich Low_complexity Low_complexity 1 44 0 241 314 112 25 chr13 53588490 53588732 -66156166 + L2 LINE L2 1842 2104 -1210 24 32 0 0 chr13 53589057 53589088 -66155810 + AT_rich Low_complexity Low_complexity 1 31 0 454 174 0 0 chr13 53590364 53590450 -66154448 + L1MB1 LINE L1 6083 6168 0 281 26 26 0 chr13 53590502 53590540 -66154358 + (TG)n Simple_repeat Simple_repeat 2 40 0 * 360 0 0 0 chr13 53590539 53590579 -66154319 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 241 269 39 10 chr13 53590630 53590734 -66154164 + (TA)n Simple_repeat Simple_repeat 2 108 0 3251 198 38 16 chr13 53591281 53591917 -66152981 - MER54B LTR ERVL 0 793 144 38 22 0 0 chr13 53591933 53591978 -66152920 + AT_rich Low_complexity Low_complexity 1 45 0 975 119 6 31 chr13 53592022 53592182 -66152716 - MER54B LTR ERVL -637 156 1 255 242 0 0 chr13 53592324 53592386 -66152512 + A-rich Low_complexity Low_complexity 1 62 0 22 0 0 0 chr13 53592731 53592753 -66152145 + AT_rich Low_complexity Low_complexity 1 22 0 2247 100 3 28 chr13 53593347 53593666 -66151232 - AluSx SINE Alu -1 311 1 2504 56 0 0 chr13 53594020 53594326 -66150572 - AluY SINE Alu -5 306 1 28 29 0 0 chr13 53594337 53594372 -66150526 + AT_rich Low_complexity Low_complexity 1 35 0 532 270 112 23 chr13 53597222 53597481 -66147417 - L1MC5 LINE L1 -431 7530 7249 730 266 92 71 chr13 53597494 53598042 -66146856 - L1MC5 LINE L1 -883 7078 6597 1425 235 19 30 chr13 53598095 53598461 -66146437 + MLT1A1 LTR MaLR 4 365 0 292 331 67 44 chr13 53598862 53599388 -66145510 - HAL1b LINE L1 -742 606 69 452 86 52 40 chr13 53599545 53599719 -66145179 + (TA)n Simple_repeat Simple_repeat 1 176 0 33 25 0 0 chr13 53599727 53599767 -66145131 + AT_rich Low_complexity Low_complexity 1 40 0 259 329 0 0 chr13 53599767 53599852 -66145046 - L1ME1 LINE L1 -72 6094 6010 542 216 27 64 chr13 53600525 53600735 -66144163 - L1ME1 LINE L1 -143 6023 5821 612 265 100 71 chr13 53600736 53601045 -66143853 - L2 LINE L2 -8 3305 2988 240 200 70 20 chr13 53601078 53601178 -66143720 - L1ME1 LINE L1 -1741 4405 4301 22 56 0 0 chr13 53601264 53601300 -66143598 + AT_rich Low_complexity Low_complexity 1 36 0 3821 147 5 2 chr13 53601360 53601967 -66142931 - L1PA14 LINE L1 -48 6113 5505 1936 246 21 34 chr13 53602016 53602646 -66142252 - L1ME1 LINE L1 -331 5835 5215 1377 222 104 43 chr13 53602766 53603391 -66141507 - L1ME1 LINE L1 -1633 4513 3851 28 0 0 0 chr13 53603444 53603472 -66141426 + AT_rich Low_complexity Low_complexity 1 28 0 300 27 0 0 chr13 53604024 53604061 -66140837 + (TG)n Simple_repeat Simple_repeat 2 38 0 2373 141 40 31 chr13 53604148 53604573 -66140325 - L1PA16 LINE L1 -9 6157 5729 1159 120 0 0 chr13 53604574 53604749 -66140149 + L1PA16 LINE L1 5551 5725 -441 230 343 80 23 chr13 53604758 53604933 -66139965 + L2 LINE L2 3013 3197 -116 1942 141 0 10 chr13 53606464 53606762 -66138136 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr13 53608106 53608135 -66136763 + AT_rich Low_complexity Low_complexity 1 29 0 293 360 38 42 chr13 53610001 53610237 -66134661 - L2 LINE L2 -872 2442 2208 193 351 81 56 chr13 53610265 53610550 -66134348 - L2 LINE L2 -1184 2130 1839 2375 134 13 5 chr13 53610801 53611173 -66133725 - THE1C LTR MaLR 0 375 1 8407 131 45 66 chr13 53611173 53612585 -66132313 - THE1C-int LTR MaLR 0 1580 204 1997 155 3 0 chr13 53612585 53612894 -66132004 - AluSx SINE Alu -2 310 1 8407 131 45 66 chr13 53612894 53613094 -66131804 - THE1C-int LTR MaLR -1376 204 1 2342 103 60 0 chr13 53613094 53613444 -66131454 - THE1C LTR MaLR 0 375 5 25 0 0 0 chr13 53614164 53614189 -66130709 + AT_rich Low_complexity Low_complexity 1 25 0 1953 145 116 0 chr13 53614697 53615069 -66129829 + L1PA13 LINE L1 5749 6163 0 726 150 20 13 chr13 53616039 53616192 -66128706 + CT-rich Low_complexity Low_complexity 1 154 0 199 114 0 91 chr13 53616792 53616836 -66128062 - L2 LINE L2 0 3313 3274 27 0 0 0 chr13 53617393 53617420 -66127478 + AT_rich Low_complexity Low_complexity 1 27 0 2826 7 0 0 chr13 53618740 53619050 -66125848 - AluYa5 SINE Alu -1 310 1 718 276 104 5 chr13 53619491 53619712 -66125186 + MIR SINE MIR 6 248 -14 1369 296 54 28 chr13 53619862 53620396 -66124502 + MLT1H1 LTR MaLR 1 548 -7 1866 151 83 14 chr13 53620448 53620799 -66124099 + THE1C LTR MaLR 1 375 0 372 316 0 0 chr13 53621140 53621298 -66123600 + (TATATG)n Simple_repeat Simple_repeat 5 162 0 216 0 0 0 chr13 53621595 53621619 -66123279 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 366 23 0 0 chr13 53622553 53622596 -66122302 + (TG)n Simple_repeat Simple_repeat 2 44 0 258 200 0 18 chr13 53622616 53622671 -66122227 + GA-rich Low_complexity Low_complexity 2 55 0 1736 179 30 0 chr13 53623487 53623783 -66121115 + AluSx SINE Alu 1 305 -7 2051 213 129 6 chr13 53623920 53624423 -66120475 - MER70B LTR ERVL -9 569 5 320 311 76 8 chr13 53624757 53624889 -66120009 + MER5A DNA MER1_type 43 183 -6 304 283 24 24 chr13 53625534 53625700 -66119198 + (TG)n Simple_repeat Simple_repeat 2 167 0 1106 194 5 22 chr13 53627387 53627609 -66117289 + AluJb SINE Alu 87 304 -8 21 0 0 0 chr13 53627639 53627660 -66117238 + AT_rich Low_complexity Low_complexity 1 21 0 1154 232 54 14 chr13 53627903 53628200 -66116698 + MLT1E1 LTR MaLR 1 309 -345 521 186 8 0 chr13 53628211 53628340 -66116558 + GA-rich Low_complexity Low_complexity 1 130 0 568 230 44 96 chr13 53628348 53628558 -66116340 + MLT1E3 LTR MaLR 207 447 -177 642 255 79 5 chr13 53628581 53628797 -66116101 - L1MEc LINE L1 -3994 2402 2171 728 188 50 17 chr13 53628813 53628994 -66115904 - L1MB2 LINE L1 0 6171 5985 371 336 38 21 chr13 53629058 53629296 -66115602 - L1MEc LINE L1 -6132 264 23 195 42 0 0 chr13 53629838 53629862 -66115036 + (TG)n Simple_repeat Simple_repeat 1 24 0 284 102 20 0 chr13 53629862 53629911 -66114987 + (GA)n Simple_repeat Simple_repeat 2 51 0 338 363 21 32 chr13 53630201 53630339 -66114559 - L2 LINE L2 -417 2897 2760 2259 86 10 13 chr13 53630339 53630640 -66114258 + AluY SINE Alu 1 300 -11 338 363 21 32 chr13 53630640 53630691 -66114207 - L2 LINE L2 -554 2760 2710 527 338 15 0 chr13 53630756 53630954 -66113944 - L2 LINE L2 -798 2516 2316 846 248 125 20 chr13 53631010 53631462 -66113436 - MLT1E LTR MaLR 0 593 1 264 300 50 10 chr13 53632529 53632629 -66112269 + LOR1-int LTR ERV1 6404 6507 -1613 21 0 0 0 chr13 53633567 53633588 -66111310 + AT_rich Low_complexity Low_complexity 1 21 0 3861 167 127 28 chr13 53633946 53634779 -66110119 - MER21A LTR ERV1 0 931 16 240 238 0 0 chr13 53634781 53634844 -66110054 + (TA)n Simple_repeat Simple_repeat 1 63 0 237 65 0 0 chr13 53637348 53637379 -66107519 + (TG)n Simple_repeat Simple_repeat 2 32 0 2619 20 7 3 chr13 53637595 53637901 -66106997 + AluY SINE Alu 1 307 -4 33 25 0 0 chr13 53638253 53638293 -66106605 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr13 53638453 53638474 -66106424 + AT_rich Low_complexity Low_complexity 1 21 0 317 321 9 0 chr13 53639389 53639501 -66105397 + (TG)n Simple_repeat Simple_repeat 1 113 0 21 0 0 0 chr13 53639564 53639585 -66105313 + AT_rich Low_complexity Low_complexity 1 21 0 706 240 0 0 chr13 53640015 53640161 -66104737 + FRAM SINE Alu 15 160 -16 22 56 0 0 chr13 53640569 53640605 -66104293 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 53640901 53640922 -66103976 + AT_rich Low_complexity Low_complexity 1 21 0 1225 188 11 15 chr13 53641098 53641364 -66103534 - L1MB7 LINE L1 -18 6166 5902 2103 107 0 0 chr13 53642636 53642944 -66101954 - AluSg1 SINE Alu 0 308 1 1728 127 44 29 chr13 53643705 53644010 -66100888 - AluSx SINE Alu 0 311 3 241 322 70 9 chr13 53644103 53644218 -66100680 + L3 LINE CR1 1442 1563 -14 250 281 10 10 chr13 53645498 53645594 -66099304 - L1MB7 LINE L1 -276 5845 5750 1513 177 7 40 chr13 53645603 53645903 -66098995 - AluJb SINE Alu -17 295 6 657 173 8 0 chr13 53645910 53646037 -66098861 - FRAM SINE Alu 0 40 1 237 250 42 8 chr13 53646315 53646435 -66098463 + (TA)n Simple_repeat Simple_repeat 2 125 0 884 258 45 38 chr13 53646728 53646992 -66097906 - LTR40a LTR ERVL 0 519 254 513 73 0 0 chr13 53647010 53647078 -66097820 - MADE1 DNA Mariner -1 79 12 * 544 253 122 35 chr13 53647060 53647289 -66097609 - LTR40a LTR ERVL -270 249 1 350 238 82 49 chr13 53647289 53647411 -66097487 - MIR SINE MIR -125 137 12 263 295 49 33 chr13 53647941 53648063 -66096835 - L3 LINE CR1 -820 757 634 1084 183 5 0 chr13 53648065 53648262 -66096636 + L1PB1 LINE L1 3 200 -6663 * 13941 204 42 23 chr13 53648250 53650176 -66094722 + L1PB1 LINE L1 621 2510 -4408 180 0 0 0 chr13 53650176 53650196 -66094702 + (TAA)n Simple_repeat Simple_repeat 2 21 0 13941 204 42 23 chr13 53650196 53652520 -66092378 + L1PB1 LINE L1 2510 5151 -1767 254 29 29 0 chr13 53652520 53652555 -66092343 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 13941 204 42 23 chr13 53652555 53654357 -66090541 + L1PB1 LINE L1 5151 6918 0 30 59 0 0 chr13 53654489 53654540 -66090358 + AT_rich Low_complexity Low_complexity 1 51 0 205 409 108 16 chr13 53655212 53655535 -66089363 - L3 LINE CR1 -989 588 236 300 222 0 0 chr13 53655726 53655798 -66089100 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 3020 94 7 7 chr13 53656274 53656722 -66088176 + LTR7 LTR ERV1 1 448 -2 236 81 81 0 chr13 53656827 53656864 -66088034 + MADE1 DNA Mariner 41 80 0 188 238 16 0 chr13 53656924 53656987 -66087911 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 219 356 132 21 chr13 53657964 53658388 -66086510 - L2 LINE L2 -1299 2015 1545 1717 169 146 13 chr13 53658460 53658838 -66086060 + MSTA LTR MaLR 1 428 0 8284 151 24 47 chr13 53658840 53660454 -66084444 + MSTA-int LTR MaLR 3 1580 0 1411 199 162 8 chr13 53660454 53660825 -66084073 + MSTA LTR MaLR 1 428 0 355 303 67 25 chr13 53661305 53661424 -66083474 + L2 LINE L2 236 359 -2955 1553 244 73 59 chr13 53661459 53662086 -66082812 + L1M3e LINE L1 821 1456 -5574 413 274 18 0 chr13 53662096 53662209 -66082689 - L1M3e LINE L1 -6236 794 680 345 224 26 0 chr13 53662205 53662281 -66082617 + L1M3e LINE L1 286 363 -6667 * 717 218 6 0 chr13 53662286 53662451 -66082447 + L1M3e LINE L1 3181 3346 -3760 1569 151 41 33 chr13 53662495 53662860 -66082038 + L1MA8 LINE L1 5911 6278 -13 524 336 89 33 chr13 53662873 53663233 -66081665 + L2 LINE L2 1407 1786 -1528 824 292 23 11 chr13 53663234 53663498 -66081400 - LTR16B LTR ERVL -7 457 191 2405 257 96 34 chr13 53663545 53665827 -66079071 - L1M4 LINE L1 -3092 2878 367 457 342 24 62 chr13 53665892 53666263 -66078635 - L1M4 LINE L1 -5526 365 9 514 338 33 42 chr13 53666263 53666594 -66078304 + L2 LINE L2 1823 2150 -1164 559 220 8 30 chr13 53667033 53667165 -66077733 - MER94 DNA DNA -3 131 3 249 312 108 45 chr13 53667200 53667514 -66077384 - L2 LINE L2 -1244 2070 1737 2496 69 0 0 chr13 53668716 53669021 -66075877 - AluY SINE Alu -6 305 1 27 29 0 0 chr13 53669317 53669351 -66075547 + AT_rich Low_complexity Low_complexity 1 34 0 228 135 0 0 chr13 53669520 53669557 -66075341 + (TG)n Simple_repeat Simple_repeat 2 38 0 382 341 106 66 chr13 53669770 53670166 -66074732 - L2 LINE L2 -2506 808 384 2510 68 0 0 chr13 53670166 53670477 -66074421 - AluY SINE Alu 0 311 1 382 341 106 66 chr13 53670477 53670611 -66074287 - L2 LINE L2 -2930 384 257 248 307 13 13 chr13 53670701 53670776 -66074122 + L2 LINE L2 3238 3312 -1 24 53 0 0 chr13 53671487 53671525 -66073373 + AT_rich Low_complexity Low_complexity 1 38 0 180 378 178 7 chr13 53671596 53671731 -66073167 - MIR3 SINE MIR -28 180 23 1155 266 114 47 chr13 53672617 53673276 -66071622 - L1MC4a LINE L1 -1823 5985 5283 285 288 116 10 chr13 53673652 53673850 -66071048 - L1MC4a LINE L1 -1298 4848 4630 25 0 0 0 chr13 53673875 53673900 -66070998 + AT_rich Low_complexity Low_complexity 1 25 0 400 276 29 0 chr13 53674198 53674303 -66070595 + MIR SINE MIR 66 173 -89 238 157 14 57 chr13 53674345 53674415 -66070483 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 386 257 40 26 chr13 53675718 53675870 -66069028 + L1MA8 LINE L1 4706 4859 -1287 21 0 0 0 chr13 53675881 53675902 -66068996 + AT_rich Low_complexity Low_complexity 1 21 0 341 308 43 0 chr13 53676117 53676234 -66068664 - MIR SINE MIR -93 169 48 1138 154 0 5 chr13 53676554 53676749 -66068149 - L1PA13 LINE L1 0 6163 5970 5516 166 29 9 chr13 53676749 53678152 -66066746 + L1MA8 LINE L1 4851 6280 -11 556 142 0 121 chr13 53678440 53678581 -66066317 - FLAM_C SINE Alu -9 124 1 205 291 85 48 chr13 53679431 53679596 -66065302 - MIR SINE MIR -26 236 66 1962 127 7 0 chr13 53679648 53679932 -66064966 + AluSg SINE Alu 1 286 -24 216 0 0 0 chr13 53679936 53679960 -66064938 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 261 0 0 0 chr13 53680390 53680419 -66064479 + (T)n Simple_repeat Simple_repeat 1 29 0 427 330 22 11 chr13 53680428 53680610 -66064288 + MIR SINE MIR 77 260 -2 1805 267 73 13 chr13 53680713 53681308 -66063590 + MLT1E2 LTR MaLR 1 624 -2 216 0 0 0 chr13 53681636 53681660 -66063238 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 1510 197 93 48 chr13 53682021 53682241 -66062657 - MER67C LTR ERV1 -4 510 302 1363 83 0 10 chr13 53682241 53682434 -66062464 - L1PA5 LINE L1 -3 6151 5961 1510 197 93 48 chr13 53682434 53682764 -66062134 - MER67C LTR ERV1 -212 302 1 256 259 49 0 chr13 53683560 53683641 -66061257 + MIR SINE MIR 132 216 -46 247 291 142 30 chr13 53684937 53685071 -66059827 + L2 LINE L2 3118 3266 -47 463 360 68 0 chr13 53685239 53685475 -66059423 + MIR SINE MIR 5 256 -6 30 45 0 0 chr13 53685575 53685619 -66059279 + AT_rich Low_complexity Low_complexity 1 44 0 960 283 159 25 chr13 53685737 53686343 -66058555 - L1ME3A LINE L1 -4 6166 5472 209 271 0 0 chr13 53688205 53688253 -66056645 + (TG)n Simple_repeat Simple_repeat 1 48 0 422 348 61 71 chr13 53688812 53689223 -66055675 - L2 LINE L2 0 3272 2866 2032 88 56 7 chr13 53691487 53691772 -66053126 + AluSg1 SINE Alu 1 299 -10 397 365 105 40 chr13 53692495 53692925 -66051973 + L2 LINE L2 2378 2835 -479 37 0 0 0 chr13 53693112 53693149 -66051749 + AT_rich Low_complexity Low_complexity 1 37 0 630 84 28 0 chr13 53693508 53693615 -66051283 + (TCTA)n Simple_repeat Simple_repeat 1 110 0 1192 255 15 7 chr13 53693617 53693888 -66051010 - AluJb SINE Alu -39 273 1 405 310 92 41 chr13 53693909 53694302 -66050596 - L1ME3A LINE L1 -1451 4695 4283 397 263 95 15 chr13 53694422 53694572 -66050326 - MIR SINE MIR -63 145 35 23 0 0 0 chr13 53695630 53695653 -66049245 + AT_rich Low_complexity Low_complexity 1 23 0 517 239 122 10 chr13 53696545 53696750 -66048148 - L1ME3A LINE L1 -214 5956 5729 190 127 14 56 chr13 53696826 53696897 -66048001 + (TA)n Simple_repeat Simple_repeat 1 68 0 382 296 93 18 chr13 53696970 53697196 -66047702 - L1ME3A LINE L1 -1988 5820 5578 261 0 0 0 chr13 53697656 53697685 -66047213 + (A)n Simple_repeat Simple_repeat 1 29 0 29 47 0 0 chr13 53702324 53702367 -66042531 + AT_rich Low_complexity Low_complexity 1 43 0 1048 238 0 4 chr13 53702518 53702762 -66042136 - L1MC3 LINE L1 -8 8057 7815 2408 242 36 38 chr13 53702769 53703748 -66041150 - L1MC3 LINE L1 -887 7178 887 1064 180 13 9 chr13 53703737 53703970 -66040928 + L1MB2 LINE L1 4964 5197 -949 * 1878 201 20 29 chr13 53703973 53704416 -66040482 + L1MB2 LINE L1 5688 6126 -45 1600 192 0 17 chr13 53704416 53704708 -66040190 + AluJo SINE Alu 1 287 -25 2360 262 69 45 chr13 53704721 53706558 -66038340 + L1MB7 LINE L1 4283 6184 0 2406 78 3 0 chr13 53706865 53707174 -66037724 - AluY SINE Alu -1 310 1 249 83 0 0 chr13 53707267 53707303 -66037595 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 * 365 95 16 0 chr13 53707302 53707365 -66037533 + (TC)n Simple_repeat Simple_repeat 1 64 0 1676 188 0 10 chr13 53707365 53707673 -66037225 - AluJb SINE Alu -7 305 1 333 0 0 0 chr13 53707981 53708018 -66036880 + (TG)n Simple_repeat Simple_repeat 2 38 0 320 215 13 0 chr13 53708286 53708365 -66036533 + MER116 DNA Mariner 1 80 0 25 65 0 0 chr13 53708538 53708584 -66036314 + AT_rich Low_complexity Low_complexity 1 46 0 373 315 42 32 chr13 53708984 53709200 -66035698 + L1MEd LINE L1 562 779 -5340 420 294 108 13 chr13 53709827 53710058 -66034840 + L1MEd LINE L1 2171 2423 -3706 362 260 82 25 chr13 53710088 53710407 -66034491 + L1MEd LINE L1 2877 3213 -2916 1672 154 0 18 chr13 53710781 53711053 -66033845 + AluSx SINE Alu 34 300 -12 25 0 0 0 chr13 53711090 53711115 -66033783 + AT_rich Low_complexity Low_complexity 1 25 0 188 35 35 0 chr13 53711130 53711159 -66033739 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 201 138 0 0 chr13 53711246 53711275 -66033623 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 338 292 46 46 chr13 53711317 53711557 -66033341 + L1MEd LINE L1 3865 4104 -2025 201 261 17 17 chr13 53712581 53712700 -66032198 + (TA)n Simple_repeat Simple_repeat 1 119 0 23 0 0 0 chr13 53712956 53712979 -66031919 + AT_rich Low_complexity Low_complexity 1 23 0 3047 164 79 23 chr13 53713182 53714044 -66030854 - L1MCa LINE L1 -4531 1895 888 204 40 0 0 chr13 53714044 53714069 -66030829 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 5751 181 14 6 chr13 53714070 53716191 -66028707 - L1PB2 LINE L1 -8 6143 4004 1196 152 17 104 chr13 53716186 53716475 -66028423 - L1MCa LINE L1 -5543 883 620 * 22 0 0 0 chr13 53717076 53717098 -66027800 + AT_rich Low_complexity Low_complexity 1 22 0 2430 61 3 0 chr13 53717098 53717394 -66027504 - AluY SINE Alu -14 297 1 24 0 0 0 chr13 53717572 53717596 -66027302 + AT_rich Low_complexity Low_complexity 1 24 0 5770 108 18 13 chr13 53718058 53719455 -66025443 + L1PA14 LINE L1 4758 6161 0 1518 285 30 52 chr13 53719575 53720165 -66024733 + MLT1E LTR MaLR 9 585 -8 1948 141 58 0 chr13 53720746 53721072 -66023826 - MER7A DNA MER2_type -1 345 3 491 272 37 0 chr13 53722069 53722205 -66022693 + MIR SINE MIR 122 262 0 258 123 31 77 chr13 53722240 53722305 -66022593 + MSTC LTR MaLR 1 62 -366 190 280 120 40 chr13 53722326 53722451 -66022447 + MIR SINE MIR 78 212 -50 318 282 47 0 chr13 53722685 53722770 -66022128 - L1MC4 LINE L1 -1339 6703 6615 2473 49 0 7 chr13 53722772 53723078 -66021820 - AluY SINE Alu -7 304 1 2010 107 34 0 chr13 53723179 53723470 -66021428 - AluY SINE Alu -10 301 1 2074 124 3 0 chr13 53723500 53723798 -66021100 - AluSx SINE Alu -12 300 2 281 111 0 0 chr13 53724339 53724384 -66020514 - L1MA2 LINE L1 0 6304 6260 239 205 26 51 chr13 53724868 53724946 -66019952 + GA-rich Low_complexity Low_complexity 4 79 0 27 73 0 0 chr13 53727525 53727580 -66017318 + AT_rich Low_complexity Low_complexity 1 55 0 629 288 40 26 chr13 53728512 53728738 -66016160 + MLT1J LTR MaLR 237 465 -46 354 367 19 13 chr13 53731248 53731406 -66013492 - L2 LINE L2 -260 3053 2895 1550 203 4 14 chr13 53732189 53732470 -66012428 - MER1B DNA MER1_type -61 278 1 970 294 96 21 chr13 53732488 53732872 -66012026 - L2 LINE L2 -798 2516 2104 597 342 163 52 chr13 53732872 53733665 -66011233 - L2 LINE L2 -2355 959 79 6178 43 145 14 chr13 53733751 53734638 -66010260 + L1P LINE L1 2 1005 -5141 1938 141 0 0 chr13 53734670 53734960 -66009938 + AluSx SINE Alu 2 291 -21 24 0 0 0 chr13 53735961 53735985 -66008913 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr13 53736915 53736950 -66007948 + AT_rich Low_complexity Low_complexity 1 35 0 2158 119 0 0 chr13 53737490 53737785 -66007113 - AluSc SINE Alu -14 295 1 508 324 85 52 chr13 53738265 53738609 -66006289 + L1MEd LINE L1 915 1246 -1244 2078 114 4 0 chr13 53738609 53738933 -66005965 + AluSp SINE Alu 4 328 0 508 324 85 52 chr13 53738933 53739171 -66005727 + L1MEd LINE L1 1246 1597 -893 319 287 50 99 chr13 53739893 53740196 -66004702 - L2 LINE L2 0 3313 3026 241 250 0 0 chr13 53740659 53740703 -66004195 - MER2 DNA MER2_type 0 345 302 397 232 12 0 chr13 53740743 53740825 -66004073 - MER8 DNA MER2_type -150 89 7 407 305 75 32 chr13 53741001 53741188 -66003710 - LTR33 LTR ERVL -310 211 17 324 70 0 0 chr13 53741196 53741239 -66003659 + (CA)n Simple_repeat Simple_repeat 2 44 0 218 32 32 0 chr13 53741240 53741271 -66003627 + (TA)n Simple_repeat Simple_repeat 2 33 0 1590 168 47 50 chr13 53741463 53741803 -66003095 - MER44D DNA MER2_type 0 609 1 2093 125 0 7 chr13 53741901 53742198 -66002700 + AluSg SINE Alu 1 295 -15 24 32 0 0 chr13 53742391 53742422 -66002476 + AT_rich Low_complexity Low_complexity 1 31 0 275 319 0 11 chr13 53742569 53742660 -66002238 - MIR SINE MIR -108 154 65 546 262 85 0 chr13 53742672 53742836 -66002062 + MIR SINE MIR 12 189 -73 972 328 78 15 chr13 53742859 53743256 -66001642 + MLT1G1 LTR MaLR 1 422 -173 1495 213 17 7 chr13 53743379 53743680 -66001218 - AluJb SINE Alu -8 304 1 313 47 0 23 chr13 53743924 53743967 -66000931 + U2 snRNA snRNA 1 42 -146 393 268 47 37 chr13 53743982 53744172 -66000726 + MLT1-int LTR MaLR 350 541 -830 343 361 22 11 chr13 53744446 53744626 -66000272 + MLT1-int LTR MaLR 692 873 -498 26 0 0 0 chr13 53744626 53744652 -66000246 + AT_rich Low_complexity Low_complexity 1 26 0 2258 172 52 0 chr13 53744903 53745310 -65999588 + MSTA LTR MaLR 1 428 0 818 267 84 15 chr13 53745543 53746068 -65998830 + MLT1G3 LTR MaLR 1 595 0 193 189 0 0 chr13 53746072 53746109 -65998789 + MIR SINE MIR 226 262 0 30 27 0 0 chr13 53746156 53746193 -65998705 + AT_rich Low_complexity Low_complexity 1 37 0 1924 133 68 11 chr13 53746347 53746700 -65998198 + THE1C LTR MaLR 3 375 0 413 308 0 8 chr13 53746819 53746939 -65997959 + L2 LINE L2 3192 3310 -3 281 366 32 0 chr13 53746996 53747089 -65997809 - MIR3 SINE MIR -26 182 87 252 0 0 0 chr13 53748174 53748202 -65996696 + (TG)n Simple_repeat Simple_repeat 1 28 0 280 265 15 0 chr13 53748401 53748469 -65996429 - L2 LINE L2 -8 3305 3237 277 308 30 38 chr13 53748978 53749111 -65995787 - L2 LINE L2 -1466 1848 1717 229 255 0 0 chr13 53749112 53749163 -65995735 + (CA)n Simple_repeat Simple_repeat 2 52 0 279 236 0 28 chr13 53749418 53749490 -65995408 + CT-rich Low_complexity Low_complexity 4 73 0 1670 177 10 3 chr13 53751522 53751821 -65993077 - AluJo SINE Alu -1 311 11 25 0 0 0 chr13 53751832 53751857 -65993041 + AT_rich Low_complexity Low_complexity 1 25 0 43 20 0 0 chr13 53752014 53752064 -65992834 + AT_rich Low_complexity Low_complexity 1 50 0 292 300 83 105 chr13 53752505 53752826 -65992072 - L3 LINE CR1 -4 1573 1260 608 213 5 56 chr13 53752826 53753023 -65991875 + MER53 DNA DNA 1 187 -2 292 300 83 105 chr13 53753023 53753074 -65991824 - L3 LINE CR1 -317 1260 1209 22 0 0 0 chr13 53753650 53753672 -65991226 + AT_rich Low_complexity Low_complexity 1 22 0 7478 248 74 29 chr13 53754059 53756048 -65988850 + L1PA15 LINE L1 2 1901 -4896 2059 57 7 18 chr13 53756048 53756329 -65988569 + L1PA8 LINE L1 5895 6172 0 7478 248 74 29 chr13 53756329 53758127 -65986771 + L1PA15 LINE L1 1901 3992 -2805 5505 133 11 18 chr13 53758145 53759910 -65984988 + L1PA15 LINE L1 5053 6812 -4 24 32 0 0 chr13 53759936 53759967 -65984931 + AT_rich Low_complexity Low_complexity 1 31 0 1521 198 116 56 chr13 53760820 53761305 -65983593 - MER67D LTR ERV1 0 514 1 2021 121 3 0 chr13 53761485 53761775 -65983123 - AluSp SINE Alu -22 291 1 356 167 30 0 chr13 53762220 53762286 -65982612 - MIR SINE MIR -113 149 82 9992 93 3 1 chr13 53762714 53764111 -65980787 + L1PA7 LINE L1 3872 5271 -875 6807 54 9 2 chr13 53764212 53765080 -65979818 + L1PA7 LINE L1 5281 6154 0 365 223 46 61 chr13 53765398 53765537 -65979361 + MSTB LTR MaLR 1 203 -223 1780 172 7 0 chr13 53765537 53765827 -65979071 - AluSx SINE Alu -20 292 1 365 223 46 61 chr13 53765827 53765876 -65979022 + MSTB LTR MaLR 203 251 -175 662 181 0 192 chr13 53766370 53766641 -65978257 + MER20 DNA MER1_type 1 219 0 1742 186 3 3 chr13 53767109 53767416 -65977482 + AluSx SINE Alu 1 307 -5 306 0 0 0 chr13 53767576 53767610 -65977288 + (TG)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr13 53769665 53769687 -65975211 + AT_rich Low_complexity Low_complexity 1 22 0 225 298 7 33 chr13 53770243 53770394 -65974504 + T-rich Low_complexity Low_complexity 4 150 0 24 0 0 0 chr13 53770437 53770461 -65974437 + AT_rich Low_complexity Low_complexity 1 24 0 325 273 61 59 chr13 53770995 53771440 -65973458 - L1MEd LINE L1 -1026 1979 1440 24 0 0 0 chr13 53772043 53772067 -65972831 + AT_rich Low_complexity Low_complexity 1 24 0 2538 167 71 24 chr13 53772403 53772936 -65971962 + L1MC1 LINE L1 5776 6333 0 841 261 73 67 chr13 53773055 53773412 -65971486 + LTR16A1 LTR ERVL 81 439 -18 221 230 30 10 chr13 53773784 53773884 -65971014 + (TA)n Simple_repeat Simple_repeat 1 102 0 * 238 152 61 0 chr13 53773820 53773886 -65971012 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 1413 152 0 0 chr13 53773887 53774091 -65970807 - AluSx SINE Alu -108 204 1 23 0 0 0 chr13 53774357 53774380 -65970518 + AT_rich Low_complexity Low_complexity 1 23 0 2089 122 0 0 chr13 53774427 53774721 -65970177 - AluSq SINE Alu -19 294 1 197 241 101 0 chr13 53777223 53777302 -65967596 - L3b LINE CR1 -204 1379 1293 298 275 148 7 chr13 53777393 53777542 -65967356 + L2 LINE L2 2188 2357 -957 339 331 56 94 chr13 53777731 53778211 -65966687 + L2 LINE L2 2809 3270 -2 250 208 19 0 chr13 53778433 53778486 -65966412 - L2 LINE L2 -5 3308 3255 25 51 0 0 chr13 53778685 53778724 -65966174 + AT_rich Low_complexity Low_complexity 1 39 0 747 156 0 8 chr13 53778935 53779057 -65965841 - L1M4 LINE L1 -526 5648 5528 7030 257 50 13 chr13 53779067 53781522 -65963376 - L1M4 LINE L1 -793 5353 2809 1777 262 45 107 chr13 53781500 53781766 -65963132 - L1M4 LINE L1 -5124 1418 1137 * 495 80 13 13 chr13 53781766 53781841 -65963057 - MADE1 DNA Mariner -5 75 1 1777 262 45 107 chr13 53781841 53783026 -65961872 - L1M4 LINE L1 -5405 1137 5 203 355 110 82 chr13 53783399 53783717 -65961181 - L2 LINE L2 -13 3259 2933 223 344 99 32 chr13 53784077 53784298 -65960600 + L2 LINE L2 2241 2476 -838 22 35 0 0 chr13 53784507 53784536 -65960362 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 53784713 53784743 -65960155 + AT_rich Low_complexity Low_complexity 1 30 0 237 368 60 26 chr13 53786497 53786614 -65958284 + MIR3 SINE MIR 81 201 -7 363 293 67 13 chr13 53786775 53786944 -65957954 + MIR SINE MIR 4 184 -62 874 284 124 34 chr13 53787268 53787705 -65957193 - L2 LINE L2 -5 3308 2833 180 274 321 0 chr13 53787751 53787835 -65957063 - L2 LINE L2 -1075 2239 2129 218 341 70 47 chr13 53787912 53788096 -65956802 - MIR3 SINE MIR -43 165 4 1672 25 5 0 chr13 53788264 53788464 -65956434 + L1PA5 LINE L1 5946 6146 -8 2251 222 26 21 chr13 53789206 53789675 -65955223 - MLT2B3 LTR ERVL 0 554 84 1594 167 46 101 chr13 53789945 53790471 -65954427 + LTR54B LTR ERV1 1 497 -1 213 375 42 0 chr13 53790511 53790583 -65954315 - MER5A DNA MER1_type -72 117 43 * 222 323 16 0 chr13 53790538 53790600 -65954298 + MER5A DNA MER1_type 114 176 -13 23 78 0 0 chr13 53790663 53790714 -65954184 + AT_rich Low_complexity Low_complexity 1 51 0 324 247 108 0 chr13 53790890 53790983 -65953915 - L2 LINE L2 -15 3298 3196 363 230 161 0 chr13 53791049 53791136 -65953762 - MER5A DNA MER1_type -85 104 4 275 206 75 28 chr13 53791798 53791905 -65952993 + L1MA8 LINE L1 6175 6286 -5 21 36 0 0 chr13 53791906 53791934 -65952964 + AT_rich Low_complexity Low_complexity 1 28 0 1608 215 36 15 chr13 53792125 53792516 -65952382 - MER63B DNA MER1_type -36 400 2 183 217 12 24 chr13 53793953 53794036 -65950862 + GA-rich Low_complexity Low_complexity 3 84 0 186 306 121 16 chr13 53794842 53794966 -65949932 - MIR SINE MIR -56 152 16 2189 190 29 94 chr13 53796000 53796680 -65948218 + MER92B LTR ERV1 1 636 0 22 35 0 0 chr13 53797057 53797086 -65947812 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 53798362 53798383 -65946515 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr13 53798722 53798759 -65946139 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr13 53799549 53799580 -65945318 + AT_rich Low_complexity Low_complexity 1 31 0 796 307 57 62 chr13 53799684 53800172 -65944726 - L2 LINE L2 0 3313 2828 1364 140 133 8 chr13 53800230 53800494 -65944404 - MSTA LTR MaLR -131 297 1 186 296 0 0 chr13 53800494 53800538 -65944360 + L2 LINE L2 2576 2619 -695 646 107 12 0 chr13 53800538 53800638 -65944260 + MSTA LTR MaLR 268 428 0 22 56 0 0 chr13 53801182 53801218 -65943680 + AT_rich Low_complexity Low_complexity 1 36 0 589 254 73 11 chr13 53801673 53801850 -65943048 - MER5A DNA MER1_type 0 189 2 186 71 0 0 chr13 53801874 53801902 -65942996 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 360 317 42 0 chr13 53802580 53802700 -65942198 + L1MEc LINE L1 1770 1894 -4502 25 31 0 0 chr13 53802808 53802840 -65942058 + AT_rich Low_complexity Low_complexity 1 32 0 2096 99 3 0 chr13 53802965 53803290 -65941608 + AluSx SINE Alu 1 326 0 2211 107 0 0 chr13 53803707 53804007 -65940891 + AluSx SINE Alu 1 300 -12 1877 125 32 42 chr13 53804348 53804661 -65940237 + AluSx SINE Alu 1 310 -2 188 65 0 32 chr13 53804719 53804750 -65940148 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 805 140 28 9 chr13 53804751 53804966 -65939932 + CT-rich Low_complexity Low_complexity 1 218 0 21 0 0 0 chr13 53805095 53805116 -65939782 + AT_rich Low_complexity Low_complexity 1 21 0 925 36 0 0 chr13 53805116 53805227 -65939671 - L1PA3 LINE L1 0 6155 6045 665 76 0 0 chr13 53805227 53805319 -65939579 + L1PA3 LINE L1 5851 5942 -213 331 269 38 106 chr13 53805633 53805793 -65939105 - LTR33A LTR ERVL -371 152 4 225 139 0 0 chr13 53805810 53805853 -65939045 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 25 0 0 0 chr13 53805946 53805971 -65938927 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr13 53806196 53806230 -65938668 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr13 53806367 53806392 -65938506 + AT_rich Low_complexity Low_complexity 1 25 0 24 91 0 0 chr13 53806496 53806562 -65938336 + AT_rich Low_complexity Low_complexity 1 66 0 372 290 35 28 chr13 53807436 53807581 -65937317 + MIR SINE MIR 43 188 -74 303 235 15 0 chr13 53809854 53809922 -65934976 - LTR16B LTR ERVL 0 464 396 1409 186 30 4 chr13 53810340 53810604 -65934294 + AluJb SINE Alu 21 291 -21 1593 302 47 37 chr13 53810613 53810833 -65934065 - HERV16 LTR ERVL -2709 2287 2071 1484 220 36 12 chr13 53810833 53811169 -65933729 - MER2 DNA MER2_type 0 344 1 1593 302 47 37 chr13 53811169 53811709 -65933189 - HERV16 LTR ERVL -2925 2071 1597 1457 354 33 3 chr13 53811793 53812456 -65932442 - HERV16 LTR ERVL -3583 1413 731 1972 204 50 9 chr13 53812573 53813010 -65931888 - MLT1C LTR MaLR -12 455 1 2241 105 0 13 chr13 53813402 53813717 -65931181 - AluSx SINE Alu -1 311 1 604 285 103 61 chr13 53813927 53814352 -65930546 - LTR16B LTR ERVL -19 445 3 25 51 0 0 chr13 53814569 53814608 -65930290 + AT_rich Low_complexity Low_complexity 1 39 0 268 309 81 0 chr13 53814776 53814899 -65929999 + L2 LINE L2 1901 2033 -1281 1922 157 135 6 chr13 53815003 53815359 -65929539 + MSTA LTR MaLR 3 404 -24 6081 205 16 6 chr13 53815369 53816638 -65928260 + L1P LINE L1 3784 5064 -1082 330 307 73 0 chr13 53816666 53816858 -65928040 + L1M4 LINE L1 2603 2808 -3338 399 135 24 143 chr13 53816860 53816986 -65927912 + L1MB7 LINE L1 6066 6176 -8 618 242 27 22 chr13 53816994 53817217 -65927681 + L1M4 LINE L1 2819 3042 -3104 337 241 18 27 chr13 53817288 53817400 -65927498 - MER97b DNA MER1_type? 0 1053 943 1584 239 23 87 chr13 53817603 53818033 -65926865 - MER97c DNA MER1_type? -519 571 190 297 0 0 0 chr13 53818033 53818066 -65926832 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1584 239 23 87 chr13 53818066 53818243 -65926655 - MER97c DNA MER1_type? -900 190 3 421 338 46 28 chr13 53818309 53818525 -65926373 - L2 LINE L2 -1643 1671 1452 1821 171 0 3 chr13 53818593 53818897 -65926001 - AluJb SINE Alu -9 303 1 565 283 61 19 chr13 53818991 53819203 -65925695 - MIR SINE MIR -18 244 24 6895 186 146 22 chr13 53820192 53820981 -65923917 - MER52A LTR ERV1 0 1755 1065 2685 76 24 0 chr13 53820981 53821350 -65923548 - L1PA8 LINE L1 -3 6169 5792 6895 186 146 22 chr13 53821350 53822121 -65922777 - MER52A LTR ERV1 -690 1065 1 369 341 35 58 chr13 53822530 53822756 -65922142 + MIR SINE MIR 20 240 -22 21 36 0 0 chr13 53823830 53823858 -65921040 + AT_rich Low_complexity Low_complexity 1 28 0 4032 99 2 0 chr13 53824543 53825096 -65919802 - MER41A LTR ERV1 0 554 1 233 313 113 33 chr13 53825378 53825528 -65919370 - L2 LINE L2 -1402 1912 1751 26 30 0 0 chr13 53825606 53825639 -65919259 + AT_rich Low_complexity Low_complexity 1 33 0 2124 161 8 25 chr13 53825906 53826304 -65918594 - L1PA16 LINE L1 -9 6157 5767 22 43 0 21 chr13 53826379 53826397 -65918501 + AT_rich Low_complexity Low_complexity 1 18 -28 701 191 0 0 chr13 53826397 53826512 -65918386 + FLAM_A SINE Alu 1 115 -18 22 43 0 21 chr13 53826512 53826540 -65918358 + AT_rich Low_complexity Low_complexity 18 46 0 237 342 53 9 chr13 53826718 53826832 -65918066 - MIR SINE MIR -21 241 123 575 62 12 0 chr13 53826935 53827015 -65917883 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 10962 148 63 32 chr13 53827118 53827958 -65916940 - Tigger1 DNA MER2_type 0 2418 1605 2293 172 39 0 chr13 53827958 53828370 -65916528 - MSTA LTR MaLR 0 428 1 10962 148 63 32 chr13 53828370 53828464 -65916434 - Tigger1 DNA MER2_type -813 1605 1515 192 40 0 0 chr13 53828464 53828489 -65916409 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2029 127 3 7 chr13 53828491 53828783 -65916115 - AluSx SINE Alu -21 291 1 10962 148 63 32 chr13 53828783 53829726 -65915172 - Tigger1 DNA MER2_type -903 1515 450 760 201 11 26 chr13 53829726 53829915 -65914983 + MER30B DNA MER1_type 1 186 -4 10962 148 63 32 chr13 53829915 53830380 -65914518 - Tigger1 DNA MER2_type -1968 450 1 223 371 21 0 chr13 53830520 53830617 -65914281 - L2 LINE L2 -36 3236 3138 1886 126 3 120 chr13 53830809 53831191 -65913707 + MER1B DNA MER1_type 1 337 0 242 303 47 43 chr13 53832336 53832613 -65912285 + L1ME LINE L1 5353 5630 -540 2048 152 3 0 chr13 53832796 53833106 -65911792 - AluSq SINE Alu 0 313 3 316 219 0 109 chr13 53833162 53833290 -65911608 - L1MC4 LINE L1 -1339 6703 6590 248 406 47 8 chr13 53833351 53833479 -65911419 - L2 LINE L2 -23 3249 3117 2560 52 0 10 chr13 53834192 53834501 -65910397 - AluY SINE Alu -5 306 1 36 40 0 0 chr13 53834732 53834782 -65910116 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr13 53836011 53836036 -65908862 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr13 53837311 53837340 -65907558 + AT_rich Low_complexity Low_complexity 1 29 0 257 346 92 0 chr13 53837795 53837925 -65906973 - MIR SINE MIR -72 190 49 3861 121 114 138 chr13 53837938 53839472 -65905426 + pTR5 LTR ERV1 743 2438 0 1441 170 107 71 chr13 53839657 53840275 -65904623 + LTR48 LTR ERV1 18 640 -4 2815 171 48 46 chr13 53840302 53840993 -65903905 + LTR8A LTR ERV1 34 725 -2 4295 138 40 58 chr13 53840993 53841834 -65903064 + LTR1B LTR ERV1 1 826 0 1208 274 103 8 chr13 53841842 53842328 -65902570 + MLT1E LTR MaLR 62 593 0 216 67 0 0 chr13 53844264 53844294 -65900604 + (TG)n Simple_repeat Simple_repeat 1 30 0 439 354 42 0 chr13 53845199 53845411 -65899487 + MIR SINE MIR 10 230 -32 2114 130 0 0 chr13 53845429 53845721 -65899177 + AluSx SINE Alu 6 297 -15 1399 64 223 0 chr13 53846554 53846787 -65898111 + LTR12 LTR ERV1 1 285 -429 275 253 11 0 chr13 53846787 53846878 -65898020 + LTR30 LTR ERV1 552 643 -79 1473 128 35 0 chr13 53846878 53847105 -65897793 + LTR12 LTR ERV1 480 714 0 2137 148 117 14 chr13 53847598 53848016 -65896882 + LOR1b LTR ERV1 1 461 0 1781 174 57 0 chr13 53848016 53848367 -65896531 + LOR1b-int LTR ERV1 1 371 -7749 6039 127 48 23 chr13 53848377 53849501 -65895397 + LTR12-int LTR ERV1 203 1354 -6766 16682 136 39 32 chr13 53849539 53852867 -65892031 + LTR12-int LTR ERV1 1439 4789 -3331 731 245 25 0 chr13 53852873 53853036 -65891862 - MER52A LTR ERV1 -2 1753 1587 * 1357 208 45 45 chr13 53853020 53853572 -65891326 - MER52A LTR ERV1 -396 1359 663 18432 109 10 8 chr13 53853577 53856325 -65888573 - MER52A-int LTR ERV1 0 7091 4340 557 102 20 20 chr13 53856325 53856423 -65888475 + MER4A LTR ERV1 1 98 -566 1690 118 11 78 chr13 53856423 53856793 -65888105 + MER4A LTR ERV1 261 664 0 18335 131 19 20 chr13 53856794 53860270 -65884628 - MER52A-int LTR ERV1 -2749 4342 739 2138 114 0 43 chr13 53860270 53860595 -65884303 + AluY SINE Alu 1 311 0 18335 131 19 20 chr13 53860595 53861334 -65883564 - MER52A-int LTR ERV1 -6352 739 1 1807 226 27 57 chr13 53861334 53861883 -65883015 - MER52A LTR ERV1 0 1755 641 1310 157 31 66 chr13 53861887 53862174 -65882724 + LTR12 LTR ERV1 1 277 -437 252 243 14 0 chr13 53862174 53862244 -65882654 + LTR30 LTR ERV1 544 614 -108 754 143 45 60 chr13 53862244 53862411 -65882487 + LTR12 LTR ERV1 299 483 -231 * 8094 134 4 26 chr13 53862395 53863773 -65881125 + HERV9 LTR ERV1 55 1401 -6998 * 23432 99 5 4 chr13 53863770 53867155 -65877743 + HERV9 LTR ERV1 1568 4954 -3445 1695 136 42 62 chr13 53867148 53867913 -65876985 + HERV17 LTR ERV1 761 1740 -5156 * 4839 129 4 8 chr13 53867911 53868688 -65876210 + HERV17 LTR ERV1 7626 8399 0 1387 132 108 4 chr13 53868688 53868939 -65875959 + LTR12 LTR ERV1 1 277 -437 301 169 28 28 chr13 53868939 53869010 -65875888 + LTR30 LTR ERV1 544 614 -108 762 163 23 0 chr13 53869010 53869139 -65875759 + LTR12 LTR ERV1 349 480 -234 1296 199 13 63 chr13 53869475 53869926 -65874972 - MER52A LTR ERV1 -523 1232 663 3429 117 42 17 chr13 53869926 53870565 -65874333 + LOR1-int LTR ERV1 4780 5434 -2686 249 133 142 17 chr13 53870909 53871029 -65873869 + (TTAAA)n Simple_repeat Simple_repeat 2 136 0 1663 153 42 88 chr13 53871746 53872099 -65872799 - MER1B DNA MER1_type 0 337 1 1521 159 85 15 chr13 53872497 53872768 -65872130 + AluJb SINE Alu 1 290 -22 5217 160 31 44 chr13 53873675 53875583 -65869315 - L1MA5A LINE L1 -17 6280 4368 20356 105 14 2 chr13 53875585 53879449 -65865449 - L1PA7 LINE L1 0 6469 2569 4071 101 8 5 chr13 53879449 53880074 -65864824 - L1PA7 LINE L1 -4829 1632 1006 1954 138 0 21 chr13 53880057 53880382 -65864516 - L1PA7 LINE L1 -6136 325 8 * 5827 206 19 26 chr13 53880392 53881429 -65863469 - L1MA5A LINE L1 -1769 4377 3353 2142 97 7 13 chr13 53881429 53881729 -65863169 - AluY SINE Alu -13 298 1 5827 206 19 26 chr13 53881729 53882160 -65862738 - L1MA5A LINE L1 -2793 3353 2920 576 165 0 0 chr13 53882177 53882262 -65862636 - FLAM SINE Alu -21 122 38 2228 113 7 0 chr13 53882444 53882754 -65862144 - AluSx SINE Alu 0 312 1 8626 228 51 32 chr13 53883651 53884156 -65860742 - L1MA4A LINE L1 -8 6295 5801 1907 62 62 0 chr13 53884156 53884413 -65860485 - AluY SINE Alu 0 311 39 8626 228 51 32 chr13 53884413 53887351 -65857547 - L1MA4A LINE L1 -502 5801 2799 1627 251 59 60 chr13 53887351 53888331 -65856567 + L1MA4A LINE L1 2091 3064 -3318 2160 164 6 3 chr13 53888381 53888741 -65856157 + THE1B LTR MaLR 2 362 -2 8144 118 175 0 chr13 53888743 53890087 -65854811 + THE1B-int LTR MaLR 1 1579 -1 2184 156 6 8 chr13 53890088 53890453 -65854445 + THE1B LTR MaLR 1 364 0 180 176 0 0 chr13 53890489 53890523 -65854375 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 298 277 0 0 chr13 53890555 53890638 -65854260 + (TA)n Simple_repeat Simple_repeat 2 84 0 1206 317 127 27 chr13 53890642 53891258 -65853640 + L2 LINE L2 1295 1985 -1329 2004 173 16 19 chr13 53891258 53891634 -65853264 + THE1C LTR MaLR 1 375 0 1206 317 127 27 chr13 53891634 53891689 -65853209 + L2 LINE L2 1985 2033 -1281 183 229 0 0 chr13 53891721 53891782 -65853116 + T-rich Low_complexity Low_complexity 1 61 0 807 243 36 8 chr13 53892024 53892385 -65852513 - MLT2B1 LTR ERVL -60 460 2 359 322 23 35 chr13 53892388 53892562 -65852336 + L2 LINE L2 3137 3308 -5 25 0 6 0 chr13 53893545 53893599 -65851299 + AT_rich Low_complexity Low_complexity 1 25 0 381 358 147 29 chr13 53893915 53894751 -65850147 - L2 LINE L2 -656 2658 1724 36 77 0 0 chr13 53895720 53895798 -65849100 + AT_rich Low_complexity Low_complexity 1 78 0 410 318 84 28 chr13 53896705 53897098 -65847800 - L1M4 LINE L1 -1383 4763 4349 627 286 66 33 chr13 53897133 53897374 -65847524 + MIR SINE MIR 5 253 -9 21 0 0 0 chr13 53897430 53897451 -65847447 + AT_rich Low_complexity Low_complexity 1 21 0 189 171 0 0 chr13 53897632 53897667 -65847231 + CT-rich Low_complexity Low_complexity 1 35 0 605 197 8 41 chr13 53897669 53897791 -65847107 - FLAM_C SINE Alu -25 118 1 3547 145 133 8 chr13 53898000 53899356 -65845542 - pTR5 LTR ERV1 0 2606 1524 315 364 12 19 chr13 53899430 53899592 -65845306 - LTR33 LTR ERVL -309 212 52 23 33 0 0 chr13 53899976 53900006 -65844892 + AT_rich Low_complexity Low_complexity 1 30 0 231 356 127 13 chr13 53900358 53900594 -65844304 + L2 LINE L2 2443 2705 -609 2144 168 6 11 chr13 53900855 53901219 -65843679 + THE1C LTR MaLR 14 375 0 1497 189 14 0 chr13 53901371 53901668 -65843230 - L1P LINE L1 -2367 3779 3479 2042 121 26 71 chr13 53901677 53901989 -65842909 + L1PA15 LINE L1 5782 6106 -59 279 0 0 0 chr13 53901989 53902020 -65842878 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2042 121 26 71 chr13 53902020 53902038 -65842860 + L1PA15 LINE L1 6106 6123 -42 7731 16 4 0 chr13 53902038 53903328 -65841570 - L1PA3 LINE L1 -4 6151 4860 2042 121 26 71 chr13 53903328 53903376 -65841522 + L1PA15 LINE L1 6123 6144 -21 335 303 0 0 chr13 53903399 53903488 -65841410 + L1MC4 LINE L1 6615 6703 -1339 23 33 0 0 chr13 53903608 53903638 -65841260 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr13 53904411 53904437 -65840461 + AT_rich Low_complexity Low_complexity 1 26 0 2615 192 26 26 chr13 53905633 53906237 -65838661 + L1MA10 LINE L1 5731 6334 0 21 71 0 0 chr13 53906693 53906735 -65838163 + AT_rich Low_complexity Low_complexity 1 42 0 488 307 73 28 chr13 53907674 53908109 -65836789 - L1MC/D LINE L1 -722 5429 5366 225 322 0 0 chr13 53909503 53909562 -65835336 - L2 LINE L2 -7 3306 3248 21 0 0 0 chr13 53909608 53909629 -65835269 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 53910050 53910071 -65834827 + AT_rich Low_complexity Low_complexity 1 21 0 278 333 44 8 chr13 53910861 53911113 -65833785 + L1ME1 LINE L1 4399 4659 -1487 997 251 80 23 chr13 53911709 53912147 -65832751 - LTR37B LTR ERV1 -2 466 4 24 53 0 0 chr13 53912480 53912518 -65832380 + AT_rich Low_complexity Low_complexity 1 38 0 1064 207 11 19 chr13 53912600 53912866 -65832032 + L1MD3 LINE L1 7731 7994 -1 27 29 0 0 chr13 53914346 53914380 -65830518 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr13 53916756 53916782 -65828116 + AT_rich Low_complexity Low_complexity 1 26 0 447 328 28 17 chr13 53918751 53918928 -65825970 + LTR33 LTR ERVL 4 182 -339 3396 195 27 1 chr13 53918939 53919648 -65825250 - L1MC1 LINE L1 0 6333 5607 192 269 173 19 chr13 53920128 53920232 -65824666 - MIR SINE MIR -19 243 124 195 69 0 0 chr13 53922419 53922448 -65822450 + (TA)n Simple_repeat Simple_repeat 1 29 0 1196 195 103 29 chr13 53922922 53923194 -65821704 + AluJo SINE Alu 2 293 -9 538 355 93 49 chr13 53923327 53923782 -65821116 - L2 LINE L2 0 3313 2880 2128 126 0 0 chr13 53923782 53924083 -65820815 + AluY SINE Alu 1 301 -10 538 355 93 49 chr13 53924083 53924841 -65820057 - L2 LINE L2 -433 2880 1947 281 280 43 0 chr13 53925427 53925520 -65819378 + L1ME1 LINE L1 5134 5230 -916 203 270 11 11 chr13 53925538 53925627 -65819271 + (TA)n Simple_repeat Simple_repeat 1 89 0 2655 242 83 26 chr13 53925643 53925688 -65819210 + L1ME1 LINE L1 5267 5308 -858 2306 79 0 13 chr13 53925688 53925991 -65818907 + AluY SINE Alu 1 299 -12 2655 242 83 26 chr13 53925991 53926041 -65818857 + L1ME1 LINE L1 5308 5354 -812 518 244 0 22 chr13 53926041 53926176 -65818722 - FLAM_C SINE Alu 0 133 2 2655 242 83 26 chr13 53926176 53926289 -65818609 + L1ME1 LINE L1 5354 5459 -707 450 0 0 0 chr13 53926289 53926339 -65818559 + (CA)n Simple_repeat Simple_repeat 1 50 0 2655 242 83 26 chr13 53926339 53926975 -65817923 + L1ME1 LINE L1 5459 6161 -5 321 258 40 24 chr13 53927213 53927337 -65817561 - MLT1J LTR MaLR -335 176 51 1087 214 74 19 chr13 53927344 53927615 -65817283 + AluJo SINE Alu 25 310 -2 213 196 0 0 chr13 53927657 53927713 -65817185 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 205 171 0 0 chr13 53928529 53928570 -65816328 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 1994 77 70 14 chr13 53928574 53928861 -65816037 - AluY SINE Alu -8 303 1 1892 138 67 14 chr13 53929039 53929395 -65815503 + THE1C LTR MaLR 1 375 0 243 214 10 20 chr13 53930397 53930495 -65814403 + CT-rich Low_complexity Low_complexity 1 97 0 216 242 81 16 chr13 53930514 53930576 -65814322 + MIR SINE MIR 184 249 -13 232 283 0 0 chr13 53931289 53931342 -65813556 + (CA)n Simple_repeat Simple_repeat 2 54 0 316 337 48 27 chr13 53931894 53932081 -65812817 - MLT1J LTR MaLR -236 275 85 4983 59 3 0 chr13 53933246 53933872 -65811026 - L1PA8 LINE L1 -19 6153 5526 2070 65 0 0 chr13 53933872 53934235 -65810663 + L1PA8 LINE L1 5164 5526 -605 478 325 47 71 chr13 53934518 53934985 -65809913 - MLT1J LTR MaLR -41 470 15 296 148 16 0 chr13 53935917 53935978 -65808920 + (TA)n Simple_repeat Simple_repeat 1 62 0 7121 169 146 41 chr13 53936051 53937639 -65807259 - MER52A LTR ERV1 0 1755 1 708 218 0 8 chr13 53937938 53938071 -65806827 - FLAM_C SINE Alu 0 133 2 32 57 0 0 chr13 53938207 53938260 -65806638 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr13 53938675 53938696 -65806202 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 53938953 53938997 -65805901 + AT_rich Low_complexity Low_complexity 1 44 0 1974 167 115 14 chr13 53939779 53940198 -65804700 - LOR1b LTR ERV1 0 461 1 540 165 0 0 chr13 53940198 53940289 -65804609 - LOR1b-int LTR ERV1 0 8120 8030 * 1697 144 30 8 chr13 53940288 53940643 -65804255 - LOR1-int LTR ERV1 -1086 5941 5369 27 29 0 0 chr13 53941068 53941102 -65803796 + AT_rich Low_complexity Low_complexity 1 34 0 1142 207 38 54 chr13 53941158 53941419 -65803479 - ERVL LTR ERVL -3505 2259 2003 2340 163 34 2 chr13 53941426 53941844 -65803054 - MSTB1 LTR MaLR -1 431 1 3829 185 56 17 chr13 53941844 53942590 -65802308 - MSTB1-int LTR MaLR 0 1651 877 1191 258 95 14 chr13 53942591 53943366 -65801532 - ERVL LTR ERVL -4490 1164 294 349 198 18 0 chr13 53943413 53943524 -65801374 + (TA)n Simple_repeat Simple_repeat 1 113 0 330 288 108 7 chr13 53943582 53943721 -65801177 - ERVL LTR ERVL -5500 154 2 675 237 193 55 chr13 53943730 53944165 -65800733 - MLT1D LTR MaLR -8 497 3 189 171 0 0 chr13 53944730 53944765 -65800133 + (TA)n Simple_repeat Simple_repeat 2 36 0 29 47 0 0 chr13 53944983 53945026 -65799872 + AT_rich Low_complexity Low_complexity 1 43 0 1198 230 129 59 chr13 53945202 53945658 -65799240 + MLT1D LTR MaLR 18 505 0 268 192 48 106 chr13 53945804 53945908 -65798990 + MIR SINE MIR 97 194 -68 493 310 75 5 chr13 53947045 53947258 -65797640 - MIR SINE MIR -8 254 27 3148 143 103 48 chr13 53949752 53950845 -65794053 - pTR5 LTR ERV1 -156 1481 6 382 205 0 26 chr13 53950986 53951064 -65793834 + MLT1D LTR MaLR 1 76 -429 243 269 0 0 chr13 53951835 53951902 -65792996 + (TA)n Simple_repeat Simple_repeat 1 67 0 26 30 0 0 chr13 53952155 53952188 -65792710 + AT_rich Low_complexity Low_complexity 1 33 0 825 305 24 4 chr13 53952972 53953218 -65791680 + ERVL LTR ERVL 3195 3445 -2319 192 77 0 0 chr13 53953233 53953259 -65791639 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 470 280 53 34 chr13 53953629 53953836 -65791062 + LTR33 LTR ERVL 311 521 0 351 78 0 0 chr13 53955346 53955397 -65789501 + (TC)n Simple_repeat Simple_repeat 2 52 0 24 32 0 0 chr13 53955909 53955940 -65788958 + AT_rich Low_complexity Low_complexity 1 31 0 237 360 25 25 chr13 53955995 53956089 -65788809 + MIR SINE MIR 94 190 -72 558 88 0 0 chr13 53956089 53956169 -65788729 - MADE1 DNA Mariner 0 80 1 237 360 25 25 chr13 53956169 53956235 -65788663 + MIR SINE MIR 189 254 -8 1907 220 43 31 chr13 53956365 53956852 -65788046 - MLT1D LTR MaLR -7 498 6 334 313 46 0 chr13 53957244 53957465 -65787433 - L1ME3A LINE L1 -304 5817 5627 432 287 124 13 chr13 53957484 53957788 -65787110 - L1ME3A LINE L1 -646 5518 5188 532 366 91 40 chr13 53958113 53959115 -65785783 - L2 LINE L2 -1080 2234 1098 2847 7 0 0 chr13 53960210 53960517 -65784381 + AluYa5 SINE Alu 1 307 -4 7037 55 9 0 chr13 53961476 53962864 -65782034 - L1PA8 LINE L1 -7 6165 4768 779 143 119 0 chr13 53962864 53962990 -65781908 + L1P3 LINE L1 201 341 -6120 293 349 39 23 chr13 53965104 53965233 -65779665 - MIR SINE MIR -58 150 20 229 302 142 35 chr13 53965404 53965573 -65779325 - L2 LINE L2 -24 3289 3103 511 341 39 5 chr13 53965636 53965844 -65779054 - L2 LINE L2 -424 2890 2676 232 297 0 0 chr13 53965959 53966023 -65778875 + (TAG)n Simple_repeat Simple_repeat 1 64 0 201 346 118 28 chr13 53966305 53966559 -65778339 + L2 LINE L2 3005 3281 -32 301 58 39 0 chr13 53968144 53968196 -65776702 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2439 98 0 0 chr13 53968677 53968984 -65775914 - AluSx SINE Alu -5 307 1 13367 171 22 9 chr13 53969223 53971479 -65773419 + L1M1 LINE L1 17 2301 -5264 744 135 0 68 chr13 53971484 53971617 -65773281 + THE1B LTR MaLR 241 364 0 2940 104 16 16 chr13 53971620 53972110 -65772788 + L1M1 LINE L1 2870 3359 -4206 5687 115 173 4 chr13 53972111 53973220 -65771678 + L1PA7 LINE L1 1 1677 -4784 18319 107 8 2 chr13 53973220 53976740 -65768158 + L1PA7 LINE L1 2934 6463 -6 1576 194 41 9 chr13 53976754 53977436 -65767462 + L1M1 LINE L1 3347 4082 -3483 327 302 74 45 chr13 53977538 53977740 -65767158 - HAL1 LINE L1 -1026 1481 1274 248 278 68 26 chr13 53977777 53977968 -65766930 - HAL1 LINE L1 -1329 1178 980 9794 195 25 6 chr13 53978113 53981119 -65763779 + L1PA14 LINE L1 3091 6157 -4 35 41 0 0 chr13 53981120 53981169 -65763729 + AT_rich Low_complexity Low_complexity 1 49 0 1017 253 113 38 chr13 53981980 53982466 -65762432 - LTR28 LTR ERV1 -137 499 1 250 317 154 82 chr13 53982581 53982997 -65761901 - L2 LINE L2 -1 3271 2826 568 205 116 0 chr13 53983869 53983981 -65760917 + FLAM_C SINE Alu 1 125 -18 278 306 53 52 chr13 53984378 53984530 -65760368 - MIR SINE MIR -42 166 11 1631 172 7 21 chr13 53985306 53985591 -65759307 - AluJb SINE Alu -31 281 1 21 0 0 0 chr13 53987082 53987103 -65757795 + AT_rich Low_complexity Low_complexity 1 21 0 741 71 106 0 chr13 53987125 53987238 -65757660 - LTR12 LTR ERV1 0 714 590 4435 95 33 158 chr13 53987238 53988181 -65756717 - LTR12 LTR ERV1 0 826 2 393 245 12 25 chr13 53988261 53988424 -65756474 - pTR5 LTR ERV1 -1410 1028 868 5485 161 71 42 chr13 53988694 53989980 -65754918 - pTR5 LTR ERV1 -373 2065 743 6847 163 14 9 chr13 53989980 53992418 -65752480 + L1MA3 LINE L1 3856 6305 0 30 100 0 0 chr13 53992431 53992531 -65752367 + AT_rich Low_complexity Low_complexity 1 100 0 1010 193 124 69 chr13 53992570 53992948 -65751950 + MER57A LTR ERV1 3 401 -2 2285 105 0 13 chr13 53993608 53993940 -65750958 - AluSx SINE Alu 0 312 1 1708 165 23 3 chr13 53994257 53994618 -65750280 - MER7A DNA MER2_type 0 346 1 385 300 31 38 chr13 53995523 53995683 -65749215 + MIR SINE MIR 30 188 -74 270 0 0 0 chr13 53995683 53995713 -65749185 + (TG)n Simple_repeat Simple_repeat 1 30 0 991 217 90 98 chr13 53996076 53996640 -65748258 - MLT1E1 LTR MaLR -8 585 1 1090 228 92 22 chr13 54047906 54048265 -65696633 - L1ME1 LINE L1 -4 6162 5779 404 282 78 33 chr13 54048392 54048637 -65696261 - L1ME1 LINE L1 -409 5712 5457 21 57 0 0 chr13 54048989 54049024 -65695874 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr13 54049283 54049309 -65695589 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr13 54049654 54049675 -65695223 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 54049961 54049991 -65694907 + AT_rich Low_complexity Low_complexity 1 30 0 818 317 57 21 chr13 54050142 54050669 -65694229 + L1ME3A LINE L1 5398 5943 -227 2439 55 0 26 chr13 54050759 54051069 -65693829 - AluY SINE Alu -9 302 1 323 273 37 64 chr13 54051190 54051377 -65693521 - L1ME LINE L1 -5226 844 663 21 57 0 0 chr13 54051383 54051418 -65693480 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 54052093 54052114 -65692784 + AT_rich Low_complexity Low_complexity 1 21 0 256 247 94 0 chr13 54052124 54052209 -65692689 - L1ME1 LINE L1 -750 5420 5328 492 280 18 0 chr13 54052336 54052504 -65692394 - L1ME1 LINE L1 -1040 5106 4936 25 51 0 0 chr13 54052595 54052634 -65692264 + AT_rich Low_complexity Low_complexity 1 39 0 1238 147 135 36 chr13 54052634 54052886 -65692012 - AluJo SINE Alu -30 282 6 5138 61 10 15 chr13 54053100 54054316 -65690582 - L1PA6 LINE L1 -228 5926 4720 303 71 0 0 chr13 54054676 54054718 -65690180 + (ATG)n Simple_repeat Simple_repeat 2 43 0 23 33 0 0 chr13 54055272 54055302 -65689596 + AT_rich Low_complexity Low_complexity 1 30 0 387 330 138 21 chr13 54055594 54055782 -65689116 - MIR SINE MIR -1 261 52 1765 65 5 0 chr13 54055812 54056029 -65688869 - AluY SINE Alu -7 304 87 371 91 0 0 chr13 54056212 54056267 -65688631 - L1MA3 LINE L1 -10 6295 6241 258 217 33 0 chr13 54056314 54056374 -65688524 + CT-rich Low_complexity Low_complexity 3 64 0 2364 47 3 7 chr13 54057770 54058070 -65686828 - AluY SINE Alu -12 299 1 234 0 0 0 chr13 54058718 54058744 -65686154 + (CA)n Simple_repeat Simple_repeat 2 27 0 24 67 0 0 chr13 54060426 54060471 -65684427 + AT_rich Low_complexity Low_complexity 1 45 0 1222 200 126 15 chr13 54060806 54061076 -65683822 + AluJb SINE Alu 1 300 -2 581 301 152 41 chr13 54061493 54061935 -65682963 + L2 LINE L2 2291 2781 -533 293 82 20 0 chr13 54061949 54061998 -65682900 + (TA)n Simple_repeat Simple_repeat 1 50 0 32 26 0 0 chr13 54062176 54062215 -65682683 + AT_rich Low_complexity Low_complexity 1 39 0 486 282 27 16 chr13 54064158 54064323 -65680575 - MLT1J LTR MaLR -163 287 109 213 39 0 0 chr13 54065147 54065173 -65679725 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chr13 54065645 54065668 -65679230 + (A)n Simple_repeat Simple_repeat 1 23 0 4175 165 18 11 chr13 54066020 54067097 -65677801 - L1MA4 LINE L1 -320 5980 4895 854 293 44 33 chr13 54067112 54067416 -65677482 + MER74B LTR ERVL 183 493 -129 2012 128 174 8 chr13 54067416 54067783 -65677115 + MSTA LTR MaLR 1 428 0 854 293 44 33 chr13 54067783 54067840 -65677058 + MER74B LTR ERVL 493 548 -74 2215 211 73 6 chr13 54067887 54068436 -65676462 + L1MB7 LINE L1 5589 6174 -10 2059 130 3 3 chr13 54071223 54071524 -65673374 - AluSg SINE Alu -9 301 1 1296 237 25 80 chr13 54072339 54072778 -65672120 + MLT1C LTR MaLR 53 467 0 1095 304 137 24 chr13 54072850 54073527 -65671371 + L2 LINE L2 1505 2258 -1056 1895 100 89 4 chr13 54073560 54073829 -65671069 + AluSx SINE Alu 1 292 -20 380 302 202 26 chr13 54074129 54074480 -65670418 + MLT1J LTR MaLR 98 510 -1 1979 127 0 36 chr13 54074674 54074981 -65669917 + AluSq SINE Alu 1 296 -17 3167 157 26 0 chr13 54075276 54075816 -65669082 + MER41C LTR ERV1 1 554 0 420 255 68 52 chr13 54076117 54076309 -65668589 - LTR68 LTR ERV1 -309 431 237 359 294 27 14 chr13 54076338 54076484 -65668414 - LTR68 LTR ERV1 -590 150 3 364 282 29 109 chr13 54077242 54077416 -65667482 + MLT1J LTR MaLR 93 252 -259 301 333 0 0 chr13 54077603 54077693 -65667205 + L1MC4 LINE L1 6614 6703 -1339 * 342 200 7 44 chr13 54077674 54077787 -65667111 + L1MC4 LINE L1 1996 6983 -1339 194 346 73 29 chr13 54078032 54078168 -65666730 - L2 LINE L2 -734 2580 2439 3547 204 81 28 chr13 54078258 54079078 -65665820 - MER21B LTR ERV1 0 863 1 2048 126 102 42 chr13 54079149 54079553 -65665345 - LTR21A LTR ERV1 -16 489 62 4849 203 72 73 chr13 54079555 54080226 -65664672 - HERVFH21 LTR ERV1 0 6529 5859 6126 78 17 4 chr13 54080226 54081041 -65663857 + LTR12 LTR ERV1 1 826 0 4849 203 72 73 chr13 54081041 54083374 -65661524 - HERVFH21 LTR ERV1 -670 5859 3520 4893 101 8 10 chr13 54083374 54084097 -65660801 - LTR30 LTR ERV1 0 722 1 4849 203 72 73 chr13 54084097 54084544 -65660354 - HERVFH21 LTR ERV1 -3009 3520 3074 1360 76 0 0 chr13 54084541 54084726 -65660172 - HERVFH21 LTR ERV1 -4238 2291 2107 * 718 187 80 0 chr13 54084727 54084877 -65660021 - pTR5 LTR ERV1 -862 1576 1415 2189 117 0 7 chr13 54084900 54085208 -65659690 - AluSq SINE Alu -7 306 1 225 372 41 8 chr13 54085236 54085357 -65659541 + L2 LINE L2 2643 2767 -547 3219 151 27 7 chr13 54085742 54086298 -65658600 - Tigger3(Golem) DNA MER2_type 0 3029 2463 207 0 0 0 chr13 54086817 54086840 -65658058 + (A)n Simple_repeat Simple_repeat 1 23 0 1353 227 153 5 chr13 54087732 54088164 -65656734 + LTR54B LTR ERV1 1 496 -2 2055 112 0 0 chr13 54088520 54088820 -65656078 - AluSx SINE Alu 0 309 10 287 254 55 41 chr13 54088834 54088993 -65655905 + L1M4b LINE L1 2 472 -6383 189 74 0 0 chr13 54089050 54089077 -65655821 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 308 293 67 83 chr13 54089409 54089455 -65655443 + L1M4b LINE L1 1016 1061 -5794 1979 130 81 26 chr13 54089455 54089800 -65655098 + THE1B LTR MaLR 1 364 0 308 293 67 83 chr13 54089800 54090053 -65654845 + L1M4b LINE L1 1061 1310 -5545 17746 30 8 0 chr13 54091106 54093274 -65651624 + L1P LINE L1 2401 4586 -1560 1977 138 34 42 chr13 54093333 54093711 -65651187 + THE1C LTR MaLR 1 375 0 240 119 119 0 chr13 54094522 54094581 -65650317 + L1ME4a LINE L1 6055 6120 -1 319 344 52 68 chr13 54095436 54095987 -65648911 - L2 LINE L2 -224 3048 2438 647 231 0 0 chr13 54095987 54096117 -65648781 + FLAM_A SINE Alu 1 130 -3 319 344 52 68 chr13 54096117 54096404 -65648494 - L2 LINE L2 -834 2438 2148 204 286 57 0 chr13 54096660 54096730 -65648168 - L2 LINE L2 -2556 758 685 223 279 198 0 chr13 54096894 54096980 -65647918 + L2 LINE L2 3191 3293 -20 463 322 110 9 chr13 54097617 54097844 -65647054 + MIR SINE MIR 13 262 0 2172 131 0 6 chr13 54098137 54098449 -65646449 - AluSg SINE Alu 0 310 1 326 275 22 51 chr13 54098612 54098750 -65646148 - L3 LINE CR1 -773 804 671 194 157 0 20 chr13 54099031 54099082 -65645816 + (TA)n Simple_repeat Simple_repeat 1 50 0 510 314 54 27 chr13 54099201 54099424 -65645474 + MIR SINE MIR 26 254 -8 21 57 0 0 chr13 54099585 54099620 -65645278 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 54100460 54100481 -65644417 + AT_rich Low_complexity Low_complexity 1 21 0 334 138 86 5 chr13 54101155 54101236 -65643662 + MSTD LTR MaLR 1 69 -327 22 0 0 0 chr13 54101400 54101422 -65643476 + AT_rich Low_complexity Low_complexity 1 22 0 345 240 0 20 chr13 54101555 54101655 -65643243 + MER103 DNA DNA 4 101 -65 298 297 55 28 chr13 54101820 54101965 -65642933 + MIR SINE MIR 74 222 -40 21 0 0 0 chr13 54102154 54102175 -65642723 + AT_rich Low_complexity Low_complexity 1 21 0 1387 214 0 31 chr13 54102829 54103123 -65641775 + AluJo SINE Alu 1 285 -27 1108 240 0 0 chr13 54103218 54103426 -65641472 + Tigger5 DNA MER2_type 2 209 -2114 1915 265 31 77 chr13 54103430 54104419 -65640479 - L1MEc LINE L1 -5410 986 43 1955 110 3 53 chr13 54104584 54104903 -65639995 - AluY SINE Alu -8 303 1 190 319 14 42 chr13 54105076 54105148 -65639750 + L2 LINE L2 3191 3260 -12 22 0 0 0 chr13 54105775 54105797 -65639101 + AT_rich Low_complexity Low_complexity 1 22 0 287 336 95 28 chr13 54106824 54107035 -65637863 + MLT1J LTR MaLR 263 487 -24 1679 175 7 13 chr13 54107114 54107417 -65637481 + AluJo SINE Alu 2 302 -10 236 318 0 34 chr13 54108248 54108336 -65636562 + MIR3 SINE MIR 90 174 -34 220 196 0 36 chr13 54109340 54109396 -65635502 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr13 54109757 54109778 -65635120 + AT_rich Low_complexity Low_complexity 1 21 0 298 316 110 0 chr13 54109780 54109916 -65634982 + MIR SINE MIR 56 206 -56 1256 181 44 38 chr13 54111337 54111598 -65633300 - MER33 DNA MER1_type -2261 324 59 2837 75 26 61 chr13 54111598 54112012 -65632886 + MLT2A1 LTR ERVL 5 403 -41 524 61 0 37 chr13 54112012 54112094 -65632804 + (TA)n Simple_repeat Simple_repeat 2 80 0 2837 75 26 61 chr13 54112094 54112135 -65632763 + MLT2A1 LTR ERVL 403 444 0 1256 181 44 38 chr13 54112135 54112188 -65632710 - MER33 DNA MER1_type -2526 59 8 672 186 0 0 chr13 54112410 54112539 -65632359 - FLAM_A SINE Alu 0 133 5 289 206 226 10 chr13 54113030 54113132 -65631766 + Charlie5 DNA MER1_type 1 124 -2488 * 1278 195 118 39 chr13 54113110 54113499 -65631399 + Charlie5 DNA MER1_type 2200 2619 0 1101 216 88 34 chr13 54114263 54114651 -65630247 + Charlie1 DNA MER1_type 2345 2753 -8 692 236 40 40 chr13 54114885 54114950 -65629948 + LTR16B LTR ERVL 234 298 -166 2292 59 10 0 chr13 54114950 54115238 -65629660 - AluY SINE Alu -20 291 1 692 236 40 40 chr13 54115238 54115397 -65629501 + LTR16B LTR ERVL 297 458 -6 2085 136 0 0 chr13 54115449 54115743 -65629155 - AluSx SINE Alu -16 296 3 23 0 0 0 chr13 54115952 54115975 -65628923 + AT_rich Low_complexity Low_complexity 1 23 0 1084 79 0 7 chr13 54116594 54116733 -65628165 + AluSq/x SINE Alu 1 138 -175 1633 107 8 173 chr13 54117216 54117741 -65627157 + LTR21B LTR ERV1 1 438 0 408 301 97 40 chr13 54118161 54118553 -65626345 + L1ME LINE L1 5348 5760 -361 185 376 127 29 chr13 54118948 54119153 -65625745 + L2 LINE L2 2733 2957 -357 595 189 41 16 chr13 54119501 54119623 -65625275 - AluJb SINE Alu -179 133 9 326 306 89 12 chr13 54121115 54121373 -65623525 + L1ME LINE L1 5483 5760 -361 595 189 41 16 chr13 54122321 54122443 -65622455 - AluJb SINE Alu -179 133 9 999 192 72 110 chr13 54122634 54123054 -65621844 + MER66A LTR ERV1 97 426 -52 1159 111 5 26 chr13 54125998 54126187 -65618711 + MER30B DNA MER1_type 6 190 0 279 133 0 0 chr13 54126972 54127017 -65617881 + (CA)n Simple_repeat Simple_repeat 2 46 0 23 92 0 0 chr13 54127147 54127212 -65617686 + AT_rich Low_complexity Low_complexity 1 65 0 31 36 0 18 chr13 54127279 54127315 -65617583 + AT_rich Low_complexity Low_complexity 1 37 -18 1599 188 25 7 chr13 54127315 54127592 -65617306 - AluJo SINE Alu -30 282 1 31 36 0 18 chr13 54127592 54127611 -65617287 + AT_rich Low_complexity Low_complexity 37 55 0 2010 160 0 0 chr13 54128093 54128399 -65616499 + AluJb SINE Alu 5 310 -2 29 70 0 0 chr13 54128828 54128885 -65616013 + AT_rich Low_complexity Low_complexity 1 57 0 304 143 0 0 chr13 54129129 54129178 -65615720 + U5 snRNA snRNA 1 49 -67 282 237 64 133 chr13 54129225 54129398 -65615500 - MLT1H LTR MaLR 0 549 389 1134 305 77 44 chr13 54129804 54129890 -65615008 + L2 LINE L2 37 119 -3195 1535 254 109 8 chr13 54129890 54130358 -65614540 + LTR40a LTR ERVL 3 517 -2 1134 305 77 44 chr13 54130358 54130749 -65614149 + L2 LINE L2 119 530 -2784 180 167 0 0 chr13 54130750 54130798 -65614100 + A-rich Low_complexity Low_complexity 1 48 0 181 260 27 55 chr13 54130798 54130871 -65614027 + L2 LINE L2 518 588 -2726 1917 264 37 8 chr13 54130891 54131590 -65613308 - L1MB7 LINE L1 -4 6162 5421 1173 287 142 124 chr13 54131590 54132744 -65612154 + L2 LINE L2 566 1697 -1616 780 256 20 20 chr13 54132744 54132947 -65611951 + MER63A DNA MER1_type 1 203 -7 1173 287 142 124 chr13 54132947 54134113 -65610785 + L2 LINE L2 1697 3184 -129 186 167 0 0 chr13 54134113 54134149 -65610749 + (TATATG)n Simple_repeat Simple_repeat 4 39 0 1173 287 142 124 chr13 54134149 54134281 -65610617 + L2 LINE L2 3184 3312 -1 23 33 0 0 chr13 54135659 54135689 -65609209 + AT_rich Low_complexity Low_complexity 1 30 0 250 327 9 62 chr13 54136550 54136663 -65608235 - L2 LINE L2 0 3313 3207 1461 194 70 32 chr13 54136766 54136829 -65608069 + MLT1A1 LTR MaLR 12 71 -294 457 99 70 0 chr13 54136829 54136900 -65607998 + MADE1 DNA Mariner 5 80 0 1461 194 70 32 chr13 54136900 54137177 -65607721 + MLT1A1 LTR MaLR 71 365 0 357 339 96 6 chr13 54137177 54137352 -65607546 + MLT2E LTR ERVL 24 214 -414 776 315 24 20 chr13 54137351 54137643 -65607255 + MLT2E LTR ERVL 321 613 -15 610 296 7 0 chr13 54137986 54138138 -65606760 + LTR33 LTR ERVL 36 188 -333 33 43 0 0 chr13 54138920 54138967 -65605931 + AT_rich Low_complexity Low_complexity 1 47 0 30 27 0 0 chr13 54139354 54139391 -65605507 + AT_rich Low_complexity Low_complexity 1 37 0 2713 247 50 64 chr13 54139483 54139764 -65605134 + L1M4 LINE L1 14 297 -6245 2359 45 3 0 chr13 54139764 54140050 -65604848 + AluY SINE Alu 1 287 -24 2713 247 50 64 chr13 54140050 54140588 -65604310 + L1M4 LINE L1 297 817 -5725 2270 75 0 3 chr13 54140588 54140880 -65604018 - AluY SINE Alu -20 291 1 2713 247 50 64 chr13 54140880 54141132 -65603766 + L1M4 LINE L1 817 1071 -5471 3365 267 39 46 chr13 54141134 54141524 -65603374 + L1M4 LINE L1 2051 2442 -4202 1510 206 11 7 chr13 54141524 54141835 -65603063 + AluJo SINE Alu 1 312 0 3365 267 39 46 chr13 54141835 54142270 -65602628 + L1M4 LINE L1 2442 2878 -3766 1995 128 17 0 chr13 54142270 54142560 -65602338 + AluSx SINE Alu 1 295 -17 3365 267 39 46 chr13 54142560 54143308 -65601590 + L1M4 LINE L1 2878 3560 -3084 1718 180 0 26 chr13 54143308 54143613 -65601285 + AluSx SINE Alu 3 299 -13 3365 267 39 46 chr13 54143613 54144106 -65600792 + L1M4 LINE L1 3560 4055 -2589 2208 96 3 0 chr13 54144106 54144388 -65600510 - AluSq SINE Alu -19 294 12 2212 140 39 3 chr13 54144489 54144874 -65600024 - Tigger3b DNA MER2_type -577 654 256 26 0 0 0 chr13 54145486 54145512 -65599386 + AT_rich Low_complexity Low_complexity 1 26 0 28 29 0 0 chr13 54145962 54145997 -65598901 + AT_rich Low_complexity Low_complexity 1 35 0 456 322 33 41 chr13 54146642 54146887 -65598011 + MIR SINE MIR 19 261 -1 309 245 0 0 chr13 54147843 54147945 -65596953 + CT-rich Low_complexity Low_complexity 3 104 0 351 276 108 63 chr13 54148014 54148200 -65596698 - MLT1L LTR MaLR -31 584 408 1975 134 24 46 chr13 54148200 54148572 -65596326 + THE1B LTR MaLR 1 364 0 351 276 108 63 chr13 54148572 54148759 -65596139 - MLT1L LTR MaLR -207 408 110 970 227 129 98 chr13 54150066 54150546 -65594352 + MLT1D-int LTR MaLR 877 1371 0 1196 269 80 23 chr13 54150546 54151022 -65593876 + MLT1D LTR MaLR 1 503 -2 1067 210 44 0 chr13 54151036 54151241 -65593657 + AluJb SINE Alu 87 300 -12 1252 252 104 68 chr13 54151417 54152275 -65592623 + L1MC/D LINE L1 4264 5152 -994 450 162 0 0 chr13 54152287 54152355 -65592543 + Tigger2 DNA MER2_type 1 68 -2650 * 2182 146 36 36 chr13 54152346 54152792 -65592106 + Tigger2 DNA MER2_type 2273 2718 0 456 213 8 8 chr13 54152792 54152914 -65591984 + L1MC/D LINE L1 5361 5482 -760 266 89 44 0 chr13 54153021 54153066 -65591832 - AluJ/FLAM SINE Alu -244 58 12 3323 244 43 21 chr13 54153081 54153829 -65591069 + L1M4 LINE L1 4046 4833 -1811 1230 242 35 0 chr13 54153829 54154114 -65590784 + AluJo SINE Alu 3 297 -15 3323 244 43 21 chr13 54154114 54154560 -65590338 + L1M4 LINE L1 4833 5267 -1377 186 43 0 0 chr13 54154561 54154584 -65590314 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9486 196 9 17 chr13 54154591 54156311 -65588587 + L1P4 LINE L1 16 1722 -5127 11305 224 22 27 chr13 54156315 54157177 -65587721 + L1P4 LINE L1 2879 3744 -3125 1666 212 0 0 chr13 54157177 54157479 -65587419 + AluJb SINE Alu 1 302 -10 11305 224 22 27 chr13 54157479 54157770 -65587128 + L1P4 LINE L1 3744 4035 -2834 1964 157 0 0 chr13 54157770 54158057 -65586841 + AluSx SINE Alu 1 287 -25 213 39 0 0 chr13 54158061 54158087 -65586811 + (CAA)n Simple_repeat Simple_repeat 2 27 0 11305 224 22 27 chr13 54158087 54160207 -65584691 + L1P4 LINE L1 4038 6139 -730 965 155 0 58 chr13 54160532 54160739 -65584159 - L1MA4A LINE L1 -5 6298 6104 5357 164 21 5 chr13 54160748 54161685 -65583213 + L1P LINE L1 11 962 -5184 8730 78 0 0 chr13 54161699 54162825 -65582073 - HERVK9 LTR ERVK -3166 2750 1625 4333 106 10 32 chr13 54162825 54163502 -65581396 - HERVK9 LTR ERVK -5254 662 1 1552 138 105 14 chr13 54163502 54163798 -65581100 - MER9 LTR ERVK 0 511 189 16348 84 1 7 chr13 54163799 54166090 -65578808 + L1P LINE L1 2459 4734 -1412 333 0 0 0 chr13 54167055 54167092 -65577806 + (TA)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr13 54167328 54167358 -65577540 + AT_rich Low_complexity Low_complexity 1 30 0 333 0 0 0 chr13 54167552 54167589 -65577309 + (TTA)n Simple_repeat Simple_repeat 2 38 0 10167 233 64 32 chr13 54167589 54170953 -65573945 - L1MB1 LINE L1 -11 5981 2725 2819 187 70 36 chr13 54170953 54171712 -65573186 + LTR1 LTR ERV1 1 785 0 1613 119 16 0 chr13 54171712 54171963 -65572935 - AluSx SINE Alu -57 255 1 10167 233 64 32 chr13 54171963 54174003 -65570895 - L1MB1 LINE L1 -3267 2725 716 279 0 0 0 chr13 54174003 54174034 -65570864 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 10167 233 64 32 chr13 54174034 54174773 -65570125 - L1MB1 LINE L1 -5276 716 2 1844 130 11 7 chr13 54175346 54175631 -65569267 + AluSx SINE Alu 1 286 -26 2333 90 3 0 chr13 54175673 54175983 -65568915 + AluY SINE Alu 1 311 0 25 51 0 0 chr13 54176689 54176728 -65568170 + AT_rich Low_complexity Low_complexity 1 39 0 2122 138 0 0 chr13 54177210 54177522 -65567376 + AluSx SINE Alu 1 312 0 378 20 41 0 chr13 54177543 54177592 -65567306 - AluY SINE Alu -8 294 244 1391 38 0 0 chr13 54177592 54177750 -65567148 - AluY SINE Alu -144 167 10 34 24 0 0 chr13 54177772 54177813 -65567085 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr13 54178274 54178299 -65566599 + AT_rich Low_complexity Low_complexity 1 25 0 897 325 49 41 chr13 54178332 54178910 -65565988 - L2 LINE L2 -26 3287 2700 1382 188 17 31 chr13 54178910 54179203 -65565695 + AluJo SINE Alu 1 289 -23 897 325 49 41 chr13 54179203 54179308 -65565590 - L2 LINE L2 -613 2700 2597 523 318 124 22 chr13 54181246 54181561 -65563337 + MLT1J1 LTR MaLR 99 445 -1 23 0 0 0 chr13 54182052 54182075 -65562823 + AT_rich Low_complexity Low_complexity 1 23 0 4073 189 13 8 chr13 54182138 54182971 -65561927 + L1MC1 LINE L1 5491 6327 -6 324 102 0 0 chr13 54182974 54183023 -65561875 + (CA)n Simple_repeat Simple_repeat 2 50 0 1546 274 132 23 chr13 54184485 54185181 -65559717 - L1ME3A LINE L1 -22 6148 5377 9671 197 28 73 chr13 54185200 54186587 -65558311 - LTR48B-int LTR ERV1 -2532 3799 2576 2320 72 3 3 chr13 54186587 54186880 -65558018 - AluSg SINE Alu -17 293 1 9671 197 28 73 chr13 54186880 54188033 -65556865 - LTR48B-int LTR ERV1 -3755 2576 1373 359 153 0 59 chr13 54188117 54188202 -65556696 - LTR48B-int LTR ERV1 -4953 1378 1299 * 2855 169 37 58 chr13 54188201 54189307 -65555591 - LTR48B-int LTR ERV1 -3264 1616 1 1776 231 96 38 chr13 54189310 54189917 -65554981 - LTR48B LTR ERV1 -1 643 2 749 133 215 0 chr13 54189920 54190078 -65554820 - L1MB1 LINE L1 -81 6108 5917 199 356 8 42 chr13 54190771 54190807 -65554091 + MIR SINE MIR 32 68 -140 1867 158 6 3 chr13 54190807 54191118 -65553780 - AluJb SINE Alu 0 312 1 199 356 8 42 chr13 54191118 54191199 -65553699 + MIR SINE MIR 68 145 -63 215 0 0 62 chr13 54191266 54191298 -65553600 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 22 35 0 0 chr13 54191338 54191367 -65553531 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr13 54191614 54191645 -65553253 + AT_rich Low_complexity Low_complexity 1 31 0 504 299 89 41 chr13 54191742 54192033 -65552865 - MLT1I LTR MaLR -42 367 63 193 197 30 0 chr13 54193232 54193298 -65551600 + CT-rich Low_complexity Low_complexity 2 69 0 22 0 0 0 chr13 54193329 54193351 -65551547 + AT_rich Low_complexity Low_complexity 1 22 0 2136 111 7 19 chr13 54195893 54196200 -65548698 - AluSx SINE Alu -9 303 1 37 23 0 0 chr13 54196215 54196259 -65548639 + AT_rich Low_complexity Low_complexity 1 44 0 379 314 76 81 chr13 54197383 54197753 -65547145 + MLT1K LTR MaLR 208 575 -13 499 261 79 30 chr13 54197789 54198118 -65546780 + L1MC4 LINE L1 7695 8039 -3 1082 214 0 0 chr13 54199400 54199601 -65545297 - AluJo SINE Alu -25 287 87 212 218 0 36 chr13 54199688 54199743 -65545155 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr13 54199970 54199991 -65544907 + AT_rich Low_complexity Low_complexity 1 21 0 1351 226 32 32 chr13 54200212 54200557 -65544341 - MLT1A1 LTR MaLR 0 365 21 1338 186 83 11 chr13 54200560 54200872 -65544026 - MER61B LTR ERV1 0 425 1 290 80 20 0 chr13 54202547 54202597 -65542301 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1815 127 62 4 chr13 54202599 54202874 -65542024 - AluSx SINE Alu -21 291 1 2795 7 0 0 chr13 54203628 54203934 -65540964 + AluYa5 SINE Alu 1 306 -5 21 0 0 0 chr13 54205443 54205464 -65539434 + AT_rich Low_complexity Low_complexity 1 21 0 3189 147 0 0 chr13 54205944 54206441 -65538457 + LOR1a LTR ERV1 1 497 0 28 0 0 0 chr13 54207942 54207970 -65536928 + AT_rich Low_complexity Low_complexity 1 28 0 827 233 6 6 chr13 54208229 54208405 -65536493 - FRAM SINE Alu -1 175 1 214 50 50 0 chr13 54208406 54208446 -65536452 + (TA)n Simple_repeat Simple_repeat 2 43 0 540 308 115 36 chr13 54209081 54209412 -65535486 - L2 LINE L2 -2 3311 2955 27 29 0 0 chr13 54209784 54209818 -65535080 + AT_rich Low_complexity Low_complexity 1 34 0 9360 162 37 15 chr13 54209818 54212795 -65532103 - L1MA3 LINE L1 0 6305 3260 2108 120 3 3 chr13 54212798 54213097 -65531801 - AluSq SINE Alu -8 305 7 9344 119 25 32 chr13 54213099 54214511 -65530387 - L1M1 LINE L1 -3924 3641 2252 1496 209 7 3 chr13 54214511 54214807 -65530091 + AluJb SINE Alu 1 297 -15 9344 119 25 32 chr13 54214807 54215043 -65529855 - L1M1 LINE L1 -5313 2252 2016 680 144 8 76 chr13 54215037 54215169 -65529729 + L1M1 LINE L1 481 603 -6962 * 1868 152 32 7 chr13 54215175 54215485 -65529413 - L1M1 LINE L1 -5551 2014 1697 * 4608 186 11 36 chr13 54215483 54216360 -65528538 - L1M1 LINE L1 -6702 863 9 22 0 0 0 chr13 54216655 54216677 -65528221 + AT_rich Low_complexity Low_complexity 1 22 0 1675 257 32 25 chr13 54216902 54217551 -65527347 - L1MEc LINE L1 -4122 2274 1621 1535 237 24 44 chr13 54217566 54217979 -65526919 + MSTB1 LTR MaLR 1 405 -27 499 273 97 0 chr13 54217980 54218134 -65526764 - FAM SINE Alu -5 170 2 698 85 11 0 chr13 54218154 54218248 -65526650 - AluSq/x SINE Alu -179 133 39 286 27 27 0 chr13 54218249 54218286 -65526612 + MSTB1 LTR MaLR 395 432 0 30 0 0 0 chr13 54218309 54218339 -65526559 + AT_rich Low_complexity Low_complexity 1 30 0 2131 94 16 26 chr13 54218388 54218697 -65526201 - AluY SINE Alu -3 308 3 248 375 27 9 chr13 54218973 54219085 -65525813 - MER81 DNA DNA 0 114 1 2998 282 51 19 chr13 54219087 54220291 -65524607 - L1MEc LINE L1 -5125 1271 30 2185 120 3 0 chr13 54220355 54220654 -65524244 + AluSp SINE Alu 1 300 -13 557 311 128 45 chr13 54221184 54221631 -65523267 + MLT1J LTR MaLR 28 511 0 21 0 0 0 chr13 54223305 54223326 -65521572 + AT_rich Low_complexity Low_complexity 1 21 0 3680 264 75 80 chr13 54223353 54227615 -65517283 + L1MC/D LINE L1 6 4426 -2000 330 141 16 0 chr13 54227615 54227679 -65517219 + L1PA16 LINE L1 6102 6166 0 3680 264 75 80 chr13 54227679 54228802 -65516096 + L1MC/D LINE L1 4426 5553 -873 26 30 0 0 chr13 54229131 54229164 -65515734 + AT_rich Low_complexity Low_complexity 1 33 0 1283 178 119 3 chr13 54229167 54229453 -65515445 + L1MC/D LINE L1 5662 5980 -633 2342 86 0 3 chr13 54229545 54229846 -65515052 - AluSq SINE Alu -13 300 1 268 243 95 74 chr13 54230091 54230239 -65514659 + L2 LINE L2 3159 3309 -4 326 294 129 18 chr13 54230259 54230429 -65514469 - MER5A DNA MER1_type 0 189 1 233 153 0 34 chr13 54230889 54230948 -65513950 + (TTATA)n Simple_repeat Simple_repeat 4 60 0 2072 127 0 0 chr13 54232128 54232427 -65512471 + AluY SINE Alu 1 299 -12 441 169 0 0 chr13 54233637 54233720 -65511178 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 34 78 0 0 chr13 54233965 54234029 -65510869 + AT_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chr13 54234118 54234141 -65510757 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr13 54235759 54235795 -65509103 + AT_rich Low_complexity Low_complexity 1 36 0 1765 205 87 11 chr13 54235855 54236235 -65508663 + L1P3 LINE L1 36 444 -5431 736 168 15 0 chr13 54236256 54236387 -65508511 + L1 LINE L1 4844 4976 -1170 685 242 215 44 chr13 54236589 54236876 -65508022 - L1MEc LINE L1 -2764 3451 3214 2253 88 10 3 chr13 54236876 54237184 -65507714 - AluY SINE Alu -1 310 1 685 242 215 44 chr13 54237184 54237377 -65507521 - L1MEc LINE L1 -3001 3214 3055 2133 99 0 0 chr13 54237377 54237693 -65507205 - AluSg SINE Alu 0 316 1 685 242 215 44 chr13 54237693 54237801 -65507097 - L1MEc LINE L1 -3160 3055 2760 789 232 150 29 chr13 54237913 54238322 -65506576 - L1MEc LINE L1 -3625 2590 2162 1833 108 17 61 chr13 54238322 54238663 -65506235 - AluSx SINE Alu 0 328 1 789 232 150 29 chr13 54238663 54238729 -65506169 - L1MEc LINE L1 -4053 2162 2105 742 240 24 10 chr13 54238748 54238956 -65505942 - L1MD3 LINE L1 -8 7987 7777 466 288 7 7 chr13 54238977 54239116 -65505782 - L1MEc LINE L1 -4580 1816 1678 786 161 88 20 chr13 54239202 54239439 -65505459 + L1MCa LINE L1 2269 2560 -3950 494 303 53 54 chr13 54239615 54240049 -65504849 - L1M2a LINE L1 -5328 883 10 2270 66 0 26 chr13 54241288 54241591 -65503307 + AluY SINE Alu 1 295 -16 1629 137 109 11 chr13 54241645 54241929 -65502969 + AluJb SINE Alu 1 312 0 326 41 0 41 chr13 54241932 54241981 -65502917 + (GAAAA)n Simple_repeat Simple_repeat 2 48 0 188 347 116 0 chr13 54242346 54242441 -65502457 + L2 LINE L2 2957 3062 -251 29 47 0 0 chr13 54243537 54243580 -65501318 + AT_rich Low_complexity Low_complexity 1 43 0 291 345 34 47 chr13 54243806 54243954 -65500944 + L2 LINE L2 3122 3267 -5 426 344 31 18 chr13 54244253 54244477 -65500421 - L1M4 LINE L1 -743 5403 5177 748 282 95 12 chr13 54245709 54245950 -65498948 + MIR SINE MIR 2 262 0 596 303 5 21 chr13 54246666 54246854 -65498044 - MIR SINE MIR -48 214 30 378 0 0 0 chr13 54246858 54246900 -65497998 + (TG)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr13 54247084 54247109 -65497789 + AT_rich Low_complexity Low_complexity 1 25 0 433 373 39 39 chr13 54248272 54248661 -65496237 - L2 LINE L2 -525 2789 2401 263 59 0 0 chr13 54249784 54249818 -65495080 + HERVL LTR ERVL 238 271 -5383 183 42 0 0 chr13 54250523 54250547 -65494351 + (TA)n Simple_repeat Simple_repeat 2 25 0 2026 130 10 0 chr13 54250599 54250907 -65493991 + AluSx SINE Alu 1 311 -1 42 36 0 0 chr13 54251287 54251343 -65493555 + AT_rich Low_complexity Low_complexity 1 56 0 270 106 0 0 chr13 54251411 54251458 -65493440 + (CAATT)n Simple_repeat Simple_repeat 3 49 0 25 51 0 0 chr13 54252208 54252247 -65492651 + AT_rich Low_complexity Low_complexity 1 39 0 187 345 0 12 chr13 54253041 54253125 -65491773 + L2 LINE L2 3141 3223 -90 1033 335 75 13 chr13 54253609 54254083 -65490815 + L2 LINE L2 2779 3283 -30 1827 157 26 3 chr13 54256714 54257058 -65487840 + L1MA5 LINE L1 5949 6300 0 25 90 0 0 chr13 54257113 54257180 -65487718 + AT_rich Low_complexity Low_complexity 1 67 0 24 32 0 0 chr13 54257326 54257357 -65487541 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 54258016 54258039 -65486859 + AT_rich Low_complexity Low_complexity 1 23 0 285 197 8 49 chr13 54258063 54258185 -65486713 + (TAAA)n Simple_repeat Simple_repeat 2 118 0 22 35 0 0 chr13 54258251 54258280 -65486618 + AT_rich Low_complexity Low_complexity 1 29 0 281 235 61 10 chr13 54258494 54258592 -65486306 - LTR16A LTR ERVL -105 345 243 1048 161 0 0 chr13 54258594 54258762 -65486136 - AluSq SINE Alu -10 303 136 494 118 0 0 chr13 54258766 54258842 -65486056 + AluSq/x SINE Alu 39 114 -199 249 57 0 0 chr13 54259967 54260002 -65484896 + (TG)n Simple_repeat Simple_repeat 1 35 0 2000 190 67 9 chr13 54260667 54261103 -65483795 + LOR1b LTR ERV1 1 461 0 273 221 38 139 chr13 54261771 54261929 -65482969 - L1ME2 LINE L1 -21 6143 6002 2465 186 31 69 chr13 54261987 54262595 -65482303 + MER34C LTR ERV1 1 585 0 340 193 157 0 chr13 54262597 54262680 -65482218 - L1ME2 LINE L1 -205 5959 5864 2383 175 110 69 chr13 54263178 54263876 -65481022 - LTR8A LTR ERV1 0 727 1 1059 275 64 43 chr13 54263891 54264328 -65480570 + LTR16A1 LTR ERVL 4 449 -8 3158 150 19 15 chr13 54264497 54265085 -65479813 - LTR49 LTR ERV1 -3 592 3 205 281 16 49 chr13 54265101 54265286 -65479612 + T-rich Low_complexity Low_complexity 2 180 0 838 128 0 15 chr13 54265433 54265566 -65479332 + MER41C LTR ERV1 1 131 -423 * 966 180 95 5 chr13 54265557 54265768 -65479130 + LTR1B LTR ERV1 597 826 0 1432 242 81 5 chr13 54266005 54266369 -65478529 + MLT2B1 LTR ERVL 1 397 -67 1005 148 25 6 chr13 54266419 54266581 -65478317 - LTR29 LTR ERV1 -3 619 455 1921 191 5 23 chr13 54266584 54266971 -65477927 - MER67D LTR ERV1 -123 391 12 368 283 9 35 chr13 54267260 54267373 -65477525 - MIR3 SINE MIR -39 169 60 4620 139 60 36 chr13 54267958 54268840 -65476058 + MER4D LTR ERV1 1 903 0 2214 124 14 30 chr13 54268887 54269257 -65475641 - THE1B LTR MaLR 0 364 1 11471 100 2 1 chr13 54269257 54270834 -65474064 - THE1B-int LTR MaLR 0 1580 1 2106 136 8 37 chr13 54270834 54271209 -65473689 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr13 54271263 54271291 -65473607 + AT_rich Low_complexity Low_complexity 1 28 0 215 206 0 44 chr13 54271883 54271951 -65472947 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1296 133 10 0 chr13 54272179 54272382 -65472516 - MER54B LTR ERVL -1 792 588 815 224 12 0 chr13 54272374 54272539 -65472359 - MER54B LTR ERVL -515 278 112 * 1318 217 93 3 chr13 54272539 54272938 -65471960 + MER66A LTR ERV1 1 478 0 708 179 9 0 chr13 54272938 54273050 -65471848 - MER54B LTR ERVL -678 115 3 2332 94 0 0 chr13 54273230 54273527 -65471371 - AluY SINE Alu -14 297 1 28 79 0 0 chr13 54273762 54273825 -65471073 + AT_rich Low_complexity Low_complexity 1 63 0 21 71 0 0 chr13 54274105 54274147 -65470751 + AT_rich Low_complexity Low_complexity 1 42 0 7884 112 4 4 chr13 54274155 54275327 -65469571 + L1P LINE L1 1726 2897 -3249 21 0 0 0 chr13 54275494 54275515 -65469383 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr13 54275562 54275626 -65469272 + AT_rich Low_complexity Low_complexity 1 64 0 68 42 0 0 chr13 54275713 54275809 -65469089 + AT_rich Low_complexity Low_complexity 1 96 0 1622 223 54 82 chr13 54276365 54277343 -65467555 - L1MD2 LINE L1 -13 6346 5245 4762 100 43 35 chr13 54277343 54278116 -65466782 - LTR19C LTR ERV1 0 779 1 1622 223 54 82 chr13 54278116 54278690 -65466208 - L1MD2 LINE L1 -1114 5245 4657 21 36 0 0 chr13 54279216 54279244 -65465654 + AT_rich Low_complexity Low_complexity 1 28 0 1275 192 80 17 chr13 54279533 54279820 -65465078 - AluJb SINE Alu -7 305 1 2090 125 0 7 chr13 54279908 54280205 -65464693 + AluSg SINE Alu 1 295 -15 1121 200 4 0 chr13 54280227 54280457 -65464441 + L1 LINE L1 4507 4737 -1409 686 215 6 35 chr13 54280644 54280816 -65464082 - MER3 DNA MER1_type -41 168 2 180 328 52 0 chr13 54280930 54280988 -65463910 - L2 LINE L2 -248 3065 3005 262 396 29 0 chr13 54281116 54281255 -65463643 - L2 LINE L2 -441 2873 2731 1767 178 18 12 chr13 54281623 54281955 -65462943 + MLT1B LTR MaLR 57 390 0 28 71 0 0 chr13 54282027 54282083 -65462815 + AT_rich Low_complexity Low_complexity 1 56 0 35 71 0 0 chr13 54282121 54282191 -65462707 + AT_rich Low_complexity Low_complexity 1 70 0 525 154 0 0 chr13 54282597 54282688 -65462210 - L1MA8 LINE L1 -12 6279 6189 2668 7 0 3 chr13 54283688 54283985 -65460913 - AluYa5 SINE Alu -15 296 1 186 206 111 16 chr13 54284317 54284380 -65460518 + MIR SINE MIR 84 152 -110 1130 234 60 18 chr13 54284484 54284766 -65460132 + AluJo SINE Alu 1 294 -8 3054 221 42 11 chr13 54284918 54285030 -65459868 - L1MA9 LINE L1 -38 6274 6167 198 118 0 0 chr13 54285030 54285064 -65459834 + (TG)n Simple_repeat Simple_repeat 1 34 0 3054 221 42 11 chr13 54285064 54285713 -65459185 - L1MA9 LINE L1 -145 6167 5489 5791 60 14 36 chr13 54285713 54286511 -65458387 - LTR17 LTR ERV1 0 780 1 2362 52 14 0 chr13 54286511 54286799 -65458099 - HERV17 LTR ERV1 0 8626 8335 294 51 0 0 chr13 54286789 54286828 -65458070 - HERV17 LTR ERV1 -1078 7548 7510 * 3978 45 4 0 chr13 54286821 54287304 -65457594 - HERV17 LTR ERV1 -2607 6019 5535 548 0 0 0 chr13 54287301 54287362 -65457536 - HERV17 LTR ERV1 -3026 5600 5540 * 6105 38 19 0 chr13 54287347 54288090 -65456808 - HERV17 LTR ERV1 -2926 5700 4944 429 349 77 10 chr13 54289000 54289195 -65455703 + MIR SINE MIR 31 238 -24 1824 154 0 4 chr13 54289351 54289653 -65455245 - AluSx SINE Alu 0 312 20 1257 256 54 31 chr13 54289788 54290175 -65454723 + MSTD LTR MaLR 1 396 0 5490 248 98 44 chr13 54290178 54291822 -65453076 + MSTD-int LTR MaLR 2 1735 0 5041 107 7 13 chr13 54291863 54292618 -65452280 + L1PB2 LINE L1 5400 6149 -2 201 39 0 0 chr13 54292628 54292654 -65452244 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 981 278 126 12 chr13 54292666 54293000 -65451898 + MSTD LTR MaLR 25 396 0 288 154 0 0 chr13 54293597 54293649 -65451249 + (TA)n Simple_repeat Simple_repeat 2 53 0 204 40 0 0 chr13 54293685 54293710 -65451188 + (TG)n Simple_repeat Simple_repeat 2 26 0 989 154 22 22 chr13 54294644 54294826 -65450072 - MER61A LTR ERV1 0 343 162 21 36 0 0 chr13 54294864 54294892 -65450006 + AT_rich Low_complexity Low_complexity 1 28 0 1779 269 161 37 chr13 54295051 54296195 -65448703 + L1MC4a LINE L1 5794 7079 -729 2396 118 16 11 chr13 54296405 54296778 -65448120 + THE1C LTR MaLR 1 375 0 9218 118 29 67 chr13 54296778 54298421 -65446477 + THE1C-int LTR MaLR 1 1580 0 2085 161 14 6 chr13 54298421 54298782 -65446116 + THE1C LTR MaLR 1 364 -11 1055 174 30 25 chr13 54298760 54298961 -65445937 + MER67C LTR ERV1 202 403 -307 * 318 186 41 21 chr13 54299127 54299224 -65445674 + L1MC4a LINE L1 7164 7262 -546 187 420 0 0 chr13 54301917 54301998 -65442900 + MIR SINE MIR 50 130 -78 498 130 0 0 chr13 54303748 54303825 -65441073 + L1PA12 LINE L1 6076 6152 -16 221 327 107 24 chr13 54304227 54304408 -65440490 - MIR3 SINE MIR -33 229 35 186 43 0 0 chr13 54304868 54304891 -65440007 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 2367 78 7 0 chr13 54304909 54305215 -65439683 + AluY SINE Alu 1 308 -3 186 133 0 0 chr13 54305235 54305265 -65439633 + (A)n Simple_repeat Simple_repeat 1 30 0 683 221 28 11 chr13 54306703 54306884 -65438014 + L1MA8 LINE L1 6067 6250 -41 2160 142 0 0 chr13 54306929 54307232 -65437666 + AluSx SINE Alu 1 303 -9 964 207 13 30 chr13 54307862 54308099 -65436799 + AluJo SINE Alu 50 282 -30 208 333 0 0 chr13 54308517 54308568 -65436330 + L2 LINE L2 3217 3267 -5 21 82 0 0 chr13 54308862 54308911 -65435987 + AT_rich Low_complexity Low_complexity 1 49 0 520 239 99 0 chr13 54308972 54309017 -65435881 - L1MA10 LINE L1 -3 6331 6252 294 29 0 0 chr13 54309017 54309052 -65435846 + (TA)n Simple_repeat Simple_repeat 2 36 0 1814 267 50 35 chr13 54309052 54310508 -65434390 - L1ME1 LINE L1 -50 6185 4677 3973 228 46 26 chr13 54310901 54311957 -65432941 + Tigger6a DNA MER2_type 6 1083 0 335 253 84 76 chr13 54312041 54312290 -65432608 - L1ME1 LINE L1 -2885 3330 3080 34 0 0 0 chr13 54312312 54312346 -65432552 + AT_rich Low_complexity Low_complexity 1 34 0 313 209 90 0 chr13 54312821 54312888 -65432010 - LTR33A LTR ERVL -5 518 446 389 244 38 50 chr13 54314567 54314727 -65430171 + MER104 DNA Tc2 19 176 -4 227 320 78 23 chr13 54314736 54314864 -65430034 - MIR SINE MIR -109 153 19 22 0 0 0 chr13 54315459 54315481 -65429417 + AT_rich Low_complexity Low_complexity 1 22 0 1408 217 3 7 chr13 54315482 54315768 -65429130 - AluJo SINE Alu -24 288 4 215 31 31 0 chr13 54316012 54316044 -65428854 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 252 279 0 0 chr13 54316236 54316297 -65428601 - L2 LINE L2 -12 3301 3241 188 132 0 26 chr13 54316578 54316586 -65428312 + (TG)n Simple_repeat Simple_repeat 2 9 -29 1785 146 29 38 chr13 54316586 54316901 -65427997 + AluSx SINE Alu 1 312 0 188 132 0 26 chr13 54316901 54316930 -65427968 + (TG)n Simple_repeat Simple_repeat 9 38 0 2287 96 0 0 chr13 54316943 54317246 -65427652 - AluSx SINE Alu -9 303 1 477 0 0 0 chr13 54317294 54317347 -65427551 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 27 29 0 0 chr13 54317438 54317472 -65427426 + AT_rich Low_complexity Low_complexity 1 34 0 2482 63 0 0 chr13 54317554 54317873 -65427025 - L1PA5 LINE L1 -6 6148 5830 456 104 0 0 chr13 54317975 54318042 -65426856 + (CA)n Simple_repeat Simple_repeat 2 68 0 238 48 95 24 chr13 54318042 54318084 -65426814 + MLT2A2 LTR ERVL 409 453 0 346 302 70 80 chr13 54318322 54318696 -65426202 - L2 LINE L2 -787 2527 2158 2096 116 51 40 chr13 54320350 54320720 -65424178 + THE1C LTR MaLR 1 374 -1 469 202 20 0 chr13 54320940 54321039 -65423859 + FRAM SINE Alu 61 161 -15 671 309 81 29 chr13 54322050 54322845 -65422053 - L1ME1 LINE L1 -3875 2521 1686 260 238 24 0 chr13 54322897 54322981 -65421917 - L1ME1 LINE L1 -5266 939 854 514 335 68 49 chr13 54323409 54323862 -65421036 - L1ME1 LINE L1 -5597 608 147 369 238 76 23 chr13 54323871 54324043 -65420855 - MER113 DNA MER1_type? -304 217 37 304 240 30 50 chr13 54324480 54324580 -65420318 + MIR SINE MIR 131 228 -34 2071 113 0 27 chr13 54324926 54325227 -65419671 + AluSg SINE Alu 1 293 -17 24 77 0 0 chr13 54326077 54326129 -65418769 + AT_rich Low_complexity Low_complexity 1 52 0 29 60 0 0 chr13 54326375 54326425 -65418473 + AT_rich Low_complexity Low_complexity 1 50 0 585 76 0 0 chr13 54327157 54327236 -65417662 + (TTC)n Simple_repeat Simple_repeat 1 79 0 509 370 74 21 chr13 54329460 54329974 -65414924 - L2 LINE L2 -1606 1708 1168 694 271 83 41 chr13 54330079 54330345 -65414553 - MLT1C LTR MaLR 0 467 191 2817 168 29 8 chr13 54330375 54331041 -65413857 + L1P5 LINE L1 5100 5775 -379 3196 84 35 0 chr13 54331300 54331730 -65413168 - MLT2A2 LTR ERVL -8 445 1 306 223 0 106 chr13 54332150 54332244 -65412654 - HAL1b LINE L1 -472 876 793 28 86 0 0 chr13 54332388 54332458 -65412440 + AT_rich Low_complexity Low_complexity 1 70 0 698 226 58 13 chr13 54332832 54333022 -65411876 + L1M2 LINE L1 5297 5492 -743 5687 65 15 36 chr13 54333022 54333819 -65411079 + LTR17 LTR ERV1 1 780 0 25051 57 12 11 chr13 54333819 54337056 -65407842 + HERV17 LTR ERV1 1 3241 -5385 383 197 61 0 chr13 54537100 54537166 -65207732 + Tigger3(Golem) DNA MER2_type 1 70 -2959 1014 212 36 5 chr13 54537201 54537423 -65207475 + Tigger3(Golem) DNA MER2_type 2801 3029 0 22 0 0 0 chr13 54539228 54539250 -65205648 + AT_rich Low_complexity Low_complexity 1 22 0 235 321 0 25 chr13 54539564 54539645 -65205253 - L3 LINE CR1 -11 1566 1488 9939 103 13 1 chr13 54540152 54541536 -65203362 - HERVL LTR ERVL -1052 4602 3203 12692 83 9 1 chr13 54541636 54543313 -65201585 - HERVL LTR ERVL -3009 2645 955 1688 122 8 4 chr13 54543314 54543560 -65201338 + AluSp SINE Alu 1 247 -66 6434 158 34 4 chr13 54543660 54544803 -65200095 - Tigger3b DNA MER2_type -26 1205 29 27 29 0 0 chr13 54544815 54544849 -65200049 + AT_rich Low_complexity Low_complexity 1 34 0 682 166 83 24 chr13 54545212 54545381 -65199517 + MER53 DNA DNA 1 179 -10 32 43 0 0 chr13 54546108 54546154 -65198744 + AT_rich Low_complexity Low_complexity 1 46 0 2044 135 0 0 chr13 54546290 54546578 -65198320 - AluSq SINE Alu -25 288 1 503 317 49 0 chr13 54546646 54546829 -65198069 - MIR SINE MIR -36 226 35 931 267 78 45 chr13 54547319 54547678 -65197220 + MLT1E2 LTR MaLR 51 421 -205 1520 112 22 4 chr13 54547679 54547727 -65197171 - MLT2A1 LTR ERVL 0 444 398 318 26 0 0 chr13 54547727 54547766 -65197132 + (CA)n Simple_repeat Simple_repeat 2 40 0 1520 112 22 4 chr13 54547766 54547949 -65196949 - MLT2A1 LTR ERVL -46 398 209 25 51 0 0 chr13 54549211 54549250 -65195648 + AT_rich Low_complexity Low_complexity 1 39 0 617 80 140 0 chr13 54549987 54550087 -65194811 + LTR9B LTR ERV1 447 560 -84 198 0 0 0 chr13 54550087 54550109 -65194789 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 25 0 0 0 chr13 54550125 54550150 -65194748 + AT_rich Low_complexity Low_complexity 1 25 0 295 211 0 0 chr13 54550998 54551050 -65193848 + Tigger5 DNA MER2_type 1 52 -2271 524 174 10 20 chr13 54551051 54551149 -65193749 + Tigger5 DNA MER2_type 2227 2323 0 297 234 0 16 chr13 54551174 54551238 -65193660 - Tigger7 DNA MER2_type 0 2487 2425 652 206 38 0 chr13 54551240 54551371 -65193527 + MER46A DNA MER2_type 101 236 0 * 1000 124 40 40 chr13 54551371 54551571 -65193327 - Tigger7 DNA MER2_type -85 2402 2203 911 218 6 6 chr13 54551570 54551740 -65193158 - Tigger7 DNA MER2_type -535 170 1 * 22 0 0 0 chr13 54552172 54552194 -65192704 + AT_rich Low_complexity Low_complexity 1 22 0 215 132 38 19 chr13 54552417 54552470 -65192428 + (TTATA)n Simple_repeat Simple_repeat 5 58 0 2398 70 0 3 chr13 54553011 54553313 -65191585 + AluY SINE Alu 3 303 -8 245 325 178 12 chr13 54553459 54553628 -65191270 - MIR SINE MIR -1 261 65 854 275 67 4 chr13 54553741 54553981 -65190917 - MIR SINE MIR -6 256 2 1374 205 55 0 chr13 54555113 54555386 -65189512 - AluJo SINE Alu -24 288 1 5672 225 18 21 chr13 54555513 54555615 -65189283 + L1 LINE L1 1893 1994 -4152 5169 168 22 32 chr13 54555615 54556693 -65188205 - MER11C LTR ERVK -4 1067 1 5672 225 18 21 chr13 54556693 54556789 -65188109 + L1 LINE L1 1994 2089 -4057 192 40 0 0 chr13 54556789 54556814 -65188084 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 5672 225 18 21 chr13 54556814 54558256 -65186642 + L1 LINE L1 2089 3517 -2629 2031 132 95 72 chr13 54558263 54558877 -65186021 + L1MA4A LINE L1 5419 5788 -363 303 28 0 0 chr13 54558692 54558728 -65186170 + (CA)n Simple_repeat Simple_repeat 2 37 0 2253 112 3 12 chr13 54558728 54559055 -65185843 + L1PB1 LINE L1 5792 6117 -34 2618 209 35 5 chr13 54559155 54559748 -65185150 + L1 LINE L1 4671 5281 -865 607 205 66 0 chr13 54559748 54559870 -65185028 + MER54B LTR ERVL 551 680 -113 359 338 15 48 chr13 54560991 54561199 -65183699 - MIR3 SINE MIR -8 200 2 2166 91 7 23 chr13 54562389 54562697 -65182201 - AluY SINE Alu -8 303 1 329 321 123 20 chr13 54562896 54563246 -65181652 - L1MC/D LINE L1 -553 5625 5386 201 94 0 0 chr13 54563463 54563495 -65181403 + (TG)n Simple_repeat Simple_repeat 1 32 0 233 270 71 36 chr13 54564548 54564800 -65180098 + L1MEd LINE L1 940 1200 -4919 246 294 29 10 chr13 54564906 54565008 -65179890 + L1MEd LINE L1 1269 1372 -4759 7821 261 50 21 chr13 54565630 54566276 -65178622 + L1PA13 LINE L1 2 627 -6170 2135 113 41 39 chr13 54566276 54566639 -65178259 + THE1B LTR MaLR 1 364 0 7821 261 50 21 chr13 54566639 54568679 -65176219 + L1PA13 LINE L1 627 2816 -3981 25 0 0 0 chr13 54569024 54569049 -65175849 + AT_rich Low_complexity Low_complexity 1 25 0 2469 48 3 6 chr13 54569056 54569368 -65175530 - AluY SINE Alu 0 311 1 21 0 0 0 chr13 54569994 54570015 -65174883 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr13 54570730 54570770 -65174128 + AT_rich Low_complexity Low_complexity 1 40 0 2440 187 2 2 chr13 54571975 54572371 -65172527 + MER54B LTR ERVL 1 396 -397 3687 203 71 2 chr13 54572371 54573202 -65171696 + L1 LINE L1 3727 4614 -1532 465 262 28 14 chr13 54573202 54573347 -65171551 + MLT1A1 LTR MaLR 170 316 -49 7644 120 162 16 chr13 54573347 54575617 -65169281 + L1PBa LINE L1 12 2553 -4310 465 329 103 59 chr13 54575860 54576464 -65168434 - L2 LINE L2 -20 3293 2661 224 349 12 0 chr13 54577174 54577260 -65167638 - MIR3 SINE MIR -3 205 119 3074 120 17 4 chr13 54577766 54578241 -65166657 - MER41A LTR ERV1 0 554 74 32 26 0 0 chr13 54578895 54578934 -65165964 + AT_rich Low_complexity Low_complexity 1 39 0 2090 199 15 22 chr13 54579640 54580102 -65164796 + MER74C LTR ERVL 2 460 0 22 35 0 0 chr13 54581074 54581103 -65163795 + AT_rich Low_complexity Low_complexity 1 29 0 345 289 132 41 chr13 54581481 54581628 -65163270 + L1MC2 LINE L1 562 694 -5425 312 120 0 0 chr13 54581628 54581678 -65163220 + (CA)n Simple_repeat Simple_repeat 1 50 0 345 289 132 41 chr13 54581678 54582051 -65162847 + L1MC2 LINE L1 694 1110 -5009 3858 224 35 64 chr13 54582873 54583684 -65161214 + L1MC2 LINE L1 4087 4919 -1408 268 57 0 0 chr13 54583684 54583719 -65161179 + MER4E LTR ERV1 654 688 -78 3858 224 35 64 chr13 54583719 54583733 -65161165 + L1MC2 LINE L1 4919 4932 -1395 196 53 53 0 chr13 54583733 54583771 -65161127 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3858 224 35 64 chr13 54583771 54585035 -65159863 + L1MC2 LINE L1 4932 6127 -200 24 0 0 0 chr13 54585212 54585236 -65159662 + AT_rich Low_complexity Low_complexity 1 24 0 192 321 24 12 chr13 54586203 54586287 -65158611 + L2 LINE L2 3229 3313 0 24 0 0 0 chr13 54588740 54588764 -65156134 + AT_rich Low_complexity Low_complexity 1 24 0 4435 203 19 20 chr13 54589772 54591133 -65153765 - L1MB1 LINE L1 -9 6159 4795 643 242 16 26 chr13 54591128 54591322 -65153576 + L1MB1 LINE L1 4594 4785 -1361 * 598 290 25 25 chr13 54591846 54592046 -65152852 - MIR SINE MIR -33 229 30 1248 204 131 6 chr13 54592280 54592623 -65152275 - MLT1B LTR MaLR 0 390 5 2283 206 40 56 chr13 54593095 54593373 -65151525 - MER92B LTR ERV1 0 636 355 1963 80 0 90 chr13 54593373 54593714 -65151184 - AluY SINE Alu 0 313 1 2283 206 40 56 chr13 54593714 54594080 -65150818 - MER92B LTR ERV1 -281 355 1 21 0 0 0 chr13 54595668 54595689 -65149209 + AT_rich Low_complexity Low_complexity 1 21 0 2560 58 0 0 chr13 54595815 54596126 -65148772 - AluY SINE Alu 0 311 1 338 187 16 32 chr13 54596461 54596584 -65148314 + CT-rich Low_complexity Low_complexity 3 123 0 21 36 0 0 chr13 54597292 54597320 -65147578 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr13 54598178 54598205 -65146693 + AT_rich Low_complexity Low_complexity 1 27 0 453 66 0 0 chr13 54599357 54599418 -65145480 + (TG)n Simple_repeat Simple_repeat 2 62 0 840 188 7 0 chr13 54599480 54599629 -65145269 - L1PA16 LINE L1 -13 6153 6004 31 68 0 0 chr13 54599906 54599965 -65144933 + AT_rich Low_complexity Low_complexity 1 59 0 291 284 0 12 chr13 54600296 54600377 -65144521 + CT-rich Low_complexity Low_complexity 5 84 0 3692 192 52 35 chr13 54600403 54601370 -65143528 - L1MB3 LINE L1 -8 6175 5193 397 69 0 94 chr13 54601387 54601468 -65143430 - L1MC/D LINE L1 -749 5423 5364 * 4285 78 44 3 chr13 54601458 54602075 -65142823 + L1P LINE L1 4714 5355 -791 526 264 6 6 chr13 54602083 54602261 -65142637 - L1 LINE L1 -3381 2765 2588 26 50 0 0 chr13 54602605 54602645 -65142253 + AT_rich Low_complexity Low_complexity 1 40 0 44 70 0 0 chr13 54603001 54603087 -65141811 + AT_rich Low_complexity Low_complexity 1 86 0 1988 143 7 0 chr13 54604239 54604533 -65140365 + AluSx SINE Alu 1 296 -16 27 29 0 0 chr13 54604759 54604793 -65140105 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr13 54605250 54605281 -65139617 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr13 54605360 54605389 -65139509 + AT_rich Low_complexity Low_complexity 1 29 0 2337 77 3 13 chr13 54606490 54606801 -65138097 + AluY SINE Alu 4 311 0 1441 183 39 3 chr13 54606823 54607108 -65137790 + AluSx SINE Alu 1 295 -17 332 320 57 35 chr13 54611542 54611770 -65133128 - HAL1 LINE L1 -4 2503 2271 255 33 0 0 chr13 54611884 54611914 -65132984 - L1HS LINE L1 -52 6103 6074 341 65 0 0 chr13 54612103 54612169 -65132729 - AluSc SINE Alu 0 300 235 2044 83 0 0 chr13 54612169 54612433 -65132465 - AluSc SINE Alu -45 264 1 240 263 110 98 chr13 54612433 54612519 -65132379 - HAL1 LINE L1 -963 1544 1461 672 172 51 13 chr13 54612519 54612676 -65132222 - L1MA8 LINE L1 -2 6289 6127 240 263 110 98 chr13 54612676 54612916 -65131982 - HAL1 LINE L1 -1046 1461 1214 33 66 0 0 chr13 54612963 54613024 -65131874 + AT_rich Low_complexity Low_complexity 1 61 0 27 0 0 0 chr13 54614146 54614173 -65130725 + AT_rich Low_complexity Low_complexity 1 27 0 341 289 69 16 chr13 54614640 54614890 -65130008 - L1M4 LINE L1 -650 5524 5258 229 268 57 24 chr13 54615113 54615236 -65129662 + L1ME3A LINE L1 4768 4894 -1252 577 216 60 8 chr13 54616633 54616767 -65128131 - MLT1F1 LTR MaLR 0 567 427 227 335 124 31 chr13 54616916 54617110 -65127788 - L2 LINE L2 -172 3141 2930 2740 212 53 8 chr13 54617155 54617793 -65127105 + LTR65 LTR ERV1 1 667 -2 182 297 227 84 chr13 54618696 54619074 -65125824 + L2 LINE L2 1721 2044 -1270 288 0 0 0 chr13 54619074 54619106 -65125792 + (CA)n Simple_repeat Simple_repeat 2 33 0 182 297 227 84 chr13 54619106 54619440 -65125458 + L2 LINE L2 2044 2535 -779 2117 105 13 19 chr13 54620247 54620562 -65124336 - AluSp SINE Alu 0 313 1 306 315 122 13 chr13 54623056 54623294 -65121604 + L1ME3A LINE L1 5512 5775 -391 1461 195 26 19 chr13 54623350 54623658 -65121240 + AluJo SINE Alu 1 310 -2 453 19 0 0 chr13 54623713 54623767 -65121131 + (TG)n Simple_repeat Simple_repeat 1 54 0 693 242 84 60 chr13 54623771 54624078 -65120820 + L1ME3A LINE L1 5854 6166 0 25 31 0 0 chr13 54624234 54624266 -65120632 + AT_rich Low_complexity Low_complexity 1 32 0 1974 198 52 21 chr13 54624311 54624730 -65120168 - MSTB1 LTR MaLR 0 432 1 22 0 0 0 chr13 54625028 54625050 -65119848 + AT_rich Low_complexity Low_complexity 1 22 0 1427 210 14 20 chr13 54625196 54625491 -65119407 + AluJo SINE Alu 1 293 -19 205 204 23 0 chr13 54625973 54626017 -65118881 + (TATATG)n Simple_repeat Simple_repeat 5 49 0 182 329 0 13 chr13 54626040 54626119 -65118779 + MIR SINE MIR 183 260 -2 1535 199 39 62 chr13 54626356 54626792 -65118106 - MSTC LTR MaLR 0 428 3 21 57 0 0 chr13 54627106 54627141 -65117757 + AT_rich Low_complexity Low_complexity 1 35 0 22 103 0 0 chr13 54628339 54628417 -65116481 + AT_rich Low_complexity Low_complexity 1 78 0 224 345 134 12 chr13 54628640 54628811 -65116087 + MIR SINE MIR 58 249 -13 381 207 0 0 chr13 54628971 54629058 -65115840 + (TA)n Simple_repeat Simple_repeat 1 87 0 1381 157 19 4 chr13 54629060 54629321 -65115577 - HSMAR2 DNA Mariner 0 1302 1038 7389 27 2 0 chr13 54629321 54630196 -65114702 + L1PA4 LINE L1 5278 6154 -1 1146 201 43 109 chr13 54630215 54630583 -65114315 + MLT1A2 LTR MaLR 30 373 -1 369 109 0 0 chr13 54630587 54630651 -65114247 + (CA)n Simple_repeat Simple_repeat 1 64 0 5496 168 50 4 chr13 54630661 54631672 -65113226 + HSMAR2 DNA Mariner 11 1067 -235 7306 30 1 1 chr13 54631672 54632540 -65112358 - L1PA4 LINE L1 -9 6146 5279 1394 157 19 4 chr13 54632540 54632802 -65112096 + HSMAR2 DNA Mariner 1037 1302 0 381 207 0 0 chr13 54632804 54632891 -65112007 + (TA)n Simple_repeat Simple_repeat 1 87 0 224 345 134 12 chr13 54633051 54633222 -65111676 - MIR SINE MIR -13 249 58 2494 108 5 8 chr13 54634462 54634840 -65110058 + L1PA10 LINE L1 5789 6165 -3 22 0 0 0 chr13 54634840 54634862 -65110036 + AT_rich Low_complexity Low_complexity 1 22 0 1343 289 65 14 chr13 54635119 54635777 -65109121 + L1ME3A LINE L1 5296 5987 -183 403 278 116 37 chr13 54635988 54636449 -65108449 + L1MEc LINE L1 2037 2505 -3710 356 297 138 0 chr13 54638078 54638216 -65106682 - LTR67 LTR ERVL -8 549 393 289 260 107 40 chr13 54638712 54638862 -65106036 - MLT1J LTR MaLR -330 181 22 499 281 20 51 chr13 54638886 54639082 -65105816 - LTR67 LTR ERVL -366 191 2 2104 107 10 26 chr13 54639108 54639416 -65105482 - AluSc SINE Alu -6 303 1 1379 357 80 30 chr13 54639417 54640383 -65104515 - L2 LINE L2 -280 3033 2018 734 246 77 16 chr13 54640839 54641087 -65103811 - MLT1F1 LTR MaLR 0 567 305 260 79 26 0 chr13 54641129 54641167 -65103731 - MSTA LTR MaLR 0 428 390 24 77 0 0 chr13 54641889 54641941 -65102957 + AT_rich Low_complexity Low_complexity 1 52 0 182 216 54 0 chr13 54642236 54642273 -65102625 - L2 LINE L2 -8 3305 3267 21 36 0 0 chr13 54642317 54642345 -65102553 + AT_rich Low_complexity Low_complexity 1 28 0 402 311 154 30 chr13 54642425 54642840 -65102058 - L2 LINE L2 -234 3079 2609 2568 89 27 0 chr13 54644239 54644609 -65100289 - L1P4 LINE L1 -500 5668 5289 430 141 54 11 chr13 54644590 54644682 -65100216 - L1P4 LINE L1 -1790 4356 4261 * 596 106 0 0 chr13 54644687 54644781 -65100117 + L1PA2 LINE L1 6061 6154 -1 25 0 0 0 chr13 54645078 54645103 -65099795 + AT_rich Low_complexity Low_complexity 1 25 0 2332 18 0 0 chr13 54645346 54645619 -65099279 + L1P LINE L1 4333 4605 -1541 567 237 60 120 chr13 54645619 54645837 -65099061 + L1MEc LINE L1 3059 3289 -2926 7774 16 0 3 chr13 54645837 54646923 -65097975 - L1PA2 LINE L1 0 6155 5071 567 237 60 120 chr13 54646923 54647236 -65097662 + L1MEc LINE L1 3289 3558 -2657 237 345 137 7 chr13 54647366 54647505 -65097393 - L2 LINE L2 -202 3070 2914 188 163 0 41 chr13 54648189 54648238 -65096660 + CT-rich Low_complexity Low_complexity 2 48 0 195 129 0 0 chr13 54648351 54648382 -65096516 + (TA)n Simple_repeat Simple_repeat 2 32 0 2380 70 0 0 chr13 54649313 54649613 -65095285 + AluY SINE Alu 1 300 -11 348 319 112 59 chr13 54649876 54650104 -65094794 + L3 LINE CR1 898 1153 -424 2483 102 19 11 chr13 54650104 54650476 -65094422 - THE1C LTR MaLR 0 375 1 348 319 112 59 chr13 54650476 54650604 -65094294 + L3 LINE CR1 1153 1273 -304 897 200 17 100 chr13 54650702 54650992 -65093906 - L1ME2 LINE L1 -10 6154 5889 702 288 50 75 chr13 54651141 54651554 -65093344 - MLT1G3 LTR MaLR -106 436 18 1701 239 58 6 chr13 54651573 54652195 -65092703 - L1ME2 LINE L1 -399 5765 5113 6080 219 31 50 chr13 54652462 54655238 -65089660 + L1MA4 LINE L1 3161 5986 -314 2107 74 0 0 chr13 54655238 54655496 -65089402 + AluY SINE Alu 44 301 -10 6080 219 31 50 chr13 54655496 54655669 -65089229 + L1MA4 LINE L1 5986 5945 -355 2836 112 21 0 chr13 54655669 54656088 -65088810 + L1PA10 LINE L1 5729 6156 -12 6080 219 31 50 chr13 54656088 54656435 -65088463 + L1MA4 LINE L1 5944 6296 -4 1546 194 7 4 chr13 54656513 54656814 -65088084 - AluJo SINE Alu 0 314 13 413 290 22 0 chr13 54656858 54656996 -65087902 + L1MC4a LINE L1 6728 6868 -940 192 40 0 0 chr13 54657181 54657206 -65087692 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 347 330 9 0 chr13 54657272 54657384 -65087514 + L1MC4a LINE L1 7320 7432 -376 2014 119 6 19 chr13 54657790 54658102 -65086796 + AluSg SINE Alu 1 308 -2 218 344 138 41 chr13 54658479 54658732 -65086166 - L2 LINE L2 -735 2579 2352 1838 182 93 13 chr13 54658732 54659128 -65085770 + MSTA LTR MaLR 1 428 0 7945 183 41 22 chr13 54659128 54660445 -65084453 + MSTA-int LTR MaLR 1 1357 -294 2557 44 0 0 chr13 54660445 54660739 -65084159 + AluY SINE Alu 6 299 -12 7945 183 41 22 chr13 54660739 54661040 -65083858 + MSTA-int LTR MaLR 1357 1651 0 1832 187 81 30 chr13 54661040 54661447 -65083451 + MSTA LTR MaLR 1 428 0 218 344 138 41 chr13 54661447 54661531 -65083367 - L2 LINE L2 -961 2353 2207 405 304 70 6 chr13 54661560 54661718 -65083180 + MIR SINE MIR 12 179 -83 11508 228 47 43 chr13 54661797 54663833 -65081065 - L1MA7 LINE L1 0 6527 4501 321 26 0 0 chr13 54663833 54663871 -65081027 + (TA)n Simple_repeat Simple_repeat 1 38 0 11508 228 47 43 chr13 54663871 54667865 -65077033 - L1MA7 LINE L1 -2026 4501 821 313 289 10 29 chr13 54667949 54668053 -65076845 - L1MA7 LINE L1 -5839 464 363 24 32 0 0 chr13 54668357 54668388 -65076510 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 54669148 54669171 -65075727 + AT_rich Low_complexity Low_complexity 1 23 0 191 156 44 0 chr13 54670160 54670205 -65074693 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 2207 235 48 27 chr13 54673010 54673631 -65071267 - MER92B LTR ERV1 0 636 3 2245 175 52 28 chr13 54673731 54674234 -65070664 - L1 LINE L1 -1304 4842 4328 2902 182 53 3 chr13 54674235 54674878 -65070020 + L1MA8 LINE L1 5612 6286 -5 937 281 89 49 chr13 54675945 54676439 -65068459 + L1MEc LINE L1 23 536 -5860 198 0 0 0 chr13 54676532 54676554 -65068344 + (CAA)n Simple_repeat Simple_repeat 2 23 0 875 161 103 0 chr13 54676838 54676993 -65067905 - Tigger5 DNA MER2_type 0 2323 2153 583 196 27 0 chr13 54676986 54677098 -65067800 - Tigger5 DNA MER2_type -2206 117 3 * 2158 161 24 43 chr13 54677213 54677635 -65067263 - L1MB1 LINE L1 -354 5814 5401 2123 126 21 21 chr13 54677635 54678015 -65066883 + L1MB1 LINE L1 5787 6167 -1 290 362 64 21 chr13 54678300 54678441 -65066457 - L2 LINE L2 -926 2388 2242 1459 105 5 14 chr13 54678558 54678768 -65066130 + AluSg/x SINE Alu 94 301 -9 474 74 123 0 chr13 54678768 54678849 -65066049 - MLT2A2 LTR ERVL -362 91 1 752 270 48 0 chr13 54678860 54679049 -65065849 + MLT1E2 LTR MaLR 429 626 0 27 0 0 0 chr13 54679206 54679233 -65065665 + AT_rich Low_complexity Low_complexity 1 27 0 663 132 16 8 chr13 54679610 54679739 -65065159 + CT-rich Low_complexity Low_complexity 4 133 0 192 77 0 0 chr13 54679751 54679777 -65065121 + (TC)n Simple_repeat Simple_repeat 1 26 0 919 232 13 90 chr13 54680323 54680633 -65064265 - MLT2B1 LTR ERVL 0 534 283 274 271 17 0 chr13 54680640 54680699 -65064199 + AluSp SINE Alu 136 195 -108 495 320 76 32 chr13 54680909 54681159 -65063739 - MIR SINE MIR -1 261 1 2370 236 24 58 chr13 54681608 54682234 -65062664 - MER77 LTR ERV1 0 605 1 235 227 0 0 chr13 54682823 54682867 -65062031 + (CA)n Simple_repeat Simple_repeat 2 45 0 668 320 84 18 chr13 54683227 54683665 -65061233 + HAL1b LINE L1 94 560 -788 315 0 0 0 chr13 54684153 54684188 -65060710 + (TG)n Simple_repeat Simple_repeat 2 36 0 1394 129 18 0 chr13 54684318 54684535 -65060363 - Tigger5 DNA MER2_type -7 2316 2096 427 213 0 0 chr13 54684540 54684615 -65060283 - Tigger5 DNA MER2_type -2242 81 7 270 379 89 6 chr13 54684843 54685012 -65059886 - MIR SINE MIR -74 188 6 312 197 30 0 chr13 54685160 54685226 -65059672 + L1MC4 LINE L1 6636 6703 -1339 28 0 0 0 chr13 54687155 54687183 -65057715 + AT_rich Low_complexity Low_complexity 1 28 0 264 30 0 0 chr13 54687373 54687406 -65057492 + (CA)n Simple_repeat Simple_repeat 2 34 0 456 301 90 74 chr13 54687406 54688096 -65056802 + L1MC4a LINE L1 4665 5372 -774 2201 116 0 0 chr13 54688096 54688406 -65056492 + AluSg SINE Alu 1 310 0 456 301 90 74 chr13 54688406 54688438 -65056460 + L1MC4a LINE L1 5372 5402 -744 592 318 100 24 chr13 54688447 54688915 -65055983 + L1MC4a LINE L1 5430 5933 -1875 334 360 108 20 chr13 54689337 54689540 -65055358 - L2 LINE L2 -478 2836 2616 776 240 20 10 chr13 54689549 54689745 -65055153 - MER92B LTR ERV1 -10 626 429 1255 222 29 98 chr13 54689861 54690351 -65054547 - MER92B LTR ERV1 -180 456 1 842 303 109 75 chr13 54690379 54691547 -65053351 - L2 LINE L2 0 3313 2132 202 328 90 0 chr13 54691948 54692070 -65052828 - MIR SINE MIR -10 252 120 333 281 0 11 chr13 54692269 54692358 -65052540 - MIR SINE MIR -11 251 164 2295 190 5 14 chr13 54692482 54692909 -65051989 - MSTB LTR MaLR 0 426 4 8689 188 13 7 chr13 54692912 54694553 -65050345 - MSTB-int LTR MaLR 0 1651 1 2344 179 9 19 chr13 54694553 54694983 -65049915 - MSTB LTR MaLR 0 426 1 292 246 0 0 chr13 54694992 54695049 -65049849 - MIR SINE MIR -123 139 83 25 0 0 0 chr13 54696324 54696349 -65048549 + AT_rich Low_complexity Low_complexity 1 25 0 213 108 0 0 chr13 54696551 54696588 -65048310 + (TG)n Simple_repeat Simple_repeat 1 37 0 323 394 41 35 chr13 54696988 54697328 -65047570 - MLT1K LTR MaLR -112 476 135 192 329 40 26 chr13 54698172 54698248 -65046650 + MIR SINE MIR 37 113 -95 23 68 0 0 chr13 54699184 54699228 -65045670 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 54700536 54700557 -65044341 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 54700764 54700795 -65044103 + AT_rich Low_complexity Low_complexity 1 31 0 182 128 26 0 chr13 54702774 54702813 -65042085 + (TA)n Simple_repeat Simple_repeat 2 41 0 5010 25 0 0 chr13 54702857 54703759 -65041139 + L1P2 LINE L1 4804 5705 -450 1291 203 43 21 chr13 54704043 54704324 -65040574 + AluJo SINE Alu 1 287 -25 2892 189 23 12 chr13 54705450 54706097 -65038801 - L1MA3 LINE L1 0 6305 5652 797 130 14 22 chr13 54706114 54706336 -65038562 + CT-rich Low_complexity Low_complexity 1 220 0 1565 181 18 36 chr13 54706342 54706678 -65038220 - L1MA3 LINE L1 -641 5664 5335 1540 176 40 5 chr13 54706674 54707208 -65037690 + L1M1 LINE L1 3325 3876 -3689 * 22 0 0 0 chr13 54708840 54708862 -65036036 + AT_rich Low_complexity Low_complexity 1 22 0 226 238 0 0 chr13 54708972 54709014 -65035884 + (TG)n Simple_repeat Simple_repeat 2 43 0 356 131 0 0 chr13 54709300 54709361 -65035537 - L1MA1 LINE L1 0 6302 6242 548 239 69 0 chr13 54710128 54710258 -65034640 - MLT1A2 LTR MaLR -235 139 1 25 31 0 0 chr13 54710738 54710770 -65034128 + AT_rich Low_complexity Low_complexity 1 32 0 2344 167 68 9 chr13 54712458 54712896 -65032002 + LTR24 LTR ERV1 4 467 0 23 0 0 0 chr13 54714672 54714695 -65030203 + AT_rich Low_complexity Low_complexity 1 23 0 459 216 34 0 chr13 54715977 54716065 -65028833 - Tigger7 DNA MER2_type -6 2481 2391 836 285 47 27 chr13 54716066 54716180 -65028718 - Tigger7 DNA MER2_type -287 263 153 1750 129 97 26 chr13 54716180 54716530 -65028368 + THE1C LTR MaLR 1 375 0 836 285 47 27 chr13 54716530 54716671 -65028227 - Tigger7 DNA MER2_type -397 153 3 634 308 45 30 chr13 54716912 54717308 -65027590 - LTR16B LTR ERVL 0 464 63 450 200 61 0 chr13 54718432 54718547 -65026351 + LTR37A LTR ERV1 92 213 -213 278 196 54 11 chr13 54718728 54718820 -65026078 + LTR37A LTR ERV1 320 415 -11 234 371 34 51 chr13 54718929 54719107 -65025791 - L2 LINE L2 -1 3271 3097 1945 204 53 47 chr13 54719242 54719798 -65025100 + MER34B LTR ERV1 10 541 -24 231 349 64 0 chr13 54719922 54720044 -65024854 - MIR SINE MIR -63 145 25 647 229 82 33 chr13 54720168 54720196 -65024702 - MLT1B LTR MaLR -7 383 358 3217 200 10 8 chr13 54720196 54720817 -65024081 - LTR26E LTR ERV1 0 622 1 647 229 82 33 chr13 54720817 54720971 -65023927 - MLT1B LTR MaLR -32 358 192 715 237 58 0 chr13 54721166 54721305 -65023593 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr13 54721309 54721331 -65023567 + (TAA)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr13 54722113 54722136 -65022762 + AT_rich Low_complexity Low_complexity 1 23 0 209 211 0 19 chr13 54723347 54723399 -65021499 + GA-rich Low_complexity Low_complexity 2 52 0 801 138 5 122 chr13 54723504 54723692 -65021206 + MER21B LTR ERV1 330 495 -368 229 278 62 42 chr13 54724381 54724525 -65020373 + HAL1b LINE L1 161 307 -1041 640 169 0 8 chr13 54725418 54725536 -65019362 + MLT2C1 LTR ERVL 21 137 -260 1391 316 151 9 chr13 54726450 54727253 -65017645 - L2 LINE L2 -1151 2163 1247 416 301 93 31 chr13 54727301 54727560 -65017338 - L2 LINE L2 -2366 948 674 2150 100 3 7 chr13 54728532 54728833 -65016065 + AluSp SINE Alu 1 300 -13 238 336 159 44 chr13 54729182 54729408 -65015490 + L2 LINE L2 2986 3237 -35 12336 226 55 25 chr13 54729601 54729954 -65014944 - L1MA4 LINE L1 -2 7717 7376 2426 50 3 0 chr13 54729954 54730255 -65014643 - AluY SINE Alu -9 302 1 12336 226 55 25 chr13 54730255 54734037 -65010861 - L1MA4 LINE L1 -343 7376 3707 351 0 0 0 chr13 54734037 54734076 -65010822 + (TG)n Simple_repeat Simple_repeat 2 40 0 12336 226 55 25 chr13 54734076 54736756 -65008142 - L1MA4 LINE L1 -4012 3707 15 200 363 62 26 chr13 54737205 54737318 -65007580 + L2 LINE L2 3149 3265 -7 23 33 0 0 chr13 54737365 54737395 -65007503 + AT_rich Low_complexity Low_complexity 1 30 0 1505 116 9 5 chr13 54738203 54738419 -65006479 - AluSq SINE Alu -96 217 1 2200 120 37 3 chr13 54738419 54738769 -65006129 - L1MA5A LINE L1 -328 5969 5608 1731 159 22 0 chr13 54738769 54739084 -65005814 + L1MA5A LINE L1 5299 5620 -677 727 71 0 20 chr13 54739086 54739185 -65005713 + AluSg SINE Alu 34 130 -180 37451 78 6 12 chr13 54739207 54744338 -65000560 + L1P LINE L1 11 5107 -1039 26 50 0 0 chr13 54744438 54744478 -65000420 + AT_rich Low_complexity Low_complexity 1 40 0 216 0 0 0 chr13 54746010 54746034 -64998864 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 258 105 0 0 chr13 54746434 54746472 -64998426 + (CA)n Simple_repeat Simple_repeat 2 39 0 27 0 0 0 chr13 54746662 54746689 -64998209 + AT_rich Low_complexity Low_complexity 1 27 0 927 328 114 12 chr13 54746905 54747404 -64997494 + MLT1H1 LTR MaLR 33 545 -10 538 311 143 66 chr13 54747415 54748018 -64996880 + L2 LINE L2 1536 2242 -1072 210 91 0 0 chr13 54748018 54748051 -64996847 + (TG)n Simple_repeat Simple_repeat 2 34 0 538 311 143 66 chr13 54748051 54748408 -64996490 + L2 LINE L2 2242 2570 -744 882 263 62 41 chr13 54748585 54749122 -64995776 - L1MDa LINE L1 -1709 4831 4284 1449 257 104 25 chr13 54749165 54749403 -64995495 - L1MDa LINE L1 -3152 3388 3170 760 187 0 0 chr13 54749403 54749542 -64995356 - L1PA16 LINE L1 0 6166 6028 1449 257 104 25 chr13 54749542 54750346 -64994552 - L1MDa LINE L1 -3370 3170 2267 633 252 76 26 chr13 54750526 54750828 -64994070 - L1MDa LINE L1 -4484 2056 1740 219 250 0 0 chr13 54750881 54750941 -64993957 + T-rich Low_complexity Low_complexity 1 60 0 1977 140 48 28 chr13 54751211 54751568 -64993330 - THE1B LTR MaLR 0 364 1 203 0 37 0 chr13 54751606 54751633 -64993265 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 704 356 53 13 chr13 54751852 54752275 -64992623 - L2 LINE L2 -8 3264 2390 287 300 0 0 chr13 54752302 54752392 -64992506 - L1M4 LINE L1 -3673 2473 2384 243 239 14 14 chr13 54752496 54752567 -64992331 - L1M4 LINE L1 -3748 2398 2328 1845 150 4 0 chr13 54752602 54752876 -64992022 - AluSx SINE Alu -30 282 8 988 201 36 22 chr13 54752889 54753113 -64991785 - AluJo SINE Alu -4 308 82 237 235 0 0 chr13 54753114 54753182 -64991716 - L1M4 LINE L1 -3828 2318 2251 761 251 185 46 chr13 54753226 54753724 -64991174 - L2 LINE L2 -1551 1763 1197 7131 297 42 16 chr13 54755247 54758237 -64986661 - ERVL-C1 LTR ERVL -2604 3160 1 333 305 22 35 chr13 54758237 54758376 -64986522 - MLT2C1 LTR ERVL 0 663 269 816 224 26 39 chr13 54758450 54758682 -64986216 - MLT2C1 LTR ERVL -168 229 1 1345 151 0 5 chr13 54759360 54759579 -64985319 + AluSc SINE Alu 82 299 -10 441 169 0 0 chr13 54760792 54760875 -64984023 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 23 33 0 0 chr13 54761005 54761035 -64983863 + AT_rich Low_complexity Low_complexity 1 30 0 36 62 0 0 chr13 54761118 54761182 -64983716 + AT_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chr13 54761271 54761294 -64983604 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr13 54762897 54762933 -64981965 + AT_rich Low_complexity Low_complexity 1 36 0 1737 211 87 11 chr13 54762993 54763373 -64981525 + L1P3 LINE L1 36 444 -5431 1404 216 22 8 chr13 54763394 54763764 -64981134 + L1MA5 LINE L1 4844 5218 -928 2087 93 7 20 chr13 54763843 54764143 -64980755 + AluSg SINE Alu 1 296 -14 3083 139 23 22 chr13 54764176 54764803 -64980095 + L1MA5 LINE L1 5226 5854 -449 9375 169 38 15 chr13 54764905 54767508 -64977390 - L1MA3 LINE L1 -380 5925 3260 914 126 21 7 chr13 54767511 54767654 -64977244 - AluSg/x SINE Alu -8 302 158 806 80 0 0 chr13 54767754 54767854 -64977044 - AluSq/x SINE Alu -206 106 7 8923 126 28 33 chr13 54767856 54769264 -64975634 - L1M1 LINE L1 -3924 3641 2252 1496 209 7 3 chr13 54769264 54769560 -64975338 + AluJb SINE Alu 1 297 -15 8923 126 28 33 chr13 54769560 54769796 -64975102 - L1M1 LINE L1 -5313 2252 2016 680 144 8 76 chr13 54769790 54769922 -64974976 + L1M1 LINE L1 481 603 -6962 * 478 134 49 0 chr13 54769928 54770010 -64974888 - L1M1 LINE L1 -5551 2014 1929 1983 124 0 3 chr13 54770518 54770823 -64974075 + AluSx SINE Alu 1 304 0 1160 221 38 49 chr13 54771308 54771675 -64973223 - MLT1A1 LTR MaLR -2 363 1 27 0 0 0 chr13 54772327 54772354 -64972544 + AT_rich Low_complexity Low_complexity 1 27 0 1027 130 38 55 chr13 54772520 54772758 -64972140 + L1MA5 LINE L1 6067 6300 0 321 266 13 0 chr13 54772914 54772993 -64971905 - MLT1J2 LTR MaLR -307 143 64 471 289 39 61 chr13 54775048 54775228 -64969670 - LTR16C LTR ERVL -16 475 300 28 29 0 0 chr13 54775658 54775693 -64969205 + AT_rich Low_complexity Low_complexity 1 35 0 414 233 86 127 chr13 54776641 54776902 -64967996 + Charlie1 DNA MER1_type 2180 2478 -283 487 77 0 0 chr13 54776902 54776967 -64967931 - MADE1 DNA Mariner -15 65 1 414 233 86 127 chr13 54776967 54777152 -64967746 + Charlie1 DNA MER1_type 2478 2669 -92 1322 310 91 9 chr13 54777152 54777688 -64967210 - L1MDa LINE L1 -5807 733 154 22 56 0 0 chr13 54777830 54777866 -64967032 + AT_rich Low_complexity Low_complexity 1 36 0 1312 241 30 6 chr13 54778921 54779253 -64965645 - MER58B DNA MER1_type -1 340 1 186 43 0 0 chr13 54779545 54779568 -64965330 + (CAA)n Simple_repeat Simple_repeat 2 24 0 351 332 59 40 chr13 54779968 54780342 -64964556 - L1ME4a LINE L1 -205 5916 5536 3130 70 2 41 chr13 54780448 54780888 -64964010 + LTR17 LTR ERV1 358 780 0 3054 221 42 11 chr13 54780888 54781537 -64963361 + L1MA9 LINE L1 5489 6167 -145 198 118 0 0 chr13 54781537 54781571 -64963327 + (CA)n Simple_repeat Simple_repeat 1 34 0 3054 221 42 11 chr13 54781571 54781683 -64963215 + L1MA9 LINE L1 6167 6274 -38 1130 234 60 18 chr13 54781831 54782113 -64962785 - AluJo SINE Alu -8 294 1 186 206 111 16 chr13 54782217 54782280 -64962618 - MIR SINE MIR -110 152 84 2731 16 0 3 chr13 54782612 54782976 -64961922 + AluY SINE Alu 1 363 0 188 347 116 0 chr13 54783341 54783436 -64961462 + L2 LINE L2 2957 3062 -251 695 276 14 14 chr13 54784040 54784261 -64960637 - L1MEc LINE L1 -4555 1841 1621 1488 241 25 44 chr13 54784276 54784683 -64960215 + MSTB1 LTR MaLR 1 399 -33 1445 146 11 58 chr13 54784683 54784958 -64959940 - AluSx SINE Alu -12 300 39 286 27 27 0 chr13 54784959 54784996 -64959902 + MSTB1 LTR MaLR 395 432 0 30 0 0 0 chr13 54785019 54785049 -64959849 + AT_rich Low_complexity Low_complexity 1 30 0 2348 67 0 29 chr13 54785098 54785413 -64959485 - AluY SINE Alu -3 308 3 248 375 27 9 chr13 54785689 54785801 -64959097 - MER81 DNA DNA 0 114 1 2998 282 51 19 chr13 54785803 54787007 -64957891 - L1MEc LINE L1 -5125 1271 30 2185 120 3 0 chr13 54787071 54787370 -64957528 + AluSp SINE Alu 1 300 -13 413 297 39 28 chr13 54787900 54788082 -64956816 + MLT1J LTR MaLR 28 211 -300 357 364 42 21 chr13 54788372 54788608 -64956290 - L2 LINE L2 -673 2641 2401 263 59 0 0 chr13 54789732 54789766 -64955132 + HERVL LTR ERVL 238 271 -5383 183 42 0 0 chr13 54790471 54790495 -64954403 + (TA)n Simple_repeat Simple_repeat 2 25 0 2026 130 10 0 chr13 54790547 54790855 -64954043 + AluSx SINE Alu 1 311 -1 2287 274 80 10 chr13 54791202 54792224 -64952674 - L1MD1 LINE L1 -157 6085 4871 396 0 0 0 chr13 54792679 54792723 -64952175 + (TG)n Simple_repeat Simple_repeat 2 45 0 26 30 0 0 chr13 54792890 54792923 -64951975 + AT_rich Low_complexity Low_complexity 1 33 0 6104 250 15 9 chr13 54793195 54795245 -64949653 - L1PA13 LINE L1 -2877 3920 1835 1906 132 0 0 chr13 54795245 54795511 -64949387 - AluSc SINE Alu -8 301 36 6104 250 15 9 chr13 54795511 54796060 -64948838 - L1PA13 LINE L1 -4962 1835 1291 181 304 0 0 chr13 54796276 54796322 -64948576 + MIR SINE MIR 206 251 -11 24 0 0 0 chr13 54797585 54797609 -64947289 + AT_rich Low_complexity Low_complexity 1 24 0 2109 187 15 15 chr13 54797764 54798165 -64946733 + MSTA LTR MaLR 28 428 0 452 217 28 0 chr13 54798349 54798455 -64946443 - MER3 DNA MER1_type -68 141 33 1380 325 30 23 chr13 54798557 54799252 -64945646 - ERVL LTR ERVL -2501 3263 2564 8328 194 32 14 chr13 54799252 54801924 -64942974 - L1PA15 LINE L1 -77 6088 3380 607 117 0 19 chr13 54802024 54802127 -64942771 - MER2 DNA MER2_type -154 191 91 * 728 258 21 0 chr13 54802117 54802303 -64942595 + MLT1B LTR MaLR 201 390 0 27 29 0 0 chr13 54803951 54803985 -64940913 + AT_rich Low_complexity Low_complexity 1 34 0 25820 36 1 4 chr13 54804370 54807571 -64937327 - L1P LINE L1 -1267 4879 1690 21 0 0 0 chr13 54808222 54808243 -64936655 + AT_rich Low_complexity Low_complexity 1 21 0 416 226 170 0 chr13 54808969 54809075 -64935823 + MER6 DNA MER2_type 1 124 -741 330 187 0 53 chr13 54809062 54809137 -64935761 + MER52A LTR ERV1 1511 1581 -174 * 311 277 25 38 chr13 54809295 54809442 -64935456 - L1MC4 LINE L1 -1070 6942 6778 652 195 0 0 chr13 54809473 54809591 -64935307 + FLAM_C SINE Alu 1 118 -15 180 0 0 0 chr13 54809596 54809616 -64935282 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2514 111 22 3 chr13 54810209 54810577 -64934321 + THE1C LTR MaLR 1 375 0 9189 133 39 42 chr13 54810577 54812162 -64932736 + THE1C-int LTR MaLR 1 1580 0 2374 120 27 3 chr13 54812162 54812528 -64932370 + THE1C LTR MaLR 1 375 0 733 168 0 30 chr13 54812723 54812854 -64932044 - MSTA LTR MaLR -301 127 1 8633 186 22 17 chr13 54812854 54814496 -64930402 - MSTA-int LTR MaLR 0 1651 1 2346 149 52 2 chr13 54814496 54814904 -64929994 - MSTA LTR MaLR 0 428 1 512 263 26 0 chr13 54815262 54815376 -64929522 - MER45A DNA AcHobo -1 177 61 209 398 37 37 chr13 54816992 54817261 -64927637 - L2 LINE L2 -2626 688 420 2364 138 48 12 chr13 54817346 54817758 -64927140 - MSTA LTR MaLR 0 428 2 306 306 0 0 chr13 54817883 54817955 -64926943 + L2 LINE L2 3241 3312 -1 396 363 21 31 chr13 54818884 54819077 -64925821 - MIR3 SINE MIR 0 208 18 4912 46 9 0 chr13 54819161 54819790 -64925108 - L1P LINE L1 -2983 3163 2529 * 8366 56 0 2 chr13 54819788 54820854 -64924044 + L1P LINE L1 3176 4239 -1907 414 39 0 0 chr13 54822051 54822103 -64922795 + (TA)n Simple_repeat Simple_repeat 1 52 0 189 0 0 0 chr13 54822102 54822123 -64922775 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 38 51 0 0 chr13 54822324 54822383 -64922515 + AT_rich Low_complexity Low_complexity 1 59 0 389 247 8 142 chr13 54822451 54822690 -64922208 - MIR SINE MIR -50 212 6 36 82 0 0 chr13 54823741 54823826 -64921072 + AT_rich Low_complexity Low_complexity 1 85 0 24 0 0 0 chr13 54823917 54823941 -64920957 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 54824020 54824042 -64920856 + AT_rich Low_complexity Low_complexity 1 22 0 180 333 181 28 chr13 54824587 54824731 -64920167 - MIR3 SINE MIR -4 204 39 516 101 11 22 chr13 54825505 54825594 -64919304 - L1PA16 LINE L1 -3 6163 6076 21 0 0 0 chr13 54825906 54825927 -64918971 + AT_rich Low_complexity Low_complexity 1 21 0 219 139 0 47 chr13 54826112 54826155 -64918743 - L2 LINE L2 0 3313 3273 6951 208 61 13 chr13 54826637 54828358 -64916540 - L1P LINE L1 -1638 4508 2705 216 308 55 55 chr13 54828380 54828471 -64916427 + L2 LINE L2 3215 3305 -8 1818 150 40 35 chr13 54829684 54830057 -64914841 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr13 54830316 54830351 -64914547 + AT_rich Low_complexity Low_complexity 1 35 0 276 146 97 165 chr13 54831185 54831288 -64913610 + MER58 DNA MER1_type 4 99 -2321 422 233 10 10 chr13 54831299 54831402 -64913496 + MER58 DNA MER1_type 2318 2420 0 23 0 0 0 chr13 54831875 54831898 -64913000 + AT_rich Low_complexity Low_complexity 1 23 0 614 302 47 0 chr13 54831910 54832200 -64912698 + L1M4c LINE L1 2372 2682 -3700 * 1626 293 26 23 chr13 54832183 54832445 -64912453 + L1M4c LINE L1 2582 2842 -3540 2206 93 0 0 chr13 54832445 54832735 -64912163 + AluSx SINE Alu 1 290 -22 1626 293 26 23 chr13 54832735 54833172 -64911726 + L1M4c LINE L1 2842 3283 -3099 1664 153 23 39 chr13 54833193 54833501 -64911397 + AluSx SINE Alu 1 303 -9 2036 232 20 52 chr13 54833507 54834159 -64910739 + L1M4c LINE L1 3441 4071 -2311 495 246 99 0 chr13 54834323 54834368 -64910530 - L1MA10 LINE L1 -3 6331 6252 294 29 0 0 chr13 54834368 54834403 -64910495 + (TA)n Simple_repeat Simple_repeat 2 36 0 1759 269 50 35 chr13 54834403 54835858 -64909040 - L1ME1 LINE L1 -50 6116 4608 864 213 11 11 chr13 54836251 54836439 -64908459 + Tigger6 DNA MER2_type 6 193 -1404 13725 98 31 3 chr13 54836544 54838458 -64906440 - HERVL LTR ERVL -1824 3830 1863 328 323 53 58 chr13 54838549 54838775 -64906123 - MIR SINE MIR -36 226 2 7622 153 29 8 chr13 54840712 54842008 -64902890 - Tigger1 DNA MER2_type -1074 1344 23 21 0 0 0 chr13 54843573 54843594 -64901304 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr13 55043916 55043944 -64700954 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2219 69 7 0 chr13 55043946 55044222 -64700676 - AluY SINE Alu -33 278 1 446 210 97 85 chr13 55044484 55044595 -64700303 + MLT2F LTR ERVL 486 601 -62 189 74 0 0 chr13 55044595 55044622 -64700276 + (CATA)n Simple_repeat Simple_repeat 4 30 0 446 210 97 85 chr13 55044622 55044686 -64700212 + MLT2F LTR ERVL 601 663 0 856 222 13 13 chr13 55045269 55045499 -64699399 + L1M4 LINE L1 4308 4537 -1609 1234 194 66 36 chr13 55046097 55046416 -64698482 - MLT1A1 LTR MaLR -21 369 1 21 57 0 0 chr13 55047716 55047751 -64697147 + AT_rich Low_complexity Low_complexity 1 35 0 486 295 65 37 chr13 55047935 55048265 -64696633 + L1MC4 LINE L1 6630 6961 -1000 339 280 73 38 chr13 55048496 55048757 -64696141 + L1MC4a LINE L1 7144 7413 -395 2228 105 0 0 chr13 55048798 55049092 -64695806 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr13 55049176 55049200 -64695698 + AT_rich Low_complexity Low_complexity 1 24 0 240 214 0 18 chr13 55049353 55049409 -64695489 + GA-rich Low_complexity Low_complexity 4 58 0 1738 132 55 66 chr13 55049763 55050142 -64694756 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr13 55051824 55051852 -64693046 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 55052208 55052236 -64692662 + AT_rich Low_complexity Low_complexity 1 28 0 205 303 73 46 chr13 55052767 55052876 -64692022 + MIR3 SINE MIR 72 183 -25 24 0 0 0 chr13 55053694 55053718 -64691180 + AT_rich Low_complexity Low_complexity 1 24 0 769 157 29 0 chr13 55053827 55053967 -64690931 - L1MA9 LINE L1 -1 6311 6168 414 0 0 0 chr13 55053967 55054013 -64690885 + (TG)n Simple_repeat Simple_repeat 1 46 0 1926 101 56 7 chr13 55054118 55054404 -64690494 + AluSq SINE Alu 1 300 -13 864 181 119 0 chr13 55054559 55054752 -64690146 - L1MA9 LINE L1 -201 6111 5896 213 326 58 0 chr13 55055326 55055412 -64689486 + MIR SINE MIR 49 139 -123 27 62 0 0 chr13 55055540 55055588 -64689310 + AT_rich Low_complexity Low_complexity 1 48 0 4323 171 14 21 chr13 55056055 55056854 -64688044 - MER54B LTR ERVL 0 793 1 35 24 0 0 chr13 55057559 55057601 -64687297 + AT_rich Low_complexity Low_complexity 1 42 0 1878 133 7 3 chr13 55057667 55057952 -64686946 + AluSx SINE Alu 1 286 -26 208 176 20 0 chr13 55058603 55058654 -64686244 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 289 244 26 13 chr13 55058798 55058876 -64686022 - MLT1L LTR MaLR -530 85 7 1075 224 7 17 chr13 55059671 55059939 -64684959 + L1MCa LINE L1 1640 1890 -4494 1469 283 70 13 chr13 55060060 55060672 -64684226 - L1M4c LINE L1 -4511 1873 1227 1323 193 46 39 chr13 55060673 55060958 -64683940 - AluJo SINE Alu -20 292 6 1261 263 21 18 chr13 55060962 55061528 -64683370 - L1M3c LINE L1 -4658 1483 826 26 0 0 0 chr13 55061763 55061789 -64683109 + AT_rich Low_complexity Low_complexity 1 26 0 3173 79 7 11 chr13 55061789 55062244 -64682654 - L1PA8 LINE L1 0 6172 5720 9764 99 5 1 chr13 55062244 55063913 -64680985 + L1P3 LINE L1 3952 5624 -530 2434 113 49 24 chr13 55064337 55064763 -64680135 - LTR23 LTR ERV1 0 437 1 26 30 0 0 chr13 55065238 55065271 -64679627 + AT_rich Low_complexity Low_complexity 1 33 0 1649 178 168 11 chr13 55065532 55065902 -64678996 + MSTA LTR MaLR 1 428 0 8628 171 12 20 chr13 55065904 55067495 -64677403 + MSTA-int LTR MaLR 3 1580 0 1725 176 122 13 chr13 55067495 55067881 -64677017 + MSTA LTR MaLR 1 428 0 852 274 111 33 chr13 55069119 55069481 -64675417 - LTR16A1 LTR ERVL -12 445 56 847 172 16 11 chr13 55070003 55070189 -64674709 - MER53 DNA DNA -2 187 1 1073 119 0 34 chr13 55071333 55071510 -64673388 - AluY SINE Alu 0 311 141 915 118 30 0 chr13 55071949 55072118 -64672780 + CT-rich Low_complexity Low_complexity 1 174 0 1188 61 11 22 chr13 55072118 55072298 -64672600 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 7055 43 6 0 chr13 55072602 55073480 -64671418 + L1PA4 LINE L1 5272 6154 -1 250 354 30 15 chr13 55073928 55074126 -64670772 + HAL1 LINE L1 1472 1672 -835 22 94 0 0 chr13 55074603 55074667 -64670231 + AT_rich Low_complexity Low_complexity 1 64 0 31 0 0 0 chr13 55075538 55075569 -64669329 + AT_rich Low_complexity Low_complexity 1 31 0 300 300 56 22 chr13 55075917 55076097 -64668801 + L1M4 LINE L1 4974 5159 -987 1107 185 5 40 chr13 55076138 55076360 -64668538 - AluJo SINE Alu -98 214 1 686 169 0 52 chr13 55077321 55077457 -64667441 - MLT1B LTR MaLR -261 129 1 239 298 131 0 chr13 55077627 55077711 -64667187 + MER5B DNA MER1_type 4 98 -80 485 301 45 49 chr13 55078110 55078376 -64666522 + MLT1J LTR MaLR 2 266 -245 22 35 0 0 chr13 55078697 55078726 -64666172 + AT_rich Low_complexity Low_complexity 1 29 0 221 360 47 59 chr13 55079716 55079896 -64665002 - MIR SINE MIR 0 262 84 1967 160 8 39 chr13 55079896 55080283 -64664615 - THE1C LTR MaLR 0 375 1 221 360 47 59 chr13 55080283 55080355 -64664543 - MIR SINE MIR -178 84 13 967 226 5 18 chr13 55080505 55080722 -64664176 + MER58A DNA MER1_type 1 214 -10 696 264 61 4 chr13 55080790 55081036 -64663862 + MER69 DNA AcHobo 2102 2361 -165 3986 158 23 18 chr13 55082781 55082847 -64662051 + MER50 LTR ERV1 1 65 -669 1801 203 32 7 chr13 55082847 55083286 -64661612 - LTR7 LTR ERV1 0 450 1 3986 158 23 18 chr13 55083286 55083927 -64660971 + MER50 LTR ERV1 65 711 -23 26 50 0 0 chr13 55084006 55084046 -64660852 + AT_rich Low_complexity Low_complexity 1 40 0 3411 153 58 16 chr13 55084046 55084715 -64660183 - LTR34 LTR ERV1 -2 697 1 23 0 0 0 chr13 55084912 55084935 -64659963 + AT_rich Low_complexity Low_complexity 1 23 0 2194 167 98 43 chr13 55085150 55085714 -64659184 - LTR49 LTR ERV1 0 595 1 3851 168 25 17 chr13 55086405 55087120 -64657778 - MER72 LTR ERV1 0 722 2 225 333 58 0 chr13 55087209 55087296 -64657602 + L2 LINE L2 3208 3299 -14 33 25 0 0 chr13 55087319 55087359 -64657539 + AT_rich Low_complexity Low_complexity 1 40 0 2040 149 0 0 chr13 55087401 55087697 -64657201 + AluSq SINE Alu 1 296 -17 269 309 0 37 chr13 55087699 55087780 -64657118 + MIR SINE MIR 21 98 -164 281 254 34 51 chr13 55087993 55088111 -64656787 - MLT1I LTR MaLR -208 201 86 21 0 0 0 chr13 55088763 55088784 -64656114 + AT_rich Low_complexity Low_complexity 1 21 0 214 182 0 0 chr13 55089637 55089681 -64655217 + A-rich Low_complexity Low_complexity 3 46 0 4435 170 58 16 chr13 55089837 55090723 -64654175 - MER49 LTR ERV1 0 923 1 3078 133 10 2 chr13 55091132 55091642 -64653256 + L1MA4 LINE L1 5783 6296 -4 234 352 152 26 chr13 55091918 55092182 -64652716 + L2 LINE L2 846 1142 -2172 260 363 76 51 chr13 55092270 55092390 -64652508 + L2 LINE L2 1479 1594 -1720 2285 118 0 3 chr13 55092390 55092704 -64652194 - AluSp SINE Alu 0 313 1 260 363 76 51 chr13 55092704 55093018 -64651880 + L2 LINE L2 1594 1924 -1390 371 286 10 69 chr13 55093056 55093259 -64651639 + L2 LINE L2 3099 3289 -24 824 341 73 64 chr13 55093347 55094414 -64650484 + L2 LINE L2 1997 3078 -194 1979 139 33 0 chr13 55094481 55094783 -64650115 - AluSx SINE Alu 0 312 1 187 296 28 120 chr13 55094849 55094957 -64649941 + L2 LINE L2 3170 3267 -5 181 311 0 33 chr13 55095916 55095977 -64648921 - L3 LINE CR1 -70 1507 1449 26 64 0 0 chr13 55095987 55096034 -64648864 + AT_rich Low_complexity Low_complexity 1 47 0 443 289 105 87 chr13 55096903 55097283 -64647615 + HAL1 LINE L1 757 1143 -1364 32 26 0 0 chr13 55097289 55097328 -64647570 + AT_rich Low_complexity Low_complexity 1 39 0 2059 84 9 56 chr13 55097690 55098013 -64646885 + AluY SINE Alu 4 311 0 915 245 98 27 chr13 55098705 55099018 -64645880 - MLT1C LTR MaLR -26 441 128 2266 97 7 3 chr13 55099018 55099328 -64645570 + AluSx SINE Alu 2 312 0 915 245 98 27 chr13 55099328 55099434 -64645464 - MLT1C LTR MaLR -339 128 31 27 0 0 0 chr13 55099491 55099518 -64645380 + AT_rich Low_complexity Low_complexity 1 27 0 242 225 11 56 chr13 55099683 55099772 -64645126 + Charlie8 DNA MER1_type 712 796 -1621 1879 148 3 3 chr13 55100365 55100672 -64644226 - AluSq SINE Alu 0 307 1 208 83 42 21 chr13 55100872 55100920 -64643978 + A-rich Low_complexity Low_complexity 5 53 0 466 284 158 5 chr13 55101371 55101561 -64643337 - MER20 DNA MER1_type 0 219 1 25 0 0 0 chr13 55101577 55101602 -64643296 + AT_rich Low_complexity Low_complexity 1 25 0 202 320 40 0 chr13 55102152 55102202 -64642696 - L3b LINE CR1 -12 1571 1520 22 35 0 0 chr13 55102870 55102899 -64641999 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 55103023 55103044 -64641854 + AT_rich Low_complexity Low_complexity 1 21 0 346 311 205 15 chr13 55103049 55103380 -64641518 - L1M4 LINE L1 -1975 4171 3778 987 198 75 0 chr13 55103386 55103598 -64641300 - L1PA16 LINE L1 -2 6164 5937 1079 265 164 78 chr13 55103600 55104603 -64640295 - MER52A LTR ERV1 0 1755 666 2102 139 24 3 chr13 55104611 55104950 -64639948 - L1PA16 LINE L1 -229 5937 5592 512 289 233 26 chr13 55104951 55105525 -64639373 - L1M4 LINE L1 -2387 3759 3067 25 31 0 0 chr13 55105541 55105573 -64639325 + AT_rich Low_complexity Low_complexity 1 32 0 2348 59 0 10 chr13 55105628 55105934 -64638964 - AluY SINE Alu -8 303 1 31 26 0 0 chr13 55106761 55106799 -64638099 + AT_rich Low_complexity Low_complexity 1 38 0 317 291 10 118 chr13 55107244 55107447 -64637451 + MIR SINE MIR 11 191 -71 267 333 55 20 chr13 55107582 55107752 -64637146 + MIR SINE MIR 14 252 -10 2412 71 0 0 chr13 55107767 55108077 -64636821 + AluY SINE Alu 1 310 -1 25 83 0 0 chr13 55108078 55108138 -64636760 + AT_rich Low_complexity Low_complexity 1 60 0 247 203 34 0 chr13 55108293 55108352 -64636546 - MLT1A1 LTR MaLR -5 360 300 314 132 59 44 chr13 55108824 55108892 -64636006 + MER67D LTR ERV1 445 513 -1 1674 217 14 28 chr13 55108921 55109285 -64635613 - MLT1A1 LTR MaLR -2 363 5 31 68 0 0 chr13 55110646 55110705 -64634193 + AT_rich Low_complexity Low_complexity 1 59 0 249 282 60 23 chr13 55112122 55112214 -64632684 - MIR SINE MIR -63 145 59 23 54 0 0 chr13 55112671 55112708 -64632190 + AT_rich Low_complexity Low_complexity 1 37 0 3848 175 64 25 chr13 55113807 55114634 -64630264 + MER6 DNA MER2_type 4 862 -3 25 0 0 0 chr13 55114686 55114711 -64630187 + AT_rich Low_complexity Low_complexity 1 25 0 250 304 154 61 chr13 55116544 55116758 -64628140 - MIR SINE MIR -1 261 28 508 172 8 8 chr13 55117059 55117181 -64627717 + (TA)n Simple_repeat Simple_repeat 1 122 0 672 290 60 54 chr13 55118349 55118888 -64626010 - MLT1G3 LTR MaLR 0 585 14 24 32 0 0 chr13 55119530 55119561 -64625337 + AT_rich Low_complexity Low_complexity 1 31 0 357 305 0 8 chr13 55119917 55120048 -64624850 - MLT1-int LTR MaLR -814 557 428 14190 151 15 15 chr13 55120452 55121719 -64623179 + Tigger1 DNA MER2_type 1 1267 -1151 2047 136 0 0 chr13 55121719 55122029 -64622869 - L1PA16 LINE L1 -9 6157 5848 14190 151 15 15 chr13 55122029 55122139 -64622759 + Tigger1 DNA MER2_type 1267 1376 -1042 4095 166 72 49 chr13 55122139 55123186 -64621712 - MER11C LTR ERVK 0 1071 1 14190 151 15 15 chr13 55123186 55124226 -64620672 + Tigger1 DNA MER2_type 1376 2418 0 228 242 33 77 chr13 55124322 55124413 -64620485 - MLT1A1 LTR MaLR -315 215 129 * 562 285 8 73 chr13 55124381 55124627 -64620271 - MLT1G1 LTR MaLR -361 234 5 245 232 0 14 chr13 55127473 55127542 -64617356 + MLT1D LTR MaLR 180 247 -258 655 247 1 13 chr13 55127558 55127724 -64617174 + MLT1D LTR MaLR 357 505 0 5686 169 9 18 chr13 55127830 55128502 -64616396 - L1PA15 LINE L1 -31 6134 5458 1877 149 3 10 chr13 55128502 55128811 -64616087 - AluSg SINE Alu -3 307 1 5686 169 9 18 chr13 55128811 55129088 -64615810 - L1PA15 LINE L1 -707 5458 5180 1244 139 65 0 chr13 55129088 55129303 -64615595 - MER30 DNA MER1_type 0 230 2 5686 169 9 18 chr13 55129303 55130283 -64614615 - L1PA15 LINE L1 -985 5180 4228 22 0 0 0 chr13 55130449 55130471 -64614427 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr13 55131662 55131684 -64613214 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2219 69 7 0 chr13 55131686 55131962 -64612936 - AluY SINE Alu -33 278 1 21 36 0 0 chr13 55132799 55132827 -64612071 + AT_rich Low_complexity Low_complexity 1 28 0 2047 129 0 0 chr13 55134050 55134367 -64610531 + AluSp SINE Alu 1 317 0 23 0 0 0 chr13 55134591 55134614 -64610284 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 55135111 55135132 -64609766 + AT_rich Low_complexity Low_complexity 1 21 0 186 205 51 64 chr13 55135287 55135365 -64609533 - MIR SINE MIR 0 262 186 222 275 0 0 chr13 55137884 55137964 -64606934 + (TA)n Simple_repeat Simple_repeat 1 80 0 200 338 0 0 chr13 55138022 55138090 -64606808 + (CATATA)n Simple_repeat Simple_repeat 1 68 0 22 56 0 0 chr13 55139034 55139070 -64605828 + AT_rich Low_complexity Low_complexity 1 36 0 813 245 48 36 chr13 55139442 55139691 -64605207 + LTR12 LTR ERV1 238 489 -225 29 0 0 0 chr13 55139749 55139778 -64605120 + AT_rich Low_complexity Low_complexity 1 29 0 330 314 65 8 chr13 55140398 55140522 -64604376 + L2 LINE L2 3183 3313 0 3582 99 57 37 chr13 55140676 55141274 -64603624 - MER4B LTR ERV1 0 610 1 512 165 28 9 chr13 55141331 55141440 -64603458 + MLT2D LTR ERVL 5 115 -349 410 271 0 9 chr13 55141450 55141563 -64603335 - L1PB4 LINE L1 -4 6150 6045 3445 55 0 9 chr13 55141576 55142028 -64602870 - LTR7 LTR ERV1 -2 448 1 2503 82 45 13 chr13 55142028 55142408 -64602490 - HERVH LTR ERV1 0 7713 7322 1320 124 20 0 chr13 55142406 55142607 -64602291 - HERVH LTR ERV1 -1894 5819 5615 * 4288 142 1 1 chr13 55142638 55143300 -64601598 - HERVH LTR ERV1 -2564 5149 4488 3322 113 2 6 chr13 55143302 55143806 -64601092 - HERVH LTR ERV1 -3720 3993 3492 831 115 6 39 chr13 55143796 55143952 -64600946 - HERVH LTR ERV1 -4423 3290 3140 * 15237 86 6 28 chr13 55143931 55146998 -64597900 - HERVH LTR ERV1 -4718 2995 1 3324 72 11 7 chr13 55147000 55147446 -64597452 - LTR7 LTR ERV1 -2 448 1 1161 240 3 16 chr13 55147491 55147759 -64597139 + MLT2D LTR ERVL 111 469 -46 22 56 0 0 chr13 55147918 55147954 -64596944 + AT_rich Low_complexity Low_complexity 1 36 0 897 233 33 14 chr13 55148091 55148306 -64596592 + LTR1B LTR ERV1 1 219 -607 1979 152 28 60 chr13 55148311 55148797 -64596101 - MER4D LTR ERV1 -260 631 50 1237 189 114 4 chr13 55148784 55149038 -64595860 - MER49 LTR ERV1 -641 282 1 * 1394 231 42 68 chr13 55149065 55149564 -64595334 + MLT1D LTR MaLR 20 505 0 368 356 16 37 chr13 55150111 55150302 -64594596 - L2 LINE L2 0 3313 3127 3022 153 50 19 chr13 55150719 55151244 -64593654 + LTR38B LTR ERV1 9 555 -55 2101 107 24 3 chr13 55151244 55151542 -64593356 - AluSq SINE Alu -9 304 1 3022 153 50 19 chr13 55151542 55151592 -64593306 + LTR38B LTR ERV1 555 602 -8 1115 218 52 55 chr13 55152384 55152710 -64592188 - MLT1B LTR MaLR 0 390 66 180 0 0 0 chr13 55152859 55152879 -64592019 + (TA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr13 55152995 55153019 -64591879 + AT_rich Low_complexity Low_complexity 1 24 0 226 258 156 0 chr13 55153657 55153744 -64591154 + MIR SINE MIR 35 135 -73 28 48 0 0 chr13 55153883 55153925 -64590973 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr13 55154328 55154356 -64590542 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr13 55155419 55155459 -64589439 + AT_rich Low_complexity Low_complexity 1 40 0 377 42 0 0 chr13 55155610 55155658 -64589240 + AluY SINE Alu 1 48 -252 1087 280 25 12 chr13 55155945 55156266 -64588632 - L1MDb LINE L1 -6077 332 8 24 0 0 0 chr13 55156327 55156351 -64588547 + AT_rich Low_complexity Low_complexity 1 24 0 926 285 29 31 chr13 55156980 55157432 -64587466 + Charlie4a DNA MER1_type 40 490 -18 2109 126 3 7 chr13 55157485 55157786 -64587112 + AluSx SINE Alu 1 300 -12 798 307 54 37 chr13 55157790 55158275 -64586623 + HAL1 LINE L1 69 561 -1946 631 307 137 24 chr13 55158911 55159335 -64585563 + HAL1 LINE L1 615 1086 -1421 223 353 113 54 chr13 55159459 55159779 -64585119 - L3 LINE CR1 -185 1392 1033 550 255 107 20 chr13 55159779 55159975 -64584923 - MER58C DNA MER1_type -2 213 1 223 353 113 54 chr13 55159975 55160133 -64584765 - L3 LINE CR1 -544 1033 886 395 313 69 6 chr13 55160228 55160244 -64584654 - MER58B DNA MER1_type -2079 341 327 222 91 0 0 chr13 55160244 55160277 -64584621 + (TTA)n Simple_repeat Simple_repeat 1 33 0 395 313 69 6 chr13 55160277 55160420 -64584478 - MER58B DNA MER1_type -2093 327 172 23 0 0 0 chr13 55160963 55160986 -64583912 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 55161382 55161403 -64583495 + AT_rich Low_complexity Low_complexity 1 21 0 371 215 19 37 chr13 55161469 55161576 -64583322 - MER3 DNA MER1_type -14 195 91 21 36 0 0 chr13 55161600 55161628 -64583270 + AT_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr13 55161889 55161926 -64582972 + AT_rich Low_complexity Low_complexity 1 37 0 274 292 193 19 chr13 55162035 55162196 -64582702 + MER5A DNA MER1_type 1 189 0 902 239 67 122 chr13 55162681 55162961 -64581937 - MER67D LTR ERV1 -8 506 267 2027 133 89 9 chr13 55162961 55163298 -64581600 + THE1B LTR MaLR 1 364 0 902 239 67 122 chr13 55163298 55163552 -64581346 - MER67D LTR ERV1 -247 267 1 240 394 49 0 chr13 55163725 55163867 -64581031 - MIR3 SINE MIR -14 194 46 212 250 0 0 chr13 55165269 55165317 -64579581 + (CATA)n Simple_repeat Simple_repeat 3 50 0 22 35 0 0 chr13 55166295 55166324 -64578574 + AT_rich Low_complexity Low_complexity 1 29 0 1290 147 79 7 chr13 55167139 55167418 -64577480 - L1MA8 LINE L1 -1 6290 5992 1820 272 68 79 chr13 55167668 55169731 -64575167 + L1M2 LINE L1 1 1756 -5453 3557 58 0 2 chr13 55169738 55170187 -64574711 - LTR7 LTR ERV1 -2 448 1 2547 76 45 13 chr13 55170187 55170567 -64574331 - HERVH LTR ERV1 0 7713 7322 1327 121 20 0 chr13 55170567 55170766 -64574132 - HERVH LTR ERV1 -1896 5817 5615 4395 138 1 1 chr13 55170796 55171458 -64573440 - HERVH LTR ERV1 -2564 5149 4488 3407 112 4 2 chr13 55171460 55171961 -64572937 - HERVH LTR ERV1 -3720 3993 3492 1005 107 7 0 chr13 55171951 55172101 -64572797 - HERVH LTR ERV1 -4423 3290 3140 * 19832 99 7 34 chr13 55172080 55175157 -64569741 - HERVH LTR ERV1 -4718 2995 1 3694 40 0 2 chr13 55175159 55175608 -64569290 - LTR7 LTR ERV1 -2 448 1 1120 186 86 0 chr13 55175611 55175832 -64569066 + L1M2 LINE L1 1773 2012 -5197 1318 199 32 34 chr13 55175838 55176196 -64568702 - MER67C LTR ERV1 -249 265 1 21 0 0 0 chr13 55176726 55176747 -64568151 + AT_rich Low_complexity Low_complexity 1 21 0 327 146 0 0 chr13 55176770 55176825 -64568073 + (GGGA)n Simple_repeat Simple_repeat 2 56 0 2118 121 21 0 chr13 55176876 55177166 -64567732 + AluSg SINE Alu 1 296 -14 1170 186 12 12 chr13 55177430 55177688 -64567210 - L1MA4A LINE L1 -362 5941 5684 1986 75 14 4 chr13 55177691 55177970 -64566928 + MER41B LTR ERV1 1 282 -353 25 83 0 0 chr13 55178084 55178144 -64566754 + AT_rich Low_complexity Low_complexity 1 60 0 309 330 80 24 chr13 55179197 55179409 -64565489 - L2 LINE L2 -9 3304 3081 24 77 0 0 chr13 55179997 55180049 -64564849 + AT_rich Low_complexity Low_complexity 1 52 0 210 222 16 32 chr13 55180847 55180910 -64563988 + CT-rich Low_complexity Low_complexity 4 65 0 34 79 0 0 chr13 55181802 55181878 -64563020 + AT_rich Low_complexity Low_complexity 1 76 0 22 0 0 0 chr13 55182726 55182748 -64562150 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 55183076 55183100 -64561798 + AT_rich Low_complexity Low_complexity 1 24 0 463 148 9 37 chr13 55183914 55184022 -64560876 + L1 LINE L1 5116 5220 -926 1875 153 7 0 chr13 55184172 55184459 -64560439 + AluSx SINE Alu 24 312 0 243 338 99 10 chr13 55184488 55184893 -64560005 + L1M4 LINE L1 4400 4840 -1306 28 48 0 0 chr13 55185118 55185160 -64559738 + AT_rich Low_complexity Low_complexity 1 42 0 2847 94 6 15 chr13 55185522 55185925 -64558973 + MLT2A1 LTR ERVL 1 517 -37 38343 101 13 5 chr13 55185925 55191240 -64553658 + HERVL-A1 LTR ERVL 207 5564 -90 1130 185 5 40 chr13 55192072 55192294 -64552604 + AluJo SINE Alu 1 214 -98 31 0 0 0 chr13 55192861 55192892 -64552006 + AT_rich Low_complexity Low_complexity 1 31 0 219 36 0 0 chr13 55193968 55193996 -64550902 + (GA)n Simple_repeat Simple_repeat 2 29 0 1518 190 39 3 chr13 55194999 55195283 -64549615 - AluSx SINE Alu -18 294 1 27 68 0 34 chr13 55196016 55196077 -64548821 + AT_rich Low_complexity Low_complexity 1 60 -25 2449 71 0 0 chr13 55196077 55196387 -64548511 - AluY SINE Alu -1 310 1 27 68 0 34 chr13 55196387 55196413 -64548485 + AT_rich Low_complexity Low_complexity 60 85 0 * 273 313 31 20 chr13 55196402 55196572 -64548326 - MIR SINE MIR -10 252 14 317 291 10 118 chr13 55196707 55196910 -64547988 - MIR SINE MIR -71 191 11 31 26 0 0 chr13 55197356 55197394 -64547504 + AT_rich Low_complexity Low_complexity 1 38 0 1548 204 22 18 chr13 55198302 55198747 -64546151 - LTR7 LTR ERV1 -2 448 2 1047 252 3 17 chr13 55198799 55199062 -64545836 + MLT2D LTR ERVL 116 469 -46 22 56 0 0 chr13 55199221 55199257 -64545641 + AT_rich Low_complexity Low_complexity 1 36 0 861 237 33 14 chr13 55199393 55199608 -64545290 + LTR1B LTR ERV1 1 219 -607 1940 141 22 150 chr13 55199613 55200340 -64544558 - MER4D LTR ERV1 -260 631 1 1313 237 44 66 chr13 55200367 55200864 -64544034 + MLT1D LTR MaLR 20 505 0 250 363 12 50 chr13 55201412 55201572 -64543326 - L2 LINE L2 0 3313 3160 2182 246 31 12 chr13 55201840 55202412 -64542486 + Charlie8 DNA MER1_type 1522 2104 -313 22 70 0 0 chr13 55202658 55202701 -64542197 + AT_rich Low_complexity Low_complexity 1 43 0 1242 220 18 32 chr13 55202716 55202853 -64542045 - AluJb SINE Alu 0 321 184 1916 153 82 15 chr13 55202853 55203194 -64541704 + THE1B LTR MaLR 1 364 0 1242 220 18 32 chr13 55203194 55203376 -64541522 - AluJb SINE Alu -137 184 6 238 293 0 0 chr13 55203383 55203458 -64541440 + Charlie8 DNA MER1_type 2341 2415 -2 14478 187 28 35 chr13 55204104 55204447 -64540451 + L1M1 LINE L1 1 345 -7220 425 102 0 0 chr13 55204447 55204506 -64540392 + AluJ/FLAM SINE Alu 1 59 -253 14478 187 28 35 chr13 55204506 55206959 -64537939 + L1M1 LINE L1 345 2837 -4728 216 0 0 0 chr13 55206959 55206983 -64537915 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 14478 187 28 35 chr13 55206983 55207028 -64537870 + L1M1 LINE L1 2837 2881 -4684 463 144 56 0 chr13 55207057 55207147 -64537751 + L1MA1 LINE L1 6206 6300 -2 1761 301 57 21 chr13 55207743 55208576 -64536322 - L1MC4 LINE L1 -137 7905 6867 2030 126 0 17 chr13 55208576 55208878 -64536020 - AluSx SINE Alu -15 297 1 1761 301 57 21 chr13 55208878 55209211 -64535687 - L1MC4 LINE L1 -1175 6867 6548 514 307 74 20 chr13 55209733 55209977 -64534921 + MIR SINE MIR 6 262 0 22 0 0 0 chr13 55210157 55210179 -64534719 + AT_rich Low_complexity Low_complexity 1 22 0 264 316 86 0 chr13 55211645 55211762 -64533136 - L2 LINE L2 -6 3307 3181 224 310 35 11 chr13 55211747 55211834 -64533064 + MIR SINE MIR 76 164 -98 * 891 53 0 0 chr13 55212433 55212546 -64532352 + (TTC)n Simple_repeat Simple_repeat 2 114 0 467 239 17 62 chr13 55212760 55212936 -64531962 - MLT1B LTR MaLR -217 173 6 239 298 131 0 chr13 55213111 55213195 -64531703 + MER5B DNA MER1_type 4 98 -80 502 297 45 49 chr13 55213594 55213860 -64531038 + MLT1J LTR MaLR 2 266 -245 22 35 0 0 chr13 55214181 55214210 -64530688 + AT_rich Low_complexity Low_complexity 1 29 0 1933 170 8 35 chr13 55215390 55215761 -64529137 - THE1C LTR MaLR 0 375 15 455 283 0 23 chr13 55216025 55216202 -64528696 + MER58A DNA MER1_type 27 199 -25 988 195 6 0 chr13 55216345 55216514 -64528384 - AluSx SINE Alu -140 172 3 200 325 35 26 chr13 55216904 55217018 -64527880 - MIR SINE MIR -32 230 116 320 330 200 5 chr13 55217183 55217383 -64527515 + MIR SINE MIR 12 250 -12 23 33 0 0 chr13 55217702 55217732 -64527166 + AT_rich Low_complexity Low_complexity 1 30 0 245 212 0 15 chr13 55218689 55218755 -64526143 + (TA)n Simple_repeat Simple_repeat 2 66 0 390 267 0 0 chr13 55218755 55218845 -64526053 - L1MC4 LINE L1 -1339 6703 6614 4582 163 16 32 chr13 55221188 55221856 -64523042 + L1PB4 LINE L1 5198 5875 -281 243 0 0 0 chr13 55221856 55221883 -64523015 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1830 139 0 18 chr13 55221889 55222170 -64522728 - AluSx SINE Alu -36 276 1 4582 163 16 32 chr13 55222170 55222464 -64522434 + L1PB4 LINE L1 5880 6153 -3 198 0 0 0 chr13 55222792 55222814 -64522084 + (A)n Simple_repeat Simple_repeat 1 22 0 643 285 29 84 chr13 55222953 55223450 -64521448 + L1ME LINE L1 278 749 -5321 1364 286 34 79 chr13 55223506 55224437 -64520461 + L1M4 LINE L1 3837 4733 -1413 775 275 62 47 chr13 55225669 55226117 -64518781 - L1MA7 LINE L1 -64 6227 5773 655 181 107 17 chr13 55226217 55226394 -64518504 - L1MA6 LINE L1 -6 6294 6102 * 907 237 28 31 chr13 55226367 55226654 -64518244 - L1M4 LINE L1 -391 6588 6303 305 248 20 74 chr13 55226657 55226806 -64518092 - L1M4 LINE L1 -3261 3680 3540 32 0 0 0 chr13 55227375 55227407 -64517491 + AT_rich Low_complexity Low_complexity 1 32 0 40 79 0 0 chr13 55228205 55228294 -64516604 + AT_rich Low_complexity Low_complexity 1 89 0 41 72 0 0 chr13 55228432 55228515 -64516383 + AT_rich Low_complexity Low_complexity 1 83 0 836 298 19 28 chr13 55228566 55228888 -64516010 - L1M4 LINE L1 -6006 417 99 18202 91 6 3 chr13 55228923 55232312 -64512586 - L1PA7 LINE L1 -5 6149 2750 789 206 25 5 chr13 55233002 55233206 -64511692 - L1MA4 LINE L1 0 6300 6093 195 175 50 0 chr13 55233231 55233271 -64511627 + L2 LINE L2 3272 3313 0 2113 195 21 88 chr13 55233438 55234017 -64510881 - MLT2B3 LTR ERVL 0 554 15 1894 79 9 0 chr13 55234100 55234527 -64510371 + L1PA8 LINE L1 5670 6170 -2 1745 188 56 51 chr13 55234756 55235188 -64509710 + MER67D LTR ERV1 1 434 -80 317 272 117 19 chr13 55235254 55235416 -64509482 + MIR SINE MIR 41 218 -44 25 0 0 0 chr13 55236223 55236248 -64508650 + AT_rich Low_complexity Low_complexity 1 25 0 637 119 20 0 chr13 55237476 55237577 -64507321 + AluSg/x SINE Alu 197 299 -13 636 320 51 27 chr13 55237749 55238005 -64506893 + MIR SINE MIR 1 262 0 2908 236 83 48 chr13 55238433 55239592 -64505306 - L1MCa LINE L1 -4865 1180 9 1691 128 92 14 chr13 55240971 55241253 -64503645 + AluSx SINE Alu 1 304 -8 277 317 67 8 chr13 55243157 55243277 -64501621 + L2 LINE L2 3187 3313 0 21 82 0 0 chr13 55243702 55243751 -64501147 + AT_rich Low_complexity Low_complexity 1 49 0 237 193 11 23 chr13 55243808 55243896 -64501002 + GA-rich Low_complexity Low_complexity 1 87 0 3649 229 57 52 chr13 55244936 55246109 -64498789 - L1MC3 LINE L1 -40 7745 6567 702 244 33 58 chr13 55246131 55246423 -64498475 - L1MCa LINE L1 -4400 2026 1799 553 231 64 112 chr13 55246423 55246844 -64498054 + L1ME1 LINE L1 3850 4240 -1906 2044 233 26 4 chr13 55247201 55247741 -64497157 + L1M2 LINE L1 2269 2820 -4029 8958 204 30 26 chr13 55247751 55250189 -64494709 + L1P5 LINE L1 3047 5484 -667 21 36 0 0 chr13 55250193 55250221 -64494677 + AT_rich Low_complexity Low_complexity 1 28 0 234 186 0 0 chr13 55250276 55250319 -64494579 - L1 LINE L1 -1932 4214 4172 1346 244 89 36 chr13 55250353 55250882 -64494016 + L1ME1 LINE L1 5351 5907 -259 351 206 43 22 chr13 55250985 55251077 -64493821 + L1MB7 LINE L1 6080 6173 -11 386 275 285 0 chr13 55251224 55251417 -64493481 + MIR SINE MIR 15 262 0 1759 223 69 13 chr13 55251458 55252010 -64492888 - L1MD3 LINE L1 -237 7758 6975 761 260 11 6 chr13 55252010 55252191 -64492707 + MLT1D LTR MaLR 1 182 -323 1145 240 31 3 chr13 55252243 55252530 -64492368 - L1ME1 LINE L1 -206 5960 5666 1410 243 68 138 chr13 55252871 55253456 -64491442 + MLT1E LTR MaLR 45 591 -2 253 268 278 0 chr13 55253466 55253563 -64491335 - MER91C DNA MER1_type -11 129 6 321 338 40 27 chr13 55253728 55253876 -64491022 - MIR3 SINE MIR -31 177 60 627 239 14 0 chr13 55254176 55254318 -64490580 + LTR40a LTR ERVL 3 146 -373 16179 32 5 0 chr13 55254496 55257217 -64487681 + L1PA4 LINE L1 3408 6147 -8 2264 64 7 24 chr13 55257357 55257655 -64487243 + AluY SINE Alu 1 293 -18 201 74 0 0 chr13 55257719 55257746 -64487152 + (TA)n Simple_repeat Simple_repeat 1 27 0 1327 123 199 36 chr13 55259865 55260166 -64484732 - MSTA LTR MaLR 0 428 79 189 74 0 0 chr13 55260376 55260403 -64484495 + (TG)n Simple_repeat Simple_repeat 2 28 0 1393 244 121 26 chr13 55261984 55262447 -64482451 - LTR40a LTR ERVL -12 507 1 1373 275 19 123 chr13 55364515 55365414 -64379484 + MSTC-int LTR MaLR 259 1063 -308 1612 59 10 0 chr13 55365414 55365617 -64379281 - AluY SINE Alu -4 307 103 827 160 0 26 chr13 55365717 55365873 -64379025 + AluSg/x SINE Alu 159 310 0 201 121 0 0 chr13 55365873 55365906 -64378992 + (TA)n Simple_repeat Simple_repeat 2 34 0 264 132 57 19 chr13 55366112 55366218 -64378680 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 25 90 0 0 chr13 55366371 55366438 -64378460 + AT_rich Low_complexity Low_complexity 1 67 0 29 60 0 0 chr13 55366927 55366977 -64377921 + AT_rich Low_complexity Low_complexity 1 50 0 640 276 97 17 chr13 55368075 55368426 -64376472 + L1M4 LINE L1 4899 5277 -869 349 98 0 0 chr13 55368427 55368478 -64376420 - AluSc SINE Alu -4 295 245 379 148 16 0 chr13 55368578 55368639 -64376259 - AluS SINE Alu -239 62 1 21 0 0 0 chr13 55368645 55368666 -64376232 + AT_rich Low_complexity Low_complexity 1 21 0 444 312 40 15 chr13 55369071 55369270 -64375628 + LTR68 LTR ERV1 237 440 -300 508 325 72 29 chr13 55369619 55370136 -64374762 - MLT1H1 LTR MaLR 0 555 1 207 114 0 0 chr13 55370704 55370739 -64374159 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 25 51 0 0 chr13 55371185 55371224 -64373674 + AT_rich Low_complexity Low_complexity 1 39 0 554 260 83 27 chr13 55371953 55372291 -64372607 - L1MC5 LINE L1 -99 7862 7506 3684 208 35 9 chr13 55372369 55373209 -64371689 - L1MB7 LINE L1 -19 6165 5305 330 303 17 50 chr13 55373209 55373328 -64371570 - MIR SINE MIR -115 147 33 8891 152 65 12 chr13 55373491 55374178 -64370720 - Tigger1 DNA MER2_type -187 2231 1582 2076 180 7 53 chr13 55374178 55374627 -64370271 + MSTC LTR MaLR 1 428 0 8891 152 65 12 chr13 55374627 55375548 -64369350 - Tigger1 DNA MER2_type -836 1582 538 1226 200 105 24 chr13 55375550 55375845 -64369053 - Tigger1 DNA MER2_type -2099 319 1 219 36 0 0 chr13 55376240 55376268 -64368630 + (A)n Simple_repeat Simple_repeat 1 28 0 1178 298 129 11 chr13 55376660 55376804 -64368094 - L1MEc LINE L1 -2291 3924 3798 1408 229 26 7 chr13 55376804 55377110 -64367788 - AluJo SINE Alu 0 312 1 1178 298 129 11 chr13 55377110 55377851 -64367047 - L1MEc LINE L1 -2417 3798 2935 934 291 63 15 chr13 55377849 55378448 -64366450 - L1MEc LINE L1 -3616 2599 2019 * 331 311 44 0 chr13 55378861 55378951 -64365947 - AluJ/FLAM SINE Alu -207 95 2 238 267 0 0 chr13 55378960 55379020 -64365878 - L1 LINE L1 -2471 3675 3616 217 156 0 22 chr13 55379147 55379192 -64365706 + T-rich Low_complexity Low_complexity 5 48 0 21 0 0 0 chr13 55379711 55379732 -64365166 + AT_rich Low_complexity Low_complexity 1 21 0 2115 105 0 7 chr13 55379732 55380058 -64364840 + AluSp SINE Alu 1 324 0 639 205 18 0 chr13 55380058 55380196 -64364702 - L1PB4 LINE L1 -8 6158 6016 183 234 43 21 chr13 55380429 55380476 -64364422 + MER5A DNA MER1_type 122 169 -20 405 0 0 0 chr13 55380908 55380953 -64363945 + (TG)n Simple_repeat Simple_repeat 1 45 0 603 333 12 4 chr13 55381423 55381672 -64363226 - L1ME LINE L1 -342 5779 5529 211 327 71 9 chr13 55382227 55382340 -64362558 + L2 LINE L2 3153 3272 0 839 101 0 0 chr13 55383062 55383181 -64361717 - AluJb SINE Alu -189 123 5 731 116 93 16 chr13 55384470 55384599 -64360299 + LTR1 LTR ERV1 1 139 -646 51 83 0 0 chr13 55384605 55384726 -64360172 + AT_rich Low_complexity Low_complexity 1 121 0 1853 262 60 49 chr13 55384908 55385273 -64359625 - L1ME1 LINE L1 -5 6161 5802 264 30 0 0 chr13 55385273 55385306 -64359592 + (TC)n Simple_repeat Simple_repeat 2 34 0 1853 262 60 49 chr13 55385306 55386671 -64358227 - L1ME1 LINE L1 -364 5802 4419 340 311 82 7 chr13 55386812 55386947 -64357951 - MIR SINE MIR 0 262 118 263 281 22 0 chr13 55387087 55387176 -64357722 - L1MC4 LINE L1 -1337 6705 6615 317 247 49 37 chr13 55387207 55387369 -64357529 + L1ME2 LINE L1 5101 5264 -882 1522 281 86 28 chr13 55387380 55387727 -64357171 + L1ME2 LINE L1 5354 5679 -485 1877 154 76 15 chr13 55387727 55388070 -64356828 - THE1B LTR MaLR 0 364 1 1522 281 86 28 chr13 55388070 55388479 -64356419 + L1ME2 LINE L1 5679 6154 -10 229 226 60 24 chr13 55389181 55389265 -64355633 + HAL1b LINE L1 973 1059 -289 26 30 0 0 chr13 55389509 55389542 -64355356 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr13 55389619 55389653 -64355245 + AT_rich Low_complexity Low_complexity 1 34 0 249 266 0 0 chr13 55389947 55390011 -64354887 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 788 196 21 0 chr13 55390786 55390929 -64353969 + MER61D LTR ERV1 338 483 -18 243 88 0 0 chr13 55391616 55391650 -64353248 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 276 379 91 16 chr13 55391749 55392002 -64352896 + L2 LINE L2 2996 3267 -5 5538 189 15 33 chr13 55392502 55393297 -64351601 - L1PB3 LINE L1 0 6154 5346 2235 104 0 28 chr13 55393297 55393614 -64351284 + AluSp SINE Alu 1 308 -5 5538 189 15 33 chr13 55393614 55394998 -64349900 - L1PB3 LINE L1 -808 5346 3990 330 98 0 0 chr13 55398125 55398176 -64346722 + (TG)n Simple_repeat Simple_repeat 1 51 0 315 286 143 25 chr13 55398885 55399004 -64345894 - MIR SINE MIR -119 143 11 182 276 179 58 chr13 55399146 55399302 -64345596 - L2 LINE L2 -1265 2049 1875 329 263 0 18 chr13 55400352 55400466 -64344432 + MER67C LTR ERV1 73 184 -526 1749 170 69 20 chr13 55400466 55400813 -64344085 + THE1B LTR MaLR 1 364 0 10893 114 10 2 chr13 55400814 55402380 -64342518 + THE1B-int LTR MaLR 2 1579 -1 1882 165 44 15 chr13 55402388 55402727 -64342171 + THE1B LTR MaLR 16 364 0 2500 197 49 8 chr13 55402730 55403237 -64341661 + MER67C LTR ERV1 183 710 0 411 348 80 5 chr13 55403429 55403616 -64341282 + LTR33A LTR ERVL 59 259 -264 36 40 0 0 chr13 55404013 55404063 -64340835 + AT_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr13 55404729 55404764 -64340134 + AT_rich Low_complexity Low_complexity 1 35 0 12471 163 18 108 chr13 55405598 55408857 -64336041 - L1P LINE L1 -3178 2968 3 2412 151 48 5 chr13 55409160 55409576 -64335322 - MER61C LTR ERV1 0 434 1 26 30 0 0 chr13 55409753 55409786 -64335112 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr13 55409918 55409955 -64334943 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr13 55410180 55410216 -64334682 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr13 55410409 55410453 -64334445 + AT_rich Low_complexity Low_complexity 1 44 0 276 292 31 31 chr13 55410460 55410556 -64334342 + Tigger5 DNA MER2_type 1 96 -2227 1182 180 15 0 chr13 55410572 55410778 -64334120 + Tigger5 DNA MER2_type 2114 2322 -1 2010 118 0 4 chr13 55411594 55411874 -64333024 - AluSq SINE Alu -32 281 3 185 284 81 27 chr13 55411874 55411948 -64332950 + L2 LINE L2 566 643 -2671 453 330 28 23 chr13 55412005 55412181 -64332717 + MIR SINE MIR 2 178 -84 353 283 59 27 chr13 55412586 55412773 -64332125 + L1MC/D LINE L1 5550 5742 -2066 1704 133 28 0 chr13 55412970 55413218 -64331680 - AluSq SINE Alu -15 298 44 319 341 94 7 chr13 55414130 55414268 -64330630 + L1MEd LINE L1 16 165 -5954 4188 157 91 42 chr13 55414487 55415340 -64329558 - MER4D LTR ERV1 -8 895 1 298 234 0 13 chr13 55415422 55415499 -64329399 + L1MEd LINE L1 679 754 -5365 624 224 45 0 chr13 55415724 55415880 -64329018 + MLT1-int LTR MaLR 1 163 -1208 692 210 4 6 chr13 55415982 55416229 -64328669 + MLT1A1 LTR MaLR 61 363 -2 219 333 39 10 chr13 55416231 55416333 -64328565 + MIR SINE MIR 152 256 -6 282 207 21 147 chr13 55417979 55418156 -64326742 - MIR3 SINE MIR -24 184 33 1597 234 27 0 chr13 55418227 55418564 -64326334 + MLT1A1 LTR MaLR 13 358 -7 365 143 0 0 chr13 55418758 55418814 -64326084 - MER3 DNA MER1_type 0 209 154 875 204 59 50 chr13 55418815 55419035 -64325863 - Tigger2 DNA MER2_type -1 2717 2496 1534 261 55 16 chr13 55419093 55419426 -64325472 - L1M4 LINE L1 -891 5255 4891 2092 165 5 19 chr13 55419426 55419795 -64325103 - THE1B LTR MaLR 0 364 1 1534 261 55 16 chr13 55419795 55420010 -64324888 - L1M4 LINE L1 -1255 4891 4686 715 246 115 35 chr13 55420018 55420122 -64324776 - L1M4 LINE L1 -3143 3003 2909 1942 170 3 0 chr13 55420122 55420433 -64324465 - AluSx SINE Alu 0 312 1 715 246 115 35 chr13 55420433 55420763 -64324135 - L1M4 LINE L1 -3237 2909 2534 491 265 160 8 chr13 55420850 55421118 -64323780 + MER5C DNA MER1_type 16 324 0 37 104 0 0 chr13 55422097 55422232 -64322666 + AT_rich Low_complexity Low_complexity 1 135 0 203 0 37 0 chr13 55422460 55422487 -64322411 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 1525 248 48 3 chr13 55422729 55423060 -64321838 - MLT1A1 LTR MaLR -6 359 14 210 37 0 0 chr13 55423115 55423142 -64321756 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 442 239 8 39 chr13 55423705 55423835 -64321063 - L1MB5 LINE L1 0 6174 6049 1217 255 25 3 chr13 55423859 55424220 -64320678 - L1M4 LINE L1 -1587 4559 4191 * 1496 201 46 110 chr13 55424218 55424467 -64320431 - L1MB5 LINE L1 -312 5862 5599 1544 201 7 3 chr13 55424467 55424755 -64320143 - AluJb SINE Alu -23 289 1 1496 201 46 110 chr13 55424755 55425192 -64319706 - L1MB5 LINE L1 -575 5599 5221 936 253 12 44 chr13 55425194 55425534 -64319364 - L1MB5 LINE L1 -1007 5139 4811 1031 87 12 25 chr13 55425639 55425800 -64319098 - AluY SINE Alu -152 159 1 908 264 12 72 chr13 55425804 55426137 -64318761 + MLT1A1-int LTR MaLR 1059 1371 0 599 187 12 90 chr13 55426146 55426312 -64318586 + MLT1A1 LTR MaLR 7 159 -467 2544 268 36 6 chr13 55426462 55427103 -64317795 + LTR52-int LTR ERVL 14 673 -2883 427 241 62 31 chr13 55427126 55427288 -64317610 + LTR52-int LTR ERVL 846 1012 -2544 823 185 10 6 chr13 55427420 55427582 -64317316 + MLT1A1 LTR MaLR 158 424 -43 1479 230 34 48 chr13 55427604 55428078 -64316820 - MLT1C LTR MaLR 0 467 1 2748 231 45 15 chr13 55428154 55428804 -64316094 + LTR52-int LTR ERVL 1415 2083 -3602 2889 247 77 50 chr13 55428940 55429971 -64314927 + LTR52-int LTR ERVL 2090 3148 -2537 21 36 0 0 chr13 55429971 55429999 -64314899 + AT_rich Low_complexity Low_complexity 1 28 0 316 184 85 0 chr13 55431195 55431336 -64313562 + (TA)n Simple_repeat Simple_repeat 2 154 0 2251 88 0 7 chr13 55431672 55431977 -64312921 + AluY SINE Alu 1 303 -8 24 0 0 0 chr13 55432651 55432675 -64312223 + AT_rich Low_complexity Low_complexity 1 24 0 183 114 0 0 chr13 55432754 55432789 -64312109 + (GA)n Simple_repeat Simple_repeat 2 36 0 28 61 0 0 chr13 55433151 55433200 -64311698 + AT_rich Low_complexity Low_complexity 1 49 0 29 0 0 0 chr13 55433352 55433381 -64311517 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr13 55434179 55434213 -64310685 + AT_rich Low_complexity Low_complexity 1 34 0 2112 213 51 25 chr13 55434982 55435532 -64309366 - L1MB8 LINE L1 0 6178 5615 2130 266 97 16 chr13 55435535 55436301 -64308597 - L1MB8 LINE L1 -1992 4154 3268 306 0 0 0 chr13 55436301 55436335 -64308563 + (CA)n Simple_repeat Simple_repeat 2 35 0 2130 266 97 16 chr13 55436335 55436687 -64308211 - L1MB8 LINE L1 -2878 3268 2946 498 269 73 48 chr13 55436700 55437176 -64307722 - L1M4 LINE L1 -3735 3222 2761 22 0 0 0 chr13 55437597 55437619 -64307279 + AT_rich Low_complexity Low_complexity 1 22 0 1269 249 101 68 chr13 55437671 55438811 -64306087 - L1M4 LINE L1 -4571 2388 1223 275 305 19 38 chr13 55438997 55439102 -64305796 - L1M4 LINE L1 -5835 1020 918 637 348 54 19 chr13 55439448 55439764 -64305134 - L1M4 LINE L1 -6012 847 521 23 33 0 0 chr13 55440001 55440031 -64304867 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 55440095 55440123 -64304775 + AT_rich Low_complexity Low_complexity 1 28 0 341 215 0 0 chr13 55440159 55440224 -64304674 + MER69 DNA AcHobo 5 69 -2457 1370 197 56 3 chr13 55440505 55440789 -64304109 + AluJo SINE Alu 1 299 -13 180 0 0 0 chr13 55440809 55440829 -64304069 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 676 284 82 35 chr13 55441119 55441570 -64303328 + MER69 DNA AcHobo 1887 2358 -168 884 150 69 17 chr13 55441571 55441744 -64303154 - Tigger1 DNA MER2_type -1 2417 2236 243 160 32 0 chr13 55441745 55441839 -64303059 + (TA)n Simple_repeat Simple_repeat 1 97 0 419 296 99 31 chr13 55441942 55442237 -64302661 + L1ME2 LINE L1 5383 5698 -466 201 195 0 0 chr13 55442239 55442280 -64302618 + (TA)n Simple_repeat Simple_repeat 2 42 0 937 231 41 7 chr13 55442303 55442572 -64302326 + L1ME2 LINE L1 5699 5976 -188 1030 257 196 36 chr13 55442792 55443375 -64301523 + L1MC4 LINE L1 6418 7093 -949 1081 281 89 17 chr13 55443413 55443930 -64300968 + L1MC4 LINE L1 7213 7766 -276 257 280 72 48 chr13 55443935 55444142 -64300756 + L1MC4 LINE L1 7822 8033 -9 246 201 14 29 chr13 55446268 55446348 -64298550 + A-rich Low_complexity Low_complexity 2 137 0 22 0 0 0 chr13 55446354 55446376 -64298522 + AT_rich Low_complexity Low_complexity 1 22 0 185 278 19 19 chr13 55446376 55446430 -64298468 + L2 LINE L2 3209 3262 -10 23 54 0 0 chr13 55446447 55446484 -64298414 + AT_rich Low_complexity Low_complexity 1 37 0 252 0 0 0 chr13 55446517 55446545 -64298353 + (TG)n Simple_repeat Simple_repeat 1 28 0 248 259 104 108 chr13 55447413 55447664 -64297234 + MLT1J LTR MaLR 62 311 -200 22 35 0 0 chr13 55447702 55447731 -64297167 + AT_rich Low_complexity Low_complexity 1 29 0 243 321 0 0 chr13 55447840 55447921 -64296977 - MLT1J LTR MaLR -25 486 406 782 102 25 0 chr13 55448527 55448645 -64296253 + L1P3 LINE L1 5647 5767 -405 856 115 18 12 chr13 55448718 55448883 -64296015 + GA-rich Low_complexity Low_complexity 2 167 0 480 115 21 21 chr13 55448899 55448995 -64295903 + GA-rich Low_complexity Low_complexity 1 96 0 24 0 0 0 chr13 55449142 55449166 -64295732 + AT_rich Low_complexity Low_complexity 1 24 0 409 284 34 51 chr13 55449555 55449731 -64295167 + MLT1L LTR MaLR 19 191 -424 709 229 34 34 chr13 55450271 55450476 -64294422 - MER3 DNA MER1_type -4 205 1 696 207 46 23 chr13 55450511 55450685 -64294213 + MER58A DNA MER1_type 47 224 0 201 274 42 95 chr13 55451460 55451555 -64293343 + MIR SINE MIR 9 98 -164 1119 140 9 5 chr13 55452000 55452208 -64292690 - L1M2 LINE L1 -571 5720 5508 256 326 0 0 chr13 55452217 55452306 -64292592 + MIR SINE MIR 164 252 -10 3187 193 23 51 chr13 55452478 55453267 -64291631 - L1MA10 LINE L1 -2 6332 5566 332 284 32 0 chr13 55453273 55453368 -64291530 - MER52A LTR ERV1 -3 1752 1655 32387 152 37 31 chr13 55453369 55453589 -64291309 - MER52A-int LTR ERV1 -6 7085 6868 3131 102 25 0 chr13 55453589 55454031 -64290867 - MLT2A2 LTR ERVL 0 453 1 32387 152 37 31 chr13 55454031 55454548 -64290350 - MER52A-int LTR ERV1 -223 6868 6356 1974 150 20 0 chr13 55454548 55454848 -64290050 + AluSg SINE Alu 3 308 -2 32387 152 37 31 chr13 55454848 55456484 -64288414 - MER52A-int LTR ERV1 -735 6356 4732 2193 106 0 31 chr13 55456484 55456805 -64288093 - AluY SINE Alu 0 311 1 32387 152 37 31 chr13 55456805 55457367 -64287531 - MER52A-int LTR ERV1 -2359 4732 4175 2255 135 0 6 chr13 55457367 55457722 -64287176 + THE1A LTR MaLR 3 355 0 10634 113 30 0 chr13 55457722 55459256 -64285642 + THE1A-int LTR MaLR 1 1580 0 2212 136 14 17 chr13 55459256 55459610 -64285288 + THE1A LTR MaLR 1 353 -2 32387 152 37 31 chr13 55459610 55459855 -64285043 - MER52A-int LTR ERV1 -2916 4175 3933 1867 174 0 3 chr13 55459855 55460160 -64284738 - AluSx SINE Alu -3 309 6 32387 152 37 31 chr13 55460160 55462710 -64282188 - MER52A-int LTR ERV1 -3158 3933 1313 837 141 34 102 chr13 55462725 55462902 -64281996 - MER52A-int LTR ERV1 -5974 1117 953 * 6469 175 34 47 chr13 55462896 55463109 -64281789 - MER52A-int LTR ERV1 -5789 1302 1088 2331 153 3 0 chr13 55463109 55463481 -64281417 - THE1C LTR MaLR -2 373 1 6469 175 34 47 chr13 55463481 55464574 -64280324 - MER52A-int LTR ERV1 -6003 1088 30 635 282 54 76 chr13 55464579 55465394 -64279504 - MER52A LTR ERV1 0 1755 276 1263 301 62 23 chr13 55465914 55466635 -64278263 - HERVI LTR ERV1 -138 7647 3819 444 298 28 37 chr13 55466862 55467077 -64277821 - HERVI LTR ERV1 -1111 5538 5326 325 269 25 25 chr13 55467493 55467612 -64277286 - HERVI LTR ERV1 -1796 4853 4735 647 336 8 4 chr13 55467843 55468105 -64276793 - HERVI LTR ERV1 -2029 5756 5494 3515 123 48 26 chr13 55468105 55468684 -64276214 + LTR14B LTR ERVK 17 608 0 1711 323 41 45 chr13 55468714 55470066 -64274832 - HERVI LTR ERV1 -2316 5469 4124 2741 315 48 40 chr13 55470105 55472787 -64272111 - HERVI LTR ERV1 -3673 4112 1000 558 325 5 10 chr13 55472945 55473148 -64271750 - HERVI LTR ERV1 -6782 1003 802 331 278 69 14 chr13 55473493 55473637 -64271261 - HERVI LTR ERV1 -6282 367 216 713 261 6 9 chr13 55474317 55474471 -64270427 - MER52A LTR ERV1 -534 800 603 9980 252 73 34 chr13 55474472 55480222 -64264676 - L1M2 LINE L1 -745 5465 9 1139 204 26 0 chr13 55480351 55480577 -64264321 + L1MC5 LINE L1 5463 5694 -2091 326 309 83 29 chr13 55480579 55480783 -64264115 + L1ME LINE L1 5586 5800 -321 25 0 0 0 chr13 55480820 55480845 -64264053 + AT_rich Low_complexity Low_complexity 1 25 0 34 42 0 0 chr13 55481020 55481068 -64263830 + AT_rich Low_complexity Low_complexity 1 48 0 14807 115 19 4 chr13 55481581 55484648 -64260250 + L1PA8 LINE L1 3085 6172 0 34 72 0 0 chr13 55485332 55485401 -64259497 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr13 55485702 55485723 -64259175 + AT_rich Low_complexity Low_complexity 1 21 0 369 306 139 6 chr13 55486269 55486449 -64258449 + L1MC5 LINE L1 6639 6842 -1119 2882 269 23 20 chr13 55486458 55487491 -64257407 + L1M4 LINE L1 4103 5138 -1008 261 119 0 0 chr13 55487536 55487578 -64257320 + (CA)n Simple_repeat Simple_repeat 1 42 0 1485 139 16 0 chr13 55487606 55487857 -64257041 - HSMAR2 DNA Mariner -1 1301 1047 487 206 0 9 chr13 55487856 55487963 -64256935 + MSTB LTR MaLR 317 422 -4 * 1696 166 9 12 chr13 55487963 55488288 -64256610 - HSMAR2 DNA Mariner -878 424 101 573 274 0 14 chr13 55488283 55488429 -64256469 - MLT2B1 LTR ERVL -66 454 311 * 22 80 0 0 chr13 55488471 55488521 -64256377 + AT_rich Low_complexity Low_complexity 1 50 0 2380 266 105 25 chr13 55489155 55491544 -64253354 + L1MB2 LINE L1 803 3273 -3109 * 2980 209 52 12 chr13 55491543 55492335 -64252563 - L1PA16 LINE L1 -705 5460 4635 4278 153 10 3 chr13 55492335 55493059 -64251839 + L1PA16 LINE L1 5438 6166 0 1325 235 58 23 chr13 55493063 55493594 -64251304 + L1MB2 LINE L1 3268 3817 -2565 1629 237 67 78 chr13 55493610 55494162 -64250736 - MLT2B3 LTR ERVL -7 547 2 300 53 0 0 chr13 55494170 55494208 -64250690 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 246 239 0 0 chr13 55494219 55494265 -64250633 + L1MB2 LINE L1 3865 3910 -2472 306 318 204 7 chr13 55494267 55494575 -64250323 + L1PA12 LINE L1 1 369 -7212 625 193 35 14 chr13 55495345 55495455 -64249443 + L1PA12 LINE L1 2714 2829 -4745 1763 160 15 15 chr13 55495455 55495780 -64249118 + L1PA13 LINE L1 5832 6156 -7 625 193 35 14 chr13 55495780 55495814 -64249084 + L1PA12 LINE L1 2829 2861 -4713 * 4356 225 52 64 chr13 55495803 55497546 -64247352 + L1MB2 LINE L1 3918 5619 -788 2378 94 0 0 chr13 55497546 55497844 -64247054 + AluSq SINE Alu 1 298 -15 4356 225 52 64 chr13 55497844 55498509 -64246389 + L1MB2 LINE L1 5619 6291 -116 23 0 0 0 chr13 55498932 55498955 -64245943 + AT_rich Low_complexity Low_complexity 1 23 0 1652 65 0 0 chr13 55499109 55499309 -64245589 - AluY SINE Alu -13 298 99 334 228 50 50 chr13 55499643 55499744 -64245154 - MER94 DNA DNA -33 101 1 219 224 0 0 chr13 55499794 55499852 -64245046 + (TG)n Simple_repeat Simple_repeat 2 59 0 835 191 64 0 chr13 55499934 55500122 -64244776 + L1MA8 LINE L1 6075 6274 -17 3536 153 37 98 chr13 55500125 55500375 -64244523 + L1PB4 LINE L1 5347 5611 -545 529 95 0 0 chr13 55500375 55500449 -64244449 - MADE1 DNA Mariner 0 80 7 3536 153 37 98 chr13 55500449 55500980 -64243918 + L1PB4 LINE L1 5611 6149 -7 397 311 121 32 chr13 55502226 55502474 -64242424 + MLT1I LTR MaLR 2 271 -138 753 159 6 104 chr13 55502775 55502904 -64241994 + L1PA16 LINE L1 5994 6101 -65 1828 183 89 2 chr13 55502904 55503298 -64241600 + MSTA LTR MaLR 1 428 0 753 159 6 104 chr13 55503298 55503350 -64241548 + L1PA16 LINE L1 6101 6157 -9 281 335 37 43 chr13 55503393 55503554 -64241344 + L2 LINE L2 3152 3311 -2 2498 64 0 6 chr13 55504750 55505062 -64239836 + AluY SINE Alu 1 310 -1 445 314 101 49 chr13 55505200 55505487 -64239411 + L3 LINE CR1 562 863 -714 22 0 0 0 chr13 55505911 55505933 -64238965 + AT_rich Low_complexity Low_complexity 1 22 0 218 308 103 56 chr13 55505970 55506077 -64238821 - L2 LINE L2 -18 3295 3184 24 77 0 0 chr13 55506375 55506427 -64238471 + AT_rich Low_complexity Low_complexity 1 52 0 2020 224 121 40 chr13 55507050 55507676 -64237222 + L1MC3 LINE L1 6705 7381 -404 750 261 70 83 chr13 55507676 55508644 -64236254 + MER52A LTR ERV1 659 1755 0 1151 188 93 73 chr13 55508645 55508798 -64236100 + L1MC3 LINE L1 7380 7528 -257 2516 58 0 0 chr13 55508798 55509108 -64235790 + AluY SINE Alu 1 310 -1 1151 188 93 73 chr13 55509108 55509352 -64235546 + L1MC3 LINE L1 7528 7785 0 26 30 0 0 chr13 55510014 55510047 -64234851 + AT_rich Low_complexity Low_complexity 1 33 0 218 279 0 0 chr13 55510156 55510199 -64234699 - MIR SINE MIR -141 121 79 22 35 0 0 chr13 55510762 55510791 -64234107 + AT_rich Low_complexity Low_complexity 1 29 0 2341 138 55 26 chr13 55510791 55510945 -64233953 - L1MA3 LINE L1 0 6305 6157 299 25 25 0 chr13 55510945 55510985 -64233913 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1839 145 3 11 chr13 55510985 55511268 -64233630 - AluSx SINE Alu -28 284 4 2341 138 55 26 chr13 55511268 55511567 -64233331 - L1MA3 LINE L1 -147 6158 5838 23 0 0 0 chr13 55512978 55513001 -64231897 + AT_rich Low_complexity Low_complexity 1 23 0 213 94 0 0 chr13 55513267 55513299 -64231599 + (TA)n Simple_repeat Simple_repeat 1 32 0 2328 64 3 64 chr13 55513727 55514057 -64230841 - AluY SINE Alu 0 311 2 936 200 0 0 chr13 55514445 55514615 -64230283 - AluSg/x SINE Alu -6 306 137 2113 109 0 0 chr13 55514744 55515074 -64229824 + AluSx SINE Alu 1 330 0 23 33 0 0 chr13 55515074 55515104 -64229794 + AT_rich Low_complexity Low_complexity 1 30 0 223 269 11 11 chr13 55516645 55516738 -64228160 + (TA)n Simple_repeat Simple_repeat 1 93 0 309 284 154 35 chr13 55516817 55517155 -64227743 - L1M4 LINE L1 -2919 3227 2850 3803 214 66 15 chr13 55517288 55517721 -64227177 - L1 LINE L1 -1197 4949 4539 2324 87 0 3 chr13 55517721 55518031 -64226867 - AluY SINE Alu -2 309 1 3803 214 66 15 chr13 55518031 55518581 -64226317 - L1 LINE L1 -1607 4539 3916 4179 194 55 37 chr13 55518589 55518647 -64226251 + L1MA9 LINE L1 5256 5311 -1001 2091 92 4 7 chr13 55518647 55518956 -64225942 - AluY SINE Alu 0 308 1 4179 194 55 37 chr13 55518956 55519933 -64224965 + L1MA9 LINE L1 5311 6312 0 413 290 66 39 chr13 55520208 55520467 -64224431 - L1 LINE L1 -3734 2412 2147 655 225 0 0 chr13 55520880 55521022 -64223876 - L1MA3 LINE L1 0 6305 6164 4437 61 5 0 chr13 55521637 55522210 -64222688 - L1PA8 LINE L1 0 6172 5597 230 0 0 0 chr13 55522443 55522471 -64222427 + L1PA6 LINE L1 6118 6145 -9 23 0 0 0 chr13 55522785 55522808 -64222090 + AT_rich Low_complexity Low_complexity 1 23 0 427 134 61 0 chr13 55523462 55523544 -64221354 + L1PA13 LINE L1 6073 6159 -4 543 261 30 60 chr13 55523830 55524098 -64220800 + L1MA9 LINE L1 6015 6274 -38 21 57 0 0 chr13 55524360 55524395 -64220503 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr13 55524474 55524509 -64220389 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 55525129 55525157 -64219741 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 55526482 55526506 -64218392 + AT_rich Low_complexity Low_complexity 1 24 0 23 78 0 0 chr13 55526832 55526883 -64218015 + AT_rich Low_complexity Low_complexity 1 51 0 308 278 0 10 chr13 55527035 55527132 -64217766 - L1M4 LINE L1 -3727 2419 2324 30 45 0 0 chr13 55527297 55527341 -64217557 + AT_rich Low_complexity Low_complexity 1 44 0 27 92 0 0 chr13 55527407 55527483 -64217415 + AT_rich Low_complexity Low_complexity 1 76 0 1050 212 106 66 chr13 55527781 55528130 -64216768 + MLT1A1 LTR MaLR 1 363 -2 25 0 0 0 chr13 55528201 55528226 -64216672 + AT_rich Low_complexity Low_complexity 1 25 0 197 319 50 69 chr13 55528464 55528624 -64216274 - L3 LINE CR1 -10 1567 1411 26 0 0 0 chr13 55528806 55528832 -64216066 + AT_rich Low_complexity Low_complexity 1 26 0 5726 232 31 48 chr13 55531434 55532759 -64212139 + L1MC3 LINE L1 4568 5915 -231 1882 135 47 47 chr13 55532759 55533123 -64211775 - THE1B LTR MaLR 0 364 1 10010 128 29 4 chr13 55533123 55534664 -64210234 - THE1B-int LTR MaLR 0 1580 1 2149 123 47 33 chr13 55534664 55535023 -64209875 - THE1B LTR MaLR 0 364 1 5726 232 31 48 chr13 55535023 55535995 -64208903 + L1MC3 LINE L1 4415 5403 -743 3693 190 46 9 chr13 55536685 55537374 -64207524 + MER44D DNA MER2_type 9 595 -10 23 0 0 0 chr13 55537643 55537666 -64207232 + AT_rich Low_complexity Low_complexity 1 23 0 225 239 0 30 chr13 55537854 55537921 -64206977 + GA-rich Low_complexity Low_complexity 4 68 0 25 0 0 0 chr13 55538561 55538586 -64206312 + AT_rich Low_complexity Low_complexity 1 25 0 24 77 0 0 chr13 55539267 55539319 -64205579 + AT_rich Low_complexity Low_complexity 1 52 0 256 246 86 80 chr13 55539671 55539846 -64205052 - ORSL DNA AcHobo -1 274 99 549 44 0 0 chr13 55539857 55539925 -64204973 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1029 208 0 41 chr13 55539984 55540205 -64204693 - AluJo SINE Alu -100 212 1 313 171 0 73 chr13 55540207 55540289 -64204609 - ORSL DNA AcHobo -186 89 14 25 31 0 0 chr13 55540848 55540880 -64204018 + AT_rich Low_complexity Low_complexity 1 32 0 613 330 50 4 chr13 55540905 55541163 -64203735 - HERVL LTR ERVL -1514 4140 3871 615 133 0 0 chr13 55541369 55541467 -64203431 - L1PB4 LINE L1 -6 6150 6053 474 204 29 0 chr13 55541660 55541763 -64203135 - MER5A DNA MER1_type -77 112 7 257 279 148 25 chr13 55541798 55541920 -64202978 - HERVL LTR ERVL -2984 2780 2644 523 269 44 47 chr13 55542570 55542867 -64202031 + L1MDa LINE L1 1295 1590 -4950 22 35 0 0 chr13 55544841 55544870 -64200028 + AT_rich Low_complexity Low_complexity 1 29 0 776 223 100 120 chr13 55545415 55545904 -64198994 + LTR28 LTR ERV1 1 602 -418 1113 243 104 25 chr13 55545911 55546442 -64198456 + L1M4 LINE L1 3528 4100 -2046 343 277 47 43 chr13 55546476 55546711 -64198187 + L1M4 LINE L1 4178 4413 -1733 4132 187 39 23 chr13 55546750 55547633 -64197265 + L1ME1 LINE L1 20 916 -5468 508 162 20 0 chr13 55547635 55547734 -64197164 + L1ME1 LINE L1 1274 1374 -5010 1725 180 17 11 chr13 55547748 55548098 -64196800 - L1MC1 LINE L1 -255 6078 5727 3660 236 216 39 chr13 55548136 55548396 -64196502 - L1M1 LINE L1 -4485 2621 2408 1215 104 11 127 chr13 55548396 55548656 -64196242 + MER30 DNA MER1_type 1 230 0 3660 236 216 39 chr13 55548656 55549745 -64195153 - L1M1 LINE L1 -4698 2408 1513 2339 181 19 2 chr13 55549745 55550166 -64194732 - MSTA LTR MaLR 0 428 1 3660 236 216 39 chr13 55550166 55551315 -64193583 - L1M1 LINE L1 -5593 1513 1 26 74 0 0 chr13 55552400 55552454 -64192444 + AT_rich Low_complexity Low_complexity 1 54 0 598 235 0 37 chr13 55553845 55553981 -64190917 - FLAM_C SINE Alu -2 131 1 206 182 124 16 chr13 55554058 55554179 -64190719 + (CTAAT)n Simple_repeat Simple_repeat 4 137 0 576 306 17 0 chr13 55554591 55554771 -64190127 - L2 LINE L2 -526 2788 2606 2302 56 0 56 chr13 55554885 55555207 -64189691 + AluY SINE Alu 1 304 -7 1078 271 62 39 chr13 55555556 55556308 -64188590 + L1ME1 LINE L1 2961 3730 -2652 823 258 51 60 chr13 55556314 55556667 -64188231 + MLT1A1 LTR MaLR 16 365 0 763 254 70 0 chr13 55556675 55556919 -64187979 + L1ME1 LINE L1 3733 3993 -2389 346 93 74 0 chr13 55556947 55557055 -64187843 + (TA)n Simple_repeat Simple_repeat 1 116 0 38 0 0 0 chr13 55557101 55557139 -64187759 + AT_rich Low_complexity Low_complexity 1 38 0 819 266 142 40 chr13 55557147 55557662 -64187236 + L1ME1 LINE L1 4034 4637 -1745 2090 135 0 0 chr13 55557662 55557959 -64186939 - AluSx SINE Alu -15 297 1 819 266 142 40 chr13 55557959 55558124 -64186774 + L1ME1 LINE L1 4637 4784 -1598 279 0 0 0 chr13 55558124 55558155 -64186743 + (TG)n Simple_repeat Simple_repeat 2 32 0 906 265 78 30 chr13 55558187 55558723 -64186175 + L1ME1 LINE L1 4962 5523 -859 2443 304 44 25 chr13 55558750 55559444 -64185454 + L1MB7 LINE L1 -283 429 -6117 1832 160 4 0 chr13 55559444 55559746 -64185152 - AluSq SINE Alu 0 303 1 2443 304 44 25 chr13 55559746 55559807 -64185091 + L1MB7 LINE L1 429 487 -6059 1588 251 60 27 chr13 55559816 55560831 -64184067 + L1MB7 LINE L1 877 2084 -4741 232 246 0 0 chr13 55560892 55560949 -64183949 + L1MB7 LINE L1 4187 4243 -2401 2222 211 51 16 chr13 55560971 55561283 -64183615 + L1MB7 LINE L1 5428 5728 -954 910 250 104 24 chr13 55561283 55561619 -64183279 - MLT1A1 LTR MaLR 0 365 3 2222 211 51 16 chr13 55561619 55562187 -64182711 + L1MB7 LINE L1 5728 6336 -346 626 239 0 0 chr13 55562212 55562329 -64182569 + FRAM SINE Alu 35 151 -25 888 184 6 6 chr13 55562361 55562540 -64182358 + L1MB7 LINE L1 6503 6681 -1 2043 246 44 80 chr13 55562542 55563461 -64181437 + L1ME1 LINE L1 5521 6383 -19 2457 64 0 3 chr13 55563636 55563948 -64180950 + AluY SINE Alu 1 311 0 430 332 34 42 chr13 55566505 55566743 -64178155 + MLT1H LTR MaLR 43 278 -271 6003 112 10 1 chr13 55567236 55568361 -64176537 + L1PA13 LINE L1 5030 6163 0 26 30 0 0 chr13 55570575 55570608 -64174290 + AT_rich Low_complexity Low_complexity 1 33 0 674 238 21 0 chr13 55570611 55570795 -64174103 + AluJb SINE Alu 138 324 0 1827 152 76 0 chr13 55570796 55571099 -64173799 - LTR17 LTR ERV1 0 780 455 3337 64 0 7 chr13 55571100 55571551 -64173347 + LTR7 LTR ERV1 1 448 -2 19349 91 25 34 chr13 55571553 55574574 -64170324 + HERVH LTR ERV1 1 2995 -4718 6118 89 3 0 chr13 55574553 55575404 -64169494 + HERVH LTR ERV1 3140 3993 -3720 * 4281 148 1 1 chr13 55575406 55576068 -64168830 + HERVH LTR ERV1 4488 5149 -2564 1327 121 17 52 chr13 55576065 55576296 -64168602 + HERVH LTR ERV1 5597 5819 -1894 * 2390 97 45 13 chr13 55576294 55576674 -64168224 + HERVH LTR ERV1 7322 7713 0 3252 69 2 9 chr13 55576674 55577125 -64167773 + LTR7 LTR ERV1 1 448 -2 3084 117 2 11 chr13 55577127 55577589 -64167309 - LTR17 LTR ERV1 -322 458 1 900 138 6 11 chr13 55577853 55578027 -64166871 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 25 90 0 0 chr13 55578079 55578146 -64166752 + AT_rich Low_complexity Low_complexity 1 67 0 344 332 46 38 chr13 55578514 55578752 -64166146 + Charlie8 DNA MER1_type 7 246 -2171 21 36 0 0 chr13 55578880 55578908 -64165990 + AT_rich Low_complexity Low_complexity 1 28 0 523 189 18 0 chr13 55579035 55579146 -64165752 - L1MA8 LINE L1 -10 6281 6169 29 0 0 0 chr13 55579838 55579867 -64165031 + AT_rich Low_complexity Low_complexity 1 29 0 313 242 98 39 chr13 55579930 55580083 -64164815 + L1ME4a LINE L1 5707 5868 -253 376 343 183 27 chr13 55580122 55580766 -64164132 - L2 LINE L2 -5 3308 1528 24 67 0 0 chr13 55583680 55583725 -64161173 + AT_rich Low_complexity Low_complexity 1 45 0 217 217 14 14 chr13 55585809 55585878 -64159020 + (TATG)n Simple_repeat Simple_repeat 3 71 0 1569 205 3 3 chr13 55586066 55586363 -64158535 + AluJo SINE Alu 15 311 -1 2487 69 110 90 chr13 55589756 55589797 -64155101 - MLT2A1 LTR ERVL 0 444 405 1078 99 0 11 chr13 55589797 55589979 -64154919 + (TA)n Simple_repeat Simple_repeat 1 180 0 2487 69 110 90 chr13 55589979 55590372 -64154526 - MLT2A1 LTR ERVL -39 405 1 839 265 34 0 chr13 55590622 55590856 -64154042 - MER58 DNA MER1_type -90 251 10 1630 253 82 21 chr13 55590953 55591439 -64153459 - MLT1E2 LTR MaLR 0 626 111 947 264 158 64 chr13 55591783 55592302 -64152596 - MLT1G1 LTR MaLR -27 568 1 598 248 4 91 chr13 55593837 55594079 -64150819 + L2 LINE L2 3088 3308 -5 649 76 19 9 chr13 55594082 55594187 -64150711 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 356 164 31 23 chr13 55594290 55594418 -64150480 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 1820 158 14 0 chr13 55594505 55594797 -64150101 + AluSx SINE Alu 5 300 -12 22 35 0 0 chr13 55595850 55595879 -64149019 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 55596375 55596404 -64148494 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr13 55596824 55596856 -64148042 + AT_rich Low_complexity Low_complexity 1 32 0 36 62 0 0 chr13 55597108 55597172 -64147726 + AT_rich Low_complexity Low_complexity 1 64 0 835 146 0 15 chr13 55598401 55598538 -64146360 + AluSg/x SINE Alu 176 310 -2 24 0 0 0 chr13 55598914 55598938 -64145960 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 55601800 55601821 -64143077 + AT_rich Low_complexity Low_complexity 1 21 0 342 309 83 24 chr13 55601944 55602112 -64142786 - MIR SINE MIR -70 192 15 202 373 82 0 chr13 55602119 55602229 -64142669 + L2 LINE L2 3148 3266 -6 21 0 0 0 chr13 55603040 55603061 -64141837 + AT_rich Low_complexity Low_complexity 1 21 0 354 23 0 0 chr13 55604072 55604115 -64140783 + (CA)n Simple_repeat Simple_repeat 2 44 0 32 0 0 0 chr13 55604590 55604622 -64140276 + AT_rich Low_complexity Low_complexity 1 32 0 327 25 0 0 chr13 55604744 55604784 -64140114 + (TG)n Simple_repeat Simple_repeat 2 41 0 1388 236 73 47 chr13 55605882 55606374 -64138524 - MLT1D LTR MaLR 0 505 1 1756 153 177 11 chr13 55606893 55607260 -64137638 - MSTA LTR MaLR 0 428 1 26 74 0 0 chr13 55607395 55607449 -64137449 + AT_rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr13 55609886 55609916 -64134982 + AT_rich Low_complexity Low_complexity 1 30 0 216 236 0 18 chr13 55610381 55610436 -64134462 + (TA)n Simple_repeat Simple_repeat 2 55 0 328 319 30 71 chr13 55610671 55610840 -64134058 + MIR SINE MIR 35 196 -66 234 0 0 0 chr13 55611535 55611561 -64133337 + (GA)n Simple_repeat Simple_repeat 2 27 0 248 294 102 59 chr13 55611577 55611951 -64132947 - Tigger8 DNA MER2_type -165 501 112 1016 269 101 27 chr13 55612812 55613177 -64131721 + MSTD LTR MaLR 1 392 -4 1211 120 0 0 chr13 55613501 55613668 -64131230 + AluSg/x SINE Alu 137 303 -9 239 330 27 36 chr13 55613720 55613832 -64131066 - L2 LINE L2 -334 2938 2828 940 137 68 0 chr13 55613968 55614129 -64130769 - Tigger5 DNA MER2_type 0 2323 2152 589 216 0 0 chr13 55614121 55614232 -64130666 - Tigger5 DNA MER2_type -2206 117 7 * 280 206 10 10 chr13 55614342 55614439 -64130459 + GA-rich Low_complexity Low_complexity 4 100 0 1099 203 90 69 chr13 55614620 55615009 -64129889 + MER39 LTR ERV1 311 707 0 343 172 11 11 chr13 55615022 55615109 -64129789 + GA-rich Low_complexity Low_complexity 3 89 0 26 50 0 0 chr13 55616012 55616052 -64128846 + AT_rich Low_complexity Low_complexity 1 40 0 26 64 0 0 chr13 55616077 55616124 -64128774 + AT_rich Low_complexity Low_complexity 1 47 0 1252 273 47 93 chr13 55616742 55617313 -64127585 + MER77 LTR ERV1 55 599 -6 1748 161 174 8 chr13 55617496 55617863 -64127035 + MSTA LTR MaLR 1 428 0 8367 184 26 12 chr13 55617863 55619490 -64125408 + MSTA-int LTR MaLR 1 1651 0 1701 161 151 6 chr13 55619490 55619814 -64125084 + MSTA LTR MaLR 1 371 -57 2215 103 0 3 chr13 55620004 55620306 -64124592 + AluSq SINE Alu 1 301 -12 2193 157 32 71 chr13 55620688 55621180 -64123718 - L1MA4A LINE L1 -3 6300 5828 315 132 176 22 chr13 55621187 55621278 -64123620 + L1MC4 LINE L1 6617 6721 -1321 246 265 102 31 chr13 55621203 55621301 -64123597 - L1MC4 LINE L1 -1323 6719 6615 * 1598 179 7 3 chr13 55621311 55621602 -64123296 - L1MA4A LINE L1 -523 5777 5486 195 373 0 0 chr13 55621908 55621983 -64122915 - MIR SINE MIR -82 126 52 24 0 0 0 chr13 55622996 55623020 -64121878 + AT_rich Low_complexity Low_complexity 1 24 0 478 159 20 17 chr13 55623340 55623361 -64121537 - L1M1 LINE L1 -811 5492 5473 890 164 0 11 chr13 55623361 55623538 -64121360 - L1MA5 LINE L1 -2 6298 6124 478 159 20 17 chr13 55623538 55623643 -64121255 - L1M1 LINE L1 -830 5473 5369 1186 117 0 0 chr13 55623643 55623805 -64121093 - AluSp SINE Alu -18 295 134 641 233 43 95 chr13 55624145 55624377 -64120521 + AluJo SINE Alu 93 312 0 33 25 0 0 chr13 55624456 55624496 -64120402 + AT_rich Low_complexity Low_complexity 1 40 0 281 264 47 23 chr13 55624549 55624678 -64120220 - HAL1 LINE L1 -56 2451 2320 22 0 0 0 chr13 55624786 55624808 -64120090 + AT_rich Low_complexity Low_complexity 1 22 0 252 208 23 27 chr13 55624913 55625004 -64119894 + HsTC2 DNA Tc2 1803 1896 -2 313 355 29 41 chr13 55625354 55625596 -64119302 - HAL1 LINE L1 -782 1725 1487 264 288 56 69 chr13 55625660 55625893 -64119005 - HAL1 LINE L1 -1047 1460 1231 21 0 0 0 chr13 55626344 55626365 -64118533 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr13 55627657 55627697 -64117201 + AT_rich Low_complexity Low_complexity 1 40 0 428 35 17 0 chr13 55628746 55628804 -64116094 + (TC)n Simple_repeat Simple_repeat 2 60 0 * 433 168 26 26 chr13 55628803 55628958 -64115940 + (TA)n Simple_repeat Simple_repeat 2 156 0 2050 200 54 7 chr13 55629060 55629465 -64115433 - MSTB LTR MaLR 0 426 3 7001 195 65 33 chr13 55629471 55631067 -64113831 - MSTB-int LTR MaLR -4 1647 1 1602 246 57 2 chr13 55631067 55631473 -64113425 - MSTA LTR MaLR 0 428 1 2575 52 0 0 chr13 55631641 55631951 -64112947 - AluY SINE Alu -1 310 1 357 316 75 32 chr13 55632012 55632199 -64112699 + MIR SINE MIR 50 244 -18 1020 263 49 42 chr13 55632377 55632803 -64112095 - MER110A LTR ERV1 0 468 40 3901 280 70 44 chr13 55633095 55634866 -64110032 - MER110-int LTR ERV1 -458 4189 2373 1102 193 89 55 chr13 55634980 55635306 -64109592 + MER2 DNA MER2_type 9 345 0 1146 311 68 54 chr13 55635325 55635737 -64109161 - MER110-int LTR ERV1 -2441 2206 1801 1728 155 58 22 chr13 55635737 55636099 -64108799 - THE1C LTR MaLR 0 375 1 1146 311 68 54 chr13 55636099 55636237 -64108661 - MER110-int LTR ERV1 -2846 1801 1666 2380 90 0 3 chr13 55636237 55636547 -64108351 - AluSx SINE Alu 0 312 4 1146 311 68 54 chr13 55636547 55636808 -64108090 - MER110-int LTR ERV1 -2981 1666 1383 481 370 46 27 chr13 55636900 55637338 -64107560 - MER110-int LTR ERV1 -3244 3557 3112 572 296 90 85 chr13 55637547 55638158 -64106740 - MER110-int LTR ERV1 -3868 779 166 2881 253 43 23 chr13 55638191 55639431 -64105467 - L1M4 LINE L1 -2029 4615 3351 491 308 0 0 chr13 55639431 55639561 -64105337 + Tigger3(Golem) DNA MER2_type 1 130 -2899 1304 183 33 0 chr13 55639621 55639861 -64105037 + Tigger3(Golem) DNA MER2_type 2791 3038 0 1562 257 131 30 chr13 55639891 55640858 -64104040 - L1M4 LINE L1 -3324 3320 2177 3472 56 2 2 chr13 55640858 55641306 -64103592 + LTR7 LTR ERV1 1 448 -2 1562 257 131 30 chr13 55641306 55641650 -64103248 - L1M4 LINE L1 -4467 2177 1869 561 231 75 8 chr13 55641764 55641898 -64103000 - FLAM_C SINE Alu 0 143 1 409 299 13 0 chr13 55641900 55642057 -64102841 - L1M4 LINE L1 -4877 1665 1507 4964 179 26 19 chr13 55642103 55643286 -64101612 - L1MA3 LINE L1 0 6305 5114 3143 57 27 11 chr13 55643287 55643728 -64101170 - LTR7 LTR ERV1 -2 448 1 2356 93 50 13 chr13 55643728 55644106 -64100792 - HERVH LTR ERV1 0 7713 7322 1380 109 20 0 chr13 55644104 55644305 -64100593 - HERVH LTR ERV1 -1894 5819 5615 * 4151 147 8 1 chr13 55644330 55644988 -64099910 - HERVH LTR ERV1 -2564 5149 4488 3359 105 4 4 chr13 55644990 55645484 -64099414 - HERVH LTR ERV1 -3720 3993 3500 * 20572 86 58 31 chr13 55645483 55648684 -64096214 - HERVH LTR ERV1 -4423 3290 1 3291 75 0 7 chr13 55648686 55649137 -64095761 - LTR7 LTR ERV1 -2 448 1 1573 196 14 14 chr13 55649137 55649495 -64095403 - L1MA3 LINE L1 -1027 5119 4762 665 279 54 17 chr13 55649464 55649815 -64095083 - L1M4 LINE L1 -5056 1486 1123 * 1066 211 68 51 chr13 55649823 55650203 -64094695 - MER67C LTR ERV1 -13 501 152 725 300 113 70 chr13 55650252 55650476 -64094422 - L1M4 LINE L1 -5671 871 658 2309 86 0 3 chr13 55650476 55650777 -64094121 + AluY SINE Alu 1 300 -11 725 300 113 70 chr13 55650777 55651375 -64093523 - L1M4 LINE L1 -5884 658 14 194 62 31 0 chr13 55652432 55652464 -64092434 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1276 200 85 11 chr13 55653091 55653361 -64091537 - AluJo SINE Alu -22 290 1 3346 206 15 11 chr13 55654990 55655733 -64089165 - L1MB4 LINE L1 -8 6172 5427 204 381 7 43 chr13 55656703 55656842 -64088056 + L2 LINE L2 3137 3270 -2 2150 163 8 5 chr13 55657822 55658196 -64086702 - THE1C LTR MaLR 0 375 1 351 150 0 0 chr13 55658584 55658644 -64086254 + (TA)n Simple_repeat Simple_repeat 1 60 0 292 192 40 61 chr13 55658743 55658842 -64086056 - L1MC4 LINE L1 -1339 6703 6607 527 349 65 9 chr13 55660510 55660742 -64084156 + MIR SINE MIR 17 261 -1 312 207 24 0 chr13 55661517 55661599 -64083299 - L1MA8 LINE L1 -15 6276 6193 23 0 0 0 chr13 55661789 55661812 -64083086 + AT_rich Low_complexity Low_complexity 1 23 0 259 114 0 0 chr13 55662830 55662874 -64082024 - L1PA16 LINE L1 -9 6157 6114 2602 160 38 62 chr13 55663114 55663713 -64081185 + L1MA7 LINE L1 5707 6291 0 311 64 0 21 chr13 55663776 55663823 -64081075 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 579 385 20 6 chr13 55664098 55664443 -64080455 - ERVL LTR ERVL -659 5105 4756 306 182 0 0 chr13 55665072 55665138 -64079760 + GA-rich Low_complexity Low_complexity 1 66 0 546 338 115 24 chr13 55665319 55665772 -64079126 - ERVL LTR ERVL -1287 4367 3874 27 73 0 0 chr13 55666106 55666161 -64078737 + AT_rich Low_complexity Low_complexity 1 55 0 388 342 113 30 chr13 55666411 55666747 -64078151 - ERVL LTR ERVL -2397 3257 2894 514 360 55 25 chr13 55667071 55667507 -64077391 - ERVL LTR ERVL -3112 2542 2094 308 315 37 0 chr13 55668841 55668949 -64075949 - L2 LINE L2 0 3313 3202 1782 150 41 20 chr13 55668949 55669242 -64075656 + THE1B LTR MaLR 1 299 -65 3627 113 0 4 chr13 55669242 55669748 -64075150 + THE1-int LTR MaLR 1056 1559 -21 307 324 37 0 chr13 55670661 55670769 -64074129 - L2 LINE L2 0 3313 3202 1669 164 41 20 chr13 55670769 55671062 -64073836 + THE1B LTR MaLR 1 299 -65 2160 172 5 15 chr13 55671062 55671469 -64073429 + THE1-int LTR MaLR 1056 1458 -122 1127 344 135 15 chr13 55671589 55672042 -64072856 - L2 LINE L2 -514 2800 2403 1657 229 23 21 chr13 55672042 55672474 -64072424 - Tigger2a DNA MER2_type -1 433 1 1127 344 135 15 chr13 55672474 55672770 -64072128 - L2 LINE L2 -911 2403 1961 1771 192 34 15 chr13 55672777 55673176 -64071722 + MLT2A2 LTR ERVL 1 345 -108 21 0 0 0 chr13 55673847 55673868 -64071030 + AT_rich Low_complexity Low_complexity 1 21 0 357 320 119 18 chr13 55673940 55674159 -64070739 - MIR SINE MIR -7 255 15 308 315 37 0 chr13 55676430 55676538 -64068360 - L2 LINE L2 0 3313 3202 1782 150 41 20 chr13 55676538 55676831 -64068067 + THE1B LTR MaLR 1 299 -65 3717 114 2 4 chr13 55676831 55677357 -64067541 + THE1B-int LTR MaLR 1056 1580 0 2086 160 36 14 chr13 55677357 55677713 -64067185 + THE1B LTR MaLR 1 364 0 460 258 67 11 chr13 55678708 55678886 -64066012 + L2 LINE L2 1773 1960 -1354 1971 183 35 29 chr13 55678886 55679431 -64065467 - MLT2A2 LTR ERVL -2 552 1 1515 347 114 16 chr13 55679438 55679734 -64065164 + L2 LINE L2 1961 2227 -1086 1881 204 23 21 chr13 55679734 55680166 -64064732 + Tigger2a DNA MER2_type 1 433 -1 1515 347 114 16 chr13 55680166 55681052 -64063846 + L2 LINE L2 2227 3269 -44 285 406 0 0 chr13 55681110 55681233 -64063665 + L2 LINE L2 3150 3272 0 21 0 0 0 chr13 55681332 55681353 -64063545 + AT_rich Low_complexity Low_complexity 1 21 0 240 253 48 0 chr13 55681416 55681499 -64063399 + L1MC4 LINE L1 6615 6701 -1341 558 230 18 0 chr13 55681662 55681775 -64063123 - FLAM_A SINE Alu -16 126 12 1949 143 3 3 chr13 55682483 55682776 -64062122 + AluSx SINE Alu 4 296 -16 21 0 0 0 chr13 55682874 55682895 -64062003 + AT_rich Low_complexity Low_complexity 1 21 0 657 287 36 10 chr13 55685243 55685438 -64059460 + MLT1E LTR MaLR 41 240 -353 301 336 90 36 chr13 55685801 55686078 -64058820 + L2 LINE L2 3021 3312 -1 214 167 33 0 chr13 55686402 55686462 -64058436 + (TA)n Simple_repeat Simple_repeat 1 62 0 354 23 0 0 chr13 55687789 55687832 -64057066 + (TG)n Simple_repeat Simple_repeat 2 44 0 1295 184 19 99 chr13 55687863 55688228 -64056670 - MLT2C1 LTR ERVL -61 336 1 257 75 25 0 chr13 55688244 55688284 -64056614 + (TA)n Simple_repeat Simple_repeat 1 41 0 22 35 0 0 chr13 55688730 55688759 -64056139 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr13 55689875 55689922 -64054976 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr13 55689934 55689966 -64054932 + AT_rich Low_complexity Low_complexity 1 32 0 1544 151 125 20 chr13 55690087 55690392 -64054506 + MER1B DNA MER1_type 1 337 0 21 36 0 0 chr13 55690742 55690770 -64054128 + AT_rich Low_complexity Low_complexity 1 28 0 638 260 51 46 chr13 55691795 55691991 -64052907 + L2 LINE L2 2339 2535 -779 801 220 13 0 chr13 55691991 55692150 -64052748 + MER2 DNA MER2_type 1 161 -184 375 144 0 0 chr13 55692158 55692228 -64052670 + L1M2 LINE L1 5594 5663 -493 402 148 0 37 chr13 55692237 55692318 -64052580 + MER2 DNA MER2_type 188 265 -80 353 231 71 156 chr13 55693065 55693230 -64051668 - MER58B DNA MER1_type -2080 340 163 1958 138 0 25 chr13 55693230 55693550 -64051348 + AluSx SINE Alu 1 312 0 353 231 71 156 chr13 55693550 55693561 -64051337 - MER58B DNA MER1_type -2257 163 153 2039 132 0 0 chr13 55693561 55693890 -64051008 + AluSx SINE Alu 1 312 0 353 231 71 156 chr13 55693890 55693950 -64050948 - MER58B DNA MER1_type -2267 153 6 1861 312 31 18 chr13 55694063 55694743 -64050155 + L1MA6 LINE L1 399 1087 -6479 1382 231 22 70 chr13 55694925 55695097 -64049801 + L1MA6 LINE L1 2696 2875 -4691 1551 225 0 3 chr13 55695097 55695408 -64049490 + AluJb SINE Alu 1 310 -2 1382 231 22 70 chr13 55695408 55695799 -64049099 + L1MA6 LINE L1 2875 3406 -4160 812 153 0 24 chr13 55695792 55695943 -64048955 + L1PA16 LINE L1 5898 6148 -18 * 423 78 0 65 chr13 55695943 55696016 -64048882 + L1PA16 LINE L1 6095 6166 0 812 153 0 24 chr13 55696016 55696035 -64048863 + L1PA16 LINE L1 6148 6166 0 3102 237 15 39 chr13 55696046 55696353 -64048545 + L1MA6 LINE L1 3293 3606 -3959 676 118 18 0 chr13 55696353 55696463 -64048435 + L1MA1 LINE L1 6187 6298 -4 3102 237 15 39 chr13 55696463 55697319 -64047579 + L1MA6 LINE L1 3606 4434 -3131 1896 203 56 33 chr13 55697306 55697510 -64047388 + L1PB4 LINE L1 5697 5895 -261 * 1637 123 25 4 chr13 55697510 55697753 -64047145 + AluSx SINE Alu 54 301 -11 1896 203 56 33 chr13 55697753 55697997 -64046901 + L1PB4 LINE L1 5895 6155 -1 10312 196 17 21 chr13 55698000 55701045 -64043853 + L1MA6 LINE L1 4447 7479 -240 331 140 18 0 chr13 55701050 55701107 -64043791 + L1MB8 LINE L1 5932 5989 -189 912 148 28 22 chr13 55701579 55701761 -64043137 + L1MB8 LINE L1 5996 6178 0 1043 257 79 14 chr13 55703331 55703408 -64041490 + MLT1B LTR MaLR 1 72 -318 2089 125 3 3 chr13 55703408 55703711 -64041187 - AluSx SINE Alu -9 303 1 1043 257 79 14 chr13 55703711 55703724 -64041174 + MLT1B LTR MaLR 72 390 0 1079 236 87 4 chr13 55703724 55703999 -64040899 + MLT1B LTR MaLR 93 390 0 232 218 64 26 chr13 55703999 55704077 -64040821 - L1ME3A LINE L1 -13 6157 6077 2500 143 44 5 chr13 55704142 55704554 -64040344 - MSTA LTR MaLR 0 428 1 7802 190 30 23 chr13 55704554 55706193 -64038705 - MSTA-int LTR MaLR 0 1651 1 1148 128 18 82 chr13 55706193 55706261 -64038637 - MSTA LTR MaLR 0 428 357 2054 100 0 4 chr13 55706261 55706530 -64038368 + AluSc SINE Alu 37 304 -5 1148 128 18 82 chr13 55706530 55706680 -64038218 - MSTA LTR MaLR -71 357 224 701 111 0 0 chr13 55706689 55706788 -64038110 - MSTA LTR MaLR -329 99 1 1428 301 44 9 chr13 55706885 55707410 -64037488 - L1ME3A LINE L1 -258 5912 5370 23 33 0 0 chr13 55709408 55709438 -64035460 + AT_rich Low_complexity Low_complexity 1 30 0 401 196 127 82 chr13 55711262 55711420 -64033478 + MLT1J LTR MaLR 6 170 -341 560 319 62 36 chr13 55711979 55712315 -64032583 + MLT1J LTR MaLR 167 511 0 229 241 19 0 chr13 55712788 55712842 -64032056 + MLT1J1 LTR MaLR 84 138 -308 401 375 63 13 chr13 55713696 55713995 -64030903 + L1MEd LINE L1 350 663 -5456 928 253 52 57 chr13 55714005 55714373 -64030525 - MER74B LTR ERVL -68 554 189 2971 175 38 4 chr13 55715343 55715902 -64028996 + HSMAR2 DNA Mariner 718 1295 -7 1224 246 62 14 chr13 55715934 55716291 -64028607 - MLT1A2 LTR MaLR 0 374 1 623 209 0 0 chr13 55716426 55716560 -64028338 - L1PB3 LINE L1 -2285 3861 3728 * 6089 196 24 17 chr13 55716556 55718155 -64026743 + L1PB3 LINE L1 3891 5496 -658 1357 224 26 0 chr13 55718159 55718463 -64026435 + AluJb SINE Alu 7 317 0 3571 164 31 5 chr13 55718463 55719110 -64025788 + L1PB3 LINE L1 5487 6150 -4 313 348 32 32 chr13 55719378 55719533 -64025365 + MIR SINE MIR 5 159 -103 37 39 0 0 chr13 55719731 55719782 -64025116 + AT_rich Low_complexity Low_complexity 1 51 0 232 317 41 55 chr13 55720299 55720444 -64024454 - MIR SINE MIR -72 190 48 4349 178 40 11 chr13 55720590 55721432 -64023466 + L1PA8A LINE L1 1 867 -5008 * 23937 129 9 4 chr13 55721420 55725805 -64019093 + L1PA8A LINE L1 1742 6147 -299 618 250 8 48 chr13 55725822 55726090 -64018808 + pTR5 LTR ERV1 772 1028 -1410 4058 118 134 28 chr13 55726276 55727023 -64017875 + LTR12 LTR ERV1 1 826 0 890 70 84 3 chr13 55727023 55727145 -64017753 + LTR12 LTR ERV1 452 563 -151 2144 79 0 64 chr13 55727145 55727474 -64017424 + L1PA8 LINE L1 5863 6170 -2 890 70 84 3 chr13 55727474 55727490 -64017408 + LTR12 LTR ERV1 563 713 -1 337 429 16 4 chr13 55727580 55727834 -64017064 - MIR SINE MIR -2 260 4 1367 241 154 53 chr13 55727978 55728690 -64016208 + LTR1B LTR ERV1 1 983 -37 28 0 0 0 chr13 55728774 55728802 -64016096 + AT_rich Low_complexity Low_complexity 1 28 0 446 319 78 6 chr13 55728897 55729063 -64015835 - MIR SINE MIR -72 190 13 362 231 41 0 chr13 55729410 55729557 -64015341 + (TA)n Simple_repeat Simple_repeat 2 154 0 28 61 0 0 chr13 55729676 55729725 -64015173 + AT_rich Low_complexity Low_complexity 1 49 0 261 57 0 0 chr13 55732085 55732120 -64012778 + (TA)n Simple_repeat Simple_repeat 1 35 0 27 49 0 0 chr13 55732723 55732764 -64012134 + AT_rich Low_complexity Low_complexity 1 41 0 180 304 13 38 chr13 55733849 55733928 -64010970 - MIR SINE MIR 0 262 186 2385 158 42 8 chr13 55733950 55734430 -64010468 - L1MA4 LINE L1 -5 6295 5800 2049 125 28 3 chr13 55734431 55734752 -64010146 - Tigger4(Zombi) DNA MER2_type -877 1854 1526 23 0 0 0 chr13 55734933 55734956 -64009942 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 55735155 55735178 -64009720 + AT_rich Low_complexity Low_complexity 1 23 0 401 315 117 0 chr13 55735696 55735858 -64009040 - MIR SINE MIR -30 232 52 998 130 33 15 chr13 55735860 55736192 -64008706 + MSTA LTR MaLR 1 428 0 301 211 14 14 chr13 55736336 55736407 -64008491 + MER94 DNA DNA 16 86 -48 201 279 148 41 chr13 55736966 55737088 -64007810 - L2 LINE L2 -1 3271 3137 248 308 0 0 chr13 55739749 55739827 -64005071 - MLT1H LTR MaLR -460 89 12 866 323 48 60 chr13 55740288 55740789 -64004109 - L2 LINE L2 -420 2894 2400 255 345 85 14 chr13 55741007 55741230 -64003668 - ERVL LTR ERVL -465 5299 5061 287 304 43 0 chr13 55741550 55741665 -64003233 - ERVL LTR ERVL -1006 4648 4529 393 329 67 36 chr13 55741804 55742029 -64002869 - ERVL LTR ERVL -1315 4339 4108 262 380 72 0 chr13 55742095 55742345 -64002553 - ERVL LTR ERVL -1657 3997 3730 376 355 20 4 chr13 55743052 55743259 -64001639 - ERVL LTR ERVL -2544 3149 2903 967 320 87 55 chr13 55743652 55744617 -64000281 - ERVL LTR ERVL -2985 2779 1742 327 350 70 46 chr13 55748402 55748790 -63996108 + L2 LINE L2 1964 2360 -954 25 20 0 59 chr13 55749830 55749881 -63995017 + AT_rich Low_complexity Low_complexity 1 48 0 382 331 63 63 chr13 55749973 55750335 -63994563 + L1ME LINE L1 1265 1626 -4758 277 233 48 0 chr13 55750596 55750699 -63994199 + L1ME LINE L1 2515 2622 -3760 183 153 0 51 chr13 55750706 55750765 -63994133 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 867 320 58 14 chr13 55750767 55751539 -63993359 + L1ME LINE L1 2753 3558 -2824 259 307 11 0 chr13 55751653 55751741 -63993157 + L1ME LINE L1 3713 3801 -2581 848 267 20 24 chr13 55751836 55752087 -63992811 + MLT2D LTR ERVL 1 250 -164 279 203 0 0 chr13 55752271 55752335 -63992563 + (CA)n Simple_repeat Simple_repeat 2 65 0 304 128 0 0 chr13 55752335 55752382 -63992516 + MLT2D LTR ERVL 350 396 -1 307 318 67 28 chr13 55752468 55752723 -63992175 + L1ME LINE L1 4107 4371 -2011 1507 279 77 2 chr13 55753280 55753682 -63991216 + MER70B LTR ERVL 4 435 -143 1503 155 18 7 chr13 55753983 55754267 -63990631 + L1MB1 LINE L1 5882 6168 0 320 302 54 20 chr13 55754386 55754535 -63990363 + L1MC4 LINE L1 7749 7902 -140 339 25 0 0 chr13 55754536 55754576 -63990322 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr13 55754621 55754644 -63990254 + AT_rich Low_complexity Low_complexity 1 23 0 183 357 14 0 chr13 55754660 55754730 -63990168 - L2 LINE L2 -560 2754 2684 1055 314 121 15 chr13 55754730 55755192 -63989706 + MER69 DNA AcHobo 2 512 -2014 396 179 0 0 chr13 55755330 55755414 -63989484 + MER69 DNA AcHobo 2347 2430 -96 294 279 121 19 chr13 55757899 55758164 -63986734 + L1ME LINE L1 4554 4845 -1537 487 276 60 15 chr13 55758185 55758384 -63986514 + L1ME LINE L1 5636 5843 -563 4475 70 12 6 chr13 55760485 55761507 -63983391 - MER11A LTR ERVK 0 1266 1 21 36 0 0 chr13 55761772 55761800 -63983098 + AT_rich Low_complexity Low_complexity 1 28 0 423 340 92 49 chr13 55762943 55763311 -63981587 + L1MEd LINE L1 4 387 -5732 2277 198 9 0 chr13 55763569 55764013 -63980885 + L1M1 LINE L1 470 917 -6648 586 292 5 10 chr13 55764029 55764224 -63980674 - L1P LINE L1 -1543 4603 4410 630 183 39 10 chr13 55764367 55764513 -63980385 + MSTA LTR MaLR 1 163 -294 414 0 0 0 chr13 55764513 55764559 -63980339 + (TA)n Simple_repeat Simple_repeat 2 47 0 6463 83 20 0 chr13 55764569 55765773 -63979125 - L1PA7 LINE L1 -30 6124 4893 1871 108 0 0 chr13 55765769 55766046 -63978852 + L1PA7 LINE L1 4591 4867 -1279 * 1325 191 29 0 chr13 55766047 55766293 -63978605 + MSTA LTR MaLR 159 411 -17 271 143 48 0 chr13 55766362 55766425 -63978473 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 22 0 0 0 chr13 55766469 55766491 -63978407 + AT_rich Low_complexity Low_complexity 1 22 0 1057 307 52 28 chr13 55767655 55768157 -63976741 - HERV16 LTR ERVL -2909 2087 1574 1429 351 57 32 chr13 55768512 55769538 -63975360 - HERV16 LTR ERVL -3894 1102 52 547 359 45 0 chr13 55769665 55769885 -63975013 - LTR16A LTR ERVL -113 337 108 821 271 54 24 chr13 55770537 55771005 -63973893 + MLT1F LTR MaLR 1 567 0 272 352 76 0 chr13 55771785 55771890 -63973008 + L2 LINE L2 3193 3305 -8 216 0 0 0 chr13 55771895 55771919 -63972979 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 737 282 0 0 chr13 55772279 55772467 -63972431 - AluSg/x SINE Alu -19 293 106 308 200 27 33 chr13 55772690 55772840 -63972058 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 242 209 20 40 chr13 55772864 55773012 -63971886 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 22 99 0 0 chr13 55773032 55773103 -63971795 + AT_rich Low_complexity Low_complexity 1 71 0 1866 105 0 0 chr13 55773493 55773741 -63971157 + AluY SINE Alu 55 302 -9 412 289 52 69 chr13 55773747 55774225 -63970673 + L1ME LINE L1 4610 5079 -1067 8202 217 36 18 chr13 55774386 55774775 -63970123 + L1PA16 LINE L1 2855 3235 -2931 240 35 0 0 chr13 55774775 55774804 -63970094 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8202 217 36 18 chr13 55774804 55777563 -63967335 + L1PA16 LINE L1 3235 6058 -108 418 68 0 68 chr13 55777566 55777639 -63967259 + L1PA16 LINE L1 6097 6164 -2 515 260 37 94 chr13 55777673 55778054 -63966844 - L1MCa LINE L1 -5008 1418 1060 2528 150 50 2 chr13 55778634 55779053 -63965845 - Tigger2 DNA MER2_type 0 2718 2280 351 194 30 0 chr13 55779051 55779118 -63965780 - Tigger2 DNA MER2_type -2649 69 1 * 344 254 124 0 chr13 55779314 55779507 -63965391 + L1M4 LINE L1 3791 4007 -2139 26 50 0 0 chr13 55779532 55779572 -63965326 + AT_rich Low_complexity Low_complexity 1 40 0 809 292 106 22 chr13 55779676 55780166 -63964732 + L1ME LINE L1 5259 5789 -381 320 311 28 11 chr13 55780193 55780370 -63964528 + L1ME3A LINE L1 5675 5854 -316 2113 139 0 0 chr13 55781268 55781571 -63963327 + AluSx SINE Alu 1 303 -9 1382 192 54 61 chr13 55784566 55784957 -63959941 - MLT1B LTR MaLR 0 390 3 530 207 81 19 chr13 55785073 55785090 -63959808 + L1M4 LINE L1 4040 4055 -2091 183 42 0 0 chr13 55785090 55785114 -63959784 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 530 207 81 19 chr13 55785114 55785267 -63959631 + L1M4 LINE L1 4055 4224 -1922 672 196 8 15 chr13 55785327 55785460 -63959438 + MLT1A1 LTR MaLR 1 132 -233 326 301 68 24 chr13 55785464 55785670 -63959228 + L1M4 LINE L1 3949 4163 -1983 634 31 62 21 chr13 55786258 55786354 -63958544 + L1PA13 LINE L1 6058 6157 -6 574 221 159 34 chr13 55786707 55787068 -63957830 - MER61D LTR ERV1 -10 969 202 * 757 292 6 6 chr13 55787044 55787222 -63957676 - LTR28 LTR ERV1 -842 178 1 278 285 53 46 chr13 55787554 55787705 -63957193 + L2 LINE L2 3098 3249 -64 21 0 0 0 chr13 55788841 55788862 -63956036 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 55789359 55789387 -63955511 + AT_rich Low_complexity Low_complexity 1 28 0 1398 146 0 19 chr13 55790160 55790372 -63954526 - AluSx SINE Alu -103 209 2 15859 191 50 11 chr13 55790374 55796769 -63948129 - L1M1 LINE L1 -694 7027 380 2321 238 11 2 chr13 55796771 55797229 -63947669 - L1M1 LINE L1 -5732 1833 1372 * 2471 215 30 39 chr13 55797228 55797990 -63946908 - L1 LINE L1 -2598 3548 2794 1275 287 10 0 chr13 55797995 55798382 -63946516 + L1P LINE L1 2423 2813 -3333 591 283 113 35 chr13 55798389 55798580 -63946318 + L1ME3 LINE L1 5477 5652 -510 342 0 0 0 chr13 55798580 55798618 -63946280 + (TA)n Simple_repeat Simple_repeat 2 39 0 591 283 113 35 chr13 55798618 55798772 -63946126 + L1ME3 LINE L1 5652 5849 -313 367 270 86 11 chr13 55799494 55799668 -63945230 + L1MEc LINE L1 2187 2373 -4023 211 245 75 32 chr13 55800579 55800673 -63944225 + MIR SINE MIR 117 214 -48 24 0 0 0 chr13 55800974 55800998 -63943900 + AT_rich Low_complexity Low_complexity 1 24 0 1677 124 37 33 chr13 55801893 55802166 -63942732 - AluSx SINE Alu -17 295 22 211 205 0 80 chr13 55802797 55802909 -63941989 + (TATAA)n Simple_repeat Simple_repeat 2 104 0 306 254 0 15 chr13 55803526 55803593 -63941305 + LTR67 LTR ERVL 65 130 -427 9848 166 49 10 chr13 55804342 55804845 -63940053 + Tigger1 DNA MER2_type 1 483 -1935 1924 135 96 6 chr13 55804845 55805179 -63939719 + THE1B LTR MaLR 1 364 0 9848 166 49 10 chr13 55805179 55807022 -63937876 + Tigger1 DNA MER2_type 483 2418 0 241 301 98 28 chr13 55807059 55807202 -63937696 + L3 LINE CR1 1349 1501 -76 825 206 69 0 chr13 55808866 55809041 -63935857 + L1PB4 LINE L1 5970 6156 0 280 216 100 0 chr13 55809593 55809687 -63935211 + L1M4 LINE L1 5680 5790 -394 28 48 0 0 chr13 55809846 55809888 -63935010 + AT_rich Low_complexity Low_complexity 1 42 0 375 257 24 38 chr13 55810479 55810689 -63934209 - L1MCa LINE L1 -4492 2449 2243 2417 72 0 3 chr13 55810691 55810996 -63933902 + AluY SINE Alu 1 304 -7 641 283 80 47 chr13 55811271 55811457 -63933441 - L1MCa LINE L1 -4924 1915 1737 2202 108 7 3 chr13 55811457 55811764 -63933134 - AluSx SINE Alu -4 308 1 641 283 80 47 chr13 55811764 55812535 -63932363 - L1MCa LINE L1 -5102 1737 830 587 297 123 18 chr13 55812762 55813153 -63931745 - L1MCa LINE L1 -5968 455 24 354 295 76 62 chr13 55813559 55813783 -63931115 - L1MEd LINE L1 -5046 1073 847 1056 285 24 17 chr13 55813885 55814345 -63930553 + L1MC1 LINE L1 4335 4797 -1349 960 118 0 7 chr13 55814345 55814481 -63930417 + AluSq/x SINE Alu 1 135 -178 1461 135 0 0 chr13 55814481 55814703 -63930195 + AluSg/x SINE Alu 85 306 -4 4983 209 26 23 chr13 55814705 55816246 -63928652 + L1MC1 LINE L1 4786 6328 -5 32 43 0 0 chr13 55816751 55816797 -63928101 + AT_rich Low_complexity Low_complexity 1 46 0 44 46 0 0 chr13 55816916 55816981 -63927917 + AT_rich Low_complexity Low_complexity 1 65 0 1575 291 80 22 chr13 55817242 55817829 -63927069 - MLT1E2 LTR MaLR 0 626 6 226 231 60 51 chr13 55817831 55817948 -63926950 - L1MEd LINE L1 -4937 1182 1065 212 329 58 36 chr13 55818887 55819024 -63925874 + MIR3 SINE MIR 65 204 -4 230 194 43 11 chr13 55819213 55819306 -63925592 + (TA)n Simple_repeat Simple_repeat 1 96 0 1956 140 7 0 chr13 55819647 55819940 -63924958 + AluSg SINE Alu 3 297 -13 2128 129 15 9 chr13 55820200 55820541 -63924357 + LTR3b LTR ERVK 158 500 0 1416 136 0 5 chr13 55820891 55820919 -63923979 + MER41C-int LTR ERV1 7545 7756 0 1437 87 0 0 chr13 55820919 55821104 -63923794 + HERVK14 LTR ERVK 5575 5759 -186 394 145 0 16 chr13 55821104 55821166 -63923732 + MER41C LTR ERV1 1 61 -493 515 48 0 0 chr13 55821166 55821229 -63923669 + HERVK14 LTR ERVK 5822 5884 -61 1971 133 33 15 chr13 55821252 55821584 -63923314 + LTR3b LTR ERVK 159 496 -4 304 98 0 0 chr13 55821585 55821626 -63923272 + LTR3b LTR ERVK 460 500 0 514 204 0 19 chr13 55821661 55821764 -63923134 - MER8 DNA MER2_type 0 239 139 1105 166 112 4 chr13 55821765 55822024 -63922874 - L1P LINE L1 -783 5363 5077 543 287 0 8 chr13 55822024 55822146 -63922752 - MER8 DNA MER2_type -118 121 1 28 29 0 0 chr13 55822192 55822227 -63922671 + AT_rich Low_complexity Low_complexity 1 35 0 2006 135 13 0 chr13 55822923 55823226 -63921672 - AluSp SINE Alu -2 311 5 1807 113 35 18 chr13 55823227 55823509 -63921389 - AluSq SINE Alu -2 311 25 626 202 99 45 chr13 55824114 55824357 -63920541 - LTR37B LTR ERV1 0 468 213 2176 115 3 0 chr13 55824623 55824927 -63919971 + AluSg1 SINE Alu 1 305 -4 205 262 0 0 chr13 55825693 55825735 -63919163 + MIR SINE MIR 28 69 -193 24 53 0 0 chr13 55825921 55825959 -63918939 + AT_rich Low_complexity Low_complexity 1 38 0 1710 142 15 0 chr13 55826008 55826282 -63918616 + AluSx SINE Alu 1 278 -34 705 56 0 0 chr13 55826289 55826379 -63918519 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 205 212 136 0 chr13 55827578 55827644 -63917254 + MIR SINE MIR 156 230 -32 209 299 11 23 chr13 55828309 55828396 -63916502 + CT-rich Low_complexity Low_complexity 2 87 0 21 0 0 0 chr13 55829312 55829333 -63915565 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 55829383 55829406 -63915492 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr13 55829705 55829734 -63915164 + AT_rich Low_complexity Low_complexity 1 29 0 709 343 69 28 chr13 55831135 55832028 -63912870 - HERVL LTR ERVL -802 4714 3738 274 298 88 33 chr13 55832196 55832411 -63912487 + LTR50 LTR ERVL 458 684 -111 21 0 0 0 chr13 55833229 55833250 -63911648 + AT_rich Low_complexity Low_complexity 1 21 0 1023 179 10 10 chr13 55833286 55833481 -63911417 - L1PA15 LINE L1 -6 6810 6616 14706 232 15 19 chr13 55833486 55838324 -63906574 - L1PA15 LINE L1 -532 6285 1468 268 246 0 15 chr13 55838362 55838427 -63906471 - L1PA15 LINE L1 -5325 1462 1399 1985 143 3 0 chr13 55839027 55839321 -63905577 + AluSx SINE Alu 1 295 -17 30 0 0 0 chr13 55839548 55839578 -63905320 + AT_rich Low_complexity Low_complexity 1 30 0 239 231 10 67 chr13 55840553 55840657 -63904241 + L1M4 LINE L1 2935 3032 -3114 588 285 78 0 chr13 55840715 55840957 -63903941 + L1M4 LINE L1 3343 3603 -2543 324 148 0 0 chr13 55841445 55841499 -63903399 - Alu SINE Alu 0 302 249 1873 156 10 3 chr13 55841789 55842091 -63902807 - AluSx SINE Alu -8 304 1 227 217 250 0 chr13 55842804 55842896 -63902002 + MIR SINE MIR 146 260 -2 35 41 0 0 chr13 55844800 55844849 -63900049 + AT_rich Low_complexity Low_complexity 1 49 0 4555 151 64 1 chr13 55845049 55845830 -63899068 - L1PA16 LINE L1 -9 6157 5328 4546 143 45 16 chr13 55845898 55846725 -63898173 + Tigger1 DNA MER2_type 1566 2416 -2 333 0 0 0 chr13 55846727 55846764 -63898134 + (TG)n Simple_repeat Simple_repeat 2 38 0 41 36 0 0 chr13 55846903 55846958 -63897940 + AT_rich Low_complexity Low_complexity 1 55 0 24 67 0 0 chr13 55847880 55847925 -63896973 + AT_rich Low_complexity Low_complexity 1 45 0 282 29 0 0 chr13 55848093 55848128 -63896770 + (TAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 55848526 55848547 -63896351 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr13 55849105 55849132 -63895766 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr13 55849232 55849263 -63895635 + AT_rich Low_complexity Low_complexity 1 31 0 2141 168 27 7 chr13 55849561 55850132 -63894766 - L1M1 LINE L1 -687 5618 5035 27 0 0 0 chr13 55850209 55850236 -63894662 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 55850597 55850618 -63894280 + AT_rich Low_complexity Low_complexity 1 21 0 2304 61 7 3 chr13 55850661 55850954 -63893944 + AluY SINE Alu 1 294 -17 24 32 0 0 chr13 55852076 55852107 -63892791 + AT_rich Low_complexity Low_complexity 1 31 0 365 306 106 17 chr13 55852110 55852290 -63892608 - MIR SINE MIR -2 260 65 23 68 0 0 chr13 55852322 55852366 -63892532 + AT_rich Low_complexity Low_complexity 1 44 0 1410 209 207 51 chr13 55852745 55853338 -63891560 - MER76 LTR ERV 0 688 3 407 218 90 64 chr13 55853356 55853544 -63891354 - MIR SINE MIR 0 262 70 21 36 0 0 chr13 55853613 55853641 -63891257 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr13 55853776 55853803 -63891095 + AT_rich Low_complexity Low_complexity 1 27 0 302 302 39 8 chr13 55853830 55853959 -63890939 + MER110 LTR ERV1 308 440 -51 24 32 0 0 chr13 55855246 55855277 -63889621 + AT_rich Low_complexity Low_complexity 1 31 0 1651 153 68 20 chr13 55855319 55855613 -63889285 + AluSx SINE Alu 3 310 -2 2179 108 0 7 chr13 55856108 55856415 -63888483 - AluSx SINE Alu -7 305 1 22 0 0 0 chr13 55857387 55857409 -63887489 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 55857751 55857775 -63887123 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 55862042 55862066 -63882832 + AT_rich Low_complexity Low_complexity 1 24 0 343 337 58 25 chr13 55862233 55862509 -63882389 + MLT1I LTR MaLR 63 347 -62 29 47 0 0 chr13 55862655 55862698 -63882200 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr13 55863166 55863189 -63881709 + AT_rich Low_complexity Low_complexity 1 23 0 214 321 25 12 chr13 55864673 55864754 -63880144 - MIR SINE MIR -6 256 175 1388 236 44 93 chr13 55866380 55866972 -63877926 + MLT1F1 LTR MaLR 5 567 0 25 31 0 0 chr13 55867463 55867495 -63877403 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr13 55868569 55868594 -63876304 + AT_rich Low_complexity Low_complexity 1 25 0 609 319 89 35 chr13 55868693 55869185 -63875713 - HAL1 LINE L1 -176 2331 1813 850 243 76 62 chr13 55869383 55869831 -63875067 + MLT1C LTR MaLR 5 458 -9 762 339 96 50 chr13 55869845 55870362 -63874536 - HAL1 LINE L1 -914 1593 1101 3725 78 19 13 chr13 55870362 55870889 -63874009 - L1PA13 LINE L1 -8 6155 5626 762 339 96 50 chr13 55870889 55871388 -63873510 - HAL1 LINE L1 -1406 1101 530 27 29 0 0 chr13 55871869 55871903 -63872995 + AT_rich Low_complexity Low_complexity 1 34 0 484 295 57 22 chr13 55872033 55872260 -63872638 - L1MB8 LINE L1 -3 6175 5941 2087 98 3 0 chr13 55872262 55872558 -63872340 + L1PA13 LINE L1 5863 6159 -4 333 314 25 25 chr13 55873470 55873591 -63871307 + L3 LINE CR1 597 717 -860 213 303 92 34 chr13 55874262 55874381 -63870517 + MIR SINE MIR 127 252 -10 1524 305 211 39 chr13 55874559 55876516 -63868382 - L2 LINE L2 -13 3300 994 218 400 0 15 chr13 55876872 55877002 -63867896 - L2 LINE L2 -2997 317 190 27 0 0 0 chr13 55877023 55877050 -63867848 + AT_rich Low_complexity Low_complexity 1 27 0 1122 335 10 5 chr13 55877065 55877462 -63867436 - LTR16A LTR ERVL 0 450 52 26 0 0 0 chr13 55877873 55877899 -63866999 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 55879196 55879218 -63865680 + AT_rich Low_complexity Low_complexity 1 22 0 233 397 71 7 chr13 55879235 55879376 -63865522 + L2 LINE L2 3101 3250 -22 369 0 0 0 chr13 55879473 55879514 -63865384 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr13 55881301 55881322 -63863576 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 55881943 55881967 -63862931 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr13 55882912 55882946 -63861952 + AT_rich Low_complexity Low_complexity 1 34 0 31 44 0 0 chr13 55883548 55883593 -63861305 + AT_rich Low_complexity Low_complexity 1 45 0 206 174 22 0 chr13 55883733 55883779 -63861119 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1015 290 69 36 chr13 55883795 55884261 -63860637 + L1MC3 LINE L1 94 574 -5471 240 246 42 34 chr13 55884249 55884367 -63860531 + L1MC3 LINE L1 2486 2604 -3960 * 4410 276 66 41 chr13 55884385 55885490 -63859408 + L1MC3 LINE L1 2650 3726 -2838 692 199 0 8 chr13 55885490 55885621 -63859277 - FLAM_C SINE Alu -2 131 2 4410 276 66 41 chr13 55885621 55887032 -63857866 + L1MC3 LINE L1 3726 5229 -1335 6942 216 18 6 chr13 55887035 55889743 -63855155 + L1PA16 LINE L1 1 5520 -1329 1474 144 16 23 chr13 55889743 55890000 -63854898 - THE1C LTR MaLR 0 375 121 1255 112 51 10 chr13 55889988 55890185 -63854713 - THE1C LTR MaLR -170 205 1 * 8797 146 60 28 chr13 55890185 55891715 -63853183 - THE1C-int LTR MaLR 0 1580 2 904 151 27 43 chr13 55891716 55891901 -63852997 - THE1C LTR MaLR 0 375 194 1855 149 55 32 chr13 55891905 55892251 -63852647 + THE1B LTR MaLR 1 457 0 945 188 10 56 chr13 55892257 55892454 -63852444 - THE1C LTR MaLR -187 188 1 4191 210 43 8 chr13 55892456 55893752 -63851146 + L1PA16 LINE L1 5518 6860 -9 1360 236 36 55 chr13 55893780 55894738 -63850160 + L1MC3 LINE L1 5220 8186 -17 359 275 44 150 chr13 55894923 55895074 -63849824 + MIR SINE MIR 18 129 -133 1960 145 3 0 chr13 55895074 55895370 -63849528 + AluSp SINE Alu 1 297 -16 359 275 44 150 chr13 55895370 55895491 -63849407 + MIR SINE MIR 129 261 -1 2320 99 3 0 chr13 55897176 55897480 -63847418 + AluSx SINE Alu 1 305 -7 254 176 54 14 chr13 55897528 55897602 -63847296 - MLT1L LTR MaLR -37 578 502 2273 110 0 0 chr13 55898023 55898322 -63846576 - AluSx SINE Alu -13 299 1 1247 295 14 19 chr13 55898347 55898717 -63846181 + MLT1E3 LTR MaLR 257 624 0 253 226 0 0 chr13 55898937 55898999 -63845899 + T-rich Low_complexity Low_complexity 1 62 0 1541 194 3 7 chr13 55899002 55899313 -63845585 + AluJo SINE Alu 1 310 0 29 0 0 0 chr13 55899430 55899459 -63845439 + AT_rich Low_complexity Low_complexity 1 29 0 266 326 37 22 chr13 55901032 55901167 -63843731 + MLT1I LTR MaLR 70 206 -203 243 135 0 0 chr13 55901369 55901406 -63843492 + MLT1I LTR MaLR 371 407 -2 229 286 41 41 chr13 55901786 55901884 -63843014 - L2 LINE L2 0 3313 3216 201 321 155 4 chr13 55902844 55902967 -63841931 + MIR SINE MIR 20 157 -63 2026 147 0 0 chr13 55903332 55903625 -63841273 + AluSx SINE Alu 1 293 -19 216 0 0 0 chr13 55903985 55904009 -63840889 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 272 352 76 0 chr13 55904014 55904119 -63840779 - L2 LINE L2 -8 3305 3193 821 304 68 9 chr13 55904899 55905367 -63839531 - MLT1F LTR MaLR 0 567 1 547 359 45 0 chr13 55906019 55906239 -63838659 + LTR16A LTR ERVL 108 337 -113 1429 351 57 32 chr13 55906366 55907392 -63837506 + HERV16 LTR ERVL 52 1102 -3894 1057 307 52 28 chr13 55907747 55908249 -63836649 + HERV16 LTR ERVL 1574 2087 -2909 22 0 0 0 chr13 55909413 55909435 -63835463 + AT_rich Low_complexity Low_complexity 1 22 0 271 143 48 0 chr13 55909479 55909542 -63835356 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 1325 191 29 0 chr13 55909611 55909857 -63835041 - MSTA LTR MaLR -17 411 159 1871 108 0 0 chr13 55909858 55910135 -63834763 - L1PA7 LINE L1 -1279 4867 4591 * 6514 81 20 0 chr13 55910131 55911335 -63833563 + L1PA7 LINE L1 4893 6124 -30 414 0 0 0 chr13 55911345 55911391 -63833507 + (TA)n Simple_repeat Simple_repeat 2 47 0 769 139 34 19 chr13 55911391 55911537 -63833361 - MSTA LTR MaLR -294 134 1 5517 119 7 29 chr13 55911680 55913468 -63831430 + L1PA15 LINE L1 4410 6164 -1 23 0 0 0 chr13 55913942 55913965 -63830933 + AT_rich Low_complexity Low_complexity 1 23 0 276 379 33 8 chr13 55914308 55914548 -63830350 + L2 LINE L2 2184 2429 -885 210 305 0 67 chr13 55914923 55915028 -63829870 - L2 LINE L2 -9 3304 3207 819 150 8 0 chr13 55915182 55915302 -63829596 - FLAM_C SINE Alu -19 124 4 2200 107 0 0 chr13 55915588 55915888 -63829010 + AluSc SINE Alu 1 300 -9 59 15 0 0 chr13 55916308 55916374 -63828524 + AT_rich Low_complexity Low_complexity 1 66 0 571 278 23 0 chr13 55916555 55916688 -63828210 + LTR16A LTR ERVL 50 185 -265 1069 342 40 27 chr13 55916711 55917261 -63827637 + HERV16 LTR ERVL 917 1473 -3523 234 155 19 117 chr13 55917334 55917437 -63827461 + MER52A LTR ERV1 1 93 -1662 1525 263 44 21 chr13 55917438 55917913 -63826985 + HERV16 LTR ERVL 1724 2209 -2787 218 191 0 16 chr13 55918211 55918274 -63826624 + (TA)n Simple_repeat Simple_repeat 2 63 0 34 72 0 0 chr13 55918299 55918368 -63826530 + AT_rich Low_complexity Low_complexity 1 69 0 2392 178 8 31 chr13 55918419 55918907 -63825991 + L1PA16 LINE L1 5683 6159 -7 1047 214 42 70 chr13 55918939 55919340 -63825558 - MER92B LTR ERV1 -54 582 193 644 338 62 8 chr13 55919850 55920090 -63824808 - MIR SINE MIR -3 259 7 21 0 0 0 chr13 55920498 55920519 -63824379 + AT_rich Low_complexity Low_complexity 1 21 0 845 224 60 104 chr13 55920879 55921263 -63823635 + MLT1A2 LTR MaLR 4 370 -4 202 294 118 0 chr13 55921704 55921789 -63823109 + MIR SINE MIR 64 158 -104 29 0 0 0 chr13 55922118 55922147 -63822751 + AT_rich Low_complexity Low_complexity 1 29 0 259 241 17 0 chr13 55922380 55922438 -63822460 + MER91B DNA MER1_type 14 72 -118 676 262 46 119 chr13 55922460 55922791 -63822107 - L2 LINE L2 -2315 999 706 1889 146 14 3 chr13 55922791 55923085 -63821813 + AluSx SINE Alu 1 297 -15 676 262 46 119 chr13 55923085 55923188 -63821710 - L2 LINE L2 -2608 706 597 335 220 34 11 chr13 55923280 55923401 -63821497 + MLT1D LTR MaLR 47 140 -269 420 323 101 16 chr13 55923489 55923867 -63821031 + L1M4 LINE L1 3932 4341 -1805 296 290 62 28 chr13 55923890 55924035 -63820863 + L1ME2 LINE L1 5989 6138 -26 225 65 0 0 chr13 55924323 55924354 -63820544 + (CA)n Simple_repeat Simple_repeat 1 31 0 629 252 189 25 chr13 55924664 55924982 -63819916 + MLT1D LTR MaLR 109 478 -27 370 372 85 45 chr13 55924985 55925410 -63819488 - L2 LINE L2 -396 2918 2477 21 57 0 0 chr13 55925519 55925554 -63819344 + AT_rich Low_complexity Low_complexity 1 35 0 2168 138 0 0 chr13 55925860 55926172 -63818726 + AluSx SINE Alu 1 312 0 277 145 32 0 chr13 55927032 55927094 -63817804 + GA-rich Low_complexity Low_complexity 3 66 0 1403 283 16 79 chr13 55927177 55927724 -63817174 - LTR40a LTR ERVL 0 519 7 1785 130 68 92 chr13 55928151 55928334 -63816564 - THE1B LTR MaLR -2 362 176 2059 98 31 0 chr13 55928334 55928620 -63816278 - AluY SINE Alu -16 295 1 1785 130 68 92 chr13 55928620 55928652 -63816246 - THE1B LTR MaLR -188 176 145 2162 127 3 0 chr13 55928652 55928959 -63815939 + AluSx SINE Alu 3 310 -2 1785 130 68 92 chr13 55928959 55929112 -63815786 - THE1B LTR MaLR -219 145 2 10935 105 9 7 chr13 55929113 55930322 -63814576 - THE1B-int LTR MaLR 0 1580 365 2777 7 0 0 chr13 55930322 55930627 -63814271 + AluYa5 SINE Alu 1 305 -6 10935 105 9 7 chr13 55930627 55930993 -63813905 - THE1B-int LTR MaLR -1215 365 1 1970 126 73 56 chr13 55930993 55931035 -63813863 - THE1B LTR MaLR 0 364 324 2206 95 16 0 chr13 55931035 55931339 -63813559 + AluSp SINE Alu 1 309 -4 1970 126 73 56 chr13 55931339 55931654 -63813244 - THE1B LTR MaLR -40 324 1 24 32 0 0 chr13 55931655 55931686 -63813212 + AT_rich Low_complexity Low_complexity 1 31 0 248 264 39 45 chr13 55932185 55932340 -63812558 - L1MC4 LINE L1 -197 7845 7692 1394 166 24 3 chr13 55932546 55932841 -63812057 + L1MA9 LINE L1 6012 6312 0 1090 294 81 18 chr13 55932925 55933479 -63811419 - L1ME3A LINE L1 -214 5956 5368 409 320 91 20 chr13 55933493 55933746 -63811152 - L1ME3A LINE L1 -836 5310 5040 350 275 122 18 chr13 55933838 55934060 -63810838 - L1ME3A LINE L1 -1289 4857 4613 333 289 113 16 chr13 55934067 55934160 -63810738 - L1ME3A LINE L1 -1599 4547 4465 252 0 0 0 chr13 55934160 55934188 -63810710 + (TA)n Simple_repeat Simple_repeat 2 29 0 2188 112 3 0 chr13 55934188 55934482 -63810416 - AluSg SINE Alu -15 295 1 333 289 113 16 chr13 55934482 55934581 -63810317 - L1ME3A LINE L1 -1680 4466 4335 28 48 0 0 chr13 55934739 55934781 -63810117 + AT_rich Low_complexity Low_complexity 1 42 0 5014 183 19 11 chr13 55934841 55935895 -63809003 + L1MA7 LINE L1 5196 6255 -36 21 0 0 0 chr13 55936162 55936183 -63808715 + AT_rich Low_complexity Low_complexity 1 21 0 1591 156 18 18 chr13 55936429 55936739 -63808159 - AluSq SINE Alu 0 310 1 1368 102 14 9 chr13 55936774 55936989 -63807909 - L1PA14 LINE L1 0 6161 5946 1785 240 70 26 chr13 55937101 55937684 -63807214 - L1MC3 LINE L1 -8 7777 7169 1451 215 109 25 chr13 55937695 55938179 -63806719 - L1MC3 LINE L1 -699 7086 6562 375 196 59 0 chr13 55938225 55938327 -63806571 - L1M LINE L1 -966 5378 5271 1682 263 44 58 chr13 55938343 55939251 -63805647 - L1M4 LINE L1 -1697 4449 3555 203 351 91 0 chr13 55939460 55939537 -63805361 + L2 LINE L2 3178 3261 -11 329 290 111 0 chr13 55939881 55940043 -63804855 - LTR37B LTR ERV1 -10 458 279 593 221 101 7 chr13 55940046 55940195 -63804703 - LTR40b LTR ERVL -2 460 298 237 262 33 0 chr13 55940257 55940318 -63804580 - MER67D LTR ERV1 -3 511 449 953 231 74 42 chr13 55940451 55940712 -63804186 - MER67D LTR ERV1 -78 436 192 2134 117 0 3 chr13 55940712 55941010 -63803888 + AluSx SINE Alu 2 298 -14 953 231 74 42 chr13 55941010 55941039 -63803859 - MER67D LTR ERV1 -322 192 165 284 317 0 0 chr13 55941040 55941115 -63803783 + G-rich Low_complexity Low_complexity 1 78 -26 3672 96 4 2 chr13 55941115 55941625 -63803273 - MER9 LTR ERVK 0 511 1 284 317 0 0 chr13 55941625 55941653 -63803245 + G-rich Low_complexity Low_complexity 77 104 0 728 206 0 7 chr13 55941654 55941809 -63803089 - MER67D LTR ERV1 -358 156 3 598 221 84 0 chr13 55941864 55942033 -63802865 - LTR40a LTR ERVL -279 183 3 2266 161 87 79 chr13 55942052 55942626 -63802272 + MER4A LTR ERV1 1 584 -80 2056 123 0 0 chr13 55942626 55942941 -63801957 - AluSc SINE Alu 0 317 3 2266 161 87 79 chr13 55942941 55943023 -63801875 + MER4A LTR ERV1 584 664 0 886 199 75 140 chr13 55943489 55944127 -63800771 - MER4A LTR ERV1 -2 697 79 195 42 0 0 chr13 55944127 55944151 -63800747 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 886 199 75 140 chr13 55944151 55944226 -63800672 - MER4A LTR ERV1 -620 79 1 788 271 158 17 chr13 55944375 55944722 -63800176 - MSTD LTR MaLR 0 396 1 582 217 0 8 chr13 55945038 55945158 -63799740 - AluJb SINE Alu -15 297 179 655 154 37 0 chr13 55945626 55945762 -63799136 + L1MA4A LINE L1 6160 6300 -3 1510 192 18 39 chr13 55945905 55946239 -63798659 - LTR47B LTR ERVL 0 443 117 1096 124 36 26 chr13 55946208 55946402 -63798496 - LTR47A LTR ERVL -256 196 1 * 31 44 0 0 chr13 55946595 55946640 -63798258 + AT_rich Low_complexity Low_complexity 1 45 0 551 223 26 104 chr13 55946891 55947084 -63797814 - MER4C LTR ERV1 -12 453 276 722 209 10 94 chr13 55947638 55947839 -63797059 + MER20 DNA MER1_type 36 219 0 9302 187 17 15 chr13 55948946 55950663 -63794235 + L1MA3 LINE L1 9 1728 -5837 334 220 44 11 chr13 55950658 55950749 -63794149 + L1MA3 LINE L1 5589 5682 -1883 * 16213 184 32 12 chr13 55950748 55950818 -63794080 + L1MA2 LINE L1 22 89 -7634 246 32 0 0 chr13 55950818 55950849 -63794049 + (CA)n Simple_repeat Simple_repeat 2 32 0 16213 184 32 12 chr13 55950849 55952684 -63792214 + L1MA2 LINE L1 89 1887 -5836 2250 86 10 0 chr13 55952684 55952975 -63791923 + AluSc SINE Alu 1 294 -15 16213 184 32 12 chr13 55952975 55958344 -63786554 + L1MA2 LINE L1 1887 7718 -5 1650 149 37 12 chr13 55958363 55958691 -63786207 + L1MA3 LINE L1 5676 6011 -1554 448 147 0 0 chr13 55958703 55958778 -63786120 + L1M1 LINE L1 5547 5621 -683 529 136 0 0 chr13 55958778 55958859 -63786039 + L1MA3 LINE L1 5996 6076 -1489 * 6090 161 12 18 chr13 55958834 55960344 -63784554 + L1MA3 LINE L1 5986 7488 -236 2379 79 0 3 chr13 55960344 55960647 -63784251 + AluY SINE Alu 1 302 -9 6090 161 12 18 chr13 55960647 55960882 -63784016 + L1MA3 LINE L1 7488 7723 -1 24 32 0 0 chr13 55962923 55962954 -63781944 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 55963375 55963396 -63781502 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 55963489 55963513 -63781385 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 55965148 55965176 -63779722 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 55965365 55965386 -63779512 + AT_rich Low_complexity Low_complexity 1 21 0 383 273 23 26 chr13 55966624 55966794 -63778104 - L1MD2 LINE L1 -1 7803 6201 2723 117 9 26 chr13 55966826 55967280 -63777618 - L1PA13 LINE L1 0 6163 5718 252 175 53 18 chr13 55967281 55967338 -63777560 - L1MD2 LINE L1 -182 6177 6119 2121 113 3 3 chr13 55967416 55967709 -63777189 - AluSc SINE Alu -12 297 5 1967 149 0 3 chr13 55967722 55968018 -63776880 - AluSg SINE Alu -15 295 1 1309 195 27 37 chr13 55968067 55968395 -63776503 + L1MA8 LINE L1 5964 6288 -3 779 206 56 6 chr13 55969262 55969422 -63775476 - AluJb SINE Alu -15 297 130 250 317 64 32 chr13 55969478 55969759 -63775139 - HAL1b LINE L1 -838 510 221 1749 124 49 114 chr13 55969895 55970152 -63774746 - L1MA5 LINE L1 0 6300 6048 262 62 0 0 chr13 55970152 55970184 -63774714 - U2 snRNA snRNA -155 33 2 1749 124 49 114 chr13 55970184 55970323 -63774575 - L1MA5 LINE L1 -252 6048 5901 261 128 0 0 chr13 55971815 55971862 -63773036 + (TA)n Simple_repeat Simple_repeat 1 47 0 1996 118 0 27 chr13 55971922 55972219 -63772679 + AluSg SINE Alu 1 289 -21 884 321 56 48 chr13 55972876 55973433 -63771465 - MLT2E LTR ERVL -52 576 16 840 315 40 52 chr13 55974118 55974860 -63770038 + L2 LINE L2 2580 3313 0 26 93 0 0 chr13 55974909 55974984 -63769914 + AT_rich Low_complexity Low_complexity 1 75 0 657 245 20 0 chr13 55976101 55976252 -63768646 + L1MC1 LINE L1 6179 6332 -1 21 36 0 0 chr13 55976731 55976759 -63768139 + AT_rich Low_complexity Low_complexity 1 28 0 305 320 115 33 chr13 55977480 55977602 -63767296 + L2 LINE L2 3141 3272 0 26 19 6 0 chr13 55977747 55977812 -63767086 + AT_rich Low_complexity Low_complexity 1 33 0 2386 269 60 98 chr13 55978145 55979659 -63765239 + L1M4 LINE L1 5 1460 -5082 3004 207 31 15 chr13 55979680 55980360 -63764538 + L1MB5 LINE L1 5484 6174 0 2173 88 0 14 chr13 55981693 55981976 -63762922 + AluSg SINE Alu 14 292 -18 355 276 184 12 chr13 55982064 55982227 -63762671 + L2 LINE L2 3123 3313 0 21 0 0 0 chr13 55983904 55983925 -63760973 + AT_rich Low_complexity Low_complexity 1 21 0 481 274 122 42 chr13 55984534 55985033 -63759865 + L1M4 LINE L1 2411 2949 -3876 * 1298 233 16 10 chr13 55985032 55985341 -63759557 - L1M2 LINE L1 -535 5777 5467 405 125 88 0 chr13 55985341 55985421 -63759477 + L1MA8 LINE L1 6050 6136 -155 * 839 176 6 18 chr13 55985420 55985585 -63759313 - L1M2 LINE L1 -677 5491 5329 1523 231 25 39 chr13 55985586 55986076 -63758822 + L1MA9 LINE L1 5785 6267 -45 801 288 89 6 chr13 55986296 55986823 -63758075 + L1M4 LINE L1 3391 3961 -2683 391 216 45 11 chr13 55986830 55986918 -63757980 + MLT-int LTR MaLR 1321 1411 -324 2177 214 108 58 chr13 55986924 55987827 -63757071 - MLT-int LTR MaLR -171 1564 533 957 280 40 13 chr13 55987859 55988231 -63756667 - L1MA9 LINE L1 -38 6274 5893 2568 250 35 45 chr13 55988262 55989733 -63755165 - L1 LINE L1 -3210 3957 2495 786 311 8 12 chr13 55989732 55989983 -63754915 - L1 LINE L1 -5550 1618 1369 * 2139 307 95 33 chr13 55990131 55991430 -63753468 - L1 LINE L1 -5789 1379 1 1754 238 59 30 chr13 55991428 55991957 -63752941 - MLT1A1-int LTR MaLR -1191 544 1 * 254 260 0 52 chr13 55991975 55992052 -63752846 - MLT1A1-int LTR MaLR -1294 77 5 877 235 118 62 chr13 55992056 55992308 -63752590 - MLT1A1 LTR MaLR 0 365 143 1494 180 7 39 chr13 55992308 55992613 -63752285 - AluSx SINE Alu -17 295 1 877 235 118 62 chr13 55992613 55992765 -63752133 - MLT1A1 LTR MaLR -222 143 1 185 420 51 6 chr13 55992795 55992952 -63751946 - L2 LINE L2 -243 3029 2866 195 357 31 10 chr13 55993107 55993205 -63751693 - L2 LINE L2 -601 2713 2614 307 369 8 23 chr13 55993280 55993410 -63751488 - L2 LINE L2 -8 3264 3137 2197 42 4 0 chr13 55994295 55994555 -63750343 - AluY SINE Alu -37 274 14 6320 101 9 7 chr13 55994564 55995477 -63749421 - L1PA10 LINE L1 0 6168 5254 317 171 57 0 chr13 55995474 55995544 -63749354 + L1P LINE L1 3231 3304 -2842 * 2561 38 3 0 chr13 55995537 55995857 -63749041 + L1P LINE L1 4953 5273 -873 997 111 238 16 chr13 55995868 55996057 -63748841 + L1PA7 LINE L1 5923 6153 -1 * 5021 145 10 2 chr13 55996045 55996880 -63748018 + L1P LINE L1 3285 4125 -2021 281 188 0 0 chr13 55997433 55997497 -63747401 - L1MB7 LINE L1 -19 6165 6102 23 78 0 0 chr13 55997627 55997678 -63747220 + AT_rich Low_complexity Low_complexity 1 51 0 33 56 0 0 chr13 55998187 55998241 -63746657 + AT_rich Low_complexity Low_complexity 1 54 0 8622 240 37 31 chr13 55998295 55999542 -63745356 - L1MC3 LINE L1 -33 7752 6514 1795 120 4 0 chr13 55999542 55999801 -63745097 - AluSx SINE Alu -52 260 1 8622 240 37 31 chr13 55999801 56000762 -63744136 - L1MC3 LINE L1 -1271 6514 5514 1923 154 55 0 chr13 56000762 56001106 -63743792 - L1PB3 LINE L1 -1 6153 5791 8622 240 37 31 chr13 56001106 56001955 -63742943 - L1MC3 LINE L1 -2271 5514 4672 1102 264 93 11 chr13 56001925 56002007 -63742891 - L1MC3 LINE L1 -1988 4158 4084 * 9848 149 6 2 chr13 56002007 56004488 -63740410 - L1PA10 LINE L1 -2 6166 3675 1102 264 93 11 chr13 56004488 56004868 -63740030 - L1MC3 LINE L1 -2062 4084 3658 21 57 0 0 chr13 56005685 56005720 -63739178 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr13 56006189 56006222 -63738676 + AT_rich Low_complexity Low_complexity 1 33 0 348 24 0 0 chr13 56006302 56006343 -63738555 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 182 289 33 66 chr13 56007052 56007173 -63737725 - MIR SINE MIR -98 164 48 269 87 0 22 chr13 56009460 56009506 -63735392 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 221 163 20 0 chr13 56009507 56009556 -63735342 + GA-rich Low_complexity Low_complexity 1 50 0 336 225 11 11 chr13 56009599 56009688 -63735210 - L1M LINE L1 -765 5401 5313 21 57 0 0 chr13 56009710 56009745 -63735153 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr13 56009900 56009920 -63734978 + (A)n Simple_repeat Simple_repeat 1 20 0 697 185 0 30 chr13 56009989 56010124 -63734774 - L1M4 LINE L1 -1983 4232 4102 1162 287 67 40 chr13 56010134 56011235 -63733663 - L1MEc LINE L1 -3444 2771 1684 1422 277 93 48 chr13 56011236 56011846 -63733052 - MER76 LTR ERV -30 658 21 1011 267 91 16 chr13 56011862 56012487 -63732411 - L1MEc LINE L1 -4724 1672 1001 342 219 15 80 chr13 56012538 56012620 -63732278 - L1MEc LINE L1 -5502 894 823 2168 78 13 33 chr13 56012620 56012926 -63731972 - AluY SINE Alu -10 301 2 342 219 15 80 chr13 56012926 56012980 -63731918 - L1MEc LINE L1 -5573 823 767 279 161 36 18 chr13 56013018 56013074 -63731824 + MER20 DNA MER1_type 163 219 0 295 290 20 0 chr13 56013075 56013175 -63731723 + L1MEc LINE L1 633 734 -5662 33 66 0 0 chr13 56013296 56013357 -63731541 + AT_rich Low_complexity Low_complexity 1 61 0 534 222 111 18 chr13 56013437 56013662 -63731236 + Charlie7 DNA MER1_type 1591 1836 -776 515 238 138 32 chr13 56013692 56013953 -63730945 + Charlie7 DNA MER1_type 2169 2477 -135 2011 132 0 0 chr13 56013953 56014259 -63730639 - AluSx SINE Alu 0 309 4 515 238 138 32 chr13 56014259 56014337 -63730561 + Charlie7 DNA MER1_type 2477 2545 -67 226 235 0 82 chr13 56014342 56014440 -63730458 - L1MC4 LINE L1 -1339 6703 6614 * 276 250 23 0 chr13 56014364 56014452 -63730446 + L1MC4 LINE L1 6614 6703 -1339 23 0 0 0 chr13 56014678 56014701 -63730197 + AT_rich Low_complexity Low_complexity 1 23 0 346 337 79 20 chr13 56016586 56016788 -63728110 + L2 LINE L2 2034 2247 -1067 783 261 28 19 chr13 56017946 56018157 -63726741 + MER20 DNA MER1_type 6 218 -1 23 33 0 0 chr13 56018872 56018902 -63725996 + AT_rich Low_complexity Low_complexity 1 30 0 218 260 29 48 chr13 56018981 56019085 -63725813 - L2 LINE L2 -90 3223 3122 409 297 68 106 chr13 56019199 56019448 -63725450 - L2 LINE L2 -250 3063 2806 1967 108 9 52 chr13 56019448 56019773 -63725125 + AluSx SINE Alu 1 311 -1 409 297 68 106 chr13 56019773 56020165 -63724733 - L2 LINE L2 -507 2806 2451 2213 75 36 16 chr13 56020790 56021095 -63723803 + AluY SINE Alu 1 311 0 9309 209 14 20 chr13 56021228 56023349 -63721549 - L1P LINE L1 -811 5335 3229 4494 142 9 9 chr13 56023350 56024098 -63720800 + L1PA15 LINE L1 5371 6118 -47 2515 63 0 0 chr13 56024405 56024708 -63720190 - AluY SINE Alu -8 303 1 201 169 34 17 chr13 56025703 56025762 -63719136 + (TTTAA)n Simple_repeat Simple_repeat 5 64 0 212 103 51 0 chr13 56026229 56026268 -63718630 + (CATA)n Simple_repeat Simple_repeat 3 43 0 272 290 59 24 chr13 56026357 56026526 -63718372 - L1M4 LINE L1 -2168 3978 3804 208 324 15 15 chr13 56027193 56027261 -63717637 + L2 LINE L2 3192 3259 -54 2102 115 0 3 chr13 56027959 56028254 -63716644 - AluSq SINE Alu -8 305 12 201 234 21 0 chr13 56028535 56028582 -63716316 + (TCTCTG)n Simple_repeat Simple_repeat 2 49 0 1071 199 0 5 chr13 56028592 56028808 -63716090 - L1PA15 LINE L1 -1 6164 5950 4854 271 42 26 chr13 56028827 56028954 -63715944 - L1PA13 LINE L1 -2763 4034 3911 1918 155 23 3 chr13 56028954 56029257 -63715641 - AluSx SINE Alu -1 311 3 4854 271 42 26 chr13 56029257 56031797 -63713101 - L1PA13 LINE L1 -2886 3911 1323 1959 329 31 42 chr13 56031774 56032618 -63712280 - L1PA13 LINE L1 -5952 835 1 * 965 275 96 33 chr13 56034339 56034768 -63710130 + LTR40a LTR ERVL 15 470 -49 463 233 0 50 chr13 56035709 56035829 -63709069 - L1M4c LINE L1 -6251 133 20 895 124 16 32 chr13 56037240 56037426 -63707472 + L1MA7 LINE L1 6108 6290 -1 2013 143 0 3 chr13 56038648 56038948 -63705950 + AluSx SINE Alu 1 299 -13 228 67 0 0 chr13 56039736 56039766 -63705132 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1795 191 123 5 chr13 56039930 56040313 -63704585 - MSTA LTR MaLR 0 428 1 8517 181 25 5 chr13 56040313 56041931 -63702967 - MSTA-int LTR MaLR 0 1651 1 1898 159 148 3 chr13 56041931 56042303 -63702595 - MSTA LTR MaLR 0 428 3 676 223 103 0 chr13 56042404 56042588 -63702310 - L1MA9 LINE L1 -1 6311 6109 9607 147 36 13 chr13 56042588 56044287 -63700611 - Tigger3(Golem) DNA MER2_type -1 3028 1291 26 93 0 0 chr13 56044509 56044584 -63700314 + AT_rich Low_complexity Low_complexity 1 75 0 840 315 40 52 chr13 56044633 56045375 -63699523 - L2 LINE L2 0 3313 2580 894 321 56 48 chr13 56046060 56046617 -63698281 + MLT2E LTR ERVL 16 576 -52 2014 114 0 27 chr13 56047274 56047571 -63697327 - AluSg SINE Alu -21 289 1 279 122 0 0 chr13 56047631 56047680 -63697218 + (TA)n Simple_repeat Simple_repeat 2 50 0 1749 124 49 114 chr13 56049172 56049311 -63695587 + L1MA5 LINE L1 5901 6048 -252 262 62 0 0 chr13 56049311 56049343 -63695555 + U2 snRNA snRNA 2 33 -155 1749 124 49 114 chr13 56049343 56049600 -63695298 + L1MA5 LINE L1 6048 6300 0 250 317 64 32 chr13 56049736 56050017 -63694881 + HAL1b LINE L1 221 510 -838 779 206 56 6 chr13 56050073 56050233 -63694665 + AluJb SINE Alu 130 297 -15 1309 195 27 37 chr13 56051100 56051428 -63693470 - L1MA8 LINE L1 -3 6288 5964 2002 149 0 0 chr13 56051477 56051772 -63693126 + AluSg SINE Alu 1 295 -15 2095 116 3 3 chr13 56051785 56052078 -63692820 + AluSc SINE Alu 5 297 -12 252 175 53 18 chr13 56052156 56052213 -63692685 + L1MD2 LINE L1 6119 6177 -182 2749 114 9 26 chr13 56052214 56052668 -63692230 + L1PA13 LINE L1 5718 6163 0 383 273 23 26 chr13 56052700 56052870 -63692028 + L1MD2 LINE L1 6201 6358 -1 21 0 0 0 chr13 56054108 56054129 -63690769 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 56054318 56054346 -63690552 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 56055981 56056005 -63688893 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 56056098 56056119 -63688779 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 56056540 56056571 -63688327 + AT_rich Low_complexity Low_complexity 1 31 0 5594 148 16 89 chr13 56058615 56058850 -63686048 - L1MA3 LINE L1 -1 7723 7473 2409 75 0 3 chr13 56058850 56059155 -63685743 - AluY SINE Alu -7 304 1 5594 148 16 89 chr13 56059155 56061136 -63683762 - L1MA3 LINE L1 -251 7473 5676 16172 184 32 12 chr13 56061155 56066524 -63678374 - L1MA2 LINE L1 -5 7718 2456 2250 86 10 0 chr13 56066524 56066815 -63678083 - AluSc SINE Alu -15 294 1 16172 184 32 12 chr13 56066815 56068650 -63676248 - L1MA2 LINE L1 -5267 2456 89 246 32 0 0 chr13 56068650 56068681 -63676217 + (TG)n Simple_repeat Simple_repeat 2 32 0 16172 184 32 12 chr13 56068681 56068751 -63676147 - L1MA2 LINE L1 -7634 89 22 334 220 44 11 chr13 56068750 56068841 -63676057 - L1MA3 LINE L1 -1883 5682 5589 * 9372 186 16 14 chr13 56068836 56070552 -63674346 - L1MA3 LINE L1 -5837 1728 9 722 209 10 94 chr13 56071661 56071862 -63673036 - MER20 DNA MER1_type 0 219 36 551 223 26 104 chr13 56072416 56072609 -63672289 + MER4C LTR ERV1 276 453 -12 31 44 0 0 chr13 56072860 56072905 -63671993 + AT_rich Low_complexity Low_complexity 1 45 0 1096 124 36 26 chr13 56073096 56073290 -63671608 + LTR47A LTR ERVL 1 196 -256 * 1494 195 18 39 chr13 56073259 56073593 -63671305 + LTR47B LTR ERVL 117 443 0 655 154 37 0 chr13 56073736 56073872 -63671026 - L1MA4A LINE L1 -3 6300 6160 582 217 0 8 chr13 56074340 56074460 -63670438 + AluJb SINE Alu 179 297 -15 788 271 158 17 chr13 56074776 56075123 -63669775 + MSTD LTR MaLR 1 396 0 881 199 75 140 chr13 56075272 56075347 -63669551 + MER4A LTR ERV1 1 79 -620 195 42 0 0 chr13 56075347 56075371 -63669527 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 881 199 75 140 chr13 56075371 56076009 -63668889 + MER4A LTR ERV1 79 697 -2 2255 168 80 73 chr13 56076475 56076557 -63668341 - MER4A LTR ERV1 0 664 584 2057 123 0 0 chr13 56076557 56076872 -63668026 + AluSc SINE Alu 3 317 0 2255 168 80 73 chr13 56076872 56077446 -63667452 - MER4A LTR ERV1 -80 584 1 598 221 84 0 chr13 56077465 56077634 -63667264 + LTR40a LTR ERVL 3 183 -279 728 206 0 7 chr13 56077689 56077844 -63667054 + MER67D LTR ERV1 3 156 -358 3642 96 4 4 chr13 56077873 56078384 -63666514 + MER9 LTR ERVK 1 511 0 377 222 0 11 chr13 56078417 56078507 -63666391 - L1M LINE L1 -765 5401 5313 21 57 0 0 chr13 56078529 56078564 -63666334 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr13 56078719 56078739 -63666159 + (A)n Simple_repeat Simple_repeat 1 20 0 697 185 0 30 chr13 56078808 56078943 -63665955 - L1M4 LINE L1 -1983 4232 4102 1162 287 67 40 chr13 56078953 56080054 -63664844 - L1MEc LINE L1 -3444 2771 1684 1422 277 93 48 chr13 56080055 56080665 -63664233 - MER76 LTR ERV -30 658 21 1011 267 91 16 chr13 56080681 56081306 -63663592 - L1MEc LINE L1 -4724 1672 1001 342 219 15 80 chr13 56081357 56081439 -63663459 - L1MEc LINE L1 -5502 894 823 2168 78 13 33 chr13 56081439 56081745 -63663153 - AluY SINE Alu -10 301 2 342 219 15 80 chr13 56081745 56081799 -63663099 - L1MEc LINE L1 -5573 823 767 279 161 36 18 chr13 56081837 56081893 -63663005 + MER20 DNA MER1_type 163 219 0 295 290 20 0 chr13 56081894 56081994 -63662904 + L1MEc LINE L1 633 734 -5662 33 66 0 0 chr13 56082115 56082176 -63662722 + AT_rich Low_complexity Low_complexity 1 61 0 534 222 111 18 chr13 56082256 56082481 -63662417 + Charlie7 DNA MER1_type 1591 1836 -776 515 238 138 32 chr13 56082511 56082772 -63662126 + Charlie7 DNA MER1_type 2169 2477 -135 2011 132 0 0 chr13 56082772 56083078 -63661820 - AluSx SINE Alu 0 309 4 515 238 138 32 chr13 56083078 56083156 -63661742 + Charlie7 DNA MER1_type 2477 2545 -67 226 235 0 82 chr13 56083161 56083259 -63661639 - L1MC4 LINE L1 -1339 6703 6614 * 276 250 23 0 chr13 56083183 56083271 -63661627 + L1MC4 LINE L1 6614 6703 -1339 23 0 0 0 chr13 56083497 56083520 -63661378 + AT_rich Low_complexity Low_complexity 1 23 0 210 296 160 48 chr13 56086314 56086439 -63658459 + L2 LINE L2 3175 3313 0 1450 204 24 31 chr13 56087150 56087532 -63657366 - L1 LINE L1 -2500 3646 3268 23 0 0 0 chr13 56088008 56088031 -63656867 + AT_rich Low_complexity Low_complexity 1 23 0 1267 172 19 4 chr13 56088725 56088986 -63655912 - L1 LINE L1 -840 5306 5042 3103 174 48 0 chr13 56088998 56089608 -63655290 - L1PB4 LINE L1 -2 6154 5516 2080 197 36 2 chr13 56089875 56090287 -63654611 + MSTB LTR MaLR 1 426 0 303 279 99 9 chr13 56090405 56090516 -63654382 - L2 LINE L2 0 3313 3193 2115 112 3 3 chr13 56090804 56091099 -63653799 - AluSg SINE Alu -11 299 5 1978 109 0 27 chr13 56091229 56091523 -63653375 - AluSx SINE Alu -26 286 1 23 0 0 0 chr13 56091633 56091656 -63653242 + AT_rich Low_complexity Low_complexity 1 23 0 327 49 0 0 chr13 56093179 56093220 -63651678 + (CA)n Simple_repeat Simple_repeat 2 42 0 801 288 62 60 chr13 56093751 56094185 -63650713 + L1MC4 LINE L1 6496 6930 -1112 324 83 0 0 chr13 56094223 56094271 -63650627 + (TG)n Simple_repeat Simple_repeat 1 48 0 596 132 0 0 chr13 56094316 56094422 -63650476 - LOR1-int LTR ERV1 -3846 4274 4169 1463 205 10 106 chr13 56094422 56094767 -63650131 + L1 LINE L1 3994 4278 -1868 3260 89 13 4 chr13 56094767 56095228 -63649670 - L1PA11 LINE L1 0 6174 5710 1463 205 10 106 chr13 56095228 56095380 -63649518 + L1 LINE L1 4278 4443 -1703 1579 194 25 16 chr13 56095384 56095703 -63649195 - MSTB LTR MaLR -103 323 2 1630 156 52 3 chr13 56095703 56096049 -63648849 + L1MA8 LINE L1 5923 6285 -6 28 29 0 0 chr13 56096049 56096084 -63648814 + AT_rich Low_complexity Low_complexity 1 35 0 4734 157 19 47 chr13 56096154 56096284 -63648614 + L1PA16 LINE L1 5059 5191 -975 387 0 0 0 chr13 56096284 56096327 -63648571 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4734 157 19 47 chr13 56096327 56096576 -63648322 + L1PA16 LINE L1 5191 5446 -720 1954 88 11 0 chr13 56096576 56096836 -63648062 + AluSq SINE Alu 44 306 -7 4734 157 19 47 chr13 56096836 56097599 -63647299 + L1PA16 LINE L1 5446 6166 0 504 320 68 31 chr13 56097747 56098203 -63646695 + L1ME3A LINE L1 4927 5399 -747 249 229 14 43 chr13 56098308 56098378 -63646520 + L1ME3A LINE L1 5461 5528 -638 24 77 0 0 chr13 56098386 56098438 -63646460 + AT_rich Low_complexity Low_complexity 1 52 0 789 271 89 30 chr13 56098508 56098947 -63645951 + L1ME3A LINE L1 5602 6066 -104 23 86 0 0 chr13 56099319 56099377 -63645521 + AT_rich Low_complexity Low_complexity 1 58 0 233 200 31 31 chr13 56099641 56099706 -63645192 + MER92B LTR ERV1 254 318 -318 231 36 0 0 chr13 56100489 56100517 -63644381 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 186 118 0 0 chr13 56100609 56100643 -63644255 + (TA)n Simple_repeat Simple_repeat 2 35 0 1791 127 0 0 chr13 56100643 56100902 -63643996 - AluSq SINE Alu -18 295 37 21 0 0 0 chr13 56101169 56101190 -63643708 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr13 56101325 56101352 -63643546 + AT_rich Low_complexity Low_complexity 1 27 0 1070 309 28 40 chr13 56101815 56102317 -63642581 + L1ME1 LINE L1 5649 6144 -22 404 256 36 54 chr13 56102368 56102536 -63642362 + L1MC4 LINE L1 6922 7086 -956 1507 255 82 18 chr13 56102550 56103150 -63641748 + L1MC4 LINE L1 7259 7896 -146 265 242 96 51 chr13 56103212 56103390 -63641508 + HsTC2 DNA Tc2 1710 1895 -3 23 33 0 0 chr13 56105285 56105315 -63639583 + AT_rich Low_complexity Low_complexity 1 30 0 353 318 159 0 chr13 56106132 56106258 -63638640 - L2 LINE L2 -6 3266 3121 745 262 43 0 chr13 56107680 56107867 -63637031 + MER58A DNA MER1_type 30 224 0 32 67 0 0 chr13 56107968 56108028 -63636870 + AT_rich Low_complexity Low_complexity 1 60 0 1611 201 61 18 chr13 56108222 56108614 -63636284 + L1MA8 LINE L1 5877 6285 -6 233 132 75 0 chr13 56108645 56108698 -63636200 + Charlie5 DNA MER1_type 2425 2481 -131 268 374 38 0 chr13 56108822 56108953 -63635945 + L2 LINE L2 2948 3083 -189 31 42 0 42 chr13 56109155 56109226 -63635672 + AT_rich Low_complexity Low_complexity 1 68 0 211 339 54 9 chr13 56109636 56109748 -63635150 + L2 LINE L2 3196 3312 -1 2075 138 132 5 chr13 56109892 56110270 -63634628 + MSTA LTR MaLR 1 426 -2 7877 156 64 14 chr13 56110274 56111777 -63633121 + MSTA-int LTR MaLR 3 1580 0 623 178 9 0 chr13 56111777 56111884 -63633014 + MSTA LTR MaLR 1 108 -320 1865 179 15 3 chr13 56111998 56112328 -63632570 - L1PA15 LINE L1 -31 6134 5801 354 242 0 0 chr13 56112328 56112394 -63632504 - Tigger3(Golem) DNA MER2_type -2963 66 1 695 172 67 28 chr13 56112394 56112574 -63632324 - L1MA9 LINE L1 -201 6111 5925 1810 184 47 35 chr13 56112576 56113121 -63631777 + MLT2A2 LTR ERVL 3 554 0 1034 193 4 34 chr13 56113121 56113360 -63631538 - L1MA9 LINE L1 -383 5929 5698 369 193 5 13 chr13 56113360 56113433 -63631465 + LTR9 LTR ERV1 554 612 0 232 333 38 8 chr13 56113435 56113567 -63631331 - L1ME LINE L1 -611 5553 5418 22 0 0 0 chr13 56113966 56113988 -63630910 + AT_rich Low_complexity Low_complexity 1 22 0 2092 117 3 10 chr13 56114799 56115099 -63629799 + AluSp SINE Alu 1 298 -15 21 0 0 0 chr13 56115397 56115418 -63629480 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 56115698 56115726 -63629172 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 56116357 56116380 -63628518 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 56116602 56116626 -63628272 + AT_rich Low_complexity Low_complexity 1 24 0 1821 201 64 48 chr13 56117784 56118203 -63626695 - MSTB LTR MaLR 0 426 1 23 68 0 0 chr13 56119345 56119389 -63625509 + AT_rich Low_complexity Low_complexity 1 44 0 190 408 115 27 chr13 56119601 56119861 -63625037 + L2 LINE L2 2987 3269 -3 22 35 0 0 chr13 56119933 56119962 -63624936 + AT_rich Low_complexity Low_complexity 1 29 0 529 179 9 9 chr13 56120308 56120420 -63624478 - L1MA10 LINE L1 -2 6332 6221 505 146 12 0 chr13 56120697 56120779 -63624119 + THE1B LTR MaLR 1 83 -345 765 138 17 0 chr13 56120781 56120897 -63624001 + THE1B LTR MaLR 247 364 0 1335 150 0 0 chr13 56120897 56121117 -63623781 + MSTA-int LTR MaLR 1 220 -1360 5624 171 11 13 chr13 56121158 56122141 -63622757 + MSTA-int LTR MaLR 600 1580 0 1807 151 121 48 chr13 56122141 56122514 -63622384 + MSTA LTR MaLR 1 345 -83 1713 149 92 49 chr13 56122514 56122863 -63622035 - THE1B LTR MaLR 0 364 1 10604 113 20 8 chr13 56122863 56124424 -63620474 - THE1B-int LTR MaLR 0 1580 1 1966 134 77 37 chr13 56124424 56124774 -63620124 - THE1B LTR MaLR 0 364 1 1807 151 121 48 chr13 56124774 56124795 -63620103 + MSTA LTR MaLR 344 426 -2 1229 233 96 28 chr13 56124801 56125181 -63619717 + MLT2B1 LTR ERVL 41 442 -78 24 0 0 0 chr13 56125199 56125223 -63619675 + AT_rich Low_complexity Low_complexity 1 24 0 40 79 0 0 chr13 56125270 56125359 -63619539 + AT_rich Low_complexity Low_complexity 1 89 0 21 0 0 0 chr13 56126260 56126281 -63618617 + AT_rich Low_complexity Low_complexity 1 21 0 234 91 0 0 chr13 56126398 56126431 -63618467 + (TA)n Simple_repeat Simple_repeat 1 33 0 2104 152 43 0 chr13 56126998 56127347 -63617551 + THE1B LTR MaLR 1 364 0 26 82 0 0 chr13 56130809 56130870 -63614028 + AT_rich Low_complexity Low_complexity 1 61 0 231 170 0 0 chr13 56131190 56131237 -63613661 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr13 56131304 56131332 -63613566 + AT_rich Low_complexity Low_complexity 1 28 0 243 61 0 0 chr13 56132161 56132194 -63612704 + (TG)n Simple_repeat Simple_repeat 2 34 0 2255 171 130 19 chr13 56132253 56132784 -63612114 - LTR10E LTR ERV1 -43 590 1 27 49 0 0 chr13 56132946 56132987 -63611911 + AT_rich Low_complexity Low_complexity 1 41 0 1187 294 43 31 chr13 56133722 56134209 -63610689 + L1MD2 LINE L1 5508 6000 -359 2285 101 30 3 chr13 56134390 56134727 -63610171 - L1PA13 LINE L1 -11 6152 5807 3514 130 15 4 chr13 56134727 56135351 -63609547 + L1PA13 LINE L1 5176 5804 -364 1396 236 81 58 chr13 56135653 56136149 -63608749 - MER67D LTR ERV1 -1 513 7 261 0 0 0 chr13 56136920 56136949 -63607949 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2293 84 3 0 chr13 56137513 56137810 -63607088 - AluSp SINE Alu -15 298 1 1539 144 39 122 chr13 56137834 56138243 -63606655 + THE1C LTR MaLR 1 375 0 190 408 115 27 chr13 56138912 56139172 -63605726 + L2 LINE L2 2987 3269 -3 22 35 0 0 chr13 56139244 56139273 -63605625 + AT_rich Low_complexity Low_complexity 1 29 0 1685 220 46 23 chr13 56139619 56140051 -63604847 - L1MA10 LINE L1 -2 6332 5891 447 183 58 8 chr13 56141222 56141342 -63603556 - THE1C LTR MaLR -1 374 249 23 33 0 0 chr13 56141477 56141507 -63603391 + AT_rich Low_complexity Low_complexity 1 30 0 594 286 91 5 chr13 56141785 56142005 -63602893 - MIR SINE MIR -5 257 19 31 26 0 0 chr13 56142101 56142139 -63602759 + AT_rich Low_complexity Low_complexity 1 38 0 25 75 0 0 chr13 56144192 56144245 -63600653 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr13 56144989 56145018 -63599880 + AT_rich Low_complexity Low_complexity 1 29 0 268 255 191 11 chr13 56145662 56145756 -63599142 + MIR SINE MIR 126 236 -26 234 188 0 0 chr13 56146630 56146678 -63598220 + (TA)n Simple_repeat Simple_repeat 2 49 0 327 179 0 0 chr13 56146755 56146822 -63598076 + (TG)n Simple_repeat Simple_repeat 2 68 0 23 33 0 0 chr13 56146822 56146852 -63598046 + AT_rich Low_complexity Low_complexity 1 30 0 431 67 84 0 chr13 56146896 56147015 -63597883 + (TA)n Simple_repeat Simple_repeat 2 130 0 204 350 75 0 chr13 56147051 56147131 -63597767 + MIR SINE MIR 72 157 -105 206 222 22 0 chr13 56147131 56147176 -63597722 + GA-rich Low_complexity Low_complexity 3 48 0 22 35 0 0 chr13 56147181 56147210 -63597688 + AT_rich Low_complexity Low_complexity 1 29 0 279 0 0 0 chr13 56148110 56148141 -63596757 + (TG)n Simple_repeat Simple_repeat 2 32 0 28 91 0 0 chr13 56148204 56148281 -63596617 + AT_rich Low_complexity Low_complexity 1 77 0 188 369 71 24 chr13 56148293 56148461 -63596437 - L2 LINE L2 -1279 2035 1860 2034 107 0 0 chr13 56148829 56149110 -63595788 - AluSc SINE Alu -7 302 22 258 353 65 48 chr13 56149729 56149914 -63594984 - L2 LINE L2 -2568 746 553 2883 81 59 7 chr13 56149914 56149952 -63594946 - MLT2A1 LTR ERVL 0 444 409 592 13 26 0 chr13 56149952 56150029 -63594869 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 2883 81 59 7 chr13 56150029 56150412 -63594486 - MLT2A1 LTR ERVL -35 409 1 258 353 65 48 chr13 56150412 56150518 -63594380 - L2 LINE L2 -2761 553 450 679 194 29 0 chr13 56150599 56150738 -63594160 + BC200 scRNA scRNA 1 143 -57 349 244 39 85 chr13 56151247 56151505 -63593393 + L1M4 LINE L1 3708 3953 -2193 1887 145 37 0 chr13 56151562 56151859 -63593039 + AluSx SINE Alu 1 308 -4 313 290 20 0 chr13 56152246 56152346 -63592552 + U13 snRNA snRNA 1 102 -2 869 186 6 6 chr13 56152382 56152543 -63592355 + MSTC LTR MaLR 267 427 -1 310 247 12 0 chr13 56153439 56153524 -63591374 - L1MC5 LINE L1 -561 7400 7315 349 272 6 12 chr13 56153524 56153697 -63591201 + (TA)n Simple_repeat Simple_repeat 2 173 0 685 245 88 110 chr13 56153709 56154400 -63590498 - L1MC5 LINE L1 -659 7302 6627 2178 52 73 3 chr13 56154456 56154742 -63590156 + AluY SINE Alu 1 306 -5 30 0 0 0 chr13 56154906 56154936 -63589962 + AT_rich Low_complexity Low_complexity 1 30 0 356 282 115 48 chr13 56155419 56155671 -63589227 - L1ME4a LINE L1 -138 5983 5715 22 35 0 0 chr13 56155688 56155717 -63589181 + AT_rich Low_complexity Low_complexity 1 29 0 414 0 0 0 chr13 56156048 56156094 -63588804 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1249 226 160 6 chr13 56156251 56156570 -63588328 - MLT1F1 LTR MaLR -2 565 198 282 238 0 0 chr13 56156646 56156709 -63588189 - MLT1F1 LTR MaLR -504 63 1 250 337 39 62 chr13 56156728 56156906 -63587992 + MIR SINE MIR 8 181 -81 355 270 10 10 chr13 56157770 56157870 -63587028 - L1ME4a LINE L1 -2675 5367 5268 813 261 51 9 chr13 56157876 56158091 -63586807 + MER58A DNA MER1_type 1 224 0 1131 258 132 18 chr13 56158092 56158647 -63586251 - L1ME4a LINE L1 -881 5265 4648 22 0 0 0 chr13 56158682 56158704 -63586194 + AT_rich Low_complexity Low_complexity 1 22 0 957 83 23 0 chr13 56158713 56158845 -63586053 + AluSc SINE Alu 166 300 -9 418 191 143 27 chr13 56158852 56158999 -63585899 - L1MD3 LINE L1 -53 7942 7779 204 308 70 51 chr13 56159026 56159182 -63585716 - L2 LINE L2 0 3313 3155 22 35 0 0 chr13 56159502 56159531 -63585367 + AT_rich Low_complexity Low_complexity 1 29 0 506 309 58 61 chr13 56160690 56161036 -63583862 - MLT1J LTR MaLR -36 475 131 2189 113 3 0 chr13 56161907 56162208 -63582690 + AluSq SINE Alu 1 302 -11 351 0 0 0 chr13 56162480 56162519 -63582379 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1532 189 26 3 chr13 56162567 56162912 -63581986 + MSTB2 LTR MaLR 15 457 0 306 320 108 29 chr13 56163036 56163342 -63581556 + HAL1 LINE L1 1100 1429 -1078 369 335 49 31 chr13 56163504 56163853 -63581045 + HAL1 LINE L1 1572 1926 -581 1080 283 70 34 chr13 56163887 56164388 -63580510 - L1ME3A LINE L1 -69 6084 5566 192 40 0 0 chr13 56164410 56164435 -63580463 + (TG)n Simple_repeat Simple_repeat 2 26 0 251 242 0 0 chr13 56164435 56164497 -63580401 - L1ME3A LINE L1 -686 5459 5398 231 232 98 12 chr13 56164738 56164820 -63580078 - L1ME3A LINE L1 -1981 4148 4060 382 340 79 59 chr13 56165417 56165686 -63579212 - L1ME3A LINE L1 -4905 1214 952 1761 181 121 5 chr13 56165686 56166073 -63578825 + MSTB1 LTR MaLR 1 432 0 382 340 79 59 chr13 56166073 56166409 -63578489 - L1ME3A LINE L1 -5167 952 597 1075 194 10 1 chr13 56166967 56167353 -63577545 - MER65A LTR ERV1 0 445 1 1111 216 32 65 chr13 56167368 56167678 -63577220 - MLT1A1 LTR MaLR -65 300 1 15909 32 12 1 chr13 56168147 56170827 -63574071 + L1PA3 LINE L1 3460 6152 -3 22 80 0 0 chr13 56170827 56170877 -63574021 + AT_rich Low_complexity Low_complexity 1 50 0 1874 166 0 3 chr13 56171134 56171435 -63573463 + AluSx SINE Alu 1 300 -12 266 139 0 0 chr13 56171927 56171970 -63572928 + MADE1 DNA Mariner 1 43 -37 1397 219 53 3 chr13 56172418 56172737 -63572161 - MER54A LTR ERVL 0 901 567 1647 242 47 91 chr13 56172745 56173381 -63571517 + MER76 LTR ERV 22 629 -59 248 213 0 0 chr13 56173388 56173435 -63571463 - MER76 LTR ERV -21 667 621 265 288 106 47 chr13 56173580 56173750 -63571148 + L2 LINE L2 3134 3313 0 25 51 0 0 chr13 56174213 56174252 -63570646 + AT_rich Low_complexity Low_complexity 1 39 0 369 58 0 0 chr13 56174331 56174383 -63570515 + (TG)n Simple_repeat Simple_repeat 2 53 0 24 77 0 0 chr13 56175474 56175526 -63569372 + AT_rich Low_complexity Low_complexity 1 52 0 1314 281 36 13 chr13 56175573 56176040 -63568858 - L1ME1 LINE L1 -44 6122 5645 252 255 66 32 chr13 56176046 56176202 -63568696 - L1ME LINE L1 -3832 2272 2106 641 321 111 33 chr13 56176362 56176937 -63567961 - L1ME LINE L1 -4669 1411 882 2326 81 7 3 chr13 56176937 56177247 -63567651 - AluY SINE Alu 0 311 1 641 321 111 33 chr13 56177247 56178009 -63566889 - L1ME LINE L1 -5198 882 1 2127 142 14 22 chr13 56178049 56178416 -63566482 - THE1B LTR MaLR 0 364 1 237 369 33 8 chr13 56179146 56179268 -63565630 - MIR SINE MIR -86 176 52 540 359 81 13 chr13 56179361 56179745 -63565153 + L2 LINE L2 2531 2940 -374 829 332 58 40 chr13 56180053 56180860 -63564038 - L2 LINE L2 -14 3299 2480 24 77 0 0 chr13 56181851 56181903 -63562995 + AT_rich Low_complexity Low_complexity 1 52 0 1769 118 4 11 chr13 56181913 56182175 -63562723 - AluY SINE Alu -11 300 41 484 286 8 0 chr13 56182182 56182308 -63562590 - AluJb SINE Alu -16 296 170 2172 131 0 0 chr13 56182322 56182627 -63562271 + AluSc SINE Alu 1 305 -4 516 72 0 0 chr13 56182649 56182718 -63562180 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 188 338 15 0 chr13 56182850 56182918 -63561980 - L2 LINE L2 -212 3060 2992 29 0 0 0 chr13 56183155 56183184 -63561714 + AT_rich Low_complexity Low_complexity 1 29 0 801 235 142 4 chr13 56183607 56183875 -63561023 + MER21B LTR ERV1 509 813 -50 3624 240 9 1 chr13 56183902 56184645 -63560253 + MER21B-int LTR ERV1 1 749 -3442 1960 163 20 20 chr13 56184656 56185013 -63559885 - L1MA5 LINE L1 -378 5922 5566 * 6964 234 58 26 chr13 56185008 56185582 -63559316 - L1 LINE L1 -1052 5796 5242 333 68 0 0 chr13 56185582 56185626 -63559272 + (TG)n Simple_repeat Simple_repeat 1 44 0 6964 234 58 26 chr13 56185626 56189424 -63555474 - L1 LINE L1 -1606 5242 1197 258 242 0 16 chr13 56189427 56189489 -63555409 + MER21B-int LTR ERV1 1560 1620 -2571 413 320 0 0 chr13 56189815 56189915 -63554983 + MLT1G1 LTR MaLR 21 120 -475 2248 105 7 0 chr13 56190212 56190516 -63554382 + AluY SINE Alu 1 306 -5 417 344 118 15 chr13 56190523 56190959 -63553939 - L1MC4 LINE L1 -864 7029 6448 969 104 0 7 chr13 56190985 56191129 -63553769 + L1PA8 LINE L1 6028 6170 -2 207 0 0 0 chr13 56191691 56191714 -63553184 + (T)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr13 56192067 56192090 -63552808 + AT_rich Low_complexity Low_complexity 1 23 0 340 319 35 21 chr13 56192180 56192321 -63552577 - L1M4 LINE L1 -4834 1708 1566 347 260 88 21 chr13 56192371 56192546 -63552352 + L1ME LINE L1 52 235 -5835 2082 204 41 5 chr13 56192895 56193336 -63551562 + LTR32 LTR ERVL 15 471 0 349 276 80 51 chr13 56193337 56193648 -63551250 + L1ME LINE L1 562 881 -5189 24 0 0 0 chr13 56193880 56193904 -63550994 + AT_rich Low_complexity Low_complexity 1 24 0 40 53 0 32 chr13 56194783 56194877 -63550021 + AT_rich Low_complexity Low_complexity 1 91 0 23 78 0 0 chr13 56196041 56196092 -63548806 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr13 56196509 56196542 -63548356 + AT_rich Low_complexity Low_complexity 1 33 0 588 297 39 68 chr13 56197536 56198056 -63546842 - MLT1F1 LTR MaLR 0 567 55 27 29 0 0 chr13 56198083 56198117 -63546781 + AT_rich Low_complexity Low_complexity 1 34 0 474 277 33 37 chr13 56198268 56198568 -63546330 + L1MC/D LINE L1 4767 5065 -1081 839 248 31 0 chr13 56198649 56198875 -63546023 + L1MC/D LINE L1 5569 5801 -2194 30 0 0 0 chr13 56200358 56200388 -63544510 + AT_rich Low_complexity Low_complexity 1 30 0 5645 139 70 100 chr13 56200512 56202808 -63542090 - L1PA13 LINE L1 -20 6143 3926 570 162 17 8 chr13 56202874 56202991 -63541907 - L1MA9 LINE L1 -6 6306 6189 24 53 0 0 chr13 56203111 56203149 -63541749 + AT_rich Low_complexity Low_complexity 1 38 0 7812 17 0 5 chr13 56203812 56205208 -63539690 - L1PA2 LINE L1 -1 6154 4762 28 29 0 0 chr13 56206405 56206440 -63538458 + AT_rich Low_complexity Low_complexity 1 35 0 2004 137 0 27 chr13 56207487 56207786 -63537112 - AluSx SINE Alu -21 291 1 267 320 20 26 chr13 56208079 56208232 -63536666 - L1MC/D LINE L1 -2069 5739 5588 344 330 103 39 chr13 56208650 56208980 -63535918 + MLT1H LTR MaLR 85 435 -114 2345 83 3 0 chr13 56209103 56209403 -63535495 + AluY SINE Alu 1 301 -10 25 0 0 0 chr13 56209444 56209469 -63535429 + AT_rich Low_complexity Low_complexity 1 25 0 25 83 0 0 chr13 56209529 56209589 -63535309 + AT_rich Low_complexity Low_complexity 1 60 0 26 30 0 0 chr13 56209672 56209705 -63535193 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr13 56210536 56210564 -63534334 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 56210710 56210732 -63534166 + AT_rich Low_complexity Low_complexity 1 22 0 1991 136 10 0 chr13 56211410 56211711 -63533187 + AluSx SINE Alu 1 304 -8 183 80 0 0 chr13 56212582 56212607 -63532291 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 222 333 159 26 chr13 56212660 56212855 -63532043 - MIR SINE MIR -3 259 39 243 0 0 0 chr13 56213766 56213793 -63531105 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 78 0 0 chr13 56213829 56213880 -63531018 + AT_rich Low_complexity Low_complexity 1 51 0 9453 219 119 31 chr13 56214600 56214770 -63530128 + L1MA4A LINE L1 106 260 -6589 2225 79 0 0 chr13 56214770 56215070 -63529828 + AluSc SINE Alu 1 300 0 9453 219 119 31 chr13 56215070 56217383 -63527515 + L1MA4A LINE L1 260 2809 -4040 10963 229 19 13 chr13 56217393 56220299 -63524599 + L1MA4A LINE L1 2954 5878 -970 3714 215 37 34 chr13 56220288 56221310 -63523588 + L1P LINE L1 3062 4086 -2060 * 16380 115 9 14 chr13 56221316 56223821 -63521077 + L1PA6 LINE L1 11 2502 -3644 45 55 0 0 chr13 56223844 56223917 -63520981 + AT_rich Low_complexity Low_complexity 1 73 0 21455 62 0 2 chr13 56223917 56227542 -63517356 + L1PA6 LINE L1 2527 6154 0 1937 234 86 2 chr13 56227542 56228042 -63516856 + L1P LINE L1 4068 4609 -1537 754 220 6 6 chr13 56228042 56228210 -63516688 + L1PA15 LINE L1 5998 6165 0 25 0 0 0 chr13 56228212 56228237 -63516661 + AT_rich Low_complexity Low_complexity 1 25 0 4845 155 94 6 chr13 56228237 56229304 -63515594 + L1MA4A LINE L1 5854 6998 -7 228 200 0 0 chr13 56229549 56229599 -63515299 + (TG)n Simple_repeat Simple_repeat 1 50 0 7470 28 5 1 chr13 56230130 56231728 -63513170 - L1PA3 LINE L1 -3 6152 4559 4473 21 0 0 chr13 56231728 56232251 -63512647 + L1PA3 LINE L1 4014 4536 -1610 4988 229 30 8 chr13 56232557 56233671 -63511227 + L1M1 LINE L1 10 1147 -6418 6340 138 22 20 chr13 56233675 56235269 -63509629 + L1MA1 LINE L1 4706 6300 -2 1819 193 71 53 chr13 56235295 56235746 -63509152 + L1MD2 LINE L1 5444 5902 -457 26 30 0 0 chr13 56235944 56235977 -63508921 + AT_rich Low_complexity Low_complexity 1 33 0 264 328 135 13 chr13 56236124 56236353 -63508545 + L2 LINE L2 3054 3310 -3 363 303 97 26 chr13 56236367 56236562 -63508336 - L3 LINE CR1 -297 1280 1072 2189 102 10 0 chr13 56238878 56239181 -63505717 + AluSp SINE Alu 1 306 -7 22 35 0 0 chr13 56239326 56239355 -63505543 + AT_rich Low_complexity Low_complexity 1 29 0 200 308 215 0 chr13 56239394 56239459 -63505439 + L2 LINE L2 3169 3247 -25 * 222 200 0 0 chr13 56239425 56239460 -63505438 + MIR SINE MIR 210 244 -18 840 265 65 18 chr13 56239463 56239799 -63505099 - L1MD3 LINE L1 -1 7994 7643 498 328 17 0 chr13 56239807 56239984 -63504914 - L1MD3 LINE L1 -412 7583 7404 357 253 0 21 chr13 56239985 56240080 -63504818 - MLT1F1 LTR MaLR -443 124 32 696 263 19 5 chr13 56240088 56240297 -63504601 - L1MD3 LINE L1 -696 7299 7088 1037 292 59 29 chr13 56240332 56241053 -63503845 - L1MC4a LINE L1 -1181 6627 5833 1846 150 142 18 chr13 56241053 56241434 -63503464 + MSTA LTR MaLR 1 428 0 1037 292 59 29 chr13 56241434 56241796 -63503102 - L1MC4a LINE L1 -1975 5833 5483 10905 239 22 23 chr13 56241841 56245305 -63499593 + L1P4 LINE L1 2087 5542 -624 204 356 55 0 chr13 56245540 56245613 -63499285 - L2 LINE L2 -9 3304 3228 2159 95 0 26 chr13 56246260 56246566 -63498332 - AluSq SINE Alu -13 300 3 274 281 56 12 chr13 56246617 56246777 -63498121 - L1MC4a LINE L1 -1538 4608 4442 26 30 0 0 chr13 56246822 56246855 -63498043 + AT_rich Low_complexity Low_complexity 1 33 0 631 273 57 120 chr13 56247045 56247605 -63497293 - L1MC4a LINE L1 -1970 4176 3652 4134 181 29 19 chr13 56247712 56248022 -63496876 - L1MC1 LINE L1 -56 6277 5971 2271 108 0 0 chr13 56248022 56248327 -63496571 - AluY SINE Alu -4 307 3 4134 181 29 19 chr13 56248327 56248852 -63496046 - L1MC1 LINE L1 -362 5971 5434 26 82 0 0 chr13 56249133 56249194 -63495704 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr13 56249262 56249284 -63495614 + AT_rich Low_complexity Low_complexity 1 22 0 330 26 0 0 chr13 56249859 56249898 -63495000 + (TG)n Simple_repeat Simple_repeat 1 39 0 6961 135 87 100 chr13 56250555 56252277 -63492621 - pTR5 LTR ERV1 0 2438 740 2373 288 99 41 chr13 56252369 56253962 -63490936 + L1MEc LINE L1 37 1721 -4675 * 4128 102 51 5 chr13 56253956 56254586 -63490312 - L1PA7 LINE L1 -1303 4843 4185 6641 76 10 0 chr13 56254586 56255862 -63489036 + L1PA7 LINE L1 4858 6143 -11 230 241 0 0 chr13 56255880 56255938 -63488960 + L1MEc LINE L1 1703 1760 -4636 664 233 36 22 chr13 56255994 56256217 -63488681 + L1MEc LINE L1 1864 2089 -4307 639 289 82 26 chr13 56256499 56256879 -63488019 - L1MCc LINE L1 -6006 417 17 * 1042 275 62 26 chr13 56256858 56257778 -63487120 - L1MCc LINE L1 -3637 3304 2387 351 0 0 0 chr13 56257882 56257921 -63486977 + (T)n Simple_repeat Simple_repeat 1 39 0 1199 273 134 27 chr13 56258155 56258987 -63485911 - L1MCc LINE L1 -4892 1531 831 183 80 0 0 chr13 56259379 56259404 -63485494 + (TC)n Simple_repeat Simple_repeat 1 25 0 555 133 83 61 chr13 56259634 56259815 -63485083 - HERVKC4 LTR ERVK -2414 2848 2664 1932 128 0 0 chr13 56259824 56260098 -63484800 + AluSx SINE Alu 25 298 -14 530 296 66 64 chr13 56260124 56260636 -63484262 + MLT1F1 LTR MaLR 69 564 -3 25 75 0 0 chr13 56262233 56262286 -63482612 + AT_rich Low_complexity Low_complexity 1 53 0 394 352 102 0 chr13 56262432 56262608 -63482290 + MIR SINE MIR 53 246 -16 624 288 58 35 chr13 56262611 56262837 -63482061 + MIR SINE MIR 28 258 -4 21 0 0 0 chr13 56262839 56262860 -63482038 + AT_rich Low_complexity Low_complexity 1 21 0 1572 208 64 124 chr13 56263117 56263756 -63481142 - MER77 LTR ERV1 0 605 5 23 33 0 0 chr13 56263770 56263800 -63481098 + AT_rich Low_complexity Low_complexity 1 30 0 1323 227 97 3 chr13 56263801 56264153 -63480745 - L1MA4 LINE L1 -7 6293 5909 22 0 0 0 chr13 56264851 56264873 -63480025 + AT_rich Low_complexity Low_complexity 1 22 0 2804 3 0 0 chr13 56266349 56266654 -63478244 - AluYa5 SINE Alu -6 305 1 1130 162 0 0 chr13 56266710 56266895 -63478003 + AluSx SINE Alu 1 185 -127 1108 176 0 0 chr13 56266939 56267127 -63477771 - AluJ SINE Alu -21 291 104 281 294 41 46 chr13 56267621 56267818 -63477080 + HAL1 LINE L1 2288 2483 -24 378 262 78 7 chr13 56268066 56268207 -63476691 - MER58 DNA MER1_type -3 2417 2267 3047 258 53 35 chr13 56268265 56270013 -63474885 - L1M4c LINE L1 -4488 2158 348 403 250 44 19 chr13 56270073 56270233 -63474665 - L1M4c LINE L1 -6376 166 3 532 243 9 0 chr13 56270810 56270921 -63473977 - AluJ SINE Alu -186 116 5 21 0 0 0 chr13 56271088 56271109 -63473789 + AT_rich Low_complexity Low_complexity 1 21 0 285 87 0 0 chr13 56271269 56271315 -63473583 - L1PA6 LINE L1 -2 6152 6107 797 192 7 120 chr13 56271768 56272059 -63472839 - L1M4 LINE L1 -5425 1117 860 293 240 0 19 chr13 56272275 56272379 -63472519 - HAL1 LINE L1 -305 2202 2101 411 258 75 32 chr13 56272512 56272698 -63472200 - HAL1 LINE L1 -629 1878 1685 24 32 0 0 chr13 56272992 56273023 -63471875 + AT_rich Low_complexity Low_complexity 1 31 0 255 215 0 0 chr13 56273045 56273110 -63471788 + CT-rich Low_complexity Low_complexity 2 66 0 440 284 90 22 chr13 56273110 56273378 -63471520 - HAL1 LINE L1 -1042 1465 1180 29 47 0 0 chr13 56273476 56273519 -63471379 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr13 56273794 56273820 -63471078 + AT_rich Low_complexity Low_complexity 1 26 0 321 327 111 25 chr13 56273934 56274096 -63470802 - HAL1 LINE L1 -1909 598 423 896 261 134 43 chr13 56274100 56274563 -63470335 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr13 56279683 56279704 -63465194 + AT_rich Low_complexity Low_complexity 1 21 0 287 364 45 0 chr13 56280931 56281085 -63463813 + L2 LINE L2 1527 1687 -1627 297 336 128 13 chr13 56281279 56281505 -63463393 + L2 LINE L2 1706 1957 -1357 928 238 30 30 chr13 56281507 56281738 -63463160 + L1M1 LINE L1 251 481 -7084 * 1705 161 18 12 chr13 56281731 56282066 -63462832 + L1M1 LINE L1 2980 3316 -4249 4229 124 12 4 chr13 56282066 56282757 -63462141 + L1MA2 LINE L1 5609 6304 0 359 278 98 20 chr13 56283065 56283320 -63461578 - L1M4 LINE L1 -1673 4473 4199 275 0 0 28 chr13 56283815 56283851 -63461047 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1679 136 43 0 chr13 56283854 56284112 -63460786 - AluSx SINE Alu -43 269 1 43 35 0 0 chr13 56284365 56284422 -63460476 + AT_rich Low_complexity Low_complexity 1 57 0 437 311 104 45 chr13 56284519 56284991 -63459907 - L1M4 LINE L1 -2966 3180 2681 22 88 0 0 chr13 56285325 56285382 -63459516 + AT_rich Low_complexity Low_complexity 1 57 0 1422 207 19 7 chr13 56285855 56286125 -63458773 + MER74C LTR ERVL 1 273 -187 840 260 15 0 chr13 56286165 56286361 -63458537 + MER74C LTR ERVL 262 460 0 2269 206 58 16 chr13 56286361 56286992 -63457906 + HERVL74 LTR ERVL 1 725 -4960 4075 185 34 26 chr13 56286992 56287798 -63457100 + HERVL74 LTR ERVL 2594 3405 -2280 3252 199 39 21 chr13 56287791 56288518 -63456380 + HERVL74 LTR ERVL 3564 4303 -1382 * 22 0 0 0 chr13 56288949 56288971 -63455927 + AT_rich Low_complexity Low_complexity 1 22 0 1751 160 10 13 chr13 56290298 56290598 -63454300 + AluSx SINE Alu 1 299 -13 923 159 61 0 chr13 56291207 56291370 -63453528 + THE1C LTR MaLR 28 200 -175 266 228 0 98 chr13 56291553 56291645 -63453253 + MER5B DNA MER1_type 76 158 -20 1894 141 70 17 chr13 56291858 56292213 -63452685 + THE1C LTR MaLR 1 374 -1 261 0 0 0 chr13 56292832 56292861 -63452037 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1326 211 19 88 chr13 56292886 56293260 -63451638 + MLT1A1 LTR MaLR 11 358 -7 229 366 36 27 chr13 56293357 56293578 -63451320 - MLT1J LTR MaLR -43 468 246 365 0 0 22 chr13 56293595 56293641 -63451257 + (TA)n Simple_repeat Simple_repeat 1 45 0 1784 122 0 85 chr13 56293667 56293986 -63450912 - AluSx SINE Alu -18 294 3 188 273 0 36 chr13 56294837 56294892 -63450006 + L2 LINE L2 1215 1267 -2047 21 0 0 0 chr13 56294894 56294915 -63449983 + AT_rich Low_complexity Low_complexity 1 21 0 198 373 80 20 chr13 56295007 56295157 -63449741 + L2 LINE L2 1396 1554 -1760 1573 152 48 24 chr13 56295247 56295583 -63449315 + L1MA8 LINE L1 5943 6286 -5 239 415 42 4 chr13 56295679 56295920 -63448978 + L2 LINE L2 1755 2004 -1310 3364 257 51 15 chr13 56295920 56297955 -63446943 - L1MB8 LINE L1 -6 6172 4066 261 211 0 0 chr13 56298036 56298093 -63446805 + (TG)n Simple_repeat Simple_repeat 2 58 0 271 307 0 0 chr13 56298095 56298183 -63446715 - L1MC4 LINE L1 -1340 6702 6615 226 283 0 22 chr13 56298166 56298258 -63446640 + L1MC4 LINE L1 6614 6703 -1339 * 269 323 193 39 chr13 56298261 56298825 -63446073 + L2 LINE L2 2096 2746 -568 30 27 0 0 chr13 56298893 56298930 -63445968 + AT_rich Low_complexity Low_complexity 1 37 0 561 258 39 64 chr13 56298931 56299261 -63445637 - L1MC4 LINE L1 -24 8018 7697 253 374 140 0 chr13 56300318 56300497 -63444401 - L3b LINE CR1 -55 1528 1325 211 277 12 24 chr13 56300914 56300997 -63443901 + (TA)n Simple_repeat Simple_repeat 1 82 0 29 60 0 0 chr13 56301027 56301077 -63443821 + AT_rich Low_complexity Low_complexity 1 50 0 50 65 0 0 chr13 56301770 56301862 -63443036 + AT_rich Low_complexity Low_complexity 1 92 0 3087 183 38 8 chr13 56302069 56302720 -63442178 + L1MB1 LINE L1 5515 6185 -4 263 280 32 0 chr13 56303228 56303321 -63441577 - MLT1J2 LTR MaLR -303 147 52 567 228 112 53 chr13 56303523 56303729 -63441169 + MER58A DNA MER1_type 1 218 -6 272 233 0 107 chr13 56304095 56304198 -63440700 - MLT1I LTR MaLR -38 371 280 440 342 19 6 chr13 56304256 56304414 -63440484 - MLT1I LTR MaLR -140 269 110 267 220 5 58 chr13 56305329 56305437 -63439461 - MLT1J2 LTR MaLR -315 196 73 281 98 0 20 chr13 56305671 56305722 -63439176 + (TA)n Simple_repeat Simple_repeat 2 51 0 364 265 28 77 chr13 56305779 56305960 -63438938 + AluSg/x SINE Alu 131 302 0 2939 140 32 4 chr13 56306366 56306831 -63438067 + MER1A DNA MER1_type 52 529 0 242 226 17 0 chr13 56307821 56307888 -63437010 - L1ME2 LINE L1 -3 6159 6092 276 30 0 0 chr13 56307888 56307921 -63436977 + (CA)n Simple_repeat Simple_repeat 2 34 0 910 295 73 36 chr13 56308191 56308835 -63436063 - L1MEc LINE L1 -4602 1794 1127 21 71 0 0 chr13 56310099 56310141 -63434757 + AT_rich Low_complexity Low_complexity 1 42 0 27 92 0 0 chr13 56310713 56310789 -63434109 + AT_rich Low_complexity Low_complexity 1 76 0 1417 314 112 28 chr13 56310875 56311900 -63432998 - L2 LINE L2 -18 3295 2182 623 289 127 3 chr13 56311912 56312227 -63432671 + L1ME1 LINE L1 5756 6109 -57 32 67 0 0 chr13 56312357 56312417 -63432481 + AT_rich Low_complexity Low_complexity 1 60 0 21 82 0 0 chr13 56312543 56312592 -63432306 + AT_rich Low_complexity Low_complexity 1 49 0 673 278 85 67 chr13 56313779 56314462 -63430436 + L1ME2 LINE L1 599 1202 -5003 4917 182 54 24 chr13 56314491 56315656 -63429242 + L1MC1 LINE L1 5122 6315 -18 542 301 62 39 chr13 56315668 56316053 -63428845 + L1ME2 LINE L1 1245 1638 -4577 240 185 0 0 chr13 56316053 56316107 -63428791 + (CATA)n Simple_repeat Simple_repeat 2 55 0 225 0 0 0 chr13 56316147 56316172 -63428726 + (T)n Simple_repeat Simple_repeat 1 25 0 1082 303 76 40 chr13 56316209 56317643 -63427255 + L1ME2 LINE L1 1699 3155 -3060 1699 264 98 22 chr13 56317693 56318501 -63426397 + L1ME2 LINE L1 5365 6233 0 204 161 48 16 chr13 56318509 56318571 -63426327 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 1101 135 41 86 chr13 56318819 56318990 -63425908 + Tigger7 DNA MER2_type 2237 2414 -77 324 0 0 0 chr13 56318990 56319026 -63425872 + (TG)n Simple_repeat Simple_repeat 2 37 0 225 0 0 0 chr13 56319025 56319050 -63425848 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 1101 135 41 86 chr13 56319026 56319145 -63425753 + Tigger7 DNA MER2_type 2414 2491 0 568 340 59 31 chr13 56320507 56320863 -63424035 - L1MCc LINE L1 -4946 1997 1632 662 232 72 57 chr13 56320876 56321156 -63423742 - L1MCc LINE L1 -4899 1524 1282 242 414 44 20 chr13 56321156 56321359 -63423539 - L2 LINE L2 -374 2940 2733 332 425 18 4 chr13 56321449 56321677 -63423221 + MER115 DNA AcHobo 23 253 -440 860 325 40 27 chr13 56322090 56322465 -63422433 - L2 LINE L2 -1076 2238 1859 1788 149 60 41 chr13 56322757 56323125 -63421773 + THE1C LTR MaLR 1 375 0 459 276 78 12 chr13 56323187 56323520 -63421378 - L1M4 LINE L1 -2587 4370 4016 328 271 37 17 chr13 56323895 56324065 -63420833 - L1M4 LINE L1 -6357 498 101 26 64 0 0 chr13 56324654 56324701 -63420197 + AT_rich Low_complexity Low_complexity 1 47 0 1710 120 12 100 chr13 56324802 56325143 -63419755 + AluSx SINE Alu 1 311 -1 24 0 0 0 chr13 56325196 56325220 -63419678 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 56326221 56326250 -63418648 + AT_rich Low_complexity Low_complexity 1 29 0 207 98 49 24 chr13 56326507 56326548 -63418350 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 3571 140 69 46 chr13 56328005 56328944 -63415954 + pTR5 LTR ERV1 735 2028 -410 332 151 57 85 chr13 56328945 56329033 -63415865 + LTR30 LTR ERV1 229 302 -75 1289 115 65 5 chr13 56329033 56329233 -63415665 + LTR12 LTR ERV1 370 581 -133 412 374 53 0 chr13 56329260 56329522 -63415376 + LTR16B LTR ERVL 185 460 -4 568 359 0 15 chr13 56330413 56330608 -63414290 + HERV16 LTR ERVL 1253 1444 -3552 405 299 76 12 chr13 56330842 56331144 -63413754 + HERV16 LTR ERVL 2422 2742 -2743 243 198 94 31 chr13 56331174 56331270 -63413628 + L1M4 LINE L1 4327 4428 -1718 2159 66 0 14 chr13 56331301 56331614 -63413284 - AluY SINE Alu 0 309 1 2151 117 0 3 chr13 56331827 56332125 -63412773 + AluSx SINE Alu 2 298 -14 332 215 61 68 chr13 56332589 56332752 -63412146 + MER104 DNA Tc2 14 175 -5 438 95 81 0 chr13 56334121 56334195 -63410703 + MADE1 DNA Mariner 1 80 0 21 36 0 0 chr13 56334588 56334616 -63410282 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 56335237 56335265 -63409633 + AT_rich Low_complexity Low_complexity 1 28 0 709 181 17 17 chr13 56335265 56335442 -63409456 - L1MA1 LINE L1 0 6302 6126 930 317 162 31 chr13 56335621 56336293 -63408605 + L2 LINE L2 1406 2165 -1149 5691 109 8 2 chr13 56336322 56337167 -63407731 - L1PB1 LINE L1 0 6151 5302 6582 159 10 51 chr13 56337169 56337778 -63407120 - L1M1 LINE L1 -743 6822 6189 303 132 19 0 chr13 56337778 56337831 -63407067 + MADE1 DNA Mariner 2 55 -25 6582 159 10 51 chr13 56337831 56338732 -63406166 - L1M1 LINE L1 -1376 6189 5410 11166 189 88 35 chr13 56338733 56341078 -63403820 - L1M1 LINE L1 -5087 2478 10 2044 201 77 64 chr13 56341169 56341652 -63403246 + MLT2B3 LTR ERVL 1 493 -61 194 0 39 0 chr13 56341652 56341678 -63403220 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 2044 201 77 64 chr13 56341678 56341741 -63403157 + MLT2B3 LTR ERVL 493 554 0 21 0 0 0 chr13 56341998 56342019 -63402879 + AT_rich Low_complexity Low_complexity 1 21 0 2145 125 0 0 chr13 56342029 56342324 -63402574 + AluSx SINE Alu 1 295 -17 2023 111 0 0 chr13 56343472 56343774 -63401124 - AluSg SINE Alu 0 302 1 470 248 0 9 chr13 56345351 56345464 -63399434 - MER5A DNA MER1_type -76 113 2 559 288 38 38 chr13 56345582 56345794 -63399104 + MIR SINE MIR 41 252 -10 1779 153 0 13 chr13 56345794 56346094 -63398804 + AluSx SINE Alu 1 296 -16 1363 182 40 4 chr13 56347204 56347457 -63397441 - Tigger5 DNA MER2_type -8 2315 2054 3163 134 35 14 chr13 56347457 56347949 -63396949 - MER1A DNA MER1_type 0 529 28 6664 233 76 42 chr13 56347991 56349968 -63394930 - Tigger5 DNA MER2_type -261 2062 20 9372 41 1 0 chr13 56351264 56353181 -63391717 - L1PA5 LINE L1 -3 6151 4233 26 30 0 0 chr13 56353582 56353615 -63391283 + AT_rich Low_complexity Low_complexity 1 33 0 489 34 0 0 chr13 56354826 56354885 -63390013 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 9048 194 28 2 chr13 56355224 56357649 -63387249 + L1PB1 LINE L1 3309 5788 -363 235 236 11 11 chr13 56357666 56357755 -63387143 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 409 210 0 0 chr13 56357758 56357839 -63387059 + L1 LINE L1 4511 4591 -1555 198 0 0 0 chr13 56357862 56357884 -63387014 + (TA)n Simple_repeat Simple_repeat 2 23 0 2391 120 6 0 chr13 56357884 56358241 -63386657 + L1PB1 LINE L1 5793 6151 0 22 0 0 0 chr13 56358297 56358319 -63386579 + AT_rich Low_complexity Low_complexity 1 22 0 3622 155 33 14 chr13 56358323 56358986 -63385912 - L1PB3 LINE L1 -3 6867 6192 230 0 33 0 chr13 56359010 56359040 -63385858 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1743 75 0 0 chr13 56359040 56359267 -63385631 - L1PA7 LINE L1 -13 6141 5915 12647 217 22 24 chr13 56359268 56363498 -63381400 - L1PB3 LINE L1 -671 6196 1919 1879 139 0 38 chr13 56363557 56363874 -63381024 + AluSx SINE Alu 1 305 -7 229 333 129 0 chr13 56364127 56364259 -63380639 - MIR SINE MIR -49 213 65 5890 242 32 26 chr13 56364329 56367180 -63377718 - L1PB3 LINE L1 -4937 1926 3 427 92 0 15 chr13 56367285 56367350 -63377548 + L1PA10 LINE L1 6100 6163 -5 4106 116 20 2 chr13 56367371 56367977 -63376921 + L1PA11 LINE L1 5558 6174 0 2843 223 67 12 chr13 56368873 56369050 -63375848 - L1MB7 LINE L1 -16 6168 6002 2132 161 20 54 chr13 56369050 56369497 -63375401 + MSTB1 LTR MaLR 1 432 0 2843 223 67 12 chr13 56369497 56370083 -63374815 - L1MB7 LINE L1 -182 6002 5363 3433 250 96 73 chr13 56370084 56372207 -63372691 - L1MB7 LINE L1 -1356 4790 2620 1419 95 0 62 chr13 56372209 56372444 -63372454 - AluSq SINE Alu 0 306 85 1314 272 58 41 chr13 56372517 56372803 -63372095 - L1M4c LINE L1 -4585 1797 1517 2308 66 0 3 chr13 56372803 56373090 -63371808 - AluY SINE Alu -17 294 9 1314 272 58 41 chr13 56373090 56373594 -63371304 - L1M4c LINE L1 -4865 1517 907 39 50 0 0 chr13 56373787 56373847 -63371051 + AT_rich Low_complexity Low_complexity 1 60 0 1015 216 14 19 chr13 56373911 56374124 -63370774 + AluJo SINE Alu 7 218 -94 234 0 0 0 chr13 56374158 56374184 -63370714 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 181 382 130 8 chr13 56375412 56375650 -63369248 - L2 LINE L2 -1607 1707 1441 461 166 58 29 chr13 56376387 56376526 -63368372 - L1M4 LINE L1 -5477 1065 923 2228 249 17 2 chr13 56376526 56377004 -63367894 + Tigger7 DNA MER2_type 1 485 -248 438 211 0 0 chr13 56377010 56377086 -63367812 + Tigger7 DNA MER2_type 2397 2472 -15 2630 258 42 63 chr13 56377091 56378016 -63366882 - L1M4 LINE L1 -5636 906 1 231 36 0 0 chr13 56378197 56378225 -63366673 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 104 0 0 chr13 56378556 56378633 -63366265 + AT_rich Low_complexity Low_complexity 1 77 0 24 32 0 0 chr13 56378803 56378834 -63366064 + AT_rich Low_complexity Low_complexity 1 31 0 252 368 59 13 chr13 56379422 56379661 -63365237 - L1MC/D LINE L1 -1981 5827 5578 537 341 127 28 chr13 56379988 56380524 -63364374 - HAL1 LINE L1 -850 1657 1069 222 121 35 17 chr13 56380712 56380770 -63364128 + (TA)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chr13 56382141 56382169 -63362729 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr13 56382246 56382289 -63362609 + AT_rich Low_complexity Low_complexity 1 43 0 6297 189 29 11 chr13 56383521 56385690 -63359208 - L1PA15 LINE L1 -18 6147 3943 2179 202 76 18 chr13 56386039 56386550 -63358348 + L1MD1 LINE L1 5702 6242 0 4509 223 26 21 chr13 56386818 56386912 -63357986 + L1MB1 LINE L1 4161 4253 -1915 189 0 0 0 chr13 56386912 56386933 -63357965 + (CA)n Simple_repeat Simple_repeat 2 22 0 4509 223 26 21 chr13 56386933 56388136 -63356762 + L1MB1 LINE L1 4253 5466 -702 1168 246 71 9 chr13 56388140 56388309 -63356589 + MLT1A2 LTR MaLR 1 158 -216 342 0 0 0 chr13 56388309 56388347 -63356551 + (TC)n Simple_repeat Simple_repeat 2 39 0 1168 246 71 9 chr13 56388347 56388502 -63356396 + MLT1A2 LTR MaLR 158 345 -29 1003 195 37 45 chr13 56388514 56388760 -63356138 + L1MB1 LINE L1 5489 5732 -602 586 141 24 65 chr13 56388807 56388965 -63355933 + L1MB1 LINE L1 6021 6164 -7 2751 240 51 46 chr13 56388968 56389864 -63355034 + L1MD1 LINE L1 5328 6228 -14 253 302 10 52 chr13 56390544 56390640 -63354258 - MIR SINE MIR -98 110 19 1616 194 3 78 chr13 56390922 56391304 -63353594 - MLT1B LTR MaLR -35 355 3 33 56 0 0 chr13 56392658 56392712 -63352186 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr13 56392736 56392765 -63352133 + AT_rich Low_complexity Low_complexity 1 29 0 277 273 180 42 chr13 56392958 56393247 -63351651 + MER46C DNA MER2_type 2 330 -8 232 350 40 40 chr13 56393874 56394074 -63350824 + L2 LINE L2 3014 3213 -100 202 385 67 37 chr13 56394784 56394919 -63349979 + L2 LINE L2 3134 3272 0 216 0 0 0 chr13 56395566 56395590 -63349308 + (TA)n Simple_repeat Simple_repeat 1 24 0 28 0 0 0 chr13 56395741 56395769 -63349129 + AT_rich Low_complexity Low_complexity 1 28 0 5467 266 70 39 chr13 56396182 56396603 -63348295 - L1 LINE L1 -2010 5157 4750 315 0 0 0 chr13 56396603 56396638 -63348260 + (TG)n Simple_repeat Simple_repeat 1 35 0 5467 266 70 39 chr13 56396638 56399022 -63345876 - L1 LINE L1 -2417 4750 2463 2389 68 7 0 chr13 56399022 56399329 -63345569 - AluY SINE Alu -2 309 1 5467 266 70 39 chr13 56399329 56400998 -63343900 - L1 LINE L1 -4704 2463 847 316 298 177 14 chr13 56401141 56401282 -63343616 + MER5A DNA MER1_type 23 186 -3 309 383 78 0 chr13 56401459 56401639 -63343259 + L2 LINE L2 2377 2570 -744 2026 120 3 0 chr13 56402181 56402464 -63342434 + AluSx SINE Alu 1 284 -28 463 74 87 3 chr13 56402464 56402770 -63342128 + (TA)n Simple_repeat Simple_repeat 1 331 0 222 190 0 35 chr13 56403070 56403128 -63341770 + (TA)n Simple_repeat Simple_repeat 1 56 0 605 294 109 27 chr13 56404656 56404949 -63339949 - MLT1I LTR MaLR 0 409 93 385 275 81 34 chr13 56405803 56405952 -63338946 - MLT1H LTR MaLR -292 257 102 237 33 0 0 chr13 56406169 56406199 -63338699 + (TG)n Simple_repeat Simple_repeat 1 30 0 215 214 0 0 chr13 56406209 56406251 -63338647 + GA-rich Low_complexity Low_complexity 2 43 0 26 0 0 0 chr13 56407731 56407757 -63337141 + AT_rich Low_complexity Low_complexity 1 26 0 180 360 35 0 chr13 56408192 56408278 -63336620 + MIR SINE MIR 93 181 -81 324 70 0 0 chr13 56408279 56408322 -63336576 + (TA)n Simple_repeat Simple_repeat 1 43 0 254 228 18 0 chr13 56408322 56408379 -63336519 + L1MD1 LINE L1 5930 5987 -255 289 222 172 10 chr13 56408389 56408488 -63336410 + L1MD1 LINE L1 5930 6044 -198 26 64 0 0 chr13 56409908 56409955 -63334943 + AT_rich Low_complexity Low_complexity 1 47 0 213 94 0 0 chr13 56410121 56410153 -63334745 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 2595 182 29 11 chr13 56410174 56410775 -63334123 - L1MC/D LINE L1 -542 5791 5177 441 0 0 0 chr13 56410775 56410824 -63334074 + (TTA)n Simple_repeat Simple_repeat 3 51 0 6494 76 5 0 chr13 56410824 56412310 -63332588 - L1PA7 LINE L1 -18 6451 4963 3979 80 24 0 chr13 56412310 56412851 -63332047 + L1PA7 LINE L1 5428 5981 -173 * 16174 108 10 10 chr13 56412850 56417331 -63327567 - L1PA7 LINE L1 -1972 4489 2 2770 262 53 14 chr13 56417331 56418353 -63326545 - L1MC/D LINE L1 -958 5188 4127 1151 209 17 20 chr13 56418356 56418653 -63326245 - L1 LINE L1 -1494 4967 4672 210 291 0 0 chr13 56418883 56418938 -63325960 + CT-rich Low_complexity Low_complexity 1 55 0 1297 113 48 9 chr13 56419465 56419694 -63325204 - L1PA12 LINE L1 -4734 2847 2610 1853 160 3 0 chr13 56420033 56420326 -63324572 + AluSx SINE Alu 1 294 -18 475 327 0 46 chr13 56420404 56420621 -63324277 + LTR16A1 LTR ERVL 249 455 -2 375 325 16 55 chr13 56421163 56421418 -63323480 + HERV16 LTR ERVL 910 1154 -3842 615 235 8 0 chr13 56421683 56421815 -63323083 - AluJb SINE Alu -179 133 1 2181 145 136 13 chr13 56421924 56422387 -63322511 - L1MA4A LINE L1 -2 6301 5781 23 86 0 0 chr13 56422542 56422600 -63322298 + AT_rich Low_complexity Low_complexity 1 58 0 484 300 27 0 chr13 56473645 56473795 -63271103 - MLT1E LTR MaLR -49 544 391 270 116 0 0 chr13 56473872 56473915 -63270983 + (TCCCC)n Simple_repeat Simple_repeat 5 47 0 1884 109 29 4 chr13 56473923 56474197 -63270701 - AluSq SINE Alu -32 281 1 2043 104 10 3 chr13 56475389 56475688 -63269210 - AluSx SINE Alu -9 303 3 1764 144 18 64 chr13 56475795 56476122 -63268776 + AluSx SINE Alu 1 312 0 7005 33 1 2 chr13 56476430 56477287 -63267611 - L1P LINE L1 -932 5214 4359 7094 26 4 0 chr13 56477287 56478127 -63266771 + L1PA4 LINE L1 5307 6150 -5 2232 143 110 7 chr13 56478129 56478547 -63266351 - MER57-int LTR ERV1 -3561 3976 3516 289 222 172 10 chr13 56479979 56480078 -63264820 - L1MD1 LINE L1 -198 6044 5930 254 228 18 0 chr13 56480088 56480145 -63264753 - L1MD1 LINE L1 -255 5987 5930 324 70 0 0 chr13 56480145 56480188 -63264710 + (TA)n Simple_repeat Simple_repeat 1 43 0 180 360 35 0 chr13 56480189 56480275 -63264623 - MIR SINE MIR -81 181 93 26 0 0 0 chr13 56480710 56480736 -63264162 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr13 56481376 56481405 -63263493 + AT_rich Low_complexity Low_complexity 1 29 0 215 214 0 0 chr13 56482216 56482258 -63262640 + CT-rich Low_complexity Low_complexity 2 43 0 237 33 0 0 chr13 56482268 56482298 -63262600 + (CA)n Simple_repeat Simple_repeat 1 30 0 385 275 81 34 chr13 56482515 56482664 -63262234 + MLT1H LTR MaLR 102 257 -292 605 294 109 27 chr13 56483518 56483811 -63261087 + MLT1I LTR MaLR 93 409 0 222 190 0 35 chr13 56485339 56485397 -63259501 + (TA)n Simple_repeat Simple_repeat 1 56 0 35 24 0 0 chr13 56485693 56485735 -63259163 + AT_rich Low_complexity Low_complexity 1 42 0 510 62 94 0 chr13 56485735 56485895 -63259003 + (TA)n Simple_repeat Simple_repeat 1 175 0 39 0 0 0 chr13 56485895 56485934 -63258964 + AT_rich Low_complexity Low_complexity 1 39 0 462 89 70 6 chr13 56485934 56486091 -63258807 + (TA)n Simple_repeat Simple_repeat 1 167 0 2026 120 3 0 chr13 56486091 56486374 -63258524 - AluSx SINE Alu -28 284 1 309 383 78 0 chr13 56486916 56487096 -63257802 - L2 LINE L2 -744 2570 2377 316 298 177 14 chr13 56487273 56487414 -63257484 - MER5A DNA MER1_type -3 186 23 5491 265 67 34 chr13 56487557 56489226 -63255672 + L1M2a LINE L1 847 2460 -4707 2406 68 7 0 chr13 56489226 56489535 -63255363 + AluY SINE Alu 1 311 0 5491 265 67 34 chr13 56489535 56491914 -63252984 + L1M2a LINE L1 2460 4751 -2416 279 0 0 0 chr13 56491914 56491945 -63252953 + (CA)n Simple_repeat Simple_repeat 1 31 0 5491 265 67 34 chr13 56491945 56492366 -63252532 + L1M2a LINE L1 4751 5157 -2010 28 0 0 0 chr13 56492779 56492807 -63252091 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr13 56492958 56492988 -63251910 + (TA)n Simple_repeat Simple_repeat 1 30 0 202 385 67 37 chr13 56493635 56493770 -63251128 - L2 LINE L2 0 3272 3134 232 350 40 40 chr13 56494480 56494680 -63250218 - L2 LINE L2 -100 3213 3014 277 273 180 42 chr13 56495307 56495596 -63249302 - MER46C DNA MER2_type -8 330 2 22 35 0 0 chr13 56495789 56495818 -63249080 + AT_rich Low_complexity Low_complexity 1 29 0 33 56 0 0 chr13 56495842 56495896 -63249002 + AT_rich Low_complexity Low_complexity 1 54 0 1616 194 3 78 chr13 56497250 56497632 -63247266 + MLT1B LTR MaLR 3 355 -35 253 302 10 52 chr13 56497914 56498010 -63246888 + MIR SINE MIR 19 110 -98 2751 240 51 46 chr13 56498690 56499586 -63245312 - L1MD1 LINE L1 -14 6228 5328 586 141 24 65 chr13 56499589 56499747 -63245151 - L1MB1 LINE L1 -7 6164 6021 1003 195 37 45 chr13 56499794 56500040 -63244858 - L1MB1 LINE L1 -602 5732 5489 1168 246 71 9 chr13 56500052 56500207 -63244691 - MLT1A2 LTR MaLR -29 345 201 342 0 0 0 chr13 56500207 56500245 -63244653 + (GA)n Simple_repeat Simple_repeat 2 39 0 1168 246 71 9 chr13 56500245 56500414 -63244484 - MLT1A2 LTR MaLR -173 201 1 4509 223 26 21 chr13 56500418 56501621 -63243277 - L1MB1 LINE L1 -702 5466 4253 189 0 0 0 chr13 56501621 56501642 -63243256 + (TG)n Simple_repeat Simple_repeat 2 22 0 4509 223 26 21 chr13 56501642 56501736 -63243162 - L1MB1 LINE L1 -1915 4253 4161 2179 202 76 18 chr13 56502004 56502515 -63242383 - L1MD1 LINE L1 0 6242 5702 6353 189 29 11 chr13 56502864 56505034 -63239864 + L1PA15 LINE L1 3943 6147 -18 29 47 0 0 chr13 56506266 56506309 -63238589 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr13 56506386 56506414 -63238484 + AT_rich Low_complexity Low_complexity 1 28 0 222 121 35 17 chr13 56507785 56507843 -63237055 + (TA)n Simple_repeat Simple_repeat 1 59 0 537 341 127 28 chr13 56508031 56508567 -63236331 + HAL1 LINE L1 1069 1657 -850 252 368 59 13 chr13 56508894 56509133 -63235765 + L1MC/D LINE L1 5578 5827 -1981 24 32 0 0 chr13 56509721 56509752 -63235146 + AT_rich Low_complexity Low_complexity 1 31 0 21 104 0 0 chr13 56509922 56509999 -63234899 + AT_rich Low_complexity Low_complexity 1 77 0 231 36 0 0 chr13 56510330 56510358 -63234540 + (TG)n Simple_repeat Simple_repeat 1 28 0 2636 259 42 62 chr13 56510539 56511463 -63233435 + L1MB7 LINE L1 1 906 -5636 438 211 0 0 chr13 56511468 56511544 -63233354 - Tigger7 DNA MER2_type -15 2476 2401 2228 249 17 2 chr13 56511550 56512028 -63232870 - Tigger7 DNA MER2_type -248 485 1 2010 255 68 52 chr13 56512028 56512768 -63232130 + L1MB7 LINE L1 923 1779 -4865 2319 63 0 3 chr13 56512768 56513055 -63231843 + AluY SINE Alu 9 294 -17 2010 255 68 52 chr13 56513055 56513341 -63231557 + L1MB7 LINE L1 1779 2059 -4585 1420 95 0 62 chr13 56513414 56513649 -63231249 + AluSq SINE Alu 85 306 0 3413 248 97 74 chr13 56513651 56515774 -63229124 + L1MB7 LINE L1 3118 5288 -1356 2843 223 67 12 chr13 56515775 56516361 -63228537 + L1MB7 LINE L1 5861 6500 -182 2132 161 20 54 chr13 56516361 56516808 -63228090 - MSTB1 LTR MaLR 0 432 1 2843 223 67 12 chr13 56516808 56516985 -63227913 + L1MB7 LINE L1 6500 6666 -16 4106 116 20 2 chr13 56517881 56518487 -63226411 - L1PA11 LINE L1 0 6174 5558 347 85 0 146 chr13 56518489 56518571 -63226327 - L1PA7 LINE L1 0 6154 6085 5890 240 31 25 chr13 56518678 56521529 -63223369 + L1PB3 LINE L1 3 1926 -4937 229 333 129 0 chr13 56521599 56521731 -63223167 + MIR SINE MIR 65 213 -49 1885 139 0 35 chr13 56521984 56522300 -63222598 - AluSx SINE Alu -7 305 1 12643 214 22 29 chr13 56522359 56526600 -63218298 + L1PB3 LINE L1 1919 6199 -668 1744 75 0 0 chr13 56526600 56526855 -63218043 + L1PA7 LINE L1 5915 6171 0 3622 155 33 14 chr13 56526879 56527542 -63217356 + L1PB3 LINE L1 6192 6867 -3 22 0 0 0 chr13 56527546 56527568 -63217330 + AT_rich Low_complexity Low_complexity 1 22 0 2407 118 6 0 chr13 56527624 56527981 -63216917 - L1PB1 LINE L1 0 6151 5793 414 0 0 0 chr13 56527981 56528027 -63216871 + (TA)n Simple_repeat Simple_repeat 2 47 0 409 210 0 0 chr13 56528050 56528131 -63216767 - L1 LINE L1 -1555 4591 4511 309 307 20 0 chr13 56528131 56528232 -63216666 - L1MC4 LINE L1 -1336 6706 6604 9059 193 28 2 chr13 56528242 56530667 -63214231 - L1P5 LINE L1 -363 5788 3309 525 32 0 0 chr13 56531006 56531069 -63213829 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 26 30 0 0 chr13 56532276 56532309 -63212589 + AT_rich Low_complexity Low_complexity 1 33 0 9372 41 1 0 chr13 56532710 56534627 -63210271 + L1PA5 LINE L1 4233 6151 -3 6664 233 76 42 chr13 56535923 56537900 -63206998 + Tigger5 DNA MER2_type 20 2062 -261 3170 132 35 16 chr13 56537942 56538435 -63206463 + MER1A DNA MER1_type 28 529 0 1363 182 40 4 chr13 56538435 56538688 -63206210 + Tigger5 DNA MER2_type 2054 2315 -8 32 0 0 0 chr13 56539820 56539852 -63205046 + AT_rich Low_complexity Low_complexity 1 32 0 195 232 0 0 chr13 56540564 56540646 -63204252 + (TA)n Simple_repeat Simple_repeat 2 83 0 1080 203 107 38 chr13 56541001 56541366 -63203532 + MLT1B LTR MaLR 1 390 0 1841 238 100 38 chr13 56541405 56541965 -63202933 + MER76 LTR ERV 94 688 0 180 0 0 0 chr13 56542148 56542168 -63202730 + (TA)n Simple_repeat Simple_repeat 1 20 0 291 28 0 0 chr13 56542602 56542638 -63202260 + (CA)n Simple_repeat Simple_repeat 1 36 0 1906 159 120 26 chr13 56542650 56543041 -63201857 - MSTA LTR MaLR 0 428 1 8386 190 39 2 chr13 56543041 56544634 -63200264 - MSTA-int LTR MaLR 0 1651 1 1966 136 23 3 chr13 56544680 56544982 -63199916 + AluSx SINE Alu 3 310 -2 3839 200 34 12 chr13 56545023 56546542 -63198356 + L1PB4 LINE L1 4588 6149 -7 22 0 0 0 chr13 56547378 56547400 -63197498 + AT_rich Low_complexity Low_complexity 1 22 0 572 282 52 36 chr13 56548115 56548424 -63196474 - Charlie8 DNA MER1_type -1997 420 107 196 365 17 52 chr13 56548662 56548777 -63196121 - MIR SINE MIR -131 131 21 242 28 0 28 chr13 56549068 56549104 -63195794 + (TA)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr13 56549103 56549124 -63195774 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 24 53 0 0 chr13 56550512 56550550 -63194348 + AT_rich Low_complexity Low_complexity 1 38 0 2085 24 0 4 chr13 56550838 56551090 -63193808 - L1PA4 LINE L1 0 6155 5905 304 85 0 4 chr13 56551090 56551131 -63193767 - L1P3 LINE L1 -399 5756 5725 21 82 0 0 chr13 56551429 56551478 -63193420 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr13 56551633 56551655 -63193243 + AT_rich Low_complexity Low_complexity 1 22 0 257 167 42 0 chr13 56552850 56552898 -63192000 + ERVL-F LTR ERVL 3775 3824 -1940 498 207 62 98 chr13 56552981 56553174 -63191724 + ERVL-F LTR ERVL 5562 5747 -17 397 286 21 36 chr13 56553174 56553314 -63191584 + MLT2F LTR ERVL 2 139 -524 389 236 15 146 chr13 56553318 56553517 -63191381 + MLT1E1 LTR MaLR 61 233 -391 375 223 43 36 chr13 56553711 56553850 -63191048 + ERVL LTR ERVL 2 141 -5623 1353 279 13 29 chr13 56553893 56554276 -63190622 + MLT1E1 LTR MaLR 278 654 0 2128 101 0 7 chr13 56554294 56554604 -63190294 - AluSq SINE Alu 0 309 2 348 317 35 7 chr13 56554741 56554883 -63190015 + MLT1J2 LTR MaLR 37 182 -268 224 109 0 43 chr13 56555314 56555360 -63189538 + (TTCTCC)n Simple_repeat Simple_repeat 5 48 0 293 296 33 37 chr13 56555363 56555740 -63189158 - L1MCb LINE L1 -4882 1163 1062 3698 236 59 17 chr13 56555752 56557836 -63187062 - L1MB7 LINE L1 -117 6067 3890 44 0 0 0 chr13 56557904 56557948 -63186950 + AT_rich Low_complexity Low_complexity 1 44 0 222 191 0 0 chr13 56559803 56559850 -63185048 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 28 71 0 0 chr13 56559989 56560045 -63184853 + AT_rich Low_complexity Low_complexity 1 56 0 1421 235 54 22 chr13 56560599 56561004 -63183894 - LTR52 LTR ERVL -3 418 1 998 185 5 33 chr13 56563329 56563513 -63181385 - MER20 DNA MER1_type -40 179 1 2264 110 0 0 chr13 56564526 56564827 -63180071 + AluY SINE Alu 1 301 -10 6736 83 1 4 chr13 56564835 56565955 -63178943 + L1PA8 LINE L1 5055 6172 0 24 0 0 0 chr13 56565955 56565979 -63178919 + AT_rich Low_complexity Low_complexity 1 24 0 2207 200 25 35 chr13 56567391 56567880 -63177018 - MER44D DNA MER2_type -3 602 64 397 335 70 22 chr13 56567939 56568124 -63176774 + MIR SINE MIR 19 212 -50 231 364 85 54 chr13 56570643 56570995 -63173903 + L2 LINE L2 255 617 -2697 25 51 0 0 chr13 56571061 56571100 -63173798 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chr13 56574229 56574262 -63170636 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr13 56574860 56574898 -63170000 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 56575114 56575142 -63169756 + AT_rich Low_complexity Low_complexity 1 28 0 835 224 25 5 chr13 56576536 56576737 -63168161 + MER3 DNA MER1_type 5 209 0 347 363 59 34 chr13 56576804 56577159 -63167739 - L2 LINE L2 -19 3294 2931 1328 304 71 34 chr13 56577164 56577730 -63167168 + MLT1E LTR MaLR 6 592 -1 480 340 69 49 chr13 56577768 56578174 -63166724 - L2 LINE L2 -459 2855 2442 397 95 0 27 chr13 56578199 56578273 -63166625 + (TTCCC)n Simple_repeat Simple_repeat 3 74 0 246 83 0 0 chr13 56578377 56578413 -63166485 + Alu SINE Alu 258 293 -9 245 341 102 28 chr13 56578878 56579054 -63165844 + MER5A DNA MER1_type 1 189 0 1454 191 11 11 chr13 56579524 56579797 -63165101 + AluJo SINE Alu 11 283 -29 261 0 0 0 chr13 56580018 56580047 -63164851 + (CA)n Simple_repeat Simple_repeat 2 30 0 3490 242 77 40 chr13 56582861 56585382 -63159516 - L1MD1 LINE L1 -12 6230 3635 24 32 0 0 chr13 56585485 56585516 -63159382 + AT_rich Low_complexity Low_complexity 1 31 0 32 67 0 0 chr13 56585584 56585644 -63159254 + AT_rich Low_complexity Low_complexity 1 60 0 912 210 126 68 chr13 56586197 56586506 -63158392 + MLT1A1 LTR MaLR 37 363 -2 238 312 35 55 chr13 56586529 56586728 -63158170 + L2 LINE L2 1858 2052 -1262 1007 168 23 37 chr13 56586824 56587038 -63157860 + L1MC3 LINE L1 5683 5893 -1892 2125 128 48 31 chr13 56587084 56587442 -63157456 + THE1B LTR MaLR 1 364 0 10120 110 4 1 chr13 56587442 56588846 -63156052 + THE1B-int LTR MaLR 1 1408 -172 606 307 148 43 chr13 56588852 56589600 -63155298 + L2 LINE L2 2461 3313 0 1711 174 0 0 chr13 56589984 56590249 -63154649 - AluSx SINE Alu -47 265 1 36 23 0 0 chr13 56590286 56590329 -63154569 + AT_rich Low_complexity Low_complexity 1 43 0 248 83 0 0 chr13 56590622 56590658 -63154240 - HSMAR1 DNA Mariner -1251 36 1 414 0 0 0 chr13 56590796 56590842 -63154056 + (TA)n Simple_repeat Simple_repeat 1 46 0 276 276 173 39 chr13 56590929 56591085 -63153813 + L2 LINE L2 3133 3309 -4 964 106 0 183 chr13 56591086 56591321 -63153577 - 7SK RNA RNA 0 193 2 1624 231 153 52 chr13 56591761 56592498 -63152400 + LTR1B LTR ERV1 15 826 0 224 204 0 0 chr13 56592565 56592609 -63152289 + (CA)n Simple_repeat Simple_repeat 1 44 0 243 233 128 23 chr13 56593262 56593348 -63151550 - L2 LINE L2 0 3272 3178 1439 173 42 48 chr13 56593371 56593660 -63151238 - AluSg1 SINE Alu -22 287 1 24 53 0 0 chr13 56593967 56594005 -63150893 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr13 56594288 56594315 -63150583 + AT_rich Low_complexity Low_complexity 1 27 0 319 301 53 26 chr13 56595088 56595201 -63149697 + MIR SINE MIR 130 245 -17 448 320 66 20 chr13 56595224 56595468 -63149430 + MIR SINE MIR 8 262 0 234 333 34 45 chr13 56595943 56596120 -63148778 - L1ME3A LINE L1 -109 6061 5887 2234 107 7 0 chr13 56596123 56596421 -63148477 - AluSx SINE Alu -7 305 6 23 0 0 0 chr13 56597373 56597396 -63147502 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 56597626 56597647 -63147251 + AT_rich Low_complexity Low_complexity 1 21 0 1995 239 31 55 chr13 56598964 56599614 -63145284 + MER76 LTR ERV 1 634 -54 1664 126 15 30 chr13 56599638 56599907 -63144991 - MER50 LTR ERV1 -37 697 433 1386 135 17 4 chr13 56599896 56600126 -63144772 - MER50 LTR ERV1 -501 233 1 * 21 36 0 0 chr13 56602170 56602198 -63142700 + AT_rich Low_complexity Low_complexity 1 28 0 193 182 15 15 chr13 56602332 56602398 -63142500 + (TA)n Simple_repeat Simple_repeat 1 66 0 444 324 33 11 chr13 56603386 56603568 -63141330 + MIR SINE MIR 66 251 -11 313 299 176 49 chr13 56603744 56604152 -63140746 + L1ME4a LINE L1 5536 5995 -126 245 219 85 12 chr13 56604479 56604561 -63140337 + MIR SINE MIR 99 186 -76 2073 143 3 0 chr13 56604578 56604926 -63139972 + AluSx SINE Alu 3 351 0 273 310 39 64 chr13 56605019 56605222 -63139676 - MIR SINE MIR -1 261 64 3145 181 46 25 chr13 56605604 56606239 -63138659 - L1MB3 LINE L1 -36 6147 5500 7486 133 131 37 chr13 56606239 56607791 -63137107 + pTR5 LTR ERV1 742 2438 0 851 190 42 59 chr13 56607799 56607962 -63136936 - L1MB3 LINE L1 -688 5492 5328 1805 111 40 34 chr13 56607962 56608259 -63136639 - AluY SINE Alu -10 301 3 851 190 42 59 chr13 56608259 56608496 -63136402 - L1MB3 LINE L1 -852 5328 5092 335 212 0 59 chr13 56608500 56608607 -63136291 - L1M4 LINE L1 -3856 2526 2426 26 30 0 0 chr13 56609025 56609058 -63135840 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 56610666 56610687 -63134211 + AT_rich Low_complexity Low_complexity 1 21 0 271 289 167 33 chr13 56611012 56611192 -63133706 - MIR SINE MIR -1 261 58 180 388 67 29 chr13 56611460 56611501 -63133397 + MIR SINE MIR 11 49 -213 821 269 14 0 chr13 56611501 56611717 -63133181 + MER20 DNA MER1_type 1 219 0 180 388 67 29 chr13 56611717 56611915 -63132983 + MIR SINE MIR 49 259 -3 41 48 0 0 chr13 56612070 56612132 -63132766 + AT_rich Low_complexity Low_complexity 1 62 0 23 0 0 0 chr13 56612326 56612349 -63132549 + AT_rich Low_complexity Low_complexity 1 23 0 257 278 0 0 chr13 56612480 56612552 -63132346 + (TATG)n Simple_repeat Simple_repeat 3 74 0 25 65 0 0 chr13 56613001 56613047 -63131851 + AT_rich Low_complexity Low_complexity 1 46 0 1226 201 4 4 chr13 56614206 56614445 -63130453 + L1PA16 LINE L1 5912 6150 -16 1264 199 33 52 chr13 56615073 56615511 -63129387 + MER52A LTR ERV1 664 1230 -525 295 296 52 35 chr13 56615547 56615662 -63129236 + MER52A LTR ERV1 1232 1348 -407 * 391 266 6 51 chr13 56615636 56615794 -63129104 + LTR28 LTR ERV1 572 722 -298 1813 223 0 40 chr13 56615957 56616379 -63128519 + MER52A LTR ERV1 1351 1755 0 392 66 0 16 chr13 56616379 56616440 -63128458 + (TA)n Simple_repeat Simple_repeat 1 60 0 242 182 0 91 chr13 56616440 56616550 -63128348 - L1MC4 LINE L1 -1333 6709 6610 22 56 0 0 chr13 56616720 56616756 -63128142 + AT_rich Low_complexity Low_complexity 1 36 0 2133 121 3 0 chr13 56616870 56617168 -63127730 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr13 56618653 56618678 -63126220 + AT_rich Low_complexity Low_complexity 1 25 0 2178 113 0 0 chr13 56619533 56619825 -63125073 + AluSc SINE Alu 1 292 -17 1984 172 105 0 chr13 56620376 56620765 -63124133 - MSTB1 LTR MaLR -2 430 1 1854 162 0 0 chr13 56620950 56621264 -63123634 + L1 LINE L1 4875 5188 -958 23 0 0 0 chr13 56622369 56622392 -63122506 + AT_rich Low_complexity Low_complexity 1 23 0 2972 147 143 22 chr13 56622998 56623629 -63121269 + MER39 LTR ERV1 1 707 0 49 76 0 0 chr13 56623817 56623922 -63120976 + AT_rich Low_complexity Low_complexity 1 105 0 2334 87 3 6 chr13 56624280 56624592 -63120306 + AluSx SINE Alu 1 311 -1 231 303 14 32 chr13 56624990 56625208 -63119690 - L1M4 LINE L1 -915 5231 5018 28 48 0 0 chr13 56625228 56625270 -63119628 + AT_rich Low_complexity Low_complexity 1 42 0 317 322 55 35 chr13 56625284 56625542 -63119356 - L1M4 LINE L1 -2415 3731 3480 2044 81 0 0 chr13 56625542 56625814 -63119084 - L1PA6 LINE L1 0 6154 5883 317 322 55 35 chr13 56625814 56626068 -63118830 - L1M4 LINE L1 -2666 3480 3209 482 379 17 4 chr13 56626112 56626352 -63118546 + LTR16A LTR ERVL 55 297 -153 914 329 82 2 chr13 56626384 56626810 -63118088 + HERV16 LTR ERVL 934 1393 -3603 381 229 0 0 chr13 56626869 56626939 -63117959 - MER30 DNA MER1_type 0 230 161 198 0 0 0 chr13 56627845 56627867 -63117031 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 21 71 0 0 chr13 56629785 56629827 -63115071 + AT_rich Low_complexity Low_complexity 1 42 0 24 89 0 30 chr13 56630062 56630163 -63114735 + AT_rich Low_complexity Low_complexity 1 98 0 506 178 10 2 chr13 56630239 56630348 -63114550 - L1M2 LINE L1 -555 5601 5494 215 192 154 26 chr13 56630352 56630430 -63114468 + L2 LINE L2 2325 2412 -902 468 312 134 27 chr13 56630553 56630845 -63114053 + L2 LINE L2 2987 3309 -4 241 387 57 0 chr13 56631974 56632080 -63112818 - L2 LINE L2 0 3272 3161 475 164 0 0 chr13 56632080 56632175 -63112723 - AluSp/q SINE Alu 0 305 211 1923 141 7 3 chr13 56632436 56632734 -63112164 - AluSx SINE Alu -13 299 1 228 121 0 86 chr13 56632876 56632934 -63111964 + (TG)n Simple_repeat Simple_repeat 2 54 0 205 341 119 49 chr13 56632987 56633213 -63111685 - L2 LINE L2 -454 2860 2619 812 244 0 0 chr13 56633229 56633397 -63111501 + AluJb SINE Alu 122 289 -23 467 360 80 0 chr13 56633521 56633721 -63111177 - MIR SINE MIR -36 226 11 2158 233 38 28 chr13 56634031 56634710 -63110188 + L1M4 LINE L1 4259 4944 -1202 255 125 0 0 chr13 56634710 56634750 -63110148 + (CA)n Simple_repeat Simple_repeat 1 40 0 1233 238 82 12 chr13 56634768 56635141 -63109757 - MLT2B1 LTR ERVL 0 397 5 1096 246 49 20 chr13 56635148 56635538 -63109360 + L1M4 LINE L1 4964 5364 -782 * 7045 31 1 0 chr13 56635536 56636384 -63108514 - L1PA4 LINE L1 -1661 4485 3637 7364 34 5 2 chr13 56636384 56638039 -63106859 + L1PA4 LINE L1 4497 6150 -5 5769 145 79 19 chr13 56638042 56639115 -63105783 - MER57B-int LTR ERV1 -2642 3304 2167 330 143 0 0 chr13 56639111 56639160 -63105738 - MER57B-int LTR ERV1 -4908 2629 2581 * 4536 153 16 5 chr13 56639157 56640032 -63104866 - MER57B-int LTR ERV1 -5060 886 1 2798 139 9 0 chr13 56640032 56640462 -63104436 - MER57B LTR ERV1 0 434 1 678 212 178 0 chr13 56640462 56640703 -63104195 - MLT1A2-int LTR MaLR -970 401 1 1007 228 8 51 chr13 56640703 56640938 -63103960 - MLT1A2 LTR MaLR 0 374 149 1189 233 69 23 chr13 56640938 56641285 -63103613 - MLT1A1 LTR MaLR -2 363 1 1007 228 8 51 chr13 56641285 56641303 -63103595 - MLT1A2 LTR MaLR -225 149 132 6317 222 23 9 chr13 56641799 56643106 -63101792 + L1M1 LINE L1 14 1338 -6227 3563 129 15 26 chr13 56643108 56643758 -63101140 + L1M1 LINE L1 2544 3186 -4379 1928 152 0 0 chr13 56644711 56645007 -63099891 + AluSx SINE Alu 1 296 -16 1974 232 26 9 chr13 56645102 56646120 -63098778 + L1M1 LINE L1 3876 4918 -2647 225 182 0 0 chr13 56646112 56646156 -63098742 + L1 LINE L1 3287 3330 -2816 * 204 40 0 0 chr13 56646629 56646654 -63098244 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 5544 108 21 1 chr13 56646654 56648005 -63096893 - L1PA10 LINE L1 -21 6147 4768 865 71 0 0 chr13 56648005 56648113 -63096785 + L1PA5 LINE L1 6030 6141 -13 22 0 0 0 chr13 56648129 56648151 -63096747 + AT_rich Low_complexity Low_complexity 1 22 0 201 211 0 0 chr13 56648314 56648371 -63096527 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 742 273 83 27 chr13 56648389 56648786 -63096112 + MLT1J2 LTR MaLR 1 436 -10 323 257 46 46 chr13 56651286 56651395 -63093503 + MLT1E1 LTR MaLR 33 141 -513 836 264 110 22 chr13 56651917 56652190 -63092708 - LTR40a LTR ERVL -217 302 6 434 333 107 19 chr13 56652846 56653107 -63091791 - MLT1I LTR MaLR -18 391 108 723 126 105 32 chr13 56653646 56653836 -63091062 - L1MA7 LINE L1 -2 6289 6086 425 255 85 55 chr13 56653836 56654036 -63090862 - L1MC4a LINE L1 -1882 5926 5721 2129 94 6 61 chr13 56654054 56654382 -63090516 + AluSx SINE Alu 1 310 -2 3870 246 71 33 chr13 56654540 56655924 -63088974 - Charlie1a DNA MER1_type 0 1455 20 219 273 202 0 chr13 56657582 56657681 -63087217 - L2 LINE L2 -16 3297 3179 429 323 153 23 chr13 56658074 56658517 -63086381 - L2 LINE L2 -874 2440 1940 2451 218 8 4 chr13 56658729 56659201 -63085697 + MLT2B2 LTR ERVL 2 475 -40 21 0 0 0 chr13 56659414 56659435 -63085463 + AT_rich Low_complexity Low_complexity 1 21 0 9881 32 3 2 chr13 56660582 56662099 -63082799 - L1P1 LINE L1 -458 5697 4178 * 15542 41 0 0 chr13 56662095 56664036 -63080862 + L1P LINE L1 1751 3691 -2455 528 260 25 15 chr13 56664191 56664387 -63080511 - MLT1E-int LTR MaLR -873 498 301 248 297 116 22 chr13 56664371 56664509 -63080389 - MLT1E-int LTR MaLR -1172 199 49 * 1185 293 129 27 chr13 56664558 56665086 -63079812 - MLT1E LTR MaLR -13 562 1 25 0 0 0 chr13 56665498 56665523 -63079375 + AT_rich Low_complexity Low_complexity 1 25 0 279 231 42 63 chr13 56665829 56665972 -63078926 + L1M4 LINE L1 3843 3982 -2164 25 65 0 0 chr13 56666367 56666413 -63078485 + AT_rich Low_complexity Low_complexity 1 46 0 27 49 0 0 chr13 56668017 56668058 -63076840 + AT_rich Low_complexity Low_complexity 1 41 0 245 365 9 0 chr13 56668676 56668783 -63076115 + MLT1-int LTR MaLR 777 884 -487 2324 128 34 3 chr13 56668891 56669244 -63075654 - THE1B LTR MaLR 0 364 1 2812 133 5 7 chr13 56669244 56669672 -63075226 - THE1B-int LTR MaLR 0 1580 1154 1750 142 68 9 chr13 56669672 56669996 -63074902 + MER61A LTR ERV1 1 343 0 2368 174 35 55 chr13 56669996 56670328 -63074570 + MER61A-int LTR ERV1 1 338 -4879 830 102 78 0 chr13 56670328 56670456 -63074442 + MER85 DNA T2_type 2 139 0 2368 174 35 55 chr13 56670456 56670584 -63074314 + MER61A-int LTR ERV1 338 449 -4768 2470 62 3 0 chr13 56670584 56670891 -63074007 - AluY SINE Alu -3 308 1 2368 174 35 55 chr13 56670891 56671008 -63073890 + MER61A-int LTR ERV1 449 567 -4650 * 3184 110 77 6 chr13 56670978 56671498 -63073400 + MER61A-int LTR ERV1 1384 1940 -3277 1089 207 22 4 chr13 56671710 56671942 -63072956 - MER46A DNA MER2_type 0 236 1 1673 216 14 45 chr13 56671960 56672000 -63072898 - MLT2D LTR ERVL 0 414 374 360 43 0 0 chr13 56672000 56672046 -63072852 + (TG)n Simple_repeat Simple_repeat 2 47 0 1673 216 14 45 chr13 56672046 56672432 -63072466 - MLT2D LTR ERVL -40 374 1 2042 210 184 11 chr13 56672432 56672570 -63072328 - ERVL-D LTR ERVL -8 5756 5643 2541 106 57 7 chr13 56672570 56672975 -63071923 + MSTA LTR MaLR 4 428 0 2042 210 184 11 chr13 56672975 56673364 -63071534 - ERVL-D LTR ERVL -121 5643 5138 1042 187 100 79 chr13 56673367 56673532 -63071366 + MLT1A2 LTR MaLR 1 161 -213 1727 168 18 0 chr13 56673532 56673817 -63071081 + AluJb SINE Alu 7 296 -16 1042 187 100 79 chr13 56673817 56674112 -63070786 + MLT1A2 LTR MaLR 161 374 0 1869 205 16 16 chr13 56674115 56674496 -63070402 - ERVL-D LTR ERVL -628 5136 4756 1157 203 13 39 chr13 56674638 56674943 -63069955 + L1MA9 LINE L1 6015 6311 -1 2066 209 92 4 chr13 56677139 56677607 -63067291 + LTR22 LTR ERVK 1 509 0 1120 180 99 123 chr13 56678336 56678741 -63066157 + MSTD LTR MaLR 2 396 0 188 397 17 34 chr13 56678818 56678997 -63065901 + L2 LINE L2 1970 2145 -1169 204 161 48 16 chr13 56679575 56679637 -63065261 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 36 0 0 chr13 56680210 56680238 -63064660 + AT_rich Low_complexity Low_complexity 1 28 0 1913 240 63 25 chr13 56683022 56683497 -63061401 - MLT1D LTR MaLR -12 493 1 229 253 160 0 chr13 56683725 56683800 -63061098 + L1MC4 LINE L1 6616 6702 -1340 269 309 0 12 chr13 56683802 56683886 -63061012 + (TA)n Simple_repeat Simple_repeat 1 83 0 22 80 0 0 chr13 56683913 56683963 -63060935 + AT_rich Low_complexity Low_complexity 1 50 0 1333 241 0 10 chr13 56684234 56684524 -63060374 - AluJo SINE Alu -25 287 1 737 114 73 0 chr13 56686026 56686149 -63058749 + L1MA1 LINE L1 6171 6302 0 444 357 16 44 chr13 56686230 56686412 -63058486 - L3 LINE CR1 -930 647 471 2480 196 58 7 chr13 56686412 56686985 -63057913 - L1 LINE L1 -1624 4522 3921 3988 171 33 14 chr13 56687027 56687907 -63056991 + L1M2 LINE L1 4466 5389 -902 1631 209 9 20 chr13 56687907 56688256 -63056642 - MER7A DNA MER2_type 0 346 4 3988 171 33 14 chr13 56688256 56688694 -63056204 + L1M2 LINE L1 5389 5817 -474 255 330 19 10 chr13 56689457 56689560 -63055338 + L1ME3A LINE L1 1108 1211 -5423 289 303 119 0 chr13 56689878 56689987 -63054911 - MLT1E LTR MaLR -471 122 1 24 0 0 0 chr13 56690061 56690085 -63054813 + AT_rich Low_complexity Low_complexity 1 24 0 2304 135 11 8 chr13 56690251 56690613 -63054285 + THE1B LTR MaLR 2 364 0 5989 143 46 14 chr13 56690614 56691597 -63053301 + THE1B-int LTR MaLR 2 1015 -565 1698 42 14 1 chr13 56691740 56692499 -63052399 - L1PA5 LINE L1 0 6154 5307 * 7835 26 0 1 chr13 56692498 56693435 -63051463 + L1PA5 LINE L1 4359 5294 -852 279 371 61 25 chr13 56693522 56693719 -63051179 + L2 LINE L2 1269 1472 -1842 23 33 0 0 chr13 56693856 56693886 -63051012 + AT_rich Low_complexity Low_complexity 1 30 0 1484 221 0 3 chr13 56693949 56694239 -63050659 + AluJo SINE Alu 5 293 -19 239 266 104 40 chr13 56694290 56694463 -63050435 + L1ME3A LINE L1 1526 1709 -4833 461 167 12 0 chr13 56694617 56694701 -63050197 - AluS SINE Alu -228 85 1 231 305 82 50 chr13 56694709 56695293 -63049605 + L1ME3A LINE L1 5170 5772 -872 1400 281 145 22 chr13 56695387 56695494 -63049404 + L1ME3A LINE L1 5797 5890 -778 1393 188 43 0 chr13 56695494 56695770 -63049128 + L1PB4 LINE L1 5869 6156 0 1400 281 145 22 chr13 56695770 56696421 -63048477 + L1ME3A LINE L1 5890 6648 -20 4374 188 10 5 chr13 56697019 56697886 -63047012 - L1P LINE L1 -1107 5039 4168 * 7297 222 16 14 chr13 56697883 56699601 -63045297 + L1P LINE L1 1729 3449 -2697 1051 217 7 29 chr13 56699707 56699983 -63044915 - MER61-int LTR ERV1 -85 5132 4863 * 10121 106 9 33 chr13 56699975 56702893 -63042005 - MER61-int LTR ERV1 -391 6659 1993 3346 177 11 6 chr13 56702994 56703620 -63041278 + L1P LINE L1 3544 4172 -1974 1355 273 52 47 chr13 56704258 56704964 -63039934 + L1ME3A LINE L1 5461 6170 0 231 279 57 57 chr13 56706530 56706688 -63038210 - L2 LINE L2 -65 3248 3091 1187 231 66 55 chr13 56706693 56707147 -63037751 + MLT1C LTR MaLR 9 467 0 430 333 136 9 chr13 56707469 56707697 -63037201 + MIR SINE MIR 6 262 0 254 28 0 28 chr13 56709334 56709370 -63035528 + (TA)n Simple_repeat Simple_repeat 1 35 0 195 372 0 43 chr13 56709493 56709587 -63035311 + MIR SINE MIR 62 151 -57 22 0 0 0 chr13 56710320 56710342 -63034556 + AT_rich Low_complexity Low_complexity 1 22 0 226 313 149 60 chr13 56711612 56711960 -63032938 + L2 LINE L2 2581 2959 -355 795 314 124 57 chr13 56712921 56713119 -63031779 + L2 LINE L2 1762 1945 -1369 2107 107 0 0 chr13 56713119 56713408 -63031490 - AluSg SINE Alu -21 289 1 795 314 124 57 chr13 56713408 56713958 -63030940 + L2 LINE L2 1945 2560 -754 245 333 29 0 chr13 56714132 56714270 -63030628 + HAL1 LINE L1 1538 1679 -828 374 146 131 46 chr13 56714596 56714726 -63030172 - LTR19A LTR ERV1 -16 470 330 270 293 143 15 chr13 56715970 56716103 -63028795 + MLT1H1 LTR MaLR 125 274 -281 269 254 0 15 chr13 56716286 56716353 -63028545 + L2 LINE L2 2728 2793 -521 29 60 0 0 chr13 56717198 56717248 -63027650 + AT_rich Low_complexity Low_complexity 1 50 0 246 253 0 88 chr13 56717539 56717630 -63027268 - MIR SINE MIR -70 192 110 22 0 0 0 chr13 56717873 56717895 -63027003 + AT_rich Low_complexity Low_complexity 1 22 0 39 60 0 0 chr13 56717976 56718043 -63026855 + AT_rich Low_complexity Low_complexity 1 67 0 270 374 68 14 chr13 56718155 56718302 -63026596 + MIR SINE MIR 8 162 -100 348 283 21 0 chr13 56719947 56720092 -63024806 + L1MC4a LINE L1 5738 5885 -1923 469 360 68 34 chr13 56720605 56720986 -63023912 - MLT1I LTR MaLR -15 394 1 213 277 77 0 chr13 56721124 56721189 -63023709 + MIR SINE MIR 41 110 -152 185 234 31 31 chr13 56722624 56722688 -63022210 - MIR SINE MIR -79 183 120 407 231 101 77 chr13 56722850 56723019 -63021879 - MER20 DNA MER1_type -1 218 46 25 75 0 0 chr13 56723150 56723203 -63021695 + AT_rich Low_complexity Low_complexity 1 53 0 628 272 72 102 chr13 56723866 56724396 -63020502 - L1ME LINE L1 -5547 523 10 25 31 0 0 chr13 56725119 56725151 -63019747 + AT_rich Low_complexity Low_complexity 1 32 0 2034 110 34 3 chr13 56725868 56726159 -63018739 + AluSx SINE Alu 1 300 -12 674 160 14 123 chr13 56726200 56726412 -63018486 - L1MC3 LINE L1 -8 7777 7589 206 309 24 111 chr13 56728166 56728284 -63016614 - MIR SINE MIR -28 234 140 2126 97 28 0 chr13 56728284 56728574 -63016324 + AluSg SINE Alu 1 298 -12 206 309 24 111 chr13 56728574 56728662 -63016236 - MIR SINE MIR -122 140 46 22 0 0 0 chr13 56729486 56729508 -63015390 + AT_rich Low_complexity Low_complexity 1 22 0 2492 66 0 0 chr13 56729928 56730233 -63014665 - AluY SINE Alu -6 305 1 24 32 0 0 chr13 56730887 56730918 -63013980 + AT_rich Low_complexity Low_complexity 1 31 0 12053 96 6 7 chr13 56731840 56734378 -63010520 - L1PA7 LINE L1 -2 6152 3608 237 65 0 0 chr13 56734378 56734409 -63010489 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 2660 152 33 0 chr13 56734924 56735352 -63009546 - MER41-int LTR ERV1 -792 5154 4713 3480 37 5 5 chr13 56735352 56735788 -63009110 - L1P LINE L1 -2045 4101 3666 22 0 0 0 chr13 56736397 56736419 -63008479 + AT_rich Low_complexity Low_complexity 1 22 0 2331 50 40 10 chr13 56736847 56737147 -63007751 + AluY SINE Alu 1 309 -2 441 0 0 0 chr13 56737208 56737257 -63007641 + (CA)n Simple_repeat Simple_repeat 2 50 0 1265 218 24 34 chr13 56739836 56740134 -63004764 + AluJo SINE Alu 1 295 -7 314 272 64 79 chr13 56741152 56741354 -63003544 - L2 LINE L2 -455 2859 2661 29 0 0 0 chr13 56741411 56741440 -63003458 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr13 56741990 56742016 -63002882 + AT_rich Low_complexity Low_complexity 1 26 0 941 167 57 0 chr13 56742476 56742703 -63002195 - L1MA9 LINE L1 -1 6311 6072 1236 243 13 13 chr13 56742704 56743021 -63001877 - L1 LINE L1 -2234 4148 3832 * 2034 249 117 61 chr13 56743012 56743399 -63001499 - L1 LINE L1 -3826 2556 2192 2226 116 0 0 chr13 56743399 56743701 -63001197 + AluSx SINE Alu 3 304 -8 2034 249 117 61 chr13 56743701 56744990 -62999908 - L1 LINE L1 -4190 2192 777 3744 246 28 52 chr13 56745004 56746112 -62998786 + MSTD-int LTR MaLR 561 1730 -5 596 233 52 1 chr13 56746123 56746262 -62998636 + MSTD LTR MaLR 3 162 -212 1026 106 0 7 chr13 56746268 56746410 -62998488 + AluSq/x SINE Alu 1 141 -171 1860 104 7 58 chr13 56746414 56746559 -62998339 + AluSx SINE Alu 2 124 -188 1669 120 117 15 chr13 56746559 56746833 -62998065 + AluSg1 SINE Alu 2 303 -6 1860 104 7 58 chr13 56746833 56746995 -62997903 + AluSx SINE Alu 124 293 -19 724 247 46 0 chr13 56747013 56747187 -62997711 + MSTD LTR MaLR 215 396 0 30 59 0 0 chr13 56747208 56747259 -62997639 + AT_rich Low_complexity Low_complexity 1 51 0 945 266 52 46 chr13 56748662 56749206 -62995692 - L1ME1 LINE L1 -10 6225 5679 * 1939 262 81 41 chr13 56749188 56749288 -62995610 - L1ME1 LINE L1 -3267 2948 2854 2045 127 3 0 chr13 56749288 56749607 -62995291 - AluSp SINE Alu 0 320 1 1939 262 81 41 chr13 56749607 56751547 -62993351 - L1ME1 LINE L1 -3361 2854 855 610 295 47 31 chr13 56751536 56751794 -62993104 - L1ME1 LINE L1 -6097 299 38 * 187 228 175 0 chr13 56751794 56751851 -62993047 - L3 LINE CR1 -893 684 618 238 255 191 0 chr13 56752659 56752800 -62992098 + L1ME3A LINE L1 854 1021 -4887 510 299 40 68 chr13 56752829 56753430 -62991468 + L1ME3A LINE L1 1103 1870 -4737 695 303 100 63 chr13 56753945 56754904 -62989994 + L1ME3A LINE L1 2411 3413 -3013 665 309 112 19 chr13 56755151 56755385 -62989513 + L1ME3A LINE L1 5598 5809 -641 222 37 0 0 chr13 56755385 56755412 -62989486 + (TG)n Simple_repeat Simple_repeat 2 28 0 665 309 112 19 chr13 56755412 56755874 -62989024 + L1ME3A LINE L1 5809 6441 -9 230 224 0 60 chr13 56756139 56756206 -62988692 + GA-rich Low_complexity Low_complexity 2 64 0 23 0 0 0 chr13 56756299 56756322 -62988576 + AT_rich Low_complexity Low_complexity 1 23 0 1753 152 3 37 chr13 56756572 56756894 -62988004 - AluSq SINE Alu -2 311 1 1949 288 44 14 chr13 56757351 56758081 -62986817 + HsTC2 DNA Tc2 2 753 -1145 553 273 53 36 chr13 56758088 56758425 -62986473 + HsTC2 DNA Tc2 1281 1799 -99 5301 124 56 29 chr13 56759180 56760419 -62984479 + L1PB2 LINE L1 4878 6150 -1 1077 147 46 0 chr13 56760601 56760819 -62984079 - L1MA8 LINE L1 -5 6286 6059 207 0 0 0 chr13 56761939 56761962 -62982936 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1197 206 3 87 chr13 56761966 56762276 -62982622 - AluJb SINE Alu -17 285 2 3575 145 0 7 chr13 56763430 56764017 -62980881 - L1P LINE L1 -869 5277 4695 5580 100 40 1 chr13 56764048 56764848 -62980050 + L1PA10 LINE L1 5338 6168 0 23 0 0 0 chr13 56765055 56765078 -62979820 + AT_rich Low_complexity Low_complexity 1 23 0 259 250 0 56 chr13 56765078 56765238 -62979660 + A-rich Low_complexity Low_complexity 4 154 0 480 339 94 51 chr13 56765260 56765868 -62979030 + HAL1b LINE L1 1 634 -714 1864 120 0 28 chr13 56765906 56766189 -62978709 + AluSx SINE Alu 1 275 -37 594 0 0 0 chr13 56766196 56766262 -62978636 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 6578 194 43 18 chr13 56766262 56767986 -62976912 - L1M1 LINE L1 -743 6822 5183 * 12237 174 57 31 chr13 56767982 56770139 -62974759 - L1M1 LINE L1 -3821 3744 1362 620 62 0 0 chr13 56770139 56770219 -62974679 + L1PA5 LINE L1 6075 6154 0 12237 174 57 31 chr13 56770219 56771602 -62973296 - L1M1 LINE L1 -6203 1362 17 186 224 0 0 chr13 56771662 56771711 -62973187 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 33 0 0 chr13 56771806 56771836 -62973062 + AT_rich Low_complexity Low_complexity 1 30 0 235 419 29 12 chr13 56774212 56774384 -62970514 - MIR SINE MIR -26 236 62 1594 83 9 9 chr13 56774511 56774739 -62970159 + L1PA7 LINE L1 5882 6109 -45 331 321 121 37 chr13 56774758 56774948 -62969950 - MIR SINE MIR -56 206 1 453 170 89 18 chr13 56776502 56776614 -62968284 + L1MA8 LINE L1 6166 6285 -6 232 220 0 30 chr13 56776618 56776718 -62968180 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 34 55 0 0 chr13 56776759 56776814 -62968084 + AT_rich Low_complexity Low_complexity 1 55 0 221 198 57 19 chr13 56776869 56776975 -62967923 + (TA)n Simple_repeat Simple_repeat 1 110 0 * 294 195 46 46 chr13 56776925 56777099 -62967799 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 319 151 0 47 chr13 56777197 56777283 -62967615 + (TA)n Simple_repeat Simple_repeat 1 82 0 205 190 17 35 chr13 56777359 56777417 -62967481 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 30 45 0 0 chr13 56778396 56778440 -62966458 + AT_rich Low_complexity Low_complexity 1 44 0 776 194 10 135 chr13 56780473 56780761 -62964137 + MSTB2 LTR MaLR 2 259 -179 2474 50 0 0 chr13 56780834 56781133 -62963765 + AluY SINE Alu 1 299 -12 470 264 68 0 chr13 56781137 56781285 -62963613 + MSTB2 LTR MaLR 300 457 0 2230 120 0 3 chr13 56781643 56781951 -62962947 + AluSq SINE Alu 1 307 -6 560 321 60 45 chr13 56782276 56782825 -62962073 - MERVL LTR ERVL -3070 2415 1859 318 350 56 40 chr13 56783001 56783375 -62961523 - MERVL LTR ERVL -3418 1578 1199 313 339 108 36 chr13 56783721 56784197 -62960701 - L1ME LINE L1 -298 5823 5317 857 297 87 40 chr13 56784247 56785320 -62959578 + L1MDa LINE L1 1004 2126 -4414 228 220 0 0 chr13 56785365 56785424 -62959474 - LTR66 LTR ERVL -169 441 383 2449 58 0 3 chr13 56785611 56785923 -62958975 + AluY SINE Alu 1 311 0 426 20 0 0 chr13 56786260 56786311 -62958587 + (CA)n Simple_repeat Simple_repeat 2 52 0 356 326 52 46 chr13 56787662 56788006 -62956892 + MLT1I LTR MaLR 76 387 -22 229 330 23 11 chr13 56789719 56789807 -62955091 + L2 LINE L2 3191 3279 -34 225 154 0 0 chr13 56789851 56789890 -62955008 + A-rich Low_complexity Low_complexity 1 39 0 1882 117 3 0 chr13 56790380 56790662 -62954236 - L1PA7 LINE L1 -1 6153 5871 2274 204 38 106 chr13 56790664 56791422 -62953476 + L1MC3 LINE L1 6874 7580 -205 915 186 15 10 chr13 56791469 56791673 -62953225 + AluJo SINE Alu 1 205 -107 364 123 0 2 chr13 56791724 56791803 -62953095 + AluS SINE Alu 221 281 -20 306 289 69 40 chr13 56793368 56793541 -62951357 + HAL1 LINE L1 1426 1603 -904 398 276 64 0 chr13 56794261 56794417 -62950481 - L1M4 LINE L1 -2055 4091 3926 1238 217 32 11 chr13 56795142 56795302 -62949596 - AluJo SINE Alu -29 283 128 483 33 0 0 chr13 56795302 56795363 -62949535 + (TATG)n Simple_repeat Simple_repeat 2 62 0 1797 151 21 0 chr13 56795363 56795642 -62949256 - AluSx SINE Alu -27 285 1 1238 217 32 11 chr13 56795642 56795757 -62949141 - AluJo SINE Alu -183 129 1 21 0 0 0 chr13 56795822 56795843 -62949055 + AT_rich Low_complexity Low_complexity 1 21 0 1971 128 104 3 chr13 56795891 56795941 -62948957 - L1PA12 LINE L1 -180 5988 5939 848 258 119 21 chr13 56795941 56796278 -62948620 - L1MA4A LINE L1 -365 5938 5569 303 298 40 33 chr13 56796279 56796430 -62948468 - L1MA4A LINE L1 -758 5426 5275 407 214 34 39 chr13 56797153 56797314 -62947584 - L1M LINE L1 -738 5426 5275 568 141 20 0 chr13 56797425 56797524 -62947374 - AluY SINE Alu 0 311 211 1813 100 30 40 chr13 56799454 56799754 -62945144 + AluSc SINE Alu 1 297 -12 1840 184 8 52 chr13 56799828 56800229 -62944669 + MLT1B LTR MaLR 8 390 0 214 172 62 16 chr13 56801287 56801351 -62943547 + GA-rich Low_complexity Low_complexity 4 70 0 5812 11 0 0 chr13 56802120 56802776 -62942122 - L1HS LINE L1 0 6155 5500 3522 20 0 0 chr13 56802767 56803304 -62941594 + L1P1 LINE L1 4963 5499 -656 * 1902 152 7 3 chr13 56804091 56804393 -62940505 + AluSx SINE Alu 1 303 -9 29 0 0 0 chr13 56804738 56804767 -62940131 + AT_rich Low_complexity Low_complexity 1 29 0 5088 146 24 8 chr13 56805518 56806396 -62938502 + L1PB4 LINE L1 5254 6145 -11 399 238 75 41 chr13 56806401 56806695 -62938203 + L1ME2 LINE L1 2739 3042 -3104 373 240 104 77 chr13 56806709 56806892 -62938006 + L1ME2 LINE L1 5477 5664 -500 404 241 23 6 chr13 56806918 56807092 -62937806 + GA-rich Low_complexity Low_complexity 4 180 0 1028 269 69 29 chr13 56807100 56807554 -62937344 + L1ME2 LINE L1 5668 6144 -20 1734 107 0 16 chr13 56807651 56807904 -62936994 + AluSx SINE Alu 1 249 -63 186 209 0 0 chr13 56807916 56807959 -62936939 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 22 56 0 0 chr13 56807959 56807995 -62936903 + AT_rich Low_complexity Low_complexity 1 36 0 232 192 0 55 chr13 56809537 56809610 -62935288 - L1MCa LINE L1 -4363 2063 1995 222 191 0 0 chr13 56809628 56809675 -62935223 + (TA)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr13 56810198 56810228 -62934670 + AT_rich Low_complexity Low_complexity 1 30 0 986 139 53 10 chr13 56810228 56810437 -62934461 - L1MA7 LINE L1 -3 6288 6071 30333 117 13 55 chr13 56812443 56818864 -62926034 + L1PA7 LINE L1 12 6150 -4 22 0 0 0 chr13 56819061 56819083 -62925815 + AT_rich Low_complexity Low_complexity 1 22 0 757 172 18 29 chr13 56819746 56819931 -62924967 + L1MA8 LINE L1 5851 6044 -256 189 0 0 0 chr13 56821211 56821232 -62923666 + (A)n Simple_repeat Simple_repeat 1 21 0 1426 188 51 21 chr13 56821565 56821900 -62922998 - L1MA8 LINE L1 -4 6287 5943 22 0 0 0 chr13 56822124 56822146 -62922752 + AT_rich Low_complexity Low_complexity 1 22 0 605 249 78 74 chr13 56823632 56823889 -62921009 - HERV16 LTR ERVL -3060 1936 1679 1803 201 67 12 chr13 56824356 56824758 -62920140 - MSTB LTR MaLR -2 424 1 2421 121 28 25 chr13 56824808 56825171 -62919727 + THE1B LTR MaLR 1 364 0 495 344 26 5 chr13 56825201 56825396 -62919502 + LTR16A LTR ERVL 237 435 -15 205 337 82 0 chr13 56825687 56825785 -62919113 + MIR SINE MIR 107 212 -50 198 143 0 0 chr13 56826103 56826138 -62918760 + (CA)n Simple_repeat Simple_repeat 2 36 0 905 127 28 9 chr13 56826146 56826468 -62918430 + (TAGA)n Simple_repeat Simple_repeat 3 329 0 3289 149 47 13 chr13 56826706 56827340 -62917558 + L1MC1 LINE L1 5576 6333 0 788 230 14 37 chr13 56827376 56827593 -62917305 - MER58C DNA MER1_type 0 215 4 24 32 0 0 chr13 56828200 56828231 -62916667 + AT_rich Low_complexity Low_complexity 1 31 0 1227 224 97 3 chr13 56829561 56829923 -62914975 + L1MC3 LINE L1 7185 7580 -205 943 191 15 10 chr13 56829970 56830174 -62914724 + AluJo SINE Alu 1 205 -107 383 123 0 2 chr13 56830226 56830305 -62914593 + AluS SINE Alu 222 282 -20 738 276 6 73 chr13 56832281 56832596 -62912302 - HAL1 LINE L1 -823 1684 1391 454 282 37 9 chr13 56832609 56832825 -62912073 - HAL1 LINE L1 -1305 1202 981 357 282 43 25 chr13 56834175 56834338 -62910560 - L1M4 LINE L1 -2057 4089 3924 641 243 0 0 chr13 56835044 56835180 -62909718 - AluJb SINE Alu -29 283 148 420 189 63 11 chr13 56835204 56835334 -62909564 - AluSg/x SINE Alu 0 318 184 1038 135 0 116 chr13 56835335 56835542 -62909356 + AluSq SINE Alu 114 296 -17 633 182 18 87 chr13 56835647 56835854 -62909044 + L1MC3 LINE L1 6801 6957 -828 2437 244 44 3 chr13 56835899 56836494 -62908404 + L1MC3 LINE L1 6962 7580 -205 943 191 15 10 chr13 56836541 56836745 -62908153 + AluJo SINE Alu 1 205 -107 383 123 0 2 chr13 56836797 56836876 -62908022 + AluS SINE Alu 221 281 -20 768 277 6 70 chr13 56838852 56839166 -62905732 - HAL1 LINE L1 -823 1684 1391 454 282 37 9 chr13 56839179 56839395 -62905503 - HAL1 LINE L1 -1305 1202 981 357 282 43 25 chr13 56840749 56840912 -62903986 - L1M4 LINE L1 -2057 4089 3924 641 243 0 0 chr13 56841618 56841754 -62903144 - AluJb SINE Alu -29 283 148 420 189 63 11 chr13 56841778 56841908 -62902990 - AluSg/x SINE Alu 0 316 182 1038 135 0 116 chr13 56841909 56842116 -62902782 + AluSq SINE Alu 114 296 -17 633 178 15 86 chr13 56842224 56842428 -62902470 + L1MC3 LINE L1 6782 6957 -828 2437 244 44 3 chr13 56842473 56843068 -62901830 + L1MC3 LINE L1 6962 7580 -205 1047 166 22 122 chr13 56843115 56843435 -62901463 + AluJo SINE Alu 1 288 -14 768 277 6 70 chr13 56844959 56845273 -62899625 - HAL1 LINE L1 -823 1684 1391 407 292 37 9 chr13 56845286 56845502 -62899396 - HAL1 LINE L1 -1305 1202 981 357 282 43 25 chr13 56846853 56847016 -62897882 - L1M4 LINE L1 -2057 4089 3924 641 243 0 0 chr13 56847722 56847858 -62897040 - AluJb SINE Alu -29 283 148 420 189 63 11 chr13 56847882 56848012 -62896886 - AluSg/x SINE Alu 0 318 184 1038 135 0 116 chr13 56848013 56848220 -62896678 + AluSq SINE Alu 114 296 -17 633 178 15 86 chr13 56848328 56848532 -62896366 + L1MC3 LINE L1 6782 6957 -828 2437 244 44 3 chr13 56848577 56849172 -62895726 + L1MC3 LINE L1 6962 7580 -205 1007 177 10 100 chr13 56849219 56849529 -62895369 + AluJo SINE Alu 1 282 -30 317 289 69 40 chr13 56851112 56851285 -62893613 + HAL1 LINE L1 1426 1603 -904 369 274 78 6 chr13 56852005 56852184 -62892714 - L1M4 LINE L1 -2055 4091 3900 1231 214 32 25 chr13 56852886 56853050 -62891848 - AluJo SINE Alu -29 283 122 447 35 0 0 chr13 56853050 56853107 -62891791 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1843 151 21 0 chr13 56853107 56853386 -62891512 - AluSx SINE Alu -27 285 1 1231 214 32 25 chr13 56853386 56853501 -62891397 - AluJo SINE Alu -189 123 1 21 0 0 0 chr13 56853566 56853587 -62891311 + AT_rich Low_complexity Low_complexity 1 21 0 2019 125 104 3 chr13 56853635 56853685 -62891213 - L1PA12 LINE L1 -180 5988 5939 859 255 119 21 chr13 56853685 56854022 -62890876 - L1MA4A LINE L1 -365 5938 5569 438 222 34 35 chr13 56854897 56855070 -62889828 - L1MA4A LINE L1 -738 5426 5260 2154 128 10 0 chr13 56855169 56855475 -62889423 - AluY SINE Alu 0 311 3 1935 173 0 0 chr13 56855481 56855793 -62889105 - AluSx SINE Alu 0 312 1 4931 203 73 31 chr13 56855844 56857070 -62887828 - MER52C LTR ERV1 0 1278 2 1584 144 0 4 chr13 56857093 56857329 -62887569 - MER52C-int LTR ERV1 -2 7089 6855 10369 137 31 21 chr13 56857340 56858997 -62885901 - MER52C-int LTR ERV1 -354 6737 5064 * 16468 145 8 5 chr13 56858993 56862023 -62882875 - MER52-int LTR ERV1 -3817 3274 152 231 274 0 0 chr13 56862027 56862078 -62882820 + CT-rich Low_complexity Low_complexity 1 51 0 888 237 16 5 chr13 56862166 56862356 -62882542 - MER58A DNA MER1_type -30 194 3 314 45 23 0 chr13 56862365 56862409 -62882489 + (TC)n Simple_repeat Simple_repeat 1 45 0 229 383 90 22 chr13 56862475 56863204 -62881694 + L2 LINE L2 2241 3017 -255 1062 184 17 0 chr13 56863473 56863652 -62881246 + AluJb SINE Alu 112 293 -19 29 47 0 0 chr13 56863731 56863774 -62881124 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr13 56864428 56864469 -62880429 + AT_rich Low_complexity Low_complexity 1 41 0 304 290 151 58 chr13 56865527 56865872 -62879026 - L2 LINE L2 -3 3310 2934 202 194 32 0 chr13 56865882 56865944 -62878954 + (TTA)n Simple_repeat Simple_repeat 2 65 0 21 36 0 0 chr13 56866557 56866585 -62878313 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 56868533 56868555 -62876343 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 56868993 56869016 -62875882 + AT_rich Low_complexity Low_complexity 1 23 0 472 288 135 27 chr13 56869901 56870463 -62874435 + MER20B DNA MER1_type 85 707 -76 867 271 103 58 chr13 56870471 56870918 -62873980 + MLT1C LTR MaLR 1 467 0 26 0 0 0 chr13 56871006 56871032 -62873866 + AT_rich Low_complexity Low_complexity 1 26 0 13775 192 53 11 chr13 56871076 56876028 -62868870 - L1MA3 LINE L1 -336 7388 2221 5029 197 40 14 chr13 56876049 56877040 -62867858 - L1MA3 LINE L1 -6536 1029 13 21 0 0 0 chr13 56877521 56877542 -62867356 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr13 56878809 56878835 -62866063 + AT_rich Low_complexity Low_complexity 1 26 0 282 255 82 125 chr13 56878849 56878888 -62866010 - MIR SINE MIR -42 220 181 609 233 59 78 chr13 56878888 56879107 -62865791 + MER20 DNA MER1_type 1 215 -4 282 255 82 125 chr13 56879107 56879251 -62865647 - MIR SINE MIR -81 181 45 878 281 51 92 chr13 56879310 56879875 -62865023 + MLT1F LTR MaLR 1 542 0 183 268 24 0 chr13 56880604 56880645 -62864253 + L2 LINE L2 3220 3261 -11 322 167 24 12 chr13 56880728 56880812 -62864086 + L1MA4 LINE L1 6036 6120 -180 * 431 205 30 0 chr13 56880809 56880917 -62863981 + L1MA4A LINE L1 6179 6297 -3 324 306 67 50 chr13 56880996 56881176 -62863722 - L2 LINE L2 -8 3305 3123 2824 3 0 0 chr13 56882442 56882750 -62862148 - AluY SINE Alu -3 308 1 21 0 0 0 chr13 56883337 56883358 -62861540 + AT_rich Low_complexity Low_complexity 1 21 0 231 362 102 23 chr13 56883933 56884110 -62860788 - L2 LINE L2 -832 2482 2292 194 304 35 61 chr13 56884731 56884846 -62860052 + MER5B DNA MER1_type 7 118 -60 26 30 0 0 chr13 56884964 56884997 -62859901 + AT_rich Low_complexity Low_complexity 1 33 0 2182 114 3 3 chr13 56885342 56885649 -62859249 + AluSg SINE Alu 1 307 -3 245 204 20 0 chr13 56885882 56885931 -62858967 + MIR SINE MIR 95 144 -64 602 25 0 25 chr13 56886179 56886258 -62858640 - L1PA8 LINE L1 -5 6167 6091 281 212 182 0 chr13 56886871 56886937 -62857961 - L2 LINE L2 -1 3312 3235 30 0 0 0 chr13 56887046 56887076 -62857822 + AT_rich Low_complexity Low_complexity 1 30 0 275 0 0 28 chr13 56887740 56887776 -62857122 + (CA)n Simple_repeat Simple_repeat 2 36 0 307 235 71 20 chr13 56888179 56888277 -62856621 + L1MC4 LINE L1 6601 6703 -1339 543 16 0 0 chr13 56888346 56888410 -62856488 + (TC)n Simple_repeat Simple_repeat 2 65 0 207 0 0 0 chr13 56888409 56888432 -62856466 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 278 354 92 35 chr13 56888591 56888851 -62856047 + L3 LINE CR1 1203 1477 -100 2350 20 0 0 chr13 56889058 56889351 -62855547 - L1P LINE L1 -2866 3280 2988 25 31 0 0 chr13 56889459 56889491 -62855407 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr13 56890237 56890265 -62854633 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr13 56890314 56890362 -62854536 + AT_rich Low_complexity Low_complexity 1 48 0 1141 169 54 14 chr13 56890518 56890797 -62854101 + L1MA7 LINE L1 5639 5938 -230 1936 186 12 7 chr13 56890836 56891240 -62853658 + L1MA6 LINE L1 5894 6299 -1 1823 100 30 40 chr13 56893524 56893825 -62851073 + AluSc SINE Alu 1 298 -11 1819 187 8 52 chr13 56893899 56894300 -62850598 + MLT1B LTR MaLR 8 390 0 214 172 62 16 chr13 56895358 56895422 -62849476 + GA-rich Low_complexity Low_complexity 4 70 0 5812 11 0 0 chr13 56896190 56896846 -62848052 - L1HS LINE L1 0 6155 5500 3522 20 0 0 chr13 56896837 56897374 -62847524 + L1P1 LINE L1 4963 5499 -656 * 1918 149 7 3 chr13 56898164 56898466 -62846432 + AluSx SINE Alu 1 303 -9 29 0 0 0 chr13 56898811 56898840 -62846058 + AT_rich Low_complexity Low_complexity 1 29 0 5094 146 23 9 chr13 56899591 56900471 -62844427 + L1PB4 LINE L1 5254 6276 -22 392 241 75 41 chr13 56900474 56900768 -62844130 + L1ME2 LINE L1 2739 3042 -3104 373 240 104 77 chr13 56900782 56900965 -62843933 + L1ME2 LINE L1 5477 5664 -500 404 241 23 6 chr13 56900991 56901165 -62843733 + GA-rich Low_complexity Low_complexity 4 180 0 1044 274 65 25 chr13 56901173 56901627 -62843271 + L1ME2 LINE L1 5668 6144 -20 1734 107 0 16 chr13 56901724 56901977 -62842921 + AluSx SINE Alu 1 249 -63 186 209 0 0 chr13 56901989 56902032 -62842866 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 22 56 0 0 chr13 56902032 56902068 -62842830 + AT_rich Low_complexity Low_complexity 1 36 0 232 192 0 55 chr13 56903610 56903683 -62841215 - L1MCa LINE L1 -4363 2063 1995 222 191 0 0 chr13 56903701 56903748 -62841150 + (TA)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr13 56904271 56904301 -62840597 + AT_rich Low_complexity Low_complexity 1 30 0 986 139 53 10 chr13 56904301 56904510 -62840388 - L1MA7 LINE L1 -3 6288 6071 30440 117 13 54 chr13 56906515 56912926 -62831972 + L1PA7 LINE L1 12 6150 -4 22 0 0 0 chr13 56913123 56913145 -62831753 + AT_rich Low_complexity Low_complexity 1 22 0 757 172 18 29 chr13 56913808 56913993 -62830905 + L1MA8 LINE L1 5851 6044 -256 23 0 0 0 chr13 56915270 56915293 -62829605 + AT_rich Low_complexity Low_complexity 1 23 0 1412 188 51 21 chr13 56915622 56915957 -62828941 - L1MA8 LINE L1 -4 6287 5943 22 0 0 0 chr13 56916181 56916203 -62828695 + AT_rich Low_complexity Low_complexity 1 22 0 625 269 66 59 chr13 56917710 56917966 -62826932 - HERV16 LTR ERVL -3060 1936 1679 1795 201 67 12 chr13 56918433 56918835 -62826063 - MSTB LTR MaLR -2 424 1 2365 124 28 25 chr13 56918885 56919248 -62825650 + THE1B LTR MaLR 1 364 0 500 340 35 5 chr13 56919273 56919473 -62825425 + LTR16A LTR ERVL 230 435 -15 252 337 82 0 chr13 56919764 56919862 -62825036 + MIR SINE MIR 107 212 -50 198 143 0 0 chr13 56920180 56920215 -62824683 + (CA)n Simple_repeat Simple_repeat 2 36 0 887 116 28 16 chr13 56920223 56920541 -62824357 + (TAGA)n Simple_repeat Simple_repeat 3 323 0 3241 151 44 13 chr13 56920779 56921406 -62823492 + L1MC1 LINE L1 5576 6324 -9 775 230 14 37 chr13 56921449 56921666 -62823232 - MER58C DNA MER1_type 0 215 4 24 32 0 0 chr13 56922273 56922304 -62822594 + AT_rich Low_complexity Low_complexity 1 31 0 1863 170 28 35 chr13 56924235 56924634 -62820264 + L1MA6 LINE L1 5905 6300 0 250 247 52 31 chr13 56925395 56925492 -62819406 - L1ME3A LINE L1 -229 5941 5843 43 0 0 0 chr13 56925495 56925538 -62819360 + AT_rich Low_complexity Low_complexity 1 43 0 243 291 43 21 chr13 56925669 56925810 -62819088 - HAL1 LINE L1 -757 1750 1607 4715 173 8 33 chr13 56925815 56927131 -62817767 + L1PB4 LINE L1 4864 6154 -2 505 282 141 44 chr13 56927140 56927623 -62817275 - HAL1 LINE L1 -917 1590 1012 213 65 0 0 chr13 56927623 56927654 -62817244 + (TTG)n Simple_repeat Simple_repeat 2 32 0 505 282 141 44 chr13 56927654 56927893 -62817005 - HAL1 LINE L1 -1495 1012 798 22 56 0 0 chr13 56928888 56928924 -62815974 + AT_rich Low_complexity Low_complexity 1 36 0 446 322 109 17 chr13 56930830 56931069 -62813829 - MIR SINE MIR 0 262 2 455 189 0 0 chr13 56932383 56932457 -62812441 + AluS SINE Alu 1 74 -239 1370 80 0 0 chr13 56933975 56934150 -62810748 + AluSp SINE Alu 139 313 0 344 161 0 0 chr13 57034687 57034749 -62710149 + L1MA2 LINE L1 6139 6200 -104 307 309 37 15 chr13 57035160 57035296 -62709602 + L2 LINE L2 2313 2451 -863 * 938 332 55 23 chr13 57035294 57035767 -62709131 + L2 LINE L2 2821 3308 -5 23 0 0 0 chr13 57036417 57036440 -62708458 + AT_rich Low_complexity Low_complexity 1 23 0 257 187 13 0 chr13 57037989 57038064 -62706834 + GA-rich Low_complexity Low_complexity 1 76 0 939 147 68 0 chr13 57038109 57038299 -62706599 + L1MA9 LINE L1 6105 6307 -5 7796 19 0 0 chr13 57038610 57039620 -62705278 + L1PA3 LINE L1 5146 6155 0 2808 16 0 0 chr13 57040300 57040618 -62704280 + AluYb8 SINE Alu 1 318 0 224 404 80 4 chr13 57040936 57041161 -62703737 - MIR SINE MIR 0 262 21 22 35 0 0 chr13 57042197 57042226 -62702672 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr13 57042802 57042824 -62702074 + (T)n Simple_repeat Simple_repeat 1 22 0 1776 219 42 7 chr13 57044243 57044299 -62700599 - L1 LINE L1 -1294 4852 4799 1864 142 0 0 chr13 57044299 57044567 -62700331 - AluSx SINE Alu -8 304 37 1776 219 42 7 chr13 57044567 57044939 -62699959 - L1 LINE L1 -1347 4799 4409 279 272 0 0 chr13 57044957 57045049 -62699849 + (TA)n Simple_repeat Simple_repeat 2 93 0 306 0 0 0 chr13 57045049 57045083 -62699815 + (CA)n Simple_repeat Simple_repeat 2 35 0 2001 158 11 0 chr13 57045089 57045443 -62699455 + L1PB4 LINE L1 5799 6156 0 22 0 0 0 chr13 57045537 57045559 -62699339 + AT_rich Low_complexity Low_complexity 1 22 0 541 276 151 53 chr13 57045696 57046284 -62698614 - HAL1 LINE L1 -330 2177 1532 30 59 0 0 chr13 57046344 57046395 -62698503 + AT_rich Low_complexity Low_complexity 1 51 0 311 289 31 0 chr13 57046911 57047008 -62697890 + L1MC3 LINE L1 6570 6669 -1116 32 67 0 0 chr13 57047056 57047116 -62697782 + AT_rich Low_complexity Low_complexity 1 60 0 358 187 77 22 chr13 57047209 57047300 -62697598 + MER53 DNA DNA 1 96 -93 340 292 21 0 chr13 57047576 57047672 -62697226 + MIR SINE MIR 41 138 -124 493 290 0 0 chr13 57047726 57047857 -62697041 + FLAM_C SINE Alu 2 132 -1 196 391 70 37 chr13 57047950 57048193 -62696705 + L3 LINE CR1 176 426 -1151 22 0 0 0 chr13 57049238 57049260 -62695638 + AT_rich Low_complexity Low_complexity 1 22 0 1192 195 7 39 chr13 57049558 57049865 -62695033 - L1MA7 LINE L1 -23 6268 5972 189 171 0 0 chr13 57050432 57050467 -62694431 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 24 0 24 chr13 57051103 57051128 -62693770 + AT_rich Low_complexity Low_complexity 1 26 -15 5996 103 7 6 chr13 57051128 57052752 -62692146 - L1PA11 LINE L1 -11 6163 4522 24 24 0 24 chr13 57052752 57052768 -62692130 + AT_rich Low_complexity Low_complexity 26 41 0 1759 149 0 11 chr13 57052814 57053083 -62691815 + AluSq SINE Alu 1 266 -47 1448 101 25 0 chr13 57053399 57053632 -62691266 + AluSg/x SINE Alu 79 316 0 252 0 0 0 chr13 57053670 57053698 -62691200 + (A)n Simple_repeat Simple_repeat 1 28 0 280 326 7 7 chr13 57054636 57054771 -62690127 - L1MEc LINE L1 -3345 3037 2903 216 0 0 0 chr13 57054950 57054974 -62689924 + (A)n Simple_repeat Simple_repeat 1 24 0 404 301 99 62 chr13 57054981 57055537 -62689361 - L1MEc LINE L1 -3673 2709 2129 431 298 129 44 chr13 57055725 57056111 -62688787 - L1MEc LINE L1 -4693 1870 1452 352 338 80 44 chr13 57056326 57056551 -62688347 - L1MEc LINE L1 -5300 1072 840 282 229 0 0 chr13 57056985 57057055 -62687843 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1498 110 0 5 chr13 57057086 57057295 -62687603 - AluSg/x SINE Alu -12 300 93 195 129 0 0 chr13 57057395 57057426 -62687472 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 1240 241 68 85 chr13 57057631 57058520 -62686378 - LTR28 LTR ERV1 0 1020 1 21 57 0 0 chr13 57058535 57058570 -62686328 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr13 57059713 57059741 -62685157 + AT_rich Low_complexity Low_complexity 1 28 0 189 188 0 43 chr13 57060040 57060109 -62684789 + GA-rich Low_complexity Low_complexity 3 68 0 21 0 0 0 chr13 57060554 57060575 -62684323 + AT_rich Low_complexity Low_complexity 1 21 0 1989 117 0 4 chr13 57060754 57061055 -62683843 - AluSc SINE Alu 0 302 3 25 31 0 0 chr13 57061124 57061156 -62683742 + AT_rich Low_complexity Low_complexity 1 32 0 30 45 0 0 chr13 57061541 57061585 -62683313 + AT_rich Low_complexity Low_complexity 1 44 0 225 94 0 0 chr13 57061831 57061863 -62683035 + (TTATA)n Simple_repeat Simple_repeat 1 32 0 34 84 0 0 chr13 57061910 57061993 -62682905 + AT_rich Low_complexity Low_complexity 1 83 0 23 0 0 0 chr13 57063246 57063269 -62681629 + AT_rich Low_complexity Low_complexity 1 23 0 25 90 0 0 chr13 57064510 57064577 -62680321 + AT_rich Low_complexity Low_complexity 1 67 0 797 241 49 83 chr13 57064674 57065060 -62679838 + MLT1A2 LTR MaLR 2 374 0 288 250 193 0 chr13 57066064 57066152 -62678746 + L2 LINE L2 3160 3264 -8 21 0 0 0 chr13 57067139 57067160 -62677738 + AT_rich Low_complexity Low_complexity 1 21 0 236 337 50 0 chr13 57067473 57067574 -62677324 + L2 LINE L2 3196 3301 -12 484 255 42 50 chr13 57068154 57068393 -62676505 + L1MC5 LINE L1 7249 7371 -437 188 111 28 0 chr13 57068559 57068595 -62676303 + (TA)n Simple_repeat Simple_repeat 1 37 0 3722 114 4 5 chr13 57068601 57069309 -62675589 - L1M1 LINE L1 -513 5789 5082 466 266 130 45 chr13 57069489 57069797 -62675101 - L1ME3A LINE L1 -182 5988 5655 24 0 0 0 chr13 57070224 57070248 -62674650 + AT_rich Low_complexity Low_complexity 1 24 0 35 41 0 0 chr13 57070268 57070317 -62674581 + AT_rich Low_complexity Low_complexity 1 49 0 346 88 16 83 chr13 57070317 57070510 -62674388 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 251 340 119 37 chr13 57070729 57070827 -62674071 + L2 LINE L2 2109 2198 -1116 429 36 0 0 chr13 57070827 57070882 -62674016 + (TC)n Simple_repeat Simple_repeat 2 56 0 251 340 119 37 chr13 57070882 57071027 -62673871 + L2 LINE L2 2198 2372 -942 186 377 35 26 chr13 57071884 57071998 -62672900 - L2 LINE L2 -253 3019 2905 1301 159 60 8 chr13 57072039 57072290 -62672608 + MER21A LTR ERV1 1 264 -667 2527 197 77 13 chr13 57072296 57072818 -62672080 + MER21A LTR ERV1 377 931 0 225 397 65 32 chr13 57073215 57073719 -62671179 - L2 LINE L2 -904 2410 1890 800 186 39 10 chr13 57073747 57073950 -62670948 + L1M2 LINE L1 5570 5779 -395 257 351 79 26 chr13 57074108 57074222 -62670676 + L2 LINE L2 3136 3255 -17 5090 185 35 20 chr13 57074296 57074773 -62670125 + L1MA6 LINE L1 4823 5291 -1009 411 21 0 0 chr13 57074773 57074821 -62670077 + (CAT)n Simple_repeat Simple_repeat 2 49 0 5090 185 35 20 chr13 57074821 57075805 -62669093 + L1MA6 LINE L1 5291 6295 -5 23 33 0 0 chr13 57076275 57076305 -62668593 + AT_rich Low_complexity Low_complexity 1 30 0 1388 198 41 4 chr13 57077289 57077557 -62667341 - AluJb SINE Alu -30 282 5 259 287 35 35 chr13 57078280 57078367 -62666531 - L2 LINE L2 -7 3306 3220 964 196 22 6 chr13 57078428 57078607 -62666291 + MER5A DNA MER1_type 1 182 -7 2273 207 26 91 chr13 57079031 57079770 -62665128 + LTR8 LTR ERV1 1 691 0 1886 188 21 8 chr13 57079828 57080212 -62664686 + L1PA16 LINE L1 5769 6157 -9 39 22 0 0 chr13 57080212 57080258 -62664640 + AT_rich Low_complexity Low_complexity 1 46 0 290 235 121 23 chr13 57080312 57080444 -62664454 + L1ME3A LINE L1 5398 5542 -622 1397 254 26 20 chr13 57080525 57080867 -62664031 + Tigger7 DNA MER2_type 1 344 -2143 738 159 58 14 chr13 57080862 57081000 -62663898 + Tigger7 DNA MER2_type 2339 2482 -5 * 377 317 17 0 chr13 57081005 57081125 -62663773 + L1ME3A LINE L1 5630 5751 -419 221 119 24 0 chr13 57081156 57081198 -62663700 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 2055 191 84 71 chr13 57081198 57081731 -62663167 - MLT2B3 LTR ERVL -19 515 1 1125 292 44 12 chr13 57081731 57082017 -62662881 + L1ME3A LINE L1 5748 6052 -118 3022 166 38 7 chr13 57082017 57082591 -62662307 + LTR49 LTR ERV1 1 592 -3 1125 292 44 12 chr13 57082591 57082712 -62662186 + L1ME3A LINE L1 6052 6168 -2 24 67 0 0 chr13 57082826 57082871 -62662027 + AT_rich Low_complexity Low_complexity 1 45 0 832 240 34 10 chr13 57082964 57083168 -62661730 - MER20 DNA MER1_type 0 219 11 703 322 130 28 chr13 57083260 57083720 -62661178 - L2 LINE L2 0 3313 2807 226 300 152 46 chr13 57084326 57084589 -62660309 + L2 LINE L2 2949 3239 -74 264 236 56 0 chr13 57084932 57085004 -62659894 - LTR50 LTR ERVL -8 787 712 272 250 70 10 chr13 57085133 57085233 -62659665 - LTR50 LTR ERVL -194 601 496 327 294 147 38 chr13 57085281 57085465 -62659433 - LTR50 LTR ERVL -510 285 82 345 323 16 57 chr13 57085559 57085683 -62659215 - L2 LINE L2 -2 3311 3193 247 190 0 86 chr13 57085829 57085887 -62659011 + MER20 DNA MER1_type 1 53 -166 824 272 82 0 chr13 57085891 57086097 -62658801 + MER58A DNA MER1_type 1 223 -1 198 0 0 0 chr13 57086159 57086181 -62658717 + (TATG)n Simple_repeat Simple_repeat 3 24 0 21 36 0 0 chr13 57086959 57086987 -62657911 + AT_rich Low_complexity Low_complexity 1 28 0 1580 208 34 14 chr13 57087610 57087966 -62656932 + MLT1A1 LTR MaLR 1 363 -2 332 32 65 0 chr13 57088588 57088650 -62656248 + (TA)n Simple_repeat Simple_repeat 2 67 0 299 43 0 43 chr13 57088798 57088844 -62656054 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 470 174 0 51 chr13 57088846 57088944 -62655954 + L1MC2 LINE L1 5489 5581 -763 820 194 15 35 chr13 57088953 57089154 -62655744 - L1MD2 LINE L1 0 6359 6163 7738 17 0 6 chr13 57089380 57090306 -62654592 - L1PA3 LINE L1 0 6155 5231 21579 28 3 0 chr13 57090308 57092916 -62651982 + L1PA3 LINE L1 2596 5210 -936 2975 208 80 7 chr13 57092918 57093607 -62651291 + L1MC2 LINE L1 5585 6323 -21 195 250 23 0 chr13 57094189 57094233 -62650665 - L2 LINE L2 -2 3270 3226 273 203 31 16 chr13 57094254 57094318 -62650580 + GA-rich Low_complexity Low_complexity 1 65 0 2453 114 5 39 chr13 57094959 57095008 -62649890 + L1PB2 LINE L1 5753 5802 -349 414 69 0 0 chr13 57095008 57095066 -62649832 + (CA)n Simple_repeat Simple_repeat 2 59 0 2453 114 5 39 chr13 57095066 57095427 -62649471 + L1PB2 LINE L1 5802 6149 -2 197 391 65 0 chr13 57095983 57096121 -62648777 + L2 LINE L2 3117 3263 -9 21 36 0 0 chr13 57096779 57096807 -62648091 + AT_rich Low_complexity Low_complexity 1 28 0 182 150 25 0 chr13 57097490 57097530 -62647368 + (TTA)n Simple_repeat Simple_repeat 1 41 0 215 355 0 0 chr13 57100107 57100183 -62644715 + (ATGGTG)n Simple_repeat Simple_repeat 5 80 0 22 0 0 0 chr13 57100458 57100480 -62644418 + AT_rich Low_complexity Low_complexity 1 22 0 38 0 0 0 chr13 57100539 57100577 -62644321 + AT_rich Low_complexity Low_complexity 1 38 0 523 319 119 13 chr13 57100978 57101204 -62643694 + MIR SINE MIR 8 257 -5 27 73 0 0 chr13 57101390 57101445 -62643453 + AT_rich Low_complexity Low_complexity 1 55 0 24 53 0 0 chr13 57102057 57102095 -62642803 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr13 57102273 57102302 -62642596 + AT_rich Low_complexity Low_complexity 1 29 0 1077 205 102 7 chr13 57102593 57102951 -62641947 - L1M2 LINE L1 -743 5403 5072 2229 172 86 15 chr13 57102953 57103430 -62641468 + L1MA7 LINE L1 5779 6289 -2 374 200 0 12 chr13 57103452 57103532 -62641366 - MIR SINE MIR -19 243 165 492 266 116 17 chr13 57103632 57103805 -62641093 - MLT1J1 LTR MaLR -120 326 137 396 196 38 89 chr13 57104073 57104231 -62640667 - L1MC3 LINE L1 0 7785 7636 213 132 0 0 chr13 57105362 57105400 -62639498 + (TC)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr13 57105612 57105641 -62639257 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 57105673 57105695 -62639203 + AT_rich Low_complexity Low_complexity 1 22 0 1410 139 0 103 chr13 57107165 57107446 -62637452 - AluJo SINE Alu -49 263 12 2476 250 64 21 chr13 57107643 57108420 -62636478 + Charlie1a DNA MER1_type 1 811 -644 322 280 19 13 chr13 57108408 57108565 -62636333 + Charlie1a DNA MER1_type 1297 1454 -1 * 509 345 67 69 chr13 57109688 57110181 -62634717 + MLT1K LTR MaLR 16 507 -81 341 241 9 0 chr13 57110184 57110296 -62634602 + (TA)n Simple_repeat Simple_repeat 2 114 0 2612 231 13 7 chr13 57111333 57111951 -62632947 - L1MB5 LINE L1 -1 6173 5552 2127 125 22 52 chr13 57111955 57112265 -62632633 + THE1B LTR MaLR 9 327 -37 2029 112 4 0 chr13 57112265 57112543 -62632355 + AluSx SINE Alu 1 279 -33 309 26 0 0 chr13 57112549 57112587 -62632311 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2127 125 22 52 chr13 57112587 57112636 -62632262 + THE1B LTR MaLR 332 364 0 6376 265 73 31 chr13 57112636 57113728 -62631170 - L1MB5 LINE L1 -633 5541 4497 183 42 0 0 chr13 57113728 57113752 -62631146 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6376 265 73 31 chr13 57113752 57115754 -62629144 - L1MB5 LINE L1 -1677 4497 2312 236 229 49 78 chr13 57115753 57115997 -62628901 + L1MEc LINE L1 2030 2266 -4130 * 225 180 74 8 chr13 57116024 57116146 -62628752 + (TA)n Simple_repeat Simple_repeat 2 131 0 778 230 36 0 chr13 57116303 57116468 -62628430 + MLT1A2 LTR MaLR 204 374 0 357 269 84 31 chr13 57116468 57116695 -62628203 + L1MEc LINE L1 3871 4109 -2106 1570 194 22 36 chr13 57116701 57117061 -62627837 + MLT2C1 LTR ERVL 3 357 -40 291 28 0 0 chr13 57117074 57117110 -62627788 + (TG)n Simple_repeat Simple_repeat 1 36 0 368 294 41 35 chr13 57117182 57117352 -62627546 + L1MEc LINE L1 4129 4299 -1916 818 189 156 4 chr13 57117394 57117637 -62627261 - MER33 DNA MER1_type -44 280 1 493 157 0 0 chr13 57118621 57118710 -62626188 - L1MA3 LINE L1 0 6305 6217 302 224 0 15 chr13 57118905 57118958 -62625940 - L1MC4 LINE L1 -1339 6703 6650 2051 110 0 50 chr13 57118958 57119259 -62625639 - AluSp SINE Alu -27 286 1 302 224 0 15 chr13 57119259 57119272 -62625626 - L1MC4 LINE L1 -1392 6650 6638 563 29 69 0 chr13 57119281 57119383 -62625515 + (TA)n Simple_repeat Simple_repeat 1 109 0 21 36 0 0 chr13 57119480 57119508 -62625390 + AT_rich Low_complexity Low_complexity 1 28 0 971 224 78 20 chr13 57120357 57120715 -62624183 - Charlie1b DNA MER1_type -3 520 142 24 0 0 0 chr13 57121408 57121432 -62623466 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr13 57121587 57121622 -62623276 + AT_rich Low_complexity Low_complexity 1 35 0 1244 201 188 20 chr13 57123620 57123964 -62620934 - MSTC LTR MaLR 0 365 1 23 0 0 0 chr13 57125446 57125469 -62619429 + AT_rich Low_complexity Low_complexity 1 23 0 205 344 51 56 chr13 57125987 57126182 -62618716 + L2 LINE L2 2607 2800 -514 182 159 175 63 chr13 57126521 57126584 -62618314 + L2 LINE L2 466 535 -2779 2334 32 0 7 chr13 57126717 57127034 -62617864 + AluY SINE Alu 1 315 0 21 0 0 0 chr13 57127034 57127055 -62617843 + AT_rich Low_complexity Low_complexity 1 21 0 545 330 62 17 chr13 57127063 57127351 -62617547 + L2 LINE L2 714 1014 -2300 494 302 73 101 chr13 57127384 57127880 -62617018 + L2 LINE L2 2832 3313 0 2501 318 74 48 chr13 57128030 57129472 -62615426 + L2 LINE L2 1208 2686 -628 2200 266 64 26 chr13 57129490 57130047 -62614851 - L1ME2 LINE L1 -19 6214 5611 772 69 0 0 chr13 57130047 57130148 -62614750 - L1PA8 LINE L1 -2 6170 6070 2200 266 64 26 chr13 57130148 57130428 -62614470 - L1ME2 LINE L1 -622 5611 5343 279 247 25 0 chr13 57130452 57130533 -62614365 - L1ME2 LINE L1 -1049 5166 5084 1097 288 95 37 chr13 57130689 57130784 -62614114 - L1ME2 LINE L1 -1198 5017 4929 1317 249 42 42 chr13 57130784 57131289 -62613609 - MLT1D LTR MaLR 0 505 1 1097 288 95 37 chr13 57131289 57131918 -62612980 - L1ME2 LINE L1 -1286 4929 4251 * 4571 195 39 36 chr13 57131914 57133219 -62611679 - L1MA10 LINE L1 0 6334 5023 879 214 6 0 chr13 57133270 57133448 -62611450 + L1 LINE L1 4832 5010 -1136 735 308 37 48 chr13 57133560 57133988 -62610910 - L1ME2 LINE L1 -4488 1793 1402 2288 116 3 0 chr13 57133988 57134299 -62610599 - AluSx SINE Alu 0 312 1 735 308 37 48 chr13 57134299 57134428 -62610470 - L1ME2 LINE L1 -4879 1402 1273 2857 3 0 0 chr13 57135101 57135440 -62609458 - AluYa5 SINE Alu 0 339 1 2051 152 0 0 chr13 57135943 57136240 -62608658 + AluSx SINE Alu 1 297 -15 21 36 0 0 chr13 57136905 57136933 -62607965 + AT_rich Low_complexity Low_complexity 1 28 0 572 230 0 24 chr13 57137379 57137505 -62607393 + FLAM_A SINE Alu 1 123 -10 279 0 0 0 chr13 57138645 57138676 -62606222 + (TG)n Simple_repeat Simple_repeat 2 32 0 604 129 7 114 chr13 57139006 57139146 -62605752 + LTR7 LTR ERV1 1 125 -325 872 193 64 20 chr13 57139323 57139525 -62605373 + LTR7 LTR ERV1 238 448 -2 2459 59 0 13 chr13 57140189 57140492 -62604406 - AluY SINE Alu -12 299 1 22 0 0 0 chr13 57140617 57140639 -62604259 + AT_rich Low_complexity Low_complexity 1 22 0 1748 194 53 31 chr13 57141050 57141593 -62603305 + MLT2A2 LTR ERVL 1 554 0 11985 184 49 18 chr13 57142771 57144762 -62600136 + L1M1 LINE L1 14 2832 -4733 5814 19 0 0 chr13 57144762 57145429 -62599469 + L1PA3 LINE L1 5489 6155 0 11985 184 49 18 chr13 57145429 57146475 -62598423 + L1M1 LINE L1 2832 3843 -3722 7935 183 17 7 chr13 57146471 57148463 -62596435 + L1M1 LINE L1 5091 7105 -616 * 253 157 0 0 chr13 57148457 57148508 -62596390 + L1MA3 LINE L1 6249 6299 -6 * 860 273 38 64 chr13 57150787 57151286 -62593612 - HAL1 LINE L1 -757 1750 1265 31 0 0 0 chr13 57151317 57151348 -62593550 + AT_rich Low_complexity Low_complexity 1 31 0 300 307 90 69 chr13 57151551 57151883 -62593015 - HAL1 LINE L1 -1640 867 529 248 259 52 111 chr13 57152113 57152383 -62592515 - HAL1 LINE L1 -2154 353 100 1953 128 7 0 chr13 57152899 57153225 -62591673 - AluSq SINE Alu 0 328 1 255 339 37 0 chr13 57153316 57153425 -62591473 + L2 LINE L2 2595 2707 -607 768 280 18 0 chr13 57153525 57153693 -62591205 + MER45A DNA AcHobo 8 178 0 337 295 11 0 chr13 57153697 57153792 -62591106 + MIR SINE MIR 161 256 -6 206 174 0 22 chr13 57153799 57153845 -62591053 + (TTA)n Simple_repeat Simple_repeat 1 45 0 522 319 37 11 chr13 57154990 57155182 -62589716 + MIR SINE MIR 34 228 -34 29 84 0 0 chr13 57155787 57155858 -62589040 + AT_rich Low_complexity Low_complexity 1 71 0 1013 82 0 15 chr13 57156126 57156261 -62588637 + AluY SINE Alu 1 133 -178 2268 66 0 7 chr13 57157079 57157368 -62587530 - AluY SINE Alu -11 300 14 597 200 0 0 chr13 57158173 57158283 -62586615 - FLAM_A SINE Alu -9 133 24 2501 51 0 0 chr13 57158511 57158806 -62586092 + AluY SINE Alu 1 295 -16 957 223 33 0 chr13 57159005 57159189 -62585709 + L1PA16 LINE L1 13 202 -6647 * 12388 217 30 13 chr13 57159187 57161571 -62583327 + L1PA16 LINE L1 958 3298 -3579 7129 153 17 1 chr13 57161571 57163555 -62581343 + L1PA10 LINE L1 4150 6156 -12 12388 217 30 13 chr13 57163555 57167020 -62577878 + L1PA16 LINE L1 3298 6877 0 1348 176 33 9 chr13 57167227 57167562 -62577336 + Tigger4(Zombi) DNA MER2_type 1 2729 -2 1508 201 0 33 chr13 57167698 57168002 -62576896 + AluJb SINE Alu 1 294 -18 1191 123 10 15 chr13 57168181 57168385 -62576513 - L1PB2 LINE L1 0 6151 5949 4105 201 6 3 chr13 57168385 57169253 -62575645 - L1 LINE L1 -3167 2979 2110 6629 142 32 11 chr13 57169258 57170488 -62574410 - L1PBa LINE L1 -4094 2769 1513 3207 101 30 4 chr13 57170493 57170968 -62573930 - LTR15 LTR ERV1 -6 487 1 899 225 106 19 chr13 57170968 57172134 -62572764 - L1PBa LINE L1 -5346 1517 105 28 29 0 0 chr13 57172299 57172334 -62572564 + AT_rich Low_complexity Low_complexity 1 35 0 1603 132 8 4 chr13 57173430 57173672 -62571226 + AluSq SINE Alu 41 283 -30 360 59 0 0 chr13 57173675 57173726 -62571172 + (CATA)n Simple_repeat Simple_repeat 2 52 0 3282 89 13 0 chr13 57173851 57174298 -62570600 + MLT2A2 LTR ERVL 1 453 0 315 329 103 14 chr13 57174633 57174779 -62570119 - MIR SINE MIR -29 233 75 1489 129 20 27 chr13 57174897 57175253 -62569645 - Tigger2 DNA MER2_type -38 2680 2281 358 200 0 0 chr13 57175257 57175322 -62569576 - Tigger2 DNA MER2_type -2653 65 1 * 565 250 125 18 chr13 57175322 57175545 -62569353 + MER2 DNA MER2_type 97 343 -2 761 198 94 68 chr13 57175651 57175959 -62568939 + MER33 DNA MER1_type 5 320 -4 2243 104 0 3 chr13 57176213 57176520 -62568378 - AluSc SINE Alu -3 306 1 21 0 0 0 chr13 57176762 57176783 -62568115 + AT_rich Low_complexity Low_complexity 1 21 0 403 218 102 80 chr13 57177950 57178175 -62566723 - L1MC5 LINE L1 -424 7537 7308 344 294 0 0 chr13 57178615 57178707 -62566191 - L2 LINE L2 -6 3307 3216 661 49 0 39 chr13 57178841 57178943 -62565955 - AluY SINE Alu 0 311 214 22 35 0 0 chr13 57179111 57179140 -62565758 + AT_rich Low_complexity Low_complexity 1 29 0 26 98 0 0 chr13 57179628 57179710 -62565188 + AT_rich Low_complexity Low_complexity 1 82 0 215 179 0 0 chr13 57182633 57182672 -62562226 + L2 LINE L2 3272 3310 -3 500 85 12 37 chr13 57183153 57183235 -62561663 + MADE1 DNA Mariner 1 80 0 290 213 12 25 chr13 57183240 57183320 -62561578 - LTR67 LTR ERVL -6 551 473 24 32 0 0 chr13 57184567 57184598 -62560300 + AT_rich Low_complexity Low_complexity 1 31 0 1784 163 14 94 chr13 57184609 57185033 -62559865 - MLT1B LTR MaLR 0 390 1 219 273 0 18 chr13 57185076 57185131 -62559767 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 268 183 141 0 chr13 57186370 57186441 -62558457 + L1ME4a LINE L1 6012 6092 -29 624 128 49 0 chr13 57186470 57186572 -62558326 - THE1C LTR MaLR -19 356 250 2076 114 7 17 chr13 57188125 57188424 -62556474 + AluSg SINE Alu 1 296 -14 180 0 0 0 chr13 57188527 57188547 -62556351 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1777 309 120 46 chr13 57189769 57189935 -62554963 - L2 LINE L2 0 3313 3161 204 111 0 0 chr13 57189935 57189971 -62554927 + (TG)n Simple_repeat Simple_repeat 1 36 0 1777 309 120 46 chr13 57189971 57191029 -62553869 - L2 LINE L2 -152 3161 2042 183 122 54 27 chr13 57191050 57191124 -62553774 + (TTATA)n Simple_repeat Simple_repeat 1 76 0 24 67 0 0 chr13 57191131 57191176 -62553722 + AT_rich Low_complexity Low_complexity 1 45 0 453 288 137 66 chr13 57192152 57192562 -62552336 + MLT1K LTR MaLR 36 474 -114 7261 40 0 1 chr13 57192626 57194084 -62550814 - L1PA5 LINE L1 0 6154 4699 265 325 98 24 chr13 57194661 57194784 -62550114 + L3 LINE CR1 1285 1416 -161 333 274 32 11 chr13 57194992 57195087 -62549811 - MIR SINE MIR -109 153 57 29 47 0 0 chr13 57195283 57195326 -62549572 + AT_rich Low_complexity Low_complexity 1 43 0 431 256 196 20 chr13 57195794 57195993 -62548905 + MIR SINE MIR 8 241 -21 296 300 175 0 chr13 57198784 57198944 -62545954 - MIR SINE MIR -44 218 31 2394 218 55 15 chr13 57199720 57200320 -62544578 + MLT1E3 LTR MaLR 1 624 0 28 0 0 0 chr13 57200463 57200491 -62544407 + AT_rich Low_complexity Low_complexity 1 28 0 1814 188 27 3 chr13 57201037 57201373 -62543525 + MER2 DNA MER2_type 1 344 0 288 0 0 0 chr13 57201380 57201412 -62543486 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 128 6 0 chr13 57201486 57201541 -62543357 + AluY SINE Alu 1 40 -262 1575 97 0 0 chr13 57201543 57201749 -62543149 + AluY SINE Alu 92 297 -14 1727 161 73 14 chr13 57201919 57202273 -62542625 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr13 57202368 57202399 -62542499 + AT_rich Low_complexity Low_complexity 1 31 0 953 245 10 10 chr13 57202717 57202925 -62541973 + MER45C DNA AcHobo 1 208 -745 480 284 130 50 chr13 57202940 57203179 -62541719 + MER45C DNA AcHobo 695 952 -1 212 309 36 36 chr13 57203741 57203825 -62541073 - MIR3 SINE MIR -37 171 88 226 282 35 35 chr13 57204537 57204622 -62540276 - L2 LINE L2 -4 3309 3225 387 307 33 40 chr13 57205186 57205336 -62539562 + MIR SINE MIR 20 168 -94 344 239 128 26 chr13 57205683 57205800 -62539098 - MIR3 SINE MIR -76 132 4 1666 194 137 3 chr13 57205997 57206378 -62538520 - MSTB1 LTR MaLR 0 432 1 422 275 56 31 chr13 57206478 57206638 -62538260 + MLT1L LTR MaLR 153 316 -299 252 59 0 0 chr13 57207002 57207036 -62537862 + (TA)n Simple_repeat Simple_repeat 1 34 0 220 225 141 14 chr13 57207172 57207243 -62537655 + L2 LINE L2 2664 2743 -571 386 255 20 60 chr13 57207273 57207422 -62537476 - MER5B DNA MER1_type 0 178 36 256 269 67 58 chr13 57207430 57207534 -62537364 - MER5B DNA MER1_type -68 110 6 250 315 0 0 chr13 57207776 57207849 -62537049 - MLT1J LTR MaLR -324 187 115 602 284 47 58 chr13 57208252 57208509 -62536389 + MIR SINE MIR 3 256 -6 845 328 37 32 chr13 57209712 57210114 -62534784 + L1M3d LINE L1 1 404 -5487 287 360 20 39 chr13 57210200 57210353 -62534545 + L1M3d LINE L1 523 672 -5219 28 0 0 0 chr13 57210447 57210475 -62534423 + AT_rich Low_complexity Low_complexity 1 28 0 639 272 179 41 chr13 57210491 57210628 -62534270 + L1M3d LINE L1 664 781 -5120 553 235 43 0 chr13 57210628 57210743 -62534155 - FLAM_A SINE Alu -12 121 2 639 272 179 41 chr13 57210743 57211163 -62533735 + L1M3d LINE L1 781 1298 -4603 * 12446 83 4 1 chr13 57211158 57213640 -62531258 + L1PA7 LINE L1 3640 6124 -30 918 237 48 71 chr13 57213650 57214042 -62530856 + L1MB1 LINE L1 1493 1875 -4509 728 261 85 24 chr13 57214408 57214957 -62529941 + L1MB1 LINE L1 1979 2562 -3820 12632 41 0 19 chr13 57214957 57216834 -62528064 - L1PA5 LINE L1 -486 5668 3827 4005 44 2 0 chr13 57216834 57217326 -62527572 + L1PA5 LINE L1 5648 6143 -11 25 31 0 0 chr13 57217340 57217372 -62527526 + AT_rich Low_complexity Low_complexity 1 32 0 2194 259 66 16 chr13 57217385 57218202 -62526696 + L1MB1 LINE L1 2551 3408 -2974 * 6309 201 20 14 chr13 57218194 57219629 -62525269 + L1MB1 LINE L1 3800 5243 -1139 2560 14 0 0 chr13 57219619 57219909 -62524989 + L1HS LINE L1 5855 6144 -11 * 244 229 0 0 chr13 57219920 57219981 -62524917 + A-rich Low_complexity Low_complexity 1 61 0 3034 206 39 51 chr13 57219981 57221165 -62523733 + L1MB1 LINE L1 5228 6395 -9 593 279 115 32 chr13 57221250 57221562 -62523336 + L1 LINE L1 2110 2447 -3699 * 613 119 19 132 chr13 57221561 57221720 -62523178 + L1MB1 LINE L1 6028 6168 0 201 266 43 0 chr13 57222124 57222218 -62522680 + (AATAG)n Simple_repeat Simple_repeat 3 100 0 278 276 0 0 chr13 57222650 57222726 -62522172 + MER69 DNA AcHobo 2442 2517 -9 392 258 65 0 chr13 57223483 57223638 -62521260 + MER112 DNA MER1_type 90 254 -6 707 224 7 0 chr13 57223883 57224026 -62520872 - MER58A DNA MER1_type -35 189 46 295 283 76 43 chr13 57224062 57224246 -62520652 + L2 LINE L2 3113 3302 -11 486 306 35 0 chr13 57224246 57224416 -62520482 - MER110 LTR ERV1 0 491 316 333 0 0 0 chr13 57224435 57224472 -62520426 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 2222 201 66 4 chr13 57224472 57225004 -62519894 - L1MD2 LINE L1 -16 6343 5780 274 243 29 14 chr13 57225252 57225322 -62519576 + L2 LINE L2 3243 3313 0 26 30 0 0 chr13 57225336 57225369 -62519529 + AT_rich Low_complexity Low_complexity 1 33 0 180 387 42 17 chr13 57225469 57225588 -62519310 + MIR3 SINE MIR 86 207 -1 374 183 0 0 chr13 57225632 57225703 -62519195 - L1MD3 LINE L1 -3 7992 7922 1743 224 75 5 chr13 57225731 57226160 -62518738 - L1MD2 LINE L1 -517 5842 5384 392 250 17 42 chr13 57226160 57226280 -62518618 - MER110 LTR ERV1 -186 305 189 1463 102 0 5 chr13 57226280 57226495 -62518403 + L1PA7 LINE L1 5780 5993 -161 7254 32 2 0 chr13 57226538 57228063 -62516835 + L1PA5 LINE L1 4634 6159 0 325 304 27 0 chr13 57228067 57228179 -62516719 - MER110 LTR ERV1 -318 173 59 2151 65 0 4 chr13 57228379 57228654 -62516244 + AluY SINE Alu 3 276 -35 206 293 0 0 chr13 57228882 57228940 -62515958 + MIR SINE MIR 41 98 -164 2142 158 6 0 chr13 57228975 57229330 -62515568 - L1P LINE L1 -1838 4308 3952 25 0 0 0 chr13 57229330 57229355 -62515543 + AT_rich Low_complexity Low_complexity 1 25 0 338 278 196 0 chr13 57229434 57229567 -62515331 + L1ME LINE L1 5526 5684 -437 2253 87 7 10 chr13 57229593 57229892 -62515006 - AluSx SINE Alu -14 298 1 285 257 100 0 chr13 57229907 57229977 -62514921 + L2 LINE L2 3197 3273 -40 731 139 16 8 chr13 57229990 57230112 -62514786 + L1P4 LINE L1 5578 5700 -468 990 107 13 0 chr13 57230114 57230263 -62514635 + L1P4 LINE L1 5668 5818 -350 23 0 0 0 chr13 57230992 57231015 -62513883 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr13 57231215 57231244 -62513654 + AT_rich Low_complexity Low_complexity 1 29 0 558 0 0 0 chr13 57231426 57231488 -62513410 + (CA)n Simple_repeat Simple_repeat 1 62 0 242 216 14 0 chr13 57232109 57232183 -62512715 + CT-rich Low_complexity Low_complexity 3 77 0 1542 236 25 63 chr13 57233414 57233819 -62511079 + MLT1D LTR MaLR 1 383 -122 1555 228 22 6 chr13 57233819 57234175 -62510723 - MLT1A1 LTR MaLR -2 363 2 1542 236 25 63 chr13 57234175 57234291 -62510607 + MLT1D LTR MaLR 383 502 -3 428 332 101 33 chr13 57234556 57234951 -62509947 - L1M4 LINE L1 -1704 4442 4021 532 272 91 59 chr13 57235297 57235804 -62509094 - HAL1b LINE L1 -607 741 219 31 0 0 0 chr13 57236664 57236695 -62508203 + AT_rich Low_complexity Low_complexity 1 31 0 34 65 0 0 chr13 57236962 57237024 -62507874 + AT_rich Low_complexity Low_complexity 1 62 0 2421 94 13 24 chr13 57237084 57237457 -62507441 - L1PB1 LINE L1 -1 6150 5782 3719 110 10 12 chr13 57237504 57237525 -62507373 - L1PB1 LINE L1 -356 5795 5775 488 48 48 0 chr13 57237525 57237609 -62507289 + (TA)n Simple_repeat Simple_repeat 2 89 0 3719 110 10 12 chr13 57237609 57238269 -62506629 - L1PB1 LINE L1 -376 5775 5116 52 69 0 0 chr13 57238816 57238917 -62505981 + AT_rich Low_complexity Low_complexity 1 101 0 487 311 45 11 chr13 57239568 57239880 -62505018 - LTR16A LTR ERVL -38 412 65 956 252 92 31 chr13 57240439 57240941 -62503957 - MER76 LTR ERV -39 649 1 1151 335 69 49 chr13 57240986 57241067 -62503831 - MERVL LTR ERVL -597 4888 4810 1806 185 3 57 chr13 57241067 57241435 -62503463 + MER7A DNA MER2_type 1 346 0 1151 335 69 49 chr13 57241435 57243014 -62501884 - MERVL LTR ERVL -675 4810 3195 1185 316 45 68 chr13 57243092 57243900 -62500998 - MERVL LTR ERVL -2079 2917 2129 252 273 13 26 chr13 57244033 57244110 -62500788 - MERVL LTR ERVL -3696 1958 1883 2037 156 58 14 chr13 57244772 57245189 -62499709 - L1MA9 LINE L1 0 6312 5878 898 291 81 31 chr13 57245492 57245815 -62499083 + LTR40a LTR ERVL 4 342 -177 289 239 15 0 chr13 57245816 57245883 -62499015 - MLT1E LTR MaLR -7 647 580 766 303 32 104 chr13 57245893 57246066 -62498832 - MLT1E LTR MaLR -182 411 227 468 51 0 0 chr13 57246066 57246125 -62498773 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 766 303 32 104 chr13 57246125 57246394 -62498504 - MLT1E LTR MaLR -366 227 1 973 167 17 6 chr13 57246399 57246573 -62498325 + LTR40a LTR ERVL 344 519 0 23 0 0 0 chr13 57247756 57247779 -62497119 + AT_rich Low_complexity Low_complexity 1 23 0 214 175 0 48 chr13 57248081 57248144 -62496754 + GA-rich Low_complexity Low_complexity 4 63 0 765 254 6 12 chr13 57248154 57248327 -62496571 + MER63A DNA MER1_type 39 210 0 2668 174 80 28 chr13 57248979 57249594 -62495304 - L1MA4 LINE L1 -8 6292 5646 309 291 179 0 chr13 57250474 57250591 -62494307 + MIR3 SINE MIR 67 204 -4 410 258 0 0 chr13 57250800 57250893 -62494005 + MLT1J1 LTR MaLR 11 103 -343 21 0 0 0 chr13 57251371 57251392 -62493506 + AT_rich Low_complexity Low_complexity 1 21 0 223 180 0 49 chr13 57251803 57251849 -62493049 + GA-rich Low_complexity Low_complexity 4 48 -13 1839 139 0 78 chr13 57251849 57252180 -62492718 + AluSx SINE Alu 1 305 -7 223 180 0 49 chr13 57252180 57252194 -62492704 + GA-rich Low_complexity Low_complexity 48 61 0 190 56 56 0 chr13 57252458 57252494 -62492404 + (TA)n Simple_repeat Simple_repeat 1 38 0 1000 344 46 11 chr13 57252534 57252967 -62491931 + L1M4b LINE L1 33 480 -6379 391 160 0 160 chr13 57252974 57253093 -62491805 + L1M4b LINE L1 1260 1359 -5500 1292 230 34 11 chr13 57253115 57253510 -62491388 + L1M4b LINE L1 1314 1712 -5143 1541 245 34 21 chr13 57253515 57253895 -62491003 - MER70A LTR ERVL 0 472 88 887 147 0 73 chr13 57253885 57254062 -62490836 - MER70B LTR ERVL -414 164 1 * 1143 265 53 20 chr13 57254062 57254708 -62490190 + L1M4b LINE L1 1707 2717 -4241 2946 271 54 38 chr13 57254897 57256720 -62488178 + L1M4 LINE L1 1731 3544 -2671 397 185 93 63 chr13 57256713 57256918 -62487980 + L1M4 LINE L1 3931 4141 -2074 * 382 271 16 8 chr13 57256919 57257048 -62487850 + L1M4 LINE L1 4272 4401 -1814 676 210 44 34 chr13 57257098 57257303 -62487595 + L1MA7 LINE L1 6083 6289 -2 2351 241 42 34 chr13 57257309 57258689 -62486209 + L1M4 LINE L1 4381 5770 -483 1471 272 44 48 chr13 57258724 57259224 -62485674 + MER21B LTR ERV1 22 519 -344 464 329 47 57 chr13 57259555 57259866 -62485032 + MLT1H LTR MaLR 127 434 -115 1731 199 75 94 chr13 57259866 57259943 -62484955 + MER67C LTR ERV1 1 78 -632 2141 117 0 22 chr13 57259943 57260259 -62484639 + AluSx SINE Alu 1 309 -3 1731 199 75 94 chr13 57260259 57260903 -62483995 + MER67C LTR ERV1 78 708 -2 464 329 47 57 chr13 57260903 57261016 -62483882 + MLT1H LTR MaLR 434 547 -2 1704 199 42 154 chr13 57261021 57261826 -62483072 - LTR8A LTR ERV1 0 727 1 10263 199 89 82 chr13 57261864 57266718 -62478180 - HUERS-P1 LTR ERV1 -33 6230 768 2897 191 32 114 chr13 57266715 57267591 -62477307 - HUERS-P1 LTR ERV1 -4461 1485 361 * 211 161 18 18 chr13 57267650 57267706 -62477192 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 393 317 24 37 chr13 57267985 57268149 -62476749 - HUERS-P1 LTR ERV1 -6101 162 1 1911 196 42 154 chr13 57268149 57268930 -62475968 - LTR8A LTR ERV1 0 727 34 348 264 7 42 chr13 57268958 57269102 -62475796 - L1MC5 LINE L1 -38 7923 7785 1389 192 0 12 chr13 57269272 57269522 -62475376 - AluSx SINE Alu -15 297 51 3644 147 43 8 chr13 57270087 57270718 -62474180 - MER39B LTR ERV1 0 653 1 288 241 0 0 chr13 57270893 57270972 -62473926 + (CA)n Simple_repeat Simple_repeat 2 80 0 1132 264 188 41 chr13 57272736 57273274 -62471624 - MLT1E2 LTR MaLR -9 617 1 257 363 81 0 chr13 57273644 57273768 -62471130 + MER5A DNA MER1_type 56 189 0 2418 166 60 20 chr13 57273827 57274374 -62470524 + L1MA8 LINE L1 3997 4565 -1581 1339 269 52 11 chr13 57274374 57274742 -62470156 + MSTD LTR MaLR 1 383 -13 5104 164 42 14 chr13 57274744 57276395 -62468503 + L1MA8 LINE L1 4572 6271 -20 42 48 0 0 chr13 57276395 57276458 -62468440 + AT_rich Low_complexity Low_complexity 1 63 0 592 261 18 78 chr13 57278645 57278945 -62465953 + LTR16A1 LTR ERVL 189 457 0 228 302 189 9 chr13 57279293 57279399 -62465499 - L2 LINE L2 -199 3073 2949 1424 111 5 0 chr13 57279446 57279661 -62465237 - AluSg/x SINE Alu 0 311 96 22 35 0 0 chr13 57280354 57280383 -62464515 + AT_rich Low_complexity Low_complexity 1 29 0 506 111 0 0 chr13 57281770 57281842 -62463056 - MSTA LTR MaLR 0 428 357 570 101 0 0 chr13 57281842 57281921 -62462977 + AluY SINE Alu 18 96 -215 254 326 65 7 chr13 57282500 57282638 -62462260 - MIR SINE MIR -30 232 87 2677 160 25 28 chr13 57282794 57283297 -62461601 - L1MA4 LINE L1 -14 6286 5784 1960 157 0 6 chr13 57283297 57283610 -62461288 - AluSx SINE Alu -1 311 1 2677 160 25 28 chr13 57283610 57283636 -62461262 - L1MA4 LINE L1 -516 5784 5759 21 0 0 0 chr13 57284234 57284255 -62460643 + AT_rich Low_complexity Low_complexity 1 21 0 362 344 16 0 chr13 57284755 57284883 -62460015 - L2 LINE L2 -4 3309 3180 770 280 61 51 chr13 57284914 57285307 -62459591 - MLT1I LTR MaLR -8 401 5 1087 235 24 4 chr13 57285368 57285623 -62459275 + AluJo SINE Alu 1 260 -52 783 104 17 9 chr13 57285687 57285802 -62459096 + MLT1E LTR MaLR 20 135 -458 718 232 107 6 chr13 57285804 57285972 -62458926 - MLT1A2 LTR MaLR 0 374 190 599 306 5 21 chr13 57286054 57286240 -62458658 - MLT1A2 LTR MaLR -191 183 1 * 1571 242 96 16 chr13 57286240 57286672 -62458226 + MLT1E LTR MaLR 127 593 0 1187 289 60 31 chr13 57286760 57287178 -62457720 + MER70B LTR ERVL 1 430 -148 25 0 0 0 chr13 57287464 57287489 -62457409 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 57287559 57287587 -62457311 + AT_rich Low_complexity Low_complexity 1 28 0 418 222 87 16 chr13 57287747 57287873 -62457025 - MLT1H LTR MaLR -4 545 411 365 239 0 0 chr13 57287945 57288016 -62456882 - AluJ/FLAM SINE Alu -223 79 9 1324 186 3 3 chr13 57288117 57288412 -62456486 - L1MA4 LINE L1 -3 6297 6003 210 37 0 0 chr13 57288833 57288860 -62456038 + (TTAG)n Simple_repeat Simple_repeat 2 28 0 2159 69 28 10 chr13 57288860 57289139 -62455759 - AluY SINE Alu -24 287 1 198 367 0 0 chr13 57289174 57289253 -62455645 - MIR SINE MIR -74 188 110 435 261 85 0 chr13 57289360 57289490 -62455408 + MLT1I LTR MaLR 81 221 -188 360 293 30 42 chr13 57289554 57289721 -62455177 + MLT1I LTR MaLR 245 409 0 235 315 41 0 chr13 57289721 57289794 -62455104 - MIR SINE MIR -185 77 2 2053 102 7 16 chr13 57289820 57290123 -62454775 - AluSx SINE Alu -12 300 1 181 243 0 0 chr13 57290650 57290687 -62454211 - MIR SINE MIR -6 256 220 228 250 0 0 chr13 57292286 57292302 -62452596 + MER3 DNA MER1_type 33 48 -161 238 232 0 0 chr13 57292302 57292358 -62452540 - MER3 DNA MER1_type -1 208 153 195 100 0 0 chr13 57292853 57292883 -62452015 + (CA)n Simple_repeat Simple_repeat 1 30 0 1571 189 43 0 chr13 57292884 57293206 -62451692 + MER44D DNA MER2_type 4 609 0 221 209 60 0 chr13 57293206 57293273 -62451625 + (TA)n Simple_repeat Simple_repeat 1 71 0 1075 346 22 7 chr13 57293802 57294215 -62450683 + LTR16A LTR ERVL 25 443 -7 475 308 23 6 chr13 57294269 57294441 -62450457 + MIR SINE MIR 75 249 -13 29 60 0 0 chr13 57295432 57295482 -62449416 + AT_rich Low_complexity Low_complexity 1 50 0 218 234 21 0 chr13 57296427 57296474 -62448424 + MIR SINE MIR 96 143 -119 237 65 0 0 chr13 57296650 57296681 -62448217 + (T)n Simple_repeat Simple_repeat 1 31 0 288 0 0 0 chr13 57296681 57296713 -62448185 + (TG)n Simple_repeat Simple_repeat 1 32 0 2147 160 2 90 chr13 57296713 57297157 -62447741 - LTR8 LTR ERV1 -106 585 181 219 331 24 48 chr13 57297176 57297300 -62447598 + MIR SINE MIR 142 262 0 249 33 0 0 chr13 57298468 57298498 -62446400 + (TC)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr13 57298497 57298523 -62446375 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 1955 184 54 7 chr13 57298526 57298933 -62445965 + MSTB LTR MaLR 1 426 0 390 301 201 9 chr13 57300432 57300661 -62444237 - L2 LINE L2 -165 3148 2876 1344 201 27 133 chr13 57300776 57300999 -62443899 + MSTD LTR MaLR 1 155 -241 3012 154 71 4 chr13 57300999 57301537 -62443361 + L1PA16 LINE L1 5591 6164 -2 1344 201 27 133 chr13 57301537 57301756 -62443142 + MSTD LTR MaLR 155 396 0 187 409 17 9 chr13 57302693 57302808 -62442090 - L2 LINE L2 -332 2940 2825 22 0 0 0 chr13 57303035 57303057 -62441841 + AT_rich Low_complexity Low_complexity 1 22 0 13419 228 31 21 chr13 57303280 57305570 -62439328 - L1PA16 LINE L1 -9 7595 5329 1420 221 10 17 chr13 57305570 57305868 -62439030 - AluJb SINE Alu -16 296 1 13419 228 31 21 chr13 57305868 57308746 -62436152 - L1PA16 LINE L1 -2275 5329 2354 15511 176 38 12 chr13 57308754 57309070 -62435828 - L1PB2 LINE L1 -37 6830 6524 414 39 0 0 chr13 57309070 57309122 -62435776 + (TG)n Simple_repeat Simple_repeat 2 53 0 15511 176 38 12 chr13 57309122 57309549 -62435349 - L1PB2 LINE L1 -343 6524 6110 1534 214 7 0 chr13 57309549 57309866 -62435032 - AluSx SINE Alu 0 319 1 15511 176 38 12 chr13 57309866 57315751 -62429147 - L1PB2 LINE L1 -757 6110 1 316 214 29 64 chr13 57315770 57315910 -62428988 - L1PA16 LINE L1 -5217 2364 2230 253 316 32 0 chr13 57316168 57316263 -62428635 - L1PA16 LINE L1 -5399 2182 2085 621 342 18 44 chr13 57316552 57317002 -62427896 - L1PA16 LINE L1 -6349 1225 788 21 36 0 0 chr13 57317209 57317237 -62427661 + AT_rich Low_complexity Low_complexity 1 28 0 300 27 0 0 chr13 57317887 57317924 -62426974 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 324 0 0 0 chr13 57317923 57317959 -62426939 + (CA)n Simple_repeat Simple_repeat 1 36 0 196 347 195 20 chr13 57319169 57319722 -62425176 + L2 LINE L2 1788 2437 -877 954 172 75 0 chr13 57319763 57319949 -62424949 + L1PA16 LINE L1 5964 6163 -3 2682 167 6 62 chr13 57320018 57320425 -62424473 + LTR44 LTR ERV1 1 371 -148 5029 52 2 0 chr13 57320425 57321055 -62423843 + L1PA5 LINE L1 5524 6154 0 2682 167 6 62 chr13 57321055 57321197 -62423701 + LTR44 LTR ERV1 371 519 0 186 370 134 0 chr13 57321201 57321328 -62423570 + L2 LINE L2 2596 2739 -575 22 0 0 0 chr13 57321671 57321693 -62423205 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr13 57323083 57323127 -62421771 + AT_rich Low_complexity Low_complexity 1 44 0 1267 294 96 12 chr13 57323547 57324057 -62420841 - MLT1H1 LTR MaLR -2 553 1 21 36 0 0 chr13 57325694 57325722 -62419176 + AT_rich Low_complexity Low_complexity 1 28 0 366 260 117 96 chr13 57326177 57326326 -62418572 - L1M4 LINE L1 -2169 3977 3833 2054 111 0 14 chr13 57326326 57326623 -62418275 - AluSc SINE Alu -16 293 1 366 260 117 96 chr13 57326623 57326850 -62418048 - L1M4 LINE L1 -2313 3833 3593 21 0 0 0 chr13 57326852 57326873 -62418025 + AT_rich Low_complexity Low_complexity 1 21 0 220 250 13 13 chr13 57327207 57327283 -62417615 + T-rich Low_complexity Low_complexity 4 79 0 1891 153 0 20 chr13 57327682 57327983 -62416915 - AluSx SINE Alu -15 297 3 345 100 0 0 chr13 57329394 57329444 -62415454 + (TA)n Simple_repeat Simple_repeat 1 50 0 222 284 302 18 chr13 57329797 57329966 -62414932 + MIR SINE MIR 46 262 0 4963 165 25 4 chr13 57330670 57331591 -62413307 - L1MA6 LINE L1 0 6300 5361 1320 200 0 31 chr13 57331637 57331897 -62413001 + AluJb SINE Alu 54 305 -7 1474 174 34 27 chr13 57333122 57333415 -62411483 + AluJo SINE Alu 1 295 -17 1594 113 5 0 chr13 57333434 57333655 -62411243 + AluSq SINE Alu 1 222 -91 279 0 0 0 chr13 57333773 57333804 -62411094 + (CA)n Simple_repeat Simple_repeat 2 32 0 649 137 0 8 chr13 57334004 57334169 -62410729 + AluSg/x SINE Alu 177 312 0 629 270 40 0 chr13 57334311 57334511 -62410387 + L1MEc LINE L1 764 971 -5425 301 258 0 0 chr13 57334524 57334586 -62410312 + MER96 DNA MER1_type? 114 175 0 356 231 0 46 chr13 57334587 57334717 -62410181 + L1MEc LINE L1 991 1114 -5282 25 31 0 0 chr13 57334827 57334859 -62410039 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr13 57337785 57337809 -62407089 + AT_rich Low_complexity Low_complexity 1 24 0 1031 181 5 11 chr13 57338464 57338652 -62406246 + MER58A DNA MER1_type 37 223 -1 216 136 17 51 chr13 57339635 57339694 -62405204 + (TTAAA)n Simple_repeat Simple_repeat 5 61 0 2784 13 0 0 chr13 57340513 57340823 -62404075 - AluYb8 SINE Alu -8 310 1 1490 176 86 0 chr13 57341184 57341462 -62403436 + AluJb SINE Alu 3 304 -8 635 269 40 17 chr13 57341765 57341940 -62402958 - MER46C DNA MER2_type -58 280 102 186 321 0 0 chr13 57342066 57342119 -62402779 - L2 LINE L2 -5 3308 3256 441 0 0 0 chr13 57342557 57342606 -62402292 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 68 0 0 chr13 57346444 57346488 -62398410 + AT_rich Low_complexity Low_complexity 1 44 0 27 49 0 0 chr13 57346736 57346777 -62398121 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr13 57346888 57346909 -62397989 + AT_rich Low_complexity Low_complexity 1 21 0 202 212 30 15 chr13 57347091 57347157 -62397741 + (TA)n Simple_repeat Simple_repeat 1 67 0 25 31 0 0 chr13 57347218 57347250 -62397648 + AT_rich Low_complexity Low_complexity 1 32 0 198 386 15 23 chr13 57347336 57347468 -62397430 + MIR SINE MIR 1 131 -131 21 36 0 0 chr13 57350072 57350100 -62394798 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr13 57351200 57351240 -62393658 + (TA)n Simple_repeat Simple_repeat 2 41 0 180 0 0 0 chr13 57351240 57351260 -62393638 + (T)n Simple_repeat Simple_repeat 1 20 0 24 67 0 0 chr13 57352372 57352417 -62392481 + AT_rich Low_complexity Low_complexity 1 45 0 37 62 0 0 chr13 57352909 57352974 -62391924 + AT_rich Low_complexity Low_complexity 1 65 0 2281 96 3 3 chr13 57353127 57353430 -62391468 + AluSx SINE Alu 1 303 -9 302 101 58 0 chr13 57355880 57355949 -62388949 + (TG)n Simple_repeat Simple_repeat 2 74 0 252 0 0 0 chr13 57356131 57356159 -62388739 + (TG)n Simple_repeat Simple_repeat 2 29 0 212 211 19 0 chr13 57356647 57356699 -62388199 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 36 0 0 chr13 57357576 57357604 -62387294 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr13 57360751 57360785 -62384113 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 57362352 57362373 -62382525 + AT_rich Low_complexity Low_complexity 1 21 0 955 113 7 0 chr13 57367922 57368063 -62376835 + AluSp/q SINE Alu 164 305 -8 261 163 0 0 chr13 57368357 57368406 -62376492 + T-rich Low_complexity Low_complexity 1 49 0 180 253 12 60 chr13 57368604 57368687 -62376211 + MIR SINE MIR 184 262 0 459 330 27 27 chr13 57372053 57372241 -62372657 + MIR SINE MIR 40 227 -35 24 0 0 0 chr13 57373413 57373437 -62371461 + AT_rich Low_complexity Low_complexity 1 24 0 744 43 0 0 chr13 57376172 57376264 -62368634 + (TA)n Simple_repeat Simple_repeat 2 93 0 998 230 95 40 chr13 57376264 57376670 -62368228 - MER57A LTR ERV1 -2 401 1 1773 168 3 0 chr13 57376714 57376999 -62367899 - AluSx SINE Alu -26 286 1 25 51 0 0 chr13 57379360 57379399 -62365499 + AT_rich Low_complexity Low_complexity 1 39 0 362 221 168 0 chr13 57379407 57379520 -62365378 + MIR SINE MIR 75 206 -56 398 234 11 0 chr13 57382932 57383026 -62361872 - MER67D LTR ERV1 -78 436 342 239 288 51 17 chr13 57383070 57383188 -62361710 - L1MC4a LINE L1 -1216 6592 6471 262 247 13 0 chr13 57383362 57383439 -62361459 - L1MC4 LINE L1 -51 7991 7914 470 259 42 12 chr13 57383503 57383669 -62361229 - L1MC4 LINE L1 -114 7928 7758 329 189 0 132 chr13 57383669 57383775 -62361123 + MER2 DNA MER2_type 1 92 -253 1057 130 0 47 chr13 57383785 57383977 -62360921 + AluJo SINE Alu 121 304 0 260 286 0 0 chr13 57383989 57384045 -62360853 - MER2 DNA MER2_type -5 340 285 1856 168 7 0 chr13 57384067 57384365 -62360533 + AluJb SINE Alu 11 310 -2 371 290 83 16 chr13 57384396 57384589 -62360309 - L1MC4 LINE L1 -288 7754 7549 21 36 0 0 chr13 57385258 57385286 -62359612 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr13 57385718 57385757 -62359141 + AT_rich Low_complexity Low_complexity 1 39 0 190 274 0 0 chr13 57386045 57386096 -62358802 - MIR SINE MIR -120 142 92 780 147 0 23 chr13 57386372 57386501 -62358397 - FLAM_C SINE Alu -7 126 1 2470 57 0 3 chr13 57386571 57386871 -62358027 + AluY SINE Alu 1 299 -12 1138 226 75 29 chr13 57387811 57388043 -62356855 + MLT1E2 LTR MaLR 61 316 -310 1318 62 0 11 chr13 57388043 57388220 -62356678 + L1PA4 LINE L1 5981 6155 0 1138 226 75 29 chr13 57388220 57388336 -62356562 + MLT1E2 LTR MaLR 316 425 -201 21 0 0 0 chr13 57388419 57388440 -62356458 + AT_rich Low_complexity Low_complexity 1 21 0 308 297 68 95 chr13 57388728 57389065 -62355833 - HAL1 LINE L1 -1097 1410 1083 2223 88 0 0 chr13 57389104 57389412 -62355486 - AluSq SINE Alu 0 308 1 6661 42 1 0 chr13 57390187 57390994 -62353904 + L1P LINE L1 3449 4256 -1890 21 36 0 0 chr13 57391601 57391629 -62353269 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 57391953 57391976 -62352922 + AT_rich Low_complexity Low_complexity 1 23 0 709 93 9 0 chr13 57443007 57443115 -62301783 + L1PA10 LINE L1 6060 6168 0 2310 65 0 3 chr13 57443133 57443424 -62301474 + AluY SINE Alu 1 290 -21 1247 250 17 28 chr13 57443587 57444119 -62300779 + L1M4c LINE L1 2034 2595 -3884 189 0 0 0 chr13 57444121 57444142 -62300756 + (A)n Simple_repeat Simple_repeat 1 21 0 816 310 163 20 chr13 57444163 57444569 -62300329 - MLT1K LTR MaLR -123 465 2 182 267 17 33 chr13 57444861 57444921 -62299977 - MIR SINE MIR -61 147 89 216 0 0 0 chr13 57445830 57445854 -62299044 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2029 154 3 0 chr13 57446083 57446394 -62298504 - AluSx SINE Alu 0 312 1 187 277 181 32 chr13 57446672 57446766 -62298132 + L3 LINE CR1 1447 1554 -23 261 128 0 0 chr13 57447644 57447691 -62297207 + (TC)n Simple_repeat Simple_repeat 2 48 0 2336 94 0 0 chr13 57447963 57448272 -62296626 + AluSg SINE Alu 1 309 -1 213 235 0 0 chr13 57448355 57448406 -62296492 + (TA)n Simple_repeat Simple_repeat 2 52 0 231 280 60 60 chr13 57448982 57449082 -62295816 + MIR SINE MIR 3 102 -160 607 277 69 5 chr13 57449084 57449286 -62295612 + MER58A DNA MER1_type 9 223 -1 493 266 57 6 chr13 57449286 57449444 -62295454 + MIR SINE MIR 97 262 0 187 51 0 51 chr13 57449542 57449581 -62295317 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr13 57452437 57452462 -62292436 + AT_rich Low_complexity Low_complexity 1 25 0 291 139 0 14 chr13 57452990 57453047 -62291851 + MLT2B1 LTR ERVL 399 518 -2 180 347 27 82 chr13 57453232 57453379 -62291519 - L2 LINE L2 -237 3035 2897 1413 168 25 35 chr13 57453669 57453954 -62290944 + AluJo SINE Alu 21 302 -10 22 35 0 0 chr13 57454265 57454294 -62290604 + AT_rich Low_complexity Low_complexity 1 29 0 749 120 34 6 chr13 57455592 57455767 -62289131 + (TA)n Simple_repeat Simple_repeat 1 180 0 229 219 85 0 chr13 57455778 57455860 -62289038 + L1MC4 LINE L1 6615 6703 -1339 408 82 52 10 chr13 57455863 57455960 -62288938 + (TA)n Simple_repeat Simple_repeat 1 101 0 255 109 0 36 chr13 57455963 57456018 -62288880 - LTR66 LTR ERVL -171 439 387 25 0 0 0 chr13 57456727 57456752 -62288146 + AT_rich Low_complexity Low_complexity 1 25 0 275 312 0 13 chr13 57456874 57456951 -62287947 - MIR SINE MIR -105 157 82 346 318 69 12 chr13 57456985 57457158 -62287740 + L2 LINE L2 2477 2659 -655 2377 192 16 5 chr13 57457213 57457640 -62287258 + MLT2B1 LTR ERVL 3 434 -86 10217 166 34 41 chr13 57457641 57459635 -62285263 + ERVL-B1 LTR ERVL 3779 5758 -6 2242 209 46 28 chr13 57459635 57460089 -62284809 + MLT2B1 LTR ERVL 9 474 -46 879 17 26 0 chr13 57460089 57460206 -62284692 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 2242 209 46 28 chr13 57460206 57460254 -62284644 + MLT2B1 LTR ERVL 474 520 0 618 260 49 116 chr13 57460267 57460837 -62284061 + L2 LINE L2 2713 3313 0 1658 193 3 3 chr13 57461030 57461326 -62283572 + AluJb SINE Alu 1 296 -16 623 352 60 17 chr13 57461746 57462098 -62282800 - L2 LINE L2 0 3313 2947 434 371 96 30 chr13 57462154 57462561 -62282337 - L2 LINE L2 -434 2880 2447 268 278 111 71 chr13 57462732 57463596 -62281302 + L1M4 LINE L1 3705 4598 -1548 738 280 87 25 chr13 57463641 57464009 -62280889 + L1MC4 LINE L1 6698 7088 -954 770 207 7 0 chr13 57464309 57464454 -62280444 + FRAM SINE Alu 1 146 -30 252 0 0 0 chr13 57464533 57464561 -62280337 + (CA)n Simple_repeat Simple_repeat 2 29 0 328 127 0 28 chr13 57464576 57464647 -62280251 + (TA)n Simple_repeat Simple_repeat 2 70 0 461 47 16 0 chr13 57464649 57464713 -62280185 + (CA)n Simple_repeat Simple_repeat 2 66 0 1745 112 0 68 chr13 57464713 57465007 -62279891 - AluSx SINE Alu -38 274 1 226 281 129 0 chr13 57465322 57465500 -62279398 + L1MC4 LINE L1 7841 8041 -1 2410 176 31 0 chr13 57465543 57465997 -62278901 - L1 LINE L1 -914 5232 4765 25 51 0 0 chr13 57466027 57466066 -62278832 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr13 57466484 57466507 -62278391 + AT_rich Low_complexity Low_complexity 1 23 0 691 320 30 9 chr13 57466709 57466940 -62277958 - MIR SINE MIR -24 238 3 238 249 378 16 chr13 57468047 57468232 -62276666 + MIR SINE MIR 2 253 -9 786 239 43 14 chr13 57468369 57468578 -62276320 + MER20 DNA MER1_type 5 219 0 208 349 121 12 chr13 57468638 57468721 -62276177 - L2 LINE L2 -30 3242 3151 270 0 0 0 chr13 57471292 57471322 -62273576 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 3106 153 17 25 chr13 57474302 57474833 -62270065 + MER1A DNA MER1_type 1 527 0 393 330 126 38 chr13 57475114 57475511 -62269387 + L3 LINE CR1 982 1413 -164 250 157 0 0 chr13 57476302 57476353 -62268545 + L1MC4 LINE L1 6653 6703 -1339 328 275 0 42 chr13 57476359 57476503 -62268395 - L1MC4 LINE L1 -1339 6703 6614 784 274 11 0 chr13 57476556 57476735 -62268163 - MER63A DNA MER1_type -16 194 14 21 36 0 0 chr13 57477815 57477843 -62267055 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chr13 57478088 57478131 -62266767 + (TG)n Simple_repeat Simple_repeat 2 44 0 200 205 0 0 chr13 57478635 57478674 -62266224 + (TG)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr13 57479126 57479152 -62265746 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr13 57479192 57479217 -62265681 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr13 57479911 57479935 -62264963 + AT_rich Low_complexity Low_complexity 1 24 0 325 358 180 16 chr13 57480831 57481258 -62263640 - L2 LINE L2 -739 2575 2079 220 150 50 17 chr13 57481636 57481696 -62263202 + (TA)n Simple_repeat Simple_repeat 1 62 0 3371 151 19 62 chr13 57482211 57482669 -62262229 - L1MA4A LINE L1 -6 6297 5878 1538 108 0 5 chr13 57482669 57482883 -62262015 + AluSg/x SINE Alu 91 303 -9 3371 151 19 62 chr13 57482883 57483120 -62261778 - L1MA4A LINE L1 -425 5878 5632 1981 142 16 13 chr13 57483121 57483257 -62261641 + AluSx SINE Alu 1 135 -201 2500 62 0 0 chr13 57483257 57483562 -62261336 + AluY SINE Alu 1 305 -6 1981 142 16 13 chr13 57483562 57483760 -62261138 + AluSx SINE Alu 135 336 0 1960 152 2 74 chr13 57483761 57484298 -62260600 - L1MA4A LINE L1 -661 5642 5144 1877 164 15 1 chr13 57484307 57484611 -62260287 + THE1B LTR MaLR 66 364 0 12415 213 32 29 chr13 57484614 57485811 -62259087 - L1 LINE L1 -1000 5848 4655 1692 181 7 3 chr13 57485811 57486109 -62258789 - AluJo SINE Alu -13 299 1 12415 213 32 29 chr13 57486109 57489094 -62255804 - L1 LINE L1 -2193 4655 1642 1342 257 189 56 chr13 57489102 57489434 -62255464 - L1 LINE L1 -5868 981 695 216 0 0 0 chr13 57489434 57489458 -62255440 + (CAG)n Simple_repeat Simple_repeat 1 24 0 1342 257 189 56 chr13 57489458 57489852 -62255046 - L1 LINE L1 -6154 695 10 621 251 16 11 chr13 57490644 57490835 -62254063 + Charlie2 DNA MER1_type 1859 2050 -812 2028 257 31 21 chr13 57491955 57492473 -62252425 + MLT1F LTR MaLR 11 533 -9 631 280 79 5 chr13 57493071 57493260 -62251638 - MIR SINE MIR -6 256 54 19124 183 29 43 chr13 57493312 57494451 -62250447 - L1P3 LINE L1 -1481 5367 4214 2070 123 7 0 chr13 57494451 57494744 -62250154 - AluSp SINE Alu -18 295 1 19124 183 29 43 chr13 57494744 57498603 -62246295 - L1P3 LINE L1 -2634 4214 2 1400 183 63 22 chr13 57498610 57499037 -62245861 + Tigger7 DNA MER2_type 107 2487 0 260 261 7 35 chr13 57499049 57499132 -62245766 + (TA)n Simple_repeat Simple_repeat 2 81 -58 1752 175 10 14 chr13 57499132 57499424 -62245474 - AluJb SINE Alu -21 291 1 260 261 7 35 chr13 57499424 57499482 -62245416 + (TA)n Simple_repeat Simple_repeat 81 139 0 985 288 115 29 chr13 57499482 57499575 -62245323 + L1MC4 LINE L1 6615 6699 -1343 217 0 61 0 chr13 57499575 57499608 -62245290 + (TA)n Simple_repeat Simple_repeat 2 36 0 985 288 115 29 chr13 57499608 57499918 -62244980 + L1MC4 LINE L1 6699 6981 -1061 1555 167 62 69 chr13 57499918 57499957 -62244941 - MLT1B LTR MaLR -3 387 349 2213 74 0 23 chr13 57499957 57500267 -62244631 + AluY SINE Alu 1 303 -8 1555 167 62 69 chr13 57500267 57500617 -62244281 - MLT1B LTR MaLR -41 349 1 985 288 115 29 chr13 57500617 57501199 -62243699 + L1MC4 LINE L1 6981 7869 -173 373 348 38 45 chr13 57501614 57501901 -62242997 - L1ME3 LINE L1 -324 5838 5554 392 351 48 0 chr13 57502030 57502198 -62242700 - L1ME3 LINE L1 -1050 5096 4921 345 318 113 15 chr13 57502350 57502545 -62242353 + L1M4 LINE L1 4127 4340 -1806 343 189 27 81 chr13 57502607 57502718 -62242180 + L1MA8 LINE L1 6180 6284 -7 2221 114 3 0 chr13 57502859 57503165 -62241733 - AluSx SINE Alu -5 307 1 686 269 24 12 chr13 57504556 57504723 -62240175 - MER45A DNA AcHobo 0 178 10 2493 61 0 0 chr13 57505346 57505657 -62239241 + AluY SINE Alu 1 311 0 30 0 0 0 chr13 57505907 57505937 -62238961 + AT_rich Low_complexity Low_complexity 1 30 0 570 288 137 32 chr13 57506097 57506658 -62238240 - L1ME4a LINE L1 -1 6054 5439 272 266 0 21 chr13 57507221 57507315 -62237583 - L1ME4a LINE L1 -2203 3877 3786 26 30 0 0 chr13 57507828 57507861 -62237037 + AT_rich Low_complexity Low_complexity 1 33 0 68 13 0 0 chr13 57507878 57507953 -62236945 + AT_rich Low_complexity Low_complexity 1 75 0 409 44 125 0 chr13 57507958 57508118 -62236780 + (TA)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr13 57508121 57508144 -62236754 + AT_rich Low_complexity Low_complexity 1 23 0 281 195 87 0 chr13 57508146 57508295 -62236603 + (TATAA)n Simple_repeat Simple_repeat 2 163 0 25 0 0 0 chr13 57508515 57508540 -62236358 + AT_rich Low_complexity Low_complexity 1 25 0 391 294 114 16 chr13 57508668 57508852 -62236046 - MLT1J2 LTR MaLR -2 448 247 24 67 0 0 chr13 57508951 57508996 -62235902 + AT_rich Low_complexity Low_complexity 1 45 0 186 43 0 0 chr13 57511468 57511491 -62233407 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 937 276 12 12 chr13 57511499 57511749 -62233149 - MIR SINE MIR -11 251 2 950 269 92 35 chr13 57511937 57513054 -62231844 - L1ME LINE L1 -4320 1941 703 203 221 0 29 chr13 57513440 57513508 -62231390 + (TAA)n Simple_repeat Simple_repeat 1 66 0 23 0 0 0 chr13 57513561 57513584 -62231314 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr13 57514474 57514517 -62230381 + AT_rich Low_complexity Low_complexity 1 43 0 376 271 179 33 chr13 57516028 57516179 -62228719 + MER5A DNA MER1_type 11 183 -6 1096 309 63 34 chr13 57516280 57516834 -62228064 + L1MA6 LINE L1 12 581 -6208 12695 223 44 20 chr13 57516996 57522235 -62222663 + L1MA6 LINE L1 1121 6144 -743 927 153 6 6 chr13 57522248 57522405 -62222493 + FRAM SINE Alu 12 168 -8 3952 158 70 20 chr13 57522411 57523171 -62221727 + L1MA6 LINE L1 6142 6939 -3 36 0 0 0 chr13 57523178 57523214 -62221684 + AT_rich Low_complexity Low_complexity 1 36 0 1105 305 100 12 chr13 57525973 57526555 -62218343 - L2 LINE L2 -171 3142 2508 3439 34 25 0 chr13 57526555 57526994 -62217904 - L1PA5 LINE L1 -765 5381 4932 6313 38 3 11 chr13 57526994 57527778 -62217120 + L1PA5 LINE L1 5378 6154 0 749 265 143 7 chr13 57527790 57528077 -62216821 - L2 LINE L2 -834 2480 2155 207 146 49 0 chr13 57528481 57528522 -62216376 + (AATAG)n Simple_repeat Simple_repeat 4 46 0 281 224 158 0 chr13 57528686 57528762 -62216136 + MIR3 SINE MIR 121 208 0 1069 164 38 0 chr13 57529616 57529829 -62215069 + L1MA8 LINE L1 6070 6290 -1 373 295 36 7 chr13 57530192 57530331 -62214567 + MER112 DNA MER1_type 1 143 -117 212 59 29 0 chr13 57530350 57530384 -62214514 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 218 200 22 0 chr13 57531137 57531182 -62213716 - L2 LINE L2 0 3313 3268 380 235 68 23 chr13 57531563 57531695 -62213203 - LTR27 LTR ERV1 0 636 499 2285 215 31 15 chr13 57531748 57532288 -62212610 - LTR27 LTR ERV1 -140 496 1 242 252 43 101 chr13 57532384 57532523 -62212375 - MER5A DNA MER1_type -18 171 41 228 373 19 31 chr13 57532391 57532552 -62212346 + MER5A DNA MER1_type 31 189 0 * 382 281 100 52 chr13 57532671 57532902 -62211996 + MIR SINE MIR 20 261 -1 620 316 30 17 chr13 57532935 57533166 -62211732 + MIR SINE MIR 13 246 -16 865 230 93 80 chr13 57533906 57534532 -62210366 + MER52A LTR ERV1 270 738 -282 538 306 43 27 chr13 57534600 57534786 -62210112 + MER52A LTR ERV1 1221 1409 -346 542 271 0 54 chr13 57534857 57535023 -62209875 + MER52A LTR ERV1 1599 1755 0 258 293 198 22 chr13 57535056 57535278 -62209620 + L2 LINE L2 2609 2869 -445 300 333 94 83 chr13 57535389 57535454 -62209444 + L2 LINE L2 2994 3057 -215 1631 146 46 0 chr13 57535454 57535714 -62209184 + AluSx SINE Alu 21 292 -20 300 333 94 83 chr13 57535714 57535924 -62208974 + L2 LINE L2 3057 3272 0 679 159 0 0 chr13 57536943 57537050 -62207848 - FLAM_C SINE Alu -7 136 30 186 43 0 0 chr13 57537117 57537140 -62207758 + (T)n Simple_repeat Simple_repeat 1 23 0 199 360 85 20 chr13 57537172 57537325 -62207573 + L3 LINE CR1 1341 1503 -74 689 307 28 5 chr13 57538675 57538887 -62206011 - MER58A DNA MER1_type 0 224 8 22 56 0 0 chr13 57539777 57539813 -62205085 + AT_rich Low_complexity Low_complexity 1 36 0 587 354 111 27 chr13 57540346 57541191 -62203707 - L2 LINE L2 -61 3252 2328 486 61 0 0 chr13 57542188 57542254 -62202644 + (TC)n Simple_repeat Simple_repeat 1 66 0 360 0 0 0 chr13 57542254 57542294 -62202604 + (TA)n Simple_repeat Simple_repeat 1 40 0 1991 188 14 80 chr13 57542350 57542636 -62202262 + MSTB2 LTR MaLR 1 304 -153 3729 132 57 79 chr13 57542636 57543438 -62201460 + LTR1 LTR ERV1 1 785 0 1991 188 14 80 chr13 57543438 57543458 -62201440 + MSTB2 LTR MaLR 304 324 -133 1873 165 10 0 chr13 57543458 57543755 -62201143 - AluSx SINE Alu -12 300 1 1991 188 14 80 chr13 57543755 57543936 -62200962 + MSTB2 LTR MaLR 324 457 0 316 228 188 10 chr13 57544333 57544434 -62200464 - L1 LINE L1 -2739 3407 3289 1223 263 31 31 chr13 57544512 57544927 -62199971 - LTR52 LTR ERVL -3 418 4 182 37 37 0 chr13 57545056 57545083 -62199815 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 27 62 0 0 chr13 57545531 57545579 -62199319 + AT_rich Low_complexity Low_complexity 1 48 0 308 328 8 8 chr13 57545969 57546097 -62198801 - MER94 DNA DNA -5 129 2 250 315 36 18 chr13 57546191 57546302 -62198596 - MIR SINE MIR -103 159 47 1583 158 8 8 chr13 57546721 57546981 -62197917 + MER4E LTR ERV1 520 779 0 232 304 68 99 chr13 57548140 57548301 -62196597 - L2 LINE L2 -1 3271 3116 279 295 170 67 chr13 57549118 57549342 -62195556 - MIR SINE MIR -10 252 6 246 105 0 0 chr13 57549473 57549511 -62195387 + (ATG)n Simple_repeat Simple_repeat 2 39 0 663 306 15 0 chr13 57549520 57549716 -62195182 - MIR SINE MIR -15 247 49 3201 212 60 27 chr13 57550068 57550885 -62194013 - L1MA9 LINE L1 -40 6272 5429 180 241 74 0 chr13 57551107 57551161 -62193737 + L2 LINE L2 3256 3313 0 229 204 0 0 chr13 57551161 57551210 -62193688 + (TGAA)n Simple_repeat Simple_repeat 3 51 0 729 234 43 5 chr13 57551522 57551706 -62193192 - MER3 DNA MER1_type -18 191 1 1474 186 94 0 chr13 57552229 57552557 -62192341 + MER46B DNA MER2_type 3 236 0 222 241 78 103 chr13 57554794 57554910 -62189988 - L2 LINE L2 -2 3270 3158 2231 92 0 0 chr13 57555018 57555325 -62189573 - AluSx SINE Alu 0 307 1 207 0 0 0 chr13 57555331 57555354 -62189544 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2217 121 38 3 chr13 57555421 57555752 -62189146 - THE1A LTR MaLR -18 408 3 7607 170 52 46 chr13 57555754 57557393 -62187505 - MST-int LTR MaLR 0 1651 3 2131 101 38 71 chr13 57557395 57557762 -62187136 - THE1A LTR MaLR 0 355 1 219 385 88 5 chr13 57559217 57559409 -62185489 + MIR SINE MIR 53 260 -2 13498 146 37 6 chr13 57559683 57562026 -62182872 - Tigger1 DNA MER2_type -3 2415 1 1947 130 3 7 chr13 57563222 57563552 -62181346 + AluSq SINE Alu 1 329 0 33 0 0 0 chr13 57563618 57563651 -62181247 + AT_rich Low_complexity Low_complexity 1 33 0 200 189 0 0 chr13 57565127 57565164 -62179734 + (CA)n Simple_repeat Simple_repeat 2 38 0 24 32 0 0 chr13 57567110 57567141 -62177757 + AT_rich Low_complexity Low_complexity 1 31 0 308 340 19 13 chr13 57568187 57568346 -62176552 + MIR SINE MIR 88 247 -15 202 178 0 27 chr13 57568361 57568434 -62176464 + T-rich Low_complexity Low_complexity 2 72 0 803 180 86 99 chr13 57568446 57568668 -62176230 + MER20 DNA MER1_type 1 219 0 351 289 60 40 chr13 57569062 57569263 -62175635 + LTR40c LTR ERVL 167 371 -94 186 43 0 0 chr13 57572804 57572827 -62172071 + (CA)n Simple_repeat Simple_repeat 2 24 0 446 0 19 0 chr13 57572827 57572843 -62172055 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 446 0 19 0 chr13 57572843 57572897 -62172001 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1760 150 87 3 chr13 57572903 57573236 -62171662 - MER46B DNA MER2_type 0 236 1 16293 170 23 49 chr13 57574566 57576203 -62168695 + L1PA7 LINE L1 3 1682 -5167 3414 136 22 22 chr13 57576203 57576791 -62168107 - LTR4 LTR ERV1 0 588 1 16293 170 23 49 chr13 57576791 57577249 -62167649 + L1PA7 LINE L1 1682 2151 -4698 1501 211 7 10 chr13 57577249 57577547 -62167351 - AluJb SINE Alu -15 297 1 16293 170 23 49 chr13 57577547 57578298 -62166600 + L1PA7 LINE L1 2151 2740 -4109 3410 147 21 0 chr13 57578298 57578814 -62166084 - MER1A DNA MER1_type 0 527 1 16293 170 23 49 chr13 57578814 57579630 -62165268 + L1PA7 LINE L1 2740 3576 -3273 7338 189 56 21 chr13 57579623 57579696 -62165202 + L1PA7 LINE L1 4119 4188 -2681 * 180 0 0 0 chr13 57579696 57579716 -62165182 + (TAA)n Simple_repeat Simple_repeat 2 21 0 7338 189 56 21 chr13 57579716 57581477 -62163421 + L1PA7 LINE L1 4188 6055 -814 3258 81 0 5 chr13 57581477 57581921 -62162977 + L1PA7 LINE L1 6413 6854 -3 7338 189 56 21 chr13 57581921 57582353 -62162545 + L1PA7 LINE L1 6055 6470 -399 467 267 50 44 chr13 57583185 57583365 -62161533 + MIR SINE MIR 82 262 0 367 315 35 54 chr13 57585083 57585343 -62159555 + LTR33 LTR ERVL 21 275 -246 231 179 0 0 chr13 57585370 57585409 -62159489 + tRNA-Thr-ACT tRNA tRNA 2 40 -37 232 301 48 60 chr13 57585411 57585577 -62159321 + LTR33 LTR ERVL 345 508 -13 2026 187 48 34 chr13 57585707 57586137 -62158761 - MSTB1 LTR MaLR 0 432 2 507 359 28 42 chr13 57586509 57586796 -62158102 - LTR16C LTR ERVL -60 431 149 341 359 19 19 chr13 57587937 57588093 -62156805 + ERVL LTR ERVL 1531 1686 -4078 404 341 53 16 chr13 57588172 57588418 -62156480 + ERVL LTR ERVL 1744 1998 -3487 490 318 71 0 chr13 57588571 57588769 -62156129 + ERVL LTR ERVL 2292 2503 -3261 728 309 83 17 chr13 57588794 57589202 -62155696 + LTR16A1 LTR ERVL 10 444 -13 829 350 63 20 chr13 57589402 57589891 -62155007 + ERVL LTR ERVL 4518 5027 -737 2026 101 19 35 chr13 57590176 57590189 -62154709 - AluSx SINE Alu 0 312 300 240 35 0 0 chr13 57590189 57590218 -62154680 + (TC)n Simple_repeat Simple_repeat 2 30 0 2026 101 19 35 chr13 57590218 57590521 -62154377 - AluSx SINE Alu -12 300 1 7150 142 44 24 chr13 57591044 57592319 -62152579 - HSMAR2 DNA Mariner -1 1301 2 26 0 0 0 chr13 57592557 57592583 -62152315 + AT_rich Low_complexity Low_complexity 1 26 0 1485 188 16 43 chr13 57592759 57593063 -62151835 + AluJo SINE Alu 1 296 -16 242 287 17 44 chr13 57593523 57593704 -62151194 + CT-rich Low_complexity Low_complexity 2 177 0 220 232 36 0 chr13 57594335 57594391 -62150507 + (CTA)n Simple_repeat Simple_repeat 1 58 0 27 0 0 0 chr13 57594952 57594979 -62149919 + AT_rich Low_complexity Low_complexity 1 27 0 481 118 0 13 chr13 57594979 57595055 -62149843 - tRNA-Glu-GAG tRNA tRNA 0 75 1 7443 33 1 1 chr13 57595061 57596205 -62148693 + L1PA4 LINE L1 5009 6152 -3 29 28 0 0 chr13 57596306 57596342 -62148556 + AT_rich Low_complexity Low_complexity 1 36 0 213 132 0 0 chr13 57597048 57597086 -62147812 + (CTA)n Simple_repeat Simple_repeat 1 38 0 237 65 0 0 chr13 57597165 57597196 -62147702 + (TATG)n Simple_repeat Simple_repeat 4 34 0 21 0 0 0 chr13 57597222 57597243 -62147655 + AT_rich Low_complexity Low_complexity 1 21 0 2321 271 48 34 chr13 57597264 57598128 -62146770 + L1M4c LINE L1 1001 1851 -4531 2360 93 3 0 chr13 57598128 57598428 -62146470 + AluSp SINE Alu 1 301 -12 2321 271 48 34 chr13 57598428 57598753 -62146145 + L1M4c LINE L1 1851 2170 -4212 2177 88 0 0 chr13 57598753 57599025 -62145873 + AluSc SINE Alu 38 309 0 2321 271 48 34 chr13 57599025 57599314 -62145584 + L1M4c LINE L1 2170 2572 -3810 2209 202 56 0 chr13 57599321 57599436 -62145462 + L1MB1 LINE L1 5661 5768 -400 381 93 0 0 chr13 57599436 57599490 -62145408 + (TA)n Simple_repeat Simple_repeat 1 54 0 2209 202 56 0 chr13 57599490 57599855 -62145043 + L1MB1 LINE L1 5768 6168 0 22 0 0 0 chr13 57600599 57600621 -62144277 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr13 57601784 57601836 -62143062 + AT_rich Low_complexity Low_complexity 1 52 0 1431 196 55 149 chr13 57601999 57602568 -62142330 + MLT2B3 LTR ERVL 1 622 68 402 21 0 0 chr13 57602568 57602615 -62142283 + (CA)n Simple_repeat Simple_repeat 1 47 0 198 0 0 0 chr13 57602614 57602636 -62142262 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 1431 196 55 149 chr13 57602615 57602669 -62142229 + MLT2B3 LTR ERVL 621 546 -8 22 0 0 0 chr13 57602794 57602816 -62142082 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr13 57603106 57603136 -62141762 + AT_rich Low_complexity Low_complexity 1 30 0 246 62 0 0 chr13 57603229 57603261 -62141637 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 267 31 0 0 chr13 57603260 57603292 -62141606 + (GA)n Simple_repeat Simple_repeat 1 32 0 13122 161 19 26 chr13 57603745 57603789 -62141109 + Tigger1 DNA MER2_type 14 57 -2361 2028 122 34 0 chr13 57603789 57604083 -62140815 - AluY SINE Alu -7 304 1 13122 161 19 26 chr13 57604083 57606240 -62138658 + Tigger1 DNA MER2_type 57 2198 -220 1895 160 3 13 chr13 57606240 57606553 -62138345 - AluSx SINE Alu -1 311 2 13122 161 19 26 chr13 57606553 57606766 -62138132 + Tigger1 DNA MER2_type 2198 2411 -7 569 235 25 0 chr13 57607604 57607723 -62137175 + FLAM_A SINE Alu 4 125 -8 39 60 0 0 chr13 57608493 57608560 -62136338 + AT_rich Low_complexity Low_complexity 1 67 0 618 314 16 48 chr13 57608683 57608931 -62135967 - MIR SINE MIR 0 262 23 207 120 114 0 chr13 57610424 57610582 -62134316 + (TA)n Simple_repeat Simple_repeat 1 176 0 23 54 0 0 chr13 57611810 57611847 -62133051 + AT_rich Low_complexity Low_complexity 1 37 0 7889 86 5 7 chr13 57613232 57614305 -62130593 - MER11C LTR ERVK 0 1071 1 6012 110 8 11 chr13 57614364 57616046 -62128852 + L1PA12 LINE L1 4469 6166 -2 391 282 41 6 chr13 57616839 57617009 -62127889 - L1MEd LINE L1 -4971 1148 973 2241 120 0 10 chr13 57617728 57618036 -62126862 - AluSx SINE Alu -7 305 1 1151 239 19 69 chr13 57619240 57619617 -62125281 - MLT1E1 LTR MaLR 0 654 297 336 211 14 14 chr13 57619641 57619712 -62125186 - MLT1E1 LTR MaLR -541 113 43 2399 78 0 0 chr13 57620559 57620853 -62124045 + AluSc SINE Alu 1 294 -15 23 0 0 0 chr13 57621293 57621316 -62123582 + AT_rich Low_complexity Low_complexity 1 23 0 338 138 35 11 chr13 57621499 57621586 -62123312 + GA-rich Low_complexity Low_complexity 3 91 0 431 331 100 56 chr13 57621671 57622203 -62122695 + L1MEd LINE L1 524 1078 -5041 1354 330 130 49 chr13 57624061 57625661 -62119237 - L2 LINE L2 -370 2944 1216 380 271 43 105 chr13 57627703 57628054 -62116844 - L1ME LINE L1 -359 5811 5483 364 277 123 68 chr13 57628179 57628576 -62116322 - L1ME LINE L1 -824 5322 4904 339 239 0 0 chr13 57628836 57628907 -62115991 + MIR SINE MIR 20 90 -172 236 213 33 0 chr13 57629023 57629084 -62115814 - L1MC4 LINE L1 -1340 6702 6640 407 281 23 74 chr13 57629094 57629311 -62115587 + Charlie2 DNA MER1_type 113 318 -2464 1849 242 39 74 chr13 57629315 57629501 -62115397 + Charlie2 DNA MER1_type 1865 2056 -806 2778 236 29 20 chr13 57629501 57630183 -62114715 + MER76 LTR ERV 1 688 0 1849 242 39 74 chr13 57630183 57631029 -62113869 + Charlie2 DNA MER1_type 2056 2861 -1 544 269 110 16 chr13 57631361 57631757 -62113141 - LTR33 LTR ERVL -4 517 59 23 0 0 0 chr13 57631962 57631985 -62112913 + AT_rich Low_complexity Low_complexity 1 23 0 1967 170 20 3 chr13 57632194 57632536 -62112362 - MER7A DNA MER2_type 0 346 1 584 137 218 19 chr13 57632537 57632748 -62112150 - MER33 DNA MER1_type -38 286 34 1866 96 0 26 chr13 57633051 57633322 -62111576 + AluSc SINE Alu 36 299 -10 1285 226 3 0 chr13 57633438 57633725 -62111173 - L1MB7 LINE L1 -16 6168 5881 1198 187 49 16 chr13 57633727 57633973 -62110925 - MSTB LTR MaLR -2 424 171 556 217 19 0 chr13 57633984 57634090 -62110808 + MSTB LTR MaLR 83 190 -236 2017 243 95 39 chr13 57634090 57634943 -62109955 - L1ME LINE L1 -1643 4503 3603 231 36 0 0 chr13 57635002 57635030 -62109868 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1314 191 62 10 chr13 57635643 57635931 -62108967 - AluJb SINE Alu -7 305 3 193 333 118 43 chr13 57636895 57636988 -62107910 - L2 LINE L2 -20 3252 3153 395 221 0 9 chr13 57638813 57638926 -62105972 + (TG)n Simple_repeat Simple_repeat 2 113 0 346 255 0 39 chr13 57638926 57639028 -62105870 + L1MC4 LINE L1 6614 6711 -1331 356 216 43 11 chr13 57639395 57639576 -62105322 + L1MA9 LINE L1 6008 6290 -22 391 296 17 0 chr13 57640451 57640566 -62104332 + L2 LINE L2 3192 3308 -5 351 0 0 0 chr13 57640696 57640735 -62104163 + (TA)n Simple_repeat Simple_repeat 2 40 0 2242 114 0 0 chr13 57640735 57641043 -62103855 - AluSg SINE Alu -1 309 2 292 291 118 16 chr13 57641615 57641742 -62103156 + MIR SINE MIR 52 191 -71 647 74 0 11 chr13 57642995 57643090 -62101808 + (TA)n Simple_repeat Simple_repeat 2 95 0 1596 171 100 0 chr13 57643773 57644054 -62100844 - MER1B DNA MER1_type 0 339 31 747 249 53 42 chr13 57645826 57646111 -62098787 - L1MB7 LINE L1 -415 5751 5464 996 266 145 13 chr13 57646130 57646674 -62098224 - L1MB7 LINE L1 -1302 4844 4229 290 281 54 0 chr13 57646694 57646918 -62097980 - L1MB7 LINE L1 -1889 4257 3878 * 581 351 53 39 chr13 57646915 57647706 -62097192 - L1MEc LINE L1 -5488 908 107 402 255 90 43 chr13 57647803 57648125 -62096773 + L1M4 LINE L1 5045 5381 -765 25 83 0 0 chr13 57648365 57648425 -62096473 + AT_rich Low_complexity Low_complexity 1 60 0 402 397 24 27 chr13 57649713 57650008 -62094890 - L2 LINE L2 -31 3241 2948 194 128 26 0 chr13 57650208 57650247 -62094651 + (TAA)n Simple_repeat Simple_repeat 1 40 0 204 330 62 10 chr13 57650305 57650402 -62094496 - MIR SINE MIR -61 147 46 282 250 62 16 chr13 57650785 57650913 -62093985 + MER103 DNA DNA 21 154 -12 27 0 0 0 chr13 57651054 57651081 -62093817 + AT_rich Low_complexity Low_complexity 1 27 0 302 296 108 52 chr13 57651596 57651809 -62093089 + MLT1L LTR MaLR 306 530 -85 682 235 95 68 chr13 57652145 57652355 -62092543 + L1MD1 LINE L1 20 240 -6300 2108 113 10 3 chr13 57652355 57652665 -62092233 + AluSp SINE Alu 1 312 -1 682 235 95 68 chr13 57652665 57652718 -62092180 + L1MD1 LINE L1 240 290 -6250 * 1747 274 65 9 chr13 57652703 57653390 -62091508 + L1MD1 LINE L1 2598 3323 -3217 517 207 0 0 chr13 57653380 57653491 -62091407 + L1MD1 LINE L1 5780 5890 -746 * 431 157 56 45 chr13 57653527 57653601 -62091297 - Tigger7 DNA MER2_type -8 2479 2402 1523 206 68 54 chr13 57653601 57654028 -62090870 + Tigger2a DNA MER2_type 1 433 -1 431 157 56 45 chr13 57654028 57654042 -62090856 - Tigger7 DNA MER2_type -85 2402 2390 1098 231 86 4 chr13 57654054 57654297 -62090601 - Tigger7 DNA MER2_type -470 263 1 2983 198 47 23 chr13 57654297 57654984 -62089914 + L1MD1 LINE L1 5925 6627 -9 571 263 27 0 chr13 57655371 57655557 -62089341 - L1M4c LINE L1 -4188 2458 2268 3238 239 61 61 chr13 57655589 57657430 -62087468 - L1M4c LINE L1 -4481 2165 392 228 328 195 16 chr13 57657783 57657911 -62086987 - MIR SINE MIR -84 178 28 1747 149 127 0 chr13 57658458 57658766 -62086132 + MER7A DNA MER2_type 2 346 0 21 89 0 0 chr13 57659198 57659254 -62085644 + AT_rich Low_complexity Low_complexity 1 56 0 1119 182 37 37 chr13 57660703 57660802 -62084096 - AluJb SINE Alu -98 214 116 2048 122 55 50 chr13 57660802 57661164 -62083734 - THE1B LTR MaLR 0 364 1 11106 104 6 11 chr13 57661164 57662752 -62082146 - THE1B-int LTR MaLR 0 1580 1 1935 142 73 14 chr13 57662752 57663096 -62081802 - THE1B LTR MaLR 0 364 1 1119 182 37 37 chr13 57663096 57663208 -62081690 - AluJb SINE Alu -193 119 1 1048 276 23 46 chr13 57663506 57663857 -62081041 + L1MD3 LINE L1 6496 6846 -1149 21 36 0 0 chr13 57664239 57664267 -62080631 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 57664378 57664401 -62080497 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr13 57664634 57664666 -62080232 + AT_rich Low_complexity Low_complexity 1 32 0 181 275 62 25 chr13 57664704 57664784 -62080114 - MIR SINE MIR 0 262 180 5011 48 0 0 chr13 57664815 57665425 -62079473 - L1PA5 LINE L1 -3 6151 5542 548 45 0 0 chr13 57665425 57665491 -62079407 - L1P2 LINE L1 -555 5599 5534 216 341 141 15 chr13 57665494 57665629 -62079269 - MIR SINE MIR -108 154 3 257 329 18 18 chr13 57665847 57666017 -62078881 + MER41B LTR ERV1 260 429 -206 4424 200 21 19 chr13 57666274 57667673 -62077225 - L1MA7 LINE L1 0 6291 4888 324 355 76 10 chr13 57668366 57668563 -62076335 + MIR SINE MIR 6 215 -47 28 0 0 0 chr13 57671313 57671341 -62073557 + AT_rich Low_complexity Low_complexity 1 28 0 180 349 24 36 chr13 57671350 57671433 -62073465 - L2 LINE L2 -46 3267 3186 28 86 0 0 chr13 57671586 57671656 -62073242 + AT_rich Low_complexity Low_complexity 1 70 0 3739 167 4 16 chr13 57671657 57672364 -62072534 - L1PA3 LINE L1 -838 5308 4610 1019 111 8 3 chr13 57672362 57672539 -62072359 + L1PA3 LINE L1 5307 5490 -678 * 2177 18 0 0 chr13 57672537 57672908 -62071990 - L1P1 LINE L1 -658 5497 5127 5114 25 0 0 chr13 57672908 57673493 -62071405 + L1PA3 LINE L1 5563 6155 0 4565 109 27 0 chr13 57673495 57674167 -62070731 + L1PA10 LINE L1 5476 6165 -3 517 333 40 18 chr13 57674362 57674584 -62070314 + MIR SINE MIR 36 262 0 485 289 96 0 chr13 57675825 57675991 -62068907 + MIR SINE MIR 78 259 -3 1830 197 14 14 chr13 57676730 57677095 -62067803 + MLT1A1 LTR MaLR 1 365 0 210 233 0 0 chr13 57677236 57677279 -62067619 + CT-rich Low_complexity Low_complexity 1 43 0 201 225 0 0 chr13 57677278 57677318 -62067580 + (CA)n Simple_repeat Simple_repeat 1 40 0 * 1273 145 149 14 chr13 57677344 57677626 -62067272 + MER4A LTR ERV1 1 320 -344 574 191 252 30 chr13 57677696 57677939 -62066959 + MER4C LTR ERV1 159 656 -8 1900 162 32 35 chr13 57679061 57679407 -62065491 - THE1B LTR MaLR -19 345 1 182 313 84 12 chr13 57679407 57679490 -62065408 + L2 LINE L2 3174 3262 -10 223 233 0 39 chr13 57679592 57679637 -62065261 + GA-rich Low_complexity Low_complexity 3 48 -53 655 194 0 16 chr13 57679637 57679761 -62065137 + FLAM_A SINE Alu 2 123 -10 223 233 0 39 chr13 57679761 57679818 -62065080 + GA-rich Low_complexity Low_complexity 48 101 0 2233 112 52 3 chr13 57682298 57682645 -62062253 - THE1B LTR MaLR 0 364 1 8178 135 40 10 chr13 57682645 57682812 -62062086 - THE1B-int LTR MaLR 0 1580 1419 1960 137 18 80 chr13 57682812 57683200 -62061698 - THE1B LTR MaLR 0 364 1 8178 135 40 10 chr13 57683200 57684565 -62060333 - THE1B-int LTR MaLR -161 1419 3 2554 88 17 11 chr13 57684572 57684924 -62059974 - THE1B LTR MaLR -10 354 1 312 274 27 0 chr13 57685042 57685115 -62059783 + MIR SINE MIR 69 143 -65 315 0 0 0 chr13 57685213 57685248 -62059650 + (CA)n Simple_repeat Simple_repeat 2 36 0 1343 194 17 36 chr13 57685388 57685825 -62059073 + L1M1 LINE L1 5071 5506 -744 23 54 0 0 chr13 57686028 57686065 -62058833 + AT_rich Low_complexity Low_complexity 1 37 0 384 91 0 0 chr13 57687255 57687310 -62057588 - MLT2A1 LTR ERVL 0 444 390 644 323 80 43 chr13 57688071 57688532 -62056366 - L2 LINE L2 -5 3308 2831 28 29 0 0 chr13 57689702 57689737 -62055161 + AT_rich Low_complexity Low_complexity 1 35 0 261 0 0 0 chr13 57690486 57690515 -62054383 + (TA)n Simple_repeat Simple_repeat 1 29 0 186 118 0 0 chr13 57690637 57690671 -62054227 + (TTA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr13 57690677 57690699 -62054199 + AT_rich Low_complexity Low_complexity 1 22 0 33 56 0 0 chr13 57691251 57691305 -62053593 + AT_rich Low_complexity Low_complexity 1 54 0 328 316 107 12 chr13 57691340 57691508 -62053390 - MIR SINE MIR -74 188 5 255 356 88 42 chr13 57692232 57692448 -62052450 + MIR SINE MIR 1 226 -36 269 307 124 15 chr13 57692573 57692710 -62052188 + MLT1I LTR MaLR 207 358 -51 318 50 0 0 chr13 57693660 57693700 -62051198 + (TA)n Simple_repeat Simple_repeat 2 41 0 10002 179 25 49 chr13 57694153 57695997 -62048901 + L1MA5 LINE L1 3038 4924 -1376 2392 84 3 3 chr13 57695997 57696307 -62048591 - AluY SINE Alu -1 310 1 10002 179 25 49 chr13 57696307 57696487 -62048411 + L1MA5 LINE L1 4924 5107 -1193 4836 102 9 9 chr13 57696487 57697185 -62047713 + L1PA14 LINE L1 5462 6159 -2 10002 179 25 49 chr13 57697185 57697206 -62047692 + L1MA5 LINE L1 5107 5127 -1173 1963 129 7 0 chr13 57697206 57697484 -62047414 + AluSq SINE Alu 1 280 -33 10002 179 25 49 chr13 57697484 57698722 -62046176 + L1MA5 LINE L1 5127 6300 0 21 57 0 0 chr13 57700263 57700298 -62044600 + AT_rich Low_complexity Low_complexity 1 35 0 23 86 0 0 chr13 57700565 57700623 -62044275 + AT_rich Low_complexity Low_complexity 1 58 0 36 23 0 0 chr13 57700945 57700988 -62043910 + AT_rich Low_complexity Low_complexity 1 43 0 21 89 0 0 chr13 57701041 57701097 -62043801 + AT_rich Low_complexity Low_complexity 1 56 0 683 100 0 0 chr13 57701917 57702007 -62042891 + 5S rRNA rRNA 1 90 -31 950 64 0 0 chr13 57702033 57702158 -62042740 - AluY SINE Alu 0 311 187 7908 222 22 37 chr13 57702521 57704665 -62040233 - L1MC3 LINE L1 0 8065 5890 338 74 19 0 chr13 57704665 57704719 -62040179 + (TG)n Simple_repeat Simple_repeat 1 55 0 7908 222 22 37 chr13 57704719 57706186 -62038712 - L1MC3 LINE L1 -2175 5890 3060 282 246 0 0 chr13 57706191 57706248 -62038650 - L1MC3 LINE L1 -5797 629 573 2669 192 78 7 chr13 57706251 57706799 -62038099 - L1MC3 LINE L1 -5811 615 29 930 188 0 0 chr13 57707725 57707869 -62037029 - AluSg/x SINE Alu -24 286 143 1141 198 103 15 chr13 57707995 57708258 -62036640 - AluJo SINE Alu -16 286 1 429 251 79 61 chr13 57708344 57708623 -62036275 - HAL1 LINE L1 -110 2397 2114 273 271 79 28 chr13 57708755 57708969 -62035929 - HAL1 LINE L1 -1232 1275 1051 13982 93 7 1 chr13 57709017 57711753 -62033145 - L1PA7 LINE L1 -13 6141 3393 554 338 63 23 chr13 57711805 57712399 -62032499 - HAL1 LINE L1 -1467 1040 404 873 106 8 0 chr13 57715832 57715964 -62028934 + L1PA15 LINE L1 6026 6158 -7 3966 24 0 0 chr13 57716395 57716859 -62028039 - L1PA3 LINE L1 0 6155 5692 3154 19 0 0 chr13 57716859 57717220 -62027678 + L1PA3 LINE L1 5360 5720 -435 192 77 0 0 chr13 57718120 57718146 -62026752 + (A)n Simple_repeat Simple_repeat 1 26 0 27 87 0 0 chr13 57719460 57719529 -62025369 + AT_rich Low_complexity Low_complexity 1 69 0 2107 84 0 3 chr13 57719949 57720281 -62024617 - AluY SINE Alu 0 331 1 24 32 0 0 chr13 57721002 57721033 -62023865 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr13 57721349 57721391 -62023507 + AT_rich Low_complexity Low_complexity 1 42 0 2105 92 0 3 chr13 57721397 57721726 -62023172 + AluY SINE Alu 1 328 0 750 289 90 65 chr13 57722051 57722528 -62022370 - LTR16C LTR ERVL 0 491 3 255 297 127 8 chr13 57722817 57722935 -62021963 + MLT1I LTR MaLR 1 132 -277 22 0 0 0 chr13 57725204 57725226 -62019672 + AT_rich Low_complexity Low_complexity 1 22 0 203 298 0 0 chr13 57725348 57725395 -62019503 - L2 LINE L2 -9 3263 3217 241 347 145 8 chr13 57725552 57725800 -62019098 - L2 LINE L2 -6 3307 3026 21 0 0 0 chr13 57726075 57726096 -62018802 + AT_rich Low_complexity Low_complexity 1 21 0 2756 139 15 18 chr13 57726306 57726760 -62018138 + MER31A LTR ERV1 2 454 -31 1302 198 45 100 chr13 57726869 57727288 -62017610 + MER31A-int LTR ERV1 13 408 -4528 920 183 85 111 chr13 57727446 57727823 -62017075 + MER31A-int LTR ERV1 883 1249 -3687 716 167 8 24 chr13 57727826 57727952 -62016946 + FLAM_C SINE Alu 2 125 -8 524 209 57 82 chr13 57727978 57728260 -62016638 + MER31A-int LTR ERV1 1239 1513 -3423 285 263 36 51 chr13 57728398 57728535 -62016363 + LOR1-int LTR ERV1 1339 1473 -6647 1727 186 0 3 chr13 57728666 57728957 -62015941 + AluJb SINE Alu 1 290 -22 196 175 0 25 chr13 57728958 57729038 -62015860 + (TA)n Simple_repeat Simple_repeat 1 78 0 318 173 0 37 chr13 57729061 57729142 -62015756 + LOR1-int LTR ERV1 4201 4278 -3842 4001 164 21 28 chr13 57729143 57729898 -62015000 + Tigger2 DNA MER2_type 2 751 -1967 944 230 71 8 chr13 57729962 57730201 -62014697 + Tigger2 DNA MER2_type 2465 2718 0 9272 196 66 40 chr13 57730201 57732620 -62012278 + LOR1-int LTR ERV1 2406 4886 -50 1516 160 0 75 chr13 57734787 57735118 -62009780 - AluSx SINE Alu -6 306 1 207 146 0 0 chr13 57736883 57736924 -62007974 + (CA)n Simple_repeat Simple_repeat 2 42 0 5680 126 96 9 chr13 57737036 57738522 -62006376 - L1PBa LINE L1 -3394 3468 1855 549 255 28 7 chr13 57738574 57738719 -62006179 + MIR SINE MIR 109 256 -6 2704 133 13 19 chr13 57739368 57739843 -62005055 - L1MA8 LINE L1 -226 6065 5594 1463 252 32 14 chr13 57739840 57740332 -62004566 + L1M4 LINE L1 4384 4884 -1262 * 8339 74 17 10 chr13 57740339 57741878 -62003020 + L1P3 LINE L1 4206 5754 -400 296 298 0 21 chr13 57743052 57743146 -62001752 + MER5A DNA MER1_type 76 167 -22 243 0 0 0 chr13 57744332 57744359 -62000539 + (T)n Simple_repeat Simple_repeat 1 27 0 7102 18 13 2 chr13 57744712 57745545 -61999353 - L1PA3 LINE L1 0 6155 5314 2619 23 0 0 chr13 57745796 57746101 -61998797 - L1P1 LINE L1 -458 5697 5393 3725 12 0 0 chr13 57746101 57746526 -61998372 + L1PA2 LINE L1 5731 6155 0 256 348 58 34 chr13 57746566 57746773 -61998125 + MIR SINE MIR 3 214 -48 1003 257 19 23 chr13 57747492 57747753 -61997145 - MIR SINE MIR 0 262 3 213 159 0 0 chr13 57748897 57748941 -61995957 + (TG)n Simple_repeat Simple_repeat 2 45 0 259 203 62 16 chr13 57750218 57750282 -61994616 - MER5C DNA MER1_type -257 67 1 42 20 0 0 chr13 57750395 57750444 -61994454 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr13 57751200 57751223 -61993675 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2160 104 14 0 chr13 57751226 57751515 -61993383 - AluSc SINE Alu -16 293 1 1310 234 3 17 chr13 57752699 57752989 -61991909 + AluJo SINE Alu 1 286 -26 33 0 0 0 chr13 57753283 57753316 -61991582 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr13 57753455 57753483 -61991415 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 57753952 57753980 -61990918 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 57754988 57755017 -61989881 + AT_rich Low_complexity Low_complexity 1 29 0 295 160 66 38 chr13 57755126 57755232 -61989666 + L1ME1 LINE L1 5137 5245 -901 232 315 0 11 chr13 57755197 57755289 -61989609 - L1MC4 LINE L1 -1326 6716 6626 * 2677 251 59 14 chr13 57755284 57756152 -61988746 + L1ME1 LINE L1 5238 6147 -19 548 72 0 12 chr13 57756725 57756808 -61988090 + (TG)n Simple_repeat Simple_repeat 2 83 0 185 389 0 11 chr13 57758688 57758778 -61986120 - L2 LINE L2 -4 3268 3180 292 313 62 28 chr13 57761746 57761890 -61983008 - L2 LINE L2 -10 3303 3155 221 356 0 14 chr13 57762287 57762360 -61982538 + MIR SINE MIR 70 141 -67 325 283 50 10 chr13 57762364 57762463 -61982435 - L2 LINE L2 -8 3305 3203 23 92 0 0 chr13 57762476 57762541 -61982357 + AT_rich Low_complexity Low_complexity 1 65 0 252 289 36 12 chr13 57762768 57762851 -61982047 + L2 LINE L2 3221 3305 -8 23 0 0 0 chr13 57762929 57762952 -61981946 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr13 57763041 57763076 -61981822 + AT_rich Low_complexity Low_complexity 1 35 0 1966 111 0 21 chr13 57763535 57763848 -61981050 + AluSx SINE Alu 2 308 0 219 320 13 0 chr13 57763903 57763978 -61980920 - MIR SINE MIR -65 143 68 183 80 0 0 chr13 57765052 57765077 -61979821 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1183 298 72 52 chr13 57765171 57765822 -61979076 + MER69 DNA AcHobo 31 694 -532 522 197 113 0 chr13 57765844 57765986 -61978912 + MER69 DNA AcHobo 1651 1808 -718 1136 184 26 85 chr13 57765986 57766291 -61978607 + L1MA10 LINE L1 6048 6334 0 272 305 61 0 chr13 57766375 57766506 -61978392 + MER69 DNA AcHobo 1881 2019 -507 2516 128 46 14 chr13 57766553 57766968 -61977930 + MSTA LTR MaLR 1 428 0 8558 175 37 12 chr13 57766968 57768579 -61976319 + MSTA-int LTR MaLR 1 1651 0 2394 142 37 17 chr13 57768579 57768988 -61975910 + MSTA LTR MaLR 1 417 -11 21 0 0 0 chr13 57769084 57769105 -61975793 + AT_rich Low_complexity Low_complexity 1 21 0 243 343 19 19 chr13 57769208 57769316 -61975582 + L3 LINE CR1 1465 1572 -5 27 0 0 0 chr13 57769403 57769430 -61975468 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr13 57770817 57770842 -61974056 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr13 57771794 57771837 -61973061 + AT_rich Low_complexity Low_complexity 1 43 0 751 307 75 38 chr13 57772040 57772519 -61972379 + MER77 LTR ERV1 92 588 -17 21 57 0 0 chr13 57773145 57773180 -61971718 + AT_rich Low_complexity Low_complexity 1 35 0 220 211 0 42 chr13 57774530 57774601 -61970297 + T-rich Low_complexity Low_complexity 2 69 0 31 0 0 0 chr13 57776636 57776667 -61968231 + AT_rich Low_complexity Low_complexity 1 31 0 193 350 90 23 chr13 57776819 57776996 -61967902 - MIR SINE MIR -59 203 15 644 204 0 8 chr13 57778472 57778604 -61966294 - FRAM SINE Alu -8 168 38 29 70 0 0 chr13 57779398 57779455 -61965443 + AT_rich Low_complexity Low_complexity 1 57 0 948 286 62 80 chr13 57779745 57779901 -61964997 - L1ME3A LINE L1 -6 6164 6007 2029 120 3 20 chr13 57779901 57780201 -61964697 + AluSx SINE Alu 3 297 -15 948 286 62 80 chr13 57780201 57780519 -61964379 - L1ME3A LINE L1 -163 6007 5705 2166 118 40 37 chr13 57780519 57780893 -61964005 + THE1C LTR MaLR 1 375 0 948 286 62 80 chr13 57780893 57781170 -61963728 - L1ME3A LINE L1 -465 5705 5425 641 312 72 18 chr13 57781149 57781706 -61963192 - L1ME3A LINE L1 -1023 5123 4537 * 390 260 59 29 chr13 57781812 57782016 -61962882 - L1ME3A LINE L1 -1787 4359 4150 351 328 27 21 chr13 57782050 57782236 -61962662 - L1ME3A LINE L1 -1983 4163 3977 741 283 88 39 chr13 57782247 57782921 -61961977 - L1ME3A LINE L1 -2292 3854 3148 1315 332 61 34 chr13 57782957 57783761 -61961137 + HERV16 LTR ERVL 2296 3085 -1911 978 348 68 45 chr13 57783892 57784866 -61960032 + HERV16 LTR ERVL 3282 4277 -1487 500 341 59 44 chr13 57784842 57785232 -61959666 + HERV16 LTR ERVL 4448 4843 -921 * 304 206 0 16 chr13 57785398 57785461 -61959437 + HERV16 LTR ERVL 4618 4679 -317 444 375 63 17 chr13 57785766 57786115 -61958783 + LTR16A LTR ERVL 1 365 -85 1385 172 13 110 chr13 57786444 57786683 -61958215 - MLT1A2 LTR MaLR 0 374 186 1403 184 0 83 chr13 57786683 57787010 -61957888 - AluJo SINE Alu -12 300 1 1385 172 13 110 chr13 57787010 57787160 -61957738 - MLT1A2 LTR MaLR -188 186 23 636 265 85 83 chr13 57787406 57787946 -61956952 - HAL1 LINE L1 -207 2300 1760 242 305 0 12 chr13 57787966 57788048 -61956850 - MLT-int LTR MaLR -1634 101 21 2231 61 30 7 chr13 57788297 57788592 -61956306 + AluY SINE Alu 4 305 -6 2385 132 52 8 chr13 57788721 57789123 -61955775 + MSTA LTR MaLR 1 420 -8 437 299 129 14 chr13 57789456 57789673 -61955225 - MIR SINE MIR -1 261 20 334 319 42 58 chr13 57791393 57791584 -61953314 + LTR16A LTR ERVL 1 188 -262 236 319 54 36 chr13 57792068 57792234 -61952664 + MIR SINE MIR 81 249 -13 231 351 75 0 chr13 57793680 57793774 -61951124 - MIR SINE MIR -137 125 25 841 170 0 66 chr13 57794273 57794485 -61950413 - L1MA9 LINE L1 -10 6302 6105 1098 199 0 13 chr13 57794487 57794718 -61950180 + L1MA9 LINE L1 5891 6118 -194 261 274 49 20 chr13 57795218 57795320 -61949578 + HAL1b LINE L1 591 695 -653 229 254 0 17 chr13 57795326 57795385 -61949513 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 363 285 110 62 chr13 57795526 57795898 -61949000 + HAL1b LINE L1 890 1279 -69 745 107 36 0 chr13 57795914 57796026 -61948872 + FLAM_C SINE Alu 1 116 -17 29 47 0 0 chr13 57796058 57796101 -61948797 + AT_rich Low_complexity Low_complexity 1 43 0 378 292 17 8 chr13 57796465 57796585 -61948313 - L2 LINE L2 -1 3312 3192 2000 179 26 88 chr13 57798097 57798643 -61946255 + MER67D LTR ERV1 3 514 0 240 179 39 0 chr13 57799558 57799636 -61945262 + (TA)n Simple_repeat Simple_repeat 2 82 0 24 77 0 0 chr13 57799745 57799797 -61945101 + AT_rich Low_complexity Low_complexity 1 52 0 270 336 96 8 chr13 57800742 57800867 -61944031 - MIR SINE MIR -120 142 7 247 293 42 54 chr13 57802007 57802174 -61942724 - L2 LINE L2 -12 3301 3137 2725 182 66 40 chr13 57804925 57805277 -61939621 + L1MA7 LINE L1 5593 5934 -357 2012 123 7 0 chr13 57805277 57805569 -61939329 + AluSp SINE Alu 1 294 -19 2725 182 66 40 chr13 57805569 57805897 -61939001 + L1MA7 LINE L1 5934 6291 0 1875 251 64 48 chr13 57805886 57806704 -61938194 + L1ME1 LINE L1 5173 6001 -165 * 337 172 126 23 chr13 57806805 57806862 -61938036 - L1MA10 LINE L1 -110 6224 6154 432 0 0 0 chr13 57806862 57806910 -61937988 + (TG)n Simple_repeat Simple_repeat 1 48 0 337 172 126 23 chr13 57806910 57806939 -61937959 - L1MA10 LINE L1 -180 6154 6129 1175 214 38 17 chr13 57806947 57807220 -61937678 - L1MB1 LINE L1 -114 6075 5794 210 118 0 0 chr13 57807220 57807254 -61937644 + (TG)n Simple_repeat Simple_repeat 1 34 0 1175 214 38 17 chr13 57807254 57807270 -61937628 - L1MB1 LINE L1 -395 5794 5780 602 164 39 0 chr13 57807694 57807798 -61937100 - L1MB1 LINE L1 -547 5787 5680 * 1149 155 163 16 chr13 57807780 57808038 -61936860 + L1MB1 LINE L1 5412 5707 -627 507 229 15 8 chr13 57808037 57808168 -61936730 + L1MA10 LINE L1 6201 6332 -2 * 980 255 36 6 chr13 57808193 57808522 -61936376 - L1M4 LINE L1 -2994 3152 2814 344 261 91 42 chr13 57808549 57808714 -61936184 - L1MCc LINE L1 -6107 316 144 203 228 35 0 chr13 57810270 57810327 -61934571 - MIR SINE MIR -37 225 167 565 216 11 74 chr13 57810327 57810503 -61934395 + MER104 DNA Tc2 1 165 -15 180 360 13 0 chr13 57810553 57810628 -61934270 - MIR SINE MIR -147 115 40 29 47 0 0 chr13 57811114 57811157 -61933741 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr13 57811180 57811203 -61933695 + AT_rich Low_complexity Low_complexity 1 23 0 484 316 47 117 chr13 57811205 57811591 -61933307 - L2 LINE L2 -2 3270 2912 2393 99 65 8 chr13 57812437 57812792 -61932106 + THE1C LTR MaLR 1 375 0 738 53 0 0 chr13 57812872 57812967 -61931931 - L1PA5 LINE L1 -332 5822 5728 2604 47 0 0 chr13 57812969 57813287 -61931611 + L1PA5 LINE L1 5824 6141 -13 234 0 0 0 chr13 57813290 57813316 -61931582 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 215 100 0 25 chr13 57813533 57813573 -61931325 + (TTAG)n Simple_repeat Simple_repeat 2 40 0 1404 264 98 0 chr13 57813715 57814121 -61930777 - L1MEc LINE L1 -5524 872 427 739 267 116 12 chr13 57814123 57814381 -61930517 - L1MEc LINE L1 -6019 377 93 182 385 115 0 chr13 57814464 57814646 -61930252 - L2 LINE L2 -591 2723 2521 180 0 0 0 chr13 57815281 57815301 -61929597 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 34 42 0 0 chr13 57815749 57815797 -61929101 + AT_rich Low_complexity Low_complexity 1 48 0 24 32 0 0 chr13 57815876 57815907 -61928991 + AT_rich Low_complexity Low_complexity 1 31 0 766 315 48 15 chr13 57816442 57816836 -61928062 + MER20B DNA MER1_type 183 589 -194 800 217 0 0 chr13 57816844 57817001 -61927897 + AluJb SINE Alu 145 301 -11 473 246 28 28 chr13 57817001 57817143 -61927755 + MER20B DNA MER1_type 606 747 -36 708 215 28 11 chr13 57817232 57817409 -61927489 - MER3 DNA MER1_type -6 203 24 12688 219 23 18 chr13 57817531 57822123 -61922775 - L1PA16 LINE L1 0 6869 2292 2636 135 73 8 chr13 57822123 57822603 -61922295 - MER9 LTR ERVK 0 511 1 12688 219 23 18 chr13 57822603 57824189 -61920709 - L1PA16 LINE L1 -4577 2292 715 1055 159 36 67 chr13 57824265 57824902 -61919996 + L1MA4 LINE L1 5254 6291 -5 1055 188 42 0 chr13 57824902 57825141 -61919757 + L1MA4 LINE L1 6047 6295 -5 39 0 0 0 chr13 57825644 57825683 -61919215 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr13 57825737 57825773 -61919125 + AT_rich Low_complexity Low_complexity 1 36 0 326 346 44 13 chr13 57825880 57826108 -61918790 + L1ME4a LINE L1 4802 5036 -1110 23 0 0 0 chr13 57826243 57826266 -61918632 + AT_rich Low_complexity Low_complexity 1 23 0 338 193 134 1 chr13 57826339 57826469 -61918429 + L1ME4a LINE L1 5315 5464 -719 361 339 111 33 chr13 57826528 57826953 -61917945 + L1ME4a LINE L1 5517 5974 -147 22 70 0 0 chr13 57827133 57827176 -61917722 + AT_rich Low_complexity Low_complexity 1 43 0 257 266 73 16 chr13 57827508 57827632 -61917266 + L3 LINE CR1 1148 1278 -299 24 32 0 0 chr13 57828573 57828604 -61916294 + AT_rich Low_complexity Low_complexity 1 31 0 280 316 53 26 chr13 57828995 57829109 -61915789 + L2 LINE L2 3187 3303 -10 277 141 0 26 chr13 57829180 57829258 -61915640 + (TA)n Simple_repeat Simple_repeat 2 77 0 31 58 0 0 chr13 57829297 57829349 -61915549 + AT_rich Low_complexity Low_complexity 1 52 0 354 357 62 39 chr13 57830136 57830542 -61914356 + L2 LINE L2 2437 2851 -463 679 161 0 7 chr13 57830577 57830720 -61914178 - AluSc SINE Alu -16 293 152 2277 228 60 60 chr13 57830827 57831057 -61913841 + L1MD2 LINE L1 5642 5871 -488 1365 210 17 28 chr13 57831057 57831348 -61913550 + AluJo SINE Alu 2 289 -23 2277 228 60 60 chr13 57831348 57831823 -61913075 + L1MD2 LINE L1 5870 6347 -12 1727 254 66 41 chr13 57831965 57832821 -61912077 - L1M4 LINE L1 -2229 3917 3035 2665 184 12 0 chr13 57832821 57833309 -61911589 - L1PA16 LINE L1 0 6166 5673 1937 223 32 2 chr13 57833309 57833740 -61911158 + L1P LINE L1 4025 4468 -1678 739 143 0 50 chr13 57834233 57834415 -61910483 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 205 235 0 31 chr13 57834424 57834522 -61910376 + CT-rich Low_complexity Low_complexity 2 96 0 1777 190 44 3 chr13 57835077 57835466 -61909432 - L1MC3 LINE L1 -11 7774 7370 517 297 55 16 chr13 57835491 57835673 -61909225 + MIR SINE MIR 17 205 -57 221 222 0 28 chr13 57835770 57835842 -61909056 + A-rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr13 57835954 57835975 -61908923 + AT_rich Low_complexity Low_complexity 1 21 0 429 275 0 11 chr13 57836003 57836131 -61908767 + L1MC/D LINE L1 5496 5617 -683 920 211 14 9 chr13 57836233 57836446 -61908452 + L1MC3 LINE L1 6945 7158 -627 2273 87 0 6 chr13 57837143 57837454 -61907444 + AluY SINE Alu 1 309 -2 661 324 125 19 chr13 57837461 57837982 -61906916 - L2 LINE L2 -1724 1590 1015 724 325 22 0 chr13 57838148 57838379 -61906519 + L2 LINE L2 2560 2795 -519 898 215 16 0 chr13 57838503 57838689 -61906209 + MER5A DNA MER1_type 1 189 0 449 299 12 30 chr13 57838825 57838989 -61905909 + L2 LINE L2 3153 3313 0 754 186 7 7 chr13 57839591 57839731 -61905167 + AluSx SINE Alu 39 178 -134 197 381 72 0 chr13 57839831 57839928 -61904970 + L2 LINE L2 3205 3308 -5 258 268 37 37 chr13 57840064 57840146 -61904752 - L3 LINE CR1 -1 1576 1495 205 300 171 76 chr13 57840488 57840698 -61904200 - L3 LINE CR1 -833 744 515 258 286 0 0 chr13 57841375 57841445 -61903453 + (CA)n Simple_repeat Simple_repeat 2 71 0 195 252 27 0 chr13 57842154 57842265 -61902633 + (TA)n Simple_repeat Simple_repeat 2 115 0 211 264 121 22 chr13 57842541 57842632 -61902266 + L3 LINE CR1 1467 1566 -11 192 295 135 26 chr13 57842737 57842893 -61902005 - L2 LINE L2 -8 3305 3133 25 31 0 0 chr13 57843262 57843294 -61901604 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr13 57845935 57845969 -61898929 + AT_rich Low_complexity Low_complexity 1 34 0 749 256 85 52 chr13 57846249 57846554 -61898344 - L1ME1 LINE L1 -1 6165 5851 304 224 82 10 chr13 57846563 57846661 -61898237 + MLT1C LTR MaLR 3 107 -398 686 249 43 5 chr13 57846686 57846871 -61898027 + MLT1C LTR MaLR 276 467 0 1114 230 101 68 chr13 57846886 57847390 -61897508 - L1ME1 LINE L1 -341 5825 5305 1652 220 68 19 chr13 57847401 57847637 -61897261 - MLT1C LTR MaLR -4 463 240 189 0 0 0 chr13 57847637 57847658 -61897240 + (TG)n Simple_repeat Simple_repeat 2 22 0 1652 220 68 19 chr13 57847658 57847678 -61897220 - MLT1C LTR MaLR -227 240 222 2384 61 0 6 chr13 57847678 57847989 -61896909 - AluY SINE Alu -2 309 1 1652 220 68 19 chr13 57847989 57848159 -61896739 - MLT1C LTR MaLR -245 222 15 23 33 0 0 chr13 57848400 57848430 -61896468 + AT_rich Low_complexity Low_complexity 1 30 0 357 373 15 0 chr13 57848523 57848657 -61896241 - L2 LINE L2 -1333 1981 1846 2000 134 6 27 chr13 57849230 57849595 -61895303 + L1PA10 LINE L1 5811 6167 -1 2061 228 53 53 chr13 57851476 57852921 -61891977 - L1MC/D LINE L1 -527 5715 4282 23272 183 33 39 chr13 57853036 57857592 -61887306 - L1P4 LINE L1 -666 5817 1328 2769 79 0 0 chr13 57857592 57857945 -61886953 - THE1A LTR MaLR -2 353 1 23272 183 33 39 chr13 57857945 57859258 -61885640 - L1P4 LINE L1 -5155 1328 8 196 316 35 0 chr13 57860554 57860611 -61884287 - L2 LINE L2 -5 3267 3209 2071 169 28 3 chr13 57860878 57861233 -61883665 + THE1B LTR MaLR 1 364 0 10060 110 26 36 chr13 57861233 57862830 -61882068 + THE1B-int LTR MaLR 1 1580 0 2297 124 28 6 chr13 57862830 57863186 -61881712 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr13 57863418 57863439 -61881459 + AT_rich Low_complexity Low_complexity 1 21 0 2289 105 73 14 chr13 57864016 57864360 -61880538 + THE1B LTR MaLR 1 364 0 10513 103 43 11 chr13 57864360 57865159 -61879739 + THE1B-int LTR MaLR 1 772 -808 2313 103 0 3 chr13 57865159 57865471 -61879427 + AluSp SINE Alu 1 311 -2 10513 103 43 11 chr13 57865471 57866201 -61878697 + THE1B-int LTR MaLR 772 1580 0 1983 145 73 14 chr13 57866201 57866545 -61878353 + THE1B LTR MaLR 1 364 0 355 272 204 14 chr13 57868270 57868417 -61876481 - MER5B DNA MER1_type 0 178 4 23 0 0 0 chr13 57868844 57868867 -61876031 + AT_rich Low_complexity Low_complexity 1 23 0 445 145 211 40 chr13 57868875 57869027 -61875871 - L1MC3 LINE L1 -8 7777 7600 37 23 0 0 chr13 57870575 57870619 -61874279 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr13 57871201 57871227 -61873671 + AT_rich Low_complexity Low_complexity 1 26 0 773 179 65 0 chr13 57871728 57871912 -61872986 + L1MA8 LINE L1 6094 6289 -2 21 0 0 0 chr13 57871915 57871936 -61872962 + AT_rich Low_complexity Low_complexity 1 21 0 239 286 48 0 chr13 57872313 57872397 -61872501 - L1MC/D LINE L1 -2300 5508 5421 2363 214 41 7 chr13 57872667 57873129 -61871769 + LTR42 LTR ERVL 18 495 0 27 73 0 0 chr13 57874445 57874500 -61870398 + AT_rich Low_complexity Low_complexity 1 55 0 318 365 13 19 chr13 57874746 57874902 -61869996 - MIR SINE MIR 0 262 108 216 285 8 65 chr13 57874966 57875089 -61869809 + MIR SINE MIR 147 262 0 760 222 28 0 chr13 57976580 57976756 -61768142 + MLT2D LTR ERVL 234 414 0 44 46 0 0 chr13 57976917 57976982 -61767916 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr13 57978798 57978826 -61766072 + AT_rich Low_complexity Low_complexity 1 28 0 242 368 60 8 chr13 57980311 57980428 -61764470 + MIR SINE MIR 7 129 -133 21 36 0 0 chr13 57980508 57980536 -61764362 + AT_rich Low_complexity Low_complexity 1 28 0 194 354 0 0 chr13 57980643 57980691 -61764207 + L2 LINE L2 3214 3261 -11 426 356 7 0 chr13 57981009 57981158 -61763740 - MER5B DNA MER1_type -16 162 13 250 265 174 0 chr13 57981253 57981351 -61763547 - L3 LINE CR1 -108 1469 1355 271 186 0 17 chr13 57981702 57981761 -61763137 - MLT1F1 LTR MaLR 0 567 510 970 258 49 28 chr13 57981836 57982123 -61762775 - MLT1F1 LTR MaLR -273 294 2 244 338 94 6 chr13 57982204 57982364 -61762534 - L3 LINE CR1 -805 772 599 2204 97 28 0 chr13 57982452 57982742 -61762156 - AluSx SINE Alu -14 298 1 330 26 0 0 chr13 57983575 57983614 -61761284 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr13 57983685 57983706 -61761192 + AT_rich Low_complexity Low_complexity 1 21 0 227 286 14 29 chr13 57984815 57984885 -61760013 + L2 LINE L2 3233 3301 -12 1871 166 0 19 chr13 57984885 57985199 -61759699 + AluSx SINE Alu 1 308 -4 2333 158 49 20 chr13 57985591 57986039 -61758859 - LOR1b LTR ERV1 0 461 1 993 173 140 0 chr13 57986141 57986309 -61758589 + MER1A DNA MER1_type 1 197 -332 3362 128 242 6 chr13 57986309 57986974 -61757924 - LTR12 LTR ERV1 0 826 5 2429 175 13 23 chr13 57986988 57987593 -61757305 - pTR5 LTR ERV1 -1092 1346 748 2325 111 15 9 chr13 57987593 57987936 -61756962 + MER1A DNA MER1_type 185 529 0 835 211 91 43 chr13 57988140 57988349 -61756549 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr13 57989195 57989217 -61755681 + AT_rich Low_complexity Low_complexity 1 22 0 424 281 87 35 chr13 57989402 57989724 -61755174 - L1ME LINE L1 -335 5786 5471 233 270 16 0 chr13 57991615 57991678 -61753220 + (TA)n Simple_repeat Simple_repeat 1 64 0 37 0 0 0 chr13 57992143 57992180 -61752718 + AT_rich Low_complexity Low_complexity 1 37 0 1303 188 23 0 chr13 57994540 57994801 -61750097 + L1MC2 LINE L1 6064 6330 -14 1778 83 0 40 chr13 57994919 57995197 -61749701 - AluY SINE Alu 0 307 40 22 35 0 0 chr13 57995285 57995314 -61749584 + AT_rich Low_complexity Low_complexity 1 29 0 450 170 116 0 chr13 57995317 57995429 -61749469 + L1MA9 LINE L1 6188 6312 0 23 0 0 0 chr13 57995537 57995560 -61749338 + AT_rich Low_complexity Low_complexity 1 23 0 288 303 18 23 chr13 57996053 57996180 -61748718 + MER5A DNA MER1_type 11 138 -40 436 152 305 0 chr13 57996203 57996308 -61748590 + MER1B DNA MER1_type 1 137 -160 402 158 171 0 chr13 57996303 57996385 -61748513 + MER1B DNA MER1_type 42 137 -160 * 1581 133 96 35 chr13 57996380 57996726 -61748172 + MER1B DNA MER1_type 42 339 0 441 0 0 0 chr13 57996782 57996831 -61748067 + (TG)n Simple_repeat Simple_repeat 1 49 0 432 309 12 19 chr13 57999224 57999386 -61745512 - L3b LINE CR1 -318 1265 1105 1932 148 0 20 chr13 58000810 58001114 -61743784 + AluSx SINE Alu 1 298 -14 226 331 81 24 chr13 58002440 58002564 -61742334 + L2 LINE L2 2932 3062 -210 25 51 0 0 chr13 58002817 58002856 -61742042 + AT_rich Low_complexity Low_complexity 1 39 0 670 173 13 53 chr13 58003200 58003350 -61741548 + MLT1A1 LTR MaLR 37 180 -185 1828 142 42 0 chr13 58003654 58003942 -61740956 - AluSx SINE Alu -11 301 2 15120 158 20 34 chr13 58004436 58009450 -61735448 - L1MA1 LINE L1 0 7721 2737 411 39 0 0 chr13 58009450 58009502 -61735396 + MADE1 DNA Mariner 1 52 -28 15120 158 20 34 chr13 58009502 58009685 -61735213 - L1MA1 LINE L1 -4984 2737 2553 231 323 15 0 chr13 58011432 58011497 -61733401 + LTR67 LTR ERVL 113 178 -379 248 314 81 17 chr13 58011641 58011813 -61733085 + LTR67 LTR ERVL 353 535 -22 21 71 0 0 chr13 58013849 58013891 -61731007 + AT_rich Low_complexity Low_complexity 1 42 0 186 71 0 0 chr13 58013958 58013986 -61730912 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr13 58014477 58014498 -61730400 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr13 58015293 58015325 -61729573 + AT_rich Low_complexity Low_complexity 1 32 0 369 0 0 0 chr13 58015422 58015463 -61729435 + (TA)n Simple_repeat Simple_repeat 1 41 0 361 280 154 28 chr13 58017409 58017552 -61727346 - MER5B DNA MER1_type -1 177 17 18455 56 1 0 chr13 58018898 58021195 -61723703 - L1P LINE L1 -3838 2308 10 7122 25 1 0 chr13 58021195 58022035 -61722863 + L1PA4 LINE L1 5315 6155 0 1544 148 13 0 chr13 58022231 58022494 -61722404 - AluSx SINE Alu 0 315 50 22 35 0 0 chr13 58022622 58022651 -61722247 + AT_rich Low_complexity Low_complexity 1 29 0 1924 87 60 0 chr13 58022918 58023216 -61721682 - L1PA8 LINE L1 -3 6169 5854 2154 201 31 2 chr13 58023252 58023666 -61721232 + MSTB LTR MaLR 1 426 0 6842 56 16 1 chr13 58024110 58025476 -61719422 + L1PA7 LINE L1 4790 6141 -13 279 335 28 63 chr13 58025814 58025907 -61718991 + L2 LINE L2 2378 2473 -841 2317 71 0 14 chr13 58025907 58026201 -61718697 - AluY SINE Alu -21 290 1 279 335 28 63 chr13 58026201 58026361 -61718537 + L2 LINE L2 2473 2622 -692 185 296 0 128 chr13 58027034 58027159 -61717739 - MIR SINE MIR -70 192 84 290 299 82 22 chr13 58028155 58028289 -61716609 + MER117 DNA MER1_type 30 171 -26 4040 138 12 3 chr13 58028496 58029140 -61715758 + L1PA15 LINE L1 5513 6162 -3 594 334 71 30 chr13 58029431 58029898 -61715000 - LTR16C LTR ERVL -2 489 4 308 24 0 24 chr13 58031616 58031658 -61713240 + (TAA)n Simple_repeat Simple_repeat 2 42 0 500 373 28 0 chr13 58031658 58031910 -61712988 - MIR SINE MIR -3 259 1 687 282 151 28 chr13 58032849 58033390 -61711508 - MLT1G1 LTR MaLR 0 590 4 23 0 0 0 chr13 58033477 58033500 -61711398 + AT_rich Low_complexity Low_complexity 1 23 0 274 351 20 0 chr13 58035598 58035749 -61709149 + GA-rich Low_complexity Low_complexity 2 155 0 280 291 24 92 chr13 58035832 58036038 -61708860 - MLT1L LTR MaLR -421 194 3 183 388 33 40 chr13 58036387 58036539 -61708359 - L2 LINE L2 0 3272 3122 347 342 19 32 chr13 58037329 58037484 -61707414 + MIR3 SINE MIR 42 194 -14 407 300 95 21 chr13 58037665 58037855 -61707043 - MIR SINE MIR -18 244 41 2431 55 3 0 chr13 58041400 58041693 -61703205 + AluY SINE Alu 1 294 -17 180 417 34 5 chr13 58042103 58042307 -61702591 - MIR SINE MIR -6 256 47 189 213 0 0 chr13 58042568 58042615 -61702283 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 2166 81 32 0 chr13 58043963 58044248 -61700650 + AluSq SINE Alu 3 296 -17 304 265 6 43 chr13 58046649 58046811 -61698087 + HAL1b LINE L1 618 773 -575 248 269 115 67 chr13 58046819 58047027 -61697871 + HAL1b LINE L1 830 1047 -301 314 283 145 30 chr13 58047109 58047275 -61697623 + HAL1b LINE L1 1164 1348 0 37 62 0 0 chr13 58047412 58047477 -61697421 + AT_rich Low_complexity Low_complexity 1 65 0 25 0 0 0 chr13 58049647 58049672 -61695226 + AT_rich Low_complexity Low_complexity 1 25 0 41 36 0 0 chr13 58050254 58050309 -61694589 + AT_rich Low_complexity Low_complexity 1 55 0 343 208 0 120 chr13 58051876 58052001 -61692897 - L1ME LINE L1 -609 5561 5452 460 312 72 52 chr13 58052022 58052637 -61692261 - L1ME LINE L1 -758 5388 4762 401 306 65 34 chr13 58052719 58053101 -61691797 - L1ME LINE L1 -1880 4266 3873 899 276 119 30 chr13 58053242 58053811 -61691087 - L1ME LINE L1 -2760 3386 2712 1999 102 6 50 chr13 58053811 58054089 -61690809 + AluSg SINE Alu 1 265 -45 291 28 0 0 chr13 58054089 58054125 -61690773 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1999 102 6 50 chr13 58054125 58054168 -61690730 + AluSg SINE Alu 265 308 -2 899 276 119 30 chr13 58054168 58054466 -61690432 - L1ME LINE L1 -3434 2712 2442 2377 153 35 5 chr13 58054606 58055133 -61689765 + L1MA9 LINE L1 5154 5695 -596 1896 139 18 15 chr13 58055135 58055472 -61689426 + L1MA8 LINE L1 5946 6283 -8 22 0 0 0 chr13 58055473 58055495 -61689403 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 58055930 58055953 -61688945 + (TA)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr13 58055980 58056007 -61688891 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 58056137 58056160 -61688738 + AT_rich Low_complexity Low_complexity 1 23 0 2152 114 7 0 chr13 58056165 58056463 -61688435 - AluSx SINE Alu -12 300 1 499 280 163 25 chr13 58056481 58057003 -61687895 - L1MEc LINE L1 -1299 5083 4490 1362 165 23 38 chr13 58057032 58057298 -61687600 - AluJo SINE Alu -48 264 3 1327 292 39 45 chr13 58057301 58058092 -61686806 - L1MEc LINE L1 -1886 4496 3711 970 254 138 67 chr13 58058162 58058801 -61686097 - L1MEc LINE L1 -2956 3426 2834 2370 163 19 37 chr13 58058801 58059285 -61685613 + L1MA9 LINE L1 5823 6297 -15 970 254 138 67 chr13 58059285 58059380 -61685518 - L1MEc LINE L1 -3548 2834 2747 2111 123 7 0 chr13 58059380 58059690 -61685208 - AluSx SINE Alu 0 312 1 970 254 138 67 chr13 58059690 58059973 -61684925 - L1MEc LINE L1 -3635 2747 2329 343 349 56 24 chr13 58060101 58060476 -61684422 - L1MEc LINE L1 -5918 645 259 431 269 63 62 chr13 58060916 58061313 -61683585 - L1MDb LINE L1 -4712 1549 1091 399 278 86 66 chr13 58061513 58061862 -61683036 - L1MDb LINE L1 -5165 905 550 196 308 19 0 chr13 58065238 58065290 -61679608 - L3 LINE CR1 -1 1576 1524 189 367 78 0 chr13 58065759 58065849 -61679049 - L2 LINE L2 -48 3265 3169 2901 207 61 19 chr13 58066698 58067385 -61677513 - LTR28 LTR ERV1 -304 716 1 183 329 0 14 chr13 58067792 58067865 -61677033 - L2 LINE L2 -1437 1877 1806 344 307 20 0 chr13 58067870 58067971 -61676927 + L2 LINE L2 3160 3262 -10 196 349 105 0 chr13 58067999 58068085 -61676813 - L2 LINE L2 -1522 1792 1698 184 394 81 0 chr13 58069274 58069373 -61675525 - L2 LINE L2 -22 3250 3144 7538 194 12 6 chr13 58070944 58073450 -61671448 - L1PB4 LINE L1 0 6156 3637 246 227 0 82 chr13 58073758 58073855 -61671043 + MER67C LTR ERV1 1 89 -425 1268 149 0 158 chr13 58073892 58074227 -61670671 - AluJb SINE Alu -19 283 2 812 228 205 48 chr13 58074228 58074662 -61670236 + MER67C LTR ERV1 72 510 -4 494 193 29 14 chr13 58074751 58074891 -61670007 + L1M4 LINE L1 4980 5121 -1025 1932 192 0 11 chr13 58075275 58075644 -61669254 + MLT1A1 LTR MaLR 1 365 0 180 0 0 0 chr13 58076675 58076695 -61668203 + (TGG)n Simple_repeat Simple_repeat 1 20 0 32 67 0 0 chr13 58077481 58077541 -61667357 + AT_rich Low_complexity Low_complexity 1 60 0 3204 219 211 65 chr13 58077767 58078552 -61666346 + L1MDa LINE L1 22 691 -5849 1584 194 92 6 chr13 58078552 58078888 -61666010 + MLT1A1 LTR MaLR 1 365 0 3204 219 211 65 chr13 58078888 58079203 -61665695 + L1MDa LINE L1 691 959 -5581 180 77 0 0 chr13 58079203 58079229 -61665669 + (TG)n Simple_repeat Simple_repeat 2 27 0 3204 219 211 65 chr13 58079229 58079522 -61665376 + L1MDa LINE L1 959 1619 -4921 228 348 9 0 chr13 58079742 58079854 -61665044 + L1MB8 LINE L1 88 200 -6342 4738 228 42 44 chr13 58079915 58082227 -61662671 + L1MB8 LINE L1 4154 6457 -219 28 0 0 0 chr13 58082530 58082558 -61662340 + AT_rich Low_complexity Low_complexity 1 28 0 27 81 0 0 chr13 58084937 58084999 -61659899 + AT_rich Low_complexity Low_complexity 1 62 0 25 31 0 0 chr13 58086413 58086445 -61658453 + AT_rich Low_complexity Low_complexity 1 32 0 387 280 80 47 chr13 58087074 58087224 -61657674 + MIR3 SINE MIR 42 196 -12 225 132 0 0 chr13 58088655 58088693 -61656205 + (T)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr13 58090020 58090050 -61654848 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 58091108 58091137 -61653761 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 58092563 58092584 -61652314 + AT_rich Low_complexity Low_complexity 1 21 0 218 327 65 54 chr13 58092892 58093060 -61651838 + MIR SINE MIR 47 216 -46 21 57 0 0 chr13 58093442 58093477 -61651421 + AT_rich Low_complexity Low_complexity 1 35 0 212 0 0 35 chr13 58093972 58094001 -61650897 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2080 90 0 33 chr13 58094013 58094314 -61650584 - AluY SINE Alu -17 294 4 2481 247 85 26 chr13 58094500 58095086 -61649812 - L1MB7 LINE L1 -9 6175 5523 6968 47 15 1 chr13 58095086 58096452 -61648446 + L1PA7 LINE L1 4765 6152 -2 2481 247 85 26 chr13 58096452 58096845 -61648053 - L1MB7 LINE L1 -661 5523 5155 22 80 0 0 chr13 58096852 58096902 -61647996 + AT_rich Low_complexity Low_complexity 1 50 0 47 33 0 0 chr13 58097060 58097121 -61647777 + AT_rich Low_complexity Low_complexity 1 61 0 740 331 101 4 chr13 58097596 58097874 -61647024 - MLT2E LTR ERVL -223 405 101 430 344 84 0 chr13 58098150 58098423 -61646475 + L1ME LINE L1 5490 5785 -336 2503 145 84 9 chr13 58098499 58098961 -61645937 - LOR1a LTR ERV1 0 497 1 596 280 93 28 chr13 58099956 58100170 -61644728 + MIR SINE MIR 2 229 -33 446 239 187 7 chr13 58100389 58100544 -61644354 - MIR SINE MIR -19 243 61 373 216 216 0 chr13 58101145 58101256 -61643642 + Tigger7 DNA MER2_type 2350 2484 -3 350 182 30 0 chr13 58101260 58101326 -61643572 - MLT1C LTR MaLR -390 77 10 289 355 32 0 chr13 58101367 58101491 -61643407 + MIR3 SINE MIR 61 188 -20 1517 244 45 8 chr13 58101627 58101782 -61643116 - MLT1A1 LTR MaLR 0 365 217 2360 161 67 7 chr13 58101782 58102217 -61642681 - LOR1b LTR ERV1 0 461 1 1517 244 45 8 chr13 58102217 58102413 -61642485 - MLT1A1 LTR MaLR -148 217 1 1733 210 22 28 chr13 58102647 58103009 -61641889 + MLT1A1 LTR MaLR 1 360 -5 345 47 0 0 chr13 58103898 58103941 -61640957 + (CA)n Simple_repeat Simple_repeat 2 44 0 451 113 25 0 chr13 58104466 58104546 -61640352 + CT-rich Low_complexity Low_complexity 3 84 0 241 339 0 0 chr13 58105007 58105072 -61639826 + MIR SINE MIR 65 129 -79 26 0 0 0 chr13 58105132 58105158 -61639740 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr13 58105349 58105383 -61639515 + AT_rich Low_complexity Low_complexity 1 34 0 235 246 0 0 chr13 58105397 58105454 -61639444 + (TA)n Simple_repeat Simple_repeat 2 58 0 22 56 0 0 chr13 58105710 58105746 -61639152 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr13 58106845 58106877 -61638021 + AT_rich Low_complexity Low_complexity 1 32 0 2188 70 3 11 chr13 58106981 58107309 -61637589 + AluY SINE Alu 1 326 0 237 330 47 0 chr13 58107492 58107598 -61637300 + MER94 DNA DNA 24 134 0 382 355 104 44 chr13 58108581 58108947 -61635951 - L3 LINE CR1 -87 1490 1103 438 234 135 0 chr13 58112000 58112111 -61632787 - L2 LINE L2 0 3313 3188 1958 122 0 7 chr13 58112225 58112503 -61632395 + AluSx SINE Alu 1 276 -36 39 22 0 0 chr13 58112511 58112557 -61632341 + AT_rich Low_complexity Low_complexity 1 46 0 1399 227 3 22 chr13 58113649 58113966 -61630932 - AluJo SINE Alu -1 311 1 22 0 0 0 chr13 58114743 58114765 -61630133 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr13 58114844 58114869 -61630029 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 283 216 11 11 chr13 58114874 58114962 -61629936 + (TA)n Simple_repeat Simple_repeat 2 89 0 1279 245 41 48 chr13 58116230 58116507 -61628391 - MLT1C LTR MaLR -8 459 185 722 182 0 8 chr13 58116507 58116639 -61628259 - FLAM_C SINE Alu -2 131 1 1279 245 41 48 chr13 58116639 58116823 -61628075 - MLT1C LTR MaLR -282 185 1 25 0 0 0 chr13 58117526 58117551 -61627347 + AT_rich Low_complexity Low_complexity 1 25 0 2287 112 0 0 chr13 58117818 58118131 -61626767 - AluSq SINE Alu 0 313 1 1590 191 29 41 chr13 58118490 58118835 -61626063 + MLT1A1 LTR MaLR 25 365 0 25 19 8 0 chr13 58119094 58119169 -61625729 + AT_rich Low_complexity Low_complexity 1 32 0 828 292 89 29 chr13 58119334 58119817 -61625081 - L1ME3A LINE L1 -15 6155 5644 1962 142 0 0 chr13 58119972 58120261 -61624637 - AluSx SINE Alu -23 289 1 912 279 22 8 chr13 58120261 58120547 -61624351 - L1P5 LINE L1 -541 5610 5315 257 266 0 0 chr13 58121310 58121374 -61623524 - L1MEd LINE L1 -5102 1017 954 775 195 0 0 chr13 58121379 58121507 -61623391 - FLAM_A SINE Alu -5 128 1 264 375 48 0 chr13 58122489 58122593 -61622305 + L2 LINE L2 3125 3233 -39 22 35 0 0 chr13 58122758 58122787 -61622111 + AT_rich Low_complexity Low_complexity 1 29 0 13029 227 23 13 chr13 58123596 58127493 -61617405 + L1PA16 LINE L1 1721 5674 -492 189 0 0 0 chr13 58127493 58127514 -61617384 + (TAA)n Simple_repeat Simple_repeat 1 21 0 13029 227 23 13 chr13 58127514 58128007 -61616891 + L1PA16 LINE L1 5674 6160 -6 210 335 152 25 chr13 58128132 58128329 -61616569 + MIR SINE MIR 17 238 -24 26 64 0 0 chr13 58128376 58128423 -61616475 + AT_rich Low_complexity Low_complexity 1 47 0 1763 153 31 3 chr13 58129206 58129500 -61615398 + MER47A DNA MER2_type 65 366 0 544 162 19 0 chr13 58129500 58129605 -61615293 - L1 LINE L1 -876 5270 5164 217 361 0 0 chr13 58129627 58129710 -61615188 - MIR SINE MIR -128 134 52 454 173 13 0 chr13 58130216 58130291 -61614607 + MLT1A1 LTR MaLR 12 87 -278 466 35 0 58 chr13 58130291 58130377 -61614521 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 2067 108 10 10 chr13 58130378 58130675 -61614223 - AluSx SINE Alu -15 297 1 1227 212 17 34 chr13 58130676 58130755 -61614143 + MLT1A1 LTR MaLR 75 154 -211 2057 85 68 0 chr13 58130755 58131036 -61613862 + AluSp SINE Alu 1 300 -13 1227 212 17 34 chr13 58131036 58131248 -61613650 + MLT1A1 LTR MaLR 154 361 -4 221 337 0 0 chr13 58132723 58132824 -61612074 + A-rich Low_complexity Low_complexity 1 101 0 651 343 20 12 chr13 58133572 58133817 -61611081 + MIR SINE MIR 2 248 -14 365 307 32 73 chr13 58134361 58134579 -61610319 - MIR SINE MIR -1 261 53 914 63 79 0 chr13 58134660 58134787 -61610111 + MER85 DNA T2_type 1 137 -2 2094 57 78 0 chr13 58135074 58135356 -61609542 + AluY SINE Alu 1 304 -7 661 277 140 96 chr13 58136752 58137253 -61607645 - MLT1G1 LTR MaLR 0 595 20 425 315 150 43 chr13 58137406 58137485 -61607413 - L2 LINE L2 -290 2982 2913 1771 160 163 3 chr13 58137485 58137854 -61607044 - MSTA LTR MaLR 0 428 1 425 315 150 43 chr13 58137854 58138331 -61606567 - L2 LINE L2 -359 2913 2373 273 254 282 0 chr13 58138485 58138595 -61606303 + MIR SINE MIR 122 262 0 1313 114 5 0 chr13 58138926 58139119 -61605779 + L1PB1 LINE L1 5957 6150 -1 2750 16 0 0 chr13 58139140 58139450 -61605448 + AluYb8 SINE Alu 1 310 -8 264 284 202 9 chr13 58139780 58139889 -61605009 - L2 LINE L2 -4 3309 3180 688 330 74 26 chr13 58140035 58140489 -61604409 - L2 LINE L2 -302 3011 2534 294 345 132 0 chr13 58142485 58142659 -61602239 + MIR SINE MIR 66 262 0 28 71 0 0 chr13 58142666 58142722 -61602176 + AT_rich Low_complexity Low_complexity 1 56 0 1038 221 25 8 chr13 58142748 58142983 -61601915 - AluJb SINE Alu -54 258 20 422 299 16 8 chr13 58142994 58143121 -61601777 + MLT1F1 LTR MaLR 1 128 -439 23 0 0 0 chr13 58145441 58145464 -61599434 + AT_rich Low_complexity Low_complexity 1 23 0 307 247 124 62 chr13 58146105 58146173 -61598725 - MLT1J LTR MaLR -215 235 173 2337 90 7 0 chr13 58146173 58146474 -61598424 + AluSx SINE Alu 1 303 -9 307 247 124 62 chr13 58146474 58146599 -61598299 - MLT1J LTR MaLR -277 173 64 1859 152 37 35 chr13 58146750 58147124 -61597774 + THE1C LTR MaLR 1 375 0 279 0 0 0 chr13 58147181 58147212 -61597686 + (CA)n Simple_repeat Simple_repeat 2 32 0 1165 291 63 41 chr13 58147268 58147743 -61597155 + MLT2D LTR ERVL 1 476 -44 234 0 0 0 chr13 58147743 58147769 -61597129 + (TG)n Simple_repeat Simple_repeat 2 27 0 1165 291 63 41 chr13 58147769 58147816 -61597082 + MLT2D LTR ERVL 476 520 0 31 0 0 0 chr13 58147826 58147857 -61597041 + AT_rich Low_complexity Low_complexity 1 31 0 733 300 33 29 chr13 58148839 58149146 -61595752 - HAL1b LINE L1 -796 552 245 2019 166 58 19 chr13 58150951 58151367 -61593531 - MSTB1 LTR MaLR 0 432 1 2023 136 0 13 chr13 58152146 58152454 -61592444 - AluSx SINE Alu -8 304 1 189 0 0 0 chr13 58153054 58153075 -61591823 + (CAA)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chr13 58153896 58153923 -61590975 + AT_rich Low_complexity Low_complexity 1 27 0 26 64 0 0 chr13 58153939 58153986 -61590912 + AT_rich Low_complexity Low_complexity 1 47 0 2144 108 20 0 chr13 58154640 58154935 -61589963 + AluSx SINE Alu 3 303 -9 222 150 0 0 chr13 58154935 58154975 -61589923 + (GA)n Simple_repeat Simple_repeat 1 40 0 22 35 0 0 chr13 58155042 58155071 -61589827 + AT_rich Low_complexity Low_complexity 1 29 0 216 158 0 0 chr13 58155259 58155297 -61589601 + (TA)n Simple_repeat Simple_repeat 2 39 0 262 351 18 13 chr13 58155425 58155650 -61589248 - L1ME LINE L1 -373 5748 5523 207 0 0 0 chr13 58155735 58155758 -61589140 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6294 97 5 5 chr13 58155763 58156647 -61588251 - L1PA10 LINE L1 -17 6151 5268 1204 163 5 0 chr13 58156742 58156938 -61587960 + MER4C-int LTR ERV1 6393 6589 -9 2390 132 76 38 chr13 58156965 58157411 -61587487 + MER4C LTR ERV1 3 465 0 3467 185 31 22 chr13 58157466 58158462 -61586436 + L1P4 LINE L1 4543 5541 -625 393 22 0 0 chr13 58159271 58159317 -61585581 + (TG)n Simple_repeat Simple_repeat 2 47 0 224 287 22 22 chr13 58159565 58159701 -61585197 + (TATATG)n Simple_repeat Simple_repeat 3 138 0 1137 149 6 6 chr13 58159884 58160048 -61584850 - AluSg/x SINE Alu -14 298 132 2377 67 0 41 chr13 58160048 58160364 -61584534 - AluY SINE Alu -8 303 1 1137 149 6 6 chr13 58160364 58160380 -61584518 - AluSg/x SINE Alu -179 133 118 264 130 0 0 chr13 58160729 58160775 -61584123 + (TG)n Simple_repeat Simple_repeat 2 47 0 518 56 0 0 chr13 58160936 58161008 -61583890 - L1PA2 LINE L1 -2 6153 6082 1243 109 97 15 chr13 58161010 58161224 -61583674 + pTR5 LTR ERV1 8 203 -2235 7690 26 0 1 chr13 58161224 58162196 -61582702 + L1PA3 LINE L1 5182 6152 -3 1243 109 97 15 chr13 58162196 58162304 -61582594 + pTR5 LTR ERV1 203 2438 0 532 178 129 64 chr13 58162304 58162534 -61582364 - SATR1 Satellite Satellite -117 245 1 2119 183 21 38 chr13 58162649 58163075 -61581823 + MER74A LTR ERVL 3 421 -137 2293 100 3 0 chr13 58163625 58163925 -61580973 - AluSc SINE Alu -8 301 1 2411 62 7 13 chr13 58165359 58165667 -61579231 + AluYa5 SINE Alu 1 306 -5 231 261 14 29 chr13 58166546 58166615 -61578283 + MER5A DNA MER1_type 96 163 -26 1606 275 53 45 chr13 58166816 58167037 -61577861 - MLT1E2 LTR MaLR 0 626 408 3012 192 8 31 chr13 58167037 58167687 -61577211 + LTR27 LTR ERV1 2 636 0 1606 275 53 45 chr13 58167687 58168086 -61576812 - MLT1E2 LTR MaLR -218 408 1 227 289 106 28 chr13 58168259 58168401 -61576497 - L3 LINE CR1 -576 1001 849 2369 71 3 10 chr13 58169794 58170104 -61574794 - AluY SINE Alu -3 308 1 593 303 90 36 chr13 58170112 58170614 -61574284 - L1MC/D LINE L1 -1990 5818 5290 22 0 0 0 chr13 58170927 58170949 -61573949 + AT_rich Low_complexity Low_complexity 1 22 0 348 307 123 43 chr13 58171133 58171410 -61573488 - L1MC/D LINE L1 -1446 4700 4402 678 238 26 0 chr13 58171419 58171570 -61573328 - MLT1A2 LTR MaLR -2 372 218 512 301 97 77 chr13 58171854 58172769 -61572129 - L1MC/D LINE L1 -2313 3833 2900 2258 79 0 47 chr13 58172982 58173300 -61571598 - AluY SINE Alu -4 307 5 302 268 140 6 chr13 58173963 58174120 -61570778 + MER69 DNA AcHobo 2342 2519 -7 33 56 0 0 chr13 58174302 58174356 -61570542 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr13 58174617 58174638 -61570260 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 58174775 58174797 -61570101 + AT_rich Low_complexity Low_complexity 1 22 0 1348 187 19 66 chr13 58175568 58175955 -61568943 + MER67C LTR ERV1 20 404 -245 523 201 11 98 chr13 58175965 58176139 -61568759 + MER67D LTR ERV1 356 514 0 232 362 181 5 chr13 58176153 58176352 -61568546 - L2 LINE L2 -192 3121 2888 224 221 12 0 chr13 58176376 58176434 -61568464 - MIR3 SINE MIR -52 156 97 677 281 60 0 chr13 58176851 58177036 -61567862 + MIR SINE MIR 56 251 -11 573 209 70 67 chr13 58177206 58177522 -61567376 - L1MC5 LINE L1 -168 7793 7477 1833 101 4 30 chr13 58178313 58178580 -61566318 - AluSg SINE Alu -14 296 37 180 77 0 0 chr13 58179992 58180018 -61564880 + (GA)n Simple_repeat Simple_repeat 1 26 0 2267 110 3 0 chr13 58181539 58181840 -61563058 + AluY SINE Alu 1 302 -9 233 176 0 0 chr13 58181851 58181885 -61563013 + AluSx SINE Alu 1 34 -268 4121 137 72 47 chr13 58181885 58182787 -61562111 - pTR5 LTR ERV1 0 2606 1524 1290 183 52 57 chr13 58182784 58183360 -61561538 - pTR5 LTR ERV1 -1085 1353 741 * 4198 136 100 138 chr13 58183356 58184543 -61560355 - pTR5 LTR ERV1 -231 2029 5 1681 149 0 33 chr13 58184543 58184818 -61560080 + AluSx SINE Alu 31 296 -16 612 210 19 0 chr13 58185240 58185397 -61559501 - L1 LINE L1 -3644 3462 3303 338 60 0 20 chr13 58185510 58185560 -61559338 + (TTCCC)n Simple_repeat Simple_repeat 2 50 0 666 218 0 0 chr13 58185561 58185694 -61559204 - FLAM_C SINE Alu 0 133 1 752 232 152 24 chr13 58185699 58185910 -61558988 - L1 LINE L1 -6792 238 1 24 0 0 0 chr13 58186194 58186218 -61558680 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr13 58187248 58187285 -61557613 + AT_rich Low_complexity Low_complexity 1 37 0 1006 228 103 16 chr13 58187294 58187606 -61557292 + L1MD3 LINE L1 6772 7110 -885 240 258 0 62 chr13 58187610 58187707 -61557191 + MLT1F1 LTR MaLR 35 125 -442 1649 205 50 8 chr13 58187707 58188087 -61556811 + L1MD3 LINE L1 7410 7805 -190 * 4190 128 30 8 chr13 58188077 58188832 -61556066 - L1PB1 LINE L1 -4011 2852 2043 * 10144 195 17 1 chr13 58188829 58190904 -61553994 + L1PB1 LINE L1 2849 4957 -1905 9823 17 0 0 chr13 58190899 58192439 -61552459 - L1P1 LINE L1 -386 5769 4230 * 3431 3 0 0 chr13 58192436 58192821 -61552077 + L1HS LINE L1 5771 6155 0 * 5944 159 5 16 chr13 58192822 58193501 -61551397 + L1PB1 LINE L1 4949 5634 -1233 2236 92 0 20 chr13 58193501 58193796 -61551102 - AluY SINE Alu -22 289 1 5944 159 5 16 chr13 58193796 58195063 -61549835 + L1PB1 LINE L1 5634 6866 -1 1690 184 31 0 chr13 58195085 58195379 -61549519 + AluSx SINE Alu 1 303 -9 557 243 14 65 chr13 58195382 58195434 -61549464 + L1MD3 LINE L1 7791 7844 -151 12579 142 70 9 chr13 58195434 58197712 -61547186 + Tigger1 DNA MER2_type 1 2418 0 557 243 14 65 chr13 58197712 58197873 -61547025 + L1MD3 LINE L1 7844 7993 -2 7598 32 0 0 chr13 58199220 58200381 -61544517 - L1PA3 LINE L1 0 6155 4995 7506 26 1 10 chr13 58203062 58204125 -61540773 + L1PA4 LINE L1 5101 6155 0 6461 109 47 27 chr13 58204140 58204536 -61540362 + LOR1-int LTR ERV1 4370 4757 -3363 209 33 33 0 chr13 58204536 58204566 -61540332 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1720 150 4 0 chr13 58204569 58204822 -61540076 - AluSx SINE Alu -31 281 28 6461 109 47 27 chr13 58204822 58205554 -61539344 + LOR1-int LTR ERV1 4758 5524 -2596 1763 107 44 4 chr13 58205534 58205806 -61539092 + LOR1-int LTR ERV1 5782 6064 -2056 * 433 139 42 0 chr13 58205805 58205877 -61539021 + LOR1-int LTR ERV1 8030 8104 -16 * 1889 152 7 0 chr13 58205897 58206187 -61538711 - AluSx SINE Alu -20 292 1 631 99 0 11 chr13 58206227 58206318 -61538580 - HY4 scRNA scRNA -3 90 1 3992 114 57 22 chr13 58206318 58206999 -61537899 + Tigger3b DNA MER2_type 282 986 -245 21 95 0 0 chr13 58207924 58207987 -61536911 + AT_rich Low_complexity Low_complexity 1 63 0 289 316 12 0 chr13 58208052 58208220 -61536678 - L1M4 LINE L1 -1008 5138 4969 1616 237 94 36 chr13 58208233 58208917 -61535981 - L1M4 LINE L1 -1251 4895 4173 1921 227 13 11 chr13 58208934 58209392 -61535506 + L1MC3 LINE L1 7160 7618 -167 189 195 0 0 chr13 58209443 58209484 -61535414 + (TA)n Simple_repeat Simple_repeat 1 41 0 4343 237 34 21 chr13 58209616 58211203 -61533695 + L1MD2 LINE L1 4742 6349 -10 366 157 60 0 chr13 58211305 58211388 -61533510 - L1MA8 LINE L1 -91 6200 6113 22 35 0 0 chr13 58211388 58211417 -61533481 + AT_rich Low_complexity Low_complexity 1 29 0 192 321 85 45 chr13 58211910 58212134 -61532764 + L3 LINE CR1 155 387 -1190 225 384 44 30 chr13 58212138 58212341 -61532557 + L3 LINE CR1 1051 1256 -321 21 0 0 0 chr13 58212442 58212463 -61532435 + AT_rich Low_complexity Low_complexity 1 21 0 1206 218 17 4 chr13 58212588 58212827 -61532071 - MSTD LTR MaLR 0 396 155 1770 169 38 11 chr13 58213056 58213423 -61531475 - L1MA8 LINE L1 -2 6289 5913 353 325 30 57 chr13 58215899 58216234 -61528664 + L1MC/D LINE L1 5268 5593 -2215 2326 125 19 14 chr13 58216394 58216754 -61528144 + THE1B LTR MaLR 3 364 0 237 322 23 0 chr13 58217031 58217118 -61527780 + L2 LINE L2 3184 3272 0 567 222 105 0 chr13 58217782 58217944 -61526954 + MIR SINE MIR 73 251 -11 3591 161 9 3 chr13 58219040 58219685 -61525213 + L1MA4 LINE L1 5638 6286 -14 831 211 123 55 chr13 58219996 58220430 -61524468 + MLT1D LTR MaLR 1 487 -18 28 0 0 0 chr13 58221205 58221233 -61523665 + AT_rich Low_complexity Low_complexity 1 28 0 533 274 178 0 chr13 58221370 58221567 -61523331 + MIR SINE MIR 23 254 -8 30 0 0 0 chr13 58221725 58221755 -61523143 + AT_rich Low_complexity Low_complexity 1 30 0 2281 106 0 0 chr13 58222288 58222590 -61522308 + AluSx SINE Alu 2 303 -9 227 245 14 18 chr13 58223402 58223623 -61521275 + (TA)n Simple_repeat Simple_repeat 1 220 0 23 0 0 0 chr13 58223774 58223797 -61521101 + AT_rich Low_complexity Low_complexity 1 23 0 1207 190 29 37 chr13 58224178 58224420 -61520478 + MLT1A1 LTR MaLR 84 323 -42 369 221 39 0 chr13 58224419 58224496 -61520402 + MLT1A1 LTR MaLR 284 363 -2 * 367 280 126 6 chr13 58224783 58224958 -61519940 - MIR SINE MIR -16 246 51 24 32 0 0 chr13 58227214 58227245 -61517653 + AT_rich Low_complexity Low_complexity 1 31 0 348 325 167 30 chr13 58227288 58227623 -61517275 - L2 LINE L2 -105 3208 2828 237 83 0 0 chr13 58228201 58228237 -61516661 + (CA)n Simple_repeat Simple_repeat 1 36 0 207 186 0 0 chr13 58228456 58228499 -61516399 + (TG)n Simple_repeat Simple_repeat 2 44 0 277 327 25 94 chr13 58229549 58229824 -61515074 - L2 LINE L2 -12 3301 3046 1998 121 3 32 chr13 58230995 58231309 -61513589 - AluSp SINE Alu -8 305 1 394 317 0 0 chr13 58232123 58232224 -61512674 + L2 LINE L2 3164 3264 -8 381 71 0 0 chr13 58232354 58232410 -61512488 - L1MA1 LINE L1 0 6302 6247 511 235 0 53 chr13 58232566 58232698 -61512200 - MER70B LTR ERVL 0 578 454 237 65 0 0 chr13 58233335 58233366 -61511532 + (GAA)n Simple_repeat Simple_repeat 2 32 0 230 279 199 35 chr13 58233956 58234243 -61510655 + L2 LINE L2 2284 2617 -697 185 208 75 0 chr13 58234315 58234368 -61510530 - L2 LINE L2 -54 3259 3203 468 307 84 0 chr13 58234667 58234833 -61510065 + MIR SINE MIR 43 222 -40 267 317 127 21 chr13 58235021 58235163 -61509735 + MIR SINE MIR 19 175 -87 203 199 38 107 chr13 58235244 58235375 -61509523 + L2 LINE L2 3111 3232 -81 6083 263 34 23 chr13 58235668 58238045 -61506853 - L1MCb LINE L1 -1914 4650 2278 1418 264 14 0 chr13 58238046 58238338 -61506560 + HERV3 LTR ERV1 8012 8307 -119 1253 203 33 25 chr13 58238338 58238614 -61506284 + MLT1A2 LTR MaLR 97 374 0 2715 282 47 38 chr13 58238629 58240010 -61504888 - L1MCb LINE L1 -4634 1930 564 1581 169 191 8 chr13 58240010 58240372 -61504526 - MSTA LTR MaLR 0 428 1 9133 152 7 34 chr13 58240372 58241994 -61502904 - MSTA-int LTR MaLR 0 1580 3 1444 175 194 6 chr13 58241996 58242356 -61502542 - MSTA LTR MaLR 0 428 1 2715 282 47 38 chr13 58242356 58242875 -61502023 - L1MCb LINE L1 -6000 564 1 738 199 0 0 chr13 58244217 58244348 -61500550 - FLAM_A SINE Alu -2 131 1 238 331 79 14 chr13 58244348 58244487 -61500411 + L2 LINE L2 1873 2020 -1294 964 120 35 0 chr13 58244527 58244669 -61500229 - AluJb SINE Alu -9 303 157 335 373 86 25 chr13 58244964 58245326 -61499572 + L2 LINE L2 2521 2904 -410 198 59 20 78 chr13 58246310 58246361 -61498537 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr13 58246367 58246391 -61498507 + AT_rich Low_complexity Low_complexity 1 24 0 189 171 0 0 chr13 58246406 58246441 -61498457 + (TA)n Simple_repeat Simple_repeat 1 35 0 331 240 34 0 chr13 58246482 58246628 -61498270 + (TA)n Simple_repeat Simple_repeat 1 151 0 248 197 14 28 chr13 58247663 58247734 -61497164 + Charlie7 DNA MER1_type 40 109 -2503 589 297 38 55 chr13 58247961 58248197 -61496701 + MIR SINE MIR 6 237 -25 510 129 0 0 chr13 58248746 58248831 -61496067 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 396 340 126 29 chr13 58248910 58249400 -61495498 + L2 LINE L2 2603 3144 -169 184 135 19 19 chr13 58249585 58249637 -61495261 + (CA)n Simple_repeat Simple_repeat 2 53 0 32 26 0 0 chr13 58249683 58249722 -61495176 + AT_rich Low_complexity Low_complexity 1 39 0 540 81 0 0 chr13 58252511 58252585 -61492313 + (TG)n Simple_repeat Simple_repeat 2 75 0 1683 97 0 0 chr13 58253002 58253219 -61491679 + AluSc SINE Alu 1 217 -92 1223 218 50 88 chr13 58253510 58253910 -61490988 + MLT1B LTR MaLR 1 385 -5 446 33 17 0 chr13 58253910 58253970 -61490928 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 196 323 46 39 chr13 58254464 58254594 -61490304 - MIR SINE MIR -57 205 75 492 322 82 53 chr13 58254781 58255197 -61489701 + MLT1K LTR MaLR 157 584 -4 13931 139 32 22 chr13 58255260 58256439 -61488459 + Tigger1 DNA MER2_type 24 1191 -1227 2273 108 0 0 chr13 58256439 58256734 -61488164 - AluSg SINE Alu -15 295 1 13931 139 32 22 chr13 58256734 58257927 -61486971 + Tigger1 DNA MER2_type 1191 2418 0 305 353 26 9 chr13 58259739 58259855 -61485043 - MIR SINE MIR -113 149 32 907 217 0 0 chr13 58259892 58260058 -61484840 + MER58A DNA MER1_type 43 208 -16 828 224 112 0 chr13 58361993 58362189 -61382709 + MLT1E1 LTR MaLR 433 650 -4 22 80 0 0 chr13 58363038 58363088 -61381810 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr13 58363637 58363659 -61381239 + AT_rich Low_complexity Low_complexity 1 22 0 1787 167 10 3 chr13 58364018 58364324 -61380574 - AluJb SINE Alu -4 308 1 28 61 0 0 chr13 58365721 58365770 -61379128 + AT_rich Low_complexity Low_complexity 1 49 0 1716 174 3 23 chr13 58365770 58366074 -61378824 - AluJb SINE Alu -14 298 1 627 297 116 14 chr13 58366157 58366433 -61378465 + MLT1I LTR MaLR 106 409 0 293 0 27 0 chr13 58368723 58368760 -61376138 + (TA)n Simple_repeat Simple_repeat 1 38 0 28 29 0 0 chr13 58368904 58368939 -61375959 + AT_rich Low_complexity Low_complexity 1 35 0 8211 215 65 34 chr13 58369650 58371465 -61373433 + L1MC4a LINE L1 115 2011 -4529 1979 126 0 14 chr13 58371465 58371758 -61373140 - AluSx SINE Alu -19 293 5 8211 215 65 34 chr13 58371758 58372147 -61372751 + L1MC4a LINE L1 2011 2387 -4153 410 266 84 56 chr13 58372180 58372323 -61372575 - MLT1C LTR MaLR -91 376 230 2136 267 39 17 chr13 58372325 58373040 -61371858 + L1MC4a LINE L1 3765 4495 -2045 1292 189 4 48 chr13 58373041 58373311 -61371587 - AluJo SINE Alu -54 258 1 788 266 82 36 chr13 58373361 58373792 -61371106 + L1MC4a LINE L1 4574 4984 -1556 333 0 0 0 chr13 58373792 58373829 -61371069 + (TG)n Simple_repeat Simple_repeat 2 38 0 788 266 82 36 chr13 58373829 58374136 -61370762 + L1MC4a LINE L1 4984 5454 -1086 998 294 125 22 chr13 58374504 58374613 -61370285 - HERV16 LTR ERVL -2550 2446 2350 2511 109 67 5 chr13 58374613 58375016 -61369882 + MSTA LTR MaLR 1 428 0 998 294 125 22 chr13 58375016 58375499 -61369399 - HERV16 LTR ERVL -2646 2350 1974 831 269 45 11 chr13 58375500 58375875 -61369023 - L1MEc LINE L1 -3113 3102 2715 1939 214 21 3 chr13 58375926 58376300 -61368598 - MLT1B LTR MaLR -7 383 3 733 256 18 0 chr13 58376380 58376544 -61368354 + L1MC4a LINE L1 5909 6075 -2127 255 211 11 84 chr13 58376578 58376673 -61368225 + L1MC4a LINE L1 6065 6152 -2050 351 268 53 91 chr13 58376706 58376971 -61367927 + L1MC4a LINE L1 6404 6658 -1544 394 136 0 0 chr13 58377071 58377137 -61367761 - L1PA16 LINE L1 -4 6162 6097 4821 126 8 18 chr13 58377142 58377848 -61367050 - L1PA15 LINE L1 -134 6031 5332 2539 147 16 19 chr13 58377848 58378277 -61366621 - MSTA LTR MaLR 0 428 1 4821 126 8 18 chr13 58378277 58378347 -61366551 - L1PA15 LINE L1 -833 5332 5263 1255 227 73 70 chr13 58378344 58378876 -61366022 - L1MC4a LINE L1 -1715 6093 5560 * 2202 75 21 0 chr13 58379008 58379311 -61365587 - AluSp SINE Alu 0 309 1 302 319 21 21 chr13 58379684 58379828 -61365070 - L1MEc LINE L1 -3526 2689 2546 292 246 16 56 chr13 58380281 58380407 -61364491 - HAL1 LINE L1 -863 1644 1524 197 314 14 0 chr13 58380414 58380484 -61364414 - L2 LINE L2 -2 3311 3241 235 262 115 0 chr13 58380484 58380545 -61364353 - L2 LINE L2 -33 3280 3213 1093 299 132 25 chr13 58380626 58381245 -61363653 - L2 LINE L2 -235 3037 2365 183 274 137 16 chr13 58381277 58381401 -61363497 + L2 LINE L2 3056 3194 -119 407 296 105 38 chr13 58381505 58381819 -61363079 - L1MEc LINE L1 -5016 1380 1046 1947 77 9 77 chr13 58381860 58381894 -61363004 - AluY SINE Alu -7 304 269 369 43 0 0 chr13 58381894 58381941 -61362957 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1947 77 9 77 chr13 58381941 58382232 -61362666 - AluY SINE Alu -42 269 1 258 277 30 40 chr13 58382334 58382435 -61362463 - L1MEc LINE L1 -5432 773 674 2213 111 0 3 chr13 58382480 58382786 -61362112 - AluSq SINE Alu -8 305 1 340 363 73 16 chr13 58383172 58383420 -61361478 + L1 LINE L1 4740 5001 -1145 403 235 224 6 chr13 58383571 58383741 -61361157 - L1MC4a LINE L1 -5 7803 7597 * 1291 192 151 13 chr13 58383734 58384125 -61360773 - L1MC4 LINE L1 -451 7591 7147 25 65 0 0 chr13 58384599 58384645 -61360253 + AT_rich Low_complexity Low_complexity 1 46 0 366 257 124 0 chr13 58384816 58384929 -61359969 - MIR SINE MIR -109 153 27 241 312 64 52 chr13 58386709 58386882 -61358016 + MIR SINE MIR 74 248 -14 1447 201 3 24 chr13 58386887 58387181 -61357717 - AluJo SINE Alu -24 288 1 352 226 32 90 chr13 58387381 58387536 -61357362 + LTR52 LTR ERVL 1 146 -275 900 158 50 0 chr13 58387555 58387694 -61357204 - FRAM SINE Alu -30 146 1 1335 249 52 9 chr13 58387896 58388177 -61356721 + MER20B DNA MER1_type 231 540 -243 2417 43 0 0 chr13 58388177 58388490 -61356408 - AluY SINE Alu 0 313 1 1335 249 52 9 chr13 58388490 58388652 -61356246 + MER20B DNA MER1_type 540 694 -89 267 31 0 0 chr13 58388653 58388685 -61356213 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1844 58 0 73 chr13 58388687 58388947 -61355951 - AluY SINE Alu -32 279 39 21 36 0 0 chr13 58389752 58389780 -61355118 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 58390333 58390365 -61354533 + AT_rich Low_complexity Low_complexity 1 32 0 348 332 96 18 chr13 58390383 58390612 -61354286 - MIR SINE MIR 0 262 16 22 56 0 0 chr13 58390636 58390672 -61354226 + AT_rich Low_complexity Low_complexity 1 36 0 2267 85 0 3 chr13 58391803 58392109 -61352789 - AluSc SINE Alu -4 305 1 215 211 21 74 chr13 58392436 58392531 -61352367 + MIR SINE MIR 117 206 -56 315 344 129 12 chr13 58394771 58394934 -61349964 + L2 LINE L2 3090 3271 -1 2027 116 17 7 chr13 58395131 58395424 -61349474 - AluSx SINE Alu -16 296 1 26 0 0 0 chr13 58396212 58396238 -61348660 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr13 58396307 58396344 -61348554 + AT_rich Low_complexity Low_complexity 1 37 0 216 97 0 0 chr13 58396828 58396859 -61348039 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 317 169 26 0 chr13 58396861 58396938 -61347960 + (TATG)n Simple_repeat Simple_repeat 4 82 0 29 47 0 0 chr13 58397080 58397123 -61347775 + AT_rich Low_complexity Low_complexity 1 43 0 244 316 60 51 chr13 58397295 58397412 -61347486 + MIR SINE MIR 32 149 -59 433 304 17 33 chr13 58398332 58398513 -61346385 + MER5B DNA MER1_type 1 178 0 267 103 0 0 chr13 58398628 58398667 -61346231 + (TG)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr13 58399572 58399596 -61345302 + AT_rich Low_complexity Low_complexity 1 24 0 231 289 165 21 chr13 58399600 58399794 -61345104 + LTR50 LTR ERVL 18 239 -556 484 235 36 118 chr13 58399854 58400186 -61344712 + LTR33A LTR ERVL 219 523 0 427 257 0 9 chr13 58400455 58400560 -61344338 - MER45A DNA AcHobo 0 178 75 1625 170 41 4 chr13 58400913 58401203 -61343695 + AluJb SINE Alu 3 302 0 3596 180 113 81 chr13 58402401 58403389 -61341509 - LTR28 LTR ERV1 0 1020 1 594 287 82 20 chr13 58403391 58403684 -61341214 - L1ME3A LINE L1 -18 6152 5842 2719 84 0 3 chr13 58404600 58404956 -61339942 + THE1A LTR MaLR 1 355 0 23 78 0 0 chr13 58405676 58405727 -61339171 + AT_rich Low_complexity Low_complexity 1 51 0 240 343 40 30 chr13 58405895 58405994 -61338904 - L2 LINE L2 -4 3268 3169 4399 121 38 13 chr13 58407859 58408562 -61336336 - HSMAR2 DNA Mariner -1 1301 581 2226 92 13 19 chr13 58408562 58408877 -61336021 + AluSq SINE Alu 1 313 0 931 110 11 22 chr13 58408877 58408893 -61336005 + (GGAA)n Simple_repeat Simple_repeat 1 195 0 931 110 11 22 chr13 58408893 58409075 -61335823 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3591 129 12 12 chr13 58409100 58409690 -61335208 - HSMAR2 DNA Mariner -707 595 6 333 232 88 32 chr13 58409716 58409841 -61335057 + L1ME4a LINE L1 5707 5838 -283 195 183 16 32 chr13 58409852 58409978 -61334920 + (TA)n Simple_repeat Simple_repeat 2 125 0 23 92 0 0 chr13 58409992 58410057 -61334841 + AT_rich Low_complexity Low_complexity 1 65 0 1893 134 41 3 chr13 58412047 58412339 -61332559 + AluSg SINE Alu 1 303 -7 253 222 74 0 chr13 58413491 58413545 -61331353 - L2 LINE L2 -19 3253 3196 30 27 0 0 chr13 58414680 58414717 -61330181 + AT_rich Low_complexity Low_complexity 1 37 0 239 71 24 0 chr13 58417715 58417757 -61327141 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr13 58418040 58418075 -61326823 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 58418367 58418395 -61326503 + AT_rich Low_complexity Low_complexity 1 28 0 42 0 0 0 chr13 58418676 58418718 -61326180 + AT_rich Low_complexity Low_complexity 1 42 0 208 147 0 0 chr13 58418751 58418785 -61326113 + (T)n Simple_repeat Simple_repeat 1 34 0 42709 33 21 1 chr13 58418785 58424813 -61320085 - L1PA2 LINE L1 0 6155 7 419 336 103 17 chr13 58425014 58425246 -61319652 - MIR SINE MIR -9 253 2 33 0 0 0 chr13 58425269 58425302 -61319596 + AT_rich Low_complexity Low_complexity 1 33 0 467 159 38 6 chr13 58425337 58425494 -61319404 + (TA)n Simple_repeat Simple_repeat 1 162 0 1979 143 61 47 chr13 58425501 58425927 -61318971 - L1MA8 LINE L1 -4 6287 5856 1984 208 74 11 chr13 58426280 58426755 -61318143 - LTR22 LTR ERVK -4 505 1 2004 135 0 0 chr13 58428158 58428446 -61316452 - AluY SINE Alu -23 288 1 2994 125 16 57 chr13 58428623 58429119 -61315779 + LTR43 LTR ERV1 1 476 -126 3973 129 58 48 chr13 58429122 58429899 -61314999 - LTR1 LTR ERV1 0 785 1 927 86 0 0 chr13 58429941 58430069 -61314829 + LTR43 LTR ERV1 475 602 0 372 303 99 13 chr13 58431030 58431182 -61313716 - MIR SINE MIR -93 169 5 208 315 99 45 chr13 58431197 58431308 -61313590 - L2 LINE L2 -7 3306 3190 333 292 55 81 chr13 58431807 58432204 -61312694 + L1MC4a LINE L1 5523 5909 -1899 35 71 0 0 chr13 58432829 58432899 -61311999 + AT_rich Low_complexity Low_complexity 1 70 0 283 207 77 0 chr13 58433941 58434013 -61310885 + AluS SINE Alu 1 69 -234 1088 131 61 28 chr13 58434013 58434227 -61310671 + LTR12 LTR ERV1 39 259 -455 327 297 0 0 chr13 58434272 58434373 -61310525 + LTR30 LTR ERV1 524 624 -98 657 202 25 0 chr13 58434373 58434492 -61310406 + LTR12 LTR ERV1 359 480 -234 1636 132 0 20 chr13 58434493 58434743 -61310155 + AluSc SINE Alu 31 275 -34 4063 124 129 103 chr13 58435746 58437209 -61307689 + pTR5 LTR ERV1 741 2438 0 23 54 0 0 chr13 58437432 58437469 -61307429 + AT_rich Low_complexity Low_complexity 1 37 0 2953 127 50 0 chr13 58443100 58443582 -61301316 - L1MA8 LINE L1 -532 5759 5254 591 166 39 46 chr13 58443583 58444004 -61300894 + L1MA8 LINE L1 5749 6172 -119 5818 154 38 48 chr13 58444004 58445253 -61299645 - MER11B LTR ERVK 0 1236 1 591 166 39 46 chr13 58445253 58445330 -61299568 + L1MA8 LINE L1 6172 6245 -46 1900 141 171 8 chr13 58445330 58445698 -61299200 + MSTA LTR MaLR 1 428 0 591 166 39 46 chr13 58445698 58445745 -61299153 + L1MA8 LINE L1 6245 6291 0 1847 170 21 24 chr13 58445923 58446299 -61298599 - THE1C LTR MaLR 0 375 1 494 325 179 11 chr13 58446566 58446945 -61297953 + L3 LINE CR1 270 712 -865 227 254 0 18 chr13 58446944 58446999 -61297899 - L2 LINE L2 -5 3308 3255 * 330 391 31 0 chr13 58447137 58447265 -61297633 + MIR SINE MIR 13 144 -118 231 372 25 25 chr13 58447464 58447585 -61297313 + L3 LINE CR1 1064 1184 -393 1535 347 156 21 chr13 58447811 58449501 -61295397 + L2 LINE L2 856 2773 -541 2522 59 0 7 chr13 58449547 58449854 -61295044 - AluY SINE Alu -6 305 1 291 324 62 59 chr13 58449950 58450240 -61294658 + L2 LINE L2 3023 3313 0 379 287 16 41 chr13 58450404 58450526 -61294372 - MLT1I LTR MaLR -194 215 97 22 0 0 0 chr13 58450603 58450625 -61294273 + AT_rich Low_complexity Low_complexity 1 22 0 357 255 128 14 chr13 58450649 58450790 -61294108 + MER117 DNA MER1_type 41 197 0 263 373 93 24 chr13 58450814 58451061 -61293837 + L3 LINE CR1 1254 1517 -60 1975 96 81 0 chr13 58451752 58452023 -61292875 - AluSx SINE Alu -17 295 3 185 100 50 0 chr13 58452488 58452528 -61292370 + A-rich Low_complexity Low_complexity 6 47 0 487 321 183 43 chr13 58453632 58453699 -61291199 - L2 LINE L2 -365 2949 2893 213 39 0 0 chr13 58453699 58453725 -61291173 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 487 321 183 43 chr13 58453725 58454279 -61290619 - L2 LINE L2 -421 2893 2241 4222 113 2 0 chr13 58454702 58455312 -61289586 + L1PA15 LINE L1 5554 6164 -1 233 324 9 48 chr13 58456423 58456528 -61288370 + L2 LINE L2 2972 3072 -200 313 320 40 7 chr13 58456592 58456742 -61288156 - L2 LINE L2 -674 2640 2486 239 362 94 24 chr13 58456802 58456929 -61287969 + L2 LINE L2 3137 3272 0 25 65 0 0 chr13 58457045 58457091 -61287807 + AT_rich Low_complexity Low_complexity 1 46 0 494 67 67 0 chr13 58457131 58457206 -61287692 + MADE1 DNA Mariner 1 80 0 275 314 38 0 chr13 58457713 58457823 -61287075 + MIR SINE MIR 56 168 -58 1052 264 129 55 chr13 58457878 58458588 -61286310 + MER52A LTR ERV1 3 1474 -147 532 294 6 6 chr13 58458580 58458743 -61286155 + MER52A LTR ERV1 1593 1755 0 * 382 153 42 14 chr13 58459305 58459377 -61285521 + MER84 LTR ERVI 1 74 -433 3392 111 16 14 chr13 58459377 58459882 -61285016 + MER84 LTR ERV1 2 507 0 26 50 0 0 chr13 58461332 58461372 -61283526 + AT_rich Low_complexity Low_complexity 1 40 0 366 295 54 0 chr13 58461386 58461515 -61283383 - MIR SINE MIR -8 254 119 367 342 15 40 chr13 58463009 58463208 -61281690 + L2 LINE L2 88 281 -3033 2007 200 21 0 chr13 58463211 58463586 -61281312 - MLT1B LTR MaLR 0 390 8 216 0 0 0 chr13 58463635 58463659 -61281239 + (T)n Simple_repeat Simple_repeat 1 24 0 207 301 32 32 chr13 58463802 58463895 -61281003 + L2 LINE L2 792 884 -2430 753 352 29 9 chr13 58463988 58464335 -61280563 + L2 LINE L2 1077 1430 -1884 1823 178 85 52 chr13 58464337 58464820 -61280078 + MLT1D LTR MaLR 3 501 -4 333 250 74 14 chr13 58464994 58465210 -61279688 + MER20B DNA MER1_type 548 776 -7 2428 154 48 89 chr13 58465324 58465922 -61278976 + MER4B LTR ERV1 1 574 -36 266 241 11 0 chr13 58466495 58466582 -61278316 + CT-rich Low_complexity Low_complexity 1 88 0 207 0 0 0 chr13 58466630 58466653 -61278245 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 413 314 217 25 chr13 58466733 58467364 -61277534 - L2 LINE L2 0 3313 2554 1225 170 17 42 chr13 58468238 58468479 -61276419 + AluJb SINE Alu 1 235 -77 774 167 132 78 chr13 58469546 58469750 -61275148 + MER20 DNA MER1_type 1 215 -4 500 326 129 29 chr13 58470634 58471155 -61273743 - L2 LINE L2 -917 2397 1825 261 0 0 0 chr13 58471382 58471411 -61273487 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 520 140 11 0 chr13 58471419 58471512 -61273386 + MER53 DNA DNA 29 122 -67 275 157 0 0 chr13 58471575 58471626 -61273272 + MER53 DNA DNA 139 189 0 319 355 59 5 chr13 58471757 58471960 -61272938 - L2 LINE L2 -1904 1410 1197 234 360 102 21 chr13 58472018 58472343 -61272555 - L2 LINE L2 -2258 1056 706 697 278 80 55 chr13 58472385 58472824 -61272074 - MLT1J2 LTR MaLR 0 450 1 25 0 0 0 chr13 58474459 58474484 -61270414 + AT_rich Low_complexity Low_complexity 1 25 0 333 153 0 0 chr13 58474824 58474896 -61270002 + GA-rich Low_complexity Low_complexity 2 73 0 1903 136 24 3 chr13 58474952 58475247 -61269651 + AluSq SINE Alu 2 302 -11 212 371 8 53 chr13 58475609 58475741 -61269157 + MIR SINE MIR 20 145 -63 246 285 39 18 chr13 58475994 58476124 -61268774 + MIR SINE MIR 33 163 -66 4006 205 99 4 chr13 58476264 58477728 -61267170 - L1MB2 LINE L1 -47 6124 4500 594 270 57 0 chr13 58479137 58479296 -61265602 + MIR SINE MIR 81 248 -14 1179 291 316 12 chr13 58479351 58480186 -61264712 + L2 LINE L2 1787 2875 -439 378 318 107 39 chr13 58480217 58480497 -61264401 + L2 LINE L2 2968 3266 -47 927 253 58 14 chr13 58480828 58481105 -61263793 - L1MDa LINE L1 -6218 322 34 1743 82 116 8 chr13 58481262 58481529 -61263369 + AluSc SINE Alu 1 296 -13 22 80 0 0 chr13 58482386 58482436 -61262462 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr13 58482722 58482752 -61262146 + AT_rich Low_complexity Low_complexity 1 30 0 273 213 30 110 chr13 58482806 58482970 -61261928 - MER112 DNA MER1_type -37 223 73 25 31 0 0 chr13 58486488 58486520 -61258378 + AT_rich Low_complexity Low_complexity 1 32 0 276 245 104 47 chr13 58486876 58487068 -61257830 + L2 LINE L2 3111 3313 0 9652 193 65 42 chr13 58487214 58489405 -61255493 + L1M2 LINE L1 1 2240 -4609 2249 181 20 23 chr13 58489403 58489890 -61255008 + L1M2 LINE L1 3889 4374 -2474 * 608 203 0 0 chr13 58489892 58490010 -61254888 + L1M2 LINE L1 5215 5332 -1516 * 1112 180 35 0 chr13 58490009 58490237 -61254661 + L1M2 LINE L1 5870 6105 -743 1271 140 0 0 chr13 58490238 58490445 -61254453 - L1M1 LINE L1 -690 5613 5407 2122 167 35 30 chr13 58491150 58491698 -61253200 - MLT2A2 LTR ERVL 0 554 1 280 352 78 8 chr13 58491804 58491932 -61252966 - L2 LINE L2 -36 3236 3100 187 275 0 0 chr13 58492122 58492162 -61252736 - L2 LINE L2 -479 2835 2796 2170 102 0 0 chr13 58493272 58493557 -61251341 + AluSg SINE Alu 23 307 -3 325 334 152 48 chr13 58493825 58494291 -61250607 + L2 LINE L2 2553 3072 -241 229 281 0 18 chr13 58494614 58494671 -61250227 + L2 LINE L2 3168 3223 -49 24 0 0 0 chr13 58496359 58496383 -61248515 + AT_rich Low_complexity Low_complexity 1 24 0 439 296 91 51 chr13 58496847 58497242 -61247656 - L1ME LINE L1 -495 5667 5257 262 227 93 0 chr13 58497437 58497512 -61247386 - L1 LINE L1 -1156 4990 4909 247 259 40 88 chr13 58497555 58497829 -61247069 - L1 LINE L1 -1334 4812 4552 327 291 150 9 chr13 58497873 58498086 -61246812 - L1 LINE L1 -2615 3531 3289 198 0 0 0 chr13 58498117 58498139 -61246759 + (TC)n Simple_repeat Simple_repeat 1 22 0 509 43 105 12 chr13 58498262 58498424 -61246474 + (TA)n Simple_repeat Simple_repeat 1 177 0 331 67 103 18 chr13 58498445 58498610 -61246288 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 766 102 45 44 chr13 58498577 58499093 -61245805 + (TATAA)n Simple_repeat Simple_repeat 1 516 0 413 159 65 0 chr13 58499096 58499234 -61245664 + (TA)n Simple_repeat Simple_repeat 2 148 0 289 264 67 63 chr13 58499401 58499685 -61245213 - L1 LINE L1 -3137 3009 2725 234 289 67 29 chr13 58499851 58500059 -61244839 - L1 LINE L1 -3549 2597 2382 678 243 276 15 chr13 58500069 58500499 -61244399 + MLT1G LTR MaLR 1 522 -68 256 255 69 29 chr13 58500909 58501011 -61243887 - MLT1J LTR MaLR -369 142 37 212 0 36 0 chr13 58501633 58501661 -61243237 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1202 187 88 3 chr13 58502470 58502764 -61242134 - L1MC3 LINE L1 -8 7777 7459 202 358 211 18 chr13 58503993 58504278 -61240620 - L2 LINE L2 -124 3189 2850 23 0 0 0 chr13 58505211 58505234 -61239664 + AT_rich Low_complexity Low_complexity 1 23 0 1770 114 59 0 chr13 58505234 58505505 -61239393 - AluSx SINE Alu -25 287 1 22 0 0 0 chr13 58505639 58505661 -61239237 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 58507356 58507384 -61237514 + AT_rich Low_complexity Low_complexity 1 28 0 737 196 141 94 chr13 58507428 58507795 -61237103 - MSTC LTR MaLR 0 428 1 1111 259 105 21 chr13 58508095 58508437 -61236461 + L1MC4 LINE L1 7531 7924 -118 405 0 0 0 chr13 58508437 58508482 -61236416 + (TG)n Simple_repeat Simple_repeat 2 46 0 1111 259 105 21 chr13 58508482 58508607 -61236291 + L1MC4 LINE L1 7924 8037 -5 336 337 0 0 chr13 58509056 58509157 -61235741 - L3 LINE CR1 -2 1575 1475 31221 29 0 4 chr13 58509301 58513360 -61231538 + L1PA2 LINE L1 1608 5651 -504 227 77 0 26 chr13 58513360 58513399 -61231499 + (TA)n Simple_repeat Simple_repeat 1 38 0 31221 29 0 4 chr13 58513399 58513901 -61230997 + L1PA2 LINE L1 5651 6153 -2 29 0 0 0 chr13 58513901 58513930 -61230968 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr13 58514430 58514456 -61230442 + AT_rich Low_complexity Low_complexity 1 26 0 203 167 0 0 chr13 58514895 58514931 -61229967 + A-rich Low_complexity Low_complexity 1 36 0 1944 92 3 14 chr13 58514939 58515246 -61229652 + AluSc SINE Alu 3 306 0 180 0 0 0 chr13 58515776 58515796 -61229102 + (A)n Simple_repeat Simple_repeat 1 20 0 480 338 107 28 chr13 58516617 58517049 -61227849 - L1M4 LINE L1 -2258 3888 3423 346 264 24 24 chr13 58517065 58517190 -61227708 - HAL1b LINE L1 -999 349 225 301 314 93 36 chr13 58518465 58518713 -61226185 - L1ME LINE L1 -448 5673 5412 2191 214 33 48 chr13 58518726 58519442 -61225456 - MER21B LTR ERV1 -11 852 98 1264 184 7 149 chr13 58519496 58519613 -61225285 - MLT1A2 LTR MaLR 0 374 242 1867 173 3 10 chr13 58519613 58519926 -61224972 - AluJb SINE Alu 0 312 2 1264 184 7 149 chr13 58519926 58520244 -61224654 - MLT1A2 LTR MaLR -132 242 1 266 217 87 29 chr13 58520244 58520382 -61224516 - L1ME LINE L1 -2408 5400 5255 2004 118 11 3 chr13 58520651 58520938 -61223960 + AluSq SINE Alu 1 289 -24 198 0 0 0 chr13 58520945 58520967 -61223931 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr13 58521160 58521182 -61223716 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr13 58521853 58521887 -61223011 + AT_rich Low_complexity Low_complexity 1 34 0 222 271 0 0 chr13 58523917 58523976 -61220922 + (TG)n Simple_repeat Simple_repeat 2 60 0 248 329 125 52 chr13 58524504 58525024 -61219874 + L2 LINE L2 2260 2817 -497 290 241 43 52 chr13 58525218 58525334 -61219564 + MER115 DNA AcHobo 341 455 -238 793 251 15 20 chr13 58526382 58526585 -61218313 + MIR SINE MIR 46 247 -15 21 36 0 0 chr13 58526654 58526682 -61218216 + AT_rich Low_complexity Low_complexity 1 28 0 275 299 19 9 chr13 58526711 58526818 -61218080 - L1ME LINE L1 -282 5839 5732 1972 138 26 32 chr13 58527668 58528045 -61216853 - THE1C LTR MaLR 0 375 1 22 21 0 62 chr13 58528724 58528772 -61216126 + AT_rich Low_complexity Low_complexity 1 45 0 193 121 0 0 chr13 58529069 58529102 -61215796 - L2 LINE L2 -1 3312 3280 1775 86 18 0 chr13 58529113 58529360 -61215538 - LTR12 LTR ERV1 0 714 51 269 264 0 0 chr13 58529362 58529434 -61215464 - LTR30 LTR ERV1 -98 624 553 813 89 12 0 chr13 58529435 58529604 -61215294 - LTR12 LTR ERV1 -429 285 1 219 278 125 0 chr13 58529604 58529676 -61215222 - L2 LINE L2 -54 3218 3138 639 201 16 46 chr13 58530733 58530927 -61213971 + MER53 DNA DNA 2 189 0 32 67 0 0 chr13 58532271 58532331 -61212567 + AT_rich Low_complexity Low_complexity 1 60 0 25 31 0 0 chr13 58532428 58532460 -61212438 + AT_rich Low_complexity Low_complexity 1 32 0 264 312 55 34 chr13 58532805 58533097 -61211801 + L1M4 LINE L1 4283 4580 -1566 279 0 0 0 chr13 58533301 58533332 -61211566 + (TG)n Simple_repeat Simple_repeat 2 32 0 326 291 34 63 chr13 58533576 58533782 -61211116 + L2 LINE L2 3114 3313 0 239 241 84 0 chr13 58534429 58534512 -61210386 - MER34B LTR ERV1 -64 501 412 1075 183 0 0 chr13 58534515 58534690 -61210208 + AluJb SINE Alu 114 288 -24 8811 103 70 44 chr13 58534711 58536435 -61208463 + L1P3 LINE L1 686 2569 -3892 2452 80 0 0 chr13 58536435 58536746 -61208152 + AluY SINE Alu 1 311 0 8811 103 70 44 chr13 58536746 58537129 -61207769 + L1P3 LINE L1 2569 2940 -3521 349 141 14 0 chr13 58537403 58537462 -61207436 - MER34C LTR ERV1 -465 99 12 1680 253 48 33 chr13 58537473 58537956 -61206942 + MLT1E LTR MaLR 104 593 0 225 203 0 54 chr13 58538084 58538158 -61206740 + L1ME LINE L1 5811 5880 -241 1828 145 8 33 chr13 58538387 58538994 -61205904 + LTR8 LTR ERV1 1 691 0 574 289 52 24 chr13 58539017 58539228 -61205670 + MIR SINE MIR 36 252 -10 22 0 0 0 chr13 58539236 58539258 -61205640 + AT_rich Low_complexity Low_complexity 1 22 0 411 73 0 0 chr13 58539340 58539395 -61205503 + (TG)n Simple_repeat Simple_repeat 2 56 0 252 246 18 0 chr13 58539520 58539577 -61205321 - MIR3 SINE MIR -5 203 146 296 210 12 0 chr13 58539706 58539787 -61205111 + CT-rich Low_complexity Low_complexity 2 83 0 195 146 0 0 chr13 58540260 58540301 -61204597 + (CAA)n Simple_repeat Simple_repeat 2 42 0 257 211 26 0 chr13 58540905 58540981 -61203917 + (TATATG)n Simple_repeat Simple_repeat 3 80 0 1462 76 0 0 chr13 58541249 58541446 -61203452 + L1PA5 LINE L1 5849 6045 -109 226 319 106 18 chr13 58542240 58542353 -61202545 + L2 LINE L2 3186 3308 -5 21 0 0 0 chr13 58543406 58543427 -61201471 + AT_rich Low_complexity Low_complexity 1 21 0 841 246 69 20 chr13 58545931 58546137 -61198761 + LTR40a LTR ERVL 139 415 -104 1508 192 69 0 chr13 58546137 58546454 -61198444 + MER44D DNA MER2_type 1 609 0 841 246 69 20 chr13 58546454 58546563 -61198335 + LTR40a LTR ERVL 415 517 -2 184 373 20 0 chr13 58546604 58546706 -61198192 - L2 LINE L2 -1047 2267 2164 * 3382 86 10 58 chr13 58546693 58547237 -61197661 + MER41A LTR ERV1 40 554 0 321 297 77 28 chr13 58547301 58547483 -61197415 - L2 LINE L2 -1219 2095 1905 2145 111 0 3 chr13 58547767 58548087 -61196811 + AluSg SINE Alu 1 310 0 2165 180 13 40 chr13 58548267 58548740 -61196158 + L1MB7 LINE L1 5725 6184 0 202 269 75 119 chr13 58549449 58549583 -61195315 + L2 LINE L2 2934 3061 -211 1834 170 118 18 chr13 58549937 58550326 -61194572 - MSTA LTR MaLR 0 428 1 350 203 0 0 chr13 58550367 58550421 -61194477 + AluJ/FRAM SINE Alu 228 282 -16 252 0 0 0 chr13 58550421 58550449 -61194449 + (CA)n Simple_repeat Simple_repeat 1 28 0 234 91 0 0 chr13 58550468 58550501 -61194397 + (GA)n Simple_repeat Simple_repeat 2 34 0 25 51 0 0 chr13 58551969 58552008 -61192890 + AT_rich Low_complexity Low_complexity 1 39 0 1676 173 30 0 chr13 58552009 58552280 -61192618 - AluJb SINE Alu -29 283 5 184 288 9 81 chr13 58554750 58554861 -61190037 + L2 LINE L2 3211 3313 0 1571 138 47 108 chr13 58556466 58556828 -61188070 + MER67D LTR ERV1 1 340 -174 25 0 0 0 chr13 58557152 58557177 -61187721 + AT_rich Low_complexity Low_complexity 1 25 0 2223 143 8 6 chr13 58558630 58558993 -61185905 + MER47A DNA MER2_type 3 366 0 312 278 110 21 chr13 58559862 58560053 -61184845 + L1MDa LINE L1 1230 1437 -5103 24 32 0 0 chr13 58560068 58560099 -61184799 + AT_rich Low_complexity Low_complexity 1 31 0 205 161 0 0 chr13 58561450 58561481 -61183417 + T-rich Low_complexity Low_complexity 4 34 0 3993 101 13 0 chr13 58561831 58562376 -61182522 + MER41A LTR ERV1 3 554 0 448 303 87 13 chr13 58562753 58562984 -61181914 - MIR SINE MIR -13 249 2 180 111 0 0 chr13 58564161 58564188 -61180710 + (ATATG)n Simple_repeat Simple_repeat 4 30 0 3025 147 33 2 chr13 58565568 58566052 -61178846 + MER41E LTR ERV1 14 512 0 237 65 0 0 chr13 58566211 58566242 -61178656 + (TG)n Simple_repeat Simple_repeat 2 32 0 801 220 133 82 chr13 58566253 58566476 -61178422 + MLT1D LTR MaLR 1 211 -294 2158 107 7 0 chr13 58566476 58566781 -61178117 + AluSx SINE Alu 1 307 0 801 220 133 82 chr13 58566781 58566940 -61177958 + MLT1D LTR MaLR 211 499 -6 377 333 31 25 chr13 58567013 58567172 -61177726 - MER5A DNA MER1_type 0 189 30 703 224 80 0 chr13 58567683 58567884 -61177014 - L1MB2 LINE L1 -3 6232 6016 2876 187 31 8 chr13 58567885 58568559 -61176339 - L1MB2 LINE L1 -321 5914 5222 1467 221 94 8 chr13 58568564 58568957 -61175941 - MLT2B2 LTR ERVL -88 427 1 3852 240 23 14 chr13 58568962 58570038 -61174860 - L1MB2 LINE L1 -1191 5019 3934 409 252 50 29 chr13 58570211 58570350 -61174548 + LTR43 LTR ERV1 155 296 -306 1646 251 15 0 chr13 58570580 58570979 -61173919 - L1MB2 LINE L1 -2272 3938 3534 2206 133 104 8 chr13 58570981 58571365 -61173533 - MSTA LTR MaLR -7 421 1 1590 220 67 14 chr13 58571365 58571920 -61172978 - L1MB2 LINE L1 -2673 3537 2954 3139 241 40 89 chr13 58571923 58572546 -61172352 - L1MB2 LINE L1 -3312 2898 2246 1969 145 7 0 chr13 58572546 58572836 -61172062 - AluSg SINE Alu -18 292 1 3139 241 40 89 chr13 58572836 58574639 -61170259 - L1MB2 LINE L1 -3964 2246 605 6275 142 31 15 chr13 58574659 58576092 -61168806 - L1M1 LINE L1 -586 5719 4248 327 49 0 0 chr13 58576092 58576133 -61168765 + (TG)n Simple_repeat Simple_repeat 1 41 0 6275 142 31 15 chr13 58576133 58576259 -61168639 - L1M1 LINE L1 -2057 4248 4125 288 306 12 50 chr13 58576567 58576730 -61168168 - L1MB2 LINE L1 -5800 331 1 290 263 20 61 chr13 58576894 58576993 -61167905 + MIR SINE MIR 118 212 -50 7531 29 3 0 chr13 58577605 58578725 -61166173 + L1PA4 LINE L1 5033 6155 0 3761 131 39 89 chr13 58578900 58579727 -61165171 + LTR1 LTR ERV1 1 785 0 4391 190 74 38 chr13 58579730 58580848 -61164050 + HUERS-P2 LTR ERV1 5 1221 -1867 4088 133 60 0 chr13 58580845 58582104 -61162794 + pTR5 LTR ERV1 743 2468 0 * 5273 132 20 4 chr13 58582107 58582897 -61162001 + HUERS-P2 LTR ERV1 1218 2020 -1068 1647 141 8 0 chr13 58582895 58583136 -61161762 + HUERS-P2 LTR ERV1 2846 3088 0 * 1504 153 17 17 chr13 58583179 58583466 -61161432 + LTR1 LTR ERV1 1 287 -498 * 3164 147 42 43 chr13 58583454 58584052 -61160846 + LTR1 LTR ERV1 189 785 0 297 358 93 27 chr13 58584401 58584809 -61160089 + L2 LINE L2 2397 2831 -483 231 260 0 0 chr13 58584802 58584852 -61160046 - L2 LINE L2 -1 3312 3263 * 332 308 73 50 chr13 58585343 58585672 -61159226 + MLT1J2 LTR MaLR 40 390 -19 349 302 39 8 chr13 58585939 58586068 -61158830 - MIR SINE MIR -53 209 77 224 320 60 47 chr13 58586290 58586440 -61158458 + L2 LINE L2 3162 3313 0 1622 223 0 0 chr13 58586652 58586952 -61157946 - AluJb SINE Alu -12 300 1 2223 105 3 0 chr13 58587199 58587495 -61157403 - AluSx SINE Alu -15 297 1 26 30 0 0 chr13 58587759 58587792 -61157106 + AT_rich Low_complexity Low_complexity 1 33 0 22 88 0 0 chr13 58588807 58588864 -61156034 + AT_rich Low_complexity Low_complexity 1 57 0 602 187 7 7 chr13 58590764 58590903 -61153995 + L1MA7 LINE L1 6142 6280 -11 890 199 0 6 chr13 58591945 58592106 -61152792 + FRAM SINE Alu 1 160 -6 238 296 17 34 chr13 58592281 58592412 -61152486 + MIR SINE MIR 76 199 -9 2496 53 3 0 chr13 58592705 58593005 -61151893 + AluY SINE Alu 1 301 -10 6329 158 15 5 chr13 58593007 58595164 -61149734 - L1PB1 LINE L1 -10 6857 4679 1378 126 0 0 chr13 58595164 58595362 -61149536 + THE1A LTR MaLR 158 355 0 7167 106 78 15 chr13 58595362 58596957 -61147941 - L1PB1 LINE L1 -4383 2480 636 972 194 20 0 chr13 58596959 58597155 -61147743 - L1PB1 LINE L1 -6663 200 1 242 299 16 79 chr13 58597621 58597748 -61147150 + L2 LINE L2 3189 3307 -6 482 277 96 55 chr13 58597832 58598052 -61146846 - L2 LINE L2 -193 3120 2892 859 340 61 19 chr13 58598076 58598452 -61146446 - L2 LINE L2 -2876 438 47 360 167 39 50 chr13 58598546 58598726 -61146172 + (TATAA)n Simple_repeat Simple_repeat 3 180 0 25 31 0 0 chr13 58598892 58598924 -61145974 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr13 58599515 58599540 -61145358 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr13 58599986 58600009 -61144889 + AT_rich Low_complexity Low_complexity 1 23 0 307 237 32 122 chr13 58600283 58600439 -61144459 + MER46C DNA MER2_type 22 163 -175 236 381 95 0 chr13 58600516 58600663 -61144235 + L3 LINE CR1 1416 1576 -1 1365 198 24 44 chr13 58600836 58601129 -61143769 - AluJo SINE Alu -24 288 2 25 51 0 0 chr13 58603038 58603077 -61141821 + AT_rich Low_complexity Low_complexity 1 39 0 2483 53 0 0 chr13 58603077 58603379 -61141519 + AluY SINE Alu 1 302 -9 989 180 22 65 chr13 58603379 58603702 -61141196 - L1MC3 LINE L1 -29 7756 7448 2161 113 62 9 chr13 58603714 58604050 -61140848 + THE1B LTR MaLR 9 362 -2 1032 168 118 14 chr13 58604443 58604663 -61140235 + L1PA16 LINE L1 5908 6150 -16 29 28 0 0 chr13 58604663 58604699 -61140199 + AT_rich Low_complexity Low_complexity 1 36 0 2010 169 116 0 chr13 58604893 58605272 -61139626 - MSTA LTR MaLR -5 423 1 381 266 107 62 chr13 58605306 58605607 -61139291 + L1ME LINE L1 1564 2092 -809 28 0 0 0 chr13 58605722 58605750 -61139148 + AT_rich Low_complexity Low_complexity 1 28 0 308 234 28 97 chr13 58605960 58606105 -61138793 + L1ME LINE L1 2449 2583 -3957 1128 244 95 112 chr13 58606310 58607143 -61137755 + L1ME LINE L1 4184 5002 -1538 755 197 0 0 chr13 58607143 58607280 -61137618 - AluSc SINE Alu -33 276 140 702 196 34 14 chr13 58607333 58607481 -61137417 + FRAM SINE Alu 2 152 -14 303 239 276 0 chr13 58607494 58607628 -61137270 + L1ME LINE L1 5038 5208 -1332 766 239 40 5 chr13 58607641 58607842 -61137056 - MER3 DNA MER1_type 0 209 2 310 225 0 25 chr13 58607850 58607930 -61136968 + L1ME LINE L1 5223 5300 -1240 1628 240 70 29 chr13 58608063 58608832 -61136066 + L1ME LINE L1 5385 6183 -375 3081 90 4 29 chr13 58609505 58609960 -61134938 + MLT2A1 LTR ERVL 1 444 0 2151 103 3 0 chr13 58610625 58610916 -61133982 + AluY SINE Alu 1 292 -19 267 220 0 0 chr13 58611604 58611654 -61133244 + L2 LINE L2 3261 3310 -3 23 33 0 0 chr13 58611713 58611743 -61133155 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 58612361 58612391 -61132507 + AT_rich Low_complexity Low_complexity 1 30 0 389 147 27 0 chr13 58612959 58613034 -61131864 + L1PA15 LINE L1 6086 6162 -3 225 200 0 62 chr13 58614001 58614081 -61130817 - HAL1 LINE L1 -1385 1122 1048 350 284 138 34 chr13 58614398 58614666 -61130232 - HAL1 LINE L1 -13 2494 2199 1227 253 75 17 chr13 58614734 58615201 -61129697 - HAL1 LINE L1 -1030 1477 984 322 263 0 42 chr13 58615207 58615302 -61129596 - L1MC4 LINE L1 -1339 6703 6613 264 100 0 0 chr13 58615311 58615351 -61129547 + (CA)n Simple_repeat Simple_repeat 2 41 0 364 266 30 103 chr13 58615616 58615819 -61129079 - HAL1 LINE L1 -1988 519 332 347 299 95 7 chr13 58615864 58616001 -61128897 - HAL1 LINE L1 -2286 221 73 633 203 38 51 chr13 58616157 58616393 -61128505 + pTR5 LTR ERV1 743 975 -1463 3756 136 64 89 chr13 58616634 58617478 -61127420 + LTR12 LTR ERV1 3 825 -1 422 101 43 0 chr13 58617479 58617548 -61127350 + LTR12 LTR ERV1 582 653 -61 558 231 125 8 chr13 58617902 58618158 -61126740 + Charlie4a DNA MER1_type 142 427 -81 30 27 0 0 chr13 58618338 58618375 -61126523 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr13 58618973 58618995 -61125903 + AT_rich Low_complexity Low_complexity 1 22 0 2164 107 3 0 chr13 58619817 58620106 -61124792 + AluSq SINE Alu 1 290 -23 291 322 83 33 chr13 58622305 58622426 -61122472 - L2 LINE L2 -18 3295 3169 2255 77 0 22 chr13 58622528 58622840 -61122058 - AluY SINE Alu -6 305 1 247 114 0 0 chr13 58623104 58623139 -61121759 - U2 snRNA snRNA -152 36 2 221 357 0 0 chr13 58623163 58623233 -61121665 - MIR SINE MIR -122 140 71 1915 120 28 3 chr13 58624270 58624553 -61120345 + AluSx SINE Alu 1 290 -22 2441 51 0 7 chr13 58624559 58624853 -61120045 + AluY SINE Alu 1 292 -19 308 189 41 4 chr13 58624854 58625083 -61119815 + (TA)n Simple_repeat Simple_repeat 1 237 0 225 196 0 0 chr13 58625196 58625242 -61119656 + (CATA)n Simple_repeat Simple_repeat 3 48 0 955 300 59 87 chr13 58625308 58625648 -61119250 + L1MEc LINE L1 251 599 -6008 2028 135 7 0 chr13 58625648 58625951 -61118947 + AluSx SINE Alu 1 305 -7 955 300 59 87 chr13 58625951 58627296 -61117602 + L1MEc LINE L1 599 1889 -4718 3292 104 0 4 chr13 58627346 58627809 -61117089 + L1PA14 LINE L1 5668 6128 -33 452 254 67 36 chr13 58627814 58628038 -61116860 + L1MEc LINE L1 1940 2170 -4437 311 309 39 39 chr13 58628062 58628240 -61116658 + L1MEc LINE L1 2062 2239 -4187 3506 147 78 17 chr13 58628272 58628961 -61115937 + L1PA16 LINE L1 5256 5986 -180 993 171 6 6 chr13 58629064 58629240 -61115658 + L1PA16 LINE L1 5980 6155 -11 591 246 94 27 chr13 58629252 58629549 -61115349 + L1MEc LINE L1 2364 2680 -3927 257 386 49 18 chr13 58629864 58630027 -61114871 + L2 LINE L2 2923 3090 -182 255 311 54 0 chr13 58630550 58630624 -61114274 - L2 LINE L2 -4 3309 3232 35 24 0 0 chr13 58632409 58632451 -61112447 + AT_rich Low_complexity Low_complexity 1 42 0 1920 121 75 0 chr13 58632697 58632979 -61111919 + AluSx SINE Alu 1 303 -9 306 0 0 0 chr13 58636189 58636223 -61108675 + (CA)n Simple_repeat Simple_repeat 1 34 0 1998 194 0 6 chr13 58636582 58636942 -61107956 + MLT1A1 LTR MaLR 1 358 -7 339 202 28 9 chr13 58638363 58638472 -61106426 + CT-rich Low_complexity Low_complexity 2 112 0 434 224 6 19 chr13 58638507 58638663 -61106235 + CT-rich Low_complexity Low_complexity 1 154 0 180 77 0 0 chr13 58639473 58639499 -61105399 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 186 143 0 0 chr13 58640097 58640132 -61104766 + (CA)n Simple_repeat Simple_repeat 2 36 0 342 269 113 38 chr13 58640134 58640320 -61104578 + L1MC4a LINE L1 5760 5959 -1849 257 219 114 81 chr13 58640373 58640496 -61104402 + HAL1 LINE L1 2380 2506 -1 2399 77 0 6 chr13 58640496 58640809 -61104089 + AluY SINE Alu 1 311 0 1682 154 29 7 chr13 58640825 58641143 -61103755 + AluJb SINE Alu 1 324 0 23 54 0 0 chr13 58641331 58641368 -61103530 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr13 58641395 58641418 -61103480 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr13 58641704 58641735 -61103163 + AT_rich Low_complexity Low_complexity 1 31 0 1191 259 115 17 chr13 58641919 58642379 -61102519 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr13 58643501 58643522 -61101376 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 58643631 58643655 -61101243 + AT_rich Low_complexity Low_complexity 1 24 0 1595 229 54 19 chr13 58644166 58644576 -61100322 - MLT1D LTR MaLR -1 504 81 28 29 0 0 chr13 58645299 58645334 -61099564 + AT_rich Low_complexity Low_complexity 1 35 0 844 231 20 40 chr13 58645348 58645547 -61099351 - Charlie1a DNA MER1_type -1241 214 20 200 322 0 0 chr13 58647724 58647783 -61097115 + MIR SINE MIR 204 262 0 2147 149 13 10 chr13 58647999 58648387 -61096511 + L1MA4 LINE L1 5911 6299 -1 364 345 35 0 chr13 58648432 58648577 -61096321 + MIR SINE MIR 52 201 -61 2035 139 150 8 chr13 58648578 58648952 -61095946 - MSTA LTR MaLR 0 428 2 7777 229 31 32 chr13 58648962 58651975 -61092923 + L1PA11 LINE L1 1 4098 -3486 14211 161 43 14 chr13 58651977 58654862 -61090036 + L1PA11 LINE L1 4144 7109 -503 213 65 0 0 chr13 58654862 58654893 -61090005 + (TATAA)n Simple_repeat Simple_repeat 5 35 0 14211 161 43 14 chr13 58654893 58655408 -61089490 + L1PA11 LINE L1 7109 7608 -4 2104 100 13 13 chr13 58655409 58655718 -61089180 + AluSc SINE Alu 1 309 0 257 75 0 25 chr13 58656203 58656243 -61088655 - MADE1 DNA Mariner 0 80 42 198 360 55 43 chr13 58657636 58657711 -61087187 - L2 LINE L2 -10 3262 3189 2308 82 16 0 chr13 58657711 58658017 -61086881 + AluY SINE Alu 1 311 0 198 360 55 43 chr13 58658017 58658105 -61086793 - L2 LINE L2 -83 3189 3097 2185 117 10 0 chr13 58658503 58658810 -61086088 + AluSx SINE Alu 1 310 -2 2016 55 92 22 chr13 58659521 58659792 -61085106 + AluY SINE Alu 1 290 -21 26 30 0 0 chr13 58661343 58661376 -61083522 + AT_rich Low_complexity Low_complexity 1 33 0 456 19 0 0 chr13 58662371 58662424 -61082474 + (TG)n Simple_repeat Simple_repeat 2 54 0 28 29 0 0 chr13 58662586 58662621 -61082277 + AT_rich Low_complexity Low_complexity 1 35 0 473 240 54 85 chr13 58662623 58662748 -61082150 - MER114 LTR ERV -12 636 522 2085 128 0 19 chr13 58662748 58663060 -61081838 + AluSq SINE Alu 1 306 -7 473 240 54 85 chr13 58663060 58663192 -61081706 - MER114 LTR ERV -126 522 387 5098 175 29 11 chr13 58663384 58665212 -61079686 - L1PA16 LINE L1 -1 6165 4271 875 238 15 5 chr13 58665214 58665420 -61079478 + L1PA16 LINE L1 4073 4280 -1866 290 139 56 42 chr13 58665421 58665493 -61079405 + MER113 DNA MER1_type? 117 189 -332 581 250 109 18 chr13 58665571 58665847 -61079051 - MER114 LTR ERV -268 380 80 1448 91 4 4 chr13 58665847 58666071 -61078827 - pTR5 LTR ERV1 -2046 392 67 311 274 10 0 chr13 58666071 58666173 -61078725 - LTR30 LTR ERV1 -79 643 541 3347 125 101 92 chr13 58666173 58667050 -61077848 - pTR5 LTR ERV1 -417 2021 833 349 161 0 0 chr13 58667051 58667113 -61077785 - MER114 LTR ERV -565 83 22 1992 88 64 0 chr13 58667230 58667513 -61077385 - AluY SINE Alu -10 301 1 21 0 0 0 chr13 58667513 58667534 -61077364 + AT_rich Low_complexity Low_complexity 1 21 0 899 136 0 0 chr13 58667534 58667666 -61077232 - AluY SINE Alu -179 132 1 222 156 0 0 chr13 58669110 58669155 -61075743 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 312 256 120 17 chr13 58669173 58669196 -61075702 - L1MA10 LINE L1 -19 6315 6293 787 279 30 61 chr13 58669196 58669670 -61075228 - L1ME1 LINE L1 -45 6121 5663 640 229 20 7 chr13 58669670 58669823 -61075075 + L1ME LINE L1 5299 5453 -713 360 269 76 0 chr13 58669825 58669944 -61074954 + MER65B LTR ERV1 1 128 -403 611 270 63 58 chr13 58669948 58670311 -61074587 + MER65A LTR ERV1 79 443 -2 588 292 20 12 chr13 58670313 58670556 -61074342 + L1ME LINE L1 5452 5667 -499 288 263 111 20 chr13 58670557 58670656 -61074242 + MIR SINE MIR 64 171 -91 789 167 8 0 chr13 58670754 58670886 -61074012 + FLAM_C SINE Alu 1 133 0 1745 169 18 70 chr13 58671278 58671662 -61073236 + MLT1A1 LTR MaLR 1 364 -1 2195 153 5 13 chr13 58674032 58674405 -61070493 - THE1C LTR MaLR -1 374 5 207 299 54 68 chr13 58675810 58675957 -61068941 - L2 LINE L2 -5 3308 3164 265 306 107 42 chr13 58676615 58676971 -61067927 + L1MC/D LINE L1 4672 5050 -1096 24 0 0 0 chr13 58677034 58677058 -61067840 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr13 58677058 58677083 -61067815 + (TG)n Simple_repeat Simple_repeat 2 26 0 325 277 60 36 chr13 58677222 58677388 -61067510 + L1MC/D LINE L1 5306 5475 -2333 450 367 20 14 chr13 58677871 58678134 -61066764 + MIR SINE MIR 1 262 0 28 48 0 0 chr13 58678848 58678890 -61066008 + AT_rich Low_complexity Low_complexity 1 42 0 253 340 32 11 chr13 58679354 58679448 -61065450 - L2 LINE L2 0 3313 3218 261 330 80 35 chr13 58679549 58679749 -61065149 - MIR SINE MIR -17 245 37 436 203 156 0 chr13 58680150 58680278 -61064620 + MER53 DNA DNA 40 187 -2 2132 84 3 52 chr13 58681944 58682254 -61062644 + AluSg SINE Alu 1 295 -15 9433 183 35 22 chr13 58682261 58682385 -61062513 + L1MA7 LINE L1 3275 3396 -2895 2365 83 7 0 chr13 58682385 58682685 -61062213 + AluSc SINE Alu 3 304 -5 9433 183 35 22 chr13 58682685 58683452 -61061446 + L1MA7 LINE L1 3396 4152 -2139 195 42 0 0 chr13 58683452 58683476 -61061422 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 9433 183 35 22 chr13 58683476 58685550 -61059348 + L1MA7 LINE L1 4152 6286 -5 478 222 0 0 chr13 58686553 58686643 -61058255 + MER3 DNA MER1_type 1 90 -119 * 714 199 82 0 chr13 58686604 58686750 -61058148 - MER3 DNA MER1_type -4 205 48 602 272 130 47 chr13 58687433 58687687 -61057211 - L3 LINE CR1 -1057 520 246 2780 76 0 0 chr13 58689364 58689719 -61055179 - THE1A LTR MaLR 0 355 1 186 71 0 0 chr13 58690220 58690248 -61054650 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr13 58690988 58691009 -61053889 + AT_rich Low_complexity Low_complexity 1 21 0 409 292 130 35 chr13 58691074 58691358 -61053540 - MLT1J1 LTR MaLR -115 331 21 185 382 11 0 chr13 58692065 58692154 -61052744 - L2 LINE L2 -1732 1582 1493 248 241 26 103 chr13 58693169 58693285 -61051613 - L3 LINE CR1 -7 1570 1464 24 32 0 0 chr13 58693888 58693919 -61050979 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 58694346 58694367 -61050531 + AT_rich Low_complexity Low_complexity 1 21 0 242 125 21 0 chr13 58694452 58694500 -61050398 + (TA)n Simple_repeat Simple_repeat 1 49 0 2012 114 0 13 chr13 58694575 58694873 -61050025 + AluSg SINE Alu 17 310 0 220 319 126 25 chr13 58695911 58696030 -61048868 + L3 LINE CR1 366 496 -1081 217 371 57 0 chr13 58697230 58697335 -61047563 + MIR SINE MIR 56 166 -96 191 308 39 13 chr13 58697487 58697565 -61047333 + L3 LINE CR1 628 707 -870 22 35 0 0 chr13 58699083 58699112 -61045786 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr13 58699646 58699670 -61045228 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 474 178 195 81 chr13 58699841 58700015 -61044883 - MLT1A1 LTR MaLR -171 194 1 1138 213 143 27 chr13 58700087 58700415 -61044483 + MLT1A2 LTR MaLR 5 370 -4 493 56 125 2 chr13 58700676 58701154 -61043744 + (TA)n Simple_repeat Simple_repeat 1 536 0 290 79 56 79 chr13 58701121 58701299 -61043599 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 * 327 341 54 45 chr13 58702180 58702304 -61042594 - LTR16C LTR ERVL 0 491 370 2110 204 35 2 chr13 58702304 58702756 -61042142 - MLT1C LTR MaLR 0 467 1 327 341 54 45 chr13 58702756 58702962 -61041936 - LTR16C LTR ERVL -121 370 158 270 287 66 59 chr13 58703579 58703715 -61041183 + L3 LINE CR1 423 559 -1018 347 340 40 67 chr13 58704580 58704880 -61040018 - LTR16A LTR ERVL -10 440 149 298 211 11 21 chr13 58705397 58705492 -61039406 + (TATG)n Simple_repeat Simple_repeat 3 96 0 22 35 0 0 chr13 58705558 58705587 -61039311 + AT_rich Low_complexity Low_complexity 1 29 0 1740 220 8 3 chr13 58705736 58706099 -61038799 - MLT1A1 LTR MaLR 0 365 1 11139 159 53 6 chr13 58706168 58708159 -61036739 + Ricksha_c DNA DNA 8 2046 0 22 56 0 0 chr13 58709313 58709349 -61035549 + AT_rich Low_complexity Low_complexity 1 36 0 275 293 130 8 chr13 58710055 58710178 -61034720 + L2 LINE L2 3168 3305 -8 185 373 75 0 chr13 58710367 58710434 -61034464 - L2 LINE L2 -52 3220 3149 342 0 0 0 chr13 58711333 58711371 -61033527 + (CA)n Simple_repeat Simple_repeat 2 39 0 197 280 235 8 chr13 58712861 58712993 -61031905 + MIR SINE MIR 101 262 0 1634 122 3 81 chr13 58713057 58713421 -61031477 - MER4A LTR ERV1 0 664 261 551 175 0 10 chr13 58713423 58713520 -61031378 - MER4A LTR ERV1 -568 96 1 372 320 47 31 chr13 58714639 58714830 -61030068 - L1MC4 LINE L1 -932 7110 6880 2151 251 22 45 chr13 58714836 58715506 -61029392 - L1ME1 LINE L1 -5 6161 5507 2289 214 127 100 chr13 58715533 58715761 -61029137 - L1ME1 LINE L1 -757 5389 5169 1832 134 55 7 chr13 58715761 58716052 -61028846 + AluSx SINE Alu 1 305 -7 2289 214 127 100 chr13 58716052 58716556 -61028342 - L1ME1 LINE L1 -977 5169 4680 2083 117 7 3 chr13 58716556 58716856 -61028042 + AluSx SINE Alu 2 302 -10 2289 214 127 100 chr13 58716856 58717582 -61027316 - L1ME1 LINE L1 -1466 4680 3909 377 257 186 9 chr13 58717646 58717856 -61027042 - L1MC4 LINE L1 -1907 5901 5655 414 276 76 36 chr13 58717869 58718119 -61026779 - L1MC4 LINE L1 -2294 5514 5255 26 30 0 0 chr13 58718150 58718183 -61026715 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr13 58718318 58718348 -61026550 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr13 58718377 58718398 -61026500 + (TA)n Simple_repeat Simple_repeat 2 22 0 279 0 0 0 chr13 58720007 58720038 -61024860 + (CA)n Simple_repeat Simple_repeat 2 32 0 1678 176 17 3 chr13 58720411 58720701 -61024197 + AluJb SINE Alu 1 294 -18 214 244 0 0 chr13 58721037 58721078 -61023820 + polypurine Low_complexity Low_complexity 2 42 0 209 301 88 26 chr13 58721079 58721192 -61023706 + L2 LINE L2 1698 1817 -1497 2193 175 82 62 chr13 58721224 58721807 -61023091 - LTR49 LTR ERV1 0 595 1 2320 211 30 18 chr13 58721910 58722408 -61022490 - LTR49-int LTR ERV1 -4098 2233 1730 1106 175 130 33 chr13 58722465 58722796 -61022102 + LTR49 LTR ERV1 238 595 0 352 186 28 117 chr13 58722830 58722975 -61021923 - LTR49-int LTR ERV1 -4610 1721 1590 4730 212 69 52 chr13 58723512 58724865 -61020033 - LTR49-int LTR ERV1 -4955 1376 1 688 123 9 9 chr13 58724867 58724981 -61019917 - LTR49 LTR ERV1 0 595 482 6962 140 199 19 chr13 58724985 58726423 -61018475 - pTR5 LTR ERV1 0 2438 742 297 159 58 29 chr13 58726427 58726496 -61018402 - LTR48 LTR ERV1 -115 672 602 * 1773 157 108 59 chr13 58726477 58726886 -61018012 - LTR49 LTR ERV1 -160 435 7 538 92 0 0 chr13 58727127 58727203 -61017695 - LTR24 LTR ERV1 0 467 392 689 84 19 19 chr13 58727206 58727313 -61017585 - LTR23 LTR ERV1 -330 107 1 448 257 84 55 chr13 58727527 58727729 -61017169 + L2 LINE L2 1866 2073 -1241 3756 137 33 80 chr13 58727824 58728647 -61016251 - LTR1 LTR ERV1 -1 784 1 244 417 48 21 chr13 58728769 58729059 -61015839 + L2 LINE L2 2809 3106 -166 2064 120 0 0 chr13 58729526 58729837 -61015061 + AluY SINE Alu 1 311 0 31 0 0 0 chr13 58729935 58729966 -61014932 + AT_rich Low_complexity Low_complexity 1 31 0 327 96 0 0 chr13 58730113 58730165 -61014733 + (TG)n Simple_repeat Simple_repeat 2 53 0 2358 153 66 18 chr13 58730165 58730602 -61014296 - LOR1b LTR ERV1 -3 458 1 28 0 0 0 chr13 58731662 58731690 -61013208 + AT_rich Low_complexity Low_complexity 1 28 0 285 140 0 40 chr13 58731694 58731744 -61013154 - AluJo SINE Alu -14 288 241 1363 166 36 0 chr13 58731810 58732033 -61012865 - AluJo SINE Alu -81 231 1 3676 93 205 0 chr13 58732281 58732852 -61012046 + LTR12 LTR ERV1 1 688 0 21 0 0 0 chr13 58733374 58733395 -61011503 + AT_rich Low_complexity Low_complexity 1 21 0 232 387 73 0 chr13 58733625 58733749 -61011149 - L3b LINE CR1 -55 1528 1396 228 284 0 62 chr13 58734876 58734957 -61009941 - L2 LINE L2 -1 3312 3237 21 36 0 0 chr13 58736174 58736202 -61008696 + AT_rich Low_complexity Low_complexity 1 28 0 219 139 0 0 chr13 58736224 58736260 -61008638 + (TA)n Simple_repeat Simple_repeat 1 36 0 16577 95 4 3 chr13 58737710 58740936 -61003962 + L1PA7 LINE L1 2914 6154 0 1485 169 28 0 chr13 58741741 58742031 -61002867 + L1MA8 LINE L1 5994 6291 0 270 224 13 40 chr13 58742840 58742916 -61001982 + MIR3 SINE MIR 130 203 -5 299 305 107 23 chr13 58744877 58745054 -60999844 - MIR3 SINE MIR -7 201 10 2275 118 0 6 chr13 58745581 58745895 -60999003 - AluSx SINE Alu 0 312 1 204 195 24 49 chr13 58746069 58746151 -60998747 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 210 246 53 0 chr13 58746790 58746847 -60998051 + L3b LINE CR1 1330 1389 -194 693 266 35 46 chr13 58746868 58747093 -60997805 - MIR SINE MIR 0 262 38 1374 184 71 4 chr13 58747093 58747393 -60997505 + AluJb SINE Alu 1 318 0 693 266 35 46 chr13 58747393 58747425 -60997473 - MIR SINE MIR -224 38 7 1970 93 10 58 chr13 58747491 58747802 -60997096 + AluSg SINE Alu 1 296 -14 244 337 10 20 chr13 58747808 58747906 -60996992 - MIR3 SINE MIR -54 154 58 22 0 0 0 chr13 58749838 58749860 -60995038 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr13 58750193 58750218 -60994680 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 346 313 0 0 chr13 58750834 58750933 -60993965 - L2 LINE L2 0 3313 3215 26 30 0 0 chr13 58751112 58751145 -60993753 + AT_rich Low_complexity Low_complexity 1 33 0 1119 276 107 40 chr13 58751947 58752490 -60992408 + MLT1K LTR MaLR 2 580 -8 265 350 36 36 chr13 58752876 58753016 -60991882 + L2 LINE L2 2329 2468 -846 1279 218 20 82 chr13 58753033 58753162 -60991736 - MLT1A2 LTR MaLR -8 366 231 2297 154 3 3 chr13 58753162 58753526 -60991372 - THE1B LTR MaLR 0 364 1 1279 218 20 82 chr13 58753526 58753678 -60991220 - MLT1A2 LTR MaLR -143 231 113 2035 97 4 0 chr13 58753678 58753945 -60990953 - AluSp SINE Alu -13 300 33 1279 218 20 82 chr13 58753945 58754052 -60990846 - MLT1A2 LTR MaLR -261 113 1 334 429 51 7 chr13 58754052 58754327 -60990571 + L2 LINE L2 2469 2755 -559 207 114 0 0 chr13 58754457 58754492 -60990406 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 58754738 58754759 -60990139 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr13 58754848 58754880 -60990018 + AT_rich Low_complexity Low_complexity 1 32 0 527 324 89 0 chr13 58755269 58755482 -60989416 + MIR SINE MIR 1 232 -30 220 175 18 18 chr13 58755482 58755539 -60989359 + (TTATA)n Simple_repeat Simple_repeat 2 58 0 270 235 29 0 chr13 58755585 58755653 -60989245 + MER103 DNA DNA 34 103 -63 22 0 0 0 chr13 58757711 58757733 -60987165 + AT_rich Low_complexity Low_complexity 1 22 0 2380 82 0 10 chr13 58757749 58758055 -60986843 - AluSq SINE Alu -10 303 1 253 218 61 51 chr13 58758055 58758214 -60986684 - MIR SINE MIR -16 246 32 236 328 144 23 chr13 58758301 58758475 -60986423 - L3 LINE CR1 -208 1369 1175 808 147 0 8 chr13 58758591 58758720 -60986178 + AluSq/x SINE Alu 4 131 -181 180 0 0 0 chr13 58759238 58759258 -60985640 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr13 58760173 58760194 -60984704 + AT_rich Low_complexity Low_complexity 1 21 0 189 219 134 61 chr13 58760960 58761042 -60983856 + MIR SINE MIR 121 208 -54 27 49 0 0 chr13 58761906 58761947 -60982951 + AT_rich Low_complexity Low_complexity 1 41 0 182 359 103 17 chr13 58764291 58764408 -60980490 + MIR3 SINE MIR 1 127 -81 3051 64 31 0 chr13 58764806 58765235 -60979663 - L1P5 LINE L1 -370 5781 5338 263 271 12 12 chr13 58766180 58766265 -60978633 + MIR SINE MIR 74 158 -104 2321 244 40 33 chr13 58767977 58768707 -60976191 - L1ME2 LINE L1 -7 6157 5423 319 229 73 0 chr13 58768809 58768918 -60975980 - L1ME2 LINE L1 -810 5370 5254 2881 125 56 25 chr13 58768975 58769104 -60975794 - L1M1 LINE L1 -566 5739 5616 1853 157 10 16 chr13 58769104 58769416 -60975482 - AluSx SINE Alu -2 310 1 2881 125 56 25 chr13 58769416 58769911 -60974987 - L1M1 LINE L1 -689 5616 5070 1402 250 102 39 chr13 58769953 58770618 -60974280 - L1ME2 LINE L1 -1784 4362 3656 454 237 89 12 chr13 58770887 58771056 -60973842 + L1ME3A LINE L1 5988 6169 -1 1568 214 45 19 chr13 58771576 58771955 -60972943 - MLT1B LTR MaLR -1 389 1 204 381 66 33 chr13 58772467 58772711 -60972187 + L2 LINE L2 2642 2893 -421 244 233 84 69 chr13 58773442 58773644 -60971254 - MER113 DNA MER1_type? -298 223 19 363 303 144 5 chr13 58773872 58774060 -60970838 - L2 LINE L2 -1210 2104 1891 28 0 0 0 chr13 58774376 58774404 -60970494 + AT_rich Low_complexity Low_complexity 1 28 0 830 100 0 0 chr13 58774727 58774837 -60970061 + AluY SINE Alu 189 298 -13 363 336 58 13 chr13 58774837 58775063 -60969835 - L2 LINE L2 -1036 2278 2043 919 174 0 0 chr13 58777568 58777723 -60967175 - FRAM SINE Alu -8 168 14 3910 138 35 70 chr13 58778284 58779095 -60965803 + LTR1 LTR ERV1 3 784 -1 578 285 85 0 chr13 58779480 58779645 -60965253 + MIR SINE MIR 67 245 -17 216 200 0 0 chr13 58779648 58779688 -60965210 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 199 330 155 3 chr13 58780105 58780247 -60964651 - MIR SINE MIR -71 191 30 1764 158 78 0 chr13 58781702 58782037 -60962861 + MER46B DNA MER2_type 1 236 0 1080 117 0 0 chr13 58782439 58782635 -60962263 - L1PA16 LINE L1 -4 6162 5877 1833 161 3 16 chr13 58782639 58782955 -60961943 - AluJo SINE Alu 0 312 1 337 240 77 19 chr13 58783107 58783211 -60961687 + LTR16A1 LTR ERVL 245 354 -103 245 374 46 8 chr13 58784904 58785035 -60959863 - L2 LINE L2 -15 3257 3122 226 246 0 0 chr13 58785038 58785095 -60959803 + A-rich Low_complexity Low_complexity 1 57 0 459 79 45 11 chr13 58785318 58785407 -60959491 + CT-rich Low_complexity Low_complexity 3 94 0 1895 172 10 34 chr13 58787926 58788310 -60956588 - THE1C LTR MaLR 0 375 1 9474 129 21 57 chr13 58788310 58789949 -60954949 - THE1C-int LTR MaLR 0 1580 1 1809 166 18 44 chr13 58789949 58790334 -60954564 - THE1C LTR MaLR 0 375 1 1447 169 44 0 chr13 58790518 58790588 -60954310 + AluJb SINE Alu 48 113 -199 285 29 0 0 chr13 58790588 58790622 -60954276 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1447 169 44 0 chr13 58790622 58790800 -60954098 + AluJb SINE Alu 113 307 -5 225 353 135 24 chr13 58790900 58791189 -60953709 - L2 LINE L2 -428 2886 2566 230 366 63 37 chr13 58791583 58791774 -60953124 - MIR SINE MIR -45 217 22 315 314 112 16 chr13 58793590 58793778 -60951120 + MIR SINE MIR 1 206 -56 249 83 0 0 chr13 58794058 58794094 -60950804 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 1782 136 0 4 chr13 58794220 58794485 -60950413 + AluJb SINE Alu 33 296 -16 446 297 21 52 chr13 58795807 58795999 -60948899 - MIR3 SINE MIR -13 195 10 2848 244 64 16 chr13 58796938 58797803 -60947095 + L1MC4 LINE L1 7130 8035 -7 587 294 57 36 chr13 58797864 58798112 -60946786 - MIR SINE MIR -6 256 4 254 260 39 52 chr13 58798287 58798364 -60946534 + L2 LINE L2 3238 3313 0 182 307 124 29 chr13 58799881 58800018 -60944880 + MIR3 SINE MIR 32 181 -27 1290 121 11 0 chr13 58800028 58800210 -60944688 - Tigger3(Golem) DNA MER2_type -1 3028 2845 241 233 0 0 chr13 58800407 58800480 -60944418 - L1M4 LINE L1 -968 5989 5917 * 398 237 155 63 chr13 58800452 58800818 -60944080 - L1MEc LINE L1 -5173 1809 1344 601 348 33 17 chr13 58801112 58801414 -60943484 - L1MEc LINE L1 -6031 1107 801 224 313 46 46 chr13 58802899 58803030 -60941868 - MIR SINE MIR -129 133 3 1877 105 122 98 chr13 58804607 58804678 -60940220 - MSTA LTR MaLR 0 428 360 2152 142 0 3 chr13 58804678 58804989 -60939909 + AluSx SINE Alu 1 310 -2 2040 154 3 3 chr13 58804997 58805309 -60939589 + AluSx SINE Alu 1 312 0 1877 105 122 98 chr13 58805309 58805646 -60939252 - MSTA LTR MaLR -74 354 1 429 279 134 30 chr13 58806321 58806590 -60938308 + MLT1L LTR MaLR 312 608 -7 239 306 109 20 chr13 58806735 58806882 -60938016 - L3 LINE CR1 -6 1571 1412 21 82 0 0 chr13 58807351 58807400 -60937498 + AT_rich Low_complexity Low_complexity 1 49 0 390 280 21 11 chr13 58810233 58810326 -60934572 + MER5A DNA MER1_type 96 189 0 22 0 0 0 chr13 58811243 58811265 -60933633 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr13 58811360 58811389 -60933509 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 58814267 58814288 -60930610 + AT_rich Low_complexity Low_complexity 1 21 0 280 309 132 26 chr13 58814462 58814614 -60930284 - MIR SINE MIR -10 252 85 1804 183 71 26 chr13 58815148 58815682 -60929216 - MLT2A2 LTR ERVL 0 554 1 355 260 102 73 chr13 58816009 58816071 -60928827 - LTR33 LTR ERVL -63 458 399 1787 255 112 11 chr13 58816071 58816608 -60928290 + MLT1E LTR MaLR 3 593 0 355 260 102 73 chr13 58816608 58816852 -60928046 - LTR33 LTR ERVL -122 399 112 470 156 0 13 chr13 58816903 58816980 -60927918 - MLT1C LTR MaLR 0 467 392 2129 154 6 6 chr13 58816992 58817322 -60927576 + MER1B DNA MER1_type 10 339 0 1377 230 55 18 chr13 58817322 58817702 -60927196 - MLT1C LTR MaLR -71 396 3 25 83 0 0 chr13 58818542 58818602 -60926296 + AT_rich Low_complexity Low_complexity 1 60 0 2565 50 0 3 chr13 58818860 58819163 -60925735 + AluY SINE Alu 1 302 -9 196 371 34 34 chr13 58819391 58819569 -60925329 + L2 LINE L2 2345 2522 -792 421 243 126 9 chr13 58819614 58819725 -60925173 + MIR SINE MIR 69 192 -70 27 49 0 0 chr13 58821586 58821627 -60923271 + AT_rich Low_complexity Low_complexity 1 41 0 2917 116 14 0 chr13 58821752 58822174 -60922724 - MSTA LTR MaLR 0 428 1 222 37 0 0 chr13 58823198 58823225 -60921673 + (A)n Simple_repeat Simple_repeat 1 27 0 217 213 0 66 chr13 58823343 58823404 -60921494 - L2 LINE L2 -93 3220 3164 230 266 16 0 chr13 58823434 58823498 -60921400 - MIR SINE MIR 0 262 198 1036 275 85 37 chr13 58823498 58823934 -60920964 + LTR16A1 LTR ERVL 1 457 0 582 287 81 6 chr13 58823942 58824116 -60920782 - MIR SINE MIR -68 194 8 22 35 0 0 chr13 58824597 58824626 -60920272 + AT_rich Low_complexity Low_complexity 1 29 0 1658 157 18 24 chr13 58824866 58825197 -60919701 - L1MA7 LINE L1 -1 6290 5962 612 264 10 46 chr13 58825750 58825947 -60918951 + MIR SINE MIR 5 194 -68 662 206 4 138 chr13 58827462 58827640 -60917258 - MER20 DNA MER1_type 0 219 83 2244 97 3 0 chr13 58827640 58827929 -60916969 + AluSp SINE Alu 10 299 -14 662 206 4 138 chr13 58827929 58828003 -60916895 - MER20 DNA MER1_type -136 83 1 260 321 0 0 chr13 58828012 58828096 -60916802 + MLT1J LTR MaLR 95 178 -333 251 331 81 29 chr13 58828379 58828551 -60916347 + MIR SINE MIR 81 261 -1 25 51 0 0 chr13 58829391 58829430 -60915468 + AT_rich Low_complexity Low_complexity 1 39 0 410 316 0 15 chr13 58830740 58830873 -60914025 + MIR SINE MIR 126 256 -6 189 287 17 113 chr13 58831454 58831569 -60913329 - L2 LINE L2 -10 3303 3200 322 274 88 84 chr13 58831823 58832097 -60912801 - L2 LINE L2 -462 2852 2578 2038 146 7 0 chr13 58832142 58832444 -60912454 + AluSx SINE Alu 1 304 -8 1107 223 31 66 chr13 58832754 58833148 -60911750 + MLT2B1 LTR ERVL 13 412 -2 416 254 85 39 chr13 58833198 58833328 -60911570 - MIR SINE MIR -115 147 12 2031 108 3 49 chr13 58833639 58833945 -60910953 + AluSg SINE Alu 1 292 -18 409 238 8 63 chr13 58834311 58834437 -60910461 - MER5C DNA MER1_type -202 122 4 209 281 42 103 chr13 58834509 58834772 -60910126 - L2 LINE L2 -801 2513 2267 6026 104 16 0 chr13 58834837 58836177 -60908721 + L1PA13 LINE L1 4806 6163 0 358 233 27 123 chr13 58836218 58836253 -60908645 - MIR SINE MIR -72 190 153 2176 80 17 3 chr13 58836253 58836541 -60908357 - AluY SINE Alu -19 292 1 358 233 27 123 chr13 58836541 58836651 -60908247 - MIR SINE MIR -109 153 59 21 0 0 0 chr13 58836708 58836729 -60908169 + AT_rich Low_complexity Low_complexity 1 21 0 2140 112 10 3 chr13 58837513 58837818 -60907080 - AluSc SINE Alu -2 307 1 236 330 89 9 chr13 58837850 58837962 -60906936 + MIR SINE MIR 13 133 -129 224 122 24 0 chr13 58839183 58839224 -60905674 + CT-rich Low_complexity Low_complexity 1 42 0 1101 218 105 49 chr13 58839615 58839959 -60904939 - MLT1A1 LTR MaLR -2 363 1 384 284 41 59 chr13 58839965 58840134 -60904764 + MIR SINE MIR 65 230 -32 296 339 95 12 chr13 58840157 58840325 -60904573 + L3 LINE CR1 1395 1576 -1 235 317 134 27 chr13 58840423 58840647 -60904251 - MLT1L LTR MaLR -5 610 363 2068 114 3 3 chr13 58841678 58841968 -60902930 + AluY SINE Alu 1 290 -21 22 0 0 0 chr13 58842233 58842255 -60902643 + AT_rich Low_complexity Low_complexity 1 22 0 196 320 120 53 chr13 58843947 58844097 -60900801 + MIR SINE MIR 57 216 -46 312 206 143 24 chr13 58844278 58844404 -60900494 + MLT1K LTR MaLR 374 514 -74 208 260 65 52 chr13 58845436 58845513 -60899385 - L2 LINE L2 -39 3233 3156 902 332 226 14 chr13 58845978 58846911 -60897987 + L3 LINE CR1 446 1576 -1 1620 196 0 23 chr13 58848328 58848634 -60896264 + AluJb SINE Alu 1 299 -13 349 303 117 7 chr13 58850004 58850149 -60894749 - MIR SINE MIR -51 211 51 22 35 0 0 chr13 58852129 58852158 -60892740 + AT_rich Low_complexity Low_complexity 1 29 0 473 280 20 7 chr13 58854341 58854491 -60890407 + MER63 DNA MER1_type 1 778 -284 621 218 181 58 chr13 58854493 58854719 -60890179 - MLT1E LTR MaLR 0 567 321 2031 93 127 30 chr13 58855002 58855334 -60889564 - THE1B LTR MaLR 0 364 1 11224 100 21 4 chr13 58855334 58856888 -60888010 - THE1B-int LTR MaLR 0 1580 1 2338 114 48 14 chr13 58856888 58857240 -60887658 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr13 58857258 58857281 -60887617 + AT_rich Low_complexity Low_complexity 1 23 0 1674 176 0 45 chr13 58857370 58857683 -60887215 - AluJo SINE Alu -1 311 13 672 289 92 36 chr13 58857697 58858108 -60886790 + LTR68 LTR ERV1 1 434 -306 1157 354 59 33 chr13 58858285 58859014 -60885884 + L2 LINE L2 270 1017 -2297 322 319 87 84 chr13 58859031 58859781 -60885117 + L2 LINE L2 2284 3053 -219 23 54 0 0 chr13 58859874 58859911 -60884987 + AT_rich Low_complexity Low_complexity 1 37 0 270 0 0 0 chr13 58860580 58860610 -60884288 + (CA)n Simple_repeat Simple_repeat 2 31 0 467 274 20 39 chr13 58861225 58861429 -60883469 - L2 LINE L2 0 3313 3114 201 39 0 0 chr13 58861572 58861598 -60883300 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 210 294 20 0 chr13 58861701 58861752 -60883146 - L2 LINE L2 -485 2829 2778 1530 327 103 43 chr13 58861793 58862234 -60882664 - L2 LINE L2 -672 2642 2229 2033 108 3 36 chr13 58862234 58862539 -60882359 + AluY SINE Alu 1 295 -16 1530 327 103 43 chr13 58862539 58862983 -60881915 - L2 LINE L2 -1085 2229 1813 231 36 0 0 chr13 58862983 58863011 -60881887 + (TA)n Simple_repeat Simple_repeat 2 29 0 1530 327 103 43 chr13 58863011 58863465 -60881433 - L2 LINE L2 -1501 1813 1222 208 121 0 0 chr13 58863579 58863612 -60881286 + (TG)n Simple_repeat Simple_repeat 2 34 0 2799 7 0 0 chr13 58863928 58864231 -60880667 - AluYa5 SINE Alu -8 303 1 38 39 0 0 chr13 58865135 58865187 -60879711 + AT_rich Low_complexity Low_complexity 1 52 0 3235 137 42 2 chr13 58866569 58867122 -60877776 + Tigger3b DNA MER2_type 1 575 -656 387 259 183 15 chr13 58868873 58869004 -60875894 - MIR3 SINE MIR -16 192 40 306 303 78 26 chr13 58869082 58869299 -60875599 + MER112 DNA MER1_type 5 236 -24 1604 181 46 0 chr13 58869299 58869580 -60875318 - AluJo SINE Alu -18 294 1 306 303 78 26 chr13 58869580 58869593 -60875305 + MER112 DNA MER1_type 236 247 -13 2171 117 3 0 chr13 58872554 58872853 -60872045 - AluSq SINE Alu -13 300 1 1486 121 152 8 chr13 58972994 58973251 -60771647 - AluSq SINE Alu -9 294 1 841 275 43 102 chr13 58973266 58973757 -60771141 + MLT1F1 LTR MaLR 72 533 -34 230 132 44 15 chr13 58974012 58974080 -60770818 + (TA)n Simple_repeat Simple_repeat 2 71 0 1473 260 96 63 chr13 58974178 58974742 -60770156 + HAL1 LINE L1 1106 1705 -802 1363 250 43 3 chr13 58974742 58975070 -60769828 - MER58B DNA MER1_type 0 341 1 1473 260 96 63 chr13 58975070 58975283 -60769615 + HAL1 LINE L1 1705 1909 -598 200 182 45 0 chr13 58975411 58975455 -60769443 + A-rich Low_complexity Low_complexity 5 50 0 353 191 59 0 chr13 58975563 58975631 -60769267 - Tigger5 DNA MER2_type -5 2318 2247 * 424 203 0 13 chr13 58975626 58975705 -60769193 + Tigger5 DNA MER2_type 2242 2319 -4 340 182 15 15 chr13 58975706 58975772 -60769126 - Tigger5 DNA MER2_type -2245 78 13 384 256 64 30 chr13 58975799 58976002 -60768896 + HAL1 LINE L1 2036 2245 -262 301 257 29 9 chr13 58976014 58976119 -60768779 + HAL1 LINE L1 2290 2396 -111 693 303 73 38 chr13 58976428 58976771 -60768127 + L2 LINE L2 2941 3295 -18 313 309 264 0 chr13 58977544 58977722 -60767176 + L1ME4a LINE L1 5355 5579 -542 22 0 0 0 chr13 58977796 58977818 -60767080 + AT_rich Low_complexity Low_complexity 1 22 0 1683 175 3 18 chr13 58977878 58978188 -60766710 + AluJo SINE Alu 1 306 0 296 250 45 9 chr13 58978195 58978307 -60766591 + L1ME4a LINE L1 5765 5880 -241 539 304 98 10 chr13 58979333 58979527 -60765371 - MIR SINE MIR -16 246 36 2210 138 39 14 chr13 58979940 58980295 -60764603 - THE1B LTR MaLR 0 364 1 11577 100 4 2 chr13 58980295 58981872 -60763026 - THE1B-int LTR MaLR 0 1580 1 1408 143 45 22 chr13 58981874 58982097 -60762801 - THE1B LTR MaLR -12 352 125 4460 180 76 10 chr13 58984273 58985030 -60759868 + L1MA4 LINE L1 5101 5968 -332 267 54 0 0 chr13 58985030 58985067 -60759831 + (CA)n Simple_repeat Simple_repeat 2 38 0 4460 180 76 10 chr13 58985067 58985400 -60759498 + L1MA4 LINE L1 5968 6277 -23 979 272 87 54 chr13 58985914 58986454 -60758444 + MLT2E LTR ERVL 6 626 -2 2076 105 27 17 chr13 58986683 58986979 -60757919 + AluSx SINE Alu 2 300 -12 1342 223 69 25 chr13 58987480 58987843 -60757055 - MLT1B LTR MaLR -11 379 1 4802 182 14 1 chr13 58989517 58990498 -60754400 - L1PB4 LINE L1 -1 6155 5162 836 210 54 73 chr13 58990501 58990815 -60754083 + L1PB4 LINE L1 4852 5159 -987 797 280 60 27 chr13 58991550 58991848 -60753050 + L1MCa LINE L1 572 848 -5197 450 218 78 53 chr13 58991844 58992087 -60752811 + L1MCa LINE L1 1300 1548 -5016 * 940 297 16 16 chr13 58992100 58992535 -60752363 + L1M4 LINE L1 3197 3631 -2515 646 216 7 0 chr13 58992539 58992687 -60752211 + L1M4 LINE L1 4798 4946 -1200 9284 148 26 37 chr13 58992723 58993963 -60750935 - Tigger1 DNA MER2_type 0 2418 1202 1946 162 0 0 chr13 58993963 58994265 -60750633 + AluSq SINE Alu 1 302 -11 9284 148 26 37 chr13 58994265 58994736 -60750162 - Tigger1 DNA MER2_type -1216 1202 727 222 62 0 0 chr13 58994750 58994782 -60750116 + (TTA)n Simple_repeat Simple_repeat 3 34 0 17878 30 3 1 chr13 58994782 58997690 -60747208 - L1PA3 LINE L1 -18 6137 3226 4654 23 2 2 chr13 58997690 58998260 -60746638 + L1PA3 LINE L1 2649 3218 -2928 3066 159 25 0 chr13 58998272 58998800 -60746098 - Tigger1 DNA MER2_type -1693 725 185 4542 314 111 39 chr13 58999092 58999570 -60745328 - L2 LINE L2 -1 3312 2870 351 0 0 0 chr13 58999570 58999609 -60745289 + (TA)n Simple_repeat Simple_repeat 1 39 0 4542 314 111 39 chr13 58999609 59000640 -60744258 - L2 LINE L2 -443 2870 1915 2237 68 21 4 chr13 59000640 59000920 -60743978 - AluY SINE Alu -26 285 1 4542 314 111 39 chr13 59000920 59001153 -60743745 - L2 LINE L2 -1398 1915 1700 249 33 0 0 chr13 59001153 59001183 -60743715 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4542 314 111 39 chr13 59001183 59002488 -60742410 - L2 LINE L2 -1613 1700 36 28 48 0 0 chr13 59004132 59004174 -60740724 + AT_rich Low_complexity Low_complexity 1 42 0 234 233 178 14 chr13 59004637 59004710 -60740188 - MIR SINE MIR -10 252 168 363 263 88 15 chr13 59005256 59005393 -60739505 + MLT1J1 LTR MaLR 2 148 -298 2219 307 233 6 chr13 59005938 59007119 -60737779 - L2 LINE L2 -1341 1973 525 2727 146 20 2 chr13 59007120 59007579 -60737319 + L1P LINE L1 3856 4322 -1824 503 193 46 0 chr13 59007587 59007696 -60737202 - MLT1C LTR MaLR -353 114 1 588 201 97 8 chr13 59007739 59007873 -60737025 - MLT1C LTR MaLR -316 151 6 1555 112 0 0 chr13 59008065 59008279 -60736619 + AluSx SINE Alu 1 214 -98 2586 117 31 8 chr13 59008436 59008828 -60736070 + LTR9 LTR ERV1 212 612 0 5295 198 50 8 chr13 59008829 59010019 -60734879 + L1 LINE L1 3995 5235 -911 2632 178 22 20 chr13 59010211 59010712 -60734186 + MER67C LTR ERV1 1 502 -208 1394 143 0 0 chr13 59010780 59011010 -60733888 + L1P LINE L1 4212 4441 -1705 * 6034 113 2 0 chr13 59011007 59011881 -60733017 + L1P LINE L1 3893 4768 -1378 519 263 32 0 chr13 59011879 59012065 -60732833 - L1ME LINE L1 -715 5449 5258 * 1793 113 0 33 chr13 59012357 59012631 -60732267 - AluSq SINE Alu -48 265 1 230 194 28 28 chr13 59013167 59013239 -60731659 + (TA)n Simple_repeat Simple_repeat 1 72 0 550 319 112 28 chr13 59014153 59014918 -60729980 + HAL1 LINE L1 878 1707 -800 4552 138 11 15 chr13 59015244 59015997 -60728901 - L1PA15 LINE L1 -3 6162 5413 32 57 0 0 chr13 59016004 59016057 -60728841 + AT_rich Low_complexity Low_complexity 1 53 0 496 192 0 115 chr13 59016067 59016197 -60728701 + L2 LINE L2 3193 3307 -6 180 0 0 0 chr13 59017586 59017606 -60727292 + (A)n Simple_repeat Simple_repeat 1 20 0 245 87 0 22 chr13 59018962 59019008 -60725890 + (TA)n Simple_repeat Simple_repeat 1 45 0 25 75 0 0 chr13 59019023 59019076 -60725822 + AT_rich Low_complexity Low_complexity 1 53 0 255 333 122 8 chr13 59019488 59019611 -60725287 - MIR SINE MIR -115 147 11 261 0 0 0 chr13 59020149 59020178 -60724720 + (CAA)n Simple_repeat Simple_repeat 2 30 0 234 346 12 0 chr13 59021091 59021172 -60723726 + L2 LINE L2 3232 3313 0 1496 147 52 130 chr13 59021592 59021999 -60722899 + THE1C LTR MaLR 1 375 0 11084 113 1 1 chr13 59022000 59023578 -60721320 + THE1B-int LTR MaLR 2 1580 0 1994 135 39 33 chr13 59023578 59023940 -60720958 + THE1B LTR MaLR 1 364 0 201 235 39 0 chr13 59025847 59025898 -60719000 - L2 LINE L2 -5 3308 3256 33 25 0 0 chr13 59026524 59026564 -60718334 + AT_rich Low_complexity Low_complexity 1 40 0 738 233 70 51 chr13 59027298 59027513 -60717385 + MER20 DNA MER1_type 1 219 0 343 292 110 33 chr13 59027873 59028180 -60716718 - MLT1J2 LTR MaLR -23 420 94 215 386 94 0 chr13 59028290 59028417 -60716481 - L2 LINE L2 0 3272 3134 29 0 0 0 chr13 59028797 59028826 -60716072 + AT_rich Low_complexity Low_complexity 1 29 0 574 264 46 110 chr13 59029033 59029534 -60715364 + MLT1J LTR MaLR 42 510 -1 926 266 118 45 chr13 59029715 59029989 -60714909 - L1ME3A LINE L1 -12 6158 5905 1549 192 89 9 chr13 59029989 59030327 -60714571 + MLT1A1 LTR MaLR 1 365 0 926 266 118 45 chr13 59030327 59030647 -60714251 - L1ME3A LINE L1 -265 5905 5520 21 89 0 0 chr13 59030959 59031015 -60713883 + AT_rich Low_complexity Low_complexity 1 56 0 200 371 56 11 chr13 59031919 59032008 -60712890 - L2 LINE L2 -43 3229 3137 230 246 43 14 chr13 59032139 59032208 -60712690 + MIR SINE MIR 118 188 -74 423 353 32 11 chr13 59032280 59032470 -60712428 - MIR SINE MIR -26 236 43 6448 25 0 1 chr13 59035453 59036207 -60708691 - L1PA3 LINE L1 0 6155 5403 256 385 50 0 chr13 59036906 59037067 -60707831 - L2 LINE L2 -1885 1429 1261 277 315 60 27 chr13 59038083 59038232 -60706666 - MIR SINE MIR -73 189 36 220 317 24 37 chr13 59038414 59038496 -60706402 - MIR SINE MIR -131 131 51 180 328 17 17 chr13 59038774 59038832 -60706066 + L2 LINE L2 3201 3258 -14 242 324 159 6 chr13 59040007 59040177 -60704721 - MIR SINE MIR 0 262 67 915 276 147 54 chr13 59040649 59041087 -60703811 + L1MCa LINE L1 56 449 -5596 3837 88 24 0 chr13 59041563 59042098 -60702800 + MER41A LTR ERV1 1 548 -6 345 299 45 140 chr13 59043185 59043208 -60701690 + L2 LINE L2 2286 2310 -1004 3443 118 31 6 chr13 59043208 59043421 -60701477 - MER41C LTR ERV1 0 554 348 189 0 0 0 chr13 59043421 59043442 -60701456 + (TA)n Simple_repeat Simple_repeat 1 21 0 3443 118 31 6 chr13 59043442 59043768 -60701130 - MER41C LTR ERV1 -206 348 1 345 299 45 140 chr13 59043768 59044101 -60700797 + L2 LINE L2 2310 2570 -744 2089 127 3 0 chr13 59044101 59044409 -60700489 - AluSg SINE Alu -1 309 1 345 299 45 140 chr13 59044409 59044622 -60700276 + L2 LINE L2 2570 2802 -512 581 308 181 23 chr13 59044734 59045166 -60699732 + L2 LINE L2 2809 3308 -5 332 326 28 7 chr13 59046173 59046317 -60698581 - MER69 DNA AcHobo -2379 147 1 2178 112 0 3 chr13 59046571 59046866 -60698032 + AluSg SINE Alu 1 294 -16 4193 196 6 7 chr13 59046958 59047908 -60696990 - L1MA9 LINE L1 -14 6298 5254 230 162 0 0 chr13 59047906 59047943 -60696955 + L1 LINE L1 3952 3988 -2158 * 530 81 0 0 chr13 59047952 59048026 -60696872 + LTR9 LTR ERV1 1 74 -538 22 70 0 0 chr13 59048490 59048533 -60696365 + AT_rich Low_complexity Low_complexity 1 43 0 298 227 36 9 chr13 59049099 59049209 -60695689 + (TA)n Simple_repeat Simple_repeat 1 113 0 * 307 240 41 12 chr13 59049184 59049355 -60695543 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 * 350 202 45 34 chr13 59049320 59049498 -60695400 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 308 262 24 12 chr13 59049497 59049661 -60695237 + (TATAA)n Simple_repeat Simple_repeat 5 170 0 * 50 14 0 28 chr13 59049661 59049684 -60695214 + AT_rich Low_complexity Low_complexity 1 23 -47 1986 149 0 0 chr13 59049684 59049973 -60694925 - AluSx SINE Alu -23 289 1 50 14 0 28 chr13 59049973 59050021 -60694877 + AT_rich Low_complexity Low_complexity 23 70 0 268 229 18 11 chr13 59050021 59050301 -60694597 + (TA)n Simple_repeat Simple_repeat 1 282 0 1565 181 122 20 chr13 59050302 59050808 -60694090 - MLT2A2 LTR ERVL 0 554 1 244 294 8 17 chr13 59050808 59050927 -60693971 + (TA)n Simple_repeat Simple_repeat 2 119 0 27 49 0 0 chr13 59051271 59051312 -60693586 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr13 59052200 59052225 -60692673 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr13 59052689 59052712 -60692186 + AT_rich Low_complexity Low_complexity 1 23 0 229 338 79 44 chr13 59053494 59053722 -60691176 + MIR SINE MIR 27 262 0 2313 172 64 9 chr13 59054054 59054491 -60690407 + LOR1b LTR ERV1 1 461 0 2094 163 24 21 chr13 59054582 59054963 -60689935 - LTR8 LTR ERV1 0 691 310 1094 174 0 15 chr13 59055010 59055206 -60689692 - LTR8 LTR ERV1 -382 309 117 7577 27 0 0 chr13 59055224 59056172 -60688726 - L1PA4 LINE L1 -3 6152 5205 6996 20 0 1 chr13 59056172 59057005 -60687893 + L1PA4 LINE L1 4375 5206 -940 615 226 22 0 chr13 59057005 59057142 -60687756 - LTR8A LTR ERV1 -587 140 1 28 0 0 0 chr13 59057698 59057726 -60687172 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr13 59057750 59057785 -60687113 + AT_rich Low_complexity Low_complexity 1 35 0 203 204 19 0 chr13 59058841 59058895 -60686003 + (TA)n Simple_repeat Simple_repeat 2 56 0 691 225 0 0 chr13 59058991 59059120 -60685778 + MER94 DNA DNA 6 134 0 183 325 0 100 chr13 59060252 59060372 -60684526 + L2 LINE L2 3159 3266 -47 22 0 0 0 chr13 59060398 59060420 -60684478 + AT_rich Low_complexity Low_complexity 1 22 0 208 156 0 78 chr13 59062370 59062434 -60682464 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 204 158 0 0 chr13 59062487 59062525 -60682373 + (TA)n Simple_repeat Simple_repeat 2 39 0 312 295 26 0 chr13 59062559 59062715 -60682183 + (TA)n Simple_repeat Simple_repeat 2 161 0 22 0 0 0 chr13 59062739 59062761 -60682137 + AT_rich Low_complexity Low_complexity 1 22 0 415 314 25 38 chr13 59063613 59063772 -60681126 + MIR SINE MIR 1 157 -105 2796 299 71 16 chr13 59063915 59064882 -60680016 + L1MDa LINE L1 19 1038 -5502 303 186 14 0 chr13 59064881 59064951 -60679947 + L1MB3 LINE L1 6085 6155 -28 * 353 219 34 0 chr13 59064951 59065070 -60679828 + (TA)n Simple_repeat Simple_repeat 2 124 0 180 111 0 0 chr13 59065118 59065145 -60679753 + (TA)n Simple_repeat Simple_repeat 2 28 0 3003 220 137 22 chr13 59065277 59066396 -60678502 + L1MDa LINE L1 1025 2271 -4269 303 323 20 0 chr13 59066758 59066857 -60678041 + ERVL LTR ERVL 3644 3744 -2020 2208 113 3 0 chr13 59066860 59067170 -60677728 - AluSq SINE Alu 0 313 3 817 100 0 0 chr13 59067380 59067490 -60677408 - AluJb SINE Alu -179 133 24 371 138 35 0 chr13 59067543 59067601 -60677297 + AluJ/FLAM SINE Alu 14 73 -229 499 301 146 48 chr13 59067608 59068020 -60676878 + ERVL LTR ERVL 4010 4461 -1303 395 181 147 35 chr13 59069801 59069917 -60674981 + MER5B DNA MER1_type 15 143 -35 270 56 0 0 chr13 59069961 59069997 -60674901 + (CA)n Simple_repeat Simple_repeat 2 37 0 926 331 82 59 chr13 59070332 59071420 -60673478 + ERVL LTR ERVL 1622 2734 -3030 4830 136 66 51 chr13 59071423 59072726 -60672172 + pTR5 LTR ERV1 742 2355 -83 1981 94 38 7 chr13 59072726 59073014 -60671884 - AluY SINE Alu -14 297 1 4830 136 66 51 chr13 59073014 59073100 -60671798 + pTR5 LTR ERV1 2355 2438 0 271 332 116 42 chr13 59073231 59073541 -60671357 + ERVL LTR ERVL 2891 3223 -2541 295 351 43 22 chr13 59073702 59073887 -60671011 + ERVL LTR ERVL 4361 4549 -1215 2228 90 0 20 chr13 59074177 59074476 -60670422 - AluY SINE Alu -17 294 2 2680 141 95 8 chr13 59074522 59075005 -60669893 - L1PA16 LINE L1 -7 6159 5635 5109 187 36 10 chr13 59075185 59076720 -60668178 + L1MA8 LINE L1 4725 6288 -3 500 278 28 17 chr13 59077654 59077830 -60667068 - L1ME LINE L1 -381 5789 5612 480 234 170 32 chr13 59077929 59078155 -60666743 - MER31B LTR ERV1 -244 241 15 246 290 96 52 chr13 59078165 59078489 -60666409 - L1ME LINE L1 -579 5591 5254 495 137 14 0 chr13 59078535 59078608 -60666290 - MER2 DNA MER2_type -270 75 2 21 71 0 0 chr13 59079185 59079227 -60665671 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr13 59081961 59081989 -60662909 + AT_rich Low_complexity Low_complexity 1 28 0 817 213 6 6 chr13 59082429 59082593 -60662305 + FRAM SINE Alu 1 164 -12 312 322 49 7 chr13 59082857 59083000 -60661898 - MIR SINE MIR -14 248 100 23 0 0 0 chr13 59083565 59083588 -60661310 + AT_rich Low_complexity Low_complexity 1 23 0 526 281 152 0 chr13 59084640 59084804 -60660094 - MIR3 SINE MIR -1 207 19 2358 98 0 0 chr13 59085068 59085373 -60659525 + AluSx SINE Alu 1 305 -7 309 282 10 19 chr13 59086077 59086180 -60658718 - L1ME LINE L1 -1550 4596 4495 351 239 0 0 chr13 59086209 59086297 -60658601 + (TA)n Simple_repeat Simple_repeat 1 88 0 691 250 22 9 chr13 59086297 59086521 -60658377 - L1ME LINE L1 -1704 4442 4216 22 35 0 0 chr13 59086683 59086712 -60658186 + AT_rich Low_complexity Low_complexity 1 29 0 318 50 0 0 chr13 59087041 59087081 -60657817 + (CA)n Simple_repeat Simple_repeat 2 41 0 180 0 0 0 chr13 59087082 59087102 -60657796 + (GA)n Simple_repeat Simple_repeat 1 20 0 600 340 68 0 chr13 59087336 59087571 -60657327 + MIR SINE MIR 8 258 -4 458 264 138 13 chr13 59088073 59088232 -60656666 - MER5A DNA MER1_type 0 189 11 21 0 0 0 chr13 59088938 59088959 -60655939 + AT_rich Low_complexity Low_complexity 1 21 0 2463 216 49 13 chr13 59089093 59089705 -60655193 - L1MD3 LINE L1 -9 7986 7353 321 136 25 25 chr13 59089803 59089884 -60655014 + CT-rich Low_complexity Low_complexity 4 84 0 321 296 32 17 chr13 59090200 59090382 -60654516 - L1MCc LINE L1 -5889 533 8 378 91 0 0 chr13 59091448 59091503 -60653395 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr13 59092573 59092594 -60652304 + AT_rich Low_complexity Low_complexity 1 21 0 2134 76 44 0 chr13 59094450 59094725 -60650173 + AluY SINE Alu 1 287 -24 1483 205 90 116 chr13 59094893 59095578 -60649320 + LTR28 LTR ERV1 105 966 -54 460 236 8 55 chr13 59095633 59095760 -60649138 + LTR28 LTR ERV1 900 1020 0 1461 215 0 27 chr13 59097121 59097419 -60647479 + AluJb SINE Alu 6 295 -17 27 29 0 0 chr13 59097789 59097823 -60647075 + AT_rich Low_complexity Low_complexity 1 34 0 227 230 8 79 chr13 59098395 59098521 -60646377 + L1M4 LINE L1 5127 5243 -903 633 239 0 22 chr13 59098529 59098682 -60646216 + FLAM_A SINE Alu 1 133 0 374 113 0 14 chr13 59098705 59098776 -60646122 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 1539 164 6 61 chr13 59099423 59099735 -60645163 + AluJb SINE Alu 7 301 -11 29 75 0 21 chr13 59099858 59099929 -60644969 + AT_rich Low_complexity Low_complexity 1 71 -20 1888 201 45 2 chr13 59099929 59100332 -60644566 - L1MA6 LINE L1 0 6300 5881 29 75 0 21 chr13 59100332 59100353 -60644545 + AT_rich Low_complexity Low_complexity 71 91 0 190 343 108 20 chr13 59101290 59101392 -60643506 - L2 LINE L2 -199 3073 2963 2087 123 19 13 chr13 59104343 59104653 -60640245 + AluSx SINE Alu 1 312 0 233 380 0 0 chr13 59104911 59104982 -60639916 - L3 LINE CR1 -477 1100 1030 296 329 113 9 chr13 59104998 59105046 -60639852 - MIR SINE MIR -15 247 205 577 281 108 16 chr13 59105046 59105352 -60639546 + MER46C DNA MER2_type 5 338 0 296 329 113 9 chr13 59105352 59105398 -60639500 - MIR SINE MIR -57 205 165 2286 111 13 49 chr13 59105398 59105785 -60639113 - THE1C LTR MaLR -2 373 1 296 329 113 9 chr13 59105785 59105902 -60638996 - MIR SINE MIR -97 165 13 2080 52 8 0 chr13 59106178 59106445 -60638453 - L1PA7 LINE L1 0 6154 5886 230 336 26 35 chr13 59107167 59107283 -60637615 - L2 LINE L2 0 3313 3199 540 256 0 28 chr13 59107602 59107778 -60637120 - L1MEc LINE L1 -3647 2568 2398 3914 220 21 21 chr13 59107794 59111704 -60633194 - L1PB4 LINE L1 -3 7591 3487 703 310 57 63 chr13 59111736 59112262 -60632636 - L1PB4 LINE L1 -6421 1164 11 1263 282 101 42 chr13 59112278 59113791 -60631107 - L1MEc LINE L1 -3965 2431 829 33 0 0 0 chr13 59113924 59113957 -60630941 + AT_rich Low_complexity Low_complexity 1 33 0 336 270 157 22 chr13 59114335 59114520 -60630378 - L1MEc LINE L1 -5859 346 137 25 31 0 0 chr13 59114814 59114846 -60630052 + AT_rich Low_complexity Low_complexity 1 32 0 219 263 0 0 chr13 59116023 59116080 -60628818 + T-rich Low_complexity Low_complexity 1 57 0 2146 108 0 3 chr13 59116902 59117198 -60627700 - AluSg SINE Alu -15 295 1 30 93 0 0 chr13 59117339 59117425 -60627473 + AT_rich Low_complexity Low_complexity 1 86 0 253 368 63 0 chr13 59117462 59117557 -60627341 + L2 LINE L2 2897 2997 -316 1790 229 11 42 chr13 59117894 59118371 -60626527 + MLT1D LTR MaLR 42 503 -2 615 263 108 80 chr13 59118481 59119008 -60625890 - L1ME LINE L1 -351 5811 5268 326 261 171 25 chr13 59119020 59119219 -60625679 - L1ME LINE L1 -913 5233 5006 733 245 68 32 chr13 59119269 59119518 -60625380 - L1MA4 LINE L1 -6 6294 6037 406 269 178 11 chr13 59119686 59119950 -60624948 - L1ME LINE L1 -1346 4800 4493 354 284 81 56 chr13 59120379 59120664 -60624234 + MLT1I LTR MaLR 116 407 -2 576 113 0 0 chr13 59121125 59121205 -60623693 + MADE1 DNA Mariner 1 80 0 297 0 0 0 chr13 59122511 59122544 -60622354 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 1418 172 44 7 chr13 59122560 59122724 -60622174 - AluSx SINE Alu -3 309 128 1009 13 57 6 chr13 59122724 59122882 -60622016 + (TTTTA)n Simple_repeat Simple_repeat 2 167 0 1418 172 44 7 chr13 59122882 59123013 -60621885 - AluSx SINE Alu -184 128 3 463 291 96 59 chr13 59123091 59123579 -60621319 + L1ME LINE L1 5317 5822 -348 678 162 0 0 chr13 59123685 59123790 -60621108 - Tigger1 DNA MER2_type -1 2417 2313 4086 177 20 8 chr13 59123822 59124706 -60620192 - L1MC1 LINE L1 -293 6040 5149 431 296 9 0 chr13 59225145 59225260 -60519638 - MER94 DNA DNA -3 131 16 1770 155 3 23 chr13 59225480 59225789 -60519109 - AluJb SINE Alu -9 303 1 28 86 0 0 chr13 59226300 59226370 -60518528 + AT_rich Low_complexity Low_complexity 1 70 0 206 278 37 0 chr13 59226480 59226534 -60518364 - L2 LINE L2 0 3313 3258 250 362 0 11 chr13 59226685 59226779 -60518119 - MIR SINE MIR -121 141 49 1167 124 30 5 chr13 59226810 59227011 -60517887 - L1PB2 LINE L1 -2 6149 5944 2697 137 14 12 chr13 59227752 59228182 -60516716 - MSTB1 LTR MaLR -1 431 1 229 300 11 11 chr13 59229689 59229779 -60515119 + HAL1 LINE L1 1585 1674 -833 1365 134 38 8 chr13 59230107 59230346 -60514552 + L1PA16 LINE L1 5912 6157 -9 1812 159 0 24 chr13 59230381 59230677 -60514221 + AluJb SINE Alu 3 291 -21 31 92 0 0 chr13 59231481 59231568 -60513330 + AT_rich Low_complexity Low_complexity 1 87 0 240 239 0 28 chr13 59231672 59231781 -60513117 + GA-rich Low_complexity Low_complexity 3 108 0 384 189 21 0 chr13 59231889 59231984 -60512914 + GA-rich Low_complexity Low_complexity 3 99 0 383 348 93 34 chr13 59232503 59232891 -60512007 + L1 LINE L1 3574 3984 -2162 1168 298 70 0 chr13 59233114 59233486 -60511412 + LTR16A LTR ERVL 53 450 0 308 287 11 23 chr13 59233625 59233712 -60511186 + MIR3 SINE MIR 113 198 -10 365 358 55 79 chr13 59233909 59234163 -60510735 - L2 LINE L2 0 3272 3025 396 301 0 8 chr13 59234502 59234635 -60510263 - MER94 DNA DNA -2 132 1 214 353 136 15 chr13 59234805 59235077 -60509821 - L2 LINE L2 -553 2761 2457 433 214 237 23 chr13 59235401 59235663 -60509235 - MER69 DNA AcHobo -7 2519 2202 698 186 50 111 chr13 59235677 59235876 -60509022 - MER20 DNA MER1_type -5 214 28 1325 223 28 28 chr13 59235897 59235922 -60508976 - MER69 DNA AcHobo -317 2209 2185 1548 194 26 59 chr13 59235922 59236143 -60508755 - MLT1A2 LTR MaLR 0 374 170 2202 118 3 0 chr13 59236143 59236439 -60508459 - AluSx SINE Alu -13 299 3 1548 194 26 59 chr13 59236439 59236604 -60508294 - MLT1A2 LTR MaLR -204 170 1 1325 223 28 28 chr13 59236604 59236941 -60507957 - MER69 DNA AcHobo -340 2186 1847 1009 237 22 9 chr13 59237322 59237546 -60507352 - LTR16B LTR ERVL 0 464 238 1005 230 44 54 chr13 59237760 59238077 -60506821 - MER69 DNA AcHobo -865 361 48 2293 119 6 8 chr13 59238085 59238445 -60506453 + MER6 DNA MER2_type 507 865 0 25 0 0 0 chr13 59239665 59239690 -60505208 + AT_rich Low_complexity Low_complexity 1 25 0 1039 277 160 34 chr13 59239751 59240657 -60504241 - L2 LINE L2 0 3313 2302 182 309 0 36 chr13 59240847 59240902 -60503996 + MIR3 SINE MIR 108 160 -48 214 377 55 7 chr13 59241152 59241298 -60503600 + MIR SINE MIR 53 205 -57 403 266 140 21 chr13 59241547 59241690 -60503208 - MIR SINE MIR -21 241 82 443 318 116 30 chr13 59241981 59242509 -60502389 + L2 LINE L2 2357 2929 -385 299 322 52 35 chr13 59242776 59242891 -60502007 + L2 LINE L2 3139 3255 -17 315 206 6 119 chr13 59243370 59243480 -60501418 - MLT1I LTR MaLR -255 167 106 1587 136 92 28 chr13 59243480 59243797 -60501101 - MER1B DNA MER1_type 0 337 1 315 206 6 119 chr13 59243797 59243848 -60501050 - MLT1I LTR MaLR -316 106 51 293 205 0 26 chr13 59244747 59244825 -60500073 + GA-rich Low_complexity Low_complexity 4 79 0 312 194 161 77 chr13 59244891 59245139 -60499759 - HAL1b LINE L1 -310 1038 770 574 295 29 9 chr13 59245140 59245350 -60499548 + L2 LINE L2 2844 3057 -256 401 150 50 30 chr13 59245982 59246082 -60498816 + L1MA4A LINE L1 6197 6298 -5 2497 40 20 16 chr13 59246268 59246571 -60498327 - AluY SINE Alu -7 304 1 21 0 0 0 chr13 59246609 59246630 -60498268 + AT_rich Low_complexity Low_complexity 1 21 0 2068 157 3 3 chr13 59246999 59247351 -60497547 - L1MA4A LINE L1 -121 6182 5832 203 182 23 0 chr13 59248693 59248737 -60496161 + (TG)n Simple_repeat Simple_repeat 2 46 0 435 52 0 0 chr13 59251050 59251108 -60493790 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 961 229 93 95 chr13 59251598 59252073 -60492825 + MLT1J LTR MaLR 4 477 -34 180 0 0 0 chr13 59252420 59252440 -60492458 + (A)n Simple_repeat Simple_repeat 1 20 0 23 33 0 0 chr13 59252798 59252828 -60492070 + AT_rich Low_complexity Low_complexity 1 30 0 212 0 36 0 chr13 59253039 59253067 -60491831 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 904 171 5 57 chr13 59253195 59253346 -60491552 - MER96B DNA MER1_type? -183 234 96 1942 119 0 52 chr13 59253346 59253656 -60491242 + AluSg SINE Alu 1 294 -16 904 171 5 57 chr13 59253656 59253715 -60491183 - MER96B DNA MER1_type? -321 96 35 220 190 138 0 chr13 59255069 59255127 -60489771 + L3b LINE CR1 1322 1387 -196 3606 276 117 42 chr13 59256246 59257593 -60487305 - L2 LINE L2 0 3313 2068 2269 91 47 0 chr13 59257593 59257890 -60487008 + AluSx SINE Alu 1 311 -1 3606 276 117 42 chr13 59257890 59258875 -60486023 - L2 LINE L2 -1245 2068 780 583 299 45 45 chr13 59258902 59259123 -60485775 - L2 LINE L2 -3092 222 2 562 125 0 0 chr13 59259651 59259747 -60485151 - MER53 DNA DNA 0 189 94 2633 55 0 3 chr13 59259856 59260167 -60484731 + AluY SINE Alu 1 310 -1 1348 192 124 112 chr13 59263596 59264397 -60480501 - LTR1B LTR ERV1 -4 822 13 1861 130 0 4 chr13 59264688 59264950 -60479948 + AluSx SINE Alu 7 267 -45 322 329 70 6 chr13 59265007 59265165 -60479733 - MIR3 SINE MIR 0 208 41 2346 101 7 0 chr13 59265634 59265940 -60478958 + AluSp SINE Alu 1 308 -5 313 333 93 54 chr13 59266499 59266853 -60478045 + L2 LINE L2 2425 2792 -522 313 261 7 7 chr13 59267498 59267636 -60477262 + GA-rich Low_complexity Low_complexity 2 139 0 342 321 149 20 chr13 59269004 59269306 -60475592 - L2 LINE L2 -470 2844 2504 1327 226 117 32 chr13 59270635 59271078 -60473820 + MLT1D LTR MaLR 25 505 0 975 206 200 31 chr13 59273342 59273542 -60471356 - LTR50 LTR ERVL -1 794 629 1090 132 65 115 chr13 59273542 59273882 -60471016 + MER33 DNA MER1_type 1 323 -1 975 206 200 31 chr13 59273882 59274275 -60470623 - LTR50 LTR ERVL -166 629 9 529 261 123 43 chr13 59274278 59274489 -60470409 - L2 LINE L2 -8 3305 3078 1146 298 157 8 chr13 59275265 59275787 -60469111 - L2 LINE L2 -208 3105 2513 842 299 124 43 chr13 59276658 59276922 -60467976 - L2 LINE L2 -1442 1872 1631 369 109 0 0 chr13 59276922 59276977 -60467921 + (TG)n Simple_repeat Simple_repeat 2 56 0 842 299 124 43 chr13 59276977 59277335 -60467563 - L2 LINE L2 -1683 1631 1200 1047 107 6 0 chr13 59277448 59277617 -60467281 - L1PA8 LINE L1 -121 6051 5882 353 281 97 39 chr13 59277643 59278151 -60466747 + L1ME4a LINE L1 5574 6110 -11 406 320 213 42 chr13 59278955 59280047 -60464851 + L2 LINE L2 1700 2977 -337 216 0 0 0 chr13 59280252 59280276 -60464622 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 256 344 35 105 chr13 59280286 59280716 -60464182 - L2 LINE L2 -50 3222 2823 3571 116 11 9 chr13 59280965 59281516 -60463382 - L1PA13 LINE L1 -6 6157 5606 204 298 59 12 chr13 59281640 59281748 -60463150 + MIR SINE MIR 35 152 -69 263 272 204 10 chr13 59283157 59283260 -60461638 - MIR SINE MIR -58 150 28 278 283 81 20 chr13 59283941 59284040 -60460858 + MIR SINE MIR 145 249 -13 1472 195 73 114 chr13 59284105 59284747 -60460151 + L1MD2 LINE L1 5735 6350 -9 2163 51 0 0 chr13 59285322 59285577 -60459321 + AluY SINE Alu 1 255 -56 682 193 234 11 chr13 59286043 59286308 -60458590 - MER5C DNA MER1_type 0 324 1 2267 100 0 0 chr13 59287959 59288250 -60456648 - AluSx SINE Alu -21 291 1 30 0 0 0 chr13 59288253 59288283 -60456615 + AT_rich Low_complexity Low_complexity 1 30 0 3472 128 15 34 chr13 59288289 59288754 -60456144 - L1MA5 LINE L1 -3 6297 5825 1995 112 13 48 chr13 59288754 59289067 -60455831 - AluSq SINE Alu -11 302 1 3472 128 15 34 chr13 59289067 59289116 -60455782 - L1MA5 LINE L1 -475 5825 5777 234 62 0 0 chr13 59289116 59289148 -60455750 + (TA)n Simple_repeat Simple_repeat 2 33 0 696 182 91 45 chr13 59289154 59289336 -60455562 - FRAM SINE Alu 0 166 5 3472 128 15 34 chr13 59289336 59289468 -60455430 - L1MA5 LINE L1 -528 5772 5655 204 158 0 0 chr13 59290073 59290111 -60454787 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 491 176 46 30 chr13 59290463 59290594 -60454304 + L1MA8 LINE L1 6058 6190 -101 539 114 57 0 chr13 59290648 59290753 -60454145 + L1MA8 LINE L1 6181 6291 0 1677 173 32 0 chr13 59290767 59291045 -60453853 + AluJb SINE Alu 1 287 -25 609 270 139 9 chr13 59291164 59291394 -60453504 + MIR SINE MIR 3 262 0 221 394 56 19 chr13 59291974 59292190 -60452708 + L3 LINE CR1 190 413 -1164 257 301 90 66 chr13 59293863 59294029 -60450869 - MER5A DNA MER1_type 0 189 20 262 287 53 11 chr13 59294823 59294917 -60449981 + MER93a LTR ERV1 5 102 -300 706 155 39 136 chr13 59294922 59295111 -60449787 - L1MA8 LINE L1 0 6291 6132 2050 116 3 10 chr13 59295111 59295405 -60449493 + AluSx SINE Alu 1 292 -20 706 155 39 136 chr13 59295405 59295473 -60449425 - L1MA8 LINE L1 -159 6132 6059 1601 151 20 7 chr13 59295550 59295855 -60449043 - L1MA8 LINE L1 -244 6047 5739 2732 128 31 8 chr13 59295955 59296542 -60448356 - L1MA8 LINE L1 -544 5747 5152 589 290 14 39 chr13 59296548 59296827 -60448071 + MER93a LTR ERV1 131 402 0 262 258 16 0 chr13 59297742 59297804 -60447094 + MIR3 SINE MIR 139 201 -7 22 35 0 0 chr13 59298876 59298905 -60445993 + AT_rich Low_complexity Low_complexity 1 29 0 261 359 84 21 chr13 59300074 59300216 -60444682 + L2 LINE L2 3122 3272 0 25 31 0 0 chr13 59300259 59300291 -60444607 + AT_rich Low_complexity Low_complexity 1 32 0 243 262 24 48 chr13 59300475 59300559 -60444339 + MIR SINE MIR 111 192 -70 180 338 56 0 chr13 59300971 59301042 -60443856 - L2 LINE L2 -469 2845 2771 561 170 9 0 chr13 59301517 59301623 -60443275 + MLT2B1 LTR ERVL 414 520 0 21 0 0 0 chr13 59301952 59301973 -60442925 + AT_rich Low_complexity Low_complexity 1 21 0 1825 163 0 13 chr13 59302063 59302363 -60442535 - AluSx SINE Alu -16 296 1 2017 107 45 63 chr13 59302758 59303140 -60441758 - THE1C LTR MaLR 0 375 1 1307 189 21 104 chr13 59303625 59304001 -60440897 + MLT1A1 LTR MaLR 21 365 0 1331 277 68 34 chr13 59304008 59304535 -60440363 - MLT1H LTR MaLR -2 547 3 987 270 93 59 chr13 59305882 59306375 -60438523 - MLT1H LTR MaLR 0 549 40 1508 221 36 36 chr13 59307166 59307609 -60437289 + MLT1C LTR MaLR 1 443 -24 1247 224 156 32 chr13 59307639 59308109 -60436789 - MER34 LTR ERV1 0 542 24 360 0 0 0 chr13 59309105 59309145 -60435753 + (CA)n Simple_repeat Simple_repeat 2 41 0 395 298 216 18 chr13 59309170 59309388 -60435510 + MIR SINE MIR 1 261 -1 27 0 0 0 chr13 59310003 59310030 -60434868 + AT_rich Low_complexity Low_complexity 1 27 0 2121 119 0 3 chr13 59310133 59310418 -60434480 - AluSc SINE Alu -25 284 1 401 318 101 0 chr13 59310792 59310981 -60433917 + MLT1I LTR MaLR 11 218 -191 561 303 29 19 chr13 59311441 59311649 -60433249 + MLT1I LTR MaLR 198 407 -2 23 33 0 0 chr13 59311810 59311840 -60433058 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr13 59312114 59312156 -60432742 + AT_rich Low_complexity Low_complexity 1 42 0 225 242 48 0 chr13 59312378 59312440 -60432458 - L2 LINE L2 -213 3059 2995 335 87 0 0 chr13 59312513 59312559 -60432339 + MADE1 DNA Mariner 34 79 -1 303 127 0 0 chr13 59313830 59313893 -60431005 + (A)n Simple_repeat Simple_repeat 1 63 0 210 258 96 39 chr13 59313905 59314050 -60430848 + MIR SINE MIR 37 189 -73 1951 130 3 17 chr13 59314063 59314423 -60430475 + AluSx SINE Alu 1 356 0 188 117 0 67 chr13 59318403 59318435 -60426463 + (A)n Simple_repeat Simple_repeat 1 29 -27 1972 62 0 0 chr13 59318435 59318676 -60426222 + AluY SINE Alu 1 241 -70 188 117 0 67 chr13 59318676 59318703 -60426195 + (A)n Simple_repeat Simple_repeat 29 56 0 244 246 18 0 chr13 59320296 59320353 -60424545 - L2 LINE L2 -4 3268 3211 2532 83 3 0 chr13 59320572 59320920 -60423978 + L1PA13 LINE L1 5814 6162 -1 3011 149 19 2 chr13 59320920 59321445 -60423453 + L1 LINE L1 4406 4939 -1207 25 31 0 0 chr13 59322423 59322455 -60422443 + AT_rich Low_complexity Low_complexity 1 32 0 527 209 31 118 chr13 59322807 59323061 -60421837 - L1MC4 LINE L1 -1 8041 7810 605 220 254 48 chr13 59323140 59323408 -60421490 - MER5C DNA MER1_type 0 324 2 1824 274 71 40 chr13 59323484 59324382 -60420516 - L1MC4 LINE L1 -408 7634 6644 1424 267 31 29 chr13 59325419 59326013 -60418885 + L1MD2 LINE L1 4 484 -5561 2934 239 101 14 chr13 59326066 59327065 -60417833 + L1MD2 LINE L1 3536 4621 -1943 2007 214 47 26 chr13 59327065 59327824 -60417074 - L1ME LINE L1 -539 5627 4853 4035 208 24 8 chr13 59328220 59329084 -60415814 + L1MD2 LINE L1 5870 6747 -30 180 309 0 18 chr13 59329198 59329253 -60415645 + MIR SINE MIR 196 249 -13 629 263 90 64 chr13 59329312 59329669 -60415229 + L2 LINE L2 2936 3301 -12 1846 160 39 21 chr13 59330779 59331110 -60413788 + MER1B DNA MER1_type 1 337 0 2972 198 30 27 chr13 59331198 59331859 -60413039 - LTR8A LTR ERV1 0 727 65 * 3087 198 65 12 chr13 59331854 59332546 -60412352 - MER50 LTR ERV1 -5 729 1 503 123 0 12 chr13 59332546 59332625 -60412273 - LTR8A LTR ERV1 -649 78 1 621 242 31 31 chr13 59333091 59333252 -60411646 + MER45A DNA AcHobo 18 178 0 2756 7 0 0 chr13 59333385 59333686 -60411212 + AluYa5 SINE Alu 1 301 -10 2122 121 0 3 chr13 59333772 59334062 -60410836 + AluSx SINE Alu 1 289 -23 370 339 71 52 chr13 59334198 59334898 -60410000 + HAL1b LINE L1 517 1125 -641 2770 155 54 29 chr13 59335273 59335904 -60408994 + LTR48B LTR ERV1 1 704 -3 301 295 48 17 chr13 59336666 59336893 -60408005 + L1M4 LINE L1 3804 4047 -2099 2229 121 3 0 chr13 59337446 59337752 -60407146 + AluSq SINE Alu 2 308 -5 3725 150 16 0 chr13 59337808 59338422 -60406476 + MER41B LTR ERV1 4 627 -8 1736 154 7 4 chr13 59338616 59338895 -60406003 + AluJb SINE Alu 1 280 -32 26 30 0 0 chr13 59339046 59339079 -60405819 + AT_rich Low_complexity Low_complexity 1 33 0 278 299 47 0 chr13 59339822 59339949 -60404949 + L1ME LINE L1 5734 5866 -255 2962 97 41 47 chr13 59340066 59340686 -60404212 - MER4B LTR ERV1 0 779 15 2050 131 26 7 chr13 59340686 59340992 -60403906 - AluSx SINE Alu 0 312 1 2962 97 41 47 chr13 59340992 59341007 -60403891 - MER4B LTR ERV1 -764 15 1 1506 184 41 4 chr13 59341835 59342102 -60402796 + AluJb SINE Alu 3 279 -33 446 198 103 0 chr13 59342207 59342323 -60402575 + L1MC4 LINE L1 6922 7049 -993 1221 252 170 28 chr13 59342364 59342939 -60401959 + L1MC4 LINE L1 7242 7898 -144 1360 132 0 10 chr13 59343071 59343276 -60401622 + AluSx SINE Alu 5 207 -105 234 0 0 0 chr13 59344174 59344200 -60400698 + (A)n Simple_repeat Simple_repeat 1 26 0 443 269 101 71 chr13 59344929 59345332 -60399566 + MLT1K LTR MaLR 146 588 0 408 40 0 0 chr13 59345368 59345418 -60399480 + (TG)n Simple_repeat Simple_repeat 1 50 0 219 36 0 0 chr13 59345417 59345445 -60399453 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2026 109 0 4 chr13 59345446 59345721 -60399177 - AluSc SINE Alu -35 274 1 849 202 44 20 chr13 59345721 59345924 -60398974 + MER21B LTR ERV1 641 848 -15 383 318 60 7 chr13 59346044 59346195 -60398703 - MIR SINE MIR -72 190 32 180 352 39 16 chr13 59346689 59346817 -60398081 - L2 LINE L2 -5 3267 3137 344 256 186 26 chr13 59347117 59347273 -60397625 + MER5A DNA MER1_type 9 189 0 386 117 17 0 chr13 59347438 59347498 -60397400 + U7 snRNA snRNA 1 61 -2 189 178 0 0 chr13 59348431 59348476 -60396422 + (TG)n Simple_repeat Simple_repeat 2 46 0 229 323 134 55 chr13 59349096 59349313 -60395585 - L2 LINE L2 -2 3270 3037 1071 231 49 0 chr13 59349652 59349877 -60395021 + MIR SINE MIR 23 258 -4 2755 109 14 32 chr13 59350051 59350510 -60394388 + MLT2A1 LTR ERVL 3 443 -10 925 176 1 6 chr13 59350753 59351559 -60393339 - BSR/Beta Satellite Satellite 0 802 1 * 1399 122 0 4 chr13 59351554 59351783 -60393115 + LSAU Satellite Satellite 1 228 -270 2483 81 7 0 chr13 59352129 59352437 -60392461 + AluSg SINE Alu 1 310 0 386 70 0 35 chr13 59352525 59352582 -60392316 - HAL1 LINE L1 -10 2497 2443 245 167 0 67 chr13 59352599 59352659 -60392239 - L1PA16 LINE L1 -23 6143 6088 * 11045 200 60 13 chr13 59352653 59357197 -60387701 + L1PB1 LINE L1 6 5189 -1678 333 0 0 0 chr13 59357197 59357234 -60387664 + (CA)n Simple_repeat Simple_repeat 2 38 0 11045 200 60 13 chr13 59357234 59358997 -60385901 + L1PB1 LINE L1 5189 6867 0 4755 131 11 5 chr13 59359025 59359817 -60385081 - L1PA16 LINE L1 -55 6111 5315 575 264 98 39 chr13 59359832 59360115 -60384783 - HAL1 LINE L1 -111 2396 2074 2438 64 0 16 chr13 59360115 59360429 -60384469 - AluY SINE Alu -2 309 1 575 264 98 39 chr13 59360429 59360604 -60384294 - HAL1 LINE L1 -433 2074 1911 12628 190 49 81 chr13 59360635 59360882 -60384016 - L1MA6 LINE L1 -2 7319 7066 2193 139 0 0 chr13 59360882 59361191 -60383707 + AluSx SINE Alu 1 309 -3 12628 190 49 81 chr13 59361191 59362548 -60382350 - L1MA6 LINE L1 -255 7066 5667 1903 113 0 4 chr13 59362548 59362796 -60382102 + AluSx SINE Alu 61 307 -5 12628 190 49 81 chr13 59362796 59365125 -60379773 - L1MA6 LINE L1 -1654 5667 3264 1942 180 0 0 chr13 59365125 59365425 -60379473 - AluJb SINE Alu -12 300 1 12628 190 49 81 chr13 59365425 59366713 -60378185 - L1MA6 LINE L1 -4057 3264 1936 2372 90 3 3 chr13 59366713 59367023 -60377875 + AluY SINE Alu 1 310 -1 12628 190 49 81 chr13 59367023 59369332 -60375566 - L1MA6 LINE L1 -5385 1936 4 2303 88 0 0 chr13 59369482 59369778 -60375120 - AluY SINE Alu -15 296 1 436 284 196 0 chr13 59369847 59370097 -60374801 - HAL1 LINE L1 -736 1771 1473 901 219 10 5 chr13 59370103 59370295 -60374603 + MER58A DNA MER1_type 1 193 -31 253 224 219 45 chr13 59370350 59370551 -60374347 - HAL1 LINE L1 -1044 1463 1228 1087 261 96 30 chr13 59370705 59371238 -60373660 - HAL1 LINE L1 -1478 1029 462 240 224 40 13 chr13 59371788 59371864 -60373034 - HAL1 LINE L1 -2131 376 299 444 230 146 38 chr13 59371869 59372082 -60372816 - HAL1 LINE L1 -2251 256 21 429 311 186 29 chr13 59372129 59372473 -60372425 + L2 LINE L2 2811 3208 -105 217 186 23 0 chr13 59372750 59372793 -60372105 + T-rich Low_complexity Low_complexity 3 46 0 547 130 9 9 chr13 59372793 59372908 -60371990 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 26 30 0 0 chr13 59373372 59373405 -60371493 + AT_rich Low_complexity Low_complexity 1 33 0 255 266 190 0 chr13 59373651 59373730 -60371168 + MIR3 SINE MIR 105 198 -10 193 208 42 21 chr13 59374593 59374641 -60370257 + L2 LINE L2 3216 3264 -8 1912 155 39 3 chr13 59374943 59375278 -60369620 + MER7A DNA MER2_type 2 346 0 543 244 128 6 chr13 59375740 59375920 -60368978 + MIR SINE MIR 49 250 -12 9516 158 45 11 chr13 59377292 59379821 -60365077 + L1M1 LINE L1 11 2681 -4884 2486 86 0 0 chr13 59379821 59380124 -60364774 + AluSc SINE Alu 1 303 -6 9516 158 45 11 chr13 59380124 59380142 -60364756 + L1M1 LINE L1 2681 2697 -4868 2337 115 20 20 chr13 59380142 59380532 -60364366 + L1MA2 LINE L1 5915 6304 0 207 356 22 0 chr13 59380858 59380948 -60363950 - MIR SINE MIR -111 151 60 1647 174 53 3 chr13 59381105 59381387 -60363511 + AluSx SINE Alu 4 299 -13 193 215 13 13 chr13 59382253 59382332 -60362566 + GA-rich Low_complexity Low_complexity 5 83 0 449 262 6 92 chr13 59384974 59385138 -60359760 - MER5B DNA MER1_type 0 178 29 238 315 72 18 chr13 59385264 59385375 -60359523 - L2 LINE L2 0 3313 3197 1511 167 117 0 chr13 59385518 59385782 -60359116 - AluJb SINE Alu -17 295 1 265 280 75 19 chr13 59385826 59385933 -60358965 + MLT1H LTR MaLR 50 162 -387 245 201 42 146 chr13 59386106 59386250 -60358648 + MLT1H LTR MaLR 421 549 0 294 313 24 0 chr13 59386301 59386384 -60358514 + L2 LINE L2 3184 3268 -4 187 433 37 15 chr13 59386350 59386484 -60358414 - L2 LINE L2 -50 3222 3086 * 335 224 119 45 chr13 59387362 59387496 -60357402 - HAL1 LINE L1 -2363 144 1 419 300 34 9 chr13 59387503 59387736 -60357162 + L1ME4a LINE L1 5710 5948 -173 192 422 0 0 chr13 59388799 59388889 -60356009 - L2 LINE L2 -397 2916 2827 336 295 85 39 chr13 59389324 59389453 -60355445 + L2 LINE L2 3134 3268 -4 1590 251 36 9 chr13 59389453 59389920 -60354978 + L1MC4 LINE L1 6830 7309 -733 634 242 107 46 chr13 59390010 59390337 -60354561 + L1MC4 LINE L1 7692 8038 -4 2310 100 3 0 chr13 59390601 59390902 -60353996 + AluSc SINE Alu 1 302 -7 1998 129 5 58 chr13 59390993 59391172 -60353726 + MER46B DNA MER2_type 2 189 -2542 914 128 0 0 chr13 59391172 59391305 -60353593 + FLAM_C SINE Alu 1 133 0 1998 129 5 58 chr13 59391305 59391316 -60353582 + MER46B DNA MER2_type 189 199 -2532 2302 100 0 29 chr13 59391316 59391626 -60353272 + AluSg SINE Alu 2 302 -8 1998 129 5 58 chr13 59391626 59391814 -60353084 + MER46B DNA MER2_type 199 236 0 234 0 0 0 chr13 59392941 59392967 -60351931 + (A)n Simple_repeat Simple_repeat 1 26 0 526 155 6 138 chr13 59393345 59393519 -60351379 - MLT2C2 LTR ERVL 0 397 247 5336 154 27 12 chr13 59393542 59394717 -60350181 - L1MA8 LINE L1 -1 6290 5098 1396 162 4 15 chr13 59394717 59394983 -60349915 - MLT2C2 LTR ERVL -201 263 1 301 284 71 10 chr13 59395058 59395225 -60349673 - L1ME LINE L1 -397 5765 5575 1989 113 6 35 chr13 59395225 59395536 -60349362 + AluSx SINE Alu 1 302 -10 301 284 71 10 chr13 59395536 59395563 -60349335 - L1ME LINE L1 -587 5575 5551 448 283 87 70 chr13 59395781 59396011 -60348887 - L2 LINE L2 0 3272 3039 1241 193 65 38 chr13 59396200 59396563 -60348335 + MLT2B1 LTR ERVL 4 374 -40 363 60 0 0 chr13 59396563 59396613 -60348285 + (TG)n Simple_repeat Simple_repeat 2 51 0 1241 193 65 38 chr13 59396613 59396656 -60348242 + MLT2B1 LTR ERVL 374 414 0 712 251 116 20 chr13 59397902 59398024 -60346874 + HAL1 LINE L1 769 878 -1629 186 43 0 0 chr13 59398024 59398047 -60346851 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 712 251 116 20 chr13 59398047 59398278 -60346620 + HAL1 LINE L1 878 1156 -1351 328 226 98 45 chr13 59398429 59398562 -60346336 + HAL1 LINE L1 1667 1806 -701 544 240 140 69 chr13 59398624 59399103 -60345795 + HAL1 LINE L1 1995 2507 0 366 237 0 10 chr13 59399112 59399209 -60345689 - L1ME LINE L1 -425 5696 5601 7252 44 1 9 chr13 59399334 59400295 -60344603 + L1PA6 LINE L1 5201 6154 0 23 68 0 0 chr13 59400396 59400440 -60344458 + AT_rich Low_complexity Low_complexity 1 44 0 4958 131 53 2 chr13 59400498 59401306 -60343592 - HUERS-P3b LTR ERV1 -331 7087 6239 180 0 0 0 chr13 59401308 59401328 -60343570 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1440 218 77 10 chr13 59401379 59401769 -60343129 - LTR52 LTR ERVL -3 418 3 180 97 0 0 chr13 59402831 59402862 -60342036 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 1785 60 4 0 chr13 59402862 59403097 -60341801 - LTR17 LTR ERV1 -455 325 90 377 289 132 19 chr13 59405157 59405316 -60339582 + MIR3 SINE MIR 30 206 -2 2283 87 3 0 chr13 59406348 59406634 -60338264 - AluSc SINE Alu -22 287 1 359 21 21 0 chr13 59407099 59407147 -60337751 + (CA)n Simple_repeat Simple_repeat 2 50 0 432 319 19 12 chr13 59407155 59407315 -60337583 - MIR SINE MIR -10 252 92 215 289 0 0 chr13 59408254 59408299 -60336599 + MER5B DNA MER1_type 5 49 -129 2318 237 85 7 chr13 59408312 59409026 -60335872 - L1MC4a LINE L1 0 7808 7039 196 283 0 17 chr13 59409026 59409086 -60335812 + MER5B DNA MER1_type 37 95 -83 269 353 33 49 chr13 59409109 59409293 -60335605 - MIR SINE MIR -79 183 3 198 0 0 0 chr13 59409541 59409563 -60335335 + (CA)n Simple_repeat Simple_repeat 1 22 0 314 286 92 8 chr13 59409690 59409809 -60335089 + MIR SINE MIR 13 141 -121 325 280 59 59 chr13 59410214 59410332 -60334566 + L2 LINE L2 3196 3313 0 603 254 99 17 chr13 59410960 59411141 -60333757 + MLT1J LTR MaLR 253 448 -63 2352 91 0 0 chr13 59411302 59411598 -60333300 - AluSc SINE Alu -13 296 1 831 322 37 7 chr13 59411756 59412054 -60332844 - L3 LINE CR1 -14 1563 1257 1619 178 50 0 chr13 59414020 59414340 -60330558 - L1 LINE L1 -1831 4315 3980 1887 191 20 0 chr13 59414342 59414699 -60330199 + L1PA16 LINE L1 5798 6161 -5 210 294 0 0 chr13 59414766 59414817 -60330081 + MIR SINE MIR 99 149 -59 191 318 0 30 chr13 59415953 59416019 -60328879 - MIR SINE MIR -113 149 86 3012 213 76 58 chr13 59416197 59416769 -60328129 + L1MCb LINE L1 3 563 -5769 228 35 0 0 chr13 59416769 59416798 -60328100 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 3012 213 76 58 chr13 59416798 59417693 -60327205 + L1MCb LINE L1 563 1480 -4852 210 118 0 0 chr13 59418811 59418845 -60326053 + (TG)n Simple_repeat Simple_repeat 1 34 0 224 307 0 4 chr13 59419749 59419839 -60325059 - MIR SINE MIR -63 145 59 220 100 20 40 chr13 59419933 59419983 -60324915 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 1830 143 0 54 chr13 59422939 59423253 -60321645 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr13 59423263 59423285 -60321613 + AT_rich Low_complexity Low_complexity 1 22 0 2502 69 0 0 chr13 59424513 59424816 -60320082 + AluY SINE Alu 1 303 -8 347 302 26 38 chr13 59425658 59425851 -60319047 - L2 LINE L2 -298 2974 2772 421 365 147 16 chr13 59425873 59426424 -60318474 - L2 LINE L2 -686 2628 2006 550 165 0 0 chr13 59426502 59426587 -60318311 - AluJ/FLAM SINE Alu -227 85 1 440 299 29 15 chr13 59427106 59427281 -60317617 + MIR SINE MIR 39 214 -48 897 194 104 15 chr13 59427288 59427489 -60317409 + MER20 DNA MER1_type 1 219 0 395 260 114 0 chr13 59427563 59427686 -60317212 - MIR SINE MIR -70 192 56 388 341 74 6 chr13 59428455 59428631 -60316267 + MIR SINE MIR 2 189 -73 2531 303 120 17 chr13 59428650 59429032 -60315866 - L2 LINE L2 -32 3281 2940 1665 145 0 0 chr13 59429032 59429274 -60315624 + AluSx SINE Alu 58 299 -13 2531 303 120 17 chr13 59429274 59430225 -60314673 - L2 LINE L2 -373 2940 1808 2847 91 0 0 chr13 59430650 59431025 -60313873 + THE1C LTR MaLR 1 375 0 190 318 218 9 chr13 59431340 59431450 -60313448 - L2 LINE L2 -3 3269 3137 24 0 0 0 chr13 59431468 59431492 -60313406 + AT_rich Low_complexity Low_complexity 1 24 0 1040 179 0 34 chr13 59431539 59431718 -60313180 + FAM SINE Alu 1 173 -2 29297 111 13 59 chr13 59432669 59439117 -60305781 + L1PA7 LINE L1 12 6154 0 213 311 133 44 chr13 59439557 59439782 -60305116 + L2 LINE L2 2458 2702 -612 357 216 27 0 chr13 59439825 59439899 -60304999 - MER2 DNA MER2_type 0 345 270 447 101 38 0 chr13 59439928 59440007 -60304891 - MER2 DNA MER2_type -135 210 129 1943 139 69 74 chr13 59440010 59440259 -60304639 - Tigger2a DNA MER2_type -2277 431 183 691 195 0 8 chr13 59440259 59440382 -60304516 - FLAM_A SINE Alu -11 122 1 1943 139 69 74 chr13 59440382 59440565 -60304333 - Tigger2a DNA MER2_type -2525 183 1 701 200 15 0 chr13 59440565 59440694 -60304204 - MER2 DNA MER2_type -214 131 1 4820 139 25 18 chr13 59441131 59441915 -60302983 + MER54B LTR ERVL 3 792 -1 1141 272 83 23 chr13 59442175 59442561 -60302337 - L2 LINE L2 -3 3310 2902 267 352 41 38 chr13 59442869 59443136 -60301762 + L2 LINE L2 636 903 -2411 253 345 79 0 chr13 59443168 59443307 -60301591 + MIR SINE MIR 7 156 -106 23 0 0 0 chr13 59443611 59443634 -60301264 + AT_rich Low_complexity Low_complexity 1 23 0 401 307 89 61 chr13 59443827 59444153 -60300745 + L2 LINE L2 1562 1896 -1418 4278 161 51 1 chr13 59444240 59445048 -60299850 - L1MB7 LINE L1 0 6184 5337 336 319 232 8 chr13 59445061 59445302 -60299596 + L2 LINE L2 2025 2319 -995 496 221 39 77 chr13 59445842 59446023 -60298875 + MER5B DNA MER1_type 4 177 -1 336 299 43 24 chr13 59446181 59446345 -60298553 + LTR67 LTR ERVL 391 557 0 275 328 49 16 chr13 59446360 59446482 -60298416 + L2 LINE L2 2711 2836 -478 317 277 99 75 chr13 59446495 59446708 -60298190 + L1MC/D LINE L1 5582 5799 -2009 259 132 0 0 chr13 59447057 59447095 -60297803 - Charlie3 DNA MER1_type -2636 74 37 * 1763 162 0 29 chr13 59447071 59447385 -60297513 + MER1B DNA MER1_type 35 339 0 237 333 20 10 chr13 59447867 59447966 -60296932 - MIR SINE MIR -115 147 48 2458 99 16 19 chr13 59448358 59448733 -60296165 - THE1C LTR MaLR -1 374 1 9400 113 65 45 chr13 59448733 59450281 -60294617 - THE1C-int LTR MaLR 0 1580 3 2409 118 19 16 chr13 59450283 59450656 -60294242 - THE1C LTR MaLR 0 375 2 257 239 87 43 chr13 59450976 59451114 -60293784 + L1MC/D LINE L1 5679 5822 -1986 2163 128 3 0 chr13 59451227 59451531 -60293367 - AluSx SINE Alu -7 305 1 3568 156 10 3 chr13 59451571 59452172 -60292726 - MER6A DNA MER2_type 0 605 1 388 294 0 0 chr13 59453018 59453110 -60291788 - MIR SINE MIR -108 154 63 253 258 22 11 chr13 59453203 59453292 -60291606 - MER5B DNA MER1_type 0 178 89 236 358 193 22 chr13 59453347 59453740 -60291158 - L2 LINE L2 -919 2395 2071 181 0 0 65 chr13 59453740 59453771 -60291127 + (CAA)n Simple_repeat Simple_repeat 2 30 0 236 358 193 22 chr13 59453771 59453967 -60290931 - L2 LINE L2 -1243 2071 1705 2205 128 3 0 chr13 59454785 59455090 -60289808 + AluSx SINE Alu 1 306 -6 969 345 141 39 chr13 59455119 59455448 -60289450 + L2 LINE L2 1359 1653 -1661 2270 67 0 44 chr13 59455448 59455764 -60289134 + AluY SINE Alu 8 309 -2 969 345 141 39 chr13 59455764 59456633 -60288265 + L2 LINE L2 1653 2724 -590 1615 153 0 15 chr13 59456633 59456895 -60288003 - AluSx SINE Alu -54 258 1 969 345 141 39 chr13 59456895 59457099 -60287799 + L2 LINE L2 2724 2906 -408 278 26 26 0 chr13 59457099 59457138 -60287760 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 351 266 55 0 chr13 59457738 59457847 -60287051 + L2 LINE L2 3199 3313 0 353 359 48 55 chr13 59458066 59458153 -60286745 + L2 LINE L2 2985 3071 -201 288 0 0 0 chr13 59458153 59458185 -60286713 + (CA)n Simple_repeat Simple_repeat 2 33 0 353 359 48 55 chr13 59458185 59458387 -60286511 + L2 LINE L2 3071 3272 0 213 235 0 0 chr13 59460367 59460418 -60284480 + (TA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr13 59460981 59461003 -60283895 + AT_rich Low_complexity Low_complexity 1 22 0 200 273 0 36 chr13 59462813 59462868 -60282030 + MIR SINE MIR 204 256 -6 302 317 39 50 chr13 59463280 59463460 -60281438 + L3 LINE CR1 919 1096 -481 356 289 175 36 chr13 59464112 59464306 -60280592 - MIR SINE MIR -16 246 26 21 36 0 0 chr13 59464724 59464752 -60280146 + AT_rich Low_complexity Low_complexity 1 28 0 2009 133 0 0 chr13 59465565 59465888 -60279010 + AluSc SINE Alu 1 323 0 2687 97 5 20 chr13 59466034 59466437 -60278461 + L1PA12 LINE L1 5757 6153 -15 357 43 0 0 chr13 59466442 59466489 -60278409 + (CA)n Simple_repeat Simple_repeat 2 48 0 320 243 112 9 chr13 59466640 59466747 -60278151 + MIR SINE MIR 32 149 -113 2127 136 0 3 chr13 59466845 59467155 -60277743 - AluSc SINE Alu 0 309 1 584 239 62 17 chr13 59467977 59468153 -60276745 - L2 LINE L2 0 3313 3130 418 272 131 11 chr13 59468192 59468515 -60276383 + LTR16C LTR ERVL 71 477 -14 720 275 128 63 chr13 59468528 59468558 -60276340 - L2 LINE L2 -144 3169 3142 2326 88 10 0 chr13 59468558 59468854 -60276044 + AluSg SINE Alu 1 299 -11 720 275 128 63 chr13 59468854 59469369 -60275529 - L2 LINE L2 -171 3142 2600 1764 181 0 7 chr13 59469457 59469749 -60275149 + AluJb SINE Alu 1 290 -22 467 234 25 106 chr13 59469865 59470100 -60274798 - MER112 DNA MER1_type -41 219 4 1801 165 93 5 chr13 59470112 59470500 -60274398 + L1MB5 LINE L1 5747 6168 -6 1115 268 90 0 chr13 59470520 59470795 -60274103 - L2 LINE L2 -706 2608 2297 2043 149 49 3 chr13 59470795 59471143 -60273755 - MLT1A1 LTR MaLR 0 365 2 1115 268 90 0 chr13 59471143 59471199 -60273699 - L2 LINE L2 -1017 2297 2247 23 33 0 0 chr13 59471487 59471517 -60273381 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 59472323 59472344 -60272554 + AT_rich Low_complexity Low_complexity 1 21 0 232 164 182 0 chr13 59472975 59473030 -60271868 - L1ME4a LINE L1 -80 6041 5977 462 101 0 0 chr13 59473086 59473155 -60271743 + (TG)n Simple_repeat Simple_repeat 2 70 0 801 184 7 0 chr13 59473181 59473317 -60271581 + FRAM SINE Alu 33 169 -7 1194 129 67 5 chr13 59473370 59473594 -60271304 - L1MB1 LINE L1 -7 6161 5924 371 282 34 0 chr13 59473626 59473775 -60271123 - L1ME4a LINE L1 -251 5870 5717 784 290 79 28 chr13 59473781 59474247 -60270651 - Tigger8 DNA MER2_type -18 648 159 198 103 0 0 chr13 59474692 59474721 -60270177 + (A)n Simple_repeat Simple_repeat 1 29 0 346 172 280 11 chr13 59474727 59474820 -60270078 + L2 LINE L2 3191 3308 -5 198 103 0 0 chr13 59474840 59474869 -60270029 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 618 277 40 33 chr13 59474884 59475158 -60269740 - MARNA DNA Mariner -268 318 43 524 276 153 18 chr13 59475360 59475588 -60269310 - MIR SINE MIR -2 260 2 2491 152 50 76 chr13 59475829 59476279 -60268619 + L1MA7 LINE L1 5688 6152 -139 257 30 0 0 chr13 59476279 59476312 -60268586 + U2 snRNA snRNA 1 33 -155 2491 152 50 76 chr13 59476312 59476449 -60268449 + L1MA7 LINE L1 6152 6291 0 183 42 0 0 chr13 59477583 59477607 -60267291 + (CA)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr13 59477659 59477680 -60267218 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 209 139 23 0 chr13 59478767 59478810 -60266088 + (CA)n Simple_repeat Simple_repeat 2 45 0 1157 126 51 0 chr13 59479681 59479856 -60265042 + AluSq SINE Alu 119 302 -11 295 326 183 11 chr13 59480007 59480182 -60264716 - MIR SINE MIR -32 230 26 263 314 0 0 chr13 59480383 59480453 -60264445 + L2 LINE L2 3197 3266 -6 295 188 0 0 chr13 59480685 59480733 -60264165 + L2 LINE L2 3223 3270 -2 366 243 243 21 chr13 59480827 59480971 -60263927 + MER5A DNA MER1_type 13 188 -1 429 318 70 45 chr13 59481348 59481549 -60263349 + MIR SINE MIR 11 216 -46 259 223 256 41 chr13 59481899 59482020 -60262878 + MIR SINE MIR 15 161 -101 1970 133 4 4 chr13 59482210 59482538 -60262360 + AluSg SINE Alu 1 328 0 2211 101 6 25 chr13 59482538 59482856 -60262042 + AluSp SINE Alu 1 312 -1 215 314 109 39 chr13 59486565 59486721 -60258177 + MIR SINE MIR 20 186 -76 1427 190 13 40 chr13 59487032 59487332 -60257566 + AluJo SINE Alu 12 303 -9 917 158 31 72 chr13 59487640 59487862 -60257036 - MER20 DNA MER1_type -4 215 3 2610 161 4 25 chr13 59488145 59488635 -60256263 - MER66B LTR ERV1 -1 485 6 22 35 0 0 chr13 59489024 59489053 -60255845 + AT_rich Low_complexity Low_complexity 1 29 0 2091 117 3 0 chr13 59489299 59489582 -60255316 + AluSx SINE Alu 2 285 -27 204 40 0 0 chr13 59489585 59489610 -60255288 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 317 349 41 14 chr13 59491422 59491568 -60253330 - MER5A DNA MER1_type -39 150 1 414 269 61 66 chr13 59492000 59492212 -60252686 + MIR SINE MIR 2 212 -50 480 284 134 40 chr13 59492443 59492919 -60251979 + LTR33 LTR ERVL 1 521 0 2194 130 0 0 chr13 59495145 59495453 -60249445 + AluSx SINE Alu 5 312 0 341 296 98 61 chr13 59495495 59495772 -60249126 + L2 LINE L2 2569 2855 -459 699 233 52 9 chr13 59495806 59496038 -60248860 - L1MD3 LINE L1 0 7995 7754 564 299 96 52 chr13 59496114 59496312 -60248586 + L2 LINE L2 2934 3122 -191 1813 121 80 52 chr13 59496312 59496676 -60248222 + THE1C LTR MaLR 2 375 0 564 299 96 52 chr13 59496676 59496841 -60248057 + L2 LINE L2 3122 3313 0 222 260 0 0 chr13 59497032 59497082 -60247816 - L2 LINE L2 -1 3271 3222 1968 198 28 24 chr13 59497946 59498500 -60246398 + MLT1F1 LTR MaLR 1 567 0 2387 88 3 0 chr13 59498738 59499034 -60245864 - AluSp SINE Alu -16 297 1 462 294 99 38 chr13 59499236 59499529 -60245369 - LTR16A1 LTR ERVL 0 457 147 233 281 0 0 chr13 59500555 59500612 -60244286 + GA-rich Low_complexity Low_complexity 4 60 0 2283 101 3 3 chr13 59500814 59501111 -60243787 - AluSp SINE Alu -16 297 1 220 370 87 16 chr13 59501319 59501446 -60243452 - MIR3 SINE MIR -64 144 9 1550 204 112 22 chr13 59501475 59501877 -60243021 - MER74C LTR ERVL -7 453 16 346 345 81 0 chr13 59502005 59502153 -60242745 + MIR SINE MIR 47 206 -56 1723 50 129 0 chr13 59502853 59503093 -60241805 - AluY SINE Alu -38 273 3 2039 146 10 0 chr13 59503362 59503670 -60241228 - AluSx SINE Alu -1 311 1 382 295 9 0 chr13 59503945 59504057 -60240841 - MLT1L LTR MaLR -369 246 134 222 362 69 0 chr13 59504167 59504283 -60240615 - MIR SINE MIR -45 217 94 209 310 56 0 chr13 59506316 59506387 -60238511 - MIR SINE MIR -175 87 13 1588 115 45 0 chr13 59506591 59506860 -60238038 - L1MA5A LINE L1 -3 6294 6014 530 266 100 48 chr13 59506897 59507126 -60237772 - MIR SINE MIR 0 262 22 2289 112 0 0 chr13 59507862 59508166 -60236732 + AluSg SINE Alu 1 304 -6 21 71 0 0 chr13 59508350 59508392 -60236506 + AT_rich Low_complexity Low_complexity 1 42 0 302 293 20 20 chr13 59509264 59509363 -60235535 + MIR3 SINE MIR 64 162 -46 22 35 0 0 chr13 59509554 59509583 -60235315 + AT_rich Low_complexity Low_complexity 1 29 0 247 246 18 0 chr13 59509807 59509864 -60235034 + GA-rich Low_complexity Low_complexity 3 60 0 218 178 22 0 chr13 59510619 59510664 -60234234 - L2 LINE L2 0 3313 3268 858 219 0 22 chr13 59511304 59511482 -60233416 - FAM SINE Alu -1 174 1 2437 72 0 13 chr13 59511522 59511828 -60233070 + AluY SINE Alu 1 302 -9 1571 238 52 33 chr13 59512655 59513098 -60231800 + MER77 LTR ERV1 62 516 -89 1882 135 48 58 chr13 59513098 59513274 -60231624 + THE1C LTR MaLR 1 177 -198 2189 135 0 0 chr13 59513274 59513578 -60231320 + AluSq SINE Alu 2 305 -8 1882 135 48 58 chr13 59513578 59513780 -60231118 + THE1C LTR MaLR 177 375 0 1571 238 52 33 chr13 59513780 59513820 -60231078 + MER77 LTR ERV1 516 554 -51 521 316 9 33 chr13 59514800 59515012 -60229886 - MIR SINE MIR -8 254 48 297 296 92 0 chr13 59515397 59515495 -60229403 - L2 LINE L2 -10 3262 3156 220 323 0 0 chr13 59515725 59515787 -60229111 + (CA)n Simple_repeat Simple_repeat 1 62 0 1614 179 25 47 chr13 59517209 59517398 -60227500 - AluJb SINE Alu 0 312 131 2069 120 3 43 chr13 59517398 59517722 -60227176 - AluSq SINE Alu -2 311 1 1614 179 25 47 chr13 59517722 59517851 -60227047 - AluJb SINE Alu -181 131 1 1046 244 4 8 chr13 59517893 59518143 -60226755 - MER87 LTR ERV1 0 541 293 13098 124 15 28 chr13 59518165 59521461 -60223437 + L1P3 LINE L1 8 3337 -3124 7050 47 4 14 chr13 59521461 59522397 -60222501 + L1PA7 LINE L1 4429 5351 -803 2211 114 7 0 chr13 59522397 59522696 -60222202 + AluY SINE Alu 1 301 -10 7050 47 4 14 chr13 59522696 59523493 -60221405 + L1PA7 LINE L1 5351 6154 0 586 235 8 22 chr13 59523504 59523737 -60221161 - MER87 LTR ERV1 -267 274 1 21 0 0 0 chr13 59523953 59523974 -60220924 + AT_rich Low_complexity Low_complexity 1 21 0 537 330 80 0 chr13 59524740 59524964 -60219934 + MIR SINE MIR 13 254 -8 228 254 118 18 chr13 59524966 59525076 -60219822 + L1MC4 LINE L1 6593 6713 -1329 638 162 15 157 chr13 59525094 59525291 -60219607 - FAM SINE Alu -6 169 1 1009 264 60 35 chr13 59525463 59525860 -60219038 + LTR16C LTR ERVL 85 491 0 562 251 145 18 chr13 59526135 59526362 -60218536 - L1MC4 LINE L1 -386 7502 7167 49 43 0 0 chr13 59526424 59526494 -60218404 + AT_rich Low_complexity Low_complexity 1 70 0 1118 254 151 22 chr13 59526645 59527535 -60217363 + L1MC4 LINE L1 6723 7911 -131 297 257 127 55 chr13 59527614 59527654 -60217244 + HAL1 LINE L1 684 720 -1787 2318 120 0 3 chr13 59527654 59527963 -60216935 + AluSx SINE Alu 1 308 -4 297 257 127 55 chr13 59527963 59528175 -60216723 + HAL1 LINE L1 720 954 -1553 775 97 0 0 chr13 59528206 59528320 -60216578 - L1PB1 LINE L1 0 6867 6754 4695 190 4 1 chr13 59528320 59529858 -60215040 - L1PB1 LINE L1 -367 6500 4959 2808 212 36 3 chr13 59529853 59530583 -60214315 - L1PB1 LINE L1 -2878 3984 3231 * 9006 114 121 7 chr13 59530585 59532159 -60212739 - L1PB1 LINE L1 -4477 2386 634 1090 155 5 0 chr13 59532159 59532352 -60212546 - L1PB1 LINE L1 -6663 200 7 355 225 108 17 chr13 59532698 59532818 -60212080 + MIR SINE MIR 123 253 -9 593 262 149 23 chr13 59533015 59533317 -60211581 + LTR50 LTR ERVL 5 344 -451 548 187 313 5 chr13 59533340 59533554 -60211344 + LTR50 LTR ERVL 516 795 0 276 77 0 0 chr13 59534227 59534266 -60210632 + (TG)n Simple_repeat Simple_repeat 2 40 0 212 188 75 0 chr13 59534916 59534996 -60209902 + (ATATG)n Simple_repeat Simple_repeat 4 89 0 1489 180 49 55 chr13 59535884 59536251 -60208647 - MLT1A1 LTR MaLR 0 365 1 409 299 137 64 chr13 59536421 59536444 -60208454 + L2 LINE L2 2761 2781 -532 2155 96 10 3 chr13 59536444 59536737 -60208161 - AluSq SINE Alu -18 295 1 409 299 137 64 chr13 59536737 59536995 -60207903 + L2 LINE L2 2781 3065 -248 2424 82 3 0 chr13 59537287 59537592 -60207306 - AluY SINE Alu -5 306 1 516 300 30 39 chr13 59537880 59538110 -60206788 + MIR SINE MIR 4 231 -31 584 233 102 5 chr13 59538110 59538325 -60206573 + L1MC4a LINE L1 5525 5760 -2048 346 250 29 39 chr13 59538362 59538466 -60206432 - L1MC4 LINE L1 -1326 6716 6614 539 241 138 31 chr13 59538483 59538803 -60206095 + L1MC4a LINE L1 5959 6312 -1496 725 256 81 51 chr13 59538820 59539250 -60205648 + L1MC4 LINE L1 7505 7947 -95 22 35 0 0 chr13 59539988 59540017 -60204881 + AT_rich Low_complexity Low_complexity 1 29 0 639 223 23 0 chr13 59540875 59541005 -60203893 + MIR SINE MIR 62 194 -68 362 356 53 0 chr13 59541220 59541352 -60203546 - MER91C DNA MER1_type 0 140 2 1536 166 3 59 chr13 59541532 59541821 -60203077 + AluJb SINE Alu 40 312 0 908 171 41 5 chr13 59542100 59542416 -60202482 + MLT1B LTR MaLR 3 388 -2 200 59 29 0 chr13 59542695 59542729 -60202169 + (TC)n Simple_repeat Simple_repeat 2 36 0 342 0 0 0 chr13 59542731 59542769 -60202129 + (CA)n Simple_repeat Simple_repeat 2 39 0 210 294 0 0 chr13 59542770 59542821 -60202077 + (TA)n Simple_repeat Simple_repeat 1 51 0 1150 155 16 36 chr13 59542821 59543014 -60201884 - AluJb SINE Alu -33 279 91 723 174 0 0 chr13 59543029 59543144 -60201754 - AluJb SINE Alu -197 115 1 197 333 29 0 chr13 59543796 59543865 -60201033 + MIR SINE MIR 48 118 -90 359 381 40 0 chr13 59544210 59544336 -60200562 - L2 LINE L2 -5 3267 3137 5192 88 34 3 chr13 59544451 59545221 -60199677 + L1MA2 LINE L1 5511 6304 0 1400 231 54 8 chr13 59545251 59545624 -60199274 + MLT1B LTR MaLR 1 390 0 185 205 26 0 chr13 59546094 59546133 -60198765 + L2 LINE L2 3272 3311 -2 1194 183 204 52 chr13 59547184 59547232 -60197666 + MSTD LTR MaLR 1 40 -356 3333 118 4 24 chr13 59547232 59547739 -60197159 - LOR1a LTR ERV1 0 497 1 1194 183 204 52 chr13 59547739 59548034 -60196864 + MSTD LTR MaLR 40 396 0 231 36 0 0 chr13 59548106 59548134 -60196764 + (T)n Simple_repeat Simple_repeat 1 28 0 5735 115 45 0 chr13 59548177 59549115 -60195783 - L1PA14 LINE L1 -4 6157 5197 684 334 58 15 chr13 59549378 59549788 -60195110 - LTR16A LTR ERVL -7 443 16 236 246 35 0 chr13 59550584 59550641 -60194257 - MIR SINE MIR -107 155 97 2327 84 0 44 chr13 59551737 59552057 -60192841 + AluY SINE Alu 1 306 -5 303 253 0 22 chr13 59552324 59552415 -60192483 - MER87 LTR ERV1 -58 483 395 1033 184 42 17 chr13 59552430 59552669 -60192229 - LTR38 LTR ERV1 -160 396 152 225 275 58 0 chr13 59552919 59552988 -60191910 - L2 LINE L2 -65 3248 3176 2375 109 22 27 chr13 59553018 59553384 -60191514 + THE1B LTR MaLR 1 364 0 489 34 0 0 chr13 59553805 59553864 -60191034 + (CATA)n Simple_repeat Simple_repeat 4 62 0 1992 180 18 55 chr13 59553970 59554458 -60190440 + MER31A LTR ERV1 7 476 -9 244 296 173 0 chr13 59554483 59554564 -60190334 + MIR3 SINE MIR 93 187 -21 206 319 33 22 chr13 59554718 59554809 -60190089 + MIR SINE MIR 121 212 -50 915 179 6 28 chr13 59554913 59555105 -60189793 + MER20 DNA MER1_type 4 187 -32 1410 137 9 5 chr13 59555632 59555844 -60189054 + AluJo SINE Alu 1 213 -99 1754 186 7 7 chr13 59556007 59556313 -60188585 - AluJo SINE Alu -6 306 1 186 43 0 0 chr13 59558528 59558551 -60186347 + (T)n Simple_repeat Simple_repeat 1 23 0 1301 81 0 16 chr13 59558572 59558757 -60186141 + L1PA8 LINE L1 5991 6172 0 591 176 8 15 chr13 59559536 59559667 -60185231 + MSTD LTR MaLR 1 130 -266 207 0 0 0 chr13 59560238 59560261 -60184637 + (A)n Simple_repeat Simple_repeat 1 23 0 821 177 0 0 chr13 59560287 59560417 -60184481 + FLAM_A SINE Alu 1 130 -3 377 276 69 55 chr13 59560632 59560777 -60184121 - MIR3 SINE MIR 0 208 62 325 409 0 0 chr13 59560792 59560919 -60183979 + MIR SINE MIR 28 154 -108 1915 134 50 20 chr13 59560976 59561333 -60183565 - THE1C LTR MaLR 0 375 8 2268 126 61 7 chr13 59561366 59561778 -60183120 - Tigger2 DNA MER2_type 0 2718 2285 335 146 0 18 chr13 59561782 59561837 -60183061 + MER8 DNA MER2_type 186 239 0 2468 78 3 10 chr13 59561946 59562255 -60182643 - AluSp SINE Alu -6 307 1 1865 198 6 8 chr13 59562400 59562759 -60182139 - MLT1A1 LTR MaLR -7 358 1 216 250 18 0 chr13 59563133 59563189 -60181709 + MIR SINE MIR 204 260 -2 594 217 22 7 chr13 59563502 59563640 -60181258 + HsTC2 DNA Tc2 1 140 -1758 1027 207 68 44 chr13 59563647 59563985 -60180913 + HsTC2 DNA Tc2 1268 1789 -109 364 350 41 12 chr13 59563997 59564337 -60180561 + L1MEc LINE L1 57 406 -5990 615 111 0 10 chr13 59564900 59564999 -60179899 + Charlie3 DNA MER1_type 2615 2712 0 1280 263 25 21 chr13 59565011 59565494 -60179404 + L1M4 LINE L1 4677 5161 -985 321 169 11 0 chr13 59565563 59565652 -60179246 - MER96B DNA MER1_type? -243 174 85 715 279 39 14 chr13 59565663 59565946 -60178952 - L1MEc LINE L1 -6097 299 10 327 331 8 8 chr13 59567228 59567352 -60177546 - MIR3 SINE MIR -10 198 75 2456 90 0 3 chr13 59567533 59567845 -60177053 + AluY SINE Alu 1 311 0 1934 102 21 3 chr13 59568332 59568616 -60176282 - L1PB1 LINE L1 -5 6146 5858 5708 148 5 11 chr13 59568616 59570216 -60174682 + L1PB1 LINE L1 4556 6150 -1 11895 180 38 19 chr13 59570220 59570338 -60174560 - L1PB1 LINE L1 -278 6589 6475 2101 126 3 0 chr13 59570338 59570631 -60174267 - AluSx SINE Alu -18 294 1 11895 180 38 19 chr13 59570631 59571679 -60173219 - L1PB1 LINE L1 -392 6475 5448 2366 104 0 0 chr13 59571679 59571988 -60172910 - AluY SINE Alu -2 309 1 11895 180 38 19 chr13 59571988 59576524 -60168374 - L1PB1 LINE L1 -1419 5448 635 1167 130 5 0 chr13 59576524 59576724 -60168174 - L1PB1 LINE L1 -6662 201 1 500 259 107 36 chr13 59576897 59577121 -60167777 - MIR SINE MIR -15 247 8 1840 238 36 70 chr13 59577151 59577769 -60167129 - MLT1E2 LTR MaLR -6 620 24 198 304 67 44 chr13 59577985 59578120 -60166778 - L2 LINE L2 -455 2859 2722 213 65 0 0 chr13 59579553 59579584 -60165314 + (A)n Simple_repeat Simple_repeat 1 31 0 6301 103 63 59 chr13 59581065 59582906 -60161992 + pTR5 LTR ERV1 741 2438 0 627 216 58 22 chr13 59582908 59583047 -60161851 - MIR SINE MIR -106 156 13 331 235 32 26 chr13 59583352 59583663 -60161235 + (CA)n Simple_repeat Simple_repeat 1 313 0 243 0 0 0 chr13 59584930 59584957 -60159941 + (A)n Simple_repeat Simple_repeat 1 27 0 209 290 210 32 chr13 59586096 59586220 -60158678 - MIR SINE MIR -44 218 73 371 266 170 26 chr13 59587023 59587252 -60157646 - L2 LINE L2 0 3313 3052 1124 193 65 88 chr13 59587339 59587738 -60157160 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr13 59587758 59587780 -60157118 + AT_rich Low_complexity Low_complexity 1 22 0 1619 140 25 146 chr13 59589250 59589694 -60155204 - MLT1B LTR MaLR 0 390 1 211 388 58 0 chr13 59590113 59590234 -60154664 + L2 LINE L2 3139 3266 -6 2141 113 7 3 chr13 59590266 59590566 -60154332 + AluY SINE Alu 1 301 -10 205 330 123 66 chr13 59592057 59592375 -60152523 - L2 LINE L2 -407 2907 2572 555 173 0 0 chr13 59594348 59594451 -60150447 + MER5A DNA MER1_type 4 106 -83 465 241 128 8 chr13 59595209 59595342 -60149556 + MIR3 SINE MIR 41 189 -19 2146 152 0 0 chr13 59595661 59595963 -60148935 - AluSx SINE Alu -10 302 1 250 290 100 10 chr13 59596042 59596142 -60148756 - MIR SINE MIR -56 152 44 1927 166 0 3 chr13 59596378 59596680 -60148218 - AluJb SINE Alu -11 301 1 202 195 24 0 chr13 59596857 59596898 -60148000 + L3b LINE CR1 1527 1568 -15 1104 304 179 24 chr13 59596901 59597612 -60147286 + L3 LINE CR1 750 1570 -7 222 286 104 0 chr13 59598831 59598908 -60145990 - L3b LINE CR1 -92 1491 1407 271 222 120 60 chr13 59599344 59599461 -60145437 - MIR SINE MIR -71 191 68 1453 232 47 17 chr13 59600977 59601528 -60143370 - MLT2F LTR ERVL -54 609 1 1484 213 57 42 chr13 59601582 59602037 -60142861 - MLT1C LTR MaLR 0 467 6 218 295 16 66 chr13 59602297 59602363 -60142535 - MIR SINE MIR -127 135 76 1964 125 33 7 chr13 59602363 59602667 -60142231 + AluSx SINE Alu 1 312 0 218 295 16 66 chr13 59602667 59602722 -60142176 - MIR SINE MIR -186 76 20 339 282 150 81 chr13 59602778 59603051 -60141847 + L2 LINE L2 2976 3267 -5 1522 151 0 8 chr13 59603326 59603565 -60141333 - AluSg/x SINE Alu 0 312 76 2160 96 10 7 chr13 59603565 59603865 -60141033 - AluY SINE Alu -8 303 2 440 274 178 6 chr13 59604406 59604563 -60140335 + MER5A DNA MER1_type 4 187 -2 428 263 119 0 chr13 59604595 59604755 -60140143 + MIR3 SINE MIR 15 193 -15 317 303 119 0 chr13 59604747 59604856 -60140042 + MER5A DNA MER1_type 68 189 0 * 239 290 130 0 chr13 59606513 59606613 -60138285 + MIR SINE MIR 100 212 -50 474 224 0 0 chr13 59606668 59606766 -60138132 + MER5A DNA MER1_type 9 106 -83 3968 164 94 11 chr13 59607952 59608714 -60136184 + LTR1B LTR ERV1 1 826 0 335 315 31 8 chr13 59608949 59609079 -60135819 + MIR3 SINE MIR 72 204 -4 1507 185 118 14 chr13 59609107 59609463 -60135435 + MLT2C1 LTR ERVL 2 394 -3 491 348 19 0 chr13 59609564 59609771 -60135127 + L1MB1 LINE L1 414 624 -5679 297 381 0 40 chr13 59609782 59609955 -60134943 + L1M3d LINE L1 919 1084 -5219 335 289 13 40 chr13 59610024 59610176 -60134722 + L1MB1 LINE L1 669 816 -5487 294 95 0 48 chr13 59610256 59610319 -60134579 + (GAA)n Simple_repeat Simple_repeat 1 60 0 11700 212 41 12 chr13 59610389 59615237 -60129661 + L1MB1 LINE L1 802 5788 -616 1836 90 41 0 chr13 59615237 59615481 -60129417 + AluSq SINE Alu 44 297 -16 11700 212 41 12 chr13 59615481 59616112 -60128786 + L1MB1 LINE L1 5788 6399 -5 216 281 171 0 chr13 59616241 59616323 -60128575 - L3b LINE CR1 -140 1443 1348 1392 161 9 0 chr13 59616493 59616746 -60128152 + AluSx SINE Alu 62 316 0 828 207 11 6 chr13 59616883 59617062 -60127836 - MER3 DNA MER1_type -29 180 1 392 235 12 0 chr13 59618688 59618773 -60126125 + MER21B LTR ERV1 5 90 -773 2602 231 92 13 chr13 59618883 59619374 -60125524 + MER21B LTR ERV1 98 662 -201 2322 70 0 0 chr13 59619374 59619691 -60125207 - AluY SINE Alu 0 317 1 2602 231 92 13 chr13 59619691 59619894 -60125004 + MER21B LTR ERV1 662 848 -15 381 318 60 7 chr13 59620014 59620165 -60124733 - MIR SINE MIR -72 190 32 180 352 39 16 chr13 59620659 59620787 -60124111 - L2 LINE L2 -5 3267 3137 353 256 186 26 chr13 59621087 59621243 -60123655 + MER5A DNA MER1_type 9 189 0 386 117 17 0 chr13 59621408 59621468 -60123430 + U7 snRNA snRNA 1 61 -2 189 178 0 0 chr13 59622399 59622444 -60122454 + (TG)n Simple_repeat Simple_repeat 2 46 0 235 323 134 55 chr13 59623064 59623281 -60121617 - L2 LINE L2 -2 3270 3037 1071 231 49 0 chr13 59623620 59623845 -60121053 + MIR SINE MIR 23 258 -4 2916 116 34 9 chr13 59624019 59624422 -60120476 + MLT2A2 LTR ERVL 3 419 -34 225 0 0 0 chr13 59624422 59624447 -60120451 + (TG)n Simple_repeat Simple_repeat 2 26 0 2916 116 34 9 chr13 59624447 59624483 -60120415 + MLT2A2 LTR ERVL 419 453 0 25 0 0 0 chr13 59625670 59625695 -60119203 + AT_rich Low_complexity Low_complexity 1 25 0 2110 75 55 38 chr13 59626920 59627099 -60117799 - AluY SINE Alu -8 303 116 2385 77 3 0 chr13 59627099 59627409 -60117489 - AluY SINE Alu 0 311 1 2110 75 55 38 chr13 59627409 59627522 -60117376 - AluY SINE Alu -195 116 6 287 330 220 5 chr13 59627710 59627919 -60116979 + MIR SINE MIR 3 256 -6 2484 151 24 19 chr13 59628668 59629092 -60115806 - MSTB LTR MaLR 0 426 1 205 320 100 0 chr13 59629783 59629883 -60115015 + L2 LINE L2 3202 3311 -2 2296 100 6 10 chr13 59630493 59630804 -60114094 - AluSg SINE Alu 0 310 1 196 368 93 15 chr13 59631158 59631362 -60113536 - MIR SINE MIR -14 248 29 861 266 28 48 chr13 59631764 59632012 -60112886 + MIR SINE MIR 20 262 0 284 267 46 61 chr13 59632323 59632454 -60112444 + MIR SINE MIR 107 235 -27 195 200 25 25 chr13 59632429 59632469 -60112429 + L2 LINE L2 3256 3295 -18 * 1742 149 89 0 chr13 59632469 59632785 -60112113 + MER2 DNA MER2_type 1 344 0 2375 81 10 3 chr13 59633979 59634287 -60110611 - AluSp SINE Alu -3 310 1 338 351 23 52 chr13 59634729 59634903 -60109995 - MER91A DNA MER1_type 0 196 28 881 254 9 5 chr13 59637876 59638096 -60106802 - MER58A DNA MER1_type -2 222 2 1972 172 31 18 chr13 59638266 59638650 -60106248 + MLT1B LTR MaLR 2 390 0 554 241 226 19 chr13 59638735 59639001 -60105897 + MLT1H LTR MaLR 229 549 0 2186 244 54 16 chr13 59639184 59639762 -60105136 - MLT1E2 LTR MaLR -2 624 25 1895 160 3 19 chr13 59639829 59640142 -60104756 + AluJb SINE Alu 2 309 -3 817 273 138 15 chr13 59640637 59641036 -60103862 - MLT1L LTR MaLR 0 615 168 295 233 151 115 chr13 59641038 59641317 -60103581 + L2 LINE L2 3025 3313 0 1232 169 5 10 chr13 59641791 59641998 -60102900 + AluJo SINE Alu 1 206 -106 495 101 13 0 chr13 59642480 59642559 -60102339 + MADE1 DNA Mariner 1 80 0 1898 203 30 140 chr13 59642862 59642943 -60101955 - L1MC4a LINE L1 -865 6943 6855 2220 84 0 0 chr13 59642943 59643238 -60101660 + AluSc SINE Alu 5 299 0 1898 203 30 140 chr13 59643238 59643898 -60101000 - L1MC4a LINE L1 -953 6855 6283 723 312 137 22 chr13 59644914 59645764 -60099134 + L2 LINE L2 2375 3309 -4 337 327 183 51 chr13 59646841 59647221 -60097677 + L2 LINE L2 1102 1430 -1884 2381 92 0 13 chr13 59647221 59647536 -60097362 - AluY SINE Alu 0 311 1 337 327 183 51 chr13 59647536 59648529 -60096369 + L2 LINE L2 1430 2657 -657 2352 65 0 39 chr13 59649936 59650243 -60094655 - AluY SINE Alu -1 310 16 797 192 22 45 chr13 59650343 59650567 -60094331 + L1 LINE L1 2699 2917 -3229 725 184 0 48 chr13 59650567 59650714 -60094184 - FLAM_C SINE Alu -3 140 1 1838 215 78 11 chr13 59650715 59651344 -60093554 + L1 LINE L1 2909 3579 -2567 322 356 23 52 chr13 59651554 59651728 -60093170 - MER91A DNA MER1_type 0 196 28 2196 118 3 13 chr13 59653100 59653414 -60091484 + AluY SINE Alu 1 311 0 249 328 74 26 chr13 59653780 59653969 -60090929 - MLT1L LTR MaLR -65 550 353 826 220 24 19 chr13 59654018 59654227 -60090671 - MLT1A1 LTR MaLR -133 232 23 904 148 148 0 chr13 59654634 59654816 -60090082 - MER3 DNA MER1_type 0 209 1 237 171 114 14 chr13 59655275 59655345 -60089553 + MER68 LTR ERV1 438 514 -48 295 308 115 0 chr13 59655643 59655773 -60089125 + MIR SINE MIR 118 262 0 627 112 9 26 chr13 59656305 59656421 -60088477 + LTR9B LTR ERV1 445 558 -86 1302 208 13 18 chr13 59657081 59657397 -60087501 + MLT1A1 LTR MaLR 50 365 0 250 322 85 5 chr13 59657951 59658150 -60086748 + L1ME LINE L1 5637 5851 -270 617 285 82 43 chr13 59658366 59658833 -60086065 - MLT1J LTR MaLR -7 455 19 22 56 0 0 chr13 59659062 59659098 -60085800 + AT_rich Low_complexity Low_complexity 1 36 0 248 273 40 40 chr13 59659407 59659506 -60085392 + L3 LINE CR1 632 730 -847 12095 178 39 26 chr13 59660295 59662029 -60082869 + L1MA4 LINE L1 1 1710 -4772 252 59 0 0 chr13 59662029 59662063 -60082835 + (CA)n Simple_repeat Simple_repeat 1 34 0 12095 178 39 26 chr13 59662063 59663427 -60081471 + L1MA4 LINE L1 1710 3054 -3428 742 173 0 50 chr13 59663427 59663566 -60081332 - FLAM_C SINE Alu 0 133 2 12095 178 39 26 chr13 59663566 59665892 -60079006 + L1MA4 LINE L1 3054 5489 -993 297 0 0 0 chr13 59665892 59665925 -60078973 + (CA)n Simple_repeat Simple_repeat 2 34 0 12095 178 39 26 chr13 59665925 59666646 -60078252 + L1MA4 LINE L1 5489 6199 -283 23 0 0 0 chr13 59666656 59666679 -60078219 + AT_rich Low_complexity Low_complexity 1 23 0 2119 207 80 65 chr13 59667029 59667740 -60077158 - MER21B LTR ERV1 -48 815 94 856 296 77 27 chr13 59668112 59668629 -60076269 - ERVL LTR ERVL -341 5423 4881 702 181 20 7 chr13 59668721 59668870 -60076028 + MLT1A1 LTR MaLR 204 354 -11 978 255 34 10 chr13 59668881 59669179 -60075719 - ERVL LTR ERVL -939 4825 4521 387 60 0 0 chr13 59669413 59669463 -60075435 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 214 104 21 21 chr13 59669506 59669554 -60075344 + (TTC)n Simple_repeat Simple_repeat 1 48 0 193 375 10 0 chr13 59671067 59671163 -60073735 - L2 LINE L2 -665 2649 2553 2335 81 0 34 chr13 59671519 59671841 -60073057 - AluY SINE Alu 0 311 1 324 70 0 0 chr13 59671884 59671927 -60072971 + (CA)n Simple_repeat Simple_repeat 1 43 0 298 253 0 0 chr13 59672647 59672726 -60072172 - MER116 DNA Mariner -1 79 1 255 309 106 24 chr13 59673941 59674064 -60070834 - L2 LINE L2 -1 3271 3139 471 268 3 13 chr13 59674362 59674514 -60070384 + MIR SINE MIR 8 143 -65 309 302 63 0 chr13 59674881 59675007 -60069891 - MIR3 SINE MIR -6 202 69 258 333 0 0 chr13 59675159 59675225 -60069673 - L2 LINE L2 -213 3059 2994 266 328 106 16 chr13 59675443 59675632 -60069266 + MIR SINE MIR 3 208 -54 22 0 0 0 chr13 59675828 59675850 -60069048 + AT_rich Low_complexity Low_complexity 1 22 0 2251 215 130 95 chr13 59677189 59678396 -60066502 + Charlie2a DNA MER1_type 1 1249 -1613 1253 120 32 33 chr13 59678400 59678659 -60066239 - THE1C LTR MaLR 0 428 158 864 97 0 9 chr13 59678659 59678772 -60066126 - AluSq/x SINE Alu -178 134 23 1052 134 0 0 chr13 59678773 59678922 -60065976 + AluSg/x SINE Alu 149 297 -13 35129 81 18 11 chr13 59678930 59685019 -60059879 + L1PA6 LINE L1 11 6141 -13 1203 106 6 18 chr13 59685019 59685217 -60059681 - THE1C LTR MaLR -153 202 1 582 177 21 95 chr13 59685233 59685390 -60059508 + Charlie2a DNA MER1_type 1257 1391 -1471 2115 107 3 7 chr13 59685390 59685679 -60059219 - AluSg SINE Alu -22 288 1 582 177 21 95 chr13 59685679 59685764 -60059134 + Charlie2a DNA MER1_type 1391 1481 -1381 21 0 0 0 chr13 59685766 59685787 -60059111 + AT_rich Low_complexity Low_complexity 1 21 0 3256 217 93 33 chr13 59685788 59686623 -60058275 + L1MDa LINE L1 3 787 -5753 2849 19 0 0 chr13 59686623 59686940 -60057958 + AluYb8 SINE Alu 1 317 -1 3256 217 93 33 chr13 59686940 59687308 -60057590 + L1MDa LINE L1 787 1132 -5408 1812 134 99 41 chr13 59687308 59687652 -60057246 - THE1B LTR MaLR 0 364 1 3256 217 93 33 chr13 59687652 59688580 -60056318 + L1MDa LINE L1 1132 2519 -4021 564 175 233 123 chr13 59688593 59688885 -60056013 + L1MD2 LINE L1 6010 6333 -26 784 228 72 50 chr13 59688885 59689244 -60055654 + Charlie2a DNA MER1_type 1496 1862 -1000 546 263 77 4 chr13 59689232 59689479 -60055419 + Charlie2a DNA MER1_type 2532 2796 -66 * 2087 224 91 33 chr13 59690071 59690773 -60054125 - HsTC2a DNA MER2_type 0 744 2 1806 281 20 92 chr13 59691107 59692176 -60052722 + L1M2 LINE L1 1 992 -5857 1371 217 22 12 chr13 59692180 59692689 -60052209 + L1M2 LINE L1 2733 3249 -3599 227 289 0 0 chr13 59692691 59692743 -60052155 + FRAM/FAM SINE Alu 2 53 -113 1270 189 26 10 chr13 59692777 59693079 -60051819 + L1MA4A LINE L1 5816 6122 -181 2222 92 3 13 chr13 59693082 59693386 -60051512 + AluY SINE Alu 1 301 -10 273 29 0 0 chr13 59693386 59693420 -60051478 + (TA)n Simple_repeat Simple_repeat 2 35 0 488 147 35 35 chr13 59693420 59693536 -60051362 + L1MA4A LINE L1 6182 6297 -6 354 167 7 65 chr13 59693946 59694084 -60050814 + GA-rich Low_complexity Low_complexity 2 131 0 1953 185 0 5 chr13 59694136 59694503 -60050395 + L1PB4 LINE L1 5786 6150 -6 2289 100 0 3 chr13 59694677 59694976 -60049922 + AluSg SINE Alu 1 298 -12 1921 270 94 21 chr13 59695014 59696005 -60048893 - L1ME LINE L1 -4996 1074 12 473 255 176 25 chr13 59696040 59696244 -60048654 - MIR SINE MIR -12 250 16 322 298 105 41 chr13 59696391 59696562 -60048336 - MER5A DNA MER1_type -1 188 7 316 273 224 22 chr13 59696678 59696861 -60048037 - MIR SINE MIR -37 225 6 971 206 43 123 chr13 59698242 59698639 -60046259 - MLT1A1 LTR MaLR 0 365 1 1710 171 7 23 chr13 59699039 59699344 -60045554 - AluJb SINE Alu -12 300 1 31 26 0 0 chr13 59699582 59699620 -60045278 + AT_rich Low_complexity Low_complexity 1 38 0 486 350 31 27 chr13 59699701 59700287 -60044611 - L1MC4a LINE L1 -1902 5906 5319 267 353 9 0 chr13 59700542 59700658 -60044240 - L1ME LINE L1 -449 5672 5556 1844 137 51 46 chr13 59700689 59701062 -60043836 - THE1C LTR MaLR 0 375 1 977 195 16 0 chr13 59701548 59701733 -60043165 - MER5A DNA MER1_type 0 189 2 421 306 101 47 chr13 59701742 59702001 -60042897 - L3b LINE CR1 -144 1439 1158 2223 87 7 0 chr13 59702001 59702287 -60042611 - AluY SINE Alu -23 288 1 421 306 101 47 chr13 59702287 59702344 -60042554 - L3b LINE CR1 -425 1158 1106 234 296 0 0 chr13 59702630 59702684 -60042214 - L2 LINE L2 0 3272 3219 509 173 87 0 chr13 59703562 59703666 -60041232 + L1M2c LINE L1 534 646 -6143 278 307 48 29 chr13 59703813 59704129 -60040769 + L1M4 LINE L1 3716 4037 -2109 2358 134 26 29 chr13 59704129 59704547 -60040351 - MSTB LTR MaLR 0 426 10 9466 193 29 60 chr13 59704662 59706352 -60038546 + L1M2c LINE L1 6 1747 -5041 2110 139 10 0 chr13 59706352 59706654 -60038244 - AluSx SINE Alu -7 305 1 9466 193 29 60 chr13 59706654 59708754 -60036144 + L1M2c LINE L1 1747 3910 -2878 2214 117 0 7 chr13 59708754 59709061 -60035837 - AluSc SINE Alu -4 305 1 9466 193 29 60 chr13 59709061 59710603 -60034295 + L1M2c LINE L1 3910 5196 -1592 2372 93 3 0 chr13 59710603 59710904 -60033994 + AluSp SINE Alu 1 302 -11 9466 193 29 60 chr13 59710904 59710916 -60033982 + L1M2c LINE L1 5196 5207 -1581 517 72 0 0 chr13 59710916 59710985 -60033913 - THE1A LTR MaLR 0 355 287 290 79 0 0 chr13 59710980 59711018 -60033880 - THE1A LTR MaLR -317 38 1 * 22 35 0 0 chr13 59711722 59711751 -60033147 + AT_rich Low_complexity Low_complexity 1 29 0 235 361 131 0 chr13 59712382 59712512 -60032386 - L2 LINE L2 -5 3267 3121 1277 191 41 108 chr13 59712555 59712690 -60032208 - MER39 LTR ERV1 -20 666 524 1934 70 4 4 chr13 59712690 59712932 -60031966 + AluY SINE Alu 70 311 0 1277 191 41 108 chr13 59712932 59713329 -60031569 - MER39 LTR ERV1 -162 524 1 930 291 128 21 chr13 59713558 59714028 -60030870 + MLT1G1 LTR MaLR 76 595 0 360 232 65 72 chr13 59714489 59714627 -60030271 - L2 LINE L2 -2 3311 3175 354 308 45 32 chr13 59714979 59715135 -60029763 - L2 LINE L2 0 3313 3156 1736 223 138 5 chr13 59715142 59715569 -60029329 - MLT1D LTR MaLR 0 505 22 288 348 90 20 chr13 59715605 59715806 -60029092 - L2 LINE L2 -418 2896 2682 3377 288 120 26 chr13 59715806 59716646 -60028252 - L2 LINE L2 -1515 1799 1039 279 0 0 0 chr13 59716646 59716677 -60028221 + (CAAAC)n Simple_repeat Simple_repeat 2 32 0 3377 288 120 26 chr13 59716677 59717398 -60027500 - L2 LINE L2 -2275 1039 92 902 198 12 0 chr13 59717418 59717580 -60027318 - MER58B DNA MER1_type -10 331 168 286 289 70 40 chr13 59717812 59718013 -60026885 - L2 LINE L2 -857 2457 2251 308 330 9 9 chr13 59718680 59718789 -60026109 + MIR SINE MIR 33 141 -67 398 276 71 0 chr13 59720939 59721037 -60023861 - L2 LINE L2 0 3272 3168 692 300 113 61 chr13 59721328 59722207 -60022691 + L2 LINE L2 2378 3313 0 411 332 75 36 chr13 59722356 59722609 -60022289 - L2 LINE L2 -408 2906 2644 445 286 41 14 chr13 59722756 59722903 -60021995 + MIR SINE MIR 3 153 -109 2037 195 50 44 chr13 59725081 59725583 -60019315 + MLT1D LTR MaLR 1 505 0 433 239 26 8 chr13 59726303 59726420 -60018478 - MIR SINE MIR -50 212 94 230 248 51 103 chr13 59727264 59727381 -60017517 - MIR SINE MIR -145 117 7 2346 106 0 0 chr13 59727648 59727950 -60016948 + AluSx SINE Alu 1 302 -10 2377 131 84 30 chr13 59728090 59728495 -60016403 + MSTA LTR MaLR 2 428 0 551 255 34 20 chr13 59728741 59728890 -60016008 - MLT1D LTR MaLR -354 151 1 384 373 22 13 chr13 59728894 59729119 -60015779 - L3 LINE CR1 -81 1496 1270 369 311 119 56 chr13 59729444 59730041 -60014857 + L2 LINE L2 2651 3310 -3 1043 249 47 0 chr13 59730247 59730460 -60014438 - MER58A DNA MER1_type 0 224 2 2268 144 29 27 chr13 59730629 59731003 -60013895 - THE1C LTR MaLR 0 375 1 389 352 65 0 chr13 59732940 59733139 -60011759 + LTR33 LTR ERVL 3 214 -307 433 216 196 14 chr13 59733203 59733351 -60011547 + LTR33 LTR ERVL 329 503 -18 480 295 41 97 chr13 59733468 59733568 -60011330 + L1M4 LINE L1 4624 4728 -1418 1464 201 3 41 chr13 59733568 59733886 -60011012 - AluJo SINE Alu -6 306 1 480 295 41 97 chr13 59733886 59733997 -60010901 + L1M4 LINE L1 4728 4844 -1302 2952 79 3 0 chr13 59733997 59734351 -60010547 + THE1A LTR MaLR 1 355 0 12008 101 16 1 chr13 59734351 59735907 -60008991 + THE1A-int LTR MaLR 1 1580 0 2711 88 35 0 chr13 59735907 59736250 -60008648 + THE1A LTR MaLR 1 355 0 480 295 41 97 chr13 59736250 59736520 -60008378 + L1M4 LINE L1 4841 5081 -1065 295 250 115 45 chr13 59736646 59736802 -60008096 + L1MEd LINE L1 4 170 -5949 1364 276 91 56 chr13 59737100 59737580 -60007318 + L1MEd LINE L1 572 1008 -5123 1992 157 0 0 chr13 59737580 59737873 -60007025 - AluSx SINE Alu -19 293 1 1364 276 91 56 chr13 59737873 59738379 -60006519 + L1MEd LINE L1 1008 1495 -4636 186 254 0 0 chr13 59738705 59738772 -60006126 + (TA)n Simple_repeat Simple_repeat 1 67 0 226 184 53 66 chr13 59739232 59739308 -60005590 + L1ME4a LINE L1 5989 6063 -58 689 261 107 18 chr13 59739732 59740058 -60004840 + MLT1J1 LTR MaLR 1 355 -91 1616 99 37 0 chr13 59740609 59740851 -60004047 + Tigger7 DNA MER2_type 2329 2579 -8 393 354 86 41 chr13 59743280 59743594 -60001304 + L2 LINE L2 2857 3184 -88 1450 116 18 109 chr13 59743594 59743816 -60001082 + Tigger2a DNA MER2_type 2 194 -2514 2309 109 0 0 chr13 59743816 59744127 -60000771 - AluY SINE Alu 0 311 1 1450 116 18 109 chr13 59744127 59744189 -60000709 + Tigger2a DNA MER2_type 194 260 -174 682 157 20 0 chr13 59744190 59744292 -60000606 + AluSq SINE Alu 2 105 -208 22 56 0 0 chr13 59744896 59744932 -59999966 + AT_rich Low_complexity Low_complexity 1 36 0 1540 123 0 0 chr13 59744951 59745155 -59999743 + AluSq SINE Alu 98 301 -12 1193 169 5 0 chr13 59745155 59745339 -59999559 + Tigger2a DNA MER2_type 250 434 0 216 0 0 0 chr13 59745576 59745600 -59999298 + (T)n Simple_repeat Simple_repeat 1 24 0 577 318 45 18 chr13 59746878 59747098 -59997800 + MIR SINE MIR 19 244 -18 191 248 181 57 chr13 59747605 59747710 -59997188 + MIR3 SINE MIR 91 208 0 288 368 119 0 chr13 59747714 59747907 -59996991 - L3 LINE CR1 -148 1429 1214 1907 142 130 6 chr13 59752225 59752549 -59992349 - THE1B LTR MaLR 0 364 1 279 0 0 0 chr13 59752592 59752623 -59992275 + (CA)n Simple_repeat Simple_repeat 1 31 0 2246 200 49 12 chr13 59752625 59753102 -59991796 - MLT2B1 LTR ERVL -20 534 4 2216 68 53 0 chr13 59753103 59753384 -59991514 + AluY SINE Alu 2 297 -14 1051 304 53 11 chr13 59755997 59756356 -59988542 + L2 LINE L2 2940 3313 0 236 135 0 39 chr13 59756557 59756609 -59988289 + (CATA)n Simple_repeat Simple_repeat 2 51 0 409 261 43 17 chr13 59757465 59757580 -59987318 + L2 LINE L2 3196 3313 0 257 230 14 0 chr13 59757740 59757814 -59987084 + (CATA)n Simple_repeat Simple_repeat 3 77 0 1667 261 90 58 chr13 59758185 59758916 -59985982 + L2 LINE L2 1205 1959 -1355 2439 50 7 7 chr13 59759512 59759812 -59985086 - AluY SINE Alu -11 300 1 439 183 0 0 chr13 59759850 59759921 -59984977 - AluJ/FLAM SINE Alu -238 74 4 209 302 45 28 chr13 59762154 59762333 -59982565 + L2 LINE L2 1789 1970 -1344 229 312 58 51 chr13 59762357 59762495 -59982403 + MER77 LTR ERV1 64 202 -403 * 1000 273 77 75 chr13 59762465 59763077 -59981821 + MER21B LTR ERV1 100 712 -151 264 238 0 32 chr13 59763166 59763229 -59981669 - MIR SINE MIR -50 212 152 336 282 71 65 chr13 59763939 59763989 -59980909 - MIR SINE MIR -11 251 203 1548 209 0 19 chr13 59763989 59764296 -59980602 - AluJo SINE Alu -11 301 1 336 282 71 65 chr13 59764296 59764307 -59980591 - MIR SINE MIR -59 203 194 2212 46 0 8 chr13 59764307 59764569 -59980329 - AluY SINE Alu -8 303 44 336 282 71 65 chr13 59764569 59764676 -59980222 - MIR SINE MIR -68 194 81 1056 305 41 23 chr13 59765051 59765441 -59979457 - L3 LINE CR1 -1 1576 1180 483 263 34 8 chr13 59765964 59766082 -59978816 + L2 LINE L2 3192 3312 -1 1284 163 49 52 chr13 59766261 59766586 -59978312 - MER33 DNA MER1_type 0 324 1 25 31 0 0 chr13 59769671 59769703 -59975195 + AT_rich Low_complexity Low_complexity 1 32 0 1795 153 0 38 chr13 59770116 59770430 -59974468 + AluJb SINE Alu 2 303 -9 353 318 121 9 chr13 59770580 59770803 -59974095 - MIR SINE MIR 0 262 15 941 146 7 0 chr13 59771273 59771417 -59973481 - FRAM SINE Alu -32 144 1 340 252 140 0 chr13 59771985 59772092 -59972806 - L2 LINE L2 0 3313 3192 288 333 71 7 chr13 59774432 59774573 -59970325 - MIR SINE MIR -92 170 21 209 250 21 0 chr13 59777408 59777456 -59967442 - L2 LINE L2 -10 3303 3255 210 71 0 0 chr13 59778722 59778750 -59966148 + (TG)n Simple_repeat Simple_repeat 2 29 0 222 257 0 119 chr13 59778892 59778993 -59965905 - MIR3 SINE MIR -31 177 89 184 310 141 0 chr13 59779248 59779319 -59965579 - MIR SINE MIR -71 137 57 520 308 66 91 chr13 59779684 59780093 -59964805 - L2 LINE L2 0 3272 2874 240 35 0 0 chr13 59781066 59781095 -59963803 + (T)n Simple_repeat Simple_repeat 1 29 0 224 300 29 0 chr13 59781511 59781581 -59963317 - MIR SINE MIR -64 144 73 476 285 119 48 chr13 59781833 59782294 -59962604 - L2 LINE L2 -103 3210 2711 2630 42 0 3 chr13 59786108 59786420 -59958478 + AluY SINE Alu 1 311 0 1104 250 205 19 chr13 59787919 59788438 -59956460 - L2 LINE L2 -2 3311 2708 407 245 9 19 chr13 59789620 59789726 -59955172 + MLT1J2 LTR MaLR 344 448 -2 321 237 26 103 chr13 59790360 59790516 -59954382 + L2 LINE L2 3169 3312 -1 326 329 194 17 chr13 59791683 59791920 -59952978 + L2 LINE L2 2805 3083 -230 189 0 0 0 chr13 59791972 59791993 -59952905 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1176 145 61 0 chr13 59792048 59792276 -59952622 + MER33 DNA MER1_type 1 242 -82 312 305 47 25 chr13 59792321 59792760 -59952138 - L1M4b LINE L1 -5002 1945 1346 430 189 28 63 chr13 59793416 59793459 -59951439 + L2 LINE L2 3114 3157 -156 1829 170 58 6 chr13 59793459 59793789 -59951109 + MER7A DNA MER2_type 1 345 -1 430 189 28 63 chr13 59793789 59793888 -59951010 + L2 LINE L2 3157 3251 -62 812 241 109 42 chr13 59794229 59794540 -59950358 - MARNA DNA Mariner -88 498 167 1839 167 42 3 chr13 59794917 59795247 -59949651 + MER2 DNA MER2_type 2 344 0 1053 241 34 40 chr13 59796643 59796996 -59947902 + L2 LINE L2 1417 1767 -1547 1182 165 62 50 chr13 59796996 59797238 -59947660 - AluJo SINE Alu -14 298 54 1504 268 77 12 chr13 59797239 59797720 -59947178 + L2 LINE L2 1759 2270 -1044 31 0 0 0 chr13 59797755 59797786 -59947112 + AT_rich Low_complexity Low_complexity 1 31 0 7796 19 0 0 chr13 59798206 59799189 -59945709 + L1PA3 LINE L1 5172 6154 -1 330 268 177 24 chr13 59799523 59799687 -59945211 + MIR SINE MIR 74 262 0 278 233 12 0 chr13 59800410 59800496 -59944402 + (CCA)n Simple_repeat Simple_repeat 2 88 0 475 283 82 38 chr13 59800537 59800721 -59944177 - MIR SINE MIR -48 214 23 198 348 14 0 chr13 59800717 59800786 -59944112 + L2 LINE L2 3244 3313 0 * 365 320 16 0 chr13 59801377 59801505 -59943393 + L2 LINE L2 2554 2683 -631 2151 136 12 18 chr13 59801755 59802086 -59942812 - MER1B DNA MER1_type -10 329 1 184 232 143 0 chr13 59802097 59802153 -59942745 + L2 LINE L2 3250 3313 0 526 212 119 8 chr13 59802173 59802291 -59942607 - FLAM_A SINE Alu -2 131 1 308 260 133 77 chr13 59802621 59802802 -59942096 + MLT1L LTR MaLR 200 390 -225 1300 206 3 50 chr13 59802881 59803014 -59941884 + AluJo SINE Alu 13 128 -184 2817 7 0 0 chr13 59803014 59803321 -59941577 + AluYa5 SINE Alu 1 307 -4 1300 206 3 50 chr13 59803321 59803469 -59941429 + AluJo SINE Alu 128 281 -31 228 226 57 0 chr13 59804195 59804248 -59940650 + L2 LINE L2 3254 3309 -4 338 399 19 0 chr13 59804414 59804572 -59940326 - L3 LINE CR1 -74 1503 1343 261 271 158 30 chr13 59804675 59804808 -59940090 + MIR SINE MIR 83 232 -30 2316 72 0 3 chr13 59805118 59805410 -59939488 - AluY SINE Alu -20 291 1 455 281 51 22 chr13 59805488 59805666 -59939232 - MIR SINE MIR -27 235 53 212 57 0 29 chr13 59806737 59806758 -59938140 + (CAAAC)n Simple_repeat Simple_repeat 1 54 0 212 57 0 29 chr13 59806758 59806793 -59938105 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 284 308 20 77 chr13 59806937 59807132 -59937766 - MIR SINE MIR -3 259 76 189 0 0 0 chr13 59808028 59808049 -59936849 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 379 316 106 55 chr13 59808640 59808896 -59936002 + MLT1J LTR MaLR 235 503 -8 802 144 352 37 chr13 59808956 59809241 -59935657 - Tigger3(Golem) DNA MER2_type -23 3006 2 34 89 0 0 chr13 59809329 59809419 -59935479 + AT_rich Low_complexity Low_complexity 1 90 0 201 431 65 0 chr13 59809446 59809569 -59935329 + L2 LINE L2 3141 3271 -1 246 62 0 0 chr13 59812395 59812427 -59932471 + (TG)n Simple_repeat Simple_repeat 1 32 0 2272 96 0 13 chr13 59812545 59812848 -59932050 - AluSg SINE Alu -11 299 1 195 42 0 0 chr13 59812895 59812919 -59931979 + (A)n Simple_repeat Simple_repeat 1 24 0 618 184 41 77 chr13 59813013 59813209 -59931689 + MER53 DNA DNA 1 189 0 21 36 0 0 chr13 59814899 59814927 -59929971 + AT_rich Low_complexity Low_complexity 1 28 0 685 238 31 54 chr13 59816401 59816624 -59928274 + MIR SINE MIR 45 262 0 787 202 113 101 chr13 59818401 59818737 -59926161 + L1MD2 LINE L1 5981 6320 -39 827 142 0 0 chr13 59818744 59818871 -59926027 - AluJb SINE Alu -5 307 181 577 294 42 60 chr13 59819570 59819835 -59925063 + MIR SINE MIR 3 262 0 1596 173 7 34 chr13 59821390 59821685 -59923213 - AluJo SINE Alu -19 293 7 494 202 55 93 chr13 59821835 59822018 -59922880 - MER112 DNA MER1_type -83 177 2 22 35 0 0 chr13 59823723 59823752 -59921146 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 59824355 59824376 -59920522 + AT_rich Low_complexity Low_complexity 1 21 0 5109 103 9 3 chr13 59824719 59825457 -59919441 - L1PA12 LINE L1 0 6168 5426 293 133 0 0 chr13 59825460 59825505 -59919393 - L1PA12 LINE L1 -775 5386 5342 * 4139 156 27 4 chr13 59825503 59826284 -59918614 + L1PA12 LINE L1 4544 5342 -804 216 363 50 0 chr13 59826326 59826406 -59918492 - L2 LINE L2 -2 3311 3228 280 229 206 53 chr13 59826555 59826725 -59918173 + MIR SINE MIR 48 243 -19 2042 128 3 3 chr13 59826821 59827125 -59917773 + AluSx SINE Alu 1 304 -8 224 300 29 0 chr13 59828738 59828808 -59916090 + MIR SINE MIR 73 144 -64 225 0 0 0 chr13 59829224 59829249 -59915649 + (A)n Simple_repeat Simple_repeat 1 25 0 850 212 67 40 chr13 59829804 59830118 -59914780 + MSTD LTR MaLR 45 396 0 192 200 0 0 chr13 59830223 59830268 -59914630 + (TA)n Simple_repeat Simple_repeat 2 46 0 231 226 71 0 chr13 59830271 59830355 -59914543 + L1MC4 LINE L1 6614 6703 -1339 353 252 84 98 chr13 59830385 59830421 -59914477 - HAL1 LINE L1 -1479 1028 993 1678 185 3 24 chr13 59830421 59830719 -59914179 + AluJo SINE Alu 1 292 -20 353 252 84 98 chr13 59830719 59830896 -59914002 - HAL1 LINE L1 -1514 993 818 304 231 0 0 chr13 59831293 59831345 -59913553 + MIR SINE MIR 2 53 -209 2140 188 24 15 chr13 59831488 59831951 -59912947 + MLT1C LTR MaLR 1 467 0 376 330 101 38 chr13 59832394 59832603 -59912295 - MIR SINE MIR -13 249 28 225 94 0 0 chr13 59833816 59833848 -59911050 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 678 163 0 0 chr13 59835663 59835804 -59909094 + GA-rich Low_complexity Low_complexity 2 142 0 422 229 139 63 chr13 59836304 59836527 -59908371 + L1ME LINE L1 5381 5620 -501 2730 33 0 0 chr13 59836627 59836934 -59907964 - AluY SINE Alu -4 307 1 636 259 106 24 chr13 59837174 59837872 -59907026 + L1MD2 LINE L1 5309 6165 -5 1719 169 3 44 chr13 59838003 59838323 -59906575 - AluJo SINE Alu -3 309 3 1878 80 0 16 chr13 59838933 59839217 -59905681 + AluSg SINE Alu 37 316 0 571 273 102 62 chr13 59841158 59841286 -59903612 - MLT1F LTR MaLR -252 290 169 2367 68 10 13 chr13 59841286 59841593 -59903305 - AluSc SINE Alu -3 306 1 571 273 102 62 chr13 59841593 59841739 -59903159 - MLT1F LTR MaLR -373 169 5 401 290 145 24 chr13 59842038 59842245 -59902653 - MIR SINE MIR -26 236 5 295 202 262 0 chr13 59842451 59842535 -59902363 - MER2 DNA MER2_type -172 173 68 395 316 156 28 chr13 59842735 59842953 -59901945 + MIR SINE MIR 8 253 -9 1279 158 194 0 chr13 59843973 59844226 -59900672 + AluJb SINE Alu 1 302 0 971 201 64 17 chr13 59844323 59844408 -59900490 - MER39 LTR ERV1 -12 695 615 2378 119 23 0 chr13 59844408 59844762 -59900136 - THE1B LTR MaLR 0 364 3 971 201 64 17 chr13 59844762 59844989 -59899909 - MER39 LTR ERV1 -92 615 331 598 178 0 46 chr13 59845058 59845232 -59899666 + GA-rich Low_complexity Low_complexity 2 167 0 222 353 19 66 chr13 59845645 59845903 -59898995 - L2 LINE L2 -601 2713 2468 354 211 63 11 chr13 59846560 59846655 -59898243 + L1ME3A LINE L1 6062 6161 -9 307 330 75 0 chr13 59846818 59846924 -59897974 - L2 LINE L2 -8 3264 3151 1455 63 117 5 chr13 59846927 59847133 -59897765 - MER30 DNA MER1_type 0 230 2 22 0 0 0 chr13 59848641 59848663 -59896235 + AT_rich Low_complexity Low_complexity 1 22 0 1876 151 7 10 chr13 59848717 59849021 -59895877 - AluSx SINE Alu -8 304 2 270 281 73 61 chr13 59849146 59849310 -59895588 + MER5B DNA MER1_type 13 178 0 2137 129 13 0 chr13 59851430 59851733 -59893165 + AluSx SINE Alu 1 307 -5 2564 60 0 0 chr13 59851737 59852039 -59892859 + AluY SINE Alu 1 302 -9 21 36 0 0 chr13 59852177 59852205 -59892693 + AT_rich Low_complexity Low_complexity 1 28 0 453 275 183 2 chr13 59854654 59854834 -59890064 - MIR SINE MIR -51 211 1 1964 153 3 3 chr13 59854866 59855166 -59889732 - AluJb SINE Alu -12 300 1 21 71 0 0 chr13 59855263 59855305 -59889593 + AT_rich Low_complexity Low_complexity 1 42 0 453 288 33 14 chr13 59856725 59856908 -59887990 + MIR SINE MIR 13 262 0 255 258 15 15 chr13 59857003 59857069 -59887829 + MIR SINE MIR 26 91 -171 596 230 45 22 chr13 59857303 59857481 -59887417 - MIR SINE MIR -13 249 68 23 0 0 0 chr13 59857808 59857831 -59887067 + AT_rich Low_complexity Low_complexity 1 23 0 355 349 48 21 chr13 59857850 59858039 -59886859 + L3 LINE CR1 664 857 -720 582 256 52 52 chr13 59858147 59858319 -59886579 + MER5B DNA MER1_type 1 172 -6 812 179 95 0 chr13 59858523 59858691 -5988